Query 014886
Match_columns 416
No_of_seqs 202 out of 1814
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02534 mucon_cyclo muconate 100.0 9.5E-72 2.1E-76 559.3 41.4 358 48-413 1-367 (368)
2 cd03318 MLE Muconate Lactonizi 100.0 4.4E-71 9.5E-76 554.1 41.1 356 47-410 1-365 (365)
3 cd03321 mandelate_racemase Man 100.0 1.2E-68 2.6E-73 534.2 38.0 348 46-412 1-355 (355)
4 cd03317 NAAAR N-acylamino acid 100.0 3.6E-68 7.9E-73 531.1 41.5 347 51-410 1-354 (354)
5 cd03323 D-glucarate_dehydratas 100.0 8.7E-68 1.9E-72 533.3 39.4 350 47-413 1-390 (395)
6 cd03328 MR_like_3 Mandelate ra 100.0 5.2E-68 1.1E-72 528.4 36.9 339 47-405 1-351 (352)
7 PRK15072 bifunctional D-altron 100.0 1E-66 2.2E-71 527.9 39.8 343 46-413 1-386 (404)
8 cd03329 MR_like_4 Mandelate ra 100.0 2.6E-66 5.5E-71 519.8 39.4 345 47-411 1-368 (368)
9 PRK14017 galactonate dehydrata 100.0 3.8E-66 8.2E-71 520.8 38.2 340 46-413 1-362 (382)
10 cd03326 MR_like_1 Mandelate ra 100.0 2.2E-65 4.8E-70 513.5 40.5 344 51-413 3-384 (385)
11 cd03316 MR_like Mandelate race 100.0 9E-65 2E-69 507.3 38.0 340 47-402 1-357 (357)
12 cd03322 rpsA The starvation se 100.0 9.2E-65 2E-69 507.0 37.8 335 47-413 1-343 (361)
13 cd03325 D-galactonate_dehydrat 100.0 3.3E-64 7.2E-69 501.5 36.6 330 47-404 1-352 (352)
14 cd03327 MR_like_2 Mandelate ra 100.0 1.8E-63 3.9E-68 494.2 36.3 319 47-404 1-341 (341)
15 COG4948 L-alanine-DL-glutamate 100.0 2.4E-63 5.1E-68 499.3 37.0 355 46-415 1-370 (372)
16 cd03324 rTSbeta_L-fuconate_deh 100.0 3.4E-63 7.5E-68 501.4 37.4 342 46-404 1-415 (415)
17 TIGR03247 glucar-dehydr glucar 100.0 1.1E-62 2.3E-67 500.4 39.7 349 47-412 5-406 (441)
18 TIGR01928 menC_lowGC/arch o-su 100.0 1.4E-60 3E-65 470.2 36.9 317 54-383 1-322 (324)
19 PRK15440 L-rhamnonate dehydrat 100.0 2.1E-60 4.6E-65 478.0 37.0 315 72-412 54-391 (394)
20 PRK15129 L-Ala-D/L-Glu epimera 100.0 2.6E-59 5.6E-64 460.6 39.7 317 50-393 3-321 (321)
21 cd03319 L-Ala-DL-Glu_epimerase 100.0 7.3E-59 1.6E-63 457.1 40.1 311 50-372 1-313 (316)
22 cd03315 MLE_like Muconate lact 100.0 1.9E-56 4.2E-61 429.4 34.0 257 51-364 1-259 (265)
23 TIGR01927 menC_gamma/gm+ o-suc 100.0 1.3E-53 2.8E-58 417.1 31.1 289 54-374 1-295 (307)
24 cd03320 OSBS o-Succinylbenzoat 100.0 6.7E-54 1.5E-58 411.2 27.3 250 52-364 2-255 (263)
25 PRK05105 O-succinylbenzoate sy 100.0 6.3E-52 1.4E-56 407.8 32.6 296 49-380 2-302 (322)
26 PRK02714 O-succinylbenzoate sy 100.0 7.6E-52 1.6E-56 407.1 31.9 283 50-363 4-292 (320)
27 TIGR01502 B_methylAsp_ase meth 100.0 1.1E-50 2.4E-55 406.2 35.1 286 73-363 48-376 (408)
28 cd03314 MAL Methylaspartate am 100.0 4.3E-51 9.2E-56 405.1 31.7 287 75-364 13-341 (369)
29 PLN02980 2-oxoglutarate decarb 100.0 3.6E-50 7.9E-55 463.5 35.8 312 38-363 923-1267(1655)
30 cd00308 enolase_like Enolase-s 100.0 3.8E-50 8.2E-55 377.8 25.9 225 51-368 1-228 (229)
31 PRK02901 O-succinylbenzoate sy 100.0 4.6E-44 9.9E-49 350.9 31.7 287 52-415 13-306 (327)
32 PRK00077 eno enolase; Provisio 100.0 1.9E-39 4.1E-44 329.6 32.7 300 46-363 2-384 (425)
33 cd03313 enolase Enolase: Enola 100.0 2.6E-38 5.7E-43 319.6 29.1 283 74-362 13-383 (408)
34 TIGR01060 eno phosphopyruvate 100.0 1.4E-37 3E-42 315.9 31.7 285 74-364 15-386 (425)
35 PLN00191 enolase 100.0 2.6E-31 5.7E-36 269.7 32.9 299 46-364 26-417 (457)
36 PTZ00081 enolase; Provisional 100.0 6.2E-29 1.3E-33 251.6 32.7 297 45-363 1-402 (439)
37 COG1441 MenC O-succinylbenzoat 99.9 3.2E-26 6.9E-31 205.4 17.5 274 50-361 3-282 (321)
38 PF02746 MR_MLE_N: Mandelate r 99.9 5.7E-23 1.2E-27 173.1 15.8 115 49-170 2-117 (117)
39 PF13378 MR_MLE_C: Enolase C-t 99.9 3E-22 6.5E-27 167.0 9.2 106 292-402 1-111 (111)
40 COG0148 Eno Enolase [Carbohydr 99.7 1.2E-14 2.7E-19 141.0 30.3 296 47-363 3-381 (423)
41 PRK08350 hypothetical protein; 99.7 1.9E-15 4E-20 145.5 23.5 281 47-363 3-307 (341)
42 PF01188 MR_MLE: Mandelate rac 99.7 2.5E-16 5.5E-21 119.1 8.6 66 219-292 1-67 (67)
43 PTZ00378 hypothetical protein; 99.6 8.2E-13 1.8E-17 133.9 25.9 295 44-362 47-450 (518)
44 COG3799 Mal Methylaspartate am 99.4 9.5E-12 2.1E-16 116.1 17.3 287 74-362 50-376 (410)
45 PF07476 MAAL_C: Methylasparta 99.3 4.9E-11 1.1E-15 107.8 14.1 162 200-363 33-217 (248)
46 KOG2670 Enolase [Carbohydrate 99.3 1.4E-09 3E-14 103.1 22.5 279 75-361 18-390 (433)
47 cd02932 OYE_YqiM_FMN Old yello 99.1 2E-09 4.4E-14 107.0 14.6 121 189-315 155-319 (336)
48 cd02801 DUS_like_FMN Dihydrour 99.1 7.3E-09 1.6E-13 97.3 16.7 142 167-315 46-212 (231)
49 PF00113 Enolase_C: Enolase, C 98.8 3E-08 6.4E-13 95.9 12.2 166 183-363 75-254 (295)
50 cd04733 OYE_like_2_FMN Old yel 98.8 1.1E-07 2.4E-12 94.6 15.7 121 189-315 150-321 (338)
51 cd02803 OYE_like_FMN_family Ol 98.7 3.8E-07 8.3E-12 90.3 14.7 120 190-315 143-310 (327)
52 cd02930 DCR_FMN 2,4-dienoyl-Co 98.6 6.4E-07 1.4E-11 89.7 14.2 122 190-315 139-305 (353)
53 PF03952 Enolase_N: Enolase, N 98.2 6.8E-05 1.5E-09 64.1 14.0 111 47-169 1-132 (132)
54 PRK10550 tRNA-dihydrouridine s 97.5 0.0053 1.2E-07 60.4 17.1 139 176-318 63-226 (312)
55 PRK10415 tRNA-dihydrouridine s 97.2 0.012 2.7E-07 58.1 15.8 137 177-320 66-228 (321)
56 PF05034 MAAL_N: Methylasparta 97.2 0.0044 9.5E-08 53.6 10.1 96 74-169 50-153 (159)
57 COG0042 tRNA-dihydrouridine sy 97.1 0.018 3.9E-07 57.0 15.4 138 177-321 68-233 (323)
58 cd02810 DHOD_DHPD_FMN Dihydroo 96.9 0.018 4E-07 55.8 13.7 132 176-315 99-271 (289)
59 cd04734 OYE_like_3_FMN Old yel 96.8 0.043 9.3E-07 54.8 15.6 120 190-315 143-314 (343)
60 TIGR00736 nifR3_rel_arch TIM-b 96.8 0.068 1.5E-06 50.2 15.8 131 177-315 69-219 (231)
61 cd02931 ER_like_FMN Enoate red 96.8 0.04 8.8E-07 55.8 15.3 123 191-315 153-334 (382)
62 PRK11815 tRNA-dihydrouridine s 96.8 0.1 2.2E-06 51.9 17.8 142 167-316 56-233 (333)
63 PF01207 Dus: Dihydrouridine s 96.8 0.018 4E-07 56.6 12.2 142 168-316 46-213 (309)
64 TIGR00737 nifR3_yhdG putative 96.7 0.071 1.5E-06 52.6 16.3 134 175-315 62-221 (319)
65 PRK07259 dihydroorotate dehydr 96.7 0.069 1.5E-06 52.2 15.9 132 176-317 92-264 (301)
66 cd04747 OYE_like_5_FMN Old yel 96.6 0.064 1.4E-06 53.9 15.0 120 190-315 146-327 (361)
67 TIGR00742 yjbN tRNA dihydrouri 96.5 0.16 3.5E-06 50.2 16.7 142 168-317 47-224 (318)
68 cd02911 arch_FMN Archeal FMN-b 96.4 0.21 4.6E-06 47.1 16.2 131 177-318 74-222 (233)
69 cd04740 DHOD_1B_like Dihydroor 96.3 0.19 4.1E-06 49.0 16.0 132 177-318 91-262 (296)
70 PRK13523 NADPH dehydrogenase N 96.1 0.11 2.5E-06 51.7 13.6 119 191-315 145-304 (337)
71 PRK08255 salicylyl-CoA 5-hydro 96.0 0.15 3.2E-06 56.5 15.2 123 190-315 553-716 (765)
72 COG1902 NemA NADH:flavin oxido 96.0 0.21 4.6E-06 50.2 14.7 126 190-315 151-317 (363)
73 PRK10605 N-ethylmaleimide redu 95.9 0.29 6.2E-06 49.3 15.5 123 190-315 161-320 (362)
74 TIGR01037 pyrD_sub1_fam dihydr 95.8 0.27 5.9E-06 48.0 14.5 152 177-338 92-290 (300)
75 cd04735 OYE_like_4_FMN Old yel 95.5 0.26 5.6E-06 49.4 13.1 119 190-313 146-310 (353)
76 cd00377 ICL_PEPM Members of th 95.2 0.41 8.8E-06 45.4 12.8 105 181-292 77-202 (243)
77 cd02929 TMADH_HD_FMN Trimethyl 95.1 0.71 1.5E-05 46.6 15.1 121 190-315 152-318 (370)
78 cd02933 OYE_like_FMN Old yello 95.1 0.82 1.8E-05 45.6 15.2 119 190-315 154-313 (338)
79 TIGR00735 hisF imidazoleglycer 95.0 0.58 1.3E-05 44.6 13.3 153 176-339 75-253 (254)
80 TIGR01182 eda Entner-Doudoroff 93.8 0.77 1.7E-05 42.3 10.8 97 241-350 18-115 (204)
81 COG0821 gcpE 1-hydroxy-2-methy 93.7 0.64 1.4E-05 45.5 10.4 97 241-345 34-132 (361)
82 PRK07114 keto-hydroxyglutarate 93.0 1.7 3.6E-05 40.7 11.7 100 241-350 25-126 (222)
83 PRK00366 ispG 4-hydroxy-3-meth 92.9 1.4 3E-05 43.7 11.5 110 227-344 23-138 (360)
84 PRK06015 keto-hydroxyglutarate 92.8 1.6 3.5E-05 40.1 11.3 98 241-351 14-112 (201)
85 COG0800 Eda 2-keto-3-deoxy-6-p 92.7 1.5 3.2E-05 40.4 10.7 96 241-349 23-119 (211)
86 PF00724 Oxidored_FMN: NADH:fl 92.6 0.69 1.5E-05 46.1 9.4 126 190-315 151-320 (341)
87 TIGR00612 ispG_gcpE 1-hydroxy- 92.3 1.3 2.8E-05 43.5 10.3 96 241-344 32-129 (346)
88 PRK05096 guanosine 5'-monophos 91.9 13 0.00028 36.9 16.7 129 185-345 79-222 (346)
89 PRK05458 guanosine 5'-monophos 91.7 7.6 0.00016 38.5 15.2 117 188-316 96-230 (326)
90 cd02940 DHPD_FMN Dihydropyrimi 91.5 7.9 0.00017 37.8 15.2 132 177-318 101-283 (299)
91 TIGR01304 IMP_DH_rel_2 IMP deh 91.5 8.7 0.00019 38.7 15.6 132 212-357 117-276 (369)
92 COG0106 HisA Phosphoribosylfor 91.4 5.3 0.00011 37.6 13.0 131 192-329 88-238 (241)
93 cd04738 DHOD_2_like Dihydrooro 91.4 4.1 9E-05 40.3 13.2 121 187-315 147-308 (327)
94 PRK05718 keto-hydroxyglutarate 91.2 2.2 4.8E-05 39.6 10.4 97 239-348 23-120 (212)
95 cd07943 DRE_TIM_HOA 4-hydroxy- 91.1 3.7 8E-05 39.2 12.2 100 238-343 17-132 (263)
96 PRK02083 imidazole glycerol ph 90.9 5.1 0.00011 38.0 13.0 153 176-339 75-251 (253)
97 cd00945 Aldolase_Class_I Class 90.9 11 0.00024 33.5 16.5 130 176-309 49-195 (201)
98 PLN02617 imidazole glycerol ph 90.9 4.8 0.0001 42.7 13.7 159 176-339 315-536 (538)
99 PRK06552 keto-hydroxyglutarate 90.8 4 8.6E-05 37.9 11.6 95 241-349 23-122 (213)
100 PRK13585 1-(5-phosphoribosyl)- 90.8 5.3 0.00012 37.4 12.8 122 183-315 84-221 (241)
101 PRK11320 prpB 2-methylisocitra 90.7 6.8 0.00015 38.2 13.6 102 183-291 88-207 (292)
102 PRK08649 inosine 5-monophospha 90.7 7 0.00015 39.4 14.1 82 270-357 175-277 (368)
103 TIGR02317 prpB methylisocitrat 90.6 6.4 0.00014 38.2 13.3 102 182-290 82-201 (285)
104 PRK09140 2-dehydro-3-deoxy-6-p 90.3 15 0.00032 33.9 16.8 141 182-344 16-159 (206)
105 KOG2335 tRNA-dihydrouridine sy 90.2 12 0.00026 37.3 14.7 152 177-337 75-268 (358)
106 KOG2550 IMP dehydrogenase/GMP 90.1 2.6 5.7E-05 42.4 10.2 101 213-345 249-363 (503)
107 PRK06552 keto-hydroxyglutarate 90.0 16 0.00035 33.9 16.2 143 182-345 19-164 (213)
108 PRK06015 keto-hydroxyglutarate 89.3 17 0.00038 33.4 15.7 143 182-345 10-153 (201)
109 PF01081 Aldolase: KDPG and KH 89.1 2.7 5.7E-05 38.6 8.9 99 240-351 17-116 (196)
110 PRK00748 1-(5-phosphoribosyl)- 89.0 8.9 0.00019 35.6 12.7 127 178-315 77-219 (233)
111 cd04741 DHOD_1A_like Dihydroor 89.0 24 0.00051 34.4 16.4 140 176-319 92-275 (294)
112 cd07944 DRE_TIM_HOA_like 4-hyd 88.8 7.9 0.00017 37.2 12.4 105 237-344 14-130 (266)
113 cd04739 DHOD_like Dihydroorota 88.8 17 0.00037 36.0 15.1 158 176-338 100-294 (325)
114 TIGR03217 4OH_2_O_val_ald 4-hy 88.7 7.6 0.00017 38.6 12.5 101 238-343 19-134 (333)
115 cd04732 HisA HisA. Phosphorib 88.6 6.8 0.00015 36.4 11.7 124 180-315 78-218 (234)
116 TIGR01182 eda Entner-Doudoroff 88.5 20 0.00044 33.0 15.7 142 182-345 14-157 (204)
117 PRK07565 dihydroorotate dehydr 88.4 20 0.00044 35.5 15.5 135 176-317 102-269 (334)
118 PRK01130 N-acetylmannosamine-6 88.4 17 0.00038 33.5 14.1 109 192-315 79-201 (221)
119 PRK01033 imidazole glycerol ph 88.1 8.9 0.00019 36.6 12.2 113 194-314 89-224 (258)
120 TIGR02319 CPEP_Pphonmut carbox 88.1 13 0.00027 36.4 13.3 100 183-289 87-204 (294)
121 PRK05286 dihydroorotate dehydr 87.4 11 0.00025 37.5 13.0 125 186-316 155-318 (344)
122 cd04731 HisF The cyclase subun 87.4 17 0.00036 34.2 13.5 130 176-315 72-222 (243)
123 TIGR00007 phosphoribosylformim 87.3 14 0.0003 34.3 12.8 121 183-315 80-217 (230)
124 PRK07998 gatY putative fructos 87.1 16 0.00035 35.4 13.3 117 192-316 88-229 (283)
125 TIGR01305 GMP_reduct_1 guanosi 86.9 35 0.00075 34.0 16.9 129 185-345 78-221 (343)
126 TIGR03572 WbuZ glycosyl amidat 86.9 13 0.00028 34.7 12.4 126 180-315 79-226 (232)
127 cd00381 IMPDH IMPDH: The catal 86.6 36 0.00077 33.7 16.1 117 189-315 94-225 (325)
128 PRK14024 phosphoribosyl isomer 86.4 12 0.00027 35.2 12.1 123 182-315 82-221 (241)
129 cd00956 Transaldolase_FSA Tran 86.4 23 0.00049 32.8 13.5 115 218-344 41-166 (211)
130 cd03174 DRE_TIM_metallolyase D 86.3 30 0.00064 32.6 16.2 170 186-368 17-220 (265)
131 PRK08195 4-hyroxy-2-oxovalerat 86.2 13 0.00029 37.0 12.6 101 237-344 19-136 (337)
132 PTZ00314 inosine-5'-monophosph 85.9 47 0.001 35.0 17.0 119 191-319 243-376 (495)
133 PRK13587 1-(5-phosphoribosyl)- 85.9 17 0.00036 34.2 12.5 116 192-315 89-220 (234)
134 TIGR02320 PEP_mutase phosphoen 85.3 30 0.00066 33.6 14.3 105 185-291 89-216 (285)
135 cd07940 DRE_TIM_IPMS 2-isoprop 85.3 10 0.00022 36.4 11.0 103 239-347 16-138 (268)
136 PF01081 Aldolase: KDPG and KH 85.0 18 0.00039 33.2 11.8 143 182-345 14-157 (196)
137 PTZ00314 inosine-5'-monophosph 84.9 21 0.00045 37.6 13.9 109 231-348 229-356 (495)
138 cd06556 ICL_KPHMT Members of t 84.4 13 0.00028 35.2 10.9 95 186-291 87-196 (240)
139 TIGR03128 RuMP_HxlA 3-hexulose 84.3 9.5 0.00021 34.7 10.0 96 239-342 8-108 (206)
140 TIGR01769 GGGP geranylgeranylg 84.1 8.5 0.00018 35.5 9.4 71 240-315 131-204 (205)
141 PRK06806 fructose-bisphosphate 84.1 12 0.00027 36.2 10.9 57 283-340 71-132 (281)
142 PLN02411 12-oxophytodienoate r 83.8 27 0.00059 35.5 13.8 123 190-315 167-341 (391)
143 PRK12738 kbaY tagatose-bisphos 83.7 15 0.00032 35.8 11.2 56 283-339 71-131 (286)
144 cd00947 TBP_aldolase_IIB Tagat 83.5 13 0.00028 36.0 10.8 56 283-339 66-126 (276)
145 cd02809 alpha_hydroxyacid_oxid 83.4 44 0.00096 32.5 14.8 108 241-356 127-247 (299)
146 cd04729 NanE N-acetylmannosami 83.0 39 0.00084 31.2 14.4 109 192-315 83-205 (219)
147 cd07939 DRE_TIM_NifV Streptomy 82.8 29 0.00062 33.0 12.9 104 238-348 15-135 (259)
148 PRK06801 hypothetical protein; 82.4 20 0.00044 34.8 11.7 56 283-339 71-131 (286)
149 TIGR01859 fruc_bis_ald_ fructo 82.3 16 0.00035 35.4 11.1 57 283-340 70-132 (282)
150 PRK12737 gatY tagatose-bisphos 82.2 14 0.0003 36.0 10.4 57 283-340 71-132 (284)
151 TIGR01302 IMP_dehydrog inosine 82.2 44 0.00096 34.7 14.9 118 189-316 224-356 (450)
152 PRK11858 aksA trans-homoaconit 82.2 24 0.00051 35.8 12.6 106 235-347 14-140 (378)
153 TIGR01303 IMP_DH_rel_1 IMP deh 81.7 51 0.0011 34.5 15.1 117 189-315 225-356 (475)
154 PRK07709 fructose-bisphosphate 81.7 21 0.00045 34.7 11.5 115 192-316 91-233 (285)
155 PF13714 PEP_mutase: Phosphoen 81.6 17 0.00037 34.3 10.6 124 183-315 79-218 (238)
156 PRK09195 gatY tagatose-bisphos 81.4 24 0.00053 34.2 11.8 56 283-339 71-131 (284)
157 PRK08318 dihydropyrimidine deh 81.2 38 0.00083 34.6 14.0 153 177-337 101-309 (420)
158 TIGR02090 LEU1_arch isopropylm 81.1 27 0.00058 35.2 12.5 103 235-344 10-133 (363)
159 TIGR01858 tag_bisphos_ald clas 81.1 26 0.00057 34.0 11.9 56 283-339 69-129 (282)
160 TIGR02660 nifV_homocitr homoci 80.9 31 0.00066 34.7 12.9 106 235-347 11-137 (365)
161 cd04728 ThiG Thiazole synthase 80.4 54 0.0012 31.1 13.5 122 181-316 69-204 (248)
162 TIGR01858 tag_bisphos_ald clas 80.4 34 0.00074 33.2 12.4 115 192-316 86-230 (282)
163 PRK12330 oxaloacetate decarbox 80.4 82 0.0018 33.2 19.3 178 185-368 24-230 (499)
164 PRK12737 gatY tagatose-bisphos 80.0 24 0.00052 34.3 11.2 115 192-316 88-232 (284)
165 PRK09195 gatY tagatose-bisphos 79.9 24 0.00052 34.3 11.2 115 192-316 88-232 (284)
166 PRK12738 kbaY tagatose-bisphos 79.9 37 0.00081 33.0 12.5 115 192-316 88-232 (286)
167 PRK00208 thiG thiazole synthas 79.5 58 0.0013 30.9 13.5 121 181-316 69-204 (250)
168 cd04722 TIM_phosphate_binding 79.4 42 0.00091 29.3 13.1 112 194-315 77-198 (200)
169 PLN02979 glycolate oxidase 79.4 74 0.0016 32.1 16.4 85 268-358 209-300 (366)
170 PF04551 GcpE: GcpE protein; 79.3 8.2 0.00018 38.4 7.8 99 241-344 29-139 (359)
171 PRK07709 fructose-bisphosphate 79.2 30 0.00066 33.6 11.7 54 286-340 77-135 (285)
172 TIGR03128 RuMP_HxlA 3-hexulose 79.1 34 0.00074 31.0 11.7 125 181-318 5-135 (206)
173 TIGR02321 Pphn_pyruv_hyd phosp 78.9 67 0.0015 31.3 14.5 105 183-291 85-210 (290)
174 TIGR03217 4OH_2_O_val_ald 4-hy 78.7 42 0.00091 33.4 12.8 141 194-338 93-246 (333)
175 PRK06801 hypothetical protein; 78.4 34 0.00073 33.3 11.7 121 192-317 88-234 (286)
176 PRK05835 fructose-bisphosphate 78.3 40 0.00086 33.2 12.2 55 284-339 71-131 (307)
177 PRK14114 1-(5-phosphoribosyl)- 78.2 31 0.00067 32.6 11.2 109 192-307 86-209 (241)
178 PRK05567 inosine 5'-monophosph 78.1 35 0.00075 35.8 12.7 122 229-357 214-352 (486)
179 cd02812 PcrB_like PcrB_like pr 77.4 19 0.00041 33.6 9.3 79 232-315 124-203 (219)
180 PLN02274 inosine-5'-monophosph 77.1 66 0.0014 34.0 14.3 112 191-315 250-379 (505)
181 TIGR00167 cbbA ketose-bisphosp 76.9 45 0.00097 32.5 12.1 54 286-340 77-135 (288)
182 PRK08610 fructose-bisphosphate 76.9 27 0.00059 33.9 10.6 53 287-340 78-135 (286)
183 PRK08610 fructose-bisphosphate 76.9 37 0.0008 33.0 11.5 115 192-316 91-233 (286)
184 cd00452 KDPG_aldolase KDPG and 76.9 56 0.0012 29.4 15.7 139 183-343 11-150 (190)
185 PRK06843 inosine 5-monophospha 76.5 95 0.0021 31.8 15.6 127 176-315 142-284 (404)
186 PRK07315 fructose-bisphosphate 76.4 36 0.00077 33.2 11.4 54 286-340 77-134 (293)
187 PRK09282 pyruvate carboxylase 76.3 1E+02 0.0022 33.3 15.6 129 191-320 99-233 (592)
188 PF00977 His_biosynth: Histidi 76.1 7.7 0.00017 36.3 6.5 115 192-314 86-218 (229)
189 TIGR01303 IMP_DH_rel_1 IMP deh 76.1 70 0.0015 33.5 14.1 61 286-348 266-340 (475)
190 cd06660 Aldo_ket_red Aldo-keto 76.0 73 0.0016 30.2 14.3 160 186-347 27-203 (285)
191 cd07944 DRE_TIM_HOA_like 4-hyd 75.8 56 0.0012 31.3 12.5 51 240-290 135-187 (266)
192 TIGR01302 IMP_dehydrog inosine 75.7 62 0.0014 33.6 13.6 110 230-348 211-339 (450)
193 PRK07998 gatY putative fructos 75.7 42 0.00092 32.6 11.5 56 283-339 71-131 (283)
194 PRK12857 fructose-1,6-bisphosp 75.7 41 0.00089 32.7 11.5 56 283-339 71-131 (284)
195 PRK07107 inosine 5-monophospha 75.5 45 0.00098 35.2 12.6 67 241-315 239-311 (502)
196 PRK07807 inosine 5-monophospha 75.5 70 0.0015 33.6 13.9 61 286-348 268-342 (479)
197 TIGR01521 FruBisAldo_II_B fruc 75.3 29 0.00063 34.7 10.5 55 284-339 70-137 (347)
198 PRK07114 keto-hydroxyglutarate 75.3 72 0.0016 29.8 16.3 140 184-345 23-167 (222)
199 PRK15108 biotin synthase; Prov 75.1 45 0.00098 33.3 12.0 102 241-345 77-193 (345)
200 cd02811 IDI-2_FMN Isopentenyl- 74.9 91 0.002 30.8 15.0 138 218-357 101-276 (326)
201 PRK08195 4-hyroxy-2-oxovalerat 74.6 59 0.0013 32.4 12.7 141 194-338 94-247 (337)
202 PRK12857 fructose-1,6-bisphosp 74.4 47 0.001 32.3 11.5 115 192-316 88-232 (284)
203 PRK08185 hypothetical protein; 74.3 36 0.00079 33.0 10.7 57 283-340 65-126 (283)
204 PRK07807 inosine 5-monophospha 74.1 22 0.00048 37.2 9.8 116 189-315 227-358 (479)
205 cd06557 KPHMT-like Ketopantoat 74.0 26 0.00056 33.5 9.5 94 186-290 88-197 (254)
206 PRK09140 2-dehydro-3-deoxy-6-p 73.7 59 0.0013 29.9 11.6 94 241-348 20-116 (206)
207 PRK09234 fbiC FO synthase; Rev 73.6 22 0.00049 39.9 10.2 127 186-345 558-688 (843)
208 PLN02925 4-hydroxy-3-methylbut 73.6 28 0.00061 37.8 10.4 99 241-344 108-231 (733)
209 PRK09196 fructose-1,6-bisphosp 73.5 46 0.00099 33.3 11.3 56 284-340 72-140 (347)
210 PRK12581 oxaloacetate decarbox 73.5 1.2E+02 0.0027 31.6 16.6 177 185-368 32-236 (468)
211 PF00682 HMGL-like: HMGL-like 73.1 28 0.00061 32.3 9.6 111 238-355 9-140 (237)
212 PRK13399 fructose-1,6-bisphosp 73.1 35 0.00076 34.1 10.4 56 284-340 72-140 (347)
213 cd03332 LMO_FMN L-Lactate 2-mo 73.1 1.1E+02 0.0024 31.0 14.3 83 269-357 240-329 (383)
214 PRK05437 isopentenyl pyrophosp 72.9 1.1E+02 0.0023 30.7 14.6 100 216-316 107-217 (352)
215 cd07948 DRE_TIM_HCS Saccharomy 72.9 46 0.00099 31.9 11.0 98 239-343 18-132 (262)
216 TIGR00167 cbbA ketose-bisphosp 72.9 45 0.00098 32.5 11.0 111 192-310 91-231 (288)
217 PLN02858 fructose-bisphosphate 72.7 44 0.00095 39.8 12.7 105 233-340 1115-1227(1378)
218 COG0800 Eda 2-keto-3-deoxy-6-p 72.6 81 0.0018 29.2 13.8 143 182-345 19-162 (211)
219 cd00947 TBP_aldolase_IIB Tagat 72.4 52 0.0011 31.9 11.2 113 193-315 84-225 (276)
220 cd07943 DRE_TIM_HOA 4-hydroxy- 72.4 68 0.0015 30.5 12.2 97 194-291 91-190 (263)
221 PRK00694 4-hydroxy-3-methylbut 72.3 34 0.00074 36.3 10.4 99 241-344 43-166 (606)
222 PF04131 NanE: Putative N-acet 72.0 55 0.0012 29.8 10.5 109 191-313 54-171 (192)
223 cd04726 KGPDC_HPS 3-Keto-L-gul 71.9 21 0.00045 32.2 8.2 95 239-341 9-108 (202)
224 cd04723 HisA_HisF Phosphoribos 71.7 55 0.0012 30.6 11.1 114 192-314 91-216 (233)
225 PRK00278 trpC indole-3-glycero 71.6 51 0.0011 31.5 11.0 93 246-343 73-167 (260)
226 PRK05567 inosine 5'-monophosph 71.1 1.3E+02 0.0027 31.6 14.7 115 191-315 230-359 (486)
227 PLN02746 hydroxymethylglutaryl 70.2 48 0.0011 33.2 10.8 93 239-340 64-179 (347)
228 PRK14041 oxaloacetate decarbox 70.0 1.5E+02 0.0032 31.1 16.7 133 187-320 93-232 (467)
229 PRK09282 pyruvate carboxylase 70.0 1.7E+02 0.0036 31.7 16.5 177 185-368 23-227 (592)
230 TIGR01520 FruBisAldo_II_A fruc 69.5 47 0.001 33.3 10.4 141 184-340 9-170 (357)
231 TIGR01235 pyruv_carbox pyruvat 69.1 2.4E+02 0.0051 33.1 17.5 133 187-320 623-768 (1143)
232 PF00478 IMPDH: IMP dehydrogen 69.1 1E+02 0.0022 31.0 12.7 94 246-345 110-220 (352)
233 PRK12331 oxaloacetate decarbox 69.0 1.5E+02 0.0033 30.8 17.4 177 185-368 23-227 (448)
234 PRK07084 fructose-bisphosphate 68.9 39 0.00084 33.4 9.6 54 286-340 85-143 (321)
235 CHL00200 trpA tryptophan synth 68.9 1.1E+02 0.0024 29.3 15.5 92 176-268 17-156 (263)
236 PRK12999 pyruvate carboxylase; 68.7 1.7E+02 0.0036 34.4 16.1 150 187-337 625-791 (1146)
237 PRK12331 oxaloacetate decarbox 68.6 1.5E+02 0.0033 30.8 17.4 127 191-318 99-231 (448)
238 cd03174 DRE_TIM_metallolyase D 68.6 96 0.0021 29.0 12.3 67 192-258 78-161 (265)
239 PRK00311 panB 3-methyl-2-oxobu 68.2 49 0.0011 31.8 10.0 94 186-290 91-200 (264)
240 PRK02048 4-hydroxy-3-methylbut 68.1 42 0.00091 35.9 10.1 99 241-344 39-162 (611)
241 PLN02493 probable peroxisomal 68.0 1.4E+02 0.0031 30.1 14.3 83 269-357 211-300 (367)
242 PF00682 HMGL-like: HMGL-like 67.8 60 0.0013 30.1 10.5 69 222-290 116-185 (237)
243 PRK14042 pyruvate carboxylase 67.3 1.9E+02 0.0041 31.3 18.8 176 186-368 24-227 (596)
244 PRK09389 (R)-citramalate synth 67.3 93 0.002 32.7 12.7 103 235-344 12-135 (488)
245 KOG0053 Cystathionine beta-lya 67.1 11 0.00024 38.4 5.5 66 247-319 154-223 (409)
246 PRK00694 4-hydroxy-3-methylbut 67.0 1.8E+02 0.004 31.1 15.9 141 185-339 42-203 (606)
247 COG0159 TrpA Tryptophan syntha 66.7 1.3E+02 0.0027 29.0 15.2 95 176-270 19-161 (265)
248 PRK05692 hydroxymethylglutaryl 65.9 87 0.0019 30.4 11.5 93 239-340 22-137 (287)
249 PF01116 F_bP_aldolase: Fructo 65.8 17 0.00036 35.4 6.4 57 283-340 70-131 (287)
250 cd07937 DRE_TIM_PC_TC_5S Pyruv 65.2 1.3E+02 0.0029 28.8 17.4 177 185-368 18-222 (275)
251 TIGR01919 hisA-trpF 1-(5-phosp 65.0 1.1E+02 0.0024 28.8 11.7 117 192-315 87-224 (243)
252 PRK14042 pyruvate carboxylase 64.8 2.1E+02 0.0045 30.9 17.8 148 187-337 94-254 (596)
253 PRK09261 phospho-2-dehydro-3-d 64.6 66 0.0014 32.2 10.3 125 230-363 54-207 (349)
254 cd00452 KDPG_aldolase KDPG and 64.6 93 0.002 27.9 10.8 91 241-345 14-106 (190)
255 PRK08185 hypothetical protein; 64.6 1.1E+02 0.0024 29.7 11.7 119 192-316 82-228 (283)
256 PRK08508 biotin synthase; Prov 64.5 1E+02 0.0022 29.7 11.6 22 322-343 136-157 (279)
257 TIGR02129 hisA_euk phosphoribo 64.4 96 0.0021 29.6 11.1 119 192-316 88-233 (253)
258 COG0821 gcpE 1-hydroxy-2-methy 64.4 1.6E+02 0.0034 29.4 14.4 132 186-338 34-168 (361)
259 PRK13111 trpA tryptophan synth 64.2 1.4E+02 0.003 28.6 15.8 166 176-348 14-212 (258)
260 PRK07084 fructose-bisphosphate 64.1 1.2E+02 0.0027 30.0 12.0 96 192-294 99-225 (321)
261 cd07939 DRE_TIM_NifV Streptomy 64.1 1.2E+02 0.0027 28.6 12.0 29 225-253 150-178 (259)
262 PF05570 DUF765: Circovirus pr 63.6 3.9 8.4E-05 24.3 0.9 13 22-34 1-13 (29)
263 PLN02446 (5-phosphoribosyl)-5- 63.3 1.4E+02 0.0031 28.6 12.1 121 192-317 95-240 (262)
264 COG1038 PycA Pyruvate carboxyl 63.0 1.3E+02 0.0029 33.5 12.7 128 187-315 628-768 (1149)
265 PLN02389 biotin synthase 62.7 1.3E+02 0.0027 30.6 12.3 24 322-345 212-235 (379)
266 PRK12999 pyruvate carboxylase; 62.7 2.8E+02 0.0061 32.6 16.4 176 186-368 553-764 (1146)
267 cd00381 IMPDH IMPDH: The catal 62.6 1.7E+02 0.0036 29.0 15.6 69 287-357 136-218 (325)
268 cd04737 LOX_like_FMN L-Lactate 62.6 1.7E+02 0.0038 29.3 13.6 78 270-353 209-293 (351)
269 PLN02274 inosine-5'-monophosph 62.5 88 0.0019 33.0 11.5 116 231-354 236-369 (505)
270 PRK08508 biotin synthase; Prov 62.5 1.5E+02 0.0033 28.5 13.1 63 185-248 40-108 (279)
271 PLN02495 oxidoreductase, actin 62.5 1.2E+02 0.0027 30.8 12.1 85 217-303 101-201 (385)
272 PRK05835 fructose-bisphosphate 62.4 96 0.0021 30.5 10.9 100 192-300 88-218 (307)
273 cd00958 DhnA Class I fructose- 61.8 1.4E+02 0.0029 27.7 13.7 121 185-313 73-211 (235)
274 PRK13957 indole-3-glycerol-pho 61.4 1.2E+02 0.0026 28.9 11.0 97 246-347 64-162 (247)
275 PRK05718 keto-hydroxyglutarate 61.2 1.4E+02 0.003 27.7 15.4 142 182-345 21-164 (212)
276 TIGR01108 oadA oxaloacetate de 61.2 2.4E+02 0.0052 30.4 17.6 148 190-338 93-250 (582)
277 cd02809 alpha_hydroxyacid_oxid 61.0 1.7E+02 0.0036 28.5 12.9 120 186-315 127-255 (299)
278 cd07937 DRE_TIM_PC_TC_5S Pyruv 60.5 1.6E+02 0.0035 28.2 17.5 101 191-291 94-197 (275)
279 PLN02321 2-isopropylmalate syn 59.9 76 0.0017 34.5 10.6 109 235-345 96-233 (632)
280 PRK14040 oxaloacetate decarbox 59.5 2.6E+02 0.0056 30.2 18.6 164 185-353 24-215 (593)
281 cd04736 MDH_FMN Mandelate dehy 59.3 50 0.0011 33.3 8.6 82 270-359 224-312 (361)
282 PRK02048 4-hydroxy-3-methylbut 59.0 2.5E+02 0.0053 30.3 13.8 140 185-338 38-198 (611)
283 COG2513 PrpB PEP phosphonomuta 58.9 1.8E+02 0.0039 28.3 12.8 103 182-291 87-207 (289)
284 PRK14041 oxaloacetate decarbox 58.7 2.4E+02 0.0051 29.5 16.2 177 185-368 22-226 (467)
285 COG2022 ThiG Uncharacterized e 58.3 1.7E+02 0.0036 27.7 12.0 143 181-337 76-229 (262)
286 TIGR00973 leuA_bact 2-isopropy 57.9 60 0.0013 34.1 9.3 107 235-347 11-141 (494)
287 PF00248 Aldo_ket_red: Aldo/ke 57.3 1.7E+02 0.0036 27.7 11.7 162 185-348 14-193 (283)
288 PLN02591 tryptophan synthase 57.1 1.8E+02 0.0039 27.7 15.7 28 241-268 116-143 (250)
289 PRK05458 guanosine 5'-monophos 56.7 2.1E+02 0.0046 28.4 17.2 137 186-357 70-222 (326)
290 PRK09197 fructose-bisphosphate 56.3 99 0.0022 31.0 9.9 58 283-340 89-163 (350)
291 cd04726 KGPDC_HPS 3-Keto-L-gul 55.4 1.5E+02 0.0034 26.4 11.9 110 193-315 69-185 (202)
292 PRK07094 biotin synthase; Prov 55.4 1.9E+02 0.0041 28.2 12.0 23 322-344 164-186 (323)
293 PRK12330 oxaloacetate decarbox 55.2 2.8E+02 0.006 29.3 17.9 147 190-337 99-257 (499)
294 COG0191 Fba Fructose/tagatose 55.0 66 0.0014 31.2 8.2 57 283-340 72-133 (286)
295 PRK09196 fructose-1,6-bisphosp 54.9 2.3E+02 0.005 28.4 12.3 94 193-293 90-233 (347)
296 TIGR01521 FruBisAldo_II_B fruc 54.9 1.5E+02 0.0033 29.6 11.0 96 192-294 87-232 (347)
297 cd07941 DRE_TIM_LeuA3 Desulfob 54.3 1.7E+02 0.0037 28.0 11.2 102 237-344 14-140 (273)
298 cd00453 FTBP_aldolase_II Fruct 53.2 74 0.0016 31.7 8.4 58 283-340 82-156 (340)
299 PRK13398 3-deoxy-7-phosphohept 53.1 1.8E+02 0.0039 27.9 11.0 75 252-337 87-162 (266)
300 TIGR00612 ispG_gcpE 1-hydroxy- 52.6 2.5E+02 0.0054 28.0 14.8 134 185-338 31-166 (346)
301 PRK00366 ispG 4-hydroxy-3-meth 52.6 2.6E+02 0.0056 28.1 15.3 133 186-338 40-175 (360)
302 PLN02535 glycolate oxidase 52.3 2.6E+02 0.0057 28.2 16.6 83 269-357 210-299 (364)
303 PRK07535 methyltetrahydrofolat 52.2 2.2E+02 0.0048 27.2 13.3 148 185-343 22-196 (261)
304 PRK12755 phospho-2-dehydro-3-d 52.2 1.2E+02 0.0026 30.4 9.7 124 231-363 56-208 (353)
305 TIGR01520 FruBisAldo_II_A fruc 52.1 2.2E+02 0.0047 28.7 11.5 110 201-316 135-287 (357)
306 PRK12756 phospho-2-dehydro-3-d 52.0 1.8E+02 0.004 29.0 10.9 122 232-363 55-206 (348)
307 CHL00162 thiG thiamin biosynth 51.6 2.3E+02 0.0049 27.2 14.4 126 180-316 76-218 (267)
308 PF00478 IMPDH: IMP dehydrogen 51.5 1.5E+02 0.0032 29.9 10.3 130 176-317 97-241 (352)
309 PRK03620 5-dehydro-4-deoxygluc 51.3 2.4E+02 0.0052 27.4 18.0 153 186-343 26-190 (303)
310 PRK06256 biotin synthase; Vali 51.2 1.9E+02 0.004 28.5 11.2 24 322-345 186-209 (336)
311 TIGR01859 fruc_bis_ald_ fructo 51.1 2.4E+02 0.0052 27.3 13.9 121 192-318 88-232 (282)
312 PF05690 ThiG: Thiazole biosyn 50.9 2.2E+02 0.0048 26.9 11.8 127 180-317 68-205 (247)
313 cd00956 Transaldolase_FSA Tran 50.8 1.5E+02 0.0032 27.4 9.7 119 184-315 60-184 (211)
314 PF01116 F_bP_aldolase: Fructo 50.6 1.6E+02 0.0035 28.6 10.3 109 191-308 86-228 (287)
315 PRK12344 putative alpha-isopro 50.4 2E+02 0.0043 30.6 11.8 104 235-344 15-147 (524)
316 cd00946 FBP_aldolase_IIA Class 50.1 1.7E+02 0.0036 29.3 10.5 57 283-340 84-158 (345)
317 PRK13399 fructose-1,6-bisphosp 50.0 2.7E+02 0.0058 27.9 11.9 96 193-295 90-235 (347)
318 cd00946 FBP_aldolase_IIA Class 49.9 2.8E+02 0.0061 27.8 12.0 119 192-316 114-275 (345)
319 TIGR02090 LEU1_arch isopropylm 49.1 2.9E+02 0.0063 27.7 12.5 63 191-254 115-181 (363)
320 PF00218 IGPS: Indole-3-glycer 48.9 71 0.0015 30.5 7.4 94 246-344 71-166 (254)
321 COG1167 ARO8 Transcriptional r 48.3 1E+02 0.0023 31.9 9.2 97 242-344 164-268 (459)
322 TIGR01108 oadA oxaloacetate de 47.9 3.9E+02 0.0084 28.8 16.8 164 185-353 18-209 (582)
323 cd00331 IGPS Indole-3-glycerol 47.5 1.1E+02 0.0024 28.0 8.4 108 229-343 10-128 (217)
324 cd07948 DRE_TIM_HCS Saccharomy 47.5 2.6E+02 0.0056 26.7 14.9 15 78-92 3-17 (262)
325 TIGR01768 GGGP-family geranylg 46.5 78 0.0017 29.6 7.1 68 240-315 132-207 (223)
326 PRK05927 hypothetical protein; 46.3 3E+02 0.0064 27.6 11.8 128 185-345 76-207 (350)
327 PF05913 DUF871: Bacterial pro 46.1 43 0.00093 33.7 5.7 143 186-340 12-173 (357)
328 PF00701 DHDPS: Dihydrodipicol 45.1 2.9E+02 0.0062 26.5 12.4 152 186-342 20-186 (289)
329 COG1453 Predicted oxidoreducta 45.1 3.4E+02 0.0075 27.4 12.4 57 286-342 143-202 (391)
330 COG0107 HisF Imidazoleglycerol 45.1 1.4E+02 0.003 28.2 8.3 153 176-339 75-253 (256)
331 PLN02925 4-hydroxy-3-methylbut 44.3 4.7E+02 0.01 28.8 15.7 139 186-338 108-267 (733)
332 COG2896 MoaA Molybdenum cofact 44.2 1.9E+02 0.0042 28.6 9.7 74 191-264 101-188 (322)
333 PRK06806 fructose-bisphosphate 43.3 3.2E+02 0.0068 26.5 15.2 119 192-317 88-231 (281)
334 PRK13586 1-(5-phosphoribosyl)- 43.1 2.8E+02 0.0062 25.9 12.6 113 192-313 86-215 (232)
335 TIGR00433 bioB biotin syntheta 42.3 3.1E+02 0.0068 26.1 11.3 24 322-345 157-180 (296)
336 PF09872 DUF2099: Uncharacteri 42.2 1.2E+02 0.0027 28.7 7.6 58 194-253 155-213 (258)
337 cd02940 DHPD_FMN Dihydropyrimi 42.2 3.3E+02 0.0071 26.4 15.1 97 216-314 86-198 (299)
338 PRK04128 1-(5-phosphoribosyl)- 42.0 2.9E+02 0.0063 25.7 13.6 126 176-316 74-212 (228)
339 PRK07455 keto-hydroxyglutarate 41.9 2.6E+02 0.0057 25.1 16.1 139 183-344 19-160 (187)
340 cd07945 DRE_TIM_CMS Leptospira 41.6 1.8E+02 0.0038 28.1 9.1 100 239-344 15-136 (280)
341 PRK14863 bifunctional regulato 41.4 3.3E+02 0.0073 26.2 11.4 153 186-346 30-195 (292)
342 PRK11197 lldD L-lactate dehydr 40.9 2.2E+02 0.0048 28.9 9.9 81 270-358 233-322 (381)
343 PRK07315 fructose-bisphosphate 40.8 3.5E+02 0.0076 26.3 14.2 122 192-318 90-234 (293)
344 PRK14040 oxaloacetate decarbox 40.8 5E+02 0.011 28.1 16.0 130 191-321 100-235 (593)
345 TIGR01290 nifB nitrogenase cof 40.2 1.5E+02 0.0032 30.8 8.7 64 185-248 60-129 (442)
346 cd00951 KDGDH 5-dehydro-4-deox 40.0 3.5E+02 0.0076 26.0 17.8 149 186-343 19-183 (289)
347 TIGR01496 DHPS dihydropteroate 39.9 3.4E+02 0.0073 25.8 14.2 63 185-247 20-93 (257)
348 PRK04180 pyridoxal biosynthesi 39.8 2.1E+02 0.0046 27.9 9.0 105 195-316 31-148 (293)
349 PRK13361 molybdenum cofactor b 38.7 3.9E+02 0.0085 26.2 12.7 133 185-340 45-187 (329)
350 PF01180 DHO_dh: Dihydroorotat 38.7 2.7E+02 0.0059 26.8 10.0 138 175-316 96-273 (295)
351 cd00245 Glm_e Coenzyme B12-dep 38.5 3E+02 0.0066 28.4 10.5 138 192-340 5-167 (428)
352 cd00739 DHPS DHPS subgroup of 38.4 3.4E+02 0.0073 25.8 10.4 98 235-341 16-125 (257)
353 PRK07455 keto-hydroxyglutarate 38.2 3E+02 0.0065 24.7 10.3 93 241-345 22-114 (187)
354 COG0042 tRNA-dihydrouridine sy 38.1 1.6E+02 0.0036 29.0 8.4 69 182-252 145-220 (323)
355 TIGR00126 deoC deoxyribose-pho 37.6 3.3E+02 0.0072 25.1 16.9 121 184-309 66-198 (211)
356 PRK12581 oxaloacetate decarbox 37.6 5E+02 0.011 27.2 17.6 99 193-291 110-211 (468)
357 PRK11840 bifunctional sulfur c 37.4 4.3E+02 0.0092 26.3 16.0 140 180-335 142-294 (326)
358 PRK09240 thiH thiamine biosynt 37.2 2.1E+02 0.0045 28.9 9.1 67 185-258 104-175 (371)
359 TIGR00343 pyridoxal 5'-phospha 37.1 2.8E+02 0.006 27.0 9.4 86 215-317 54-142 (287)
360 PF04551 GcpE: GcpE protein; 36.8 2.7E+02 0.0058 28.0 9.4 112 181-299 24-144 (359)
361 PRK09722 allulose-6-phosphate 36.8 2.4E+02 0.0051 26.5 8.8 132 178-316 62-197 (229)
362 PF00290 Trp_syntA: Tryptophan 36.7 3.9E+02 0.0084 25.6 13.4 138 176-315 12-225 (259)
363 PRK10060 RNase II stability mo 36.7 2.5E+02 0.0055 30.5 10.4 108 238-348 503-622 (663)
364 TIGR00262 trpA tryptophan synt 36.5 3.8E+02 0.0082 25.4 13.6 114 191-315 105-226 (256)
365 COG0656 ARA1 Aldo/keto reducta 36.4 4.1E+02 0.0089 25.8 12.6 150 188-346 28-193 (280)
366 PRK13361 molybdenum cofactor b 36.3 2.7E+02 0.0059 27.3 9.7 75 192-267 105-193 (329)
367 cd07947 DRE_TIM_Re_CS Clostrid 36.2 3.7E+02 0.0081 25.9 10.4 97 240-343 18-135 (279)
368 PRK01033 imidazole glycerol ph 36.1 3.8E+02 0.0083 25.3 12.6 149 190-347 32-207 (258)
369 TIGR00190 thiC thiamine biosyn 35.8 4.9E+02 0.011 26.6 11.2 142 163-344 121-264 (423)
370 cd06556 ICL_KPHMT Members of t 35.7 3.8E+02 0.0083 25.2 11.7 73 212-291 56-130 (240)
371 COG0134 TrpC Indole-3-glycerol 35.6 1.4E+02 0.003 28.6 7.0 91 248-343 71-163 (254)
372 PRK12822 phospho-2-dehydro-3-d 35.0 4.8E+02 0.01 26.2 11.8 120 234-363 58-207 (356)
373 PRK00748 1-(5-phosphoribosyl)- 34.8 3.6E+02 0.0078 24.7 9.9 62 269-337 61-122 (233)
374 PF12040 DUF3526: Domain of un 34.6 86 0.0019 27.3 5.2 48 218-276 4-51 (156)
375 TIGR02666 moaA molybdenum cofa 34.6 3E+02 0.0065 27.0 9.8 72 193-264 104-190 (334)
376 cd00453 FTBP_aldolase_II Fruct 34.6 4.8E+02 0.01 26.1 11.1 120 192-317 101-273 (340)
377 PRK07360 FO synthase subunit 2 34.5 3.1E+02 0.0068 27.5 10.0 107 240-348 91-226 (371)
378 cd00423 Pterin_binding Pterin 33.9 3.1E+02 0.0067 25.9 9.4 58 281-344 71-128 (258)
379 TIGR00510 lipA lipoate synthas 33.8 4.6E+02 0.01 25.6 12.0 156 186-344 92-282 (302)
380 PRK08883 ribulose-phosphate 3- 33.7 3.9E+02 0.0085 24.7 9.9 130 177-315 60-194 (220)
381 PF01408 GFO_IDH_MocA: Oxidore 33.5 1.9E+02 0.0041 23.2 6.9 106 216-342 12-119 (120)
382 cd07945 DRE_TIM_CMS Leptospira 33.5 4.5E+02 0.0097 25.3 10.6 43 212-254 145-187 (280)
383 PRK00915 2-isopropylmalate syn 33.4 6E+02 0.013 26.8 13.2 121 235-358 14-155 (513)
384 TIGR01306 GMP_reduct_2 guanosi 33.4 4.9E+02 0.011 25.8 15.3 115 191-316 96-227 (321)
385 COG1060 ThiH Thiamine biosynth 33.3 2.5E+02 0.0055 28.4 8.9 126 185-343 90-219 (370)
386 cd04732 HisA HisA. Phosphorib 33.3 2.1E+02 0.0045 26.3 7.9 61 270-337 61-121 (234)
387 PRK05692 hydroxymethylglutaryl 33.2 4.6E+02 0.0099 25.4 14.9 79 239-318 151-233 (287)
388 PF01136 Peptidase_U32: Peptid 32.9 1.6E+02 0.0035 27.1 7.2 78 189-279 3-80 (233)
389 TIGR03551 F420_cofH 7,8-dideme 32.8 3.8E+02 0.0083 26.5 10.2 43 212-255 71-115 (343)
390 COG0107 HisF Imidazoleglycerol 32.8 1.5E+02 0.0032 28.0 6.5 57 283-342 71-127 (256)
391 TIGR01496 DHPS dihydropteroate 32.6 3.7E+02 0.0081 25.5 9.6 93 240-341 20-123 (257)
392 COG3010 NanE Putative N-acetyl 32.0 4.2E+02 0.0092 24.6 9.6 110 191-315 88-208 (229)
393 PLN02460 indole-3-glycerol-pho 31.8 2.8E+02 0.0061 27.7 8.7 93 247-344 143-238 (338)
394 KOG2368 Hydroxymethylglutaryl- 31.6 4E+02 0.0087 25.1 9.0 45 314-358 121-175 (316)
395 PF01070 FMN_dh: FMN-dependent 31.5 2E+02 0.0042 28.9 7.8 85 269-359 212-303 (356)
396 TIGR01305 GMP_reduct_1 guanosi 31.5 5.4E+02 0.012 25.7 15.7 119 190-316 108-241 (343)
397 PLN02389 biotin synthase 31.3 5.7E+02 0.012 25.9 13.9 24 184-207 115-138 (379)
398 TIGR00977 LeuA_rel 2-isopropyl 31.2 6.7E+02 0.014 26.7 13.0 104 235-344 11-143 (526)
399 cd00408 DHDPS-like Dihydrodipi 30.9 4.7E+02 0.01 24.8 18.8 150 186-343 16-183 (281)
400 PRK03170 dihydrodipicolinate s 30.9 4.8E+02 0.01 25.0 13.5 138 186-328 20-173 (292)
401 PRK07107 inosine 5-monophospha 30.6 6.7E+02 0.014 26.5 14.2 122 188-315 241-380 (502)
402 PRK09427 bifunctional indole-3 30.4 1.9E+02 0.0041 30.1 7.7 83 261-348 89-171 (454)
403 PF02310 B12-binding: B12 bind 30.2 2.6E+02 0.0056 22.4 7.2 72 273-345 16-90 (121)
404 PRK02506 dihydroorotate dehydr 30.1 5.3E+02 0.011 25.2 13.3 159 177-338 94-298 (310)
405 TIGR00423 radical SAM domain p 30.1 2.2E+02 0.0048 27.7 7.9 71 185-258 36-119 (309)
406 TIGR01036 pyrD_sub2 dihydrooro 29.8 5.6E+02 0.012 25.4 10.7 127 186-315 152-316 (335)
407 cd01310 TatD_DNAse TatD like p 29.8 3.7E+02 0.008 24.5 9.1 16 328-343 113-128 (251)
408 cd04731 HisF The cyclase subun 29.7 3.6E+02 0.0078 25.0 9.0 60 270-336 59-118 (243)
409 cd04728 ThiG Thiazole synthase 29.4 5E+02 0.011 24.7 11.0 152 186-348 21-187 (248)
410 PLN02858 fructose-bisphosphate 29.3 4.5E+02 0.0097 31.6 11.3 118 192-315 1183-1330(1378)
411 TIGR03700 mena_SCO4494 putativ 29.3 4.6E+02 0.01 26.0 10.1 108 240-348 79-213 (351)
412 PTZ00170 D-ribulose-5-phosphat 29.3 4.7E+02 0.01 24.3 11.8 122 184-315 74-200 (228)
413 PRK15063 isocitrate lyase; Pro 29.2 6.6E+02 0.014 26.0 16.2 94 183-279 156-298 (428)
414 PRK11858 aksA trans-homoaconit 29.1 6.1E+02 0.013 25.5 18.9 157 186-351 24-203 (378)
415 cd04729 NanE N-acetylmannosami 29.0 4.5E+02 0.0097 24.0 15.3 143 184-346 23-187 (219)
416 PRK13396 3-deoxy-7-phosphohept 28.8 6.1E+02 0.013 25.5 12.7 143 184-341 111-276 (352)
417 PRK13587 1-(5-phosphoribosyl)- 28.6 2.7E+02 0.0058 26.0 7.8 65 270-341 64-128 (234)
418 PRK07226 fructose-bisphosphate 28.3 5.2E+02 0.011 24.5 13.2 114 190-310 95-226 (267)
419 cd02808 GltS_FMN Glutamate syn 28.2 4.7E+02 0.01 26.5 10.1 84 274-357 201-306 (392)
420 PF01645 Glu_synthase: Conserv 28.2 6.4E+02 0.014 25.5 12.9 114 184-315 184-302 (368)
421 PRK08444 hypothetical protein; 28.2 4.7E+02 0.01 26.2 9.9 29 317-345 183-211 (353)
422 PF01791 DeoC: DeoC/LacD famil 28.1 4.8E+02 0.01 24.1 10.6 111 191-309 79-222 (236)
423 PLN02334 ribulose-phosphate 3- 27.8 4.9E+02 0.011 24.0 11.0 122 182-315 72-201 (229)
424 PLN02951 Molybderin biosynthes 27.7 4.7E+02 0.01 26.3 9.9 74 190-263 148-235 (373)
425 TIGR03551 F420_cofH 7,8-dideme 27.4 3.8E+02 0.0081 26.5 9.1 71 185-258 70-153 (343)
426 PRK13802 bifunctional indole-3 27.3 4.9E+02 0.011 28.7 10.5 93 247-344 74-168 (695)
427 KOG0259 Tyrosine aminotransfer 27.2 1E+02 0.0022 31.3 4.7 46 296-341 187-237 (447)
428 PF02581 TMP-TENI: Thiamine mo 27.2 2E+02 0.0043 25.5 6.4 46 299-345 16-65 (180)
429 PLN02746 hydroxymethylglutaryl 27.2 6.5E+02 0.014 25.2 15.6 20 75-94 46-65 (347)
430 TIGR00034 aroFGH phospho-2-deh 27.0 6.5E+02 0.014 25.2 12.1 122 231-362 50-201 (344)
431 PRK13352 thiamine biosynthesis 26.8 5.6E+02 0.012 26.4 9.9 125 185-343 140-266 (431)
432 TIGR03699 mena_SCO4550 menaqui 26.5 3.7E+02 0.0081 26.4 8.8 104 240-346 72-204 (340)
433 TIGR00343 pyridoxal 5'-phospha 26.3 6.1E+02 0.013 24.7 9.8 41 270-315 185-227 (287)
434 TIGR01949 AroFGH_arch predicte 26.3 5.5E+02 0.012 24.1 12.9 114 190-310 92-222 (258)
435 TIGR01163 rpe ribulose-phospha 26.3 4.7E+02 0.01 23.3 10.7 114 191-315 69-192 (210)
436 PRK05096 guanosine 5'-monophos 25.9 6.8E+02 0.015 25.1 12.9 122 190-315 109-241 (346)
437 PRK12595 bifunctional 3-deoxy- 25.8 6.9E+02 0.015 25.1 12.0 116 241-367 130-257 (360)
438 COG5016 Pyruvate/oxaloacetate 25.8 7.5E+02 0.016 25.5 14.5 124 188-313 98-228 (472)
439 PRK04165 acetyl-CoA decarbonyl 25.7 7.8E+02 0.017 25.7 14.1 143 186-343 103-268 (450)
440 cd07938 DRE_TIM_HMGL 3-hydroxy 25.7 6E+02 0.013 24.3 10.9 60 186-245 147-209 (274)
441 COG1619 LdcA Uncharacterized p 25.4 2.6E+02 0.0057 27.5 7.3 61 187-250 25-95 (313)
442 PRK00164 moaA molybdenum cofac 25.2 5.3E+02 0.012 25.1 9.7 71 193-263 110-194 (331)
443 cd04727 pdxS PdxS is a subunit 25.1 4.3E+02 0.0092 25.7 8.4 97 192-315 123-224 (283)
444 PRK08444 hypothetical protein; 24.6 4E+02 0.0087 26.7 8.6 49 185-233 80-132 (353)
445 smart00052 EAL Putative diguan 24.6 4E+02 0.0087 24.0 8.2 63 284-348 144-214 (241)
446 cd02811 IDI-2_FMN Isopentenyl- 24.5 6.8E+02 0.015 24.6 12.9 29 286-315 255-283 (326)
447 PRK07028 bifunctional hexulose 24.5 7.7E+02 0.017 25.2 17.0 156 180-345 8-171 (430)
448 cd02922 FCB2_FMN Flavocytochro 24.3 7.2E+02 0.016 24.8 15.5 149 201-357 118-292 (344)
449 PRK04180 pyridoxal biosynthesi 24.3 5.3E+02 0.012 25.2 8.9 41 270-315 191-233 (293)
450 cd00959 DeoC 2-deoxyribose-5-p 24.2 5.4E+02 0.012 23.3 18.0 119 186-309 67-197 (203)
451 cd04727 pdxS PdxS is a subunit 24.1 6.2E+02 0.013 24.6 9.3 86 215-317 52-140 (283)
452 TIGR02668 moaA_archaeal probab 23.9 5.8E+02 0.013 24.4 9.5 71 193-263 100-184 (302)
453 PF03932 CutC: CutC family; I 23.8 5.7E+02 0.012 23.4 8.7 129 160-303 48-189 (201)
454 COG2403 Predicted GTPase [Gene 23.7 2.3E+02 0.0049 28.9 6.4 61 284-347 60-120 (449)
455 PRK13307 bifunctional formalde 23.4 3.5E+02 0.0077 27.6 8.0 114 228-351 173-292 (391)
456 COG0119 LeuA Isopropylmalate/h 23.2 8.2E+02 0.018 25.1 10.7 109 235-351 12-147 (409)
457 COG0855 Ppk Polyphosphate kina 23.0 1.8E+02 0.004 31.5 5.9 71 188-259 355-429 (696)
458 PRK05443 polyphosphate kinase; 22.9 1.9E+02 0.0042 31.8 6.4 76 183-259 346-425 (691)
459 COG0106 HisA Phosphoribosylfor 22.9 3.6E+02 0.0079 25.5 7.4 65 270-341 63-127 (241)
460 PRK06256 biotin synthase; Vali 22.6 7.3E+02 0.016 24.2 12.9 62 194-257 155-230 (336)
461 TIGR01503 MthylAspMut_E methyl 22.6 9E+02 0.02 25.3 12.0 106 194-304 50-159 (480)
462 TIGR03249 KdgD 5-dehydro-4-deo 22.4 7E+02 0.015 24.0 17.8 151 186-342 24-187 (296)
463 TIGR01334 modD putative molybd 22.2 5.1E+02 0.011 25.0 8.5 86 218-315 177-262 (277)
464 PRK11613 folP dihydropteroate 22.2 3E+02 0.0064 26.7 6.9 60 185-245 35-106 (282)
465 PRK07428 nicotinate-nucleotide 22.2 3.7E+02 0.0079 26.2 7.5 47 293-342 201-249 (288)
466 cd00740 MeTr MeTr subgroup of 22.1 3.4E+02 0.0074 25.7 7.2 61 185-246 23-87 (252)
467 COG0352 ThiE Thiamine monophos 22.0 6.4E+02 0.014 23.3 11.7 133 191-344 24-167 (211)
468 PF11590 DNAPolymera_Pol: DNA 21.7 98 0.0021 20.6 2.3 34 193-226 3-36 (41)
469 COG2200 Rtn c-di-GMP phosphodi 21.6 4.1E+02 0.0089 25.0 7.8 63 284-348 147-217 (256)
470 cd00957 Transaldolase_TalAB Tr 21.5 7.9E+02 0.017 24.2 12.5 104 229-339 90-218 (313)
471 PRK04169 geranylgeranylglycery 21.5 6.7E+02 0.015 23.5 8.9 71 240-315 137-212 (232)
472 PRK00208 thiG thiazole synthas 21.2 4.8E+02 0.01 24.9 7.8 152 186-348 22-187 (250)
473 TIGR00007 phosphoribosylformim 21.2 4.2E+02 0.0092 24.2 7.7 61 270-337 60-120 (230)
474 COG1748 LYS9 Saccharopine dehy 21.1 4.7E+02 0.01 26.7 8.3 58 300-361 84-141 (389)
475 PF10566 Glyco_hydro_97: Glyco 21.1 1E+02 0.0023 29.7 3.5 54 190-243 108-162 (273)
476 PF03659 Glyco_hydro_71: Glyco 21.0 5.2E+02 0.011 26.3 8.7 69 185-254 14-89 (386)
477 COG0667 Tas Predicted oxidored 21.0 2.4E+02 0.0051 27.7 6.1 64 284-348 146-211 (316)
478 smart00857 Resolvase Resolvase 20.9 2.6E+02 0.0057 23.3 5.8 43 300-342 56-101 (148)
479 cd00423 Pterin_binding Pterin 20.8 3.9E+02 0.0085 25.2 7.4 62 185-246 21-93 (258)
480 PRK15029 arginine decarboxylas 20.6 6.4E+02 0.014 28.2 9.8 135 185-344 201-349 (755)
481 PF00608 Adeno_shaft: Adenovir 20.5 71 0.0015 19.7 1.5 22 381-402 9-30 (30)
482 PRK12309 transaldolase/EF-hand 20.3 9.2E+02 0.02 24.5 12.0 104 230-340 97-225 (391)
483 cd07940 DRE_TIM_IPMS 2-isoprop 20.0 7.5E+02 0.016 23.4 18.1 176 186-368 18-219 (268)
No 1
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=9.5e-72 Score=559.28 Aligned_cols=358 Identities=25% Similarity=0.392 Sum_probs=321.2
Q ss_pred EeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHH-HHHHHHhCCCCC
Q 014886 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (416)
Q Consensus 48 I~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (416)
|++|+++++++|++.||+++.++.+.++.++|||+|++|++||||+.+. |.+++++...+...++ .++|.|+|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999875 4566666554444444 478999999999
Q ss_pred CHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHH-HcCC
Q 014886 125 ALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR-KQGF 202 (416)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~-~~G~ 202 (416)
+++.+++.+.....+. ..+++|||+||||++||.+|+|+|+||||. ++++++|++++..++++..++++++. ++||
T Consensus 81 ~~~~~~~~~~~~~~~~--~~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf 158 (368)
T TIGR02534 81 EIAAIMADLEKVVAGN--RFAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEEKRH 158 (368)
T ss_pred hHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHhcCc
Confidence 9999998887654443 347999999999999999999999999997 67899999888777776666666655 5899
Q ss_pred CEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 203 TTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 203 ~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
+.||+|+| .++++|+++|+++|+. +++++|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 ~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l~~- 235 (368)
T TIGR02534 159 RSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARLTR- 235 (368)
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHHHH-
Confidence 99999998 4789999999999997 7999999999999999999999999999987 59999999999999999875
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHc
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 359 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaa 359 (416)
++++||++||+++++.+++++++.+++|++|+|++|+| ++++++++++|+++|+++++||+++|+|+.++++|+++
T Consensus 236 ---~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h~~a 312 (368)
T TIGR02534 236 ---RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAHFFA 312 (368)
T ss_pred ---hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 360 GLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 360 a~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++..+ .|+++++.+.++++.+++.++||++.+|++||||+++|++.+++|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~~~~~ 367 (368)
T TIGR02534 313 TFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVNFYRR 367 (368)
T ss_pred hCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHHHhhc
Confidence 9998777 57777766667888888999999999999999999999999999975
No 2
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.4e-71 Score=554.15 Aligned_cols=356 Identities=26% Similarity=0.398 Sum_probs=321.9
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC--ccCcccHHHHHHHHH-HHHHHHhCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKAS-EACEVLKESPA 123 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (416)
||++|+++++++|++.||.++.++.+.++.++|||+|++|.+||||+.+.+ ++++++...+...++ .+.|.++|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 699999999999999999999999999999999999999999999998753 455565554444454 47899999999
Q ss_pred CCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC-
Q 014886 124 MALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG- 201 (416)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G- 201 (416)
.+++.+|+.+.+...++ ..+++||||||||++||.+|+|+|+||||+ ++++++|++++..+++++.+++++++++|
T Consensus 81 ~~~~~~~~~l~~~~~~~--~~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 158 (365)
T cd03318 81 TNIGAAMALLDRAVAGN--LFAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLEAGR 158 (365)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHhCCC
Confidence 99999999887654443 347999999999999999999999999997 67899999888778888888888999999
Q ss_pred CCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 202 FTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 202 ~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
|+.||+|+| .++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 159 f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~ 236 (365)
T cd03318 159 HRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGV--ELIEQPVPRENLDGLARLRS 236 (365)
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHHHHh
Confidence 999999999 4788999999999998 6799999999999999999999999999987 59999999999999999975
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++++.++++|++
T Consensus 237 ----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~hla 312 (365)
T cd03318 237 ----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASAHLF 312 (365)
T ss_pred ----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHh
Q 014886 359 AGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAW 410 (416)
Q Consensus 359 aa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~ 410 (416)
+++++..+ +|++++..+.++++.+++.++||++.+|++||||+++|++.+++
T Consensus 313 aa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~~ 365 (365)
T cd03318 313 ATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVRR 365 (365)
T ss_pred HhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhcC
Confidence 99998766 67777666667888788899999999999999999999999875
No 3
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.2e-68 Score=534.25 Aligned_cols=348 Identities=20% Similarity=0.269 Sum_probs=304.0
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++++|+++||.++.++.+.++.++|||+|++|++||||+.. +++++...+...++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 69999999999999999999999998889999999999999999999653 3344443333344568999999975 5
Q ss_pred HHHHHHHHHhhC--CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 126 LGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 126 ~~~~~~~l~~~~--~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
.+++++.+.+.. .+ .....+++||||||||++||.+|+|||+||||.++++++|.+++..+++++.+++++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~G 156 (355)
T cd03321 77 PAELERALAKRFRLLGYTGLVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEEG 156 (355)
T ss_pred hHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHhh
Confidence 666766665432 12 22246899999999999999999999999999988999999988888889999999999999
Q ss_pred CCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 202 FTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 202 ~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
|++||+|+| .+++.|+++|+++|+. ||++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 157 f~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~ 234 (355)
T cd03321 157 FHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIAS 234 (355)
T ss_pred hHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHHH
Confidence 999999998 4688999999999998 7999999999999999999999999999987 59999999999999999975
Q ss_pred hhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 280 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 280 ~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++. + .++|++
T Consensus 235 ----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~--~----~~~h~~ 304 (355)
T cd03321 235 ----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ--E----ISAHLL 304 (355)
T ss_pred ----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH--H----HHHHHH
Confidence 78999999999999999999999999999999999998 999999999999999999999852 2 468999
Q ss_pred ccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
+++++..++|+.. +..+++..++.++||++.+|++||||+++|++++++|+
T Consensus 305 aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~~ 355 (355)
T cd03321 305 AVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVRKYL 355 (355)
T ss_pred HhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHHhhC
Confidence 9999887776421 22344566789999999999999999999999999985
No 4
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.6e-68 Score=531.06 Aligned_cols=347 Identities=25% Similarity=0.401 Sum_probs=309.2
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCCCCCHH
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (416)
|+++++++|+++||+++.++.+.++.++|||+|++|++||||+.+. |++++++...+...+++ +.|.|+|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5789999999999999999999999999999999999999999864 56777776655555554 68999999999999
Q ss_pred HHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCH-HHHHHHHHHHHHcCCCEEE
Q 014886 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLK 206 (416)
Q Consensus 128 ~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~K 206 (416)
.+++.+.+ ..++ +.+++||||||||++||.+|+|+|+||||.++++++|.+++..++ +++.+++++++++||++||
T Consensus 81 ~~~~~~~~-~~~~--~~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~K 157 (354)
T cd03317 81 EVSERLAP-IKGN--NMAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIK 157 (354)
T ss_pred HHHHHHHH-hcCC--hHHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 99998876 3443 458999999999999999999999999998889999999887765 8899999999999999999
Q ss_pred EecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 207 LKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 207 iKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
+|++ ++.|+++|++||+..++++|++|+|++|+.++|. ++++|+++++ .|||||++++|++++++|++ +++
T Consensus 158 iKv~--~~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 228 (354)
T cd03317 158 LKIK--PGWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK----LLK 228 (354)
T ss_pred EecC--hHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----hcC
Confidence 9996 4689999999999855999999999999999985 7999999987 59999999999999999874 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~ 365 (416)
+||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++ ++++..
T Consensus 229 ~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~~~~ 307 (354)
T cd03317 229 TPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLPNFT 307 (354)
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCCCCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999996 566655
Q ss_pred ee-cCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHh
Q 014886 366 FI-DLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAW 410 (416)
Q Consensus 366 ~~-e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~ 410 (416)
+. +++... .+.+|++.+++.++||++.+|++||||+++|++.+++
T Consensus 308 ~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~~ 354 (354)
T cd03317 308 YPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALKK 354 (354)
T ss_pred CccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhcC
Confidence 43 443322 3456787778899999999999999999999999875
No 5
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.7e-68 Score=533.26 Aligned_cols=350 Identities=19% Similarity=0.228 Sum_probs=302.6
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCC-CC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-~~ 125 (416)
||++|+++++.+|++.||+++.++...++.++|||+|++|++||||++.. .+... .+.++++.++|.++ .+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~~~----~~~~~~~~llg~~~~~~ 72 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEALE----ALLEAARSLVGGDVFGA 72 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHHHH----HHHHHhHHHhCCCcchh
Confidence 69999999999999999999887777789999999999999999997531 12222 23457888888877 57
Q ss_pred HHHHHHHHHhhCC--CC-----------hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec--------
Q 014886 126 LGSVFGVVAGLLP--GH-----------QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-------- 183 (416)
Q Consensus 126 ~~~~~~~l~~~~~--g~-----------~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~-------- 183 (416)
.+.+|+.|.+... ++ ....+++||||||||++||.+|+|||+||||+ ++++++|+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~ 152 (395)
T cd03323 73 YLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKT 152 (395)
T ss_pred hHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeeccccccc
Confidence 7888988875431 11 13568999999999999999999999999996 77899998642
Q ss_pred -------------CCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 014886 184 -------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (416)
Q Consensus 184 -------------~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~ 248 (416)
..+++++.++++++++ +||++||+|+|. ++++|+++|+++|++.+++.|++|+|++|++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 153 DLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 2477888899988885 699999999984 6789999999999987799999999999999999999
Q ss_pred HHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHH
Q 014886 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 327 (416)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~ 327 (416)
+++|++ ++ .|||||++ |++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++
T Consensus 233 ~~~l~~-~l--~~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELEG-VL--AYLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcCc-CC--CEEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 999999 87 49999998 8999999875 78999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCce-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChh
Q 014886 328 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 406 (416)
Q Consensus 328 i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~ 406 (416)
++++|+++|+++++|++.+++++.++++|++++++|+.+ +|...++...++++.+++.++||++.+|++||||+++|++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~ 383 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRD 383 (395)
T ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHH
Confidence 999999999999999998999999999999999998765 3432232223445567788999999999999999999999
Q ss_pred hHHhhhc
Q 014886 407 NIAWGLQ 413 (416)
Q Consensus 407 ~l~~~~~ 413 (416)
.+++|.+
T Consensus 384 ~l~~~~~ 390 (395)
T cd03323 384 KLAKAHE 390 (395)
T ss_pred HHHHHHH
Confidence 9999964
No 6
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=5.2e-68 Score=528.42 Aligned_cols=339 Identities=22% Similarity=0.308 Sum_probs=294.3
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (416)
||++|+++.+++|++.||..+..++..++.++|||+| +|++||||+.. .++....+ .+.+.|.|+|+|+.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~~-----~~~~~~~i--~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTYA-----DAAAAALV--DGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCCC-----hHHHHHHH--HHHHHHHhcCCCcccH
Confidence 7999999999999999997666556678899999997 79999998632 23222222 1347899999999999
Q ss_pred HHHHHHHHhhC---C-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CCHHHHHHHHHHHHHc
Q 014886 127 GSVFGVVAGLL---P-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQ 200 (416)
Q Consensus 127 ~~~~~~l~~~~---~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~ 200 (416)
+.+|+.|.+.. . +.....|++||||||||++||.+|+|||+||||.++++++|++++. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 99999997642 1 1222368999999999999999999999999998889999988653 3678899999999999
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 201 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 201 G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
||++||+|+|.++++|+++|+++|++ |+++.|++|+|++|++++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 99999999998889999999999997 7899999999999999999999999999987 59999999999999999975
Q ss_pred hhhcc--CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHH
Q 014886 280 IAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 280 ~~r~~--~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~h 356 (416)
+ +++||++||++++.++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7899999999999999999999999999999999998 99999999999999999999984 358899
Q ss_pred HHccCCCCceecCcCCc-ccccCCCCcceeEeCcEEEcCC-CCCcccccCh
Q 014886 357 LSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHW 405 (416)
Q Consensus 357 laaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~-~PGlGield~ 405 (416)
+++++||+.+.|+..+. .+.++++.+++.++||++.+|+ +||||+++|+
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~ 351 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRA 351 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCC
Confidence 99999998777754322 2334566677888999999987 7999999997
No 7
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=1e-66 Score=527.88 Aligned_cols=343 Identities=18% Similarity=0.201 Sum_probs=293.6
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (416)
|||++|+++.+ . ..++.++|||+|++|++||||+... +++. .....+ +.++|.|+|+++.
T Consensus 1 mkI~~v~~~~~-~-------------~~~~~vlVri~td~G~~G~GE~~~~----~~~~-~~~~~~~~~l~p~l~G~d~~ 61 (404)
T PRK15072 1 MKIVDAEVIVT-C-------------PGRNFVTLKITTDDGVTGLGDATLN----GREL-AVASYLQDHVCPLLIGRDAH 61 (404)
T ss_pred CeeEEEEEEEE-C-------------CCCcEEEEEEEeCCCCeEEEecccC----CchH-HHHHHHHHHHHHHcCCCChh
Confidence 89999999754 1 1135689999999999999998532 1221 122223 3588999999999
Q ss_pred CHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHc
Q 014886 125 ALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 200 (416)
Q Consensus 125 ~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (416)
+++.+|+.+.+.. ++.....+++||||||||++||.+|+|||+||||+ ++++++|.+....+++++.+++++++++
T Consensus 62 ~~e~~~~~l~~~~~~~~~~~~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~~~ 141 (404)
T PRK15072 62 RIEDIWQYLYRGAYWRRGPVTMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHLEL 141 (404)
T ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999996631 23233458999999999999999999999999996 6789999765555788888999999999
Q ss_pred CCCEEEEecCC-C----------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHH
Q 014886 201 GFTTLKLKVGK-N----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQE 244 (416)
Q Consensus 201 G~~~~KiKvG~-~----------------------------------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~ 244 (416)
||++||+|+|. + ++.|+++|++||+. |+++.|++|+|++|++++
T Consensus 142 Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~~~ 221 (404)
T PRK15072 142 GYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTPIE 221 (404)
T ss_pred CCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCHHH
Confidence 99999999972 1 14457899999997 799999999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
|++++++|+++++ .|||||++++|++++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++
T Consensus 222 A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit 295 (404)
T PRK15072 222 AARLGKSLEPYRL--FWLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT 295 (404)
T ss_pred HHHHHHhccccCC--cEEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH
Confidence 9999999999987 59999999999999999975 78999999999999999999999999999999999997 99
Q ss_pred HHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccc
Q 014886 324 GALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGie 402 (416)
++++++++|+++|+++++|++. +|+++.++++|+++++|++.++|+..+..+..+++..++.++||++.+|++||||++
T Consensus 296 ~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLGi~ 375 (404)
T PRK15072 296 HLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLGVD 375 (404)
T ss_pred HHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCCee
Confidence 9999999999999999999875 699999999999999999887777654333456777788999999999999999999
Q ss_pred cChhhHHhhhc
Q 014886 403 LHWDNIAWGLQ 413 (416)
Q Consensus 403 ld~~~l~~~~~ 413 (416)
+|++++++|..
T Consensus 376 ~d~~~l~~~~~ 386 (404)
T PRK15072 376 FDEKLAAKYPY 386 (404)
T ss_pred ECHHHHhhCCC
Confidence 99999999853
No 8
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=2.6e-66 Score=519.83 Aligned_cols=345 Identities=19% Similarity=0.265 Sum_probs=297.7
Q ss_pred EEeEEEEEEEEeccccceee----cCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTI----ATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~----a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
||++|+++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. . .. .....+.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~---~~--~~~~~~~l~p~liG~d 73 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V---TD--PALVDRFLKKVLIGQD 73 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h---hH--HHHHHHHHHHhcCCCC
Confidence 69999999999999998766 577888899999999999999999996431 1 11 1112245789999999
Q ss_pred CCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC-------CCHHHHHHHHH
Q 014886 123 AMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAELAS 195 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~-------~~~~~~~~~~~ 195 (416)
+.+++.+|+.|.+...+.. ..|++||||||||++||.+|+|||+||||.+++|++|++++. .+++++.+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~-~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~~a~ 152 (368)
T cd03329 74 PLDRERLWQDLWRLQRGLT-DRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYADFAE 152 (368)
T ss_pred hhHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHHHHH
Confidence 9999999999987655532 358999999999999999999999999998889999987632 37889999999
Q ss_pred HHHHcCCCEEEEecCCC--hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHH
Q 014886 196 KYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (416)
Q Consensus 196 ~~~~~G~~~~KiKvG~~--~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (416)
+++++||++||+|++.+ +++|+++|++||++ |+++.|++|+|++|+.++|+++++.|+++++ .|+|||++++|++
T Consensus 153 ~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~ 230 (368)
T cd03329 153 ECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGF--FWYEDPLREASIS 230 (368)
T ss_pred HHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCC--CeEeCCCCchhHH
Confidence 99999999999998743 68999999999997 8999999999999999999999999999987 4999999999999
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~-~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
++++|++ ++++||++||++++ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 231 ~~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~------ 300 (368)
T cd03329 231 SYRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN------ 300 (368)
T ss_pred HHHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh------
Confidence 9999874 78999999999999 999999999999999999999997 99999999999999999999985
Q ss_pred HHHHHHHHccCCCCceecC--cCCcccccC-----CCCcceeEeCcEEEcCCCCCcccccChhhHHhh
Q 014886 351 MGFAGHLSAGLGCFKFIDL--DTPLLLSED-----PVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWG 411 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~--~~p~~~~~d-----~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~ 411 (416)
.++++|++++++|..+.|. ..|.....+ ...+++.++||++.+|++|||||++|++++++|
T Consensus 301 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~~~ 368 (368)
T cd03329 301 GAANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIERN 368 (368)
T ss_pred HHHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHhhC
Confidence 4688999999999888773 333321111 112345568999999999999999999999876
No 9
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=3.8e-66 Score=520.83 Aligned_cols=340 Identities=19% Similarity=0.239 Sum_probs=289.7
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
|||++|+++++. + ..++|||+|++|++||||+...+ +.+. ....++.+.|.|+|+++.+
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~~---~~~~~~~~~p~l~G~d~~~ 59 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RART---VEAAVHELADYLIGKDPRR 59 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chHH---HHHHHHHHHHHhCCCCHHH
Confidence 799999998762 1 13899999999999999986321 1222 2223356899999999999
Q ss_pred HHHHHHHHHhh--CCCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 126 LGSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 126 ~~~~~~~l~~~--~~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
++.+|+.+... .++. ....|++|||||||||+||.+|+|||+||||+ ++++++|.+++..+++++.+++++++++|
T Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~~G 139 (382)
T PRK14017 60 IEDHWQVMYRGGFYRGGPILMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVERG 139 (382)
T ss_pred HHHHHHHHHHhcccCCchHHhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998652 2232 23458999999999999999999999999996 67899998877778999999999999999
Q ss_pred CCEEEEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 202 FTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 202 ~~~~KiKvG~---------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
|++||+|+|. ++++|+++|+++|+. ||+++|++|+|++|+.++|+++++.|+++++ .|||||++++|+
T Consensus 140 f~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~ 217 (382)
T PRK14017 140 FTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRP--MFIEEPVLPENA 217 (382)
T ss_pred CCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCC--CeEECCCCcCCH
Confidence 9999999963 357899999999998 7999999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++|||+++.+++.++++.+++|++|+|++|+| ++++++++++|+++|+++++|++.+ +++
T Consensus 218 ~~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~i~ 292 (382)
T PRK14017 218 EALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-PIA 292 (382)
T ss_pred HHHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-HHH
Confidence 99999975 78999999999999999999999999999999999998 9999999999999999999999865 899
Q ss_pred HHHHHHHHccCCCCceecCc--CCccccc---CCCC--cceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 351 MGFAGHLSAGLGCFKFIDLD--TPLLLSE---DPVL--DGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~--~p~~~~~---d~~~--~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
+++++|++++++++.+.|.. ..+.... +.+. .++.++||++.+|++|||||++|+++|++|..
T Consensus 293 ~aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l~~~~~ 362 (382)
T PRK14017 293 LAACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKVRERAK 362 (382)
T ss_pred HHHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHHHHhhh
Confidence 99999999999887654421 1111111 1122 46788999999999999999999999999865
No 10
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=2.2e-65 Score=513.49 Aligned_cols=344 Identities=20% Similarity=0.258 Sum_probs=288.9
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECC---C--ceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN---G--CVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~---G--~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
++++.+++|+++||.++.++++.++.++|||+||+ | ++||||+.. + +...... ..+.+.|.|+|+||.+
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-~----~~~~~~~-i~~~~~p~LiG~dp~~ 76 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-G----RYAQGGL-LRERFIPRLLAAAPDS 76 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-C----chhHHHH-HHHHHHHHhcCCChHH
Confidence 56778889999999999999999999999999999 9 999999862 1 1111111 1234789999999984
Q ss_pred ----------HHHHHHHHHhhC--CCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CceeeeeEeec---
Q 014886 126 ----------LGSVFGVVAGLL--PGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIP--- 183 (416)
Q Consensus 126 ----------~~~~~~~l~~~~--~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~------~~~v~~~~~~~--- 183 (416)
++.+|+.|.... .++ ....|+|||||||||++||.+|+|||+||||+ ++++++|++.+
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~~~~ 156 (385)
T cd03326 77 LLDDAGGNLDPARAWAAMMRNEKPGGHGERAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGGYYY 156 (385)
T ss_pred hhhcccccCCHHHHHHHHHhcCccCCCCHHHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecCCCC
Confidence 499999996531 222 22458999999999999999999999999985 35899998754
Q ss_pred -CCCHHHHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 184 -IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 184 -~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
..+++++.+++++++++||++||+|+|. ++++|+++|+++|+. ||++.|++|+|++||.++|+++++.|+++++ .
T Consensus 157 ~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~--~ 234 (385)
T cd03326 157 PGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL--R 234 (385)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC--C
Confidence 3467888899999999999999999984 788999999999997 8999999999999999999999999999987 5
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC----CEEEeCCCCCc-hHHHHHHHHHHHHc
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA----DVINIKLAKVG-VLGALEIIEVVRAS 335 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~----d~v~~k~~k~G-i~~~l~i~~~A~~~ 335 (416)
|||||++++|++++++|++ ++++||++||+++++.+++++++.+++ |++|+|++|+| ++++++++++|+++
T Consensus 235 ~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~ 310 (385)
T cd03326 235 WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAH 310 (385)
T ss_pred EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHc
Confidence 9999999999999999975 789999999999999999999999987 99999999997 99999999999999
Q ss_pred CCc---EEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhh
Q 014886 336 GLN---LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 336 gi~---~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~ 412 (416)
|++ +++|+ +..+++|+++++++ .++|.........+.+.+++.++||++.+|++||||+|+|++++++|.
T Consensus 311 gi~~~~~~pH~------~~~a~lhl~aa~~~-~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGield~~~~~~~~ 383 (385)
T cd03326 311 GWSRRRFFPHG------GHLMSLHIAAGLGL-GGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELAAEMR 383 (385)
T ss_pred CCCCceeecch------HHHHHHHHHhcCCC-ceeEEeccccchhhhcCCCCceeCCEEECCCCCCCCcccCHHHHHHHh
Confidence 998 77765 35688999998885 233321111101123346678899999999999999999999999987
Q ss_pred c
Q 014886 413 Q 413 (416)
Q Consensus 413 ~ 413 (416)
+
T Consensus 384 ~ 384 (385)
T cd03326 384 E 384 (385)
T ss_pred c
Confidence 4
No 11
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=9e-65 Score=507.27 Aligned_cols=340 Identities=26% Similarity=0.379 Sum_probs=301.5
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (416)
||++|+++++++|++.| .++.+.++.++|||+|++|++||||+.+.+. .+. ....+++ ++|.|+|+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~~---~~~~l~~~~~p~l~G~~~~~ 71 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PSA---VAAAIEDLLAPLLIGRDPLD 71 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--chH---HHHHHHHHHHHHccCCChHH
Confidence 69999999999999998 5566778999999999999999999987542 222 2333454 899999999999
Q ss_pred HHHHHHHHHhhCCCC----hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCC--CHHHHHHHHHHHH
Q 014886 126 LGSVFGVVAGLLPGH----QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIV--SPAEAAELASKYR 198 (416)
Q Consensus 126 ~~~~~~~l~~~~~g~----~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~--~~~~~~~~~~~~~ 198 (416)
++.+|+.+.+...++ ....+++||||||||++||.+|+|+|+||||. ++++++|.+++.. +++++.+.+++++
T Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~ 151 (357)
T cd03316 72 IERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAV 151 (357)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHH
Confidence 999999997654322 23568999999999999999999999999998 7899999887655 6888999999999
Q ss_pred HcCCCEEEEecCCC------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 199 KQGFTTLKLKVGKN------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 199 ~~G~~~~KiKvG~~------~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
++||+.||||+|.+ +++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++++
T Consensus 152 ~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~ 229 (357)
T cd03316 152 AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDL 229 (357)
T ss_pred HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCH
Confidence 99999999999954 68999999999997 7899999999999999999999999999987 599999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++||++++++++.++++.+++|++|+|++|+| ++++++++++|+++|+++++|++.+ +|+
T Consensus 230 ~~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 230 EGLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 99999875 68999999999999999999999999999999999998 9999999999999999999999966 999
Q ss_pred HHHHHHHHccCCCCceecCcCCc-ccccCCCCcceeEeCcEEEcCCCCCcccc
Q 014886 351 MGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~PGlGie 402 (416)
.++++|++++++++.++|++.+. .+..+++.+++.++||++.+|++||||+|
T Consensus 305 ~aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 305 LAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 99999999999998888876543 23345667788999999999999999986
No 12
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=9.2e-65 Score=506.96 Aligned_cols=335 Identities=17% Similarity=0.185 Sum_probs=287.0
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHH-HHHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~ 125 (416)
||++|+++.. .| . ++.++|||+|++|++||||+.+.. +.+. ....++ .+.|.|+|+++.+
T Consensus 1 kI~~ie~~~~-~~----~---------~~~vlV~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~l~G~d~~~ 61 (361)
T cd03322 1 KITAIEVIVT-CP----G---------RNFVTLKITTDQGVTGLGDATLNG--RELA---VKAYLREHLKPLLIGRDANR 61 (361)
T ss_pred CeEEEEEEEE-CC----C---------CCEEEEEEEeCCCCeEEEecccCC--CHHH---HHHHHHHHHHHHcCCCChhH
Confidence 7999999654 22 1 246899999999999999985321 1222 222333 4789999999999
Q ss_pred HHHHHHHHHhh--CC-CChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcC
Q 014886 126 LGSVFGVVAGL--LP-GHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQG 201 (416)
Q Consensus 126 ~~~~~~~l~~~--~~-g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G 201 (416)
++.+|+.|... +. +.....+++||||||||++||.+|+|||+||||+ ++++++|.+.+..+++++.+++++++++|
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~~G 141 (361)
T cd03322 62 IEDIWQYLYRGAYWRRGPVTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLAQG 141 (361)
T ss_pred HHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 99999998653 12 2222458999999999999999999999999996 67899997766667888889999999999
Q ss_pred CCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHh
Q 014886 202 FTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 280 (416)
Q Consensus 202 ~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~ 280 (416)
|++||+|+ +++|+++|+. |+++.|++|+|++||+++|+++++.|+++++ .|||||++++|++++++|++
T Consensus 142 f~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~- 211 (361)
T cd03322 142 YRAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRL--FWMEDPTPAENQEAFRLIRQ- 211 (361)
T ss_pred CCeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCC--CEEECCCCcccHHHHHHHHh-
Confidence 99999998 8899999997 7899999999999999999999999999987 49999999999999999975
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHH
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLS 358 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hla 358 (416)
++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++++.++++|++
T Consensus 212 ---~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~la 288 (361)
T cd03322 212 ---HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALHLD 288 (361)
T ss_pred ---cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHHHH
Confidence 78999999999999999999999999999999999998 999999999999999999999987 5999999999999
Q ss_pred ccCCCCceecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhc
Q 014886 359 AGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQ 413 (416)
Q Consensus 359 aa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~ 413 (416)
++++++.+.|+........+++.+++.++||++.+|++||||+++|++++++|..
T Consensus 289 a~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~~~~~ 343 (361)
T cd03322 289 LWVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAAKFPY 343 (361)
T ss_pred hhcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHhhCCC
Confidence 9998876666432111224666778899999999999999999999999999953
No 13
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.3e-64 Score=501.52 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=282.5
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (416)
||++|+++.+. ++.++|||+|++|++||||+.+.. +.+.. ...++.+.|.|+|+++.++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~~---~~~~~~l~p~l~G~d~~~~ 59 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KARTV---EAAVQELEDYLIGKDPMNI 59 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cchHH---HHHHHHHHHHhCCCCHHHH
Confidence 68899987652 146899999999999999997521 12222 2234558999999999999
Q ss_pred HHHHHHHHhh--CCCC-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCC
Q 014886 127 GSVFGVVAGL--LPGH-QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGF 202 (416)
Q Consensus 127 ~~~~~~l~~~--~~g~-~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~ 202 (416)
+.+++.+... ..++ ....+++||||||||++||.+|+|+|+||||+ ++++++|.+++..+++++.+++++++++||
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf 139 (352)
T cd03325 60 EHHWQVMYRGGFYRGGPVLMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREAGF 139 (352)
T ss_pred HHHHHHHHHhcCcCCcchhhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 9999998542 2232 23468999999999999999999999999995 678999988877788888899999999999
Q ss_pred CEEEEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHH
Q 014886 203 TTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 272 (416)
Q Consensus 203 ~~~KiKvG~---------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~ 272 (416)
++||+|+|. ++++|+++|+++|+. +|++.||+|+|++|++++|+++++.|+++++ .|||||++++|++
T Consensus 140 ~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~ 217 (352)
T cd03325 140 TAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRL--LFIEEPVLPENVE 217 (352)
T ss_pred CEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCC--cEEECCCCccCHH
Confidence 999999983 467899999999997 7999999999999999999999999999987 4999999999999
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++++.
T Consensus 218 ~~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i~~ 292 (352)
T cd03325 218 ALAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPIAL 292 (352)
T ss_pred HHHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChHHH
Confidence 9999975 78999999999999999999999999999999999997 99999999999999999999997 899999
Q ss_pred HHHHHHHccCCCCceecCc--CCccccc----CCCC-cceeEeCcEEEcCCCCCcccccC
Q 014886 352 GFAGHLSAGLGCFKFIDLD--TPLLLSE----DPVL-DGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 352 ~a~~hlaaa~~~~~~~e~~--~p~~~~~----d~~~-~~~~~~~G~~~~p~~PGlGield 404 (416)
++++|++++++++.+.|+. .+....+ +++. .++.++||++.+|++||||+++|
T Consensus 293 ~a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 293 AASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 9999999999887655432 2211111 1333 57889999999999999999987
No 14
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=1.8e-63 Score=494.23 Aligned_cols=319 Identities=19% Similarity=0.279 Sum_probs=272.9
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH-HHHHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~ 125 (416)
||++|+++. ..++|||+|++|++||||+.+. . .. ...+ +.+.|.|+|++|.+
T Consensus 1 kI~~i~~~~-------------------~~v~V~i~td~Gi~G~GE~~~~----~-~~---~~~i~~~l~p~liG~dp~~ 53 (341)
T cd03327 1 KIKSVRTRV-------------------GWLFVEIETDDGTVGYANTTGG----P-VA---CWIVDQHLARFLIGKDPSD 53 (341)
T ss_pred CeEEEEEEE-------------------EEEEEEEEECCCCeEEecCCCc----h-HH---HHHHHHHHHHHhCCCCchH
Confidence 789999853 2589999999999999998431 1 11 1223 34889999999999
Q ss_pred HHHHHHHHHhhC--CC--ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeec-CCCHHHHHHHHHHHHH
Q 014886 126 LGSVFGVVAGLL--PG--HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-IVSPAEAAELASKYRK 199 (416)
Q Consensus 126 ~~~~~~~l~~~~--~g--~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 199 (416)
++.+|+.|.+.. .+ .....+++||||||||++||.+|+|||+||||+ ++++++|++.. ..+++++.++++++++
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~a~said~AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~~ 133 (341)
T cd03327 54 IEKLWDQMYRATLAYGRKGIAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYLK 133 (341)
T ss_pred HHHHHHHHHhhccccCCccHHHhHHHHHHHHHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999996632 12 222358999999999999999999999999996 66899998753 4678889999999999
Q ss_pred cCCCEEEEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 200 QGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 200 ~G~~~~KiKvG~-------~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
+||++||+|+|. ++++|+++|++||+. ||++.|++|+|++|++++|++++++|+++++ .|||||++++|+
T Consensus 134 ~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~ 211 (341)
T cd03327 134 EGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYEL--RWIEEPLIPDDI 211 (341)
T ss_pred cCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCC--ccccCCCCccCH
Confidence 999999999973 357999999999997 8999999999999999999999999999987 599999999999
Q ss_pred HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 272 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+++++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+.
T Consensus 212 ~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~------ 281 (341)
T cd03327 212 EGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS------ 281 (341)
T ss_pred HHHHHHHh----cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH------
Confidence 99999975 78999999999999999999999999999999999997 99999999999999999999973
Q ss_pred HHHHHHHHccCCCCceecCcC--Ccc----cccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 351 MGFAGHLSAGLGCFKFIDLDT--PLL----LSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 351 ~~a~~hlaaa~~~~~~~e~~~--p~~----~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
.++++|++++++|+.+.|+.. +.. +..+++.+++.++||++.+|++||||+|+|
T Consensus 282 ~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 282 QIYNYHFIMSEPNSPFAEYLPNSPDEVGNPLFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred HHHHHHHHHhCcCceeEEecccccccccchhHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 458899999999987777532 110 124556667788999999999999999987
No 15
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=2.4e-63 Score=499.33 Aligned_cols=355 Identities=28% Similarity=0.392 Sum_probs=302.1
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccC-cccHHHHHHHHHHHHHHHhCCCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AEDQQTAMVKASEACEVLKESPAM 124 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~-~e~~~~~~~~~~~~~~~l~g~~~~ 124 (416)
|+|.+|+.+++.+|+..||..+.++.+.+..++|+|+|++|++||||+.+..... .+. ... ..+.+.++|+++.
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~~~~---~~~--~~~~~~l~g~d~~ 75 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEE---AEA--VLLAPLLIGRDPF 75 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccchhh---hhH--HHHHHHhcCCCHH
Confidence 5788999999999999999999888888999999999999999999999853221 111 111 1468899999999
Q ss_pred CHHHHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-ceeeeeEeecC-C-CHHHHHHHHHHHH
Q 014886 125 ALGSVFGVVAGLL---PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPI-V-SPAEAAELASKYR 198 (416)
Q Consensus 125 ~~~~~~~~l~~~~---~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~~v~~~~~~~~-~-~~~~~~~~~~~~~ 198 (416)
+++.+|+.+.... .++...++++|||+||||++||.+|+|||+||||.. +.+++|.+... . +++...+.++.+.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~ 155 (372)
T COG4948 76 DIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALV 155 (372)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999987642 122234689999999999999999999999999986 47888877764 2 4555566666667
Q ss_pred HcCCCEEEEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHH
Q 014886 199 KQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276 (416)
Q Consensus 199 ~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (416)
++||+.+|+|+| .+.+.|+++|+++|++ +++++|++|+|++||+++|++++++|+++++ .|||||++++|++++++
T Consensus 156 ~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~ 233 (372)
T COG4948 156 ELGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRE 233 (372)
T ss_pred hcCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHH
Confidence 799999999999 4456999999999998 6699999999999999999999999999986 59999999999999999
Q ss_pred hHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 014886 277 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (416)
Q Consensus 277 l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~ 355 (416)
|++ .+.+||++||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++.++++
T Consensus 234 l~~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~ 307 (372)
T COG4948 234 LRA----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAAL 307 (372)
T ss_pred HHh----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHH
Confidence 975 55699999999999999999999999999999999998 9999999999998888877776 5999999999
Q ss_pred HHHccCCCCceecCcCCcccc-----cCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 356 HLSAGLGCFKFIDLDTPLLLS-----EDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 356 hlaaa~~~~~~~e~~~p~~~~-----~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
|++++.+++ .+++++..+. .+++.+++..+||++.+|++||||+++|++.+++|....
T Consensus 308 hla~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~~~~~~~~ 370 (372)
T COG4948 308 HLAAALPNF--GDLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDALAKYRVRY 370 (372)
T ss_pred HHhhccchh--hhccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHHHhccccc
Confidence 999988654 3444444332 236777778899999999999999999999999998654
No 16
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.4e-63 Score=501.35 Aligned_cols=342 Identities=20% Similarity=0.244 Sum_probs=276.9
Q ss_pred EEEeEEEEEEEEeccccceeecCc--eeeeeeEEEEEEEECC-CceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCC
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~--~~~~~~~~iV~v~t~~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (416)
+||++|+++.+++|+++|+..+.. +....+.++|||+||+ |++||||+..... +.+. ....++.++|.|+|++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~~-~~~~---~~~~~~~lap~liG~d 76 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIGR-GNEI---VCAAIEALAHLVVGRD 76 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCCC-chHH---HHHHHHHHHHHhCCCC
Confidence 589999999999999999855433 3344578999999999 9999999864321 1122 2222355899999999
Q ss_pred CCCHHHHHHHHHhhCC--------C---ChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-C-----------------
Q 014886 123 AMALGSVFGVVAGLLP--------G---HQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-S----------------- 173 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~~--------g---~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~----------------- 173 (416)
+.+++.+++.+++.+. + .....|++||||||||++||.+|+|||+||||. +
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~ 156 (415)
T cd03324 77 LESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALT 156 (415)
T ss_pred HHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccC
Confidence 9988544444433221 1 111358999999999999999999999999994 2
Q ss_pred ------------------------ceeeeeEee-c--CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh
Q 014886 174 ------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226 (416)
Q Consensus 174 ------------------------~~v~~~~~~-~--~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~ 226 (416)
+++++|.+. + ..+++++.+++++++++||++||+|+|.++++|+++|+++|+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~ 236 (415)
T cd03324 157 PEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV 236 (415)
T ss_pred HHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 467788642 2 3477889999999999999999999998899999999999997
Q ss_pred -CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC---CCeEEeCCCCCCHHHHH
Q 014886 227 -HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAADESCRSLDDVK 302 (416)
Q Consensus 227 -g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~---~iPIa~dEs~~~~~d~~ 302 (416)
||++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|++ ++ ++||++||++++.++++
T Consensus 237 vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l--~~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~ 310 (415)
T cd03324 237 IGPDNKLMIDANQRWDVPEAIEWVKQLAEFKP--WWIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFK 310 (415)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhccCC--CEEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHH
Confidence 8999999999999999999999999999987 59999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC---------CCCceecCcCC
Q 014886 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL---------GCFKFIDLDTP 372 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~---------~~~~~~e~~~p 372 (416)
++++.+++|++|+|++|+| ++++++++++|+++|+++++|+ ++++.++++|.++.+ ++. ++|+..
T Consensus 311 ~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~-~~e~~~- 385 (415)
T cd03324 311 QLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGR-VIEYVD- 385 (415)
T ss_pred HHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccc-hhhhHH-
Confidence 9999999999999999998 9999999999999999999996 567766666544321 121 233211
Q ss_pred cccccCCCCcceeEeCcEEEcCCCCCcccccC
Q 014886 373 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 404 (416)
Q Consensus 373 ~~~~~d~~~~~~~~~~G~~~~p~~PGlGield 404 (416)
+..+++.+++.++||++.+|++||||+|+.
T Consensus 386 --~~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 386 --HLHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred --HHHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 113445677899999999999999999973
No 17
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=1.1e-62 Score=500.40 Aligned_cols=349 Identities=18% Similarity=0.227 Sum_probs=286.5
Q ss_pred EEeEEEEEEEEeccccceeecCc-eeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATS-RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~-~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (416)
-|+.+++.++..- ..++-...| .-+..+.++|+|+|++|++||||+.+ .+... ..++.++|.|+|+++.+
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~---~~l~~lap~LiG~dp~~ 75 (441)
T TIGR03247 5 VVTEMRVIPVAGH-DSMLLNLSGAHAPFFTRNIVILTDSSGNTGVGEVPG-----GEKIR---ATLEDARPLVVGKPLGE 75 (441)
T ss_pred EEeEEEEEeeccc-cchhccccccCCCcceEEEEEEEECCCCeEEEeCCC-----cHHHH---HHHHHHHHHhcCCCHHH
Confidence 4677777666322 122222221 12256899999999999999999853 23222 22356899999999999
Q ss_pred HHHHHHHHHhhCC-------CCh------hhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CceeeeeEe---ec----
Q 014886 126 LGSVFGVVAGLLP-------GHQ------FASVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDIT---IP---- 183 (416)
Q Consensus 126 ~~~~~~~l~~~~~-------g~~------~~~a~said~ALwDl~gk~~g~pl~~LLG-g~-~~~v~~~~~---~~---- 183 (416)
++.+|+.|..... +.. ...|+|||||||||++||.+|+|||+||| |. ++++++|.+ ++
T Consensus 76 ~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~~~~ 155 (441)
T TIGR03247 76 YQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGDRKR 155 (441)
T ss_pred HHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeecccccc
Confidence 9999999966431 211 23689999999999999999999999999 64 678998854 11
Q ss_pred ----------------------CCCHHHHHHHHHHHHH-cCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCC
Q 014886 184 ----------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEG 239 (416)
Q Consensus 184 ----------------------~~~~~~~~~~~~~~~~-~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~ 239 (416)
..+++++.++++++++ +||++||+|+|. +.++|+++|+++|++++++.|++|+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDAN~~ 235 (441)
T TIGR03247 156 TSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDPNGA 235 (441)
T ss_pred ccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 1367888888888776 599999999995 5689999999999988899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCC----HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
|+.++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||+++++.+++++++.+++|++|+
T Consensus 236 wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 236 WSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred CCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999999999999998 6 49999999998 899999874 78999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcCCcccc--cCCCCcceeEeCcEEEc
Q 014886 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 316 k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G~~~~ 393 (416)
|+.++|++++++++++|+++|+++++|++.+++++.++++|+++++++.. .+++.++.+. ++++++++.++||++.+
T Consensus 309 d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~i~v 387 (441)
T TIGR03247 309 DPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGKIQV 387 (441)
T ss_pred cCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCEEec
Confidence 99766799999999999999999999998889999999999999988632 3444443222 35667778899999999
Q ss_pred CCCCCcccccChhhHHhhh
Q 014886 394 TNARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 394 p~~PGlGield~~~l~~~~ 412 (416)
|++|||||++|++++++|.
T Consensus 388 p~~PGLGve~d~~~l~~~~ 406 (441)
T TIGR03247 388 PDKPGLGVEIDMDAVDAAH 406 (441)
T ss_pred CCCCCCCceeCHHHHHHHH
Confidence 9999999999999999983
No 18
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=1.4e-60 Score=470.25 Aligned_cols=317 Identities=23% Similarity=0.317 Sum_probs=277.9
Q ss_pred EEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--CccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHH
Q 014886 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVF 130 (416)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~ 130 (416)
|++++|+++||.++.++++.++.++|||+|++|++||||+.+. |.+++++...+...+.+ +.|.++| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 4688999999999999999999999999999999999999864 55667766654444544 5889999 999999999
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 014886 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (416)
Q Consensus 131 ~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG 210 (416)
+.+... .++ +.+++||||||||++||..|+|+|+||||.++++++|.+++..+++++.+++++++++||+.||+|++
T Consensus 80 ~~~~~~-~~~--~~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~ 156 (324)
T TIGR01928 80 ELVRSL-KGT--PMAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT 156 (324)
T ss_pred HHHHHc-cCC--cHHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 988653 443 35799999999999999999999999999888999999988889999999999999999999999996
Q ss_pred CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 211 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 211 ~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
. +.|+++++++|+.+|+++|++|+|++|+.+++ +++++|+++++ .|||||++++|++++++|++ ++++||+
T Consensus 157 ~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~pia 227 (324)
T TIGR01928 157 P--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTITPIC 227 (324)
T ss_pred C--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCCCEe
Confidence 3 67999999999988899999999999999986 56899999987 59999999999999999975 7899999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecC
Q 014886 291 ADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDL 369 (416)
Q Consensus 291 ~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~ 369 (416)
+||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++|+.++++|+|++.++....|.
T Consensus 228 ~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~~~~ 307 (324)
T TIGR01928 228 LDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYPGDV 307 (324)
T ss_pred eCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCCCCC
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999887765433343
Q ss_pred c-CCcccccCCCCcc
Q 014886 370 D-TPLLLSEDPVLDG 383 (416)
Q Consensus 370 ~-~p~~~~~d~~~~~ 383 (416)
. +..++..|+..++
T Consensus 308 ~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 308 SPSGYYFDQDIVAPS 322 (324)
T ss_pred CCccccccccccCCC
Confidence 3 3234455555443
No 19
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=2.1e-60 Score=478.03 Aligned_cols=315 Identities=17% Similarity=0.232 Sum_probs=258.7
Q ss_pred eeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhC--CCC--hhhHHHH
Q 014886 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLL--PGH--QFASVRA 147 (416)
Q Consensus 72 ~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~--~~~~a~s 147 (416)
+.++.++|||+|++|++||||+.. ++.. .....+.+.|.|+|+++.+++.+|++|.+.. .++ ....|++
T Consensus 54 ~~~~~vlVrI~td~G~~G~Ge~~~-----~~~~--~~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g~~~~A~s 126 (394)
T PRK15440 54 NVLGTLVVEVEAENGQVGFAVSTA-----GEMG--AFIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKGLVMNTIS 126 (394)
T ss_pred eccceEEEEEEECCCCEEEEeCCC-----cHHH--HHHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCccHhhhHHH
Confidence 456789999999999999999643 1221 1111234789999999999999999997632 222 2235899
Q ss_pred HHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC--C-----ChhHHHHH
Q 014886 148 AVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--K-----NLKEDIEV 219 (416)
Q Consensus 148 aid~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG--~-----~~~~d~~~ 219 (416)
|||||||||+||.+|+|||+||||. ++++++|.+.. .++ . +.++||+++|+|++ + ++++|+++
T Consensus 127 aIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~----~---a~~~Gf~~~Kik~~~g~~~g~~~~~~di~~ 197 (394)
T PRK15440 127 CVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD----L---AKEMGFIGGKMPLHHGPADGDAGLRKNAAM 197 (394)
T ss_pred HHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH----H---HHhCCCCEEEEcCCcCcccchHHHHHHHHH
Confidence 9999999999999999999999996 67899997532 222 1 23689999999994 2 45899999
Q ss_pred HHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCH
Q 014886 220 LRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 298 (416)
Q Consensus 220 v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~ 298 (416)
|+++|++ |+++.||+|+|++||+++|++++++|+++++ .|||||++++|++++++|++. ..+++||+.||+++++
T Consensus 198 v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l--~wiEEPl~~~d~~~~~~L~~~--~~~~i~ia~gE~~~~~ 273 (394)
T PRK15440 198 VADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGL--KWIEECLPPDDYWGYRELKRN--APAGMMVTSGEHEATL 273 (394)
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--cceeCCCCcccHHHHHHHHHh--CCCCCceecCCCccCH
Confidence 9999997 8999999999999999999999999999997 499999999999999999851 1244899999999999
Q ss_pred HHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCcC--Cc--
Q 014886 299 DDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL-- 373 (416)
Q Consensus 299 ~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~~--p~-- 373 (416)
++++++++.+++|++|+|++||| +++++|++++|+++|+++++|+. .++++|++++.+|+.++|+.. |.
T Consensus 274 ~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~~~ 347 (394)
T PRK15440 274 QGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPDAD 347 (394)
T ss_pred HHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCcccc
Confidence 99999999999999999999997 99999999999999999999962 357889999999988888521 11
Q ss_pred ---ccccCCCCcceeEeCcEEEcC--CCCCcccccChhhHHhhh
Q 014886 374 ---LLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNIAWGL 412 (416)
Q Consensus 374 ---~~~~d~~~~~~~~~~G~~~~p--~~PGlGield~~~l~~~~ 412 (416)
....+.+.+.+.++||++.+| ++||||+|+|++++.++.
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~~~~p 391 (394)
T PRK15440 348 TVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCNLKRP 391 (394)
T ss_pred ccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHHhhCC
Confidence 011122223367889999999 999999999999996654
No 20
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=2.6e-59 Score=460.62 Aligned_cols=317 Identities=29% Similarity=0.403 Sum_probs=275.5
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+|+++++++|+++||.++.++++.++.++|||+ ++|.+||||+.|.+.++ |+.+.+...+..+.|.|+ . ..+.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~~-~~~~~~~~~l~~~~~~l~-~-~~~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRYG-ESDASVMAQIMSVVPQLE-K-GLTREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCCC-CCHHHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 799999999999999999999999999999998 68999999999887764 776666665666788886 1 1122222
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK 208 (416)
. . .+ ++ +.+++||||||||++||..|+|+|+||||. ++++++|++++..+++++.+++++++++||++||+|
T Consensus 79 ~-~---~~-~~--~~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlK 151 (321)
T PRK15129 79 Q-K---LL-PA--GAARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLLKVK 151 (321)
T ss_pred H-h---hc-cC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 1 1 12 22 458999999999999999999999999996 568999999988899999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 209 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 209 vG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
++. +.|+++|+++|+..+++.|++|||++|+.++|+++++.|+++++ .|||||++++|+++++++ .+++|
T Consensus 152 v~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~~~p 221 (321)
T PRK15129 152 LDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IHPLP 221 (321)
T ss_pred CCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------ccCCC
Confidence 974 46899999999987789999999999999999999999999987 599999999998887764 35899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++|||++++.++.++. +++|++|+|++|+| ++++++++++|+++|+++++|||+||+++.++++|+ .|+..+.
T Consensus 222 ia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~~~~ 296 (321)
T PRK15129 222 ICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQVRFA 296 (321)
T ss_pred EecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCCcEe
Confidence 99999999999999984 78999999999998 999999999999999999999999999999999999 3667788
Q ss_pred cCcCCcccccCCCCcceeEeCcEEEc
Q 014886 368 DLDTPLLLSEDPVLDGYEVSGAVYKF 393 (416)
Q Consensus 368 e~~~p~~~~~d~~~~~~~~~~G~~~~ 393 (416)
|++++..+.+|+. +++.+++|++.+
T Consensus 297 dl~~~~~~~~d~~-~~~~~~~G~~~~ 321 (321)
T PRK15129 297 DLDGPTWLAVDVE-PALQFTTGELHL 321 (321)
T ss_pred cCCCchhhcccCC-CCeEEeCCEEeC
Confidence 9998877777874 568899998753
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=7.3e-59 Score=457.12 Aligned_cols=311 Identities=42% Similarity=0.661 Sum_probs=280.1
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+|+++++++|+++|+.++.++...++.++|||+|+ |++||||+.+.+.+++++...+...++.+.|.|+|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 47899999999999999999999999999999999 999999999877666676655555566679999999999 9999
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHh-CCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLF-GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LL-Gg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK 208 (416)
++.+.....++ +.+++||||||||++||.+|+|+|+|| |+.+.++++|++++..+++++.+.+++++++||+.||+|
T Consensus 79 ~~~l~~~~~~~--~~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik 156 (316)
T cd03319 79 LEALQELLPGN--GAARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIK 156 (316)
T ss_pred HHHHHHhccCC--hHHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 99997654433 458999999999999999999999995 455678999988888889999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 209 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 209 vG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
+|.+++.|+++|+++|+..++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++++|
T Consensus 157 ~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~~ip 230 (316)
T cd03319 157 LGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KSPLP 230 (316)
T ss_pred eCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cCCCC
Confidence 9988899999999999983399999999999999999999999999987 59999999999999999874 78999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|+.++++|+++++ ..+.
T Consensus 231 Ia~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~~~~ 308 (316)
T cd03319 231 IMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--ADFV 308 (316)
T ss_pred EEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--CcEE
Confidence 999999999999999999999999999999997 9999999999999999999999999999999999999987 3455
Q ss_pred cCcCC
Q 014886 368 DLDTP 372 (416)
Q Consensus 368 e~~~p 372 (416)
|++++
T Consensus 309 ~~~~~ 313 (316)
T cd03319 309 DLDGP 313 (316)
T ss_pred eccCc
Confidence 55543
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=1.9e-56 Score=429.44 Aligned_cols=257 Identities=35% Similarity=0.563 Sum_probs=244.0
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (416)
|+++++++|+++||.++.++.+.++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 57899999999999999999999999999999999999999975
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 014886 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (416)
Q Consensus 131 ~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG 210 (416)
++||||||||+.||.+|+|+++|+|+.++++++|++++..+++++.+++++++++||++||+|+|
T Consensus 45 ---------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg 109 (265)
T cd03315 45 ---------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG 109 (265)
T ss_pred ---------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC
Confidence 68999999999999999999999999888999999988888899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeE
Q 014886 211 KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (416)
Q Consensus 211 ~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPI 289 (416)
.++++|+++|++||+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++.+|++++++|++ ++++||
T Consensus 110 ~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ipi 183 (265)
T cd03315 110 RDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATDTPI 183 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCCCCE
Confidence 8889999999999998 7899999999999999999999999999987 59999999999999999875 789999
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 014886 290 AADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 290 a~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|++++++++|++++++..
T Consensus 184 a~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~ 259 (265)
T cd03315 184 MADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRAV 259 (265)
T ss_pred EECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999998 9999999999999999999999999999999999999988743
No 23
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=1.3e-53 Score=417.11 Aligned_cols=289 Identities=24% Similarity=0.308 Sum_probs=249.2
Q ss_pred EEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014886 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV 133 (416)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l 133 (416)
|++++|++.||.++.++.+.++.++|||+ ++|++||||+.|.|+|++|+...+...+..+.+.++|+++.++.+
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~~----- 74 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAIDD----- 74 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhccc-----
Confidence 46889999999999999999999999999 569999999999999999998887777777888888877553321
Q ss_pred HhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-C
Q 014886 134 AGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N 212 (416)
Q Consensus 134 ~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~ 212 (416)
..+++++||||||||+.||. +.|. ...+...+++..+++++..++.+ ++||++||+|+|. +
T Consensus 75 -------~~~~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG~~~ 136 (307)
T TIGR01927 75 -------QLPSVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVGVGE 136 (307)
T ss_pred -------cCcHHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeCCCC
Confidence 12457999999999999997 2221 12223346677788888776665 7999999999994 7
Q ss_pred hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 213 LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 213 ~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
++.|+++|++||+. +++++|++|+|++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++++|
T Consensus 137 ~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~~~P 208 (307)
T TIGR01927 137 LAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----ATGTA 208 (307)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hCCCC
Confidence 89999999999997 6789999999999999999999999997 776 5999999765 78888874 78999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++|||+++.+++.++++.+++|++|+|++|+| ++++++++++|+++|+++++||++||+|+.++++|+++++++....
T Consensus 209 ia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~~~~ 288 (307)
T TIGR01927 209 IALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPDPAA 288 (307)
T ss_pred EEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999877766
Q ss_pred cCcCCcc
Q 014886 368 DLDTPLL 374 (416)
Q Consensus 368 e~~~p~~ 374 (416)
.++++..
T Consensus 289 ~~~~~~~ 295 (307)
T TIGR01927 289 VGFTTAL 295 (307)
T ss_pred CCccHHH
Confidence 6666543
No 24
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=6.7e-54 Score=411.18 Aligned_cols=250 Identities=32% Similarity=0.463 Sum_probs=231.2
Q ss_pred EEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014886 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (416)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (416)
+++++++|+++||.++.++++.++.++|||+|++|.+||||+.+.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 5678999999999999999999999999999999999999998632
Q ss_pred HHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC
Q 014886 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 210 (416)
Q Consensus 132 ~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG 210 (416)
+++||||||||+.||..| ||. ++++++|.+++..++ +..+++++++++||++||+|+|
T Consensus 48 -------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~KiKvg 106 (263)
T cd03320 48 -------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKLKVG 106 (263)
T ss_pred -------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEEEEC
Confidence 589999999999999999 665 678999999888777 5557788888999999999998
Q ss_pred C-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 211 K-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 211 ~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
. ++++|+++|+++|+. +++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++++ +++|
T Consensus 107 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~d~~~~~~l~------~~~P 178 (263)
T cd03320 107 ATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRI--EYIEQPLPPDDLAELRRLA------AGVP 178 (263)
T ss_pred CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCC--ceEECCCChHHHHHHHHhh------cCCC
Confidence 4 678999999999998 6799999999999999999999999999987 5999999999999998873 6899
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCC
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
|++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++++|++++++|+++++|+.
T Consensus 179 Ia~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 179 IALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred eeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999998874
No 25
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=6.3e-52 Score=407.81 Aligned_cols=296 Identities=22% Similarity=0.238 Sum_probs=250.5
Q ss_pred eEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHH
Q 014886 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS 128 (416)
Q Consensus 49 ~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (416)
++|+++++++|++.||.++.++++.++.++|+|+ ++|++||||+.|.|+|++|+...+...+....+.+.+.+.....
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~~- 79 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDEL- 79 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCcccccc-
Confidence 4799999999999999999999999999999997 78999999999999999999888776666544334444333211
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEe
Q 014886 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 208 (416)
Q Consensus 129 ~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiK 208 (416)
...+.+++++++|+||+.||..|.|++.. .+++..+++++.++++++ +||++||+|
T Consensus 80 -----------~~~~~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~KvK 135 (322)
T PRK05105 80 -----------SQYPSVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVAKVK 135 (322)
T ss_pred -----------ccCcHHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEEEEE
Confidence 12346789999999999999999987521 334556788888888876 899999999
Q ss_pred cC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 209 VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 209 vG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
+| .++++|+++|++||+..+++.|++|+|++|++++|++++++|++ +++ .|||||++. .+++++|++ +
T Consensus 136 vG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~----~ 207 (322)
T PRK05105 136 VGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR----A 207 (322)
T ss_pred ECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH----h
Confidence 99 57899999999999987899999999999999999999999998 876 599999964 456777764 7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++||++|||+++.. +...+ .+++|++|+|++|+| ++++++++++|+++|+++++|||+||+|+.++++|+++++++
T Consensus 208 ~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~ 285 (322)
T PRK05105 208 TGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAWLTP 285 (322)
T ss_pred CCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHhcCC
Confidence 899999999999975 44444 567999999999998 999999999999999999999999999999999999999855
Q ss_pred CceecCcCCcccccCCC
Q 014886 364 FKFIDLDTPLLLSEDPV 380 (416)
Q Consensus 364 ~~~~e~~~p~~~~~d~~ 380 (416)
..++.++++.++.+|+.
T Consensus 286 ~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 286 DTIPGLDTLDLMQAQLV 302 (322)
T ss_pred CCCCCCChHHHHhhccc
Confidence 55677887776666654
No 26
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=7.6e-52 Score=407.08 Aligned_cols=283 Identities=20% Similarity=0.298 Sum_probs=236.7
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (416)
+++++++++|++.||.++.++.+.++.++|+|+|++|++||||+.|.|.|++|+...+...++.+.|.+.+. ++
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------QI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------HH
Confidence 577999999999999999999999999999999999999999999999999998877765554444544321 11
Q ss_pred HHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEec
Q 014886 130 FGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (416)
Q Consensus 130 ~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv 209 (416)
..+... ++.+++|||+|+.|+.+|..+. ....++++.. +.+++++.+++++++++||++||+|+
T Consensus 78 -~~~~~~-----~~~~~~aie~A~d~~~~~~~~~--------~~~~~~~~~~--i~~~~~~~~~a~~~~~~G~~~~KvKv 141 (320)
T PRK02714 78 -FSIPDA-----LPACQFGFESALENESGSRSNV--------TLNPLSYSAL--LPAGEAALQQWQTLWQQGYRTFKWKI 141 (320)
T ss_pred -Hhhhhc-----CCHHHHHHHHHHHHHhcccccC--------CcCCCceeee--cCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 112111 2357999999944455554321 1123444433 34567888899999999999999999
Q ss_pred CC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 210 GK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 210 G~-~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
|. ++++|+++|++||+. ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++.+|++++++|++ +
T Consensus 142 G~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~----~ 215 (320)
T PRK02714 142 GVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ----D 215 (320)
T ss_pred CCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH----h
Confidence 95 578999999999998 7899999999999999999999999998 676 59999999999999999874 7
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++||++|||++++.|+.++++.+++|++|+|++|+| ++++ .++|+++|+++++||++||+|+.++++|+++++++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~ 292 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAAELSR 292 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999998 8754 47899999999999999999999999999999886
No 27
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=1.1e-50 Score=406.20 Aligned_cols=286 Identities=17% Similarity=0.227 Sum_probs=243.9
Q ss_pred eeeEEEEEEEECCCceEEEEeccCCccCccc-------HHHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhC-CCChhh
Q 014886 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAED-------QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQFA 143 (416)
Q Consensus 73 ~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~-------~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~~~ 143 (416)
..+.++|+|+|++|.+|||||.+. .|++++ ...+...++ .++|.|+|+|+.+++.+++.|.... .+....
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~~~ 126 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNLHT 126 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcchh
Confidence 357999999999999999999873 566653 444445555 4799999999999999999998753 221124
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHhC------CCCceeeeeEeecC---CCHHHHHHHHHHHHHcC-CCEEEEecCCCh
Q 014886 144 SVRAAVEMALIDAVAKSVSMPLWRLFG------GVSNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLKLKVGKNL 213 (416)
Q Consensus 144 ~a~said~ALwDl~gk~~g~pl~~LLG------g~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~G-~~~~KiKvG~~~ 213 (416)
++++|||+||||++||..|+|+|+||| +.++++|+|.+++. .+++++...+++++++| |+.|| |+|.+.
T Consensus 127 a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~~~ 205 (408)
T TIGR01502 127 AIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGLDG 205 (408)
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecCCH
Confidence 578999999999999999999999998 55678999999874 56899999999999998 99999 899765
Q ss_pred h-------HHHHHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHHHh----CCCCceeeecCCCCCC----HH
Q 014886 214 K-------EDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYE----MGVTPVLFEQPVHRDD----WE 272 (416)
Q Consensus 214 ~-------~d~~~v~avr~~g~~~~L~vDaN~------~w~~~~A~~~~~~L~~----~~l~~~~iEeP~~~~d----~~ 272 (416)
. ++.++|+++|+.+++..|++|+|+ +||+++|+++++.|++ +++ |||||++.+| ++
T Consensus 206 ~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~~e 282 (408)
T TIGR01502 206 EKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQIE 282 (408)
T ss_pred HHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhhHH
Confidence 4 444667777744668899999998 9999999999999986 553 9999999865 99
Q ss_pred HHHHhHHhh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHH
Q 014886 273 GLGHVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRL 349 (416)
Q Consensus 273 ~~~~l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~i 349 (416)
++++|++.+ ++.+++||++||++++++|++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ||++
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCCHH
Confidence 999997521 1236899999999999999999999999999999999998 999999999999999999999986 9999
Q ss_pred HHHHHHHHHccCCC
Q 014886 350 AMGFAGHLSAGLGC 363 (416)
Q Consensus 350 g~~a~~hlaaa~~~ 363 (416)
+.++++|++++.+.
T Consensus 363 ~~aa~~Hlaaa~~~ 376 (408)
T TIGR01502 363 SAEVTTHVGMATGA 376 (408)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998764
No 28
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.3e-51 Score=405.13 Aligned_cols=287 Identities=17% Similarity=0.254 Sum_probs=231.7
Q ss_pred eEEEEEEEECCCceEEEEeccC--CccCcccH----HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhC-CCCh-hhHH
Q 014886 75 ENVAIRIELSNGCVGWGEAPVL--PHVTAEDQ----QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLL-PGHQ-FASV 145 (416)
Q Consensus 75 ~~~iV~v~t~~G~~G~GE~~~~--~~~~~e~~----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~-~g~~-~~~a 145 (416)
+.++|||+|++|++||||+.+. +..++++. ..+...++ .++|.|+|+|+.+++.+|+.|.+.. .|+. ...+
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~~~aa 92 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRLHTAI 92 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcchhhH
Confidence 6899999999999999998753 11122322 22333344 4789999999999999999997643 2332 2357
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHhC-----CC-CceeeeeEeecCC---CHHHHHHHHHHHHH---------cCCCEEEE
Q 014886 146 RAAVEMALIDAVAKSVSMPLWRLFG-----GV-SNTITTDITIPIV---SPAEAAELASKYRK---------QGFTTLKL 207 (416)
Q Consensus 146 ~said~ALwDl~gk~~g~pl~~LLG-----g~-~~~v~~~~~~~~~---~~~~~~~~~~~~~~---------~G~~~~Ki 207 (416)
+||||+||||++||.+|+|||+||| |. +.++++|.+++.. ..+++.++++++++ +||+.+|+
T Consensus 93 ksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~K~ 172 (369)
T cd03314 93 RYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGEKL 172 (369)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHHHH
Confidence 8999999999999999999999999 42 5689999876543 34666666555553 36666665
Q ss_pred ecCCChhHHHHHHHHHHHhCCCcEEEEeCCCC----C--CHHHHHHHHHHHHhC-C-CCceeeecCCCCCC----HHHHH
Q 014886 208 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEG----Y--KPQEAVEVLEKLYEM-G-VTPVLFEQPVHRDD----WEGLG 275 (416)
Q Consensus 208 KvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~----w--~~~~A~~~~~~L~~~-~-l~~~~iEeP~~~~d----~~~~~ 275 (416)
|. ++++|.++|+++|..|+++.|++|+|++ | |+++|+++++.|+++ + + +.|||||++++| +++++
T Consensus 173 ~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~~a 249 (369)
T cd03314 173 LE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIERMA 249 (369)
T ss_pred HH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHHHH
Confidence 54 4578899999999448999999999986 6 999999999999975 2 2 369999999865 89999
Q ss_pred HhHHhh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHH
Q 014886 276 HVSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMG 352 (416)
Q Consensus 276 ~l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~ 352 (416)
+|++.. ++.+++||++||+++++++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++. +++++.+
T Consensus 250 ~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~~a 329 (369)
T cd03314 250 ALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDISAR 329 (369)
T ss_pred HHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHHHH
Confidence 997521 1125899999999999999999999999999999999998 999999999999999999999874 9999999
Q ss_pred HHHHHHccCCCC
Q 014886 353 FAGHLSAGLGCF 364 (416)
Q Consensus 353 a~~hlaaa~~~~ 364 (416)
+++|+++++++.
T Consensus 330 a~lHlaaa~~~~ 341 (369)
T cd03314 330 VTVHVALATRAD 341 (369)
T ss_pred HHHHHHHhcCCc
Confidence 999999988764
No 29
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=3.6e-50 Score=463.50 Aligned_cols=312 Identities=24% Similarity=0.308 Sum_probs=257.5
Q ss_pred cccCceeeEEEeEEEEEEEEeccccceeecCce--eeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHH----
Q 014886 38 KNLTQTFTVDVQRAENRPLNVPLIAPFTIATSR--LDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA---- 111 (416)
Q Consensus 38 ~~~~~~~~mkI~~v~~~~~~~pl~~pf~~a~~~--~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~---- 111 (416)
...++.+.|||++|+++++++|++.||.++.++ ...++.++|+|+|++|.+||||+.|.+. ++|+...+...+
T Consensus 923 ~~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~-~~et~~~~~~~l~~~~ 1001 (1655)
T PLN02980 923 SIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEI-HEEDLLDVEEQLRFLL 1001 (1655)
T ss_pred ccccccccceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCC-CccccccHHHHHHHHH
Confidence 356778899999999999999999999999875 3468999999999999999999998754 345433222111
Q ss_pred --------HHHHHHHhCCCCCCHHHHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc---------
Q 014886 112 --------SEACEVLKESPAMALGSVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN--------- 174 (416)
Q Consensus 112 --------~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~--------- 174 (416)
..+.|.|+|+++ +.++..+.. ..+..++++++||||||||+.||..|+|+|+||||.++
T Consensus 1002 ~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~psa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~~~~~~~~ 1077 (1655)
T PLN02980 1002 HVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFPSVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSEQSH 1077 (1655)
T ss_pred HHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccchHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceecccc
Confidence 123577777743 223444421 11223467999999999999999999999999988432
Q ss_pred eeeeeEee-cCCCHHHHHHHHHHHHHcCCCEEEEecCC--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHH
Q 014886 175 TITTDITI-PIVSPAEAAELASKYRKQGFTTLKLKVGK--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLE 250 (416)
Q Consensus 175 ~v~~~~~~-~~~~~~~~~~~~~~~~~~G~~~~KiKvG~--~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~ 250 (416)
.++++..+ +..+++++.+++++++++||++||+|+|. ++++|+++|++||++ |++++||+|||++|+.++|+++++
T Consensus 1078 ~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~~~~ 1157 (1655)
T PLN02980 1078 SVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIEFGS 1157 (1655)
T ss_pred ceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHH
Confidence 34555444 35588999999999999999999999994 688999999999997 789999999999999999999999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH-----HHHHHHcCCCCEEEeCCCCCc-hHH
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-----VKKIVKGNLADVINIKLAKVG-VLG 324 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d-----~~~~i~~~a~d~v~~k~~k~G-i~~ 324 (416)
+|+++++ .|||||++ +.+++++|++ ++++||++||++++..+ ++++++.++ +++++|++++| +++
T Consensus 1158 ~L~~~~i--~~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~~-~~i~iK~~~~GGit~ 1228 (1655)
T PLN02980 1158 LVKSCNL--KYIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPGI-VAVVIKPSVVGGFEN 1228 (1655)
T ss_pred HHhhcCC--CEEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCCC-eEEEeChhhhCCHHH
Confidence 9999987 59999997 4678888864 78999999999998754 677777764 58899999998 999
Q ss_pred HHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 325 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 325 ~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+++++++|+++|+++++||++||+||+++++|+|+.++.
T Consensus 1229 ~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~~ 1267 (1655)
T PLN02980 1229 AALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLEM 1267 (1655)
T ss_pred HHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhchh
Confidence 999999999999999999999999999999999998743
No 30
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=3.8e-50 Score=377.76 Aligned_cols=225 Identities=31% Similarity=0.545 Sum_probs=212.0
Q ss_pred EEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 014886 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (416)
Q Consensus 51 v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (416)
|+++++++|++.||.++.++.+.++.++|||+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4788999999999999999999999999999999999999998
Q ss_pred HHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEec
Q 014886 131 GVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV 209 (416)
Q Consensus 131 ~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKv 209 (416)
++||||||||+.||.+|+|+|+||||+ ++++++|.+
T Consensus 44 ---------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~---------------------------- 80 (229)
T cd00308 44 ---------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS---------------------------- 80 (229)
T ss_pred ---------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH----------------------------
Confidence 689999999999999999999999996 568888864
Q ss_pred CCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe
Q 014886 210 GKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 288 (416)
Q Consensus 210 G~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP 288 (416)
+++|+++|+. +++++|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ .+++|
T Consensus 81 -------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~~~p 147 (229)
T cd00308 81 -------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RTGIP 147 (229)
T ss_pred -------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hCCCC
Confidence 8899999998 7899999999999999999999999999986 59999999999999999975 78999
Q ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCcee
Q 014886 289 VAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 289 Ia~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~ 367 (416)
|++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++++++|+.+.
T Consensus 148 Ia~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~~~~ 227 (229)
T cd00308 148 IAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPNDRAI 227 (229)
T ss_pred EEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCchhh
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999987765
Q ss_pred c
Q 014886 368 D 368 (416)
Q Consensus 368 e 368 (416)
|
T Consensus 228 e 228 (229)
T cd00308 228 E 228 (229)
T ss_pred c
Confidence 5
No 31
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=4.6e-44 Score=350.88 Aligned_cols=287 Identities=26% Similarity=0.372 Sum_probs=238.9
Q ss_pred EEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 014886 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (416)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (416)
+.+.|++||+..| ..++.|+.++++ |-.||||.+|.+.|+.|... .+
T Consensus 13 ~~~~~~~p~~~~~----~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~~~----------~~-------------- 59 (327)
T PRK02901 13 RAHVVALPMRVRF----RGITVREAVLIE-----GPAGWGEFSPFLEYDPAEAA----------AW-------------- 59 (327)
T ss_pred cCeEEeccccccc----CCcceeEEEEEe-----cCCceEEecCCCCCCHHHHH----------HH--------------
Confidence 4567888887544 446788999998 99999999999888765210 00
Q ss_pred HHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC
Q 014886 132 VVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 211 (416)
Q Consensus 132 ~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~ 211 (416)
..+++|.|-. |-|- ..+++|++|.+++..+++++.+.++++ .||+++|||+|.
T Consensus 60 -------------~~~~~~~~~~-------~~~~-----~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvKVg~ 112 (327)
T PRK02901 60 -------------LASAIEAAYG-------GPPP-----PVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVKVAE 112 (327)
T ss_pred -------------HHHHHHhhhc-------cCCc-----ccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEEECC
Confidence 1344554421 1121 345789999998888887776666654 699999999973
Q ss_pred ---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 212 ---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 212 ---~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
++++|+++|++||+. ||+..|++|+|++||+++|+++++.| +++++ .||||||+. ++++++|++ +++
T Consensus 113 ~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~----~~~ 184 (327)
T PRK02901 113 PGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR----RVG 184 (327)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----hCC
Confidence 689999999999998 79999999999999999999999999 77886 599999974 888999875 789
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCc
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFK 365 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~ 365 (416)
+||++|||+++..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||+++|+||+++++|+++++++..
T Consensus 185 vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp~~~ 261 (327)
T PRK02901 185 VPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALPELD 261 (327)
T ss_pred CCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999998 988887 57899999999999999999999999999999876
Q ss_pred e-ecCcCCcccccCCCCcceeEeCcEEEcCCCCCcccccChhhHHhhhccC
Q 014886 366 F-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIAWGLQTS 415 (416)
Q Consensus 366 ~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~PGlGield~~~l~~~~~~~ 415 (416)
+ +++++...+..|+ ..++.++||++.+|+ +++|++.+++|..+.
T Consensus 262 ~~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l~~~~~~~ 306 (327)
T PRK02901 262 HACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARLAALAADP 306 (327)
T ss_pred cccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHHHhccCCH
Confidence 5 6776544455677 677899999999998 899999999998654
No 32
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=1.9e-39 Score=329.60 Aligned_cols=300 Identities=22% Similarity=0.286 Sum_probs=233.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMV 109 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~~~ 109 (416)
|+|++|..+.+- .++| ++.|.|+|+|++|.+|+|+++.. ..|.++++..++.
T Consensus 2 ~~I~~v~~r~i~--------dsrg----~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSRG----NPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 589999988862 2333 46799999999999999997531 0144555666666
Q ss_pred HHH-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc---eeeeeEe
Q 014886 110 KAS-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---TITTDIT 181 (416)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~---~v~~~~~ 181 (416)
.++ .+.|.|+|+|+.+.+.+++.|.+.. .++....+++|||||+||+.||..|+|||+||||..+ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 665 4899999999999999999997531 1111146899999999999999999999999999643 4555554
Q ss_pred ecC----CCHHHH------------HHHHHHHHHcCCCEEEE---------ecC------CChhHHHHHHHHHHHh----
Q 014886 182 IPI----VSPAEA------------AELASKYRKQGFTTLKL---------KVG------KNLKEDIEVLRAIRAV---- 226 (416)
Q Consensus 182 ~~~----~~~~~~------------~~~~~~~~~~G~~~~Ki---------KvG------~~~~~d~~~v~avr~~---- 226 (416)
++. ..+.++ .+++.+...++|+.+|. ++| ++++.|.++|+.||++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 111111 13444455567888886 355 3567899999999986
Q ss_pred ----CCCcEEEEeCC-------C-------CCCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--
Q 014886 227 ----HPDSSFILDAN-------E-------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-- 285 (416)
Q Consensus 227 ----g~~~~L~vDaN-------~-------~w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~-- 285 (416)
|+++.|+||+| + .|+.+++++++.. +++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 67899999993 4 3566777766444 566886 69999999999999999985 45
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 014886 286 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 286 ~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~-~~~~es~ig~~a~~hlaaa~~ 362 (416)
.+||++||+ ++++.+++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |++.||..+..+.+|+++..+
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~ 383 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAG 383 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCc
Confidence 599999997 567999999999999999999999998 99999999999999998665 889999999888888887654
Q ss_pred C
Q 014886 363 C 363 (416)
Q Consensus 363 ~ 363 (416)
.
T Consensus 384 ~ 384 (425)
T PRK00077 384 Q 384 (425)
T ss_pred c
Confidence 3
No 33
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=2.6e-38 Score=319.64 Aligned_cols=283 Identities=21% Similarity=0.314 Sum_probs=225.0
Q ss_pred eeEEEEEEEECCCceEEEEeccC--C--------------ccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhh
Q 014886 74 VENVAIRIELSNGCVGWGEAPVL--P--------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~--~--------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 136 (416)
++++.|+|+|++|.+|+|++++. . .|+++++..++..+++ +.|.|+|+++.+.+.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 46899999999999999998641 1 2566777777777764 78999999999999999988653
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCc-ee--eeeEeecC-----C--C-------H--HHHHHH
Q 014886 137 L----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TI--TTDITIPI-----V--S-------P--AEAAEL 193 (416)
Q Consensus 137 ~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~-~v--~~~~~~~~-----~--~-------~--~~~~~~ 193 (416)
. .++..+.+++|||||+||+.||.+|+|||++|||..+ .+ |.|..++. . + | .+..++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 2 1222246899999999999999999999999999644 44 44432221 1 1 1 222356
Q ss_pred HHHHHHcCCCEEE-----------EecC------CChhHHHHHHHHHHHh--------CCCcEEEEeC------------
Q 014886 194 ASKYRKQGFTTLK-----------LKVG------KNLKEDIEVLRAIRAV--------HPDSSFILDA------------ 236 (416)
Q Consensus 194 ~~~~~~~G~~~~K-----------iKvG------~~~~~d~~~v~avr~~--------g~~~~L~vDa------------ 236 (416)
+.++..+||+.+| +++| ++++.|.++|+.+|++ |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6677788898888 3344 4567899988888873 3489999999
Q ss_pred -----CCCCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--CCeEEeCCC-CCCHHHHHHHHHc
Q 014886 237 -----NEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKG 307 (416)
Q Consensus 237 -----N~~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~--~iPIa~dEs-~~~~~d~~~~i~~ 307 (416)
|+.||.++++++++.| +++++ .|||||++++|++++++|++ ++ .+||++||+ ++++.+++++++.
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~----~~g~~ipi~gdE~~~~~~~~~~~~i~~ 326 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTA----KLGDKIQIVGDDLFVTNPERLKKGIEK 326 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHH----hcCCCCeEEcCCcccCCHHHHHHHHHh
Confidence 4558889999988886 56886 69999999999999999986 44 899999996 5789999999999
Q ss_pred CCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEE-ccCCchHHHHHHHHHHHccCC
Q 014886 308 NLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 308 ~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~-~~~~es~ig~~a~~hlaaa~~ 362 (416)
+++|++++|++++| ++++++++++|+++|+++++ |++.||.....+.+|++.+.+
T Consensus 327 ~a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~ 383 (408)
T cd03313 327 KAANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAG 383 (408)
T ss_pred CCCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcC
Confidence 99999999999998 99999999999999999977 778788887666666655444
No 34
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=1.4e-37 Score=315.93 Aligned_cols=285 Identities=21% Similarity=0.299 Sum_probs=217.8
Q ss_pred eeEEEEEEEECCCceEEEEeccCC----------------ccCcccHHHHHHHHHH-HHHHHhCCCCCCHHHHHHHHHhh
Q 014886 74 VENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKASE-ACEVLKESPAMALGSVFGVVAGL 136 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~l~~~ 136 (416)
.+++.|+|+|++|.+|+++++... .|.+.++..++..+++ +.|.|+|++|.+.+.+|+.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 367999999999999999975421 1233344556655654 78999999999999999999653
Q ss_pred --CCCC--hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CceeeeeEee---c-C-----CCHHHH---------HHH
Q 014886 137 --LPGH--QFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITI---P-I-----VSPAEA---------AEL 193 (416)
Q Consensus 137 --~~g~--~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v~~~~~~---~-~-----~~~~~~---------~~~ 193 (416)
.++. ....+++|||||+||+.||.+|+|||+||||. +.++|++... + . .+.++. .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 1111 12368999999999999999999999999996 4466666432 1 1 123332 233
Q ss_pred HHHHHHcCCCEEE--Ee-------cC------CCh---hHHHHH----HHHHHHh-CCCcEEEEeCCC--C---------
Q 014886 194 ASKYRKQGFTTLK--LK-------VG------KNL---KEDIEV----LRAIRAV-HPDSSFILDANE--G--------- 239 (416)
Q Consensus 194 ~~~~~~~G~~~~K--iK-------vG------~~~---~~d~~~----v~avr~~-g~~~~L~vDaN~--~--------- 239 (416)
+.+...+||+.+| +| +| +++ +++++. +++++.. |+++.|++|+|. .
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3344447899999 44 45 222 233343 3333334 678999999983 2
Q ss_pred -------CCHHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC--CCeEEeCCCC-CCHHHHHHHHHcC
Q 014886 240 -------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADESC-RSLDDVKKIVKGN 308 (416)
Q Consensus 240 -------w~~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~--~iPIa~dEs~-~~~~d~~~~i~~~ 308 (416)
|+.++|+++++. ++++++ .|||||++.+|++++++|++ ++ .+||++||+. +++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 466799999995 688986 59999999999999999975 56 7999999985 4699999999999
Q ss_pred CCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEE-EccCCchHHHHHHHHHHHccCCCC
Q 014886 309 LADVINIKLAKVG-VLGALEIIEVVRASGLNLM-IGGMVETRLAMGFAGHLSAGLGCF 364 (416)
Q Consensus 309 a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~-~~~~~es~ig~~a~~hlaaa~~~~ 364 (416)
++|++++|++++| ++++++++++|+++|+.++ .|++.||.++..+.+|+++..+..
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~i 386 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQI 386 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCcc
Confidence 9999999999998 9999999999999999955 688889999999999998876543
No 35
>PLN00191 enolase
Probab=100.00 E-value=2.6e-31 Score=269.75 Aligned_cols=299 Identities=19% Similarity=0.238 Sum_probs=226.4
Q ss_pred EEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCc----------eEEEEeccCC----ccCcccHHHHHHHH
Q 014886 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP----HVTAEDQQTAMVKA 111 (416)
Q Consensus 46 mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~----------~G~GE~~~~~----~~~~e~~~~~~~~~ 111 (416)
|+|++|..+.+- .|+| +++|.|+|+|++|. +|++|+.... .|.+..+..++..+
T Consensus 26 ~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~v 93 (457)
T PLN00191 26 ATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKNV 93 (457)
T ss_pred CeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHHH
Confidence 699999988862 2333 46799999999998 7999985431 14455666677666
Q ss_pred H-HHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCC-CceeeeeEe-
Q 014886 112 S-EACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGV-SNTITTDIT- 181 (416)
Q Consensus 112 ~-~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LL---Gg~-~~~v~~~~~- 181 (416)
+ .+.|.|+|+++.+.+.+.+.|.... .+...+.++.||+||+|++.|+..|+|||++| ||. ...+|++..
T Consensus 94 ~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~n 173 (457)
T PLN00191 94 NEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAFN 173 (457)
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeEE
Confidence 5 4899999999999999888886542 12223568999999999999999999999999 774 445666541
Q ss_pred -e--cC------------------CCHHHH-------HHHHHHHHHc--CCCEEEEecC------CChhHHHHHHHHHHH
Q 014886 182 -I--PI------------------VSPAEA-------AELASKYRKQ--GFTTLKLKVG------KNLKEDIEVLRAIRA 225 (416)
Q Consensus 182 -~--~~------------------~~~~~~-------~~~~~~~~~~--G~~~~KiKvG------~~~~~d~~~v~avr~ 225 (416)
+ +. .+..+. .....+.++. |... ..+| ++++.+.+.++.+++
T Consensus 174 iinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~e 251 (457)
T PLN00191 174 VINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLKE 251 (457)
T ss_pred eecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHHH
Confidence 1 10 111121 1111222221 3321 1233 345566666666665
Q ss_pred h----C--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHHHh-CCCCceeeecCCCCCCHHHHH
Q 014886 226 V----H--PDSSFILDANEG--------Y---------------KPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLG 275 (416)
Q Consensus 226 ~----g--~~~~L~vDaN~~--------w---------------~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~ 275 (416)
+ | +++.|.+|+..+ | |.++++++.+.|.+ |++ .|||||++.+|+++++
T Consensus 252 Ai~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~~ 329 (457)
T PLN00191 252 AIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHWA 329 (457)
T ss_pred HHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHHH
Confidence 3 3 579999998543 3 78899999999755 886 6999999999999999
Q ss_pred HhHHhhhccCCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHH
Q 014886 276 HVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMG 352 (416)
Q Consensus 276 ~l~~~~r~~~~iPIa~dEs~-~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~ 352 (416)
+|++ +..+||++||+. +++.+++++++.+++|++++|++++| ++++++++++|+++|+++++++ +.||+++.+
T Consensus 330 ~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~~ 405 (457)
T PLN00191 330 KLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSFI 405 (457)
T ss_pred HHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHHH
Confidence 9975 688999999996 88999999999999999999999998 9999999999999999999965 999999999
Q ss_pred HHHHHHccCCCC
Q 014886 353 FAGHLSAGLGCF 364 (416)
Q Consensus 353 a~~hlaaa~~~~ 364 (416)
+.+|+|+..+..
T Consensus 406 Adlava~~~~~i 417 (457)
T PLN00191 406 ADLAVGLATGQI 417 (457)
T ss_pred HHHHHHhCCCcc
Confidence 999999887643
No 36
>PTZ00081 enolase; Provisional
Probab=99.97 E-value=6.2e-29 Score=251.57 Aligned_cols=297 Identities=21% Similarity=0.287 Sum_probs=213.7
Q ss_pred eEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCc----------eEEEEeccCC-----ccCcccHHHHHH
Q 014886 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP-----HVTAEDQQTAMV 109 (416)
Q Consensus 45 ~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~----------~G~GE~~~~~-----~~~~e~~~~~~~ 109 (416)
+|+|++|..+.+- .|+| +++|.|+|+|++|. +|++|+.... .|.+..+..++.
T Consensus 1 ~~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~ 68 (439)
T PTZ00081 1 MSTIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVE 68 (439)
T ss_pred CcEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHH
Confidence 4799999988762 2333 46799999999998 9999985422 244556666776
Q ss_pred HHHH-HHHHHhCCCCCCHHHHHHHHHhhCC----------CChhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCCC--
Q 014886 110 KASE-ACEVLKESPAMALGSVFGVVAGLLP----------GHQFASVRAAVEMALIDAVAKSVSMPLWRLF---GGVS-- 173 (416)
Q Consensus 110 ~~~~-~~~~l~g~~~~~~~~~~~~l~~~~~----------g~~~~~a~said~ALwDl~gk~~g~pl~~LL---Gg~~-- 173 (416)
.+++ +.|.|+|+++.+.+.+.+.|.+.+. +...+.++.|++||+|++.|+..|+|||++| ||..
T Consensus 69 ~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~ 148 (439)
T PTZ00081 69 NVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTD 148 (439)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccC
Confidence 6654 7999999999999999888866211 1122568999999999999999999999999 6641
Q ss_pred -c--eeeeeEeecC--------------------CCHHHH-------HHHHHHHHHc--CCCEEEEecC------CChhH
Q 014886 174 -N--TITTDITIPI--------------------VSPAEA-------AELASKYRKQ--GFTTLKLKVG------KNLKE 215 (416)
Q Consensus 174 -~--~v~~~~~~~~--------------------~~~~~~-------~~~~~~~~~~--G~~~~KiKvG------~~~~~ 215 (416)
. ++|.+..+.. .+..+. ....++.++. |... ..+| ++++.
T Consensus 149 ~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~ 226 (439)
T PTZ00081 149 KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKD 226 (439)
T ss_pred CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCC
Confidence 1 3455542221 111111 1112222222 3321 1233 23344
Q ss_pred HHHHHHHH----HHhC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHHHhCCCCceeeec
Q 014886 216 DIEVLRAI----RAVH--PDSSFILDANE------------------------GYKPQEAVEVL-EKLYEMGVTPVLFEQ 264 (416)
Q Consensus 216 d~~~v~av----r~~g--~~~~L~vDaN~------------------------~w~~~~A~~~~-~~L~~~~l~~~~iEe 264 (416)
+.+.++.+ .++| +++.|.+|+.. .++.+|.+++. +.++++++ .||||
T Consensus 227 ~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IED 304 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIED 304 (439)
T ss_pred HHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEc
Confidence 44444444 4443 46888888743 25566666643 67889986 69999
Q ss_pred CCCCCCHHHHHHhHHhhhccC--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEE
Q 014886 265 PVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~--~iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~ 340 (416)
|++.+|++++++|++ ++ .+||+.||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.++
T Consensus 305 Pl~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 305 PFDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred CCCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 999999999999986 45 799999997 577999999999999999999999998 9999999999999999999
Q ss_pred EccCC-chHHHHHHHHHHHccCCC
Q 014886 341 IGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 341 ~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
+++.. ||. ..+.+|||.++..
T Consensus 381 ishrsgETe--d~~iadLAVa~~~ 402 (439)
T PTZ00081 381 VSHRSGETE--DTFIADLVVGLGT 402 (439)
T ss_pred EeCCCchhH--HHHHHHHHHHcCC
Confidence 96654 555 5677799988764
No 37
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.94 E-value=3.2e-26 Score=205.36 Aligned_cols=274 Identities=21% Similarity=0.259 Sum_probs=210.7
Q ss_pred EEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCCHHH
Q 014886 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALGS 128 (416)
Q Consensus 50 ~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~ 128 (416)
+..+|++.+|+....-.-...+.+|++++|++. .++..||||..|+|+||.|+.+.+..+... +-.++.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 467899999999988888888889999999998 467999999999999999987766544322 223444433222
Q ss_pred HHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCceeeeeEeecC--CCHHHHHHHHHHHHHcCCCEEE
Q 014886 129 VFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQGFTTLK 206 (416)
Q Consensus 129 ~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~G~~~~K 206 (416)
+.+++...++.||+-.+.+-.-. .|. |...|+ .+|+++......+ .|-+.-|
T Consensus 79 -----------~~~PSVAFGlScA~aEl~~~Lp~-------~~n------Y~~APLC~GDPDeL~~~L~~m--pGeKvAK 132 (321)
T COG1441 79 -----------PQMPSVAFGLSCALAELKGTLPE-------AAN------YRVAPLCTGDPDELYLKLADM--PGEKVAK 132 (321)
T ss_pred -----------ccCchhHHHHHHHHHHHhhhchh-------hcC------cccccCcCCCHHHHHHHHhcC--Ccceeee
Confidence 23467788999999888763211 111 223333 5788876655544 7999999
Q ss_pred EecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh-CCCCceeeecCCCCCCHHHHHHhHHhhhcc
Q 014886 207 LKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 207 iKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~ 284 (416)
+||| ...-+|=..+..+.++.||..|++|||.+|++..|..|++...+ +.-.+.|+||||...+ .-++++ +.
T Consensus 133 vKVGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~a--eSr~Fa----~e 206 (321)
T COG1441 133 VKVGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRA--ESRAFA----RE 206 (321)
T ss_pred eeeeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChH--HHHHHH----Hh
Confidence 9999 34456777788888999999999999999999999999998864 3223469999998642 234443 47
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
++|.||.|||+... ||..--+ ..+..+++|++.+| +..+.+.++.|+++|+..++++.+||++|+...+.+|+-+
T Consensus 207 TgIAIAWDEs~rea-dF~~e~e-~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~l 282 (321)
T COG1441 207 TGIAIAWDESLREA-DFAFEAE-PGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAWL 282 (321)
T ss_pred cCeeEeecchhccc-ccccccC-CCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHHh
Confidence 99999999998874 4543333 34789999999999 8899999999999999999999999999999999998853
No 38
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.90 E-value=5.7e-23 Score=173.08 Aligned_cols=115 Identities=30% Similarity=0.509 Sum_probs=99.5
Q ss_pred eEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCCccCcccHHHHHHHHHH-HHHHHhCCCCCCHH
Q 014886 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (416)
Q Consensus 49 ~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (416)
.+|+++++.+|++ ||++|.++.+.++.++|||+|++|++||||+.+.+. +.+.. ...+.+ +.|.++|+++.+++
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~~~---~~~~~~~l~~~l~g~~~~~~~ 76 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAETV---ASALEDYLAPLLIGQDPDDIE 76 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHHHH---HHHHHHTHHHHHTTSBTTGHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhHHH---HHHHHHHHHHHHhcCCHHHHH
Confidence 5788999999999 999999999999999999999999999999998654 23332 233344 78999999999999
Q ss_pred HHHHHHHhhCCCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 014886 128 SVFGVVAGLLPGHQFASVRAAVEMALIDAVAKSVSMPLWRLFG 170 (416)
Q Consensus 128 ~~~~~l~~~~~g~~~~~a~said~ALwDl~gk~~g~pl~~LLG 170 (416)
.+++.+.+...++ ..|++||||||||++||..|+|+|+|||
T Consensus 77 ~~~~~~~~~~~~~--~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 77 DIWQELYRLIKGN--PAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHTSSH--HHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHhccch--HHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999998766553 5689999999999999999999999998
No 39
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.87 E-value=3e-22 Score=167.02 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=95.6
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceecCc
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD 370 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e~~ 370 (416)
||+++++++++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ +++++.++++|++++++++.+.|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999888887
Q ss_pred CCcccccCCCCc---ceeEeCcEEEcCC-CCCcccc
Q 014886 371 TPLLLSEDPVLD---GYEVSGAVYKFTN-ARGHGGF 402 (416)
Q Consensus 371 ~p~~~~~d~~~~---~~~~~~G~~~~p~-~PGlGie 402 (416)
|+.. +|++.+ ++. +||++.+|+ +||||||
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 4332 556552 445 999999999 9999997
No 40
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.2e-14 Score=141.00 Aligned_cols=296 Identities=22% Similarity=0.326 Sum_probs=199.6
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC--C-------------ccCcccHHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--P-------------HVTAEDQQTAMVKA 111 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~--~-------------~~~~e~~~~~~~~~ 111 (416)
+|++|..+.+ -.|+|. .+|=|+|+|++|..|.+-++.- . .|.+..+..++..+
T Consensus 3 ~I~~i~aReI--------lDSRGn----pTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nV 70 (423)
T COG0148 3 AIEDVIAREI--------LDSRGN----PTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANV 70 (423)
T ss_pred ccceeEEEEE--------EcCCCC----ceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHH
Confidence 5777776664 233333 6788999999999988754421 0 12223445566666
Q ss_pred HH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-c--eeeeeEeec
Q 014886 112 SE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGVS-N--TITTDITIP 183 (416)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~~-~--~v~~~~~~~ 183 (416)
+. ++|.|+|.+..+...+-+.|...- .++..+.++-|+.||.--+.+..+|+|||++|||.. . ++|....+.
T Consensus 71 n~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~Nvin 150 (423)
T COG0148 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVIN 150 (423)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeec
Confidence 64 789999999999887777775532 122235678999999999999999999999999963 2 444433222
Q ss_pred C-----CC---------H---HHHH----------HHHHHH-HHcCCCEEEEecC------CCh---hHHHHH-HHHHHH
Q 014886 184 I-----VS---------P---AEAA----------ELASKY-RKQGFTTLKLKVG------KNL---KEDIEV-LRAIRA 225 (416)
Q Consensus 184 ~-----~~---------~---~~~~----------~~~~~~-~~~G~~~~KiKvG------~~~---~~d~~~-v~avr~ 225 (416)
. .. | ..+. ....++ .++|..+- +| +++ ++.++. ++++.+
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~---vGDEGgfAP~l~~~eeald~i~~Aie~ 227 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTG---VGDEGGFAPNLKSNEEALDILVEAIEE 227 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccCCcccCCCCCccHHHHHHHHHHHHH
Confidence 1 00 0 1111 111111 23444333 33 223 344554 456667
Q ss_pred hC--C--CcEEEEeCCC--------------CCCHHHHHHHHHHH-HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC
Q 014886 226 VH--P--DSSFILDANE--------------GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 226 ~g--~--~~~L~vDaN~--------------~w~~~~A~~~~~~L-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
++ + ++.|.+|+.. .++.++-+++...| ++|++ ..||+|+..+||+++++|.+.+ ...
T Consensus 228 agy~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~--g~k 303 (423)
T COG0148 228 AGYEPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRL--GDK 303 (423)
T ss_pred hCCCCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhh--CCe
Confidence 64 3 4788899742 34555666655554 78885 6899999999999999998632 123
Q ss_pred CeEEeCCC-CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 287 VSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 287 iPIa~dEs-~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
+-|..|.- ++++.-+++-++.|+++.+-+|+..+| +++++..+.+|+.+|+..++++.. ||. -...+|||.++..
T Consensus 304 vqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETe--D~tIAdLAVa~~a 381 (423)
T COG0148 304 VQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETE--DTTIADLAVATNA 381 (423)
T ss_pred EEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCcc--cchHHHHHHHhCC
Confidence 67777755 678888999999999999999999999 999999999999999999887643 333 2345577776643
No 41
>PRK08350 hypothetical protein; Provisional
Probab=99.72 E-value=1.9e-15 Score=145.46 Aligned_cols=281 Identities=15% Similarity=0.180 Sum_probs=193.8
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccCC---ccCcccHHHHHHHHHH-HHHHHhCCC
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---HVTAEDQQTAMVKASE-ACEVLKESP 122 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~~---~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (416)
+|++|..+.+ -.|+|. ++|=|+|+|++| .|.+-++... .|. ..+..++..++. ++|.|+|.+
T Consensus 3 ~I~~i~aReI--------lDSRGn----PTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVA--------VLRGGK----YSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEE--------EcCCCC----ceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 6888887765 234443 678889999999 7777766521 233 335556666664 799999999
Q ss_pred CCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-Ccee--eeeEeecCCC------HHH
Q 014886 123 AMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTI--TTDITIPIVS------PAE 189 (416)
Q Consensus 123 ~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~-~~~v--~~~~~~~~~~------~~~ 189 (416)
+.+...+-+.|-..- .+...+.|+-|+.||..-+.+...|+|||++|||. ...+ |....+...+ |.+
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 998888877775421 11222467899999999999999999999999884 3333 3332232221 222
Q ss_pred HHHHHHHHHHcCCCEEEEecCCChhHHHHH-HHHHHHhC--C--CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec
Q 014886 190 AAELASKYRKQGFTTLKLKVGKNLKEDIEV-LRAIRAVH--P--DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~-v~avr~~g--~--~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (416)
..+-+ .=|..+|=-+-.+.++-++. ++++.++| + ++.+.+|+...++.++-+ +.+++|++ .+||
T Consensus 149 a~~~~-----ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE- 217 (341)
T PRK08350 149 LMEIT-----DVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK- 217 (341)
T ss_pred hhhhH-----HHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-
Confidence 11111 11222321111245666665 55666665 2 588999998557887765 77889986 6999
Q ss_pred CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc
Q 014886 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~ 343 (416)
|+..+ ++++++++ +...+.|..|.-..|-... +.++++.+-+|+..+| ++++++.+.+|+++|..+++++
T Consensus 218 p~~E~--~gw~~lt~---~g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSH 288 (341)
T PRK08350 218 PIGDE--ELFLELIA---GTHGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAE 288 (341)
T ss_pred cCCcc--hHHHHHHh---cCCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeec
Confidence 99855 99999986 2346888888776655433 7899999999999999 9999999999999999998876
Q ss_pred CC-chHHHHHHHHHHHccCCC
Q 014886 344 MV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 344 ~~-es~ig~~a~~hlaaa~~~ 363 (416)
.. ||. -...+|||.++..
T Consensus 289 RSGETe--D~~IAdLaVa~~a 307 (341)
T PRK08350 289 AKYESA--DEALPHLAVGLRC 307 (341)
T ss_pred CCCCCc--chhHHHHHHHhCC
Confidence 43 332 3456677777643
No 42
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.67 E-value=2.5e-16 Score=119.10 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=61.0
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 219 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 219 ~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
||++||++ ||++.|++|+|++||.++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999998 99999999999999999999999999996 39999999999999999975 789999987
No 43
>PTZ00378 hypothetical protein; Provisional
Probab=99.58 E-value=8.2e-13 Score=133.89 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=190.6
Q ss_pred eeEEEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCce-----EEEEeccCC------cc-CcccHHHHHHHH
Q 014886 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV-----GWGEAPVLP------HV-TAEDQQTAMVKA 111 (416)
Q Consensus 44 ~~mkI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~-----G~GE~~~~~------~~-~~e~~~~~~~~~ 111 (416)
..+.|++|..+.+- .|+|. +.|=|+|++++|.. -.||+..+. +| .+..+..++.
T Consensus 47 ~~~~I~~i~areIl--------DSrGn----PTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~-- 112 (518)
T PTZ00378 47 SGDEIRALVHNEVL--------SPAGE----TVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ-- 112 (518)
T ss_pred CCCeeeEEEEEEEE--------cCCCC----eeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--
Confidence 34668888877752 33332 56777888988843 011443221 12 2233434443
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC--------Cceeeee
Q 014886 112 SEACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGGV--------SNTITTD 179 (416)
Q Consensus 112 ~~~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg~--------~~~v~~~ 179 (416)
+.+.|.|+|.++.+...+-+.|.... ..+..++++-|+.||..-+.|+..++|||++||+. ...+|+.
T Consensus 113 ~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P 192 (518)
T PTZ00378 113 NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQL 192 (518)
T ss_pred hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCcc
Confidence 45899999999999877777665432 12223568999999999999999999999999873 1223322
Q ss_pred --Ee------------------ecC----CCHHHHHHHH-H--HHHHcCCCEEEEecC-------C---ChhHHHHH-HH
Q 014886 180 --IT------------------IPI----VSPAEAAELA-S--KYRKQGFTTLKLKVG-------K---NLKEDIEV-LR 221 (416)
Q Consensus 180 --~~------------------~~~----~~~~~~~~~~-~--~~~~~G~~~~KiKvG-------~---~~~~d~~~-v~ 221 (416)
.. +|. .+..+..+.. + ..+..|+. .-+| + +.++-++. .+
T Consensus 193 ~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~e 269 (518)
T PTZ00378 193 CITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATE 269 (518)
T ss_pred ceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHH
Confidence 11 111 1222211111 1 11112322 1222 1 23455554 44
Q ss_pred HHHHhC--C--CcEEEEeCCC--C--------------------------------CCHHHHHHHHHHH-HhCC--CCce
Q 014886 222 AIRAVH--P--DSSFILDANE--G--------------------------------YKPQEAVEVLEKL-YEMG--VTPV 260 (416)
Q Consensus 222 avr~~g--~--~~~L~vDaN~--~--------------------------------w~~~~A~~~~~~L-~~~~--l~~~ 260 (416)
+++++| | ++.|.+|+-. - .|.+|-+++.+.| ++|+ + .
T Consensus 270 Ai~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--v 347 (518)
T PTZ00378 270 ALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--V 347 (518)
T ss_pred HHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--E
Confidence 566664 3 4677777421 1 3456666655544 6786 4 5
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCC--HHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCC
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS--LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~--~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi 337 (416)
+||+|+..+||+++++|++.+ ...+-|..|.-..| +.-+++.++.++++.+.+|++.+| ++++++.+.+|+++|.
T Consensus 348 sIEDp~~E~D~~gw~~lt~~l--G~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~ 425 (518)
T PTZ00378 348 YVEDTHCDEDTFGLQRLQAAL--GDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEG 425 (518)
T ss_pred EEecCCCchHHHHHHHHHHHh--CCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCC
Confidence 899999999999999998743 23578888865444 888999999999999999999999 9999999999999999
Q ss_pred cEE---EccCCchHHHHHHHHHHHccCC
Q 014886 338 NLM---IGGMVETRLAMGFAGHLSAGLG 362 (416)
Q Consensus 338 ~~~---~~~~~es~ig~~a~~hlaaa~~ 362 (416)
.++ +++. |+ .-...+|||.++.
T Consensus 426 ~~v~v~vShR--SG-eD~~IAdLAVa~g 450 (518)
T PTZ00378 426 RAVTVLVQTL--AG-NAATAAHLAVAMG 450 (518)
T ss_pred cEEccccCCC--cC-CccHHHHHHHHcC
Confidence 987 6553 22 3556778887764
No 44
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.42 E-value=9.5e-12 Score=116.14 Aligned_cols=287 Identities=16% Similarity=0.198 Sum_probs=183.2
Q ss_pred eeEEEEEEEECCCceEEEEeccCC--ccCc-ccH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhCCCChh-hHH
Q 014886 74 VENVAIRIELSNGCVGWGEAPVLP--HVTA-EDQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQF-ASV 145 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~~--~~~~-e~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~-~~a 145 (416)
.+.+-|.+...+|.+=||.|...- +..+ +.+ +.....++ .+.|.|+|+|....-...+-+..+..++.. .+.
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQYSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~LhtAv 129 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLLHTAV 129 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcchHHH
Confidence 357778888889999999987531 1111 111 12222333 368999999876544333223333333332 357
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHh----CCC--CceeeeeEeecCC---CHHHHHHHHHHHHHcC-CCEEEEecCCChh-
Q 014886 146 RAAVEMALIDAVAKSVSMPLWRLF----GGV--SNTITTDITIPIV---SPAEAAELASKYRKQG-FTTLKLKVGKNLK- 214 (416)
Q Consensus 146 ~said~ALwDl~gk~~g~pl~~LL----Gg~--~~~v~~~~~~~~~---~~~~~~~~~~~~~~~G-~~~~KiKvG~~~~- 214 (416)
+.++..||.|+.+-+.+.--.+.+ +-. .++||+|...+.. ..+.|.-..-..+..| ++.+. ++|.+-+
T Consensus 130 rYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve-~~G~dG~~ 208 (410)
T COG3799 130 RYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVE-ELGFDGEK 208 (410)
T ss_pred HhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHH-HhCCchHH
Confidence 889999999999877765443332 222 2356655433221 1122211111111122 11111 2333322
Q ss_pred ------HHHHHHHHHHHhCCCcEEEEeCCCC------CCHHHHHHHHHHHHhC--CCCceeeecCCCCC----CHHHHHH
Q 014886 215 ------EDIEVLRAIRAVHPDSSFILDANEG------YKPQEAVEVLEKLYEM--GVTPVLFEQPVHRD----DWEGLGH 276 (416)
Q Consensus 215 ------~d~~~v~avr~~g~~~~L~vDaN~~------w~~~~A~~~~~~L~~~--~l~~~~iEeP~~~~----d~~~~~~ 276 (416)
|-.+|+..++--+..-.|-+|..+. +++.....++..|++. ++ +.+||-|.... +++.+++
T Consensus 209 l~Eyv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~~a~ 287 (410)
T COG3799 209 LREYVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRLLAA 287 (410)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHHHHH
Confidence 3333333322223345789998864 5676667788888642 33 35999999753 4666666
Q ss_pred hHHhh-hccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc-CCchHHHHHH
Q 014886 277 VSHIA-KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAMGF 353 (416)
Q Consensus 277 l~~~~-r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~-~~es~ig~~a 353 (416)
++..+ +..+++.|.+||.|.+.+|+..+.++++++++|+|..-+| +.+..+.+.+|+.+.+..+.|+ +.||.++...
T Consensus 288 i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvSAr~ 367 (410)
T COG3799 288 ITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVSART 367 (410)
T ss_pred HHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchhhhh
Confidence 66532 3467899999999999999999999999999999999999 9999999999999999988866 5699999999
Q ss_pred HHHHHccCC
Q 014886 354 AGHLSAGLG 362 (416)
Q Consensus 354 ~~hlaaa~~ 362 (416)
++|++.+..
T Consensus 368 cvHValAt~ 376 (410)
T COG3799 368 CVHVALATR 376 (410)
T ss_pred hhhhhhhhc
Confidence 999987653
No 45
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.30 E-value=4.9e-11 Score=107.80 Aligned_cols=162 Identities=19% Similarity=0.355 Sum_probs=107.3
Q ss_pred cC-CCEEEEecCCChhHHHHHHHHHH----HhC-C--CcEEEEeCCCCC------CHHHHHHHHHHHHh--CCCCceeee
Q 014886 200 QG-FTTLKLKVGKNLKEDIEVLRAIR----AVH-P--DSSFILDANEGY------KPQEAVEVLEKLYE--MGVTPVLFE 263 (416)
Q Consensus 200 ~G-~~~~KiKvG~~~~~d~~~v~avr----~~g-~--~~~L~vDaN~~w------~~~~A~~~~~~L~~--~~l~~~~iE 263 (416)
+| |..+. |+|.+-+.=.+.|+=++ +.+ + .-.|-+|..+.. +++....++..|++ .++. ..||
T Consensus 33 H~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~~-L~iE 110 (248)
T PF07476_consen 33 HALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPFK-LRIE 110 (248)
T ss_dssp ETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS--EEEE
T ss_pred hHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCCe-eeee
Confidence 45 77888 99965444444433333 222 3 357899998743 57777778877764 2332 4999
Q ss_pred cCCCCCC----HHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCC
Q 014886 264 QPVHRDD----WEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 337 (416)
Q Consensus 264 eP~~~~d----~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi 337 (416)
.|+...+ ++.++.|++.++ +.+++.|.+||.|.|++|++.+.+++++|++|+|..-+| +..+.+..-+|+++|+
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGV 190 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCC
Confidence 9998654 566777776544 467899999999999999999999999999999999998 9999999999999999
Q ss_pred cEEEcc-CCchHHHHHHHHHHHccCCC
Q 014886 338 NLMIGG-MVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 338 ~~~~~~-~~es~ig~~a~~hlaaa~~~ 363 (416)
..+.|+ +.||..+...++|+|.|...
T Consensus 191 gaY~GGtCNETd~SArv~~hvalAt~p 217 (248)
T PF07476_consen 191 GAYLGGTCNETDRSARVCVHVALATRP 217 (248)
T ss_dssp EEEE---TTS-HHHHHHHHHHHHHCT-
T ss_pred ceeecccccccchhHHHHHHHHHhcCH
Confidence 999876 55999999999999987653
No 46
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.4e-09 Score=103.14 Aligned_cols=279 Identities=18% Similarity=0.255 Sum_probs=177.0
Q ss_pred eEEEEEEEECCCce----------EEEEeccC-----CccCcccHHHHHHHHHH-HHHHHhCC--CCCCHHHHHHHHHhh
Q 014886 75 ENVAIRIELSNGCV----------GWGEAPVL-----PHVTAEDQQTAMVKASE-ACEVLKES--PAMALGSVFGVVAGL 136 (416)
Q Consensus 75 ~~~iV~v~t~~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~~-~~~~l~g~--~~~~~~~~~~~l~~~ 136 (416)
++|-|.++|+.|+. |.=|+-.+ ..|.+..+..++..+++ +.|.|++. ++.+...+-+.|..+
T Consensus 18 PTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~L 97 (433)
T KOG2670|consen 18 PTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIEL 97 (433)
T ss_pred CceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHHHhc
Confidence 56778888887732 33332211 12334455666666664 78999987 666666666666432
Q ss_pred C----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC---CCc----eeeeeEeecCC--------------------
Q 014886 137 L----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLFGG---VSN----TITTDITIPIV-------------------- 185 (416)
Q Consensus 137 ~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LLGg---~~~----~v~~~~~~~~~-------------------- 185 (416)
- .....+.|+-|+.+|..-+-+-..|+|||+.+.. ..+ +||.+..+...
T Consensus 98 DGTeNKsklGaNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ga~ 177 (433)
T KOG2670|consen 98 DGTENKSKLGANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPVGAD 177 (433)
T ss_pred cCCcccccccchhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccchhhhhhheecccCch
Confidence 1 1112246899999999999999999999988753 222 23333222111
Q ss_pred CHHHH-------HHHHHHHHHcCCCEEEEecC------CCh---hHHHHH-HHHHHHhC--CCcEEEEeCCC--------
Q 014886 186 SPAEA-------AELASKYRKQGFTTLKLKVG------KNL---KEDIEV-LRAIRAVH--PDSSFILDANE-------- 238 (416)
Q Consensus 186 ~~~~~-------~~~~~~~~~~G~~~~KiKvG------~~~---~~d~~~-v~avr~~g--~~~~L~vDaN~-------- 238 (416)
+-++. -...+.....-|..---.|| +++ ++-++. +++++++| .+++|-+|...
T Consensus 178 sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~dgk 257 (433)
T KOG2670|consen 178 SFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYKDGK 257 (433)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhcCCc
Confidence 00110 11111112222222223343 233 445554 34566664 46888888531
Q ss_pred -------------C-CCHHHHHH-HHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHH
Q 014886 239 -------------G-YKPQEAVE-VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVK 302 (416)
Q Consensus 239 -------------~-w~~~~A~~-~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~ 302 (416)
. ++.++..+ +-.-+.+|++ .-||+|+..+||+.+..+.. ..++.|..|. .++++..+.
T Consensus 258 YDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw~~w~~~~~----~~~iqiVgDDLtvTnpkri~ 331 (433)
T KOG2670|consen 258 YDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDWEAWSKFFK----EVGIQIVGDDLTVTNPKRIA 331 (433)
T ss_pred ccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhHHHHHHHhh----ccceEEecCcccccCHHHHH
Confidence 2 24555444 4444578886 69999999999999998764 5789998775 588899999
Q ss_pred HHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccC
Q 014886 303 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGL 361 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~ 361 (416)
++++..+|+.+-+|+..+| ++++++.+.+|++.|..+|++... ||. -.+.++|..++
T Consensus 332 ~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETe--DtFIaDL~VGl 390 (433)
T KOG2670|consen 332 TAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETE--DTFIADLVVGL 390 (433)
T ss_pred HHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCcc--cchHHHhhhhh
Confidence 9999999999999999999 999999999999999999987643 332 22344554444
No 47
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.08 E-value=2e-09 Score=106.99 Aligned_cols=121 Identities=22% Similarity=0.369 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC------------ChhH-------------HHHHHHHHHHh-CCCcEEEEeCC-----
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK------------NLKE-------------DIEVLRAIRAV-HPDSSFILDAN----- 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~------------~~~~-------------d~~~v~avr~~-g~~~~L~vDaN----- 237 (416)
++.+.++.+.+.||..|+|+.+. +... ..+.|++||+. |+++.|.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34666777888999999999852 2223 38899999997 78999999955
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCceeee-----------cCC-CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-----------eP~-~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
++|+.++++++++.|+++++. ||| .|+ +..+.+.++++++ .+++||+.++.+.+++++.++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVD--LIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 899999999999999999874 999 466 3345566666653 678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.+.+|+|++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99999999854
No 48
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.06 E-value=7.3e-09 Score=97.26 Aligned_cols=142 Identities=21% Similarity=0.310 Sum_probs=118.0
Q ss_pred HHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCc
Q 014886 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDS 230 (416)
Q Consensus 167 ~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~ 230 (416)
.+++......|+..++...+++++.+.++.+.+.||..++|++|. +++...+.++++|+..+ .
T Consensus 46 ~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~ 124 (231)
T cd02801 46 RLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-I 124 (231)
T ss_pred HhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-C
Confidence 344444556777888888899999999988888899999999873 56677888999998744 7
Q ss_pred EEEEeCCCCCCHH-HHHHHHHHHHhCCCCceee-------ec-CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH
Q 014886 231 SFILDANEGYKPQ-EAVEVLEKLYEMGVTPVLF-------EQ-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (416)
Q Consensus 231 ~L~vDaN~~w~~~-~A~~~~~~L~~~~l~~~~i-------Ee-P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~ 301 (416)
.+.++.|.+|+.+ ++.++++.|++.++. +| ++ +..+.+++..+++++ ..++||.++..+.+.+++
T Consensus 125 ~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 125 PVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLEDA 198 (231)
T ss_pred CEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHHH
Confidence 8899999999876 899999999999875 78 76 666667877777764 678999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 014886 302 KKIVKGNLADVINI 315 (416)
Q Consensus 302 ~~~i~~~a~d~v~~ 315 (416)
.++++.+.+|.+++
T Consensus 199 ~~~l~~~gad~V~i 212 (231)
T cd02801 199 LRCLEQTGVDGVMI 212 (231)
T ss_pred HHHHHhcCCCEEEE
Confidence 99999877899876
No 49
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=98.84 E-value=3e-08 Score=95.94 Aligned_cols=166 Identities=19% Similarity=0.376 Sum_probs=108.4
Q ss_pred cCCCHHHHHHHHHHH-HHcCCCEEEEecCCChhHHHHHHHHHHHhC--CCcEEEEeCCC-------CCCHHHHHHHHHH-
Q 014886 183 PIVSPAEAAELASKY-RKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE-------GYKPQEAVEVLEK- 251 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~~G~~~~KiKvG~~~~~d~~~v~avr~~g--~~~~L~vDaN~-------~w~~~~A~~~~~~- 251 (416)
++.++++..+.+.++ .+.||+. +|+++-|+... +-+ .+-+..++... ..|.++-+++...
T Consensus 75 ~~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAs--------efyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~l 145 (295)
T PF00113_consen 75 NIDDNEEALDLLMEAIKEAGYEP-DVAIALDVAAS--------EFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDL 145 (295)
T ss_dssp SBSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GG--------GGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHccccc-eeeeeccccHH--------HhhhccCCeEEEeecccccccccccCHHHHHHHHHHH
Confidence 345677766665555 3478877 77776432111 112 12344444433 3578887775555
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~ 329 (416)
+++|++ ..||+|+..+||+++++|++.+. -.+-|..|. .++++..+.+.++.++++.+.+|+..+| ++++++++
T Consensus 146 i~~YPI--vsIEDpf~edD~e~w~~lt~~~g--~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~lea~ 221 (295)
T PF00113_consen 146 IKKYPI--VSIEDPFDEDDWEGWAKLTKRLG--DKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETLEAV 221 (295)
T ss_dssp HHHS-E--EEEESSS-TT-HHHHHHHHHHHT--TTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHHHHH
T ss_pred HHhcCe--EEEEccccccchHHHHHHHHhhh--cceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHHHHH
Confidence 478985 69999999999999999987432 238888886 4677888999999999999999999999 99999999
Q ss_pred HHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCC
Q 014886 330 EVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~ 363 (416)
.+|+++|..+++++.. || .-...+|||.++..
T Consensus 222 ~~a~~~g~~~vvS~rsgEt--eD~~iadLaVg~~a 254 (295)
T PF00113_consen 222 KLAKSAGWGVVVSHRSGET--EDTFIADLAVGLGA 254 (295)
T ss_dssp HHHHHTT-EEEEE--SS----S--HHHHHHHHTT-
T ss_pred HHHHHCCceeeccCCCCCc--CchhHHHHHhccCc
Confidence 9999999999987754 33 23466788887754
No 50
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.81 E-value=1.1e-07 Score=94.56 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------------------C----hhHHHHHHHHHHHh-CCCcEEEEeCC-----
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFILDAN----- 237 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~---------------------~----~~~d~~~v~avr~~-g~~~~L~vDaN----- 237 (416)
+..+.++++.+.||..|-|..+. + ++-.++.|++||++ ++++.|.+|.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34666777788999999998761 1 23456789999997 78999999998
Q ss_pred -CCCCHHHHHHHHHHHHhCCCCceeee-------cCCCC---C----C-----HHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 238 -EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR---D----D-----WEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~~---~----d-----~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
++|+.++++++++.|++.++. ||| +|... + + ++..++++ +++++||++++.+.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t 303 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVD--LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRT 303 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCC
Confidence 689999999999999999874 998 66532 1 0 23334444 478999999999999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
++++.++++.+.+|+|.+
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999999999865
No 51
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.68 E-value=3.8e-07 Score=90.25 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=94.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCC------------Ch-------------hHHHHHHHHHHHh-CCCcEEEEeCC------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK------------NL-------------KEDIEVLRAIRAV-HPDSSFILDAN------ 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~------------~~-------------~~d~~~v~avr~~-g~~~~L~vDaN------ 237 (416)
..+.++.+.+.||..|+|+.+. +. +...+.|++||+. ++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 4556677788999999999861 11 2237889999997 78888988887
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeee-------cCCC---------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~ 301 (416)
++|+.++++++++.|++.++. ||+ +|.. ..+++..++++ +.+++||++.+.+.+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir----~~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIK----KAVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHH----HHCCCCEEEeCCCCCHHHH
Confidence 458999999999999999974 884 6543 23344455554 3678999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 014886 302 KKIVKGNLADVINI 315 (416)
Q Consensus 302 ~~~i~~~a~d~v~~ 315 (416)
.++++.+.+|++.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999988999865
No 52
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.62 E-value=6.4e-07 Score=89.71 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCCEEEEecC----------C-----------C----hhHHHHHHHHHHHh-CCCcEEE-----EeCC-
Q 014886 190 AAELASKYRKQGFTTLKLKVG----------K-----------N----LKEDIEVLRAIRAV-HPDSSFI-----LDAN- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG----------~-----------~----~~~d~~~v~avr~~-g~~~~L~-----vDaN- 237 (416)
..+.|+.+.+.||..|+|+.+ + + .+...+.|++||++ ++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 455667778899999999873 1 1 35567889999997 7776664 5654
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-----ceeeecCCCCCC--------HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVT-----PVLFEQPVHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP~~~~d--------~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
++|+.++++++++.|+++++. ..|.|+|++..+ .+..++++ +.+++||+.++.+.+++++.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 668999999999999998742 125688876431 22334454 4789999999999999999999
Q ss_pred HHcCCCCEEEe
Q 014886 305 VKGNLADVINI 315 (416)
Q Consensus 305 i~~~a~d~v~~ 315 (416)
++.+.+|++++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999855
No 53
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=98.17 E-value=6.8e-05 Score=64.15 Aligned_cols=111 Identities=19% Similarity=0.225 Sum_probs=76.5
Q ss_pred EEeEEEEEEEEeccccceeecCceeeeeeEEEEEEEECCCceEEEEeccC----------------CccCcccHHHHHHH
Q 014886 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL----------------PHVTAEDQQTAMVK 110 (416)
Q Consensus 47 kI~~v~~~~~~~pl~~pf~~a~~~~~~~~~~iV~v~t~~G~~G~GE~~~~----------------~~~~~e~~~~~~~~ 110 (416)
+|++|..+.+ -.++|. .++=|+|.+++|..|.+-++.. ..|.+..+..++..
T Consensus 1 ~I~~v~~r~I--------lDsrG~----PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~ 68 (132)
T PF03952_consen 1 TITKVKAREI--------LDSRGN----PTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVEN 68 (132)
T ss_dssp BEEEEEEEEE--------E-TTS-----EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHH
T ss_pred CeEEEEEEEE--------EcCCCC----ceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhh
Confidence 4677776664 234443 6888999999998888877542 11233456677777
Q ss_pred HHH-HHHHHhCCCCCCHHHHHHHHHhhC----CCChhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 014886 111 ASE-ACEVLKESPAMALGSVFGVVAGLL----PGHQFASVRAAVEMALIDAVAKSVSMPLWRLF 169 (416)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~----~g~~~~~a~said~ALwDl~gk~~g~pl~~LL 169 (416)
++. +.|.|+|.++.+...+-+.|...- ..+..+.+.-|+.+|++-+.++..|+|||++|
T Consensus 69 vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 69 VNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 765 789999999999888877775432 11222467899999999999999999999976
No 54
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.53 E-value=0.0053 Score=60.41 Aligned_cols=139 Identities=15% Similarity=0.198 Sum_probs=101.9
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC-CCcEEEEeCCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH-PDSSFILDANE 238 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g-~~~~L~vDaN~ 238 (416)
.|+...+...+|+++.+.++.+.+.||..+-|.+|. +++.-.+.++++|+.. +++.+.|=-.-
T Consensus 63 ~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~ 142 (312)
T PRK10550 63 TLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRL 142 (312)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEEC
Confidence 455567777899999998888888999999999872 3445566678888874 45666666555
Q ss_pred CCC-HHHHHHHHHHHHhCCCCce-----eeecCCCC--CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 239 GYK-PQEAVEVLEKLYEMGVTPV-----LFEQPVHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 239 ~w~-~~~A~~~~~~L~~~~l~~~-----~iEeP~~~--~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
+|+ .+++.++++.+++.|+... .-+|-... -|++..+++++ +.++||.+.=.+.+.+++.++++.+.+
T Consensus 143 g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 143 GWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 775 4568899999999776421 12332221 25666677654 678999999999999999999988889
Q ss_pred CEEEeCCC
Q 014886 311 DVINIKLA 318 (416)
Q Consensus 311 d~v~~k~~ 318 (416)
|.|.+=-+
T Consensus 219 DgVmiGRg 226 (312)
T PRK10550 219 DAVMIGRG 226 (312)
T ss_pred CEEEEcHH
Confidence 99987433
No 55
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.23 E-value=0.012 Score=58.11 Aligned_cols=137 Identities=17% Similarity=0.242 Sum_probs=98.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
++...+...+|+++.+.++...+.||..+-+.+|- +++.-.+.++++|+.. ++.+.+=-+.+|
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~ 144 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGW 144 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccc
Confidence 33456667799999888887778899999999882 3555666677888763 334444444667
Q ss_pred CH--HHHHHHHHHHHhCCCCceee-------ecCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 241 KP--QEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 241 ~~--~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
+. .++.++++.+++.|+. +| +|-.. ..+++..+++++ ++++||.+.=.+.+.+++.++++...+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~ga 218 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTGA 218 (321)
T ss_pred cCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccCC
Confidence 54 3678999999998864 55 33322 245666666653 678999999999999999999987678
Q ss_pred CEEEeCCCCC
Q 014886 311 DVINIKLAKV 320 (416)
Q Consensus 311 d~v~~k~~k~ 320 (416)
|++++=-+-+
T Consensus 219 dgVmiGR~~l 228 (321)
T PRK10415 219 DALMIGRAAQ 228 (321)
T ss_pred CEEEEChHhh
Confidence 9998854333
No 56
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.16 E-value=0.0044 Score=53.55 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=61.4
Q ss_pred eeEEEEEEEECCCceEEEEeccC--CccCc-ccH---HHHHHHHH-HHHHHHhCCCCCCHHHHHHHHHhhCCCCh-hhHH
Q 014886 74 VENVAIRIELSNGCVGWGEAPVL--PHVTA-EDQ---QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQ-FASV 145 (416)
Q Consensus 74 ~~~~iV~v~t~~G~~G~GE~~~~--~~~~~-e~~---~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~-~~~a 145 (416)
-+.+.|-+..+||.+.||.|... .+..+ +.+ ...+..++ .+.|.|+|++.....++.+.+.....|.. ..+.
T Consensus 50 gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d~~~~g~rlhtAi 129 (159)
T PF05034_consen 50 GESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFDELVDGKRLHTAI 129 (159)
T ss_dssp EEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHHH-ETTEE--HHH
T ss_pred CcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHHhcccCCcchhHH
Confidence 46888999999999999999863 11111 211 22223333 47899999999998888887776654432 2467
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHh
Q 014886 146 RAAVEMALIDAVAKSVSMPLWRLF 169 (416)
Q Consensus 146 ~said~ALwDl~gk~~g~pl~~LL 169 (416)
+-+|..||+|+.+|..+.-..+.+
T Consensus 130 RYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 130 RYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp HHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred HHhHHHHHHHHHHHHcCCcHHHHH
Confidence 899999999999999987665544
No 57
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.018 Score=56.98 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=108.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+..-+...+|+.+.+.++...+.||..|-|.+| .+++.-.+.|++++++.+++.+.|=-.-+|
T Consensus 68 p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~ 147 (323)
T COG0042 68 PVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGW 147 (323)
T ss_pred CEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEeccc
Confidence 4455667788988888888888999999999998 256777788999999855788888888899
Q ss_pred CHHH--HHHHHHHHHhCCCCceee---------ecCCCCCCHHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcC
Q 014886 241 KPQE--AVEVLEKLYEMGVTPVLF---------EQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 241 ~~~~--A~~~~~~L~~~~l~~~~i---------EeP~~~~d~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
+..+ +..+++.+++.++...++ ..| -||+..+++++ ..+ +||.+.-.+.+.++.++.++..
T Consensus 148 d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~---ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 148 DDDDILALEIARILEDAGADALTVHGRTRAQGYLGP---ADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred CcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCc---cCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHHhh
Confidence 7665 778899998877642222 233 46888888875 455 9999999999999999999988
Q ss_pred CCCEEEeCCCCCc
Q 014886 309 LADVINIKLAKVG 321 (416)
Q Consensus 309 a~d~v~~k~~k~G 321 (416)
.+|.+.+--+-.|
T Consensus 221 g~DgVMigRga~~ 233 (323)
T COG0042 221 GADGVMIGRGALG 233 (323)
T ss_pred CCCEEEEcHHHcc
Confidence 8999988544444
No 58
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.94 E-value=0.018 Score=55.85 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=95.6
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-----------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
.|+..++...+++++.+.++.+.+.|+..+-+.++. +++.-.+.+++||+.. ++.+.+..+..++.++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLED 177 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHH
Confidence 355566766788888888888888899999998871 2233445678888764 6778888888899999
Q ss_pred HHHHHHHHHhCCCCceeeecC---------------CCCC-------------CHHHHHHhHHhhhccC--CCeEEeCCC
Q 014886 245 AVEVLEKLYEMGVTPVLFEQP---------------VHRD-------------DWEGLGHVSHIAKDKF--GVSVAADES 294 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP---------------~~~~-------------d~~~~~~l~~~~r~~~--~iPIa~dEs 294 (416)
..++++.+++.++. +|.=+ .... .++..++++ +.. ++||.+.=-
T Consensus 178 ~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~GG 251 (289)
T cd02810 178 IVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVGG 251 (289)
T ss_pred HHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEECC
Confidence 99999999998764 55521 0000 122223333 355 799999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 014886 295 CRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.+.+++.+++..| +|.+++
T Consensus 252 I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 252 IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCHHHHHHHHHcC-ccHheE
Confidence 99999999999988 788765
No 59
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.83 E-value=0.043 Score=54.80 Aligned_cols=120 Identities=21% Similarity=0.322 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCc--EEEEeC----C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILDA----N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~--~L~vDa----N 237 (416)
..+.|+.+.+.||..+-|..+. +++ --++.|++||+. ++++ .+++-. .
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 4555677788999999999831 222 234678899997 6664 455554 3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCceeee-------cC------CCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 238 EGYKPQEAVEVLEKLYEMG-VTPVLFE-------QP------VHR------DDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~-l~~~~iE-------eP------~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
++++.++++++++.|++.+ +. ||+ ++ .++ .+++..++++ +..++||...=.+.+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~ 296 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRD 296 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCC
Confidence 4589999999999999986 54 554 11 111 1133333443 467899999888999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
+++..++++.+.+|.+.+
T Consensus 297 ~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 297 PAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999998999865
No 60
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.81 E-value=0.068 Score=50.24 Aligned_cols=131 Identities=14% Similarity=0.217 Sum_probs=93.2
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
++..++...+++++.+.++.. +.++..+-|.+|- +++.-.+.++++++. +..+.+=-.-.|
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC
Confidence 455677778999987776654 5689999988762 555566667777754 334444444445
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCC---CHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+..+..++++.+++.++...-+.+=.+.. +++.++++++ .. ++||.+.=.+.+.+|+.++++.| +|.+++
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~Vmv 219 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSV 219 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEE
Confidence 55667899999999887645666544322 4666666654 55 49999999999999999999976 688876
No 61
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.80 E-value=0.04 Score=55.83 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCEEEEec---CC-------------------Chh----HHHHHHHHHHHh-CCCcEEE--EeC-----
Q 014886 191 AELASKYRKQGFTTLKLKV---GK-------------------NLK----EDIEVLRAIRAV-HPDSSFI--LDA----- 236 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKv---G~-------------------~~~----~d~~~v~avr~~-g~~~~L~--vDa----- 236 (416)
.+.|+.+.+.||..|.|.. |. +++ --++.|++||++ ++++.+. +.+
T Consensus 153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~ 232 (382)
T cd02931 153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK 232 (382)
T ss_pred HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence 5556677789999999997 41 122 235678899987 6774433 322
Q ss_pred -------------CCCCCHHHHHHHHHHHHhCCCCceeeec-------CC---CCCC-HHH-HHHhHHhhhccCCCeEEe
Q 014886 237 -------------NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV---HRDD-WEG-LGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 237 -------------N~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P~---~~~d-~~~-~~~l~~~~r~~~~iPIa~ 291 (416)
+++++.++++++++.|++.++. ||+= +. ++.. ..+ +..+.+.+++..++||.+
T Consensus 233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~ 310 (382)
T cd02931 233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVIM 310 (382)
T ss_pred ccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEEE
Confidence 3478999999999999988764 5531 11 0000 000 111222233467899999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 292 DESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
-=.+.++++..++++.+.+|.|.+
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeee
Confidence 889999999999999999999855
No 62
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.78 E-value=0.1 Score=51.86 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=97.2
Q ss_pred HHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C
Q 014886 167 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P 228 (416)
Q Consensus 167 ~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~ 228 (416)
.++.-.....|+...+...+|+++.+.++.+.+.||..+-|.+|. +++.-.+.++++|+.. |
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 334333334456667778899999888888888899999988871 3445567788888852 3
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee--------cC--------CCCCCHHHHHHhHHhhhcc-CCCeEE
Q 014886 229 -DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QP--------VHRDDWEGLGHVSHIAKDK-FGVSVA 290 (416)
Q Consensus 229 -~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--------eP--------~~~~d~~~~~~l~~~~r~~-~~iPIa 290 (416)
.+++++-....-+.+++.++++.+++.|+. +|. |- +++-+++..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 344444322223467788999999988865 442 11 12345666666653 4 379999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 291 ADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 291 ~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+.=.+.+++|+.++++ + +|.+++=
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIG 233 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIG 233 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEc
Confidence 9888999999999987 4 8988773
No 63
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.76 E-value=0.018 Score=56.57 Aligned_cols=142 Identities=23% Similarity=0.362 Sum_probs=95.0
Q ss_pred HhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------CChhHHHHHHHHHHHhCCCcE
Q 014886 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSS 231 (416)
Q Consensus 168 LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------~~~~~d~~~v~avr~~g~~~~ 231 (416)
++......-|+..-+...+|+.+.+.++...+.||..|-|.+| .+++.-.+.|+++++..+ ..
T Consensus 46 ~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~p 124 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IP 124 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SE
T ss_pred cccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cc
Confidence 3333333345556677788998888777666669999999998 256667778888888744 67
Q ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCCceee-------ecCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH
Q 014886 232 FILDANEGYK--PQEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 301 (416)
Q Consensus 232 L~vDaN~~w~--~~~A~~~~~~L~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~ 301 (416)
+.+--.-+|+ .++.+++++.|++.|+. +| +|-.. +.||+.++++++ ..++||.+.=.+.+.+|+
T Consensus 125 vsvKiR~g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 125 VSVKIRLGWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPEDA 198 (309)
T ss_dssp EEEEEESECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHHH
T ss_pred eEEecccccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHHH
Confidence 7777777776 77889999999999874 44 33332 457888888875 678999999999999999
Q ss_pred HHHHHcCCCCEEEeC
Q 014886 302 KKIVKGNLADVINIK 316 (416)
Q Consensus 302 ~~~i~~~a~d~v~~k 316 (416)
.++++.-.+|.+.+=
T Consensus 199 ~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 199 ERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHCCCH-SSEEEES
T ss_pred HHHHHhcCCcEEEEc
Confidence 999887458998763
No 64
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.74 E-value=0.071 Score=52.64 Aligned_cols=134 Identities=16% Similarity=0.218 Sum_probs=93.5
Q ss_pred eeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 014886 175 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANE 238 (416)
Q Consensus 175 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g~~~~L~vDaN~ 238 (416)
..|+...+...+++++.+.++.+.+.||..+-|..|. +++.-.+.+++||+.. ++.+.+-...
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~ 140 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRI 140 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEc
Confidence 4455667778899999999988888999999998872 2233455677777753 2444444444
Q ss_pred CCCH--HHHHHHHHHHHhCCCCceeee-------cCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 239 GYKP--QEAVEVLEKLYEMGVTPVLFE-------QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 239 ~w~~--~~A~~~~~~L~~~~l~~~~iE-------eP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
+|+. .+..++++.|++.++. +|- +-.+ +.+++..++++ +..++||.+.=.+.+.+++.++++.+
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~----~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVK----QAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHH----HcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 5542 3467888999888764 332 1111 12455555555 36789999999999999999999777
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.+++
T Consensus 215 gad~Vmi 221 (319)
T TIGR00737 215 GCDGVMI 221 (319)
T ss_pred CCCEEEE
Confidence 7899987
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.72 E-value=0.069 Score=52.22 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=93.1
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcC-CCEEEEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~KiKvG------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
.|+..++...++++..+.++++.+.| +..+-|.++ .+++.-.+.+++||+.. ++.+.+.-+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 34556777778999999898888888 999998653 23455667788888865 5667776653 44
Q ss_pred HHHHHHHHHHHhCCCCceeee---------------cCC-------------CCCCHHHHHHhHHhhhccCCCeEEeCCC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADES 294 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~r~~~~iPIa~dEs 294 (416)
++..++++.+++.++. .|. +|. .+..++..++++ +.+++||...=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5778889999887753 221 111 111233344443 467899999999
Q ss_pred CCCHHHHHHHHHcCCCCEEEeCC
Q 014886 295 CRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
+.+.+++.+++..| +|.+++=-
T Consensus 243 I~~~~da~~~l~aG-Ad~V~igr 264 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVGT 264 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEcH
Confidence 99999999999988 69988743
No 66
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.62 E-value=0.064 Score=53.89 Aligned_cols=120 Identities=27% Similarity=0.372 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEEEEeCC------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSFILDAN------ 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~~L~vDaN------ 237 (416)
..+.|+.+.+.||..|-|+.+. ++ .--.+.|++||++ ++++.+.+=-|
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3555677778999999999752 22 2235678999997 78864443222
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCCceeeec-------C-CCCCCHHHHHHhHHhhhccCCCeEEeCCCC----------
Q 014886 238 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQ-------P-VHRDDWEGLGHVSHIAKDKFGVSVAADESC---------- 295 (416)
Q Consensus 238 ----~~w~~~~A~~~~~~L~~~~l~~~~iEe-------P-~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~---------- 295 (416)
++.+++++.++++.|++.++. ||+= | ....++.-.++++ +..++||..-=++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~k----~~~~~pv~~~G~i~~~~~~~~~~ 299 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWTK----KLTGLPTITVGSVGLDGDFIGAF 299 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHHH----HHcCCCEEEECCccccccccccc
Confidence 247889999999999988764 4532 2 2211222223333 4678898876555
Q ss_pred --------CCHHHHHHHHHcCCCCEEEe
Q 014886 296 --------RSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 296 --------~~~~d~~~~i~~~a~d~v~~ 315 (416)
.++++..++++.|.+|.+.+
T Consensus 300 ~~~~~~~~~~~~~a~~~l~~g~~D~V~~ 327 (361)
T cd04747 300 AGDEGASPASLDRLLERLERGEFDLVAV 327 (361)
T ss_pred ccccccccCCHHHHHHHHHCCCCCeehh
Confidence 58899999999998998743
No 67
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.50 E-value=0.16 Score=50.17 Aligned_cols=142 Identities=13% Similarity=0.197 Sum_probs=96.1
Q ss_pred HhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C-
Q 014886 168 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P- 228 (416)
Q Consensus 168 LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~- 228 (416)
+|.-.....|+...+...+++++.+.++.+.+.||..+-|.+|- +++.-.+.|++++++. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44333334456667778899999888888878899999999872 3455566788888863 3
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee--------cCCC--------CCCHHHHHHhHHhhhccC-CCeEEe
Q 014886 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QPVH--------RDDWEGLGHVSHIAKDKF-GVSVAA 291 (416)
Q Consensus 229 ~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--------eP~~--------~~d~~~~~~l~~~~r~~~-~iPIa~ 291 (416)
.+++++-.+..=+.+.+.++++.+++.++. +|. |-+. +-+|+..+++++ .. .+||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 345554211111346788999999988864 442 2221 125655555553 44 799998
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.=.+.+.+|+.+.+. + +|.+++=-
T Consensus 201 NGdI~s~~da~~~l~-g-~dgVMigR 224 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS-H-VDGVMVGR 224 (318)
T ss_pred ECCcCCHHHHHHHHh-C-CCEEEECH
Confidence 889999999999885 4 89998743
No 68
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.38 E-value=0.21 Score=47.06 Aligned_cols=131 Identities=11% Similarity=0.191 Sum_probs=89.3
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-C---------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~---------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+...+...+++++.+.++...+ +...+-|.+| + +++.-.+.++++|+. ++.+.+=-...|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 34455666788888877776644 4588888877 1 345556678888875 455666555568
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCC--CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPV--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~--~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+ ++..++++.+++.++...-+..=. ..-|++..+++ +.++||.+.=.+.+.+++.++++.| +|.+++--+
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~ 222 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA 222 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC
Confidence 7 778889999998876421111111 12244444443 1579999999999999999999987 899987543
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.31 E-value=0.19 Score=48.99 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=90.5
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
|+..++...++++..+.++.+.+.|+..+-+.++ .+++.-.+.+++||+.. ++.+.+--+ .+.++
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~~ 167 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PNVTD 167 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CCchh
Confidence 4556666678888888888888889999999765 23445556788888864 455655543 33446
Q ss_pred HHHHHHHHHhCCCCceee-------------e--cCCC-------------CCCHHHHHHhHHhhhccCCCeEEeCCCCC
Q 014886 245 AVEVLEKLYEMGVTPVLF-------------E--QPVH-------------RDDWEGLGHVSHIAKDKFGVSVAADESCR 296 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~i-------------E--eP~~-------------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~ 296 (416)
..++++.+++.++. .| + .|.. +..++..++++ +..++||...=.+.
T Consensus 168 ~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI~ 241 (296)
T cd04740 168 IVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGIA 241 (296)
T ss_pred HHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCCC
Confidence 77888888887653 22 1 1210 01123333443 46789999999999
Q ss_pred CHHHHHHHHHcCCCCEEEeCCC
Q 014886 297 SLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 297 ~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+++.++++.| +|.+++=-.
T Consensus 242 ~~~da~~~l~~G-Ad~V~igra 262 (296)
T cd04740 242 SGEDALEFLMAG-ASAVQVGTA 262 (296)
T ss_pred CHHHHHHHHHcC-CCEEEEchh
Confidence 999999999998 699987544
No 70
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=96.15 E-value=0.11 Score=51.66 Aligned_cols=119 Identities=19% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCEEEEecCC---------------------ChhH----HHHHHHHHHHhC--C-CcEEEEe--CCCCC
Q 014886 191 AELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAVH--P-DSSFILD--ANEGY 240 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~---------------------~~~~----d~~~v~avr~~g--~-~~~L~vD--aN~~w 240 (416)
.+.|+.+.+.||..+-|..+. +++. -.+.|++||++. + .+++..+ .++++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL 224 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 555667778999999999861 2222 345678888863 2 1334332 34578
Q ss_pred CHHHHHHHHHHHHhCCCCceeeec--------CCC---CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQ--------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEe--------P~~---~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
+.++++++++.|++.++. ||+= +.. ..+++..+++ ++..++||..-=.+.++++..++++.|.
T Consensus 225 ~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i----k~~~~ipVi~~G~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI----REHANIATGAVGLITSGAQAEEILQNNR 298 (337)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH----HhhcCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 999999999999988764 5531 111 1123323334 3467899988888999999999999998
Q ss_pred CCEEEe
Q 014886 310 ADVINI 315 (416)
Q Consensus 310 ~d~v~~ 315 (416)
+|.|.+
T Consensus 299 ~D~V~~ 304 (337)
T PRK13523 299 ADLIFI 304 (337)
T ss_pred CChHHh
Confidence 898743
No 71
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.03 E-value=0.15 Score=56.54 Aligned_cols=123 Identities=23% Similarity=0.332 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEE--EEeC----C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA----N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~~L--~vDa----N 237 (416)
..+.++.+++.||..|-|..+. ++ .--++.+++||++ ++++.+ ++-+ .
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 3555677788999999999761 22 2345678899997 666433 3332 4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec--------CCCCCCHHHH-HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------PVHRDDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------P~~~~d~~~~-~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
++|+.++++++++.|++.++. ||+= +.+.. ...+ ..+.+.+++..++||..-=.+.++++..++++.+
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 679999999999999998864 5541 11100 0001 1122223346789999988999999999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.+.+
T Consensus 710 ~~D~v~~ 716 (765)
T PRK08255 710 RADLCAL 716 (765)
T ss_pred CcceeeE
Confidence 9999865
No 72
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=95.98 E-value=0.21 Score=50.17 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCc--EEEEe---C-C
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS--SFILD---A-N 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~--~L~vD---a-N 237 (416)
..+.++++++.||..+-|+-.. +++ --++.|++||++ +++. .+++= . +
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Confidence 3556677888999999999741 222 346779999998 7763 34432 2 2
Q ss_pred -CCCCHHHHHHHHHHHHhCC-CCce----eeecCCCCCCHH--HH-HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 -EGYKPQEAVEVLEKLYEMG-VTPV----LFEQPVHRDDWE--GL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 -~~w~~~~A~~~~~~L~~~~-l~~~----~iEeP~~~~d~~--~~-~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
.+|+.+++.++++.|++.+ +... |-.++-..-... ++ ...+...+....+|+.+--.+++++...++++.|
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3789999999999999988 4321 222221111111 11 1112122346679999998999999999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.|-+
T Consensus 311 ~aDlVa~ 317 (363)
T COG1902 311 RADLVAM 317 (363)
T ss_pred CCCEEEe
Confidence 8898743
No 73
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=95.94 E-value=0.29 Score=49.29 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Chh----HHHHHHHHHHHh-CCCc-EEEEe-------
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDS-SFILD------- 235 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~~----~d~~~v~avr~~-g~~~-~L~vD------- 235 (416)
..+.|+.+++.||..+-|+.+. +++ --++.|++||++ +++. -+++-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 3556677788999999999751 121 235678899997 6653 33442
Q ss_pred CCCCCCHHH-HHHHHHHHHhCCCCceeeecCCCCC--CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 236 ANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 236 aN~~w~~~~-A~~~~~~L~~~~l~~~~iEeP~~~~--d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
..++++.++ ++++++.|++.++. ||+=-.... ...-...+.+.+++.+++||...-. .+++...++++.|.+|.
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCE
Confidence 235688888 89999999988764 665222100 0000111222233467889887655 48999999999999999
Q ss_pred EEe
Q 014886 313 INI 315 (416)
Q Consensus 313 v~~ 315 (416)
|.+
T Consensus 318 V~~ 320 (362)
T PRK10605 318 VAF 320 (362)
T ss_pred EEE
Confidence 854
No 74
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.81 E-value=0.27 Score=47.96 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=98.7
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHc--CCCEEEEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~KiKvG------------~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
|+..++...+++++.+.++.+.+. ++..|-+.+| .+++.-.+.++++|+.. +..+.+.-+. +.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~~ 168 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--NV 168 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--Ch
Confidence 445566667889988888777654 3889999887 13455566788888764 4567766654 44
Q ss_pred HHHHHHHHHHHhCCCCceeee---------------cCCCCC---------C----HHHHHHhHHhhhccCCCeEEeCCC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFE---------------QPVHRD---------D----WEGLGHVSHIAKDKFGVSVAADES 294 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iE---------------eP~~~~---------d----~~~~~~l~~~~r~~~~iPIa~dEs 294 (416)
++..++++.+++.++. +|. +|.... . ++..+++ ++..++||.+.=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~ipvi~~GG 242 (300)
T TIGR01037 169 TDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDV----YKMVDIPIIGVGG 242 (300)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHH----HhcCCCCEEEECC
Confidence 6778899999988764 442 110000 0 1222333 3467899999989
Q ss_pred CCCHHHHHHHHHcCCCCEEEeCCCCC--c-h-HHH-HHHHHHHHHcCCc
Q 014886 295 CRSLDDVKKIVKGNLADVINIKLAKV--G-V-LGA-LEIIEVVRASGLN 338 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~k~~k~--G-i-~~~-l~i~~~A~~~gi~ 338 (416)
+.+.+++.+++..| +|.+++=-.-+ | + ... ..+.++.+++|..
T Consensus 243 I~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 243 ITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred CCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999999988 79988643322 2 2 222 2355566666653
No 75
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.46 E-value=0.26 Score=49.41 Aligned_cols=119 Identities=17% Similarity=0.271 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCEEEEecC---------------------CChhH----HHHHHHHHHHh-C----CCcEEEE--eC-
Q 014886 190 AAELASKYRKQGFTTLKLKVG---------------------KNLKE----DIEVLRAIRAV-H----PDSSFIL--DA- 236 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG---------------------~~~~~----d~~~v~avr~~-g----~~~~L~v--Da- 236 (416)
..+.|+++.+.||..+-|..+ .+++. -.+.|++||++ + +++.+.+ ..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 455667778899999999864 12222 34568889987 6 5655443 32
Q ss_pred ---CCCCCHHHHHHHHHHHHhCCCCceeee-------cCCC---CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 237 ---NEGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 237 ---N~~w~~~~A~~~~~~L~~~~l~~~~iE-------eP~~---~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
.++++.++.+++++.|++.++. ||+ .+.. .......+.+++.. ..++||.+-=.+.++++..+
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHH
Confidence 3577899999999999998874 665 1111 11122233343211 13789998778899999999
Q ss_pred HHHcCCCCEE
Q 014886 304 IVKGNLADVI 313 (416)
Q Consensus 304 ~i~~~a~d~v 313 (416)
+++.+ +|.+
T Consensus 302 ~l~~g-aD~V 310 (353)
T cd04735 302 ALETG-ADLV 310 (353)
T ss_pred HHHcC-CChH
Confidence 99875 6765
No 76
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.17 E-value=0.41 Score=45.43 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=79.6
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEEE-------ecC-------CChhHHHHHHHHHHHh--C-CCcEE--EEeCCCC--
Q 014886 181 TIPIVSPAEAAELASKYRKQGFTTLKL-------KVG-------KNLKEDIEVLRAIRAV--H-PDSSF--ILDANEG-- 239 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~G~~~~Ki-------KvG-------~~~~~d~~~v~avr~~--g-~~~~L--~vDaN~~-- 239 (416)
..+..+++++.+.++++.+.|...+|| |.| .+.++-+++|++++++ . +++.| +.|+-..
T Consensus 77 ~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~ 156 (243)
T cd00377 77 DTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGE 156 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccC
Confidence 344557777888889999999999999 222 2567888899999986 3 35443 5677544
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
...++|++.++...+.|-...|+|-|. +.+.++++.+ +.+.|+..-
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 679999999999999987777999886 4566777764 578888865
No 77
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.13 E-value=0.71 Score=46.62 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCC----
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDAN---- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~--~L~vDaN---- 237 (416)
..+.|+.+.+.||..+-|+.+. ++ .--.+.|++||++ ++++ .+++-+.
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 3556677788999999999762 11 2235678999997 7775 4444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCC-----ceeeecC-CC----CC--CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 238 --EGYKPQEAVEVLEKLYEMGVT-----PVLFEQP-VH----RD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~-----~~~iEeP-~~----~~--d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
+.++.++++++++.|++. +. .-+.+.. .. +. .++..+++ ++..++||..-=.+.++++..+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV----KQVTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHH----HHHCCCCEEEeCCCCCHHHHHH
Confidence 237899999999999873 11 0112211 10 11 12222333 3467899998878999999999
Q ss_pred HHHcCCCCEEEe
Q 014886 304 IVKGNLADVINI 315 (416)
Q Consensus 304 ~i~~~a~d~v~~ 315 (416)
+++.+.+|.|.+
T Consensus 307 ~l~~g~~D~V~~ 318 (370)
T cd02929 307 VVKSGILDLIGA 318 (370)
T ss_pred HHHcCCCCeeee
Confidence 999999999855
No 78
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.08 E-value=0.82 Score=45.57 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeCC-----
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN----- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~-~~L~vDaN----- 237 (416)
..+.++.+.+.||..+-|..+. ++ .--.+.|++||++ +++ +.+++-+.
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 3556677788999999999762 11 2235678889987 654 34444332
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCceeeec--CC-----CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 --EGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-----~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
.+.+.++.+++++.|++.++. +|+= .. ....++..++++ +.+++||..-=.+. +++..++++.+
T Consensus 234 ~~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 234 MGDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 135889999999999987753 5542 11 112333344444 46789999877776 88999999999
Q ss_pred CCCEEEe
Q 014886 309 LADVINI 315 (416)
Q Consensus 309 a~d~v~~ 315 (416)
.+|.|.+
T Consensus 307 ~~D~V~~ 313 (338)
T cd02933 307 KADLVAF 313 (338)
T ss_pred CCCEEEe
Confidence 8999854
No 79
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=94.96 E-value=0.58 Score=44.57 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=100.0
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC--------------
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-------------- 239 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN~~-------------- 239 (416)
+|+....+..+.+++ +++...|... +-+|...-+|.+.++.+.+.++ .+.+.+|+++.
T Consensus 75 ~pv~~~GGi~s~~d~----~~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~g 148 (254)
T TIGR00735 75 IPLTVGGGIKSIEDV----DKLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYG 148 (254)
T ss_pred CCEEEECCCCCHHHH----HHHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeC
Confidence 344555566676654 4455667655 4567555567788888888753 57889997532
Q ss_pred C---CHHHHHHHHHHHHhCCCCceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 240 Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 240 w---~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
| +..+..++++.+++.++...-+ ..+.. .|++.++++++ .+++||.+.=-+.+.+++.++++.+.+
T Consensus 149 w~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~ 223 (254)
T TIGR00735 149 GRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKA 223 (254)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCc
Confidence 2 2345678889999887651112 12222 24565666653 678999988889999999999998878
Q ss_pred CEEEeCCCC-CchHHHHHHHHHHHHcCCcE
Q 014886 311 DVINIKLAK-VGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 311 d~v~~k~~k-~Gi~~~l~i~~~A~~~gi~~ 339 (416)
|.+.+--.. .|-.....+.+.++++|+++
T Consensus 224 dgv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 224 DAALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred ceeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 887553222 24123456678888898875
No 80
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=93.81 E-value=0.77 Score=42.35 Aligned_cols=97 Identities=11% Similarity=0.231 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+++.+.++.|-+.++. .+|=++...+. +.++++++ +.-++.|-+| ++.+.++++++++.|+ +++ +-|+
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~---~~~~~~vGAG-TVl~~~~a~~a~~aGA-~Fi-vsP~- 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRK---EVPDALIGAG-TVLNPEQLRQAVDAGA-QFI-VSPG- 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHH---HCCCCEEEEE-eCCCHHHHHHHHHcCC-CEE-ECCC-
Confidence 789999999999999986 99999976553 44555653 1224566665 7899999999999985 776 2222
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+ ..++++.|+++|+++++|+++-|.+.
T Consensus 89 --~--~~~v~~~~~~~~i~~iPG~~TptEi~ 115 (204)
T TIGR01182 89 --L--TPELAKHAQDHGIPIIPGVATPSEIM 115 (204)
T ss_pred --C--CHHHHHHHHHcCCcEECCCCCHHHHH
Confidence 2 24678999999999999998766544
No 81
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=93.70 E-value=0.64 Score=45.48 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
|.+....-+++|++.|.++ +==-++. ++-+.+++++ +++++|+.+|=... ..-+.+..+.| +|-+.++|+.
T Consensus 34 Dv~aTv~QI~~L~~aG~dI--VRvtv~~~e~A~A~~~Ik----~~~~vPLVaDiHf~-~rla~~~~~~g-~~k~RINPGN 105 (361)
T COG0821 34 DVEATVAQIKALERAGCDI--VRVTVPDMEAAEALKEIK----QRLNVPLVADIHFD-YRLALEAAECG-VDKVRINPGN 105 (361)
T ss_pred cHHHHHHHHHHHHHcCCCE--EEEecCCHHHHHHHHHHH----HhCCCCEEEEeecc-HHHHHHhhhcC-cceEEECCcc
Confidence 4555566677787777643 3323332 2344555555 47899999997765 55555666665 8999999999
Q ss_pred Cc-hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 320 VG-VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 320 ~G-i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
+| -.....+++.|+++|+++-+|-..
T Consensus 106 ig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 106 IGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 99 567889999999999999886654
No 82
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.97 E-value=1.7 Score=40.69 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.++|.++++.|-+.|+. .+|=.+...+ .+.+++|++..+++. ++-|-+| ++.|.++++.+++.|+ +++.- |+
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA-~FiVs-P~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGA-NFIVT-PL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCC-CEEEC-CC
Confidence 789999999999999986 9999997643 445666653222222 2444444 8899999999999985 77632 22
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCCchHHH
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLA 350 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig 350 (416)
+. ..+++.|+++|+++++|+++-|-+-
T Consensus 100 ---~~--~~v~~~~~~~~i~~iPG~~TpsEi~ 126 (222)
T PRK07114 100 ---FN--PDIAKVCNRRKVPYSPGCGSLSEIG 126 (222)
T ss_pred ---CC--HHHHHHHHHcCCCEeCCCCCHHHHH
Confidence 11 4568999999999999999766544
No 83
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=92.92 E-value=1.4 Score=43.70 Aligned_cols=110 Identities=17% Similarity=0.267 Sum_probs=74.6
Q ss_pred CCCcEEEEeC--CCC-CCHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHH
Q 014886 227 HPDSSFILDA--NEG-YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (416)
Q Consensus 227 g~~~~L~vDa--N~~-w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~ 302 (416)
|.+..+.|-. |.. -+.+..++-+++|++.|.+ .+==-++. ++.+.+++++ +++++|+.+|=. ++..-+.
T Consensus 23 Gg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIH-Fd~~lAl 95 (360)
T PRK00366 23 GGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIH-FDYRLAL 95 (360)
T ss_pred CCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecC-CCHHHHH
Confidence 4455555543 222 2456667777778877764 34334432 2334455554 478999999976 4555556
Q ss_pred HHHHcCCCCEEEeCCCCCc-hH-HHHHHHHHHHHcCCcEEEccC
Q 014886 303 KIVKGNLADVINIKLAKVG-VL-GALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~G-i~-~~l~i~~~A~~~gi~~~~~~~ 344 (416)
..++.| +|.+.++|+.+| .. ...++++.|+++|+++-+|..
T Consensus 96 ~a~~~G-~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 96 AAAEAG-ADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred HHHHhC-CCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecC
Confidence 667766 799999999998 45 578899999999999988654
No 84
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.83 E-value=1.6 Score=40.10 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+++.+.++.|-+-|+. .+|=++...+ ++.++++++ +.-++-|-+| ++.+.++++++++.|+ +++.- |+.
T Consensus 14 ~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~---~~~~~~vGAG-TVl~~e~a~~ai~aGA-~FivS-P~~ 85 (201)
T PRK06015 14 DVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAA---EVEEAIVGAG-TILNAKQFEDAAKAGS-RFIVS-PGT 85 (201)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH---HCCCCEEeeE-eCcCHHHHHHHHHcCC-CEEEC-CCC
Confidence 789999999999999986 9999998654 344555543 1223445554 7899999999999995 76532 221
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
-.++++.|+++|+++++|+++-|.+-.
T Consensus 86 -----~~~vi~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 86 -----TQELLAAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred -----CHHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 245788999999999999997665543
No 85
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=92.70 E-value=1.5 Score=40.43 Aligned_cols=96 Identities=14% Similarity=0.222 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.++|+.+++.|-+-|+. -||=|+...+ .+..+.+++ +.-++-|-+| ++-+.+++.++++.|+-=+|.|
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~---~~p~~lIGAG-TVL~~~q~~~a~~aGa~fiVsP---- 92 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAK---EFPEALIGAG-TVLNPEQARQAIAAGAQFIVSP---- 92 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHH---hCcccEEccc-cccCHHHHHHHHHcCCCEEECC----
Confidence 689999999999999985 8999998765 345566654 2223555555 7889999999999996333333
Q ss_pred CchHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 320 VGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 320 ~Gi~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
|++ -++++.|..+|+++++|+++-|-+
T Consensus 93 -~~~--~ev~~~a~~~~ip~~PG~~TptEi 119 (211)
T COG0800 93 -GLN--PEVAKAANRYGIPYIPGVATPTEI 119 (211)
T ss_pred -CCC--HHHHHHHHhCCCcccCCCCCHHHH
Confidence 222 457899999999999999865443
No 86
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=92.64 E-value=0.69 Score=46.15 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCCC---
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDANE--- 238 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~~--~L~vDaN~--- 238 (416)
..+.|+.+++.||..+-|+.+. ++ .--++.|++||+. +++. .+++-+..
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 3556677788999999999851 22 2246678999997 7775 56666653
Q ss_pred -CCCHHHHHHHHHHHHhCCCCce------e--eecCCC--CCCHHHH--HHhHHhhhccCCCeEEeCCCCCCHHHHHHHH
Q 014886 239 -GYKPQEAVEVLEKLYEMGVTPV------L--FEQPVH--RDDWEGL--GHVSHIAKDKFGVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 239 -~w~~~~A~~~~~~L~~~~l~~~------~--iEeP~~--~~d~~~~--~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i 305 (416)
+++.++..++++.+++.++... + ...|.. +.+.... ..+.+..++.+++||...-.+.+++...+++
T Consensus 231 ~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 231 GGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp TSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHH
Confidence 4466777777777765432210 1 122322 1111100 0122223346789999998999998899999
Q ss_pred HcCCCCEEEe
Q 014886 306 KGNLADVINI 315 (416)
Q Consensus 306 ~~~a~d~v~~ 315 (416)
+.|.+|.+-+
T Consensus 311 ~~g~~DlV~~ 320 (341)
T PF00724_consen 311 EEGKADLVAM 320 (341)
T ss_dssp HTTSTSEEEE
T ss_pred hcCCceEeec
Confidence 9999999854
No 87
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=92.28 E-value=1.3 Score=43.54 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
+.+..++-+++|++.|.+ .+==-++. ++.+.++.++ +.+++|+.+|=..... -....++.| +|-+.++|+.
T Consensus 32 Dv~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd~~-lAl~a~~~g-~dkiRINPGN 103 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFDYR-LAALAMAKG-VAKVRINPGN 103 (346)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCCcH-HHHHHHHhc-cCeEEECCCC
Confidence 456666777778877764 33333332 2233445554 4789999999775433 334455555 7999999999
Q ss_pred Cc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 320 VG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 320 ~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+| -....++++.|+++|+++-+|..
T Consensus 104 ig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 104 IGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 99 56788999999999999988654
No 88
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.85 E-value=13 Score=36.91 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
+++++..+.++......+..+-+-+|.. ++|.++++++.+..++. -|.||..++++... +++++.+++.
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~-i~~ik~ik~~-------- 148 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEHF-VQFVAKAREA-------- 148 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHHh--------
Confidence 4677777777666545455666667643 58999999999963333 47789999987654 4555555442
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-------CCCC----Cc---hHHHHHHH
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-------KLAK----VG---VLGALEII 329 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~-------k~~k----~G---i~~~l~i~ 329 (416)
+ -+++|.+| ++.|.+..+.+++.| +|++.+ -.++ +| ++.-.+.+
T Consensus 149 --~------------------P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 149 --W------------------PDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred --C------------------CCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 0 13455555 567788899999988 588752 1122 23 34456788
Q ss_pred HHHHHcCCcEEEccCC
Q 014886 330 EVVRASGLNLMIGGMV 345 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~ 345 (416)
+.|+.+|++++-.+-+
T Consensus 207 ~~a~~~gvpiIADGGi 222 (346)
T PRK05096 207 DAAHGLGGQIVSDGGC 222 (346)
T ss_pred HHHHHcCCCEEecCCc
Confidence 8999999999875543
No 89
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.72 E-value=7.6 Score=38.48 Aligned_cols=117 Identities=15% Similarity=0.298 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHcCC--CEEEEecC-CChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCce---
Q 014886 188 AEAAELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPV--- 260 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~--~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~~~~l~~~--- 260 (416)
.+..+++.++++.|. ..+-|.+. .....-.+.|+.+|+..|+..+++ |.- |.++|.+. .+.|+...
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l----~~aGad~i~vg 168 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVREL----ENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHH----HHcCcCEEEEC
Confidence 344677888899966 99988776 344566677999999999888887 665 77776554 34554311
Q ss_pred ------eeecCCC---CCCH--HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 261 ------LFEQPVH---RDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 261 ------~iEeP~~---~~d~--~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++|++.. ..|| ..++++++ ...+||.+|--+.+..|+.+++..| +|.+.+-
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG 230 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIG 230 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEec
Confidence 2465442 2233 23555543 4579999999999999999999998 4777664
No 90
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.49 E-value=7.9 Score=37.78 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=83.9
Q ss_pred eeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG-~--------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
|+..++... +++++.+.++.+.+.|+..+-+.++ + +++.-.+.++++++.. ++.+.+=-.-
T Consensus 101 p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-- 177 (299)
T cd02940 101 ILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-- 177 (299)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC--
Confidence 444555444 8888888888776679999999887 1 2233444566776642 2333333222
Q ss_pred CHHHHHHHHHHHHhCCCCceee----------------ecCCCC-----------------CCHHHHHHhHHhhhccC--
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLF----------------EQPVHR-----------------DDWEGLGHVSHIAKDKF-- 285 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i----------------EeP~~~-----------------~d~~~~~~l~~~~r~~~-- 285 (416)
+.++..++++.+++.++. .| +.|.+. -.++..++++ ++.
T Consensus 178 ~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~----~~~~~ 251 (299)
T cd02940 178 NITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIA----RAPEP 251 (299)
T ss_pred CchhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHH----HhcCC
Confidence 233566788888887654 22 223220 0133344444 356
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
.+||...=-+.+.+|+.+++..| +|.+|+--.
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta 283 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG-ASVVQVCTA 283 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CChheEcee
Confidence 79999999999999999999988 588887544
No 91
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=91.47 E-value=8.7 Score=38.74 Aligned_cols=132 Identities=17% Similarity=0.144 Sum_probs=77.6
Q ss_pred ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee-----ecCC--CCCCHHHHHHhHHhhhcc
Q 014886 212 NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-----EQPV--HRDDWEGLGHVSHIAKDK 284 (416)
Q Consensus 212 ~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i-----EeP~--~~~d~~~~~~l~~~~r~~ 284 (416)
+++.-.+++++||+.+=.+++++ +...+.++++.+.+.++....+ +|=. ...++..+.++.+ +
T Consensus 117 ~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~----~ 186 (369)
T TIGR01304 117 KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG----E 186 (369)
T ss_pred ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH----H
Confidence 34555677888888642244555 2345667788888877652222 1100 1234666666653 5
Q ss_pred CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-----------hHHHHHHHHHHHH-------cC---CcEEEcc
Q 014886 285 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-----------VLGALEIIEVVRA-------SG---LNLMIGG 343 (416)
Q Consensus 285 ~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-----------i~~~l~i~~~A~~-------~g---i~~~~~~ 343 (416)
.++||..+. +.+..+..++++.| +|++. .+..| +..+..+.+.+++ .| ++++-.+
T Consensus 187 ~~IPVI~G~-V~t~e~A~~~~~aG-aDgV~--~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdG 262 (369)
T TIGR01304 187 LDVPVIAGG-VNDYTTALHLMRTG-AAGVI--VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADG 262 (369)
T ss_pred CCCCEEEeC-CCCHHHHHHHHHcC-CCEEE--ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 689999844 89999999999977 78887 22211 1112233333322 33 8888877
Q ss_pred CCchHHHHHHHHHH
Q 014886 344 MVETRLAMGFAGHL 357 (416)
Q Consensus 344 ~~es~ig~~a~~hl 357 (416)
-+.++-.++.++.+
T Consensus 263 GI~tg~di~kAlAl 276 (369)
T TIGR01304 263 GIETSGDLVKAIAC 276 (369)
T ss_pred CCCCHHHHHHHHHc
Confidence 77666555555443
No 92
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=91.44 E-value=5.3 Score=37.64 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCC------CCCHH---HHHHHHHHHHhCCCCcee
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~------~w~~~---~A~~~~~~L~~~~l~~~~ 261 (416)
+.++++++.|..++=+-.- .-+|-++++.+.+. +..+-+.+|++. +|... +..++++++++.++. .+
T Consensus 88 ~~v~~ll~~G~~rViiGt~--av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~-~i 164 (241)
T COG0106 88 EDVEALLDAGVARVIIGTA--AVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA-HI 164 (241)
T ss_pred HHHHHHHHCCCCEEEEecc--eecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC-eE
Confidence 4467788899988654332 24677888888888 455778899986 67432 567788888887764 33
Q ss_pred e------ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc-CCCCEEEeCCCCCc-h--HHHHHHH
Q 014886 262 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG-NLADVINIKLAKVG-V--LGALEII 329 (416)
Q Consensus 262 i------EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~-~a~d~v~~k~~k~G-i--~~~l~i~ 329 (416)
| |==+.--|++.+++|+. .+.+|+.+-=-+.+..|++.+-+. |..+++.=+.-..| + .++++..
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 3 22333346777888875 679999988889999999998888 67777766655555 4 4555443
No 93
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.39 E-value=4.1 Score=40.33 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC----------CChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHHH
Q 014886 187 PAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEKL 252 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKvG----------~~~~~d~~~v~avr~~g~----~~~L~vDaN~~w~~~~A~~~~~~L 252 (416)
.++..+.++++. .+...+-+.++ .+++.-.+.+++||+... ++.+.+=-...|+.++..++++.+
T Consensus 147 ~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 455666555543 34677888775 123444567888887532 455665555567777888999999
Q ss_pred HhCCCCceeee--c----------CCCCC-------------CHHHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHHH
Q 014886 253 YEMGVTPVLFE--Q----------PVHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 253 ~~~~l~~~~iE--e----------P~~~~-------------d~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~i 305 (416)
++.++. +|. - |.... .++..++++ +.. ++||.+-=-+.+.+|+.+++
T Consensus 226 ~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~----~~~~~~ipIi~~GGI~t~~da~e~l 299 (327)
T cd04738 226 LEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY----KLTGGKIPIIGVGGISSGEDAYEKI 299 (327)
T ss_pred HHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH----HHhCCCCcEEEECCCCCHHHHHHHH
Confidence 988764 443 1 11100 022233333 344 68999888899999999999
Q ss_pred HcCCCCEEEe
Q 014886 306 KGNLADVINI 315 (416)
Q Consensus 306 ~~~a~d~v~~ 315 (416)
..| +|.+|+
T Consensus 300 ~aG-Ad~V~v 308 (327)
T cd04738 300 RAG-ASLVQL 308 (327)
T ss_pred HcC-CCHHhc
Confidence 877 688876
No 94
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.25 E-value=2.2 Score=39.56 Aligned_cols=97 Identities=12% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.-+.++|+++++.|.+.++. .||=++...+ ++.++.+++ +.-++-|-+| ++.+.++++..++.|+ +++..-
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~---~~p~~~IGAG-TVl~~~~a~~a~~aGA-~FivsP- 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAK---EVPEALIGAG-TVLNPEQLAQAIEAGA-QFIVSP- 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHH---HCCCCEEEEe-eccCHHHHHHHHHcCC-CEEECC-
Confidence 45789999999999999986 9999987654 333445543 2234555555 7778899999999995 776431
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 318 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 318 ~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
|+.+ .+++.|++++++++||+++-|.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~TptE 120 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPSE 120 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHHH
Confidence 2233 6788899999999999986444
No 95
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.11 E-value=3.7 Score=39.24 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=70.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec--------------CCCCCCHHHHHHhHHhhhccCCCeEE--eCCCCCCHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDV 301 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d~ 301 (416)
..|+.++-+++++.|.+.|+. .||= |...++++.+++++.. ..+..++ ..-...+..++
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~---~~~~~~~~~~~~~~~~~~~i 91 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA---LKQAKLGVLLLPGIGTVDDL 91 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHh---ccCCEEEEEecCCccCHHHH
Confidence 346789999999999999985 8887 5555666767776542 2234443 33334567888
Q ss_pred HHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEcc
Q 014886 302 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 302 ~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~ 343 (416)
.++.+.| +|.+.+-....=.....+++..|+++|+.+.+.-
T Consensus 92 ~~a~~~g-~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 92 KMAADLG-VDVVRVATHCTEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHHcC-CCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEE
Confidence 8888876 7988874432115567889999999999886644
No 96
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.94 E-value=5.1 Score=37.98 Aligned_cols=153 Identities=18% Similarity=0.182 Sum_probs=92.7
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC--CCcEEEEeCCC------------CCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANE------------GYK 241 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g--~~~~L~vDaN~------------~w~ 241 (416)
+|+....+..+.+++ +++.+.|...+ -+|...-.+.+.++.+.+.+ ..+.+.+|... +|.
T Consensus 75 ipv~~~GGi~s~~~~----~~~l~~Ga~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~ 148 (253)
T PRK02083 75 IPLTVGGGIRSVEDA----RRLLRAGADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR 148 (253)
T ss_pred CCEEeeCCCCCHHHH----HHHHHcCCCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc
Confidence 344445556666554 44555676554 55644445667888888874 34667788643 232
Q ss_pred ---HHHHHHHHHHHHhCCCCceeeecCCC------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 242 ---PQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 242 ---~~~A~~~~~~L~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
.....++++.+++.++. .++=.++. -.|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~g 223 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADA 223 (253)
T ss_pred eecCCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccE
Confidence 11445677778777764 23222222 235666777764 56899998888999999999987633666
Q ss_pred EEeC-CCCCchHHHHHHHHHHHHcCCcE
Q 014886 313 INIK-LAKVGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 313 v~~k-~~k~Gi~~~l~i~~~A~~~gi~~ 339 (416)
+.+- .-.-|-....++.+.+++.|+++
T Consensus 224 vivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 224 ALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred EeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 5542 22224222345567777888875
No 97
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.91 E-value=11 Score=33.50 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=84.6
Q ss_pred eeeeEeecCCC----HHHHHHHHHHHHHcCCCEEEEecC----CC--hhHHHHHHHHHHHhC-CCcEEEEeCCCCC--CH
Q 014886 176 ITTDITIPIVS----PAEAAELASKYRKQGFTTLKLKVG----KN--LKEDIEVLRAIRAVH-PDSSFILDANEGY--KP 242 (416)
Q Consensus 176 v~~~~~~~~~~----~~~~~~~~~~~~~~G~~~~KiKvG----~~--~~~d~~~v~avr~~g-~~~~L~vDaN~~w--~~ 242 (416)
+++...++..+ .++..+.++++.+.|...+.+-.. .+ .+.-.+.++++++.. .++.+++..+-.+ +.
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 45555555555 778888999999999999998654 11 344466677787763 5788888776443 56
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
++..+.++.+++.++. +|-..... .+++.++++.+.. ..++|+...-...++..+..++..|+
T Consensus 129 ~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~~gg~~~~~~~~~~~~~Ga 195 (201)
T cd00945 129 DEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAV--GGRVGVKAAGGIKTLEDALAAIEAGA 195 (201)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhc--ccCCcEEEECCCCCHHHHHHHHHhcc
Confidence 7767777767777764 77665542 2677777765421 11456644333446777888888774
No 98
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.91 E-value=4.8 Score=42.69 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=98.3
Q ss_pred eeeeEeecCCCHHH-------HHHHHHHHHHcCCCEEEEecC--CChh--------HHHHHHHHHHHh-CCC-cEEEEeC
Q 014886 176 ITTDITIPIVSPAE-------AAELASKYRKQGFTTLKLKVG--KNLK--------EDIEVLRAIRAV-HPD-SSFILDA 236 (416)
Q Consensus 176 v~~~~~~~~~~~~~-------~~~~~~~~~~~G~~~~KiKvG--~~~~--------~d~~~v~avr~~-g~~-~~L~vDa 236 (416)
+|+....++.+.++ ..+.++++...|...+=|.-. .+++ .+.+.|+.+.+. |.+ +.+.||+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 44444444455433 367788899989876554322 1221 245788888888 455 7888997
Q ss_pred CCC----------------------------------C---CHHHHHHHHHHHHhCCCCceeeecCCCCC------CHHH
Q 014886 237 NEG----------------------------------Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHRD------DWEG 273 (416)
Q Consensus 237 N~~----------------------------------w---~~~~A~~~~~~L~~~~l~~~~iEeP~~~~------d~~~ 273 (416)
... | +--++.++++++++++.. +.+=-=+..| |++-
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 643 2 123678899999998864 4443344332 5666
Q ss_pred HHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-CCCCCchHHHHHHHHHHHHcCCcE
Q 014886 274 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-KLAKVGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 274 ~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~-k~~k~Gi~~~l~i~~~A~~~gi~~ 339 (416)
+++++. ..++||.+-=-+.+++|+.++++.+.+|..-. .+-..+-....++-...++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777764 68999999888999999999998654555432 121222112233445566677765
No 99
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.76 E-value=4 Score=37.92 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccC----CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~----~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.++++++++.|-+-|+. .+|=++...+ ++.++++++ +. ++-|-+| ++.|.++++++++.|+ +++.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~----~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA-~Fiv- 93 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVE----LYKDDPEVLIGAG-TVLDAVTARLAILAGA-QFIV- 93 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHH----HcCCCCCeEEeee-eCCCHHHHHHHHHcCC-CEEE-
Confidence 899999999999999986 8999998654 344555553 33 2445555 8899999999999995 7763
Q ss_pred CCCCCchHHHHHHHHHHHHcCCcEEEccCCchHH
Q 014886 316 KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRL 349 (416)
Q Consensus 316 k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~i 349 (416)
-|+. -.++++.|+++|+++++|++..+.+
T Consensus 94 sP~~-----~~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 94 SPSF-----NRETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred CCCC-----CHHHHHHHHHcCCCEECCcCCHHHH
Confidence 2222 1456788999999999999865554
No 100
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=90.75 E-value=5.3 Score=37.43 Aligned_cols=122 Identities=21% Similarity=0.343 Sum_probs=76.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CC-CcEEEEeCC------CCCCHH---HHHHHHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDAN------EGYKPQ---EAVEVLEK 251 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~-~~~L~vDaN------~~w~~~---~A~~~~~~ 251 (416)
+..+.++ ++.+.+.|... +-+|...-.|.+.++.+++. ++ .+-+.+|+. .+|+.+ ...++++.
T Consensus 84 Gi~~~~~----~~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 84 GIRSAED----AASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 4445544 34556678874 56674444566778888887 43 345678865 355321 33566777
Q ss_pred HHhCCCCceee-----ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 252 LYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 252 L~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.++....+ +......+++.++++++ ...+||.+.=-+.+.+++.++.+.| ++.+.+
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 77777542222 11222345676777764 6789999999999999999988777 466555
No 101
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=90.74 E-value=6.8 Score=38.19 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 244 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~~ 244 (416)
|..++..+...++++.+.|...+-|. .| .+.++=+++|++++++ ++++-| |.|+-.....++
T Consensus 88 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 88 GFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 44588888888999999999888762 23 2456677889988886 455443 568876677999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
|++.++...+.|-...|+|-|-. .+.++++.+ +.+.|+..
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMTE---LEMYRRFAD----AVKVPILA 207 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCCC---HHHHHHHHH----hcCCCEEE
Confidence 99999999998877779988653 566677764 56778754
No 102
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.69 E-value=7 Score=39.43 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=49.0
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC---------CCc--hHHHHHHHHHH---HHc
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA---------KVG--VLGALEIIEVV---RAS 335 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~---------k~G--i~~~l~i~~~A---~~~ 335 (416)
++..+.++.+ +.++||..+. +.+.++++++++.| +|++.+-.. ..| +...-.+.+.+ +++
T Consensus 175 ~~~~i~~~ik----~~~ipVIaG~-V~t~e~A~~l~~aG-AD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 175 EPLNLKEFIY----ELDVPVIVGG-CVTYTTALHLMRTG-AAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDY 248 (368)
T ss_pred CHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHh
Confidence 4555555543 4589998854 89999999999977 688855421 112 11222233333 333
Q ss_pred -------CCcEEEccCCchHHHHHHHHHH
Q 014886 336 -------GLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 336 -------gi~~~~~~~~es~ig~~a~~hl 357 (416)
+++++..+-+.++-.++.++.+
T Consensus 249 l~~~~~~~vpVIAdGGI~~~~diakAlal 277 (368)
T PRK08649 249 LDETGGRYVHVIADGGIGTSGDIAKAIAC 277 (368)
T ss_pred hhhhcCCCCeEEEeCCCCCHHHHHHHHHc
Confidence 6899887766666555554443
No 103
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.64 E-value=6.4 Score=38.25 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=75.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHH
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQ 243 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~--g~~~~L--~vDaN~~w~~~ 243 (416)
-|..++.++...++++.+.|...+-|. .| .+.++=+++|++++++ .+++-| |.|+-.....+
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 161 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLD 161 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHH
Confidence 345568888888999999999887663 23 2456678889999986 345433 56988777899
Q ss_pred HHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
+|++-++...+.|-...|+|-|.+ .+.++++.+ +.+.|+.
T Consensus 162 eAI~Ra~ay~~AGAD~vfi~g~~~---~e~i~~~~~----~i~~Pl~ 201 (285)
T TIGR02317 162 AAIERAKAYVEAGADMIFPEALTS---LEEFRQFAK----AVKVPLL 201 (285)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEE
Confidence 999999999998877679987654 455666664 5667874
No 104
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=90.30 E-value=15 Score=33.90 Aligned_cols=141 Identities=13% Similarity=0.234 Sum_probs=94.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+-|++.+.+.... ....+.++.+++.+++ ++.|=+-.-.+.+++... .+.+.. |
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a----~~aGA~--f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRL----ADAGGR--L 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHH----HHcCCC--E
Confidence 344578888999999999999999998753 2455678888887653 466777778888876443 335543 7
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHc--CCc
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS--GLN 338 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~--gi~ 338 (416)
+=-|....+. ... + +..++++..| ++|+.++.+..+.| +|++.+=+.. +|+.... .+.+-. .++
T Consensus 87 ivsp~~~~~v--~~~-~----~~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~---~l~~~~~~~ip 153 (206)
T PRK09140 87 IVTPNTDPEV--IRR-A----VALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIK---ALRAVLPPDVP 153 (206)
T ss_pred EECCCCCHHH--HHH-H----HHCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHH---HHHhhcCCCCe
Confidence 7667543322 222 2 2468898887 99999999999887 5999874432 4533222 333334 588
Q ss_pred EEEccC
Q 014886 339 LMIGGM 344 (416)
Q Consensus 339 ~~~~~~ 344 (416)
++.-+-
T Consensus 154 vvaiGG 159 (206)
T PRK09140 154 VFAVGG 159 (206)
T ss_pred EEEECC
Confidence 876553
No 105
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=90.23 E-value=12 Score=37.28 Aligned_cols=152 Identities=22% Similarity=0.221 Sum_probs=100.5
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------------ChhHHHHHHHHHHHhC--C-CcEEEEeCC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 237 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~~g--~-~~~L~vDaN 237 (416)
|.-.-++..+|+.+.+.++-....+ +.|-|.+|- +++---+.|.+|++.. | .++||+=
T Consensus 75 PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~-- 151 (358)
T KOG2335|consen 75 PLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIF-- 151 (358)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEec--
Confidence 4455677889999887776555555 788888872 3444556788888752 3 2345542
Q ss_pred CCCCHHHHHHHHHHHHhCCCCce-------eeecC-CCCCCHHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPV-------LFEQP-VHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~-------~iEeP-~~~~d~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
=+.++.+++++.+++.|.... +.+-+ ..+-||+.++.+++ ... +|+.+.=++.++.|+.+.++.-
T Consensus 152 --~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~~~~t 225 (358)
T KOG2335|consen 152 --VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERCLKYT 225 (358)
T ss_pred --CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHHHHHh
Confidence 457778888999998876421 12322 44567888888875 455 9999999999999999999844
Q ss_pred CCCEEEeC------CC-----CCch--HH-HHHHHHHHHHcCC
Q 014886 309 LADVINIK------LA-----KVGV--LG-ALEIIEVVRASGL 337 (416)
Q Consensus 309 a~d~v~~k------~~-----k~Gi--~~-~l~i~~~A~~~gi 337 (416)
.+|+|..- |. ..+. .+ ..+-..+|++++-
T Consensus 226 G~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 226 GADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred CCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 46777531 11 1111 12 2456778888873
No 106
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.13 E-value=2.6 Score=42.45 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC
Q 014886 213 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 292 (416)
Q Consensus 213 ~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d 292 (416)
-++|..|++.+.++|-+ -+.+|..|+.+.-+ +++++.+++ -.| ...|.+|
T Consensus 249 re~dK~rl~ll~~aGvd-vviLDSSqGnS~~q-iemik~iK~----------~yP------------------~l~ViaG 298 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVD-VVILDSSQGNSIYQ-LEMIKYIKE----------TYP------------------DLQIIAG 298 (503)
T ss_pred ccchhHHHHHhhhcCCc-EEEEecCCCcchhH-HHHHHHHHh----------hCC------------------Cceeecc
Confidence 36777788777776544 46778888887655 455554433 222 2334444
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEe-----------CCCCCc---hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 293 ESCRSLDDVKKIVKGNLADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 293 Es~~~~~d~~~~i~~~a~d~v~~-----------k~~k~G---i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
++.|.++.+.+|.+| +|++.+ +++-|| .+.-.+++++|+.+|++|+-.+.+
T Consensus 299 -NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGi 363 (503)
T KOG2550|consen 299 -NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGI 363 (503)
T ss_pred -ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCc
Confidence 456778889999988 587754 455566 455679999999999999876643
No 107
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.97 E-value=16 Score=33.86 Aligned_cols=143 Identities=13% Similarity=0.244 Sum_probs=100.0
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
+-..+.++..+.++.+.+-|++.+-|-... ..-.+.++++++.+++. ++.|=+-.-.|.+++.+. .+.|..
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a----~~aGA~-- 90 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA----ILAGAQ-- 90 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH----HHcCCC--
Confidence 334578888999999999999999998863 35667888888876442 688999999999987554 346653
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHcC-Cc
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASG-LN 338 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~g-i~ 338 (416)
|+=-|.-..+. .+.+ ++.++|+.-| +.|+.++.+..+.| +|++.+=+.. .|. +.++ .+..-+. ++
T Consensus 91 FivsP~~~~~v---~~~~----~~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~-~~ik--~l~~~~p~ip 157 (213)
T PRK06552 91 FIVSPSFNRET---AKIC----NLYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGP-SFIK--AIKGPLPQVN 157 (213)
T ss_pred EEECCCCCHHH---HHHH----HHcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCH-HHHH--HHhhhCCCCE
Confidence 77788765443 2222 2568999885 56889999999887 6999986544 353 2222 2233343 88
Q ss_pred EEEccCC
Q 014886 339 LMIGGMV 345 (416)
Q Consensus 339 ~~~~~~~ 345 (416)
+++-+-+
T Consensus 158 ~~atGGI 164 (213)
T PRK06552 158 VMVTGGV 164 (213)
T ss_pred EEEECCC
Confidence 8775543
No 108
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.35 E-value=17 Score=33.35 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=100.9
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-... ..-.+.|+.+++.+|+ +.|=+-.-.|.+++.+. -+.|.+ |
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~a----i~aGA~--F 79 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDA----AKAGSR--F 79 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHH----HHcCCC--E
Confidence 334578888999999999999999998863 3456678888887774 77888889999987554 346654 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHcCCcEE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~gi~~~ 340 (416)
+=-|.-..+. .+. + ++.++|..-| +.|+.++...++.| ++++.+=|.. +|....+|...- =--+++++
T Consensus 80 ivSP~~~~~v--i~~-a----~~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~-plp~~~l~ 148 (201)
T PRK06015 80 IVSPGTTQEL--LAA-A----NDSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSS-PLAGTFFC 148 (201)
T ss_pred EECCCCCHHH--HHH-H----HHcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHh-hCCCCcEE
Confidence 8888754433 332 2 2568999876 67899999999998 5998888864 442333332211 12378888
Q ss_pred EccCC
Q 014886 341 IGGMV 345 (416)
Q Consensus 341 ~~~~~ 345 (416)
+.+-+
T Consensus 149 ptGGV 153 (201)
T PRK06015 149 PTGGI 153 (201)
T ss_pred ecCCC
Confidence 87654
No 109
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=89.13 E-value=2.7 Score=38.55 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
-+.+++.+.++.|-+-++. .+|=.+...+. +.++++++ +.-++-|-+| ++.|.++++++++.|+ +++.- |
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~---~~p~~~vGAG-TV~~~e~a~~a~~aGA-~FivS-P- 87 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRK---EFPDLLVGAG-TVLTAEQAEAAIAAGA-QFIVS-P- 87 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHH---HHTTSEEEEE-S--SHHHHHHHHHHT--SEEEE-S-
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHH---HCCCCeeEEE-eccCHHHHHHHHHcCC-CEEEC-C-
Confidence 3578899999999999985 89999986653 34444544 2335666565 7899999999999995 66532 1
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCCchHHHH
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~ 351 (416)
++ .-++++.|+++|+++++|+++-|.+..
T Consensus 88 --~~--~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (196)
T PF01081_consen 88 --GF--DPEVIEYAREYGIPYIPGVMTPTEIMQ 116 (196)
T ss_dssp --S----HHHHHHHHHHTSEEEEEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHcCCcccCCcCCHHHHHH
Confidence 22 246789999999999999997666543
No 110
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=89.03 E-value=8.9 Score=35.65 Aligned_cols=127 Identities=16% Similarity=0.207 Sum_probs=78.6
Q ss_pred eeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC------CCCC---HHHHHH
Q 014886 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK---PQEAVE 247 (416)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN------~~w~---~~~A~~ 247 (416)
+.+..+..+.++ ++++.+.|... +=+|...-.+.+.++.+.+.+ ..+.+.+|.. .+|. .....+
T Consensus 77 v~~~GGI~~~ed----~~~~~~~Ga~~--vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e 150 (233)
T PRK00748 77 VQVGGGIRSLET----VEALLDAGVSR--VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAED 150 (233)
T ss_pred EEEcCCcCCHHH----HHHHHHcCCCE--EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHH
Confidence 333444555554 44556678654 456644444555566666654 3467788874 2341 123345
Q ss_pred HHHHHHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 248 VLEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 248 ~~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.+++.+.. .++=-.. .-.|++.++++++ .+++||...=-+.+.+|+.++.+.+.+|.+.+
T Consensus 151 ~~~~~~~~g~~-~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 151 LAKRFEDAGVK-AIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHhcCCC-EEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 67777776543 2222222 2235777777764 56899999888999999999999886787755
No 111
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=89.01 E-value=24 Score=34.40 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=86.4
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHc---CCCEEEEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQ---GFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 241 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~---G~~~~KiKvG~-----------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~ 241 (416)
.|+..++... ++++.+.+++..+. |...|-+.++. +++.-.+.+++|++.. ++.+.+=-.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 3455666666 88888877777654 68999998871 3445555677777753 2344444444467
Q ss_pred HHHHHHHHHHHHhC--CCCc-e-----------ee--ecCCC--CC----------CHHHHHHhHHhhhccC--CCeEEe
Q 014886 242 PQEAVEVLEKLYEM--GVTP-V-----------LF--EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAA 291 (416)
Q Consensus 242 ~~~A~~~~~~L~~~--~l~~-~-----------~i--EeP~~--~~----------d~~~~~~l~~~~r~~~--~iPIa~ 291 (416)
.++..++++.+.+. ++.- . -+ +.|.- .. .+..++.++. ++++. ++||.+
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 66667788877766 3210 0 01 22211 11 1223333332 23345 499999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
-=-+.+.+|+.+++..| +|.+|+=-+-
T Consensus 249 ~GGI~s~~da~e~l~aG-A~~Vqv~ta~ 275 (294)
T cd04741 249 VGGVLDGRGAFRMRLAG-ASAVQVGTAL 275 (294)
T ss_pred eCCCCCHHHHHHHHHcC-CCceeEchhh
Confidence 88899999999999987 5999886543
No 112
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.77 E-value=7.9 Score=37.18 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=69.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeecCCCCC------------CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD------------DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~------------d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
|-.|+.++.+++++.|++.|++ +||==++.. +.+.++++.+..+.++.+-....-...+..++...
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHH
Confidence 3456899999999999999985 999765432 14555666542111223333333333456777776
Q ss_pred HHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccC
Q 014886 305 VKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 305 i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
.+.+ +|++.+-....-+..+++++..|+++|+.+.++-+
T Consensus 92 ~~~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 92 SGSV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred hcCC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 6655 78877754433377889999999999999877643
No 113
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=88.76 E-value=17 Score=35.96 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=94.0
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC---Ch--------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK---NL--------KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~---~~--------~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
.|+.+++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.+++||+.. ++.+.+=-...++ +
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~--~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFS--A 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCcc--C
Confidence 345566666778888888888878899999999862 11 12246677888753 3445544433332 4
Q ss_pred HHHHHHHHHhCCCCce-----eeecCCCCC------C---------HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 245 AVEVLEKLYEMGVTPV-----LFEQPVHRD------D---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~-----~iEeP~~~~------d---------~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
...+++.+++.++.-. +..-....+ . ...++.+++ +++..++||.+.=-+.+.+|+.++
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~-v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI-LSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH-HHcccCCCEEEECCCCCHHHHHHH
Confidence 5567777776554210 111111000 0 011222222 234668999998899999999999
Q ss_pred HHcCCCCEEEeCCCCC--c---hHH-HHHHHHHHHHcCCc
Q 014886 305 VKGNLADVINIKLAKV--G---VLG-ALEIIEVVRASGLN 338 (416)
Q Consensus 305 i~~~a~d~v~~k~~k~--G---i~~-~l~i~~~A~~~gi~ 338 (416)
+..| +|.+|+=-+-. | +.. ...+.++.+++|..
T Consensus 256 l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 256 LLAG-ADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHcC-CCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 9987 59998864432 3 222 23456667777764
No 114
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=88.71 E-value=7.6 Score=38.61 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeec--------------CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
..|+.++.+++++.|++.|+. .||= +....+++.++++.+... +..+-..+.=...+..+++.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHHH
Confidence 456899999999999999985 8998 444456777777654321 22222223223457889999
Q ss_pred HHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEcc
Q 014886 304 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 304 ~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~ 343 (416)
+.+.| +|.+.+-.. +. .....+.+.+|++.|..+...-
T Consensus 96 a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 96 AYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEE
Confidence 88887 788886543 33 5567889999999999976543
No 115
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.64 E-value=6.8 Score=36.41 Aligned_cols=124 Identities=18% Similarity=0.259 Sum_probs=79.4
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-C-CcEEEEeCCC------CC---CHHHHHHH
Q 014886 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDANE------GY---KPQEAVEV 248 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~-~~~L~vDaN~------~w---~~~~A~~~ 248 (416)
...+..++++ ++++.+.|... +=+|...-.|.+.++.+.+.+ . .+.+.+|... +| +..+..++
T Consensus 78 ~~GgI~~~e~----~~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T cd04732 78 VGGGIRSLED----IERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEEL 151 (234)
T ss_pred EeCCcCCHHH----HHHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHH
Confidence 3344456544 45566678654 456755556777788887774 3 4666777542 23 12344567
Q ss_pred HHHHHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 249 LEKLYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
++.+++.+.. .++=-.+ ...+++.++++++ .+++||...=-+.+.+|+.++++.| +|.+.+
T Consensus 152 ~~~~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~v 218 (234)
T cd04732 152 AKRFEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKELG-VAGVIV 218 (234)
T ss_pred HHHHHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 7778777654 3333333 2235677777764 6789999999999999999999876 566654
No 116
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=88.50 E-value=20 Score=33.01 Aligned_cols=142 Identities=15% Similarity=0.269 Sum_probs=100.7
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-... ..-.+.++.+++.+|+ +.|=+-.-.|.+++.+.. +.|-+ |
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~----~aGA~--F 83 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAV----DAGAQ--F 83 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHH----HcCCC--E
Confidence 334578889999999999999999988853 4566778888888874 788888999999976553 35643 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHH-HHHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALE-IIEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~-i~~~A~~~gi~~ 339 (416)
+=-|....+ ..+.+ ++.++|..-| +.|+.++...++.| +|++.+=|.. .|....+| +..-- -++++
T Consensus 84 ivsP~~~~~---v~~~~----~~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~ 151 (204)
T TIGR01182 84 IVSPGLTPE---LAKHA----QDHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRF 151 (204)
T ss_pred EECCCCCHH---HHHHH----HHcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcE
Confidence 877765332 22322 2568998884 78999999999998 5998888866 45233332 22222 47888
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++.+-+
T Consensus 152 ~ptGGV 157 (204)
T TIGR01182 152 CPTGGI 157 (204)
T ss_pred EecCCC
Confidence 886654
No 117
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.39 E-value=20 Score=35.47 Aligned_cols=135 Identities=18% Similarity=0.239 Sum_probs=85.4
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC----------Ch-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~----------~~-~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
+|+.+++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.+++|++.. ++.+.+=-+..+ .+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 455667777788888888888888899999997651 11 12345667777753 355665544434 34
Q ss_pred HHHHHHHHHhCCCCceeeec--CCC--CCCHH------------------HHHHhHHhhhccCCCeEEeCCCCCCHHHHH
Q 014886 245 AVEVLEKLYEMGVTPVLFEQ--PVH--RDDWE------------------GLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEe--P~~--~~d~~------------------~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~ 302 (416)
..++++.+++.++. .|-- -+. .-|++ .++.+++ +++..++||.+.=-+.+..|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~-~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI-LSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH-HHhhcCCCEEEECCCCCHHHHH
Confidence 55777888877653 2211 000 01111 1222222 2346689999988999999999
Q ss_pred HHHHcCCCCEEEeCC
Q 014886 303 KIVKGNLADVINIKL 317 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~ 317 (416)
+++..| +|.+|+=-
T Consensus 256 e~l~aG-A~~V~v~t 269 (334)
T PRK07565 256 KMLLAG-ADVVMIAS 269 (334)
T ss_pred HHHHcC-CCceeeeh
Confidence 999988 69988753
No 118
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.36 E-value=17 Score=33.50 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCEEEEecCC--Ch--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee-----
Q 014886 192 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 262 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~--~~--~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i----- 262 (416)
++++.+.+.|...+=+-... .+ +...+.++.+++. +++.++++.+ +.+++. .+.+.+.. |+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~----~a~~~G~d--~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGL----AAQKLGFD--FIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHH----HHHHcCCC--EEEcCCc
Confidence 44667778898866654432 12 4555677788876 7888988876 666653 34455543 33
Q ss_pred --ecC---CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 --EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 --EeP---~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.. ....+++.+++++. ..++||..+=-+.+..++.++++.| +|++.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 211 12234555666653 5689999988999999999999988 688866
No 119
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=88.12 E-value=8.9 Score=36.60 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=74.1
Q ss_pred HHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC-----------C---CHHHHHHHHHHHHhCCC
Q 014886 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-----------Y---KPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN~~-----------w---~~~~A~~~~~~L~~~~l 257 (416)
++++.+.|+..+ -+|...-++...++.+.+.++ .+.+.+|...+ | +.....++++.+++.++
T Consensus 89 ~~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~ 166 (258)
T PRK01033 89 AKKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGA 166 (258)
T ss_pred HHHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCC
Confidence 455566788754 455434456677777777643 46788896543 3 12234677788888765
Q ss_pred Cceee------ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHH-HcCCCCEEE
Q 014886 258 TPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV-KGNLADVIN 314 (416)
Q Consensus 258 ~~~~i------EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i-~~~a~d~v~ 314 (416)
. ..+ ++...-.|++.++++++ ..++||.+.=-+.+.+|+.+++ +.| +|.+.
T Consensus 167 ~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~G-vdgVi 224 (258)
T PRK01033 167 G-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLG-ADAAA 224 (258)
T ss_pred C-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCC-CCEEE
Confidence 4 233 23333346787888764 6789999998999999999998 455 56554
No 120
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=88.11 E-value=13 Score=36.39 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=71.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHh--CCCcE--EEEeCCCCCCHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSS--FILDANEGYKPQE 244 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~--g~~~~--L~vDaN~~w~~~~ 244 (416)
|..++.++...++++.+.|.-.+-|. .| .+.++=+++|++++++ .+++- -|.|+......++
T Consensus 87 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 87 GYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 44455557777888999999888763 22 1456667889888886 34543 3679987778999
Q ss_pred HHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeE
Q 014886 245 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (416)
Q Consensus 245 A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPI 289 (416)
|++.++...+.|-...|+|-|.. .+.++++.+ +.+.|+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~---~~ei~~~~~----~~~~P~ 204 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLD---VEEMKRVRD----EIDAPL 204 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHHHHH----hcCCCe
Confidence 99999999988877679987644 455677764 455666
No 121
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.40 E-value=11 Score=37.50 Aligned_cols=125 Identities=10% Similarity=0.124 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC----------CChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEK 251 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG----------~~~~~d~~~v~avr~~g~----~~~L~vDaN~~w~~~~A~~~~~~ 251 (416)
..++..+.++++. .+...+-+.++ .+.+.-.+.+++||+... ++.+.+=-+-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 4577777777664 46788888775 133455567888998643 36777666666888888899999
Q ss_pred HHhCCCCce-----e-----eecCCC-------------CCCHHHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHHHH
Q 014886 252 LYEMGVTPV-----L-----FEQPVH-------------RDDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 252 L~~~~l~~~-----~-----iEeP~~-------------~~d~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~i~ 306 (416)
+++.++.-. + ++.+.. +-.++..++++ ++. ++||.+-=-+.+.+|+.+++.
T Consensus 234 l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~----~~~~~~ipIig~GGI~s~eda~e~l~ 309 (344)
T PRK05286 234 ALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY----KELGGRLPIIGVGGIDSAEDAYEKIR 309 (344)
T ss_pred HHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHHHHHHH
Confidence 988765311 1 111100 00122223333 345 689998888999999999998
Q ss_pred cCCCCEEEeC
Q 014886 307 GNLADVINIK 316 (416)
Q Consensus 307 ~~a~d~v~~k 316 (416)
.| +|.||+-
T Consensus 310 aG-Ad~V~v~ 318 (344)
T PRK05286 310 AG-ASLVQIY 318 (344)
T ss_pred cC-CCHHHHH
Confidence 77 6877663
No 122
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=87.35 E-value=17 Score=34.16 Aligned_cols=130 Identities=20% Similarity=0.209 Sum_probs=82.2
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCC-----------CCC--
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDAN-----------EGY-- 240 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN-----------~~w-- 240 (416)
+|+.+..++.+.+++ +++.+.|...+ -+|...-++.+.+..+.+.++ .+.+.+|+. .+|
T Consensus 72 ~pv~~~GGI~s~~d~----~~~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~ 145 (243)
T cd04731 72 IPLTVGGGIRSLEDA----RRLLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRK 145 (243)
T ss_pred CCEEEeCCCCCHHHH----HHHHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCce
Confidence 344555566676554 44455687654 455444455566666666543 477889865 234
Q ss_pred -CHHHHHHHHHHHHhCCCCceee---ec--CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 241 -KPQEAVEVLEKLYEMGVTPVLF---EQ--PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 241 -~~~~A~~~~~~L~~~~l~~~~i---Ee--P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+..+..++++.+++.++...-+ .. .....+++.++++.+ .+++|+.+.=-+.+++++.++++...+|.+.
T Consensus 146 ~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv~ 221 (243)
T cd04731 146 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAAL 221 (243)
T ss_pred ecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEEE
Confidence 2445678888888877641111 11 112235666677653 5789999988899999999999875577776
Q ss_pred e
Q 014886 315 I 315 (416)
Q Consensus 315 ~ 315 (416)
+
T Consensus 222 v 222 (243)
T cd04731 222 A 222 (243)
T ss_pred E
Confidence 5
No 123
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=87.27 E-value=14 Score=34.32 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=75.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CC-CcEEEEeCC------CCCCH---HHHHHHHHH
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDAN------EGYKP---QEAVEVLEK 251 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~-~~~L~vDaN------~~w~~---~~A~~~~~~ 251 (416)
+..+.++ ++++.+.|...+ =+|...-.|.+.+..+.+. +. .+-+.+|.. .+|.. ....++++.
T Consensus 80 GI~~~ed----~~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 153 (230)
T TIGR00007 80 GIRSLED----VEKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKR 153 (230)
T ss_pred CcCCHHH----HHHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHH
Confidence 4445444 455667888754 4554344566667776665 43 366677765 23421 233567777
Q ss_pred HHhCCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 252 LYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 252 L~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.++. .++=-.+ ...|++.++++++ ..++||.+.=-+.+.+|+.++.+.| +|.+.+
T Consensus 154 ~~~~g~~-~ii~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 154 LEELGLE-GIIYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred HHhCCCC-EEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 7777654 2332222 2235676777764 5789999998999999999988876 577655
No 124
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=87.14 E-value=16 Score=35.42 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcE----EE-E----e----CCCCC-CHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSS----FI-L----D----ANEGY-KPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~----L~-v----D----aN~~w-~~~~A~~~~~~L~~ 254 (416)
+.+.++++.||+.+-+... .+.++.++..+.+.+. .-++. |- + | ....+ ++++|.+|++...-
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~Tgv 167 (283)
T PRK07998 88 EDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGC 167 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCc
Confidence 3455667889999999766 4677888887777652 11211 11 1 1 11224 59999999987642
Q ss_pred CCCCc-------eeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 MGVTP-------VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ~~l~~-------~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
--+.+ .|-. |.-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 168 D~LAvaiGt~HG~Y~~---p~l~~~~l~~I~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi-~KiNi~ 229 (283)
T PRK07998 168 DMLAVSIGNVHGLEDI---PRIDIPLLKRIAE----VSPVPLVIHGGSGIPPEILRSFVNYKV-AKVNIA 229 (283)
T ss_pred CeeehhccccccCCCC---CCcCHHHHHHHHh----hCCCCEEEeCCCCCCHHHHHHHHHcCC-cEEEEC
Confidence 10100 1322 4567888888875 67999884 566667788999999884 444553
No 125
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=86.93 E-value=35 Score=33.95 Aligned_cols=129 Identities=19% Similarity=0.311 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
+++++..+++++....-...+-+-+|.. +.|.+|++++.++++.. -|.||..++++... ++.++.+.+. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~-i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEHF-VEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHhh-----C--
Confidence 4677766666554333334455566632 58999999999986554 47789999987543 3444444331 1
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-------CCC----Cc---hHHHHHHH
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-------LAK----VG---VLGALEII 329 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k-------~~k----~G---i~~~l~i~ 329 (416)
| +.+|..| ++.|.++.+++++.| +|++.+- .++ +| ++...+++
T Consensus 149 -p--------------------~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 -P--------------------EHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred -C--------------------CCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 1 2445444 567889999999988 5887543 122 12 23345667
Q ss_pred HHHHHcCCcEEEccCC
Q 014886 330 EVVRASGLNLMIGGMV 345 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~ 345 (416)
+.|+.++++++..+-+
T Consensus 206 ~aa~~~~v~VIaDGGI 221 (343)
T TIGR01305 206 DAAHGLKGHIISDGGC 221 (343)
T ss_pred HHhccCCCeEEEcCCc
Confidence 7777778898876654
No 126
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.88 E-value=13 Score=34.66 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=76.1
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC-C-cEEEEeCCCC------------C---CH
Q 014886 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-D-SSFILDANEG------------Y---KP 242 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~-~-~~L~vDaN~~------------w---~~ 242 (416)
+..+..+.+++ +++.+.|+..+ -+|...-.+.+.++.+.+.++ . +.+.+|.... | +.
T Consensus 79 ~~ggi~~~~d~----~~~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~ 152 (232)
T TIGR03572 79 VGGGIRSLEDA----KKLLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATG 152 (232)
T ss_pred EECCCCCHHHH----HHHHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCC
Confidence 33444455543 34556787764 455434456677777777643 3 5667886542 3 23
Q ss_pred HHHHHHHHHHHhCCCCceeeec-----CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.++.++++.+++.++....+-. -....+++.++++++ ..++||.+.=-+.+..++.+.+....+|.+.+
T Consensus 153 ~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 153 RDPVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 4467888888888764111111 112234666777653 67899999888999999999444434677654
No 127
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=86.55 E-value=36 Score=33.72 Aligned_cols=117 Identities=21% Similarity=0.295 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee---c
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---Q 264 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---e 264 (416)
+..+.++.+++.|.+.+-+... .+.+.-.+.++.+++.+|++.+++ ...-+.++|.+. .+.+.. +|= -
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l----~~aGaD--~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDL----IDAGAD--GVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHH----HhcCCC--EEEECCC
Confidence 3456677788899998887764 233455678899999888888887 333566766544 345543 321 0
Q ss_pred C-----------CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
| ....++..+..+.+.. ...++||.++--+.+..++.+++..| +|.+++
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~Vmi 225 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVML 225 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEe
Confidence 1 1122444455554322 24579999999999999999999988 488776
No 128
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=86.43 E-value=12 Score=35.16 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=78.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC------CCCC--HHHHHHHHHHH
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK--PQEAVEVLEKL 252 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN------~~w~--~~~A~~~~~~L 252 (416)
.++.+.++ ++++.+.|.. |+-+|...-.|.+.++.+-+.+ ..+.+.+|.. .+|+ ..+..++++.+
T Consensus 82 GGirs~ed----v~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l 155 (241)
T PRK14024 82 GGIRDDES----LEAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERL 155 (241)
T ss_pred CCCCCHHH----HHHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHH
Confidence 34445544 5667778887 4556644445666666666653 3455667763 2564 33557788888
Q ss_pred HhCCCCceee------ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 014886 253 YEMGVTPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 315 (416)
Q Consensus 253 ~~~~l~~~~i------EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--~a~d~v~~ 315 (416)
++.++. .++ ++-....|++.++++.+ ..++||.+.=-+.+.+|+.++.+. ..+|.+.+
T Consensus 156 ~~~G~~-~iiv~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 156 DSAGCS-RYVVTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred HhcCCC-EEEEEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 888764 222 33333346888888764 578999998889999999988642 23666654
No 129
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=86.36 E-value=23 Score=32.79 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=80.5
Q ss_pred HHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhC-CCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCC
Q 014886 218 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 295 (416)
Q Consensus 218 ~~v~avr~~g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~ 295 (416)
+.++.+++.. ..+.+-++ +.+.++.++.++.|.+. + ..+||=|+...-++..++|+ +.++++.+. .+
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~--~~~iKIP~T~~gl~ai~~L~-----~~gi~v~~T-~V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGG--NVVVKIPVTEDGLKAIKKLS-----EEGIKTNVT-AI 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCC--CEEEEEcCcHhHHHHHHHHH-----HcCCceeeE-Ee
Confidence 4566666653 33555565 45777777777777665 4 25999999874444445554 237888766 47
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCCC---c---hHHHHHHHHHHHHcCCc---EEEccC
Q 014886 296 RSLDDVKKIVKGNLADVINIKLAKV---G---VLGALEIIEVVRASGLN---LMIGGM 344 (416)
Q Consensus 296 ~~~~d~~~~i~~~a~d~v~~k~~k~---G---i~~~l~i~~~A~~~gi~---~~~~~~ 344 (416)
++..+.....+.| ++++.|-+.++ | +.-..++..+++.+|++ ++.+..
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 8999999999998 59999988883 3 44467899999999988 555554
No 130
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.31 E-value=30 Score=32.59 Aligned_cols=170 Identities=24% Similarity=0.260 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCh------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCc
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNL------KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~------~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (416)
+.++..+.++.+.+.|+..+-+-.+... +.+.+.++.+++.+++.++.+.+... .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6777778888888889888777666444 67788899999887777776655443 3445556666653
Q ss_pred eeeecCCCCC--------------CHHHHHHhHHhhhccCCCeEEeCC-CCC----CHHHH----HHHHHcCCCCEEEeC
Q 014886 260 VLFEQPVHRD--------------DWEGLGHVSHIAKDKFGVSVAADE-SCR----SLDDV----KKIVKGNLADVINIK 316 (416)
Q Consensus 260 ~~iEeP~~~~--------------d~~~~~~l~~~~r~~~~iPIa~dE-s~~----~~~d~----~~~i~~~a~d~v~~k 316 (416)
++-=+++.. +++...+..+.++ +.++.+...= ..+ ++..+ +.+.+.| +|.+.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 333333332 2222222221122 4466666542 333 33333 3344556 6777776
Q ss_pred CCCCc-hH--HHHHHHHH-HHHcC-CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 317 LAKVG-VL--GALEIIEV-VRASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 317 ~~k~G-i~--~~l~i~~~-A~~~g-i~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
-+ .| .+ +..+++.. .+..+ +++-+|+-...+++. +-.++|......++|
T Consensus 167 Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~--an~laA~~aG~~~id 220 (265)
T cd03174 167 DT-VGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAV--ANSLAALEAGADRVD 220 (265)
T ss_pred hh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHH--HHHHHHHHcCCCEEE
Confidence 54 36 44 34444444 44455 778887764444443 333444333344444
No 131
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=86.25 E-value=13 Score=36.96 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=70.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeec--------------CCCCCCHHHHHHhHHhhhccCCCeEE--eCCCCCCHHH
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDD 300 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d 300 (416)
+..|+.++.+++++.|.+.|+. .||= |....+++.++.++.. ..+..++ +.=...+..+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHH
Confidence 3456899999999999999985 8887 1222356666666432 2234444 3333457889
Q ss_pred HHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 301 VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 301 ~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+..+.+.| +|++.+-. .+. ....++.+.+|+++|+.+...-+
T Consensus 94 l~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 94 LKMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99988887 68877653 334 55678899999999999876443
No 132
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=85.92 E-value=47 Score=34.99 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee---cCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 266 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---eP~ 266 (416)
.+.++.+++.|...+-|-.. .+...-++.|+.+|+.+|++.+++ ..-.|.++|.... +.|.. +|= -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~----~aGad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLI----DAGAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHH----HcCCC--EEEECCcCC
Confidence 67788889999999988874 222334678999999888888877 4556777765543 45653 552 121
Q ss_pred C-----------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 267 H-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 267 ~-----------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
. ..++..+.++++.. ++.++||..|--+.+..|+.+++..|+ |.+++--..
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~GA-~~Vm~G~~~ 376 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALGA-DCVMLGSLL 376 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcCC-CEEEECchh
Confidence 0 11333434443322 356899999999999999999999984 888774433
No 133
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.91 E-value=17 Score=34.23 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCCC------CCCH---HHHHHHHHHHHhCCCCcee
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN~------~w~~---~~A~~~~~~L~~~~l~~~~ 261 (416)
+.++++.+.|...+ -+|...-+|.+.++.+.+.+ ..+-+.+|+.. +|.. -+..++++.++++++. ..
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~-~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG-GI 165 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC-EE
Confidence 34566777887664 55654456788888888885 45778899843 3532 2335677777777653 33
Q ss_pred eecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 262 FEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 262 iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
|=--+.. .|++-++++.+ .+++||...=-+.+.+|+.++.+.| ++.+.+
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~viv 220 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAAII 220 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 3333332 25666677653 5789999988899999999999877 455543
No 134
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=85.31 E-value=30 Score=33.60 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEE------e-c---C-------CChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKL------K-V---G-------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 242 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~Ki------K-v---G-------~~~~~d~~~v~avr~~--g~~~~L--~vDaN-~~w~~ 242 (416)
.++..+...++++.+.|...+-| | . | .+.++=+++|++++++ ++++.| +.|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 57888888899999999998888 1 1 1 2456667788888875 455544 56764 35679
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhcc-CCCeEEe
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAA 291 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~-~~iPIa~ 291 (416)
++|++.+++..+.|-...|+|-+. .+.+.++++.+.++.. -++|+..
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~~--~~~~ei~~~~~~~~~~~p~~pl~~ 216 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSRK--KDPDEILEFARRFRNHYPRTPLVI 216 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHHhhhhCCCCCEEE
Confidence 999999999999887767998422 2355566665422110 0357654
No 135
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=85.28 E-value=10 Score=36.38 Aligned_cols=103 Identities=21% Similarity=0.356 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeec--CC-CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC---CCE
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL---ADV 312 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a---~d~ 312 (416)
.++.++.+++++.|.+.|+. .||= |. .+++++.++.+.+ ...++.+..== -.+..++..+.+.+. +|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~---~~~~~~~~~l~-r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIAR---EVLNAEICGLA-RAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHH---hCCCCEEEEEc-cCCHhhHHHHHHhCCCCCCCE
Confidence 56899999999999999985 8887 54 4556666666653 12345554311 134678888887763 677
Q ss_pred EEeCCC----------CCc----hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 313 INIKLA----------KVG----VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 313 v~~k~~----------k~G----i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
+.+=.+ +++ +....+++..|+++|+.+.++++..+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 766322 122 23456789999999999998876543
No 136
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=84.96 E-value=18 Score=33.15 Aligned_cols=143 Identities=16% Similarity=0.298 Sum_probs=93.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-... ..-.+.|+.+++.+|+ +.|=+-.-.|.+++.+..+ .|.+ |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~----aGA~--F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIA----AGAQ--F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHH----HT-S--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHH----cCCC--E
Confidence 445678888899999999999999988863 3446778888888886 5677888889988766543 4543 7
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC-chHHHHHHHHHHHHcCCcEE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~-Gi~~~l~i~~~A~~~gi~~~ 340 (416)
+=-|.-..+ +.+.+. +.++|..-| +.|+.++..+++.| ++++.+=|... |....+|...- ---+++++
T Consensus 84 ivSP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~-p~p~~~~~ 152 (196)
T PF01081_consen 84 IVSPGFDPE---VIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRG-PFPDLPFM 152 (196)
T ss_dssp EEESS--HH---HHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHT-TTTT-EEE
T ss_pred EECCCCCHH---HHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhc-cCCCCeEE
Confidence 878864333 223332 458898875 68999999999998 59998888764 74444443321 12368888
Q ss_pred EccCC
Q 014886 341 IGGMV 345 (416)
Q Consensus 341 ~~~~~ 345 (416)
+.+-+
T Consensus 153 ptGGV 157 (196)
T PF01081_consen 153 PTGGV 157 (196)
T ss_dssp EBSS-
T ss_pred EcCCC
Confidence 86644
No 137
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=84.93 E-value=21 Score=37.57 Aligned_cols=109 Identities=17% Similarity=0.341 Sum_probs=70.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC----CCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHH
Q 014886 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 231 ~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i 305 (416)
+|+|-+--+-+.++ .+.++.|-+.++. .||=-... ..++.++++++ .. ++||.+| ++.|.++++.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 55554433334444 6777788787864 67743321 12345566553 33 6899998 889999999999
Q ss_pred HcCCCCEEEeCCC-----------CCc---hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 306 KGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 306 ~~~a~d~v~~k~~-----------k~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+.| +|++.+-.+ -+| ++...++++.|+++|++++..+-+.++
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~ 356 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS 356 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH
Confidence 998 599865421 133 233457888899999999995444343
No 138
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=84.40 E-value=13 Score=35.25 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCC-------------C--CHHHHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG-------------Y--KPQEAVEVLE 250 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~-------------w--~~~~A~~~~~ 250 (416)
+++++...++++.+.|-..+||.=+ .+-+++|+++++++==+-=++|+... . ..+++++-++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~---~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGG---EWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCc---HHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 5688888899999999999998854 34567888888874112335777311 1 2568889999
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
.+++.|....|+|-+ +.+..+++++ +.++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999988776799965 3555677764 67889875
No 139
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.28 E-value=9.5 Score=34.73 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecC--CC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 313 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP--~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~--d~~~~i~~~a~d~v 313 (416)
..+.++|.++++.+ +.++ .|||-. +. +.-++.++.+++ ...+..+..|=.+.+.. ++..+.+.| +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v--~~iev~~~l~~~~g~~~i~~l~~---~~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYV--DIIEIGTPLIKNEGIEAVKEMKE---AFPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCe--eEEEeCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 35789999999999 6676 499995 32 223445555553 12356777776555654 677888888 5888
Q ss_pred EeCCCCCchHHHHHHHHHHHHcCCcEEEc
Q 014886 314 NIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 314 ~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~ 342 (416)
.+...- +.....++.+.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 776543 2223467888999999999875
No 140
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=84.11 E-value=8.5 Score=35.51 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeec---CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+++++..++...+-+++.+.|+|. ...+-+.+-.+++++ .+++|+..|=-+.+.++++++++.| +|.+.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 6789999999999988888789998 333345566666654 6689999999999999999998887 687754
No 141
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=84.09 E-value=12 Score=36.23 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=46.1
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++..+||++. ....+.+.+.++++.| ++.+|+|-.... +..++++.++|+++|+++-
T Consensus 71 ~~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 71 KQAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3568898854 3457888899999987 799999998875 3457899999999999873
No 142
>PLN02411 12-oxophytodienoate reductase
Probab=83.80 E-value=27 Score=35.51 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeC----C-
Q 014886 190 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDA----N- 237 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG~---------------------~~----~~d~~~v~avr~~-g~~-~~L~vDa----N- 237 (416)
..+.|+++++.||..|-|+.+. ++ .--++.|++||++ +++ +-+++-. +
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 3556677788999999999751 12 1235678999997 666 3344432 1
Q ss_pred --CCCCHHHHHHHHHHHHhC------CCCceeeecCCC-----------CCCHH-HHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 238 --EGYKPQEAVEVLEKLYEM------GVTPVLFEQPVH-----------RDDWE-GLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 238 --~~w~~~~A~~~~~~L~~~------~l~~~~iEeP~~-----------~~d~~-~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
..-+.++++.+.+.|+.. ++ .+|+==.. ..... ....+.+.+++..++||..-=.+ +
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 122356677777777752 23 23331110 00000 01112222334677888876666 5
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
.++..++++.|.+|.|-+
T Consensus 324 ~~~a~~~l~~g~aDlV~~ 341 (391)
T PLN02411 324 RELGMQAVQQGDADLVSY 341 (391)
T ss_pred HHHHHHHHHcCCCCEEEE
Confidence 678888999998998744
No 143
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=83.67 E-value=15 Score=35.77 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=47.3
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|-+..- +..++++.++|+++|+.+
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~V 131 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3668999966 4566899999999987 799999999874 556899999999999987
No 144
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=83.55 E-value=13 Score=35.97 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=47.2
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++- ....+.+++.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+
T Consensus 66 ~~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~V 126 (276)
T cd00947 66 ERASVPVALHLDHGSSFELIKRAIRAG-FSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSV 126 (276)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4668999965 4556889999999998 899999999874 556899999999999987
No 145
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=83.42 E-value=44 Score=32.51 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+++...+.++.+++.++. .|+==+.. ..++.++++++ ++++||..-+. .+.++.+.+.+.| +|++.
T Consensus 127 ~~~~~~~~i~~~~~~g~~--~i~l~~~~p~~~~~~~~~~i~~l~~----~~~~pvivK~v-~s~~~a~~a~~~G-~d~I~ 198 (299)
T cd02809 127 DREITEDLLRRAEAAGYK--ALVLTVDTPVLGRRLTWDDLAWLRS----QWKGPLILKGI-LTPEDALRAVDAG-ADGIV 198 (299)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCCHHHHHHHHH----hcCCCEEEeec-CCHHHHHHHHHCC-CCEEE
Confidence 455555555665555543 44422111 12455666653 67899998764 7788898888887 68877
Q ss_pred eCCC--C---CchHHHHHHHHHHHHc--CCcEEEccCCchHHHHHHHHH
Q 014886 315 IKLA--K---VGVLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAGH 356 (416)
Q Consensus 315 ~k~~--k---~Gi~~~l~i~~~A~~~--gi~~~~~~~~es~ig~~a~~h 356 (416)
+.-. + .|...+..+.++++.. +++++..+-+.++.....++.
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~ 247 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA 247 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 6431 1 2333344455555655 499988777766655544443
No 146
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=82.98 E-value=39 Score=31.15 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEEEecCC--Chh--HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee--ec-
Q 014886 192 ELASKYRKQGFTTLKLKVGK--NLK--EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQ- 264 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~--~~~--~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i--Ee- 264 (416)
++++.+.+.|-..+=+.... .+. ...+.++++++.+ ++.++++.+ +++++.+ +.+.++. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea~~----a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEALN----AAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHHHH----HHHcCCC--EEEccCc
Confidence 45677778898876664431 122 5556777888877 788888654 6676533 4445653 44 20
Q ss_pred ---C----CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 265 ---P----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 265 ---P----~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ ....+++.++++++ ..++||...=-+.+.+++.++++.| +|.+.+
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 0 01124555666653 5689999988899999999999988 788765
No 147
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=82.84 E-value=29 Score=33.03 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecCCCC---CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
..|+.++.+++++.|.+.|+. .||=-+|. .+++.++.+.+ ...+..+..- .-.+..++..+.+.| ++.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 357899999999999999985 89984442 23455555543 2334545433 224678888888876 68777
Q ss_pred eCCCCC--------c------hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 315 IKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 315 ~k~~k~--------G------i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+=.+.. | +....+++..|+++|+.+.++++..+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 135 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR 135 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC
Confidence 632211 1 234567899999999999888876543
No 148
>PRK06801 hypothetical protein; Provisional
Probab=82.39 E-value=20 Score=34.80 Aligned_cols=56 Identities=11% Similarity=0.232 Sum_probs=45.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++. ....+.+.+.+.++.| ++.+++|-+..- +..++++.++|+.+|+.+
T Consensus 71 ~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 71 ARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4678899865 3466788899999987 799999988764 445789999999999987
No 149
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=82.34 E-value=16 Score=35.38 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=46.1
Q ss_pred ccCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~-iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.+ +||++. ....+.+.+++.++.| ++.+++|.+... +..+.++.++|+.+|+.+.
T Consensus 70 ~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 70 ERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3556 899976 5556788889999887 799999999886 3347899999999999764
No 150
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.25 E-value=14 Score=35.95 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=47.5
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 71 RKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3668999976 4466789999999998 799999999875 5568999999999999873
No 151
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=82.23 E-value=44 Score=34.66 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee---ec
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF---EQ 264 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i---Ee 264 (416)
+..+.++.+++.|...+-|-.. .+-..-.+.|+.+|+.+|+..+++ -...|.++|....+ .|.. +| =-
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~----aGad--~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALID----AGAD--GLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHH----hCCC--EEEECCC
Confidence 3456677788899999988874 222445566888888888887776 44557777765544 4443 33 11
Q ss_pred C-----------CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 265 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 265 P-----------~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
| +-..++..+.++++.. +..++||.+|--+.+..|+.+++..|+ +.+++-
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~GA-~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAGA-DAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEEC
Confidence 2 1112334444443322 256899999999999999999999984 887763
No 152
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=82.16 E-value=24 Score=35.77 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=69.4
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeec--CCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+| .|+.++-+++++.|.+.|+. .||= |... ++++.++.+.+ ......++.- +-....++..+++.
T Consensus 14 DG~Q~~~~~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 87 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDC 87 (378)
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhC
Confidence 5565 47899999999999999985 8996 5333 34455666543 2223334332 33457889988888
Q ss_pred CCCCEEEeCCCC--------Cc------hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 308 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 308 ~a~d~v~~k~~k--------~G------i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
| ++.+.+=... .| +....+.+.+|++.|+.+.++++..+
T Consensus 88 g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 88 G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 7 5776653221 11 23355689999999999988765433
No 153
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=81.71 E-value=51 Score=34.50 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee----
Q 014886 189 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (416)
+..+.++.++++|.+.+=+... ...+.-++.++.+++.+|++.+++| ..-|.+++..+. +.|.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~----~~G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLL----EAGAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHH----HhCCC--EEEECCc
Confidence 3456778888999999888876 3346677789999988999999983 244666665544 34432 333
Q ss_pred -------cCC---CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 264 -------QPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 264 -------eP~---~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.-+ -........++.+.++ ..++||.+|--+.+..|+.+.+..|+ |.+.+
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~GA-~~vm~ 356 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAGA-SNVMV 356 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCC-CEEee
Confidence 111 1112222223322222 44899999999999999999999985 66654
No 154
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=81.67 E-value=21 Score=34.72 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EEE-E--------eCCCCC-CHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SFI-L--------DANEGY-KPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L~-v--------DaN~~w-~~~~A~~~~~~L~~ 254 (416)
+.+.++++.||+.+-+... .+.++.+++.+.+.+. .-++ .|- | +...-| ++++|.+|.++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 3455678899999999977 5778888888877652 1111 110 1 112226 59999999987631
Q ss_pred ----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.|. |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~Gi-~KiNi~ 233 (285)
T PRK07709 171 DCLAPALGSVHGP---YKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLGT-SKINVN 233 (285)
T ss_pred CEEEEeecccccC---cCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 222 43445 457777888764 67899985 456666788999999884 334554
No 155
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=81.55 E-value=17 Score=34.35 Aligned_cols=124 Identities=14% Similarity=0.142 Sum_probs=85.1
Q ss_pred cCCC-HHHHHHHHHHHHHcCCCEEEEe---cC------CChhHHHHHHHHHHHh--CCCcE--EEEeCCC--CCCHHHHH
Q 014886 183 PIVS-PAEAAELASKYRKQGFTTLKLK---VG------KNLKEDIEVLRAIRAV--HPDSS--FILDANE--GYKPQEAV 246 (416)
Q Consensus 183 ~~~~-~~~~~~~~~~~~~~G~~~~KiK---vG------~~~~~d~~~v~avr~~--g~~~~--L~vDaN~--~w~~~~A~ 246 (416)
|..+ +..+...++++.+.|.-.+-|. .| .++++=+++|++++++ .+++- -|-|+.. ....++|+
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 4444 8889999999999999888664 32 2567788899999986 35654 4678854 66789999
Q ss_pred HHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 247 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.++...+.|....|+|-+.. .+.++++.+ +.+.|+..-.. ....++.++.+.| +..+..
T Consensus 159 ~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~~ 218 (238)
T PF13714_consen 159 ERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVSY 218 (238)
T ss_dssp HHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEEE
T ss_pred HHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEEE
Confidence 999999999877678888854 444667664 45788877553 3224566666666 455543
No 156
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.35 E-value=24 Score=34.23 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=47.1
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++. ....+.+.+.++++.| ++-+.+|.+..- +..++++.++|+++|+.+
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~V 131 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSV 131 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3678999965 4566899999999998 799999999875 556899999999999877
No 157
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=81.22 E-value=38 Score=34.65 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=90.2
Q ss_pred eeeEeecCC-CHHHHHHHHHHHHHcCCCEEEEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 014886 177 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~KiKvG-~--------------~~~~d~~~v~avr~~g~~~~L~vDaN~~w 240 (416)
++..++... +++++.+.++.+.+.|+..|-+.++ + +++.-.+.++++++.. ++.+.|=-.-
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-- 177 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-- 177 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC--
Confidence 344555555 7888888888887889999998876 1 2233444566666642 3444444432
Q ss_pred CHHHHHHHHHHHHhCCCCcee------------ee----cC-CCCC--------------CHHHHHHhHHhhhccC---C
Q 014886 241 KPQEAVEVLEKLYEMGVTPVL------------FE----QP-VHRD--------------DWEGLGHVSHIAKDKF---G 286 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~------------iE----eP-~~~~--------------d~~~~~~l~~~~r~~~---~ 286 (416)
+..+...+++.+++.++.-.- +| .| +... .++..++++ ++. +
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~----~~~~~~~ 253 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIA----RDPETRG 253 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHH----hccccCC
Confidence 233355677878776643111 12 13 1110 122233333 344 7
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC--c--hH-H-HHHHHHHHHHcCC
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--G--VL-G-ALEIIEVVRASGL 337 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~--G--i~-~-~l~i~~~A~~~gi 337 (416)
+||.+-=-+.+.+|+.+++..| +|.||+=-+-. | +. . ...+.++.+++|+
T Consensus 254 ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999988899999999999988 58888764432 4 22 1 1234456666764
No 158
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=81.11 E-value=27 Score=35.17 Aligned_cols=103 Identities=22% Similarity=0.386 Sum_probs=70.1
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeec--CCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+| .|+.++-+++++.|.+.|+. .||= |.. +++++.++.+.+ ......|+.-= -.+..++..+++.
T Consensus 10 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~~-r~~~~di~~a~~~ 83 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQ---EGLNAEICSLA-RALKKDIDKAIDC 83 (363)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEEc-ccCHHHHHHHHHc
Confidence 5555 45889999999999999985 8997 654 345655666653 23345555321 3568899999988
Q ss_pred CCCCEEEeCCC-----------CC--c-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 308 NLADVINIKLA-----------KV--G-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 308 ~a~d~v~~k~~-----------k~--G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
| ++.+.+=.. +. . +..+.+.+.+|+++|+.+.++.+
T Consensus 84 g-~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 84 G-VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 7 677776211 11 1 34467889999999999877643
No 159
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=81.09 E-value=26 Score=33.98 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=47.0
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~V 129 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSV 129 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 4668999965 4567889999999998 799999999874 456889999999999987
No 160
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.91 E-value=31 Score=34.74 Aligned_cols=106 Identities=15% Similarity=0.233 Sum_probs=69.3
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCceeeecCCC--C-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQPVH--R-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEeP~~--~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+|+ |+.++-+++++.|.+.|+. .||==+| . .+++..+.+.+ ...+..++.= .-.+..++..+++.
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 84 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVA---LGLPARLMAW-CRARDADIEAAARC 84 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHH---cCCCcEEEEE-cCCCHHHHHHHHcC
Confidence 55554 7899999999999999985 9999443 2 23455666653 1223334321 22467888888887
Q ss_pred CCCCEEEeCCCCC--------c------hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 308 NLADVINIKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 308 ~a~d~v~~k~~k~--------G------i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
| ++.+.+=.... | +....+++++|+++|+.+.+++...+
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~ 137 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS 137 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC
Confidence 6 56665443321 1 22345789999999999988876543
No 161
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=80.44 E-value=54 Score=31.12 Aligned_cols=122 Identities=19% Similarity=0.184 Sum_probs=73.8
Q ss_pred eecCCCHHHHHHHHHHHHHc-CCCEEEEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 181 TIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~~----~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+.+..+.+|.+..++-.++. |-+-+|+.|-.|. .+-.+.|++.++. -.++..+- -+.=|+. .+++|++
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlp--yc~dd~~----~ar~l~~ 142 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLP--YCTDDPV----LAKRLED 142 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEE--EeCCCHH----HHHHHHH
Confidence 55667778766655555554 5788999985322 2334455555554 23333330 0111344 4566677
Q ss_pred CCCCceeeecC----CC----CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 MGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ~~l~~~~iEeP----~~----~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++.. .+ -| +- ..+.+-++.+++ ..++||..|=-+.+++|+.+.++.|+ |.+.+-
T Consensus 143 ~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelGA-dgVlV~ 204 (248)
T cd04728 143 AGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELGA-DAVLLN 204 (248)
T ss_pred cCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEC
Confidence 7754 55 33 11 123555566653 56899999999999999999999995 776553
No 162
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=80.38 E-value=34 Score=33.20 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EE----------EEeCC-CCC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SF----------ILDAN-EGY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L----------~vDaN-~~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+... .+.++.++..+.+.+. .-++ .| ..+.+ ..+ ++++|.+|.++.
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 165 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEAT 165 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHH
Confidence 4456778899999999977 5678888887777652 1111 11 11112 225 599999998865
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 166 gvD~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~----~~~iPLVlHGgSG~~~e~~~~ai~~Gi-~KiNi~ 230 (282)
T TIGR01858 166 GVDSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE----VVDVPLVLHGASDVPDEDVRRTIELGI-CKVNVA 230 (282)
T ss_pred CcCEEecccCccccC---cCCCC--ccCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 31 232 45555 457888888875 67899885 456666788999998874 334443
No 163
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=80.35 E-value=82 Score=33.19 Aligned_cols=178 Identities=16% Similarity=0.188 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------hhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~g~~~~L~vDaN~----~w~--~~~A-~~~~ 249 (416)
.+.+++...++.+.+.||..+-+--|.. -+.+.+|++++|+..++.+|..=..+ +|. +++. ..++
T Consensus 24 ~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv 103 (499)
T PRK12330 24 MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFV 103 (499)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHH
Confidence 3678888888888889999988864422 25688999999999888777543332 232 2333 4477
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC---CeEEe-CCCCCCHHHHH----HHHHcCCCCEEEeCCCCCc
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG---VSVAA-DESCRSLDDVK----KIVKGNLADVINIKLAKVG 321 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~---iPIa~-dEs~~~~~d~~----~~i~~~a~d~v~~k~~k~G 321 (416)
+...+.++.+.-|=+|+.. .+.+....+..++... .-|+. .-..++.+.+. ++.+.| +|.+.++=+- |
T Consensus 104 ~~a~~~Gidi~RIfd~lnd--v~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-G 179 (499)
T PRK12330 104 EKSAENGMDVFRVFDALND--PRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-A 179 (499)
T ss_pred HHHHHcCCCEEEEEecCCh--HHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-c
Confidence 7777888876778888864 4444333222222111 12322 12356666543 455566 6888887654 6
Q ss_pred -hH--HHHHHHHHHHH-c--CCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 322 -VL--GALEIIEVVRA-S--GLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 322 -i~--~~l~i~~~A~~-~--gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
++ .+.++....++ . ++++.+|+-...+++.+ -.++|.-....++|
T Consensus 180 ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~A--n~laAieAGad~vD 230 (499)
T PRK12330 180 LLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLV--SLMKAIEAGVDVVD 230 (499)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHH--HHHHHHHcCCCEEE
Confidence 43 44555544444 4 69999998755555443 34444333344444
No 164
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.98 E-value=24 Score=34.30 Aligned_cols=115 Identities=20% Similarity=0.361 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----E----------EEEeCCC-CC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----S----------FILDANE-GY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~----------L~vDaN~-~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+... .+.++.++..+.+.+. .-++ . +..|.+. -| ++++|.+|.++.
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 4556778899999999877 5678888887777652 1111 1 1122222 26 599999999875
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~Gi-~KiNi~ 232 (284)
T PRK12737 168 GIDSLAVAIGTAHGL---YKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLGI-CKVNVA 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCCC-eEEEeC
Confidence 31 232 44555 457888888865 66899884 566667788999998884 334553
No 165
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=79.89 E-value=24 Score=34.27 Aligned_cols=115 Identities=15% Similarity=0.266 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----E----------EEEeCC-CCC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----S----------FILDAN-EGY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~----------L~vDaN-~~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+... -+.++.++..+.+.+. .-++ . +..+.+ ..| ++++|.+|.+..
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 167 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT 167 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH
Confidence 4566778899999999977 5678888887777652 1111 1 111211 235 599999999864
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~Gi-~KiNi~ 232 (284)
T PRK09195 168 GIDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLGI-CKVNVA 232 (284)
T ss_pred CcCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 31 232 55555 457888888875 67899885 466666778999998884 334443
No 166
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=79.87 E-value=37 Score=33.01 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-C-CCc----EE----------EEeCC-CCC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SF----------ILDAN-EGY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g-~~~----~L----------~vDaN-~~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+.-. .+.++.+++.+.+.+. - -++ .| -.+.+ ..| ++++|.+|.++.
T Consensus 88 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~T 167 (286)
T PRK12738 88 DDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELT 167 (286)
T ss_pred HHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHh
Confidence 4556677899999999877 5678888887777652 1 111 11 11111 125 599999998865
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.- .|. |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 168 gvD~LAvaiGt~HG~---Y~~~p--~Ldfd~l~~I~~----~~~vPLVLHGgSG~~~e~~~kai~~GI-~KiNi~ 232 (286)
T PRK12738 168 GVDSLAVAIGTAHGL---YSKTP--KIDFQRLAEIRE----VVDVPLVLHGASDVPDEFVRRTIELGV-TKVNVA 232 (286)
T ss_pred CCCEEEeccCcccCC---CCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 31 222 33444 457888888875 67899885 456666778999998874 333443
No 167
>PRK00208 thiG thiazole synthase; Reviewed
Probab=79.46 E-value=58 Score=30.93 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=73.1
Q ss_pred eecCCCHHHHHHHHHHHHHc-CCCEEEEecCCCh----hHHHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHHH
Q 014886 181 TIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~~----~~d~~~v~avr~~-g~~~~L~-vDaN~~w~~~~A~~~~~~L~ 253 (416)
+.+..+.+|.+..++-.++. |-+-+|+.|=+|. .+-.+.|++.++. -.++..+ + +.=|+. .+++|+
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpy---c~~d~~----~ak~l~ 141 (250)
T PRK00208 69 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY---CTDDPV----LAKRLE 141 (250)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEE---eCCCHH----HHHHHH
Confidence 45667778765555555443 5678899885321 2334455555554 2333333 1 111344 456667
Q ss_pred hCCCCceeeecC----CC----CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 254 EMGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 254 ~~~l~~~~iEeP----~~----~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+++.. .+ -| +- .-+.+.++.+++ ..++||..|=-+.+++|+.+.++.| +|.+.+-
T Consensus 142 ~~G~~--~v-mPlg~pIGsg~gi~~~~~i~~i~e----~~~vpVIveaGI~tpeda~~AmelG-AdgVlV~ 204 (250)
T PRK00208 142 EAGCA--AV-MPLGAPIGSGLGLLNPYNLRIIIE----QADVPVIVDAGIGTPSDAAQAMELG-ADAVLLN 204 (250)
T ss_pred HcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 77754 55 33 11 113455566553 4689999999999999999999998 4777653
No 168
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=79.38 E-value=42 Score=29.28 Aligned_cols=112 Identities=21% Similarity=0.145 Sum_probs=70.1
Q ss_pred HHHHHHcCCCEEEEecCCC--hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce-----eeecCC
Q 014886 194 ASKYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-----LFEQPV 266 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~~--~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~-----~iEeP~ 266 (416)
+..+.+.|+..+-+..+.. ++...+.++++++..+++.+.+..+.....+.+. +.+.++... +.++..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----HHHcCCCEEEEcCCcCCCCC
Confidence 4566778999998887732 2456778888988767778777776655444331 444443211 112211
Q ss_pred CCCCH---HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 267 HRDDW---EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 267 ~~~d~---~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
...+. ...+.+ +...++||..+=-+.+.+++.++++.| +|++.+
T Consensus 152 ~~~~~~~~~~~~~~----~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~v 198 (200)
T cd04722 152 RDAVPIADLLLILA----KRGSKVPVIAGGGINDPEDAAEALALG-ADGVIV 198 (200)
T ss_pred ccCchhHHHHHHHH----HhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEe
Confidence 11111 112222 236789999988899989999999986 688764
No 169
>PLN02979 glycolate oxidase
Probab=79.36 E-value=74 Score=32.07 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=55.6
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC---c--hHHHHHHHHHHHHc--CCcEE
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV---G--VLGALEIIEVVRAS--GLNLM 340 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~---G--i~~~l~i~~~A~~~--gi~~~ 340 (416)
.-+|+.+++|++ .+++||..-|- .+.+|+.++++.| +|++.+.-.-- . ......+.+++++. .++++
T Consensus 209 ~ltW~dl~wlr~----~~~~PvivKgV-~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 209 TLSWKDVQWLQT----ITKLPILVKGV-LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred CCCHHHHHHHHh----ccCCCEEeecC-CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 345777888864 78999999988 4789999999988 68876654321 1 11122334444543 48888
Q ss_pred EccCCchHHHHHHHHHHH
Q 014886 341 IGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 341 ~~~~~es~ig~~a~~hla 358 (416)
..+-+.++.-+.-++.|.
T Consensus 283 ~dGGIr~G~Di~KALALG 300 (366)
T PLN02979 283 LDGGVRRGTDVFKALALG 300 (366)
T ss_pred EeCCcCcHHHHHHHHHcC
Confidence 888776665554444443
No 170
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=79.31 E-value=8.2 Score=38.41 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+..++-+++|++.|.+ .+==-++. ++.+.++++++.++ ..+++|+.+|=... ..-....++. +|-+.++|+
T Consensus 29 Dv~atv~QI~~L~~aGce--ivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd-~~lAl~a~~~--v~kiRINPG 103 (359)
T PF04551_consen 29 DVEATVAQIKRLEEAGCE--IVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFD-YRLALEAIEA--VDKIRINPG 103 (359)
T ss_dssp -HHHHHHHHHHHHHCT-S--EEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTT-CHHHHHHHHC---SEEEE-TT
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCC-HHHHHHHHHH--hCeEEECCC
Confidence 455556666666666653 22222221 12334444443211 23889999997754 4444455654 899999999
Q ss_pred CC--------c-hH-HHHHHHHHHHHcCCcEEEccC
Q 014886 319 KV--------G-VL-GALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 319 k~--------G-i~-~~l~i~~~A~~~gi~~~~~~~ 344 (416)
.+ | +. ...+++..|+++|+++-+|..
T Consensus 104 Ni~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN 139 (359)
T PF04551_consen 104 NIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVN 139 (359)
T ss_dssp TSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEE
T ss_pred cccccccccccchHHHHHHHHHHHHHCCCCEEEecc
Confidence 99 7 45 467899999999999987653
No 171
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=79.20 E-value=30 Score=33.59 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=45.4
Q ss_pred CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 286 GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 286 ~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++||++. ....+.+.+.++++.| ++-+.+|.+..= +..++++.++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4799865 4566889999999998 799999999874 5568999999999999873
No 172
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=79.14 E-value=34 Score=31.01 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=74.6
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
.+...++++..+.++.+ +.|++.+|+-..-....-.+.++.+|+..++..+.+|..-. ++.. ..++.+.+.|..
T Consensus 5 alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad-- 78 (206)
T TIGR03128 5 ALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGAD-- 78 (206)
T ss_pred EecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCC--
Confidence 34456788888877777 77888766631122234467788899887777788886432 3221 124556666653
Q ss_pred ee----ecCCCCCCHHHHHHhHHhhhccCCCeEEeCC-CCCC-HHHHHHHHHcCCCCEEEeCCC
Q 014886 261 LF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRS-LDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 261 ~i----EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE-s~~~-~~d~~~~i~~~a~d~v~~k~~ 318 (416)
++ |-|. .......+.. ++.++++..+- +..+ .+++..+.+.| +|++.+.+.
T Consensus 79 ~i~vh~~~~~--~~~~~~i~~~----~~~g~~~~~~~~~~~t~~~~~~~~~~~g-~d~v~~~pg 135 (206)
T TIGR03128 79 IVTVLGVADD--ATIKGAVKAA----KKHGKEVQVDLINVKDKVKRAKELKELG-ADYIGVHTG 135 (206)
T ss_pred EEEEeccCCH--HHHHHHHHHH----HHcCCEEEEEecCCCChHHHHHHHHHcC-CCEEEEcCC
Confidence 66 6442 1222222222 24689998762 4444 35677776665 799988764
No 173
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=78.88 E-value=67 Score=31.31 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=70.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------cC---------CChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCC
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLK-------VG---------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYK 241 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG---------~~~~~d~~~v~avr~~--g~~~~L--~vDaN-~~w~ 241 (416)
|..++.++..-++++.+.|.-.+-|. .| .++++=+++|++++++ .+++-| |.|+- ....
T Consensus 85 GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g 164 (290)
T TIGR02321 85 GFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG 164 (290)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCC
Confidence 33444567777888998998877663 11 1345557889988886 455443 56886 5667
Q ss_pred HHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 242 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 242 ~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
.++|++.++...+.|-...|+|-|.. +.+.++++.+.. ..++|+..
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifv~~~~~--~~~ei~~~~~~~--~~p~pv~~ 210 (290)
T TIGR02321 165 QQEAVRRGQAYEEAGADAILIHSRQK--TPDEILAFVKSW--PGKVPLVL 210 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCC--CHHHHHHHHHhc--CCCCCeEE
Confidence 89999999999998876679976532 355677776421 22357754
No 174
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=78.66 E-value=42 Score=33.35 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=76.5
Q ss_pred HHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 194 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
++.+.+.|.+.+.+-... +.+.-.+.++.+|+.|.++... .|+ ..+++++..++++.+.+++....+|-+-.-.-..
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH
Confidence 455666787777765542 2233444566666666554333 233 4567788788888888777665577777665555
Q ss_pred HHHHHhHHhhhccCC--CeEEeCCC--C-CCHHHHHHHHHcCCCCEEEeCCCCCc---h---HHHHHHHHHHHHcCCc
Q 014886 272 EGLGHVSHIAKDKFG--VSVAADES--C-RSLDDVKKIVKGNLADVINIKLAKVG---V---LGALEIIEVVRASGLN 338 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~--iPIa~dEs--~-~~~~d~~~~i~~~a~d~v~~k~~k~G---i---~~~l~i~~~A~~~gi~ 338 (416)
+...++...+++..+ +||...=. + ....-...+++.| ++. +|.+-.| . ...-.++...+..|+.
T Consensus 172 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 172 DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 555555444444544 66654211 1 0112234456666 465 4544433 2 1233445566665554
No 175
>PRK06801 hypothetical protein; Provisional
Probab=78.38 E-value=34 Score=33.31 Aligned_cols=121 Identities=14% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcEE--------------EEe--CCCCC-CHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSF--------------ILD--ANEGY-KPQEAVEVLEK 251 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~L--------------~vD--aN~~w-~~~~A~~~~~~ 251 (416)
+.++++++.||+.+-+.-. .+.++.++..+++++. ..++.+ ..+ ....+ ++++|.++.++
T Consensus 88 e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~ 167 (286)
T PRK06801 88 EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDR 167 (286)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHH
Confidence 3456677899999999866 4557788877777652 112211 111 11124 47999999876
Q ss_pred HHhCCCCcee-----eecCCCCCCHHHHHHhHHhhhccCCCeEE-eCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 252 LYEMGVTPVL-----FEQPVHRDDWEGLGHVSHIAKDKFGVSVA-ADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 252 L~~~~l~~~~-----iEeP~~~~d~~~~~~l~~~~r~~~~iPIa-~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
..---+.+.+ ....-+..+++.++++++ .+++|+. .|=|-.+.++++++++.| ++-+|+.-
T Consensus 168 tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~----~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T 234 (286)
T PRK06801 168 TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQ----QTGLPLVLHGGSGISDADFRRAIELG-IHKINFYT 234 (286)
T ss_pred HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehh
Confidence 5211010000 111223457888888764 5678887 556667788999999988 56666644
No 176
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=78.29 E-value=40 Score=33.15 Aligned_cols=55 Identities=13% Similarity=0.303 Sum_probs=46.3
Q ss_pred cCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 284 KFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 284 ~~~-iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
+.. +||++. ....+.+.+.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 71 RYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSV 131 (307)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 454 899976 4566899999999998 799999999864 556899999999999987
No 177
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=78.20 E-value=31 Score=32.63 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC------CCCH---HHHHHHHHHHHhCCCCceee
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~------~w~~---~~A~~~~~~L~~~~l~~~~i 262 (416)
+.++++.+.|... +-+|...-+|.+.++.+.+-+..+.+.+|+.. +|.. -...++++.++++++. ..|
T Consensus 86 e~~~~~l~~Ga~r--vvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~-~ii 162 (241)
T PRK14114 86 DYAEKLRKLGYRR--QIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLE-EIV 162 (241)
T ss_pred HHHHHHHHCCCCE--EEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCC-EEE
Confidence 3456677788875 45563333566677777433456788899843 4532 2356788888888764 344
Q ss_pred ecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 263 EQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 263 EeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
=--+.. .|++.++++++ ..++||.+.=-+.+.+|+.++.+.
T Consensus 163 ~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 163 HTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred EEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhc
Confidence 333322 35677777764 578999988889999999998875
No 178
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=78.13 E-value=35 Score=35.81 Aligned_cols=122 Identities=17% Similarity=0.282 Sum_probs=72.0
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCC--CCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHH
Q 014886 229 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH--RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 305 (416)
Q Consensus 229 ~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~--~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i 305 (416)
+.+++++++-+-++ +..+.++.|-+.++...-++.+-. ..-++.+++++ .+. ++||..+ .+.|.++.++++
T Consensus 214 ~g~l~V~aai~~~~-~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~----~~~p~~~vi~g-~v~t~e~a~~l~ 287 (486)
T PRK05567 214 QGRLRVGAAVGVGA-DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIK----AKYPDVQIIAG-NVATAEAARALI 287 (486)
T ss_pred CCCEEEEeecccCc-chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHH----hhCCCCCEEEe-ccCCHHHHHHHH
Confidence 34788888776554 335667777777776444443311 11223344443 354 7898775 568899999999
Q ss_pred HcCCCCEEEeCC-----------CCCch---HHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 306 KGNLADVINIKL-----------AKVGV---LGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 306 ~~~a~d~v~~k~-----------~k~Gi---~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+.| +|++.+=. .-+|+ +...+++..|++.+++++..+-+.++.-..-++.+
T Consensus 288 ~aG-ad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~ 352 (486)
T PRK05567 288 EAG-ADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA 352 (486)
T ss_pred HcC-CCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHh
Confidence 998 58875411 12231 12234566666789999996666555433333333
No 179
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=77.45 E-value=19 Score=33.61 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 232 L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
-.-+++...+++++..++..-+.+++++.|+|-==..-+.+-.+++++ .+ ++||..|=-+.+.++++++++.| +
T Consensus 124 ~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-A 198 (219)
T cd02812 124 RVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK----VLGDTPLIVGGGIRSGEQAKEMAEAG-A 198 (219)
T ss_pred eeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH----hcCCCCEEEeCCCCCHHHHHHHHHcC-C
Confidence 345666677899999999999999888889992112235555666653 56 89999999999999999999888 5
Q ss_pred CEEEe
Q 014886 311 DVINI 315 (416)
Q Consensus 311 d~v~~ 315 (416)
|.+.+
T Consensus 199 D~VVV 203 (219)
T cd02812 199 DTIVV 203 (219)
T ss_pred CEEEE
Confidence 87766
No 180
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=77.06 E-value=66 Score=33.95 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=67.3
Q ss_pred HHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCceee------
Q 014886 191 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLF------ 262 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~i------ 262 (416)
.+.++.+++.|...+=+.... .-..-++.|+.+|+.+|+..+++ |. -|.++|.+.. +.+.....+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~----~aGaD~i~vg~g~G~ 322 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---VTMYQAQNLI----QAGVDGLRVGMGSGS 322 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---CCHHHHHHHH----HcCcCEEEECCCCCc
Confidence 456666777777777776652 22333456667777667666653 33 3455554433 344431111
Q ss_pred ---e-c------CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 ---E-Q------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 ---E-e------P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
- + |. ...+..++++. +..++||.+|--+.+..|+.+++..|+ +.+++
T Consensus 323 ~~~t~~~~~~g~~~-~~~i~~~~~~~----~~~~vpVIadGGI~~~~di~kAla~GA-~~V~v 379 (505)
T PLN02274 323 ICTTQEVCAVGRGQ-ATAVYKVASIA----AQHGVPVIADGGISNSGHIVKALTLGA-STVMM 379 (505)
T ss_pred cccCccccccCCCc-ccHHHHHHHHH----HhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 1 0 11 11233345444 356899999999999999999999985 77765
No 181
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=76.90 E-value=45 Score=32.50 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=45.7
Q ss_pred CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 286 GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 286 ~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
.+||++- ....+.+.+.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 7899965 4567899999999997 899999998874 5568999999999999873
No 182
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=76.88 E-value=27 Score=33.94 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=44.7
Q ss_pred CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 287 VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 287 iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
+||++. ....+.+.+.+.++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 788865 4566899999999998 799999999875 5568999999999999873
No 183
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=76.88 E-value=37 Score=33.01 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EEE-E----e----CCCCC-CHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SFI-L----D----ANEGY-KPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L~-v----D----aN~~w-~~~~A~~~~~~L~~ 254 (416)
+.+.++++.||+.+-+... .+.++.+++.+.+.+. .-++ .|- | | .+..| ++++|.+|.++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tgv 170 (286)
T PRK08610 91 EKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGI 170 (286)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCC
Confidence 3456678899999999977 5778888887777652 1111 110 1 1 12226 59999999886431
Q ss_pred ----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 255 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 255 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.|+ |-.+| .-|++-++++++ .+++|+.+ |=|-...++++++++.|.. =+|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~GI~-KiNi~ 233 (286)
T PRK08610 171 DALAPALGSVHGP---YKGEP--KLGFKEMEEIGL----STGLPLVLHGGTGIPTKDIQKAIPFGTA-KINVN 233 (286)
T ss_pred CEEEeeccccccc---cCCCC--CCCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHCCCe-EEEec
Confidence 222 43444 447888888864 67899985 4566667889999988843 33443
No 184
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=76.86 E-value=56 Score=29.38 Aligned_cols=139 Identities=16% Similarity=0.235 Sum_probs=86.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (416)
-..++++..+.++.+.+.|++.+-+.... ....+.++.+++.+|++.+ -+-.-.+.+++.. +...+.. ++
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~i--Gag~v~~~~~~~~----a~~~Ga~--~i 80 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEALI--GAGTVLTPEQADA----AIAAGAQ--FI 80 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCEE--EEEeCCCHHHHHH----HHHcCCC--EE
Confidence 34578888899999999999999998863 2466688888888775443 3333444554322 2334432 55
Q ss_pred ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHc-CCcEEE
Q 014886 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRAS-GLNLMI 341 (416)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~-gi~~~~ 341 (416)
==|- .+.+ ..+.+ +..++++..|=+ |+.++.++.+.| +|++.+.+...-..+.++ .+.+.. +++++.
T Consensus 81 ~~p~--~~~~-~~~~~----~~~~~~~i~gv~--t~~e~~~A~~~G-ad~i~~~p~~~~g~~~~~--~l~~~~~~~p~~a 148 (190)
T cd00452 81 VSPG--LDPE-VVKAA----NRAGIPLLPGVA--TPTEIMQALELG-ADIVKLFPAEAVGPAYIK--ALKGPFPQVRFMP 148 (190)
T ss_pred EcCC--CCHH-HHHHH----HHcCCcEECCcC--CHHHHHHHHHCC-CCEEEEcCCcccCHHHHH--HHHhhCCCCeEEE
Confidence 4343 2332 33333 245788887655 899999999887 699999875432223332 223333 477766
Q ss_pred cc
Q 014886 342 GG 343 (416)
Q Consensus 342 ~~ 343 (416)
-+
T Consensus 149 ~G 150 (190)
T cd00452 149 TG 150 (190)
T ss_pred eC
Confidence 44
No 185
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.51 E-value=95 Score=31.79 Aligned_cols=127 Identities=17% Similarity=0.281 Sum_probs=82.6
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~ 253 (416)
+.+.+.++. +++ ..+.++.+++.|...+=|.... +.+.-.+.|+.+|+.+|+..+++ |. -|.++|....+
T Consensus 142 l~v~aavg~-~~~-~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V---~T~e~a~~l~~--- 213 (404)
T PRK06843 142 LRVGAAVSI-DID-TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI---VTKEAALDLIS--- 213 (404)
T ss_pred eEEEEEEeC-CHH-HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec---CCHHHHHHHHH---
Confidence 444555543 233 4577788889999999888863 34566678999999888877654 33 35666655433
Q ss_pred hCCCCceeee---cC-----------CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 254 EMGVTPVLFE---QP-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 254 ~~~l~~~~iE---eP-----------~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+.. +|= .| +...++..+..+.+.+ +..++||.+|--+.+..|+.+.+..|+ |.+++
T Consensus 214 -aGaD--~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~-~~~~vpVIAdGGI~~~~Di~KALalGA-~aVmv 284 (404)
T PRK06843 214 -VGAD--CLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC-KNTNICIIADGGIRFSGDVVKAIAAGA-DSVMI 284 (404)
T ss_pred -cCCC--EEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 3432 321 11 1112444444443321 356899999999999999999999985 77765
No 186
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=76.43 E-value=36 Score=33.23 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=43.6
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++||++.=-..+.+.+.++++.| ++.+|+|-+..- +..++++.++|+++|+.+.
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 67888653333888899999887 799999998875 4458899999999999983
No 187
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=76.26 E-value=1e+02 Score=33.34 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCceeeecCCC
Q 014886 191 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (416)
...++.+.+.|...|.+-... +++.-...++.+++.|..+...+.. ...++++..+++++.+.+.+.....|=+-.-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAG 178 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCC
Confidence 445556666777777766552 3322233355555555444433322 2346677777777777777765556666655
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEeCCC---CCCHHHHHHHHHcCCCCEEEeCCCCC
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAADES---CRSLDDVKKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~dEs---~~~~~d~~~~i~~~a~d~v~~k~~k~ 320 (416)
.-......++...++++.++||...=+ -........+++.| +|++..-+.-+
T Consensus 179 ~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aG-ad~vD~ai~g~ 233 (592)
T PRK09282 179 LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAG-VDIIDTAISPL 233 (592)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhC-CCEEEeecccc
Confidence 444555555555455566677764211 11222334455666 57665444433
No 188
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=76.13 E-value=7.7 Score=36.31 Aligned_cols=115 Identities=24% Similarity=0.377 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CC-CcEEEEeCCCC-------CCH---HHHHHHHHHHHhCCCCc
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDANEG-------YKP---QEAVEVLEKLYEMGVTP 259 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~-~~~L~vDaN~~-------w~~---~~A~~~~~~L~~~~l~~ 259 (416)
+.++++.+.|.. |+-+|...-+|.+.++.+.+. ++ .+-+.+|+..+ |.. -...++++++.++++.
T Consensus 86 ed~~~ll~~Ga~--~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~- 162 (229)
T PF00977_consen 86 EDAERLLDAGAD--RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAG- 162 (229)
T ss_dssp HHHHHHHHTT-S--EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-S-
T ss_pred HHHHHHHHhCCC--EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCc-
Confidence 345667888876 566664334566677878777 55 57888998765 532 2456778888887764
Q ss_pred eeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 260 VLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 260 ~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
.+|=.-+.. -|++.++++++ ..++|+.+.=-+.+.+|+.++.+.|. +.+.
T Consensus 163 ~ii~tdi~~dGt~~G~d~~~~~~l~~----~~~~~viasGGv~~~~Dl~~l~~~G~-~gvi 218 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPDLELLKQLAE----AVNIPVIASGGVRSLEDLRELKKAGI-DGVI 218 (229)
T ss_dssp EEEEEETTTTTTSSS--HHHHHHHHH----HHSSEEEEESS--SHHHHHHHHHTTE-CEEE
T ss_pred EEEEeeccccCCcCCCCHHHHHHHHH----HcCCCEEEecCCCCHHHHHHHHHCCC-cEEE
Confidence 444444433 25666777764 56899998888999999999998875 5543
No 189
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=76.08 E-value=70 Score=33.49 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=43.6
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--------C---CCCCc---hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINI--------K---LAKVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~--------k---~~k~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
++||.+| ++.|.+..+++++.| +|++.+ - ++-+| ++.-++++..|+.+|++++-.+-+.++
T Consensus 266 ~~~vi~g-~~~t~~~~~~l~~~G-~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~ 340 (475)
T TIGR01303 266 GVPIVAG-NVVSAEGVRDLLEAG-ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHP 340 (475)
T ss_pred CCeEEEe-ccCCHHHHHHHHHhC-CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCH
Confidence 6899886 567889999999988 588751 1 22234 234467777888999999987766554
No 190
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=76.03 E-value=73 Score=30.23 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHH-HHHHHhC--CCcEEEEeCC------CCCCHHHHHH-HHHHHHhC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVH--PDSSFILDAN------EGYKPQEAVE-VLEKLYEM 255 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v-~avr~~g--~~~~L~vDaN------~~w~~~~A~~-~~~~L~~~ 255 (416)
+.++..+.++.+.+.|++.|-.--........+.+ +++++.. .++.|.-=.. ..++.+...+ +-+.|+.+
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45677788888999999997543221111122222 2344332 2222221111 1245554433 22334443
Q ss_pred C---CCceeeecCCCCCC--HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeCCCCCchHHHHHH
Q 014886 256 G---VTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGALEI 328 (416)
Q Consensus 256 ~---l~~~~iEeP~~~~d--~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--~a~d~v~~k~~k~Gi~~~l~i 328 (416)
+ +.++++-.|-.... .+.+..|.+ ++ +.+.-=+.|=|.++...+.++++. ..+|++|+...-+--.....+
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~-l~-~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 184 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEE-LV-KEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEEL 184 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHH-HH-HcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHH
Confidence 3 33456667754332 223333332 11 234444566688888888888887 789999988766431111268
Q ss_pred HHHHHHcCCcEEEccCCch
Q 014886 329 IEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 329 ~~~A~~~gi~~~~~~~~es 347 (416)
...|+++|+.++..+.+..
T Consensus 185 ~~~~~~~gi~v~~~~~l~~ 203 (285)
T cd06660 185 LPYCREHGIGVIAYSPLAG 203 (285)
T ss_pred HHHHHHcCcEEEEeccccC
Confidence 8999999999988776644
No 191
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=75.81 E-value=56 Score=31.28 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC--CeEE
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVA 290 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~--iPIa 290 (416)
++.+...++++.+.+++....+|-+.+-.-..+...++-+.+++..+ +||.
T Consensus 135 ~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~ 187 (266)
T cd07944 135 YSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLG 187 (266)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEE
Confidence 55555555555555554443445555444444444443333333333 4443
No 192
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=75.71 E-value=62 Score=33.55 Aligned_cols=110 Identities=16% Similarity=0.304 Sum_probs=65.0
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC-C---CHHHHHHhHHhhhcc-CCCeEEeCCCCCCHHHHHHH
Q 014886 230 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-D---DWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 230 ~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~---d~~~~~~l~~~~r~~-~~iPIa~dEs~~~~~d~~~~ 304 (416)
-+++|++.-+-+.+. .+.++.|-+.++. .|+=-... + -++..++++ +. .++||.++ ++.|.++.+.+
T Consensus 211 g~l~V~aav~~~~~~-~~r~~~L~~aG~d--~I~vd~a~g~~~~~~~~i~~i~----~~~~~~~vi~G-~v~t~~~a~~l 282 (450)
T TIGR01302 211 GRLIVGAAVGTREFD-KERAEALVKAGVD--VIVIDSSHGHSIYVIDSIKEIK----KTYPDLDIIAG-NVATAEQAKAL 282 (450)
T ss_pred CCEEEEEEecCchhH-HHHHHHHHHhCCC--EEEEECCCCcHhHHHHHHHHHH----HhCCCCCEEEE-eCCCHHHHHHH
Confidence 356777665554433 3344455556654 55533311 1 122334443 24 46898886 56889999999
Q ss_pred HHcCCCCEEEeCCC-----------CCc---hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 305 VKGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 305 i~~~a~d~v~~k~~-----------k~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
++.| +|++.+-++ -+| ++...++++.|++++++++..+-+.++
T Consensus 283 ~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~ 339 (450)
T TIGR01302 283 IDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYS 339 (450)
T ss_pred HHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCH
Confidence 9988 588854321 134 122356777888899999995544444
No 193
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.70 E-value=42 Score=32.56 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=46.2
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++.++||++. ....+.+.+.+.++.| ++.+.+|.+..= +..++++.++|+++|+.+
T Consensus 71 ~~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 71 DKMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3668898865 3456888999999998 799999998874 456889999999999987
No 194
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.67 E-value=41 Score=32.68 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=46.7
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~ 339 (416)
++..+||++. ....+.+.+.++++.| ++-+.+|-+..= +..++++.++|+.+|+.+
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsV 131 (284)
T PRK12857 71 EKASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSV 131 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3568899965 4566889999999987 799999998874 456899999999999987
No 195
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.49 E-value=45 Score=35.15 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC----HHHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+.+++.+.++.|-+.++. .||=+..+.. .+.++++++ .. +++|.+| ++.+.++++.+++.|+ |++.
T Consensus 239 ~~~~~~~ra~~Lv~aGvd--~i~vd~a~g~~~~~~~~i~~ir~----~~~~~~~V~aG-nV~t~e~a~~li~aGA-d~I~ 310 (502)
T PRK07107 239 NTRDYAERVPALVEAGAD--VLCIDSSEGYSEWQKRTLDWIRE----KYGDSVKVGAG-NVVDREGFRYLAEAGA-DFVK 310 (502)
T ss_pred ChhhHHHHHHHHHHhCCC--eEeecCcccccHHHHHHHHHHHH----hCCCCceEEec-cccCHHHHHHHHHcCC-CEEE
Confidence 345677888889888875 7886765554 455666654 33 3777777 6688999999999985 8875
Q ss_pred e
Q 014886 315 I 315 (416)
Q Consensus 315 ~ 315 (416)
+
T Consensus 311 v 311 (502)
T PRK07107 311 V 311 (502)
T ss_pred E
Confidence 5
No 196
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.46 E-value=70 Score=33.55 Aligned_cols=61 Identities=23% Similarity=0.425 Sum_probs=41.9
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC-----------CCCCc---hHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINIK-----------LAKVG---VLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k-----------~~k~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+++|.+| ++.|.+..+.+++.| +|++.+- .+-+| ++...++++.|+++|++++.-+-+.++
T Consensus 268 ~~~v~ag-nv~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~ 342 (479)
T PRK07807 268 GVPIVAG-NVVTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHP 342 (479)
T ss_pred CCeEEee-ccCCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCH
Confidence 5888887 457889999999998 6988621 12223 233456677777899999886655444
No 197
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=75.29 E-value=29 Score=34.67 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=45.4
Q ss_pred cCC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCC-------c----hHHHHHHHHHHHHcCCcE
Q 014886 284 KFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKV-------G----VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 284 ~~~-iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~-------G----i~~~l~i~~~A~~~gi~~ 339 (416)
+.. +||++. ....+.+.+.+.++.| ++-+.+|.+.. - +..++++.++|+++|+.|
T Consensus 70 ~~~~VPValHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsV 137 (347)
T TIGR01521 70 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASV 137 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 454 899965 4557899999999997 79999999864 2 556899999999999987
No 198
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.26 E-value=72 Score=29.80 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHH----hCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCc
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA----VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~----~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (416)
..++++..+.++.+.+.|++.+-|-... ....+.++.+++ .+| ++.|=+-.-.|.+++.+. .+.|.+
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~t--p~a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a~~a----~~aGA~- 93 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRG--DFAHEVFAELVKYAAKELP--GMILGVGSIVDAATAALY----IQLGAN- 93 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCC--CcHHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHHHHH----HHcCCC-
Confidence 4578889999999999999999988852 234455555553 345 478888999999987554 346653
Q ss_pred eeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHH-HHHHHHcCCc
Q 014886 260 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEI-IEVVRASGLN 338 (416)
Q Consensus 260 ~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i-~~~A~~~gi~ 338 (416)
|+=-|.-..++ .+. + ++.++|+.-| +.|+.++...++.| ++++.+=|..++....+|. ..-- -+++
T Consensus 94 -FiVsP~~~~~v--~~~-~----~~~~i~~iPG--~~TpsEi~~A~~~G-a~~vKlFPA~~~G~~~ikal~~p~--p~i~ 160 (222)
T PRK07114 94 -FIVTPLFNPDI--AKV-C----NRRKVPYSPG--CGSLSEIGYAEELG-CEIVKLFPGSVYGPGFVKAIKGPM--PWTK 160 (222)
T ss_pred -EEECCCCCHHH--HHH-H----HHcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECcccccCHHHHHHHhccC--CCCe
Confidence 88888754443 322 2 1568999876 67899999999998 5998888866542332322 2111 3678
Q ss_pred EEEccCC
Q 014886 339 LMIGGMV 345 (416)
Q Consensus 339 ~~~~~~~ 345 (416)
+++.+-+
T Consensus 161 ~~ptGGV 167 (222)
T PRK07114 161 IMPTGGV 167 (222)
T ss_pred EEeCCCC
Confidence 8887654
No 199
>PRK15108 biotin synthase; Provisional
Probab=75.13 E-value=45 Score=33.26 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhCCCCceee----ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++++.++.++...+.|+.-..+ ++|.. .+++.+.++.+.++ +.++.++.--...+.+.+.++.+.| +|.++++
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~-~~~e~i~~~i~~ik-~~~i~v~~s~G~ls~e~l~~LkeAG-ld~~n~~ 153 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVK-AMGLETCMTLGTLSESQAQRLANAG-LDYYNHN 153 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCCCCc-chHHHHHHHHHHHH-hCCCEEEEeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 5566666555555444321111 23421 12333434333222 2345544322234566677766666 5655542
Q ss_pred ----------CCCCc-hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 317 ----------LAKVG-VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 317 ----------~~k~G-i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
++..+ ..+.++.+..|++.|+.+..|.++
T Consensus 154 leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~ 193 (345)
T PRK15108 154 LDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIV 193 (345)
T ss_pred cccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEE
Confidence 21123 667899999999999988766554
No 200
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=74.92 E-value=91 Score=30.82 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=77.2
Q ss_pred HHHHHHHHhCCCcEEEEeCCC----CCCHHHHHHHHHHHHhCCCCce--ee-e--cCCCCCCHHHH-HHhHHhhhccCCC
Q 014886 218 EVLRAIRAVHPDSSFILDANE----GYKPQEAVEVLEKLYEMGVTPV--LF-E--QPVHRDDWEGL-GHVSHIAKDKFGV 287 (416)
Q Consensus 218 ~~v~avr~~g~~~~L~vDaN~----~w~~~~A~~~~~~L~~~~l~~~--~i-E--eP~~~~d~~~~-~~l~~~~r~~~~i 287 (416)
+-++.+|+..++..+.+--+. .|+.+++.+..+.++...+.+. .. | +|-...|++.+ ..++ .+++..++
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~-~l~~~~~v 179 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIE-ELVKALSV 179 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHH-HHHHhcCC
Confidence 567777877666665543332 6688888887777764332211 00 2 33334456432 2222 23346789
Q ss_pred eEEeCCC--CCCHHHHHHHHHcCCCCEEEeCCC-------------------------CCchHHHHHHHHHHHHc-CCcE
Q 014886 288 SVAADES--CRSLDDVKKIVKGNLADVINIKLA-------------------------KVGVLGALEIIEVVRAS-GLNL 339 (416)
Q Consensus 288 PIa~dEs--~~~~~d~~~~i~~~a~d~v~~k~~-------------------------k~Gi~~~l~i~~~A~~~-gi~~ 339 (416)
||..=++ ..+.++++.+.+.| +|++.+.-. .+|+.....+....+.. ++++
T Consensus 180 PVivK~~g~g~s~~~a~~l~~~G-vd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipI 258 (326)
T cd02811 180 PVIVKEVGFGISRETAKRLADAG-VKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPL 258 (326)
T ss_pred CEEEEecCCCCCHHHHHHHHHcC-CCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcE
Confidence 9998654 24677888887777 788875321 01221122333334444 7888
Q ss_pred EEccCCchHHHHHHHHHH
Q 014886 340 MIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 340 ~~~~~~es~ig~~a~~hl 357 (416)
+..+.+.++.-...++.+
T Consensus 259 iasGGIr~~~dv~kal~l 276 (326)
T cd02811 259 IASGGIRNGLDIAKALAL 276 (326)
T ss_pred EEECCCCCHHHHHHHHHh
Confidence 887777666555444443
No 201
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=74.63 E-value=59 Score=32.37 Aligned_cols=141 Identities=11% Similarity=0.037 Sum_probs=74.3
Q ss_pred HHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 194 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~-vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
++.+.+.|.+.+.+-... +.+.-.+.++.+|+.|.++... .|+ ..+++++..++++.+.+++....+|=+-.-.-..
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 172 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLP 172 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH
Confidence 455566777777665542 2233444566666666554433 244 5567777777888777777654566666655555
Q ss_pred HHHHHhHHhhhccC--CCeEEeCCC--C-CCHHHHHHHHHcCCCCEEEeCCCCCc---hH---HHHHHHHHHHHcCCc
Q 014886 272 EGLGHVSHIAKDKF--GVSVAADES--C-RSLDDVKKIVKGNLADVINIKLAKVG---VL---GALEIIEVVRASGLN 338 (416)
Q Consensus 272 ~~~~~l~~~~r~~~--~iPIa~dEs--~-~~~~d~~~~i~~~a~d~v~~k~~k~G---i~---~~l~i~~~A~~~gi~ 338 (416)
+...++-+.+++.. ++||...=. + -...-...+++.| ++. +|.+-.| .. ..-.++...+..|+.
T Consensus 173 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 173 EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-ATR--IDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CCE--EEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 55555444444444 466654211 1 0112234456666 464 4544443 21 223345555555554
No 202
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.35 E-value=47 Score=32.25 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----E----------EEEeCCC-CC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----S----------FILDANE-GY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~----------L~vDaN~-~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+.-. .+.++.+++.+.+.+. .-++ . +..+.+. .+ ++++|.+|.+..
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~T 167 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEET 167 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHH
Confidence 3456677889999999976 5678888887777652 1111 1 1112222 25 599999999865
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|. .=+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi-~KiNi~ 232 (284)
T PRK12857 168 GVDALAIAIGTAHGP---YKGEP--KLDFDRLAKIKE----LVNIPIVLHGSSGVPDEAIRKAISLGV-RKVNID 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCC-eEEEeC
Confidence 31 232 44445 457888888875 56899884 566677788999998884 334554
No 203
>PRK08185 hypothetical protein; Provisional
Probab=74.27 E-value=36 Score=33.01 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=47.0
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++..+||++. ....+.+.++++++.| ++.+++|-+..- +..++++..+|+.+|+.+-
T Consensus 65 ~~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 65 KRSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3668899965 4556889999999987 799999998875 4568899999999999983
No 204
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=74.07 E-value=22 Score=37.19 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCceeee---
Q 014886 189 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE--- 263 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iE--- 263 (416)
+..+.++.++++|.+.+=+.... .-..-++.|+.||+.+|+..++. |.- |.++|...++ .|.. .|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~---t~~~a~~l~~----aGad--~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV---TAEGTRDLVE----AGAD--IVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC---CHHHHHHHHH----cCCC--EEEECc
Confidence 44577788888999998877753 23455667888998899988886 432 4566555443 3332 332
Q ss_pred cC-----------CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 264 QP-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 264 eP-----------~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
-| +...++....++++.. +..++||.+|--+.+..|+.+.+..|+ |.+++
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~-~~~~~~via~ggi~~~~~~~~al~~ga-~~v~~ 358 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAA-RELGAHVWADGGVRHPRDVALALAAGA-SNVMI 358 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHH-HhcCCcEEecCCCCCHHHHHHHHHcCC-Ceeec
Confidence 02 1123566666665432 256899999999999999999999884 66655
No 205
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=73.99 E-value=26 Score=33.45 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHHHHhC-C---CcEE--EEeCC-CCC-----C---HHHHHHHH
Q 014886 186 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVH-P---DSSF--ILDAN-EGY-----K---PQEAVEVL 249 (416)
Q Consensus 186 ~~~~~~~~~~~~~~-~G~~~~KiKvG~~~~~d~~~v~avr~~g-~---~~~L--~vDaN-~~w-----~---~~~A~~~~ 249 (416)
++++..+.+.+..+ .|-..+||.=| .+-.++|+++++++ | .+.| +-|.+ +.+ + .+++++-+
T Consensus 88 ~~~~av~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra 164 (254)
T cd06557 88 SPEQALRNAARLMKEAGADAVKLEGG---AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDA 164 (254)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHH
Confidence 58888777766666 99999999855 46778899988864 3 1111 11111 112 2 47788888
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
+.+++.|....++|-+ + . +..+++++ ++++|+.
T Consensus 165 ~a~~~AGA~~i~lE~v-~-~--~~~~~i~~----~v~iP~i 197 (254)
T cd06557 165 LALEEAGAFALVLECV-P-A--ELAKEITE----ALSIPTI 197 (254)
T ss_pred HHHHHCCCCEEEEcCC-C-H--HHHHHHHH----hCCCCEE
Confidence 8899988765677777 3 2 45677764 6788887
No 206
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=73.68 E-value=59 Score=29.89 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCH-HHHHHhHHhhhccCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~r~~~~--iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
+.+++.+.++.+-+.|+. .+|=.+...+. +.++.+++ +.+ +.|-+| ++.+.+++...++.|+ |++..-.
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaG-TV~~~~~~~~a~~aGA-~fivsp~ 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAG-TVLSPEQVDRLADAGG-RLIVTPN 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEE-ecCCHHHHHHHHHcCC-CEEECCC
Confidence 789999999999999986 89988876543 34555543 344 344444 7888999999999985 7775411
Q ss_pred CCCchHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 318 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 318 ~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
.. ..+...++..|+.+.+|++..+.
T Consensus 92 ----~~--~~v~~~~~~~~~~~~~G~~t~~E 116 (206)
T PRK09140 92 ----TD--PEVIRRAVALGMVVMPGVATPTE 116 (206)
T ss_pred ----CC--HHHHHHHHHCCCcEEcccCCHHH
Confidence 11 35677788999999999876444
No 207
>PRK09234 fbiC FO synthase; Reviewed
Probab=73.59 E-value=22 Score=39.86 Aligned_cols=127 Identities=18% Similarity=0.162 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHH----HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDI----EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~----~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+++++.+.++++.+.|.+.|-|--|.+++.+. +.+++|++.+|++.+- +|++.|-..+ ....++.
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~-----afsp~Ei~~~---a~~~Gl~--- 626 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH-----AFSPMEIVNG---AARLGLS--- 626 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE-----ecChHHHHHH---HHHcCCC---
Confidence 67899999999999999999988664443333 4477788878877663 3444433222 1222321
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~ 341 (416)
+| +.+++|++. .-..+|-. .+.+.+. ++++ .+.+.|+...+++++...|++.|+++..
T Consensus 627 ~~--------e~l~~LkeA--GLds~pgt-~aeil~d-~vr~----------~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 627 IR--------EWLTALREA--GLDTIPGT-AAEILDD-EVRW----------VLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred HH--------HHHHHHHHh--CcCccCCC-chhhCCH-HHHh----------hcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 11 223444321 11123421 1222221 2322 1334455555778888999999998755
Q ss_pred ccCC
Q 014886 342 GGMV 345 (416)
Q Consensus 342 ~~~~ 345 (416)
+.++
T Consensus 685 tmm~ 688 (843)
T PRK09234 685 TMMY 688 (843)
T ss_pred ceEE
Confidence 5444
No 208
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=73.57 E-value=28 Score=37.79 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+..++-+++|++.|.+ .+==-++. .+.+.++.+++.|+ ..+.+|+.+|=. +++.-+...++. +|-+.+.|+
T Consensus 108 D~eatv~Qi~~l~~aGce--iVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al~a~~~--vdkiRINPG 182 (733)
T PLN02925 108 DVEATVDQVMRIADKGAD--IVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIH-FAPSVALRVAEC--FDKIRVNPG 182 (733)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecC-CCHHHHHHHHHh--cCCeEECCc
Confidence 344555555666665543 33222322 12344455544222 367899999976 445444455553 899999999
Q ss_pred CCc-h----------------------HHHHHHHHHHHHcCCcEEEccC
Q 014886 319 KVG-V----------------------LGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 319 k~G-i----------------------~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
..| - .....++..|+++|+++-+|..
T Consensus 183 N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN 231 (733)
T PLN02925 183 NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN 231 (733)
T ss_pred ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 998 4 2234589999999999988654
No 209
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=73.46 E-value=46 Score=33.29 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=45.6
Q ss_pred cC-CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCC-------c----hHHHHHHHHHHHHcCCcEE
Q 014886 284 KF-GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKV-------G----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 284 ~~-~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~-------G----i~~~l~i~~~A~~~gi~~~ 340 (416)
+. .+||++. ....+.+.+.+.++.| ++-+.+|.+.. - +..++++.++|+++|+.+-
T Consensus 72 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 72 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 44 3888865 4457889999999998 79999999976 3 5568999999999999873
No 210
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=73.46 E-value=1.2e+02 Score=31.63 Aligned_cols=177 Identities=20% Similarity=0.241 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHhCCCcEEEEe---CC-CCCCH---HHHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILD---AN-EGYKP---QEAVEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~g~~~~L~vD---aN-~~w~~---~~A~~~~ 249 (416)
.+.+++...+..+-+.||..+-+--|. --+.+.+|++++|+..|+.+|..= .| =+|.. +--..|+
T Consensus 32 ~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv 111 (468)
T PRK12581 32 LSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFI 111 (468)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHH
Confidence 356888888888888899998876442 225789999999998877655322 22 13432 3334577
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe----EE-eCCCCCCHHH----HHHHHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDD----VKKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP----Ia-~dEs~~~~~d----~~~~i~~~a~d~v~~k~~k~ 320 (416)
+...+.|+.+..+=+.+. |.+.+....+..+ +.+.- |+ .+...++.+- ++++.+.| +|.+.++=+-
T Consensus 112 ~~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak-~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G-ad~I~IkDta- 186 (468)
T PRK12581 112 SLSAQNGIDVFRIFDALN--DPRNIQQALRAVK-KTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG-ADSICIKDMA- 186 (468)
T ss_pred HHHHHCCCCEEEEcccCC--CHHHHHHHHHHHH-HcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 887888887777777765 3444443322222 22322 22 2333444432 34455666 6888887654
Q ss_pred c-hH--HHHHHHHHHH-HcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 321 G-VL--GALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 321 G-i~--~~l~i~~~A~-~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
| ++ .+.++....+ ..++++.+|+-...+++ .+-.++|.-....++|
T Consensus 187 G~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA--~An~laAieAGad~vD 236 (468)
T PRK12581 187 GILTPKAAKELVSGIKAMTNLPLIVHTHATSGIS--QMTYLAAVEAGADRID 236 (468)
T ss_pred CCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccH--HHHHHHHHHcCCCEEE
Confidence 5 33 3444444434 35688888886555544 4444444333344443
No 211
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=73.11 E-value=28 Score=32.35 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=69.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCceeeecCCCC---CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHH----cCCC
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK----GNLA 310 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~----~~a~ 310 (416)
..++.++.+++++.|.+.|+. .||--++. ++++.++.+.+.. ....+..--. ....++...++ .| +
T Consensus 9 ~~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~-~~~~~i~~~~~~~~~~g-~ 81 (237)
T PF00682_consen 9 VAFSTEEKLEIAKALDEAGVD--YIEVGFPFASEDDFEQVRRLREAL---PNARLQALCR-ANEEDIERAVEAAKEAG-I 81 (237)
T ss_dssp TT--HHHHHHHHHHHHHHTTS--EEEEEHCTSSHHHHHHHHHHHHHH---HSSEEEEEEE-SCHHHHHHHHHHHHHTT-S
T ss_pred CCcCHHHHHHHHHHHHHhCCC--EEEEcccccCHHHHHHhhhhhhhh---cccccceeee-ehHHHHHHHHHhhHhcc-C
Confidence 347889999999999999985 89987443 3555566665432 2244443322 45666666454 55 5
Q ss_pred CEEEeCCCCCc--------------hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHH
Q 014886 311 DVINIKLAKVG--------------VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 355 (416)
Q Consensus 311 d~v~~k~~k~G--------------i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~ 355 (416)
|.+.+=....= +....+++.+|+++|..+.++.+..+........
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~ 140 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELL 140 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHH
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHH
Confidence 77654433221 3456788999999999999887665544333333
No 212
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=73.07 E-value=35 Score=34.12 Aligned_cols=56 Identities=9% Similarity=0.176 Sum_probs=45.6
Q ss_pred cC-CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc-----------hHHHHHHHHHHHHcCCcEE
Q 014886 284 KF-GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG-----------VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 284 ~~-~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G-----------i~~~l~i~~~A~~~gi~~~ 340 (416)
+. .+||++. ....+.+.+.+.++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 72 ~~~~VPVaLHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 72 MYPDIPICLHQDHGNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred hcCCCcEEEECCCCCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 45 4899976 4566888999999998 799999998651 5568999999999999873
No 213
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=73.05 E-value=1.1e+02 Score=31.03 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=54.2
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-----CchHHHHHHHHHHHHc--CCcEEE
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-----VGVLGALEIIEVVRAS--GLNLMI 341 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-----~Gi~~~l~i~~~A~~~--gi~~~~ 341 (416)
-+|+.+++|+. .++.||..-+. .+.+|.+.+++.| +|++.+.-.- .|+.....+.+++++. .++++.
T Consensus 240 ~tW~~i~~lr~----~~~~pvivKgV-~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 240 LTWEDLAFLRE----WTDLPIVLKGI-LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred CCHHHHHHHHH----hcCCCEEEecC-CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 35777888764 67899999866 7789999999988 6887765321 1122223344444444 488988
Q ss_pred ccCCchHHHHHHHHHH
Q 014886 342 GGMVETRLAMGFAGHL 357 (416)
Q Consensus 342 ~~~~es~ig~~a~~hl 357 (416)
.+-+.++.-...++.|
T Consensus 314 dGGIr~G~Dv~KALaL 329 (383)
T cd03332 314 DSGVRTGADIMKALAL 329 (383)
T ss_pred eCCcCcHHHHHHHHHc
Confidence 8877666555444444
No 214
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=72.95 E-value=1.1e+02 Score=30.73 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCcEEEE----eCCCCCCHHHHHHHHHHHHhCCCCce--ee-e--cCCCCCCHHHHHHhHHhhhccCC
Q 014886 216 DIEVLRAIRAVHPDSSFIL----DANEGYKPQEAVEVLEKLYEMGVTPV--LF-E--QPVHRDDWEGLGHVSHIAKDKFG 286 (416)
Q Consensus 216 d~~~v~avr~~g~~~~L~v----DaN~~w~~~~A~~~~~~L~~~~l~~~--~i-E--eP~~~~d~~~~~~l~~~~r~~~~ 286 (416)
-.+.++.+|+..|+..+.+ ..-..|+.+++.+..+.++...+.+. .. | +|-...+++++.+.-+.+++..+
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~ 186 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALP 186 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhC
Confidence 3456777888766665544 33337889998888888865332211 11 2 34334456433222222344678
Q ss_pred CeEEeCCC--CCCHHHHHHHHHcCCCCEEEeC
Q 014886 287 VSVAADES--CRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 287 iPIa~dEs--~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+||..=|+ ..+.++++.+.+.| +|++.+.
T Consensus 187 vPVivK~~g~g~s~~~a~~l~~~G-vd~I~Vs 217 (352)
T PRK05437 187 VPVIVKEVGFGISKETAKRLADAG-VKAIDVA 217 (352)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHcC-CCEEEEC
Confidence 99997554 34677888887776 7988773
No 215
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=72.91 E-value=46 Score=31.86 Aligned_cols=98 Identities=16% Similarity=0.324 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeec--CCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.|+.++-+++++.|.+.|+. .||= |-.. .+.+..+.+.+ ......+.. =...+..++.++.+.| +|.+.+
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~--~IEvG~P~~~~~~~~~~~~l~~---~~~~~~v~~-~~r~~~~di~~a~~~g-~~~i~i 90 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVD--YIELTSPAASPQSRADCEAIAK---LGLKAKILT-HIRCHMDDARIAVETG-VDGVDL 90 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHh---CCCCCcEEE-EecCCHHHHHHHHHcC-cCEEEE
Confidence 57899999999999999985 8998 4332 23333444432 111223321 1457888999999986 577766
Q ss_pred CCC----------CCchH----HHHHHHHHHHHcCCcEEEcc
Q 014886 316 KLA----------KVGVL----GALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 316 k~~----------k~Gi~----~~l~i~~~A~~~gi~~~~~~ 343 (416)
=.+ +.... .+.+++.+|+++|+.+..+.
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 321 11232 35677899999999987654
No 216
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=72.86 E-value=45 Score=32.45 Aligned_cols=111 Identities=19% Similarity=0.265 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EE----------EEeCC-CCC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SF----------ILDAN-EGY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L----------~vDaN-~~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+... .+.++.+++.+.+.+. .-++ .| -.+.+ ..+ ++++|.+|.+..
T Consensus 91 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 170 (288)
T TIGR00167 91 EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLT 170 (288)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhcc
Confidence 4456677899999999977 5778888887777652 1111 11 11111 225 499999998764
Q ss_pred Hh----------CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCC
Q 014886 253 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 253 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~ 310 (416)
.- .| .|-..|-. -|++-++++++ .+++|+.+ |=|-...++++++++.|..
T Consensus 171 gvD~LAvaiGt~HG---~y~~~p~~-Ld~~~L~~I~~----~v~vPLVlHGgSG~~~e~~~~ai~~Gi~ 231 (288)
T TIGR00167 171 GVDSLAAAIGNVHG---VYKGEPKG-LDFERLEEIQK----YVNLPLVLHGGSGIPDEEIKKAISLGVV 231 (288)
T ss_pred CCcEEeeccCcccc---ccCCCCCc-cCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCe
Confidence 31 22 24455532 46787888865 67899885 5666667789999988843
No 217
>PLN02858 fructose-bisphosphate aldolase
Probab=72.66 E-value=44 Score=39.83 Aligned_cols=105 Identities=11% Similarity=0.131 Sum_probs=68.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhCCCCceeeecC---CCCCCHHHHHHhHHhhhccCCCeEEeC-CCCCCHHHHHHHHHcC
Q 014886 233 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP---VHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRSLDDVKKIVKGN 308 (416)
Q Consensus 233 ~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP---~~~~d~~~~~~l~~~~r~~~~iPIa~d-Es~~~~~d~~~~i~~~ 308 (416)
.|=|-.-|+.+.+..+++.-++.+- +..|.=- +.....+ +......+.++..+||++. .+..+.+.+.+.++.|
T Consensus 1115 av~afn~~n~e~~~avi~aAe~~~s-PvIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~G 1192 (1378)
T PLN02858 1115 AVGAFNVYNLEGIEAVVAAAEAEKS-PAILQVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELG 1192 (1378)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHhCC-CEEEECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC
Confidence 3444455677777777777776553 2222111 0001122 1111111224668999976 4566889999999988
Q ss_pred CCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 309 LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 309 a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++-+++|-+..- +..++++.++|+++|+.+-
T Consensus 1193 -f~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VE 1227 (1378)
T PLN02858 1193 -FDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVE 1227 (1378)
T ss_pred -CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 799999999875 5568999999999999873
No 218
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=72.57 E-value=81 Score=29.20 Aligned_cols=143 Identities=16% Similarity=0.253 Sum_probs=96.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++....++.+.+-|++++-|-... ..-.+.|+++++..| +..+=|-.-.|++++.+. .+.|- .|
T Consensus 19 lr~~~~e~a~~~a~Ali~gGi~~IEITl~s--p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a----~~aGa--~f 88 (211)
T COG0800 19 IRGDDVEEALPLAKALIEGGIPAIEITLRT--PAALEAIRALAKEFP--EALIGAGTVLNPEQARQA----IAAGA--QF 88 (211)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCeEEEecCC--CCHHHHHHHHHHhCc--ccEEccccccCHHHHHHH----HHcCC--CE
Confidence 445689999999999999999999998863 234566778888877 788889999999986554 44664 37
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-CchHHHHHHHHHHHHcCCcEE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~Gi~~~l~i~~~A~~~gi~~~ 340 (416)
+=-|--..+ ..+.+ .+.++|+.-| +.|+.++..+++.| ++.+-+=+.. +|....++...- =--+++++
T Consensus 89 iVsP~~~~e---v~~~a----~~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~g-P~~~v~~~ 157 (211)
T COG0800 89 IVSPGLNPE---VAKAA----NRYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAG-PFPQVRFC 157 (211)
T ss_pred EECCCCCHH---HHHHH----HhCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcC-CCCCCeEe
Confidence 877865433 23333 2678999876 67888999999988 4776555554 353333332210 01236666
Q ss_pred EccCC
Q 014886 341 IGGMV 345 (416)
Q Consensus 341 ~~~~~ 345 (416)
+.+-+
T Consensus 158 pTGGV 162 (211)
T COG0800 158 PTGGV 162 (211)
T ss_pred ecCCC
Confidence 65543
No 219
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=72.42 E-value=52 Score=31.85 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EEE-E----eC----CCCC-CHHHHHHHHHHHHh-
Q 014886 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SFI-L----DA----NEGY-KPQEAVEVLEKLYE- 254 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L~-v----Da----N~~w-~~~~A~~~~~~L~~- 254 (416)
.+.++++.||+.+-+... .+.++.+++.+.+.+. .-++ .|- | |. ...| ++++|.+|.++..-
T Consensus 84 ~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD 163 (276)
T cd00947 84 LIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVD 163 (276)
T ss_pred HHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCC
Confidence 345567899999999977 5678888887777652 1111 110 1 11 1225 49999999987642
Q ss_pred ---------CCCCceeee-cCCCCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 255 ---------MGVTPVLFE-QPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 255 ---------~~l~~~~iE-eP~~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.|. |-. +| .-|++-++++++ .+++|+.+ |=|-...++++++++.|. .=+|+
T Consensus 164 ~LAvsiGt~HG~---Y~~~~p--~L~~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi-~KiNi 225 (276)
T cd00947 164 ALAVAIGTSHGA---YKGGEP--KLDFDRLKEIAE----RVNVPLVLHGGSGIPDEQIRKAIKLGV-CKINI 225 (276)
T ss_pred EEEeccCccccc---cCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCC-eEEEe
Confidence 221 333 44 346788888875 56899885 566667788999998874 33344
No 220
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=72.41 E-value=68 Score=30.51 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=52.1
Q ss_pred HHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCH
Q 014886 194 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 271 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~v-DaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~ 271 (416)
++.+.+.|.+.+.+-... +...-.+.++.+++.|..+.+.+ |+ ..++++...++++.+.+.+....+|=+-+-.-..
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P 169 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS-HMASPEELAEQAKLMESYGADCVYVTDSAGAMLP 169 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCH
Confidence 344556677776665542 22223334445555554443333 43 5567777777777777776654455555544445
Q ss_pred HHHHHhHHhhhccCCC-eEEe
Q 014886 272 EGLGHVSHIAKDKFGV-SVAA 291 (416)
Q Consensus 272 ~~~~~l~~~~r~~~~i-PIa~ 291 (416)
+...++.+.++++.+. ||..
T Consensus 170 ~~v~~lv~~l~~~~~~~~l~~ 190 (263)
T cd07943 170 DDVRERVRALREALDPTPVGF 190 (263)
T ss_pred HHHHHHHHHHHHhCCCceEEE
Confidence 5555544444444443 5543
No 221
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=72.27 E-value=34 Score=36.34 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+..++-+++|.+.|.+ .+==-++. .+.+.++.+++.++ ..+.+|+.+|=.. ++.-....++. +|-+.+.|+
T Consensus 43 D~~atv~Qi~~L~~aGce--iVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF-~~~~A~~a~~~--vdkiRINPG 117 (606)
T PRK00694 43 DVDGTVRQICALQEWGCD--IVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHF-FPQAAMHVADF--VDKVRINPG 117 (606)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCC-ChHHHHHHHHh--cCceEECCc
Confidence 344555555666666543 33222322 12344555544322 2478999999774 45544455554 899999999
Q ss_pred CCch-----------------------HHHHHHHHHHHHcCCcEEEccC
Q 014886 319 KVGV-----------------------LGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 319 k~Gi-----------------------~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
..|- .....+...|+++|+++-+|..
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN 166 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVN 166 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 9873 2467799999999999988654
No 222
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=71.99 E-value=55 Score=29.81 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCCEEEEecC--CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCc------eee
Q 014886 191 AELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP------VLF 262 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG--~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~------~~i 262 (416)
.++++++.+.|-..+=+... ..++.-.+.++.+|+.+ .-+|.|.. |.++++...+ .|..+ -|-
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~----~G~D~I~TTLsGYT 124 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAE----LGFDIIGTTLSGYT 124 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHH----TT-SEEE-TTTTSS
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHH----cCCCEEEcccccCC
Confidence 45667788899999988876 23355666788999987 88999984 5788765433 22210 133
Q ss_pred ecCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 014886 263 EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (416)
Q Consensus 263 EeP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v 313 (416)
++--. ..|++-+++|.+ .++||.+.=.+++++++.+.++.|+.-++
T Consensus 125 ~~t~~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV 171 (192)
T PF04131_consen 125 PYTKGDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV 171 (192)
T ss_dssp TTSTTSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred CCCCCCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE
Confidence 33322 235666676653 38999998899999999999999974443
No 223
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=71.90 E-value=21 Score=32.24 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeec--CCCC-CCHHHHHHhHHhhhccCCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 313 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~--d~~~~i~~~a~d~v 313 (416)
..+.+++.++++.|.+. +. |+|= |+-. .-.+..+.+++ ...++||..+-.+.+.. .++.+.+.| +|++
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~--~ieig~~~~~~~g~~~i~~i~~---~~~~~~i~~~~~v~~~~~~~~~~~~~aG-ad~i 81 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VD--IIEAGTPLIKSEGMEAVRALRE---AFPDKIIVADLKTADAGALEAEMAFKAG-ADIV 81 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CC--EEEcCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEEeccccHHHHHHHHhcC-CCEE
Confidence 35789999999999998 75 9998 6532 12344555543 13578999885555553 456677777 5888
Q ss_pred EeCCCCCchHHHHHHHHHHHHcCCcEEE
Q 014886 314 NIKLAKVGVLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 314 ~~k~~k~Gi~~~l~i~~~A~~~gi~~~~ 341 (416)
.+...- +.....++...++++|+++.+
T Consensus 82 ~~h~~~-~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 82 TVLGAA-PLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHHcCCeEEE
Confidence 765432 222345678889999999874
No 224
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=71.66 E-value=55 Score=30.61 Aligned_cols=114 Identities=20% Similarity=0.186 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC--------CCHHHHHHHHHHHHhCCCCcee
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG--------YKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~--~~~L~vDaN~~--------w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+.++++...|.. |+=+|...-.| +.++.+-+.++ .+-+.+|+... .++.+.++.+... .-.+.+.=
T Consensus 91 edv~~~l~~Ga~--~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~d 166 (233)
T cd04723 91 ENAQEWLKRGAS--RVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLD 166 (233)
T ss_pred HHHHHHHHcCCC--eEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEE
Confidence 445667777854 44566444456 77777777743 57789999665 3455554444433 11110000
Q ss_pred ee--cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 262 FE--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 262 iE--eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
+. --....|++.++++.+ .+.+|+..+=-+.+.+|+.++++.|+ +.+.
T Consensus 167 i~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G~-~~vi 216 (233)
T cd04723 167 IDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLGA-SGAL 216 (233)
T ss_pred cCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcCC-CEEE
Confidence 10 0112235666777764 57899999999999999999999884 5443
No 225
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=71.56 E-value=51 Score=31.46 Aligned_cols=93 Identities=16% Similarity=0.171 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCCCc--eeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchH
Q 014886 246 VEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (416)
Q Consensus 246 ~~~~~~L~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~ 323 (416)
.++++..++.|..- ..-|+-.-..+++.++.+++ .+++||..-.-+....++......| +|++.+..+-....
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~----~v~iPvl~kdfi~~~~qi~~a~~~G-AD~VlLi~~~l~~~ 147 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARA----AVSLPVLRKDFIIDPYQIYEARAAG-ADAILLIVAALDDE 147 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHH----hcCCCEEeeeecCCHHHHHHHHHcC-CCEEEEEeccCCHH
Confidence 45666666655321 12344444566777777764 6789999877788888998888888 59999988776555
Q ss_pred HHHHHHHHHHHcCCcEEEcc
Q 014886 324 GALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~ 343 (416)
...+++..|+.+|+.+++-.
T Consensus 148 ~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEe
Confidence 67788999999999987543
No 226
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=71.13 E-value=1.3e+02 Score=31.64 Aligned_cols=115 Identities=20% Similarity=0.300 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee---cCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 266 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---eP~ 266 (416)
.+.++.+++.|.+.+-+... .....-++.++.+|+..|+..+.+ -...|.++|.+.. +.+.. +|- -|-
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~----~aGad--~i~vg~g~g 301 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALI----EAGAD--AVKVGIGPG 301 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHH----HcCCC--EEEECCCCC
Confidence 56677778888888877653 233445666777887777777776 4455777776554 34543 441 011
Q ss_pred C-----------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 267 H-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 267 ~-----------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ ..+++.+.++++.. +..++||.+|--+.+..|+.+.+..|+ |.+.+
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~-~~~~~~viadGGi~~~~di~kAla~GA-~~v~~ 359 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAA-KKYGIPVIADGGIRYSGDIAKALAAGA-SAVML 359 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCCCCHHHHHHHHHhCC-CEEEE
Confidence 0 12344555554322 246899999999999999999999984 77765
No 227
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.23 E-value=48 Score=33.16 Aligned_cols=93 Identities=13% Similarity=0.172 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeec--CCCC-------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHR-------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe--P~~~-------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
.++.++=+++++.|.+.|+. .||- |..+ ++-+.++.+... ....++. -+.+..|+.+.++.|
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~--~IEvGs~vspk~vPqmad~~ev~~~i~~~--~~~~~~~----l~~n~~die~A~~~g- 134 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLP--VVEATSFVSPKWVPQLADAKDVMAAVRNL--EGARFPV----LTPNLKGFEAAIAAG- 134 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEECCCcCcccccccccHHHHHHHHHhc--cCCceeE----EcCCHHHHHHHHHcC-
Confidence 46888889999999999985 8984 3332 222334444321 1222222 235899999999987
Q ss_pred CCEEEeCCC----------CCchHH----HHHHHHHHHHcCCcEE
Q 014886 310 ADVINIKLA----------KVGVLG----ALEIIEVVRASGLNLM 340 (416)
Q Consensus 310 ~d~v~~k~~----------k~Gi~~----~l~i~~~A~~~gi~~~ 340 (416)
+|.+.+=++ +....+ ..+++.+|+++|+.+.
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 566554311 122333 4479999999999984
No 228
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.03 E-value=1.5e+02 Score=31.08 Aligned_cols=133 Identities=13% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHH-HHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCceee
Q 014886 187 PAEA-AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 187 ~~~~-~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~i 262 (416)
++++ ...++.+.+.|...|.+-... +.+.-...++.+++.|..+...++. ...++.+..+++++.+.+.|.....|
T Consensus 93 ~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i 172 (467)
T PRK14041 93 ADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI 172 (467)
T ss_pred cchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3443 333566677788887777653 2222222355555555444433432 23567777788888888877665577
Q ss_pred ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCCCC
Q 014886 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~---~~~~d~~~~i~~~a~d~v~~k~~k~ 320 (416)
=+..-.-......++-..++++.++||...=+. ........+++.| +|++..-++-+
T Consensus 173 ~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaG-ad~vD~sv~~~ 232 (467)
T PRK14041 173 KDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAG-ADMFDTAISPF 232 (467)
T ss_pred CCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeecccc
Confidence 777665555555555555555667777653111 1122334455666 57765444433
No 229
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=69.96 E-value=1.7e+02 Score=31.68 Aligned_cols=177 Identities=22% Similarity=0.300 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------hhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~g~~~~L~vDaN~----~w~--~~~A-~~~~ 249 (416)
.+.+++...+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+..=.++ +|. +++. ..++
T Consensus 23 ~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v 102 (592)
T PRK09282 23 MRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFV 102 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHH
Confidence 4567888888888889999988853311 24678899999998888877655432 333 2333 3466
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC-----CCCCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-----ESCRSLDDV----KKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d-----Es~~~~~d~----~~~i~~~a~d~v~~k~~k~ 320 (416)
+...+.++....+=.++. |.+.+....+..+ +.+.-+... ...++++.+ +++.+.| +|.+.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G-ad~I~i~Dt~- 177 (592)
T PRK09282 103 EKAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG-CDSICIKDMA- 177 (592)
T ss_pred HHHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcC-
Confidence 777777776556666664 3444433222222 234444322 233454443 3455566 6888887654
Q ss_pred c-hH--HHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 321 G-VL--GALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 321 G-i~--~~l~i~~~-A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
| .+ +..++... -++.++++-+|+...++++.+ -.++|.-....+++
T Consensus 178 G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~A--n~laAv~aGad~vD 227 (592)
T PRK09282 178 GLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPM--TYLKAVEAGVDIID 227 (592)
T ss_pred CCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHH--HHHHHHHhCCCEEE
Confidence 5 33 34444444 445688899988765555443 34444333334433
No 230
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=69.51 E-value=47 Score=33.32 Aligned_cols=141 Identities=16% Similarity=0.209 Sum_probs=77.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
..+++++.+..+.+.+.+|-.-=+.+- +.+.-.+.|++.-+. +..+++....+- .++ +...+ +|
T Consensus 9 ~~~~~~~~~lL~~A~~~~yAVgAfNv~-n~e~~~Avi~AAEe~--~sPvIlq~s~~~-----~~~---~~g~~-----~~ 72 (357)
T TIGR01520 9 VITGDDVHKLFQYAKENNFAIPAINCT-SSSTINAALEAAADV--KSPIIIQFSNGG-----AAF---IAGKG-----VK 72 (357)
T ss_pred ccCHHHHHHHHHHHHHCCceEEEEEeC-CHHHHHHHHHHHHHh--CCCEEEEcCcch-----hhh---cCCcc-----cc
Confidence 457788877777778888866555553 233333333333332 334555543311 111 11100 11
Q ss_pred cCCCCCC-HHH---HHHhHHhhhccCCCeEEeC-CCCCCH--HHHHHHHHcC----------CCCEEEeCCCCCc----h
Q 014886 264 QPVHRDD-WEG---LGHVSHIAKDKFGVSVAAD-ESCRSL--DDVKKIVKGN----------LADVINIKLAKVG----V 322 (416)
Q Consensus 264 eP~~~~d-~~~---~~~l~~~~r~~~~iPIa~d-Es~~~~--~d~~~~i~~~----------a~d~v~~k~~k~G----i 322 (416)
.=+|..+ ..+ +..+...+.++..+||++. ....+. +.+.++++.| .++-+++|.+..= +
T Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI 152 (357)
T TIGR01520 73 DEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENI 152 (357)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHH
Confidence 1111110 000 1111111224668999965 334465 4578888876 3899999999874 5
Q ss_pred HHHHHHHHHHHHcCCcEE
Q 014886 323 LGALEIIEVVRASGLNLM 340 (416)
Q Consensus 323 ~~~l~i~~~A~~~gi~~~ 340 (416)
..++++.++|+++|+.+-
T Consensus 153 ~~TrevVe~Ah~~GvsVE 170 (357)
T TIGR01520 153 EICVKYLKRMAKIKMWLE 170 (357)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 568999999999999873
No 231
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.10 E-value=2.4e+02 Score=33.13 Aligned_cols=133 Identities=9% Similarity=0.097 Sum_probs=86.8
Q ss_pred HHHH-HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCC----cEEE---EeCCC-CCCHHHHHHHHHHHHhCC
Q 014886 187 PAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD----SSFI---LDANE-GYKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 187 ~~~~-~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~----~~L~---vDaN~-~w~~~~A~~~~~~L~~~~ 256 (416)
|+++ ...++.+.+.|...|.+-=. .+++.=..-++++++.|.. +... +|.+. .|+.+...++++.+.+.|
T Consensus 623 pd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 623 PDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 4554 55667778899999998644 3444444457777776532 2233 45554 578999999999999998
Q ss_pred CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCCCC
Q 014886 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~---~~~~d~~~~i~~~a~d~v~~k~~k~ 320 (416)
.+...|-+-.-.-......+|...++++.++||...=+. ........+++.| +|++..-+.-+
T Consensus 703 ad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaG-ad~vD~ai~gl 768 (1143)
T TIGR01235 703 AHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAG-VDVVDVAVDSM 768 (1143)
T ss_pred CCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhC-CCEEEecchhh
Confidence 876788887766566666666555666778999763221 1223345566777 68865554443
No 232
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=69.07 E-value=1e+02 Score=30.99 Aligned_cols=94 Identities=21% Similarity=0.374 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCCceeeecCCCCC--CHHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC---C
Q 014886 246 VEVLEKLYEMGVTPVLFEQPVHRD--DWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLA---K 319 (416)
Q Consensus 246 ~~~~~~L~~~~l~~~~iEeP~~~~--d~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~---k 319 (416)
.+.++.|-+.++....|--.--.. ..+..+++++ ..+ +||.+|. +.|.+.++++++.| +|++.+=+. -
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~----~~~~~~viaGN-V~T~e~a~~L~~aG-ad~vkVGiGpGsi 183 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK----KFPDVPVIAGN-VVTYEGAKDLIDAG-ADAVKVGIGPGSI 183 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH----HSTTSEEEEEE-E-SHHHHHHHHHTT--SEEEESSSSSTT
T ss_pred HHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH----hCCCceEEecc-cCCHHHHHHHHHcC-CCEEEEeccCCcc
Confidence 445555555555433333221111 1223344433 444 9999885 78999999999998 699876533 1
Q ss_pred C--------c---hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 320 V--------G---VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 320 ~--------G---i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
| | ++.-.++++.|+.++++++-.+-+
T Consensus 184 CtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi 220 (352)
T PF00478_consen 184 CTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGI 220 (352)
T ss_dssp BHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-
T ss_pred cccccccccCCcHHHHHHHHHHHhhhccCceeecCCc
Confidence 2 3 344567889999999999886644
No 233
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=68.96 E-value=1.5e+02 Score=30.80 Aligned_cols=177 Identities=22% Similarity=0.276 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------hhHHHHHHHHHHHhCCCcEEE--EeC-C-CCCC--HHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFI--LDA-N-EGYK--PQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~g~~~~L~--vDa-N-~~w~--~~~A-~~~~ 249 (416)
.+.++..+.++.+.+.||..+-+--|.. -+.+.++++.+++..++.++. +=+ | -+|. ++++ ..++
T Consensus 23 ~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v 102 (448)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFV 102 (448)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHH
Confidence 3567888888888889999998853311 134788999999887877765 222 2 2452 3333 3466
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe----EE-eCCCCCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDDV----KKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP----Ia-~dEs~~~~~d~----~~~i~~~a~d~v~~k~~k~ 320 (416)
++..+.++...-+=.++. |...+....+..+ +.+.- |+ .+...++.+-+ +++.+.| +|.+.++=+-
T Consensus 103 ~~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~- 177 (448)
T PRK12331 103 QKSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMA- 177 (448)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-
Confidence 666677776445555554 3333333322222 23433 22 23344555433 4455666 6887776543
Q ss_pred c-hH--HHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 321 G-VL--GALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 321 G-i~--~~l~i~~~-A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
| ++ ...+++.. -++.++++.+|+-...+++. +-.++|.-....++|
T Consensus 178 G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~--AN~laAieaGad~vD 227 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAE--MTYLKAIEAGADIID 227 (448)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHH--HHHHHHHHcCCCEEE
Confidence 5 33 34444443 34568999998865555444 334444333344443
No 234
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=68.90 E-value=39 Score=33.44 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=45.2
Q ss_pred CCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 286 GVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 286 ~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
.+||++. ....+.+.+.+.++.| ++-+.+|.+..= +..++++.++|+++|+.+-
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 6898865 4567889999999998 799999999874 5568999999999999873
No 235
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.86 E-value=1.1e+02 Score=29.28 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=61.1
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-C---------------------ChhHHHHHHHHHHHhCCC--cE
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------------NLKEDIEVLRAIRAVHPD--SS 231 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~---------------------~~~~d~~~v~avr~~g~~--~~ 231 (416)
.-.|.+.+.-+.+...+.++.+.+.|-..+-+-+- . .++.-.+.++++|+. .+ +-
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~p~v 95 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKAPIV 95 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEE
Confidence 44577777767777777788888888888777663 1 223456667777753 22 23
Q ss_pred EEEeCCCC------------------------CCHHHHHHHHHHHHhCCCCceeeecCCCC
Q 014886 232 FILDANEG------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (416)
Q Consensus 232 L~vDaN~~------------------------w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (416)
||.=.|-- +..+++.++.+.++++++...++=-|..+
T Consensus 96 lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 96 IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 66666631 13467778888888888876677777664
No 236
>PRK12999 pyruvate carboxylase; Reviewed
Probab=68.69 E-value=1.7e+02 Score=34.39 Aligned_cols=150 Identities=10% Similarity=0.148 Sum_probs=94.1
Q ss_pred HHHHHH-HHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCC--cEE--E---EeCCCC-CCHHHHHHHHHHHHhCC
Q 014886 187 PAEAAE-LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD--SSF--I---LDANEG-YKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 187 ~~~~~~-~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~--~~L--~---vDaN~~-w~~~~A~~~~~~L~~~~ 256 (416)
|+.+.+ .++.+.+.|...|.|-.. .+++.=...++++++.|.. ..+ . +|+... ++++...++++.+.+.|
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444 477888899999888765 3333333346677776532 222 2 366554 89999999999999998
Q ss_pred CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEeCCCCCc-hH--H-HHHHH
Q 014886 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL--G-ALEII 329 (416)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~---~~~d~~~~i~~~a~d~v~~k~~k~G-i~--~-~l~i~ 329 (416)
.+...|-+-.-.-......++-..+|++.++||...=+.. ........++.| +|++..-+.-+| .+ . .-.++
T Consensus 705 a~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aG-ad~vD~av~glg~~tgn~~le~vv 783 (1146)
T PRK12999 705 AHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAG-VDIVDVAVASMSGLTSQPSLNSIV 783 (1146)
T ss_pred CCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhC-CCEEEecchhhcCCcCCHHHHHHH
Confidence 8767888887666666666665556667889997632211 222345566777 688766665554 33 2 23444
Q ss_pred HHHHHcCC
Q 014886 330 EVVRASGL 337 (416)
Q Consensus 330 ~~A~~~gi 337 (416)
...+..|.
T Consensus 784 ~~L~~~~~ 791 (1146)
T PRK12999 784 AALEGTER 791 (1146)
T ss_pred HHHHhcCC
Confidence 44454444
No 237
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=68.64 E-value=1.5e+02 Score=30.76 Aligned_cols=127 Identities=10% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCceeeecCCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (416)
.+.++++.+.|.+.|.+-.. .+...-.+.++.+++.|..+...+-. ...++++...++++.+.+.|.....|-+-.-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG 178 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 44556666777777776655 23322222345555555433322211 1345677777777777777765556666665
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCC
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~dEs~---~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
.-......++-..++++.++||...=+. ........+++.| +|++..-++
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaG-ad~vD~sv~ 231 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAG-ADIIDTAIS 231 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcC-CCEEEeecc
Confidence 5555555555544555566777652111 1122334455666 566544443
No 238
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.62 E-value=96 Score=29.05 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEEecCCC---------------hhHHHHHHHHHHHhCCCcEEEE-eCCC-CCCHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVGKN---------------LKEDIEVLRAIRAVHPDSSFIL-DANE-GYKPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~---------------~~~d~~~v~avr~~g~~~~L~v-DaN~-~w~~~~A~~~~~~L~~ 254 (416)
+.++.+.+.|+..+.+-+... ++.-.+.++.+++.|-.+.+.+ |+.. ..++++..++++.+.+
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 344555667777777666532 2222333444455454455555 4544 3788888888888888
Q ss_pred CCCC
Q 014886 255 MGVT 258 (416)
Q Consensus 255 ~~l~ 258 (416)
+++.
T Consensus 158 ~g~~ 161 (265)
T cd03174 158 AGAD 161 (265)
T ss_pred cCCC
Confidence 8764
No 239
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=68.20 E-value=49 Score=31.81 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHH-cCCCEEEEecCCChhHHHHHHHHHHHhC-CC-----cEEEEe-CCCCC-----C---HHHHHHHH
Q 014886 186 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVH-PD-----SSFILD-ANEGY-----K---PQEAVEVL 249 (416)
Q Consensus 186 ~~~~~~~~~~~~~~-~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~-----~~L~vD-aN~~w-----~---~~~A~~~~ 249 (416)
++++..+.+.+..+ .|...+||.=| ++-.++|+++++++ |= ..=.-| ..++| + .+++++-+
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra 167 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDA 167 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHH
Confidence 56776666665655 89999999855 45567888888864 30 000111 11112 2 46788888
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 290 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa 290 (416)
+.+++.|....++|-+ +. +..+++++ ++++|+.
T Consensus 168 ~a~~eAGA~~i~lE~v-~~---~~~~~i~~----~l~iP~i 200 (264)
T PRK00311 168 KALEEAGAFALVLECV-PA---ELAKEITE----ALSIPTI 200 (264)
T ss_pred HHHHHCCCCEEEEcCC-CH---HHHHHHHH----hCCCCEE
Confidence 8999988765677777 32 34666764 6788886
No 240
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=68.08 E-value=42 Score=35.90 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC-CCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+..++-+++|.+.|.+ .+==-++. .+.+.++.+++.++ ..+.+|+.+|=... +.-....++. +|-+.+.|+
T Consensus 39 D~~atv~Qi~~l~~aGce--iVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~-~~~A~~a~~~--v~kiRINPG 113 (611)
T PRK02048 39 DTEACVAQAKRIIDAGGE--YVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFN-PKVADVAAQY--AEKVRINPG 113 (611)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCC-cHHHHHHHHh--hCCEEECCC
Confidence 344455555566665543 33222322 12344455544221 34689999997744 4434445553 899999999
Q ss_pred CCc-h----------------------HHHHHHHHHHHHcCCcEEEccC
Q 014886 319 KVG-V----------------------LGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 319 k~G-i----------------------~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
..| - .....++..|+++|+++-+|..
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN 162 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN 162 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 987 3 2456789999999999988654
No 241
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=68.03 E-value=1.4e+02 Score=30.14 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC---Cc-hHHHHH-HHHHHHHc--CCcEEE
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK---VG-VLGALE-IIEVVRAS--GLNLMI 341 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k---~G-i~~~l~-i~~~A~~~--gi~~~~ 341 (416)
-+|+.+++|++ .+++||..-|-. +.+|++.+++.| +|++.+.-.- .+ ...+.. +.+++++. .++++.
T Consensus 211 ~tW~di~wlr~----~~~~PiivKgV~-~~~dA~~a~~~G-vd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 211 LSWKDVQWLQT----ITKLPILVKGVL-TGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 284 (367)
T ss_pred CCHHHHHHHHh----ccCCCEEeecCC-CHHHHHHHHHcC-CCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 35777888864 789999999985 789999999998 6887665331 11 112233 33344443 488888
Q ss_pred ccCCchHHHHHHHHHH
Q 014886 342 GGMVETRLAMGFAGHL 357 (416)
Q Consensus 342 ~~~~es~ig~~a~~hl 357 (416)
.+-+.++.-..-++.|
T Consensus 285 dGGIr~G~Dv~KALAL 300 (367)
T PLN02493 285 DGGVRRGTDVFKALAL 300 (367)
T ss_pred eCCcCcHHHHHHHHHc
Confidence 8877666555444444
No 242
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=67.76 E-value=60 Score=30.13 Aligned_cols=69 Identities=14% Similarity=0.220 Sum_probs=31.8
Q ss_pred HHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC-CeEE
Q 014886 222 AIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVA 290 (416)
Q Consensus 222 avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~-iPIa 290 (416)
..++.+.++.+...-...+++++..++++.+.+++.....|-+-.-.-......++-+.+++..+ +||.
T Consensus 116 ~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~ 185 (237)
T PF00682_consen 116 YAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLG 185 (237)
T ss_dssp HHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEE
T ss_pred HHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEE
Confidence 33334444455554455556666666666666555543445544443334444443333333333 4444
No 243
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=67.32 E-value=1.9e+02 Score=31.30 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeC---C-CCCC--HHHH-HHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDA---N-EGYK--PQEA-VEVLE 250 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~g~~~~L~vDa---N-~~w~--~~~A-~~~~~ 250 (416)
+.+++...+..+.+.||..+-+--|. --+.+.+|++++|+..|+.+|-+=. | =+|. +++. ..+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 46777777888888999888876552 2257889999999998887664332 2 1232 3333 44888
Q ss_pred HHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCC----eEEe-CCCCCCHHHHHH----HHHcCCCCEEEeCCCCCc
Q 014886 251 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAA-DESCRSLDDVKK----IVKGNLADVINIKLAKVG 321 (416)
Q Consensus 251 ~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~i----PIa~-dEs~~~~~d~~~----~i~~~a~d~v~~k~~k~G 321 (416)
...+.|+.+..+=+++.. .+.+..-.+..++ .+. -|+. .-..+|.+.+.+ +.+.| +|.+.++=+- |
T Consensus 104 ~a~~~Gidv~Rifd~lnd--~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALND--ARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCcc--hHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-c
Confidence 888888877777777653 3333221111122 221 2222 334677776544 44556 6888887654 5
Q ss_pred -hH--HHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 322 -VL--GALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 322 -i~--~~l~i~~~-A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
++ .+.++... -++.++++-+|+-...+++. +..++|.-....++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~--an~laAieaGad~iD 227 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGLAS--ICHYEAVLAGCNHID 227 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHH--HHHHHHHHhCCCEEE
Confidence 43 34444333 34568999999875555554 334444333334443
No 244
>PRK09389 (R)-citramalate synthase; Provisional
Probab=67.28 E-value=93 Score=32.71 Aligned_cols=103 Identities=19% Similarity=0.376 Sum_probs=67.7
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCceeeec--CCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+|+ |+.++-+++++.|.+.|+. .||= |.. +.|++..+++.+ ......|+.-=. ....|+..+++.
T Consensus 12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~~~~d~e~v~~i~~---~~~~~~i~a~~r-~~~~di~~a~~~ 85 (488)
T PRK09389 12 DGEQTPGVSLTPEEKLEIARKLDELGVD--VIEAGSAITSEGEREAIKAVTD---EGLNAEICSFAR-AVKVDIDAALEC 85 (488)
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHcCCC--EEEEeCCcCCHHHHHHHHHHHh---cCCCcEEEeecc-cCHHHHHHHHhC
Confidence 56664 5889999999999999985 9998 543 456676776653 233444443222 346788888887
Q ss_pred CCCCEEEeCCCCCc--------------hHHHHHHHHHHHHcCCcEEEccC
Q 014886 308 NLADVINIKLAKVG--------------VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 308 ~a~d~v~~k~~k~G--------------i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
| ++.+.+=....- +..+.+.+.+|+++|+.+..+.+
T Consensus 86 g-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 86 D-VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred C-cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 7 466554322211 12356678899999998876554
No 245
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=67.14 E-value=11 Score=38.36 Aligned_cols=66 Identities=26% Similarity=0.385 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCCceeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC
Q 014886 247 EVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 319 (416)
Q Consensus 247 ~~~~~L~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k 319 (416)
.+.+..++ +....|+|-|..| -|++.++++++ +.++.|+.|+++.++ -+.+.+..| +|++.--.+|
T Consensus 154 ~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~----~~g~~vvVDnTf~~p-~~~~pL~lG-ADIV~hSaTK 223 (409)
T KOG0053|consen 154 KILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAH----KYGFLVVVDNTFGSP-YNQDPLPLG-ADIVVHSATK 223 (409)
T ss_pred HHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHh----hCCCEEEEeCCcCcc-cccChhhcC-CCEEEEeeee
Confidence 34444555 3345799999876 47888888875 679999999999988 345566777 6998876666
No 246
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=67.01 E-value=1.8e+02 Score=31.07 Aligned_cols=141 Identities=17% Similarity=0.212 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~----g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
.+.+..++++.++.+.|...+.+-+-. .++.+.++.|++. |-.+.|..|-+- ++.-|+..++.++...+++-
T Consensus 42 ~D~~atv~Qi~~L~~aGceiVRvtvp~--~~~A~al~~I~~~L~~~g~~iPLVADIHF--~~~~A~~a~~~vdkiRINPG 117 (606)
T PRK00694 42 TDVDGTVRQICALQEWGCDIVRVTVQG--LKEAQACEHIKERLIQQGISIPLVADIHF--FPQAAMHVADFVDKVRINPG 117 (606)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhccCCCCCEEeecCC--ChHHHHHHHHhcCceEECCc
Confidence 345677889999999999999988753 5677777777664 567889999875 55555555665554433210
Q ss_pred ---e----eecCCCCC-C--------HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 261 ---L----FEQPVHRD-D--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 261 ---~----iEeP~~~~-d--------~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
. |+.-.-.| + .+.+..+.... +..++||=.|-+..++.+ ++++.-. | +--| +.
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~a-ke~~~~IRIGvN~GSL~~--~i~~~yG-~------tpegmVe 187 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKC-KRLGKAMRIGVNHGSLSE--RVMQRYG-D------TIEGMVY 187 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHH-HHCCCCEEEecCCcCchH--HHHHHhC-C------CHHHHHH
Confidence 1 11111111 1 11222232222 256899999988888863 3443211 2 2347 55
Q ss_pred HHHHHHHHHHHcCCcE
Q 014886 324 GALEIIEVVRASGLNL 339 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~ 339 (416)
.+++-+.+|+++|..=
T Consensus 188 SAle~~~i~e~~~f~d 203 (606)
T PRK00694 188 SALEYIEVCEKLDYRD 203 (606)
T ss_pred HHHHHHHHHHHCCCCc
Confidence 6899999999988763
No 247
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.69 E-value=1.3e+02 Score=29.03 Aligned_cols=95 Identities=21% Similarity=0.315 Sum_probs=65.8
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------------CChhHHHHHHHHHHHhCCC--cE
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SS 231 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------------~~~~~d~~~v~avr~~g~~--~~ 231 (416)
.-.|.+.+.-+++...+.++.+.+.|-..+-+-+- -.++.-.+.++.+|+.+.+ +-
T Consensus 19 ~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Piv 98 (265)
T COG0159 19 LIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIV 98 (265)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 34577777777788888888888888888877662 1345667788888877655 34
Q ss_pred EEEeCCCCC------------------------CHHHHHHHHHHHHhCCCCceeeecCCCCCC
Q 014886 232 FILDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 270 (416)
Q Consensus 232 L~vDaN~~w------------------------~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d 270 (416)
||.=.|--| .++++.++.+..+++++.+.++=-|..+++
T Consensus 99 lm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~ 161 (265)
T COG0159 99 LMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDE 161 (265)
T ss_pred EEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 555555422 346667788888888887778878877643
No 248
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=65.94 E-value=87 Score=30.38 Aligned_cols=93 Identities=16% Similarity=0.289 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeec---------CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQ---------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEe---------P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
.++.++-+++++.|.+.|+. .||= |-..+..+.++.+.+ ..+..+.. .+.+..++.+.++.|
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~--~IEvgsf~~p~~~p~~~d~~e~~~~l~~----~~~~~~~~--l~~~~~~ie~A~~~g- 92 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLS--YIEVASFVSPKWVPQMADAAEVMAGIQR----RPGVTYAA--LTPNLKGLEAALAAG- 92 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCC--EEEeCCCcCcccccccccHHHHHHhhhc----cCCCeEEE--EecCHHHHHHHHHcC-
Confidence 46889999999999999985 8885 332334444555532 22344432 235889999999886
Q ss_pred CCEEEeCCC--------CCc--hH----HHHHHHHHHHHcCCcEE
Q 014886 310 ADVINIKLA--------KVG--VL----GALEIIEVVRASGLNLM 340 (416)
Q Consensus 310 ~d~v~~k~~--------k~G--i~----~~l~i~~~A~~~gi~~~ 340 (416)
+|.+.+=.+ +.| .. ...+++.+|+++|+.+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 576654322 222 22 35678999999999874
No 249
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=65.82 E-value=17 Score=35.40 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=44.8
Q ss_pred ccCCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++||++. ....+.+.+.+.++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 70 ~~~~vPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 70 EEASVPVALHLDHGKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HHSTSEEEEEEEEE-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHcCCCEEeecccCCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 3668999965 4567899999999997 799999999874 5568999999999998873
No 250
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=65.22 E-value=1.3e+02 Score=28.82 Aligned_cols=177 Identities=23% Similarity=0.307 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeCC----CCCC--HHH-HHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQE-AVEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~g~~~~L~vDaN----~~w~--~~~-A~~~~ 249 (416)
.+.++..+.+..+.+.|+..+-+-.+. --+.+.++++.+++..++.+|..=++ -+|. +.. -...+
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di 97 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFV 97 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHH
Confidence 356777778888889999998776542 13577889999998876665542121 1221 111 23466
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe-----CCCCCCHHHHHH----HHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-----DESCRSLDDVKK----IVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~-----dEs~~~~~d~~~----~i~~~a~d~v~~k~~k~ 320 (416)
+...+.++....+-.|+. +++.+....+.++ ..+.-+.. +-+.++...+.+ +.+.| +|.+.+.=+-
T Consensus 98 ~~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak-~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~l~DT~- 172 (275)
T cd07937 98 EKAAKNGIDIFRIFDALN--DVRNLEVAIKAVK-KAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-ADSICIKDMA- 172 (275)
T ss_pred HHHHHcCCCEEEEeecCC--hHHHHHHHHHHHH-HCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-
Confidence 667777765345655654 4554444333232 23444332 224556555543 34556 5776665443
Q ss_pred c-hH--HHHHHHHHH-HHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 321 G-VL--GALEIIEVV-RASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 321 G-i~--~~l~i~~~A-~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
| .+ +..++.... +..++++.+|+-...+++ .+-.++|.-....+++
T Consensus 173 G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA--~aN~laA~~aGa~~vd 222 (275)
T cd07937 173 GLLTPYAAYELVKALKKEVGLPIHLHTHDTSGLA--VATYLAAAEAGVDIVD 222 (275)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEecCCCChH--HHHHHHHHHhCCCEEE
Confidence 5 33 444544444 456788888886544444 4334444323344544
No 251
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=65.05 E-value=1.1e+02 Score=28.84 Aligned_cols=117 Identities=16% Similarity=0.008 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC--C--------CCC--HHHHHHHHHHHHhCCCC
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN--E--------GYK--PQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vDaN--~--------~w~--~~~A~~~~~~L~~~~l~ 258 (416)
+.++.+.+.|... +-+|.-.-+|.+.++.+.+.+ ..+-+.+|+. + +|+ .....+++++++++++.
T Consensus 87 e~~~~~l~~Ga~~--vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~ 164 (243)
T TIGR01919 87 SSLRAALTGGRAR--VNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCS 164 (243)
T ss_pred HHHHHHHHcCCCE--EEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCC
Confidence 3456677778764 455633334666777777764 4567888884 2 353 22455778888888764
Q ss_pred ceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 014886 259 PVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 315 (416)
Q Consensus 259 ~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--~a~d~v~~ 315 (416)
.+|=--+.. .|++.++++++ .+++||.+.=-+.+.+|+.++-+. ..++.+.+
T Consensus 165 -~ii~tdI~~dGt~~G~d~~l~~~l~~----~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 165 -RVVVTDSKKDGLSGGPNELLLEVVAA----RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred -EEEEEecCCcccCCCcCHHHHHHHHh----hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence 455444432 35666777764 578999988889999999887432 23454433
No 252
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=64.76 E-value=2.1e+02 Score=30.94 Aligned_cols=148 Identities=9% Similarity=0.050 Sum_probs=93.0
Q ss_pred HHHH-HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCC----cEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 187 PAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD----SSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 187 ~~~~-~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~----~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
|+++ ...++.+.+.|...|.+--. .+++.-..-++++++.|.. +.++. +-.+|++...++++.+.+.|.+..
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~--sp~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT--SPVHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC--CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3444 45667788899999877654 3444444457888887643 22444 347899999999999999988767
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEeCCCCCc-hH---HHHHHHHHHH
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVR 333 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~---~~~d~~~~i~~~a~d~v~~k~~k~G-i~---~~l~i~~~A~ 333 (416)
.|-+-.-.-......++-..++++.++||...=+.. .......+++.| +|++..-+.-+| .+ ..-.++...+
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG-ad~iD~ai~glGg~tGn~~tE~lv~~L~ 250 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG-CNHIDTAISSFSGGASHPPTEALVAALT 250 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC-CCEEEeccccccCCCCcHhHHHHHHHHH
Confidence 888887665666666665556667789987642211 122334566777 687655554443 21 2334455555
Q ss_pred HcCC
Q 014886 334 ASGL 337 (416)
Q Consensus 334 ~~gi 337 (416)
..|.
T Consensus 251 ~~g~ 254 (596)
T PRK14042 251 DTPY 254 (596)
T ss_pred hcCC
Confidence 4444
No 253
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=64.61 E-value=66 Score=32.18 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=80.7
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHhCCCC---------ceeeecCCCCCCH----------------HHHHHhHHhh--h
Q 014886 230 SSFILDANEGYKPQEAVEVLEKLYEMGVT---------PVLFEQPVHRDDW----------------EGLGHVSHIA--K 282 (416)
Q Consensus 230 ~~L~vDaN~~w~~~~A~~~~~~L~~~~l~---------~~~iEeP~~~~d~----------------~~~~~l~~~~--r 282 (416)
.-+++=...--+.++|++++++|.+.+-+ -.++|-|-....| +|++.+++.+ .
T Consensus 54 llvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~ 133 (349)
T PRK09261 54 LLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDI 133 (349)
T ss_pred eEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHH
Confidence 34445555666899999999998765410 1378888654333 4555544432 2
Q ss_pred ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 283 ~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G--i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
..+++|++..=. ++.....+.+ .+|+.++ | -++.....++|...++++.+-..+++.+..+..+-.|++
T Consensus 134 ~e~GlpvatE~l--d~~~~~y~~d--lvs~~~I-----GARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~ 204 (349)
T PRK09261 134 NELGLPAATEFL--DPITPQYIAD--LISWGAI-----GARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIAAS 204 (349)
T ss_pred HHhCCCeEEEec--ccccHHHHHh--hcceeee-----ccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHh
Confidence 468999987532 2222222222 3566655 6 456777889999999999998888888888777777776
Q ss_pred CCC
Q 014886 361 LGC 363 (416)
Q Consensus 361 ~~~ 363 (416)
.|.
T Consensus 205 ~~H 207 (349)
T PRK09261 205 APH 207 (349)
T ss_pred CCc
Confidence 654
No 254
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=64.58 E-value=93 Score=27.94 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCC-HHHHHHhHHhhhccCC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~r~~~~-iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
+.+++.++++.+.+.|+. ++|=.+...+ .+.++.+++ ..+ +.|-.| ++.+..++..+++.|+ |++..-
T Consensus 14 ~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~----~~~~~~iGag-~v~~~~~~~~a~~~Ga-~~i~~p-- 83 (190)
T cd00452 14 DAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRK----EFPEALIGAG-TVLTPEQADAAIAAGA-QFIVSP-- 83 (190)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcCC-CEEEcC--
Confidence 588889999999998875 9998887543 334555543 333 555554 5778889999999885 777421
Q ss_pred CCchHHHHHHHHHHHHcCCcEEEccCC
Q 014886 319 KVGVLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 319 k~Gi~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
|.. ..+.+.++.+|++++++++.
T Consensus 84 --~~~--~~~~~~~~~~~~~~i~gv~t 106 (190)
T cd00452 84 --GLD--PEVVKAANRAGIPLLPGVAT 106 (190)
T ss_pred --CCC--HHHHHHHHHcCCcEECCcCC
Confidence 222 35678888999999998873
No 255
>PRK08185 hypothetical protein; Provisional
Probab=64.56 E-value=1.1e+02 Score=29.74 Aligned_cols=119 Identities=13% Similarity=0.227 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EE----------EEeCCCC-C-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SF----------ILDANEG-Y-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L----------~vDaN~~-w-~~~~A~~~~~~L 252 (416)
+.++++++.||+.+-+.-. .+.++.++..+.+.+. .-++ .| .++.+.. + ++++|.++.+..
T Consensus 82 e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~T 161 (283)
T PRK08185 82 EDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRT 161 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhh
Confidence 3455667899999999876 4677888877777642 1111 11 1111111 4 699999998864
Q ss_pred H-h-CCC-----CceeeecCC-CCCCHHHHHHhHHhhhccCCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 253 Y-E-MGV-----TPVLFEQPV-HRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 253 ~-~-~~l-----~~~~iEeP~-~~~d~~~~~~l~~~~r~~~~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
. + +-+ + -.++..+ +.-+++.++++++ .+++|+.+ |=|-...++++++++.|. .=+|+.
T Consensus 162 gvD~LAvaiGt~H-G~y~~~~kp~L~~e~l~~I~~----~~~iPLVlHGgsg~~~e~~~~ai~~GI-~KiNi~ 228 (283)
T PRK08185 162 GVDTLAVAIGTAH-GIYPKDKKPELQMDLLKEINE----RVDIPLVLHGGSANPDAEIAESVQLGV-GKINIS 228 (283)
T ss_pred CCCEEEeccCccc-CCcCCCCCCCcCHHHHHHHHH----hhCCCEEEECCCCCCHHHHHHHHHCCC-eEEEeC
Confidence 1 1 111 1 0123332 3346888888864 67899884 555566788999999884 444553
No 256
>PRK08508 biotin synthase; Provisional
Probab=64.51 E-value=1e+02 Score=29.69 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEcc
Q 014886 322 VLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~ 343 (416)
..+-++.+..|++.|+++..+.
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred HHHHHHHHHHHHHcCCeeccee
Confidence 4566777788888898874433
No 257
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=64.41 E-value=96 Score=29.59 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCEEEEecC--CChhHHHHHHHHHHHh-CC-CcEEEEeCC----C-------CCCH---HHHH-HHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAV-HP-DSSFILDAN----E-------GYKP---QEAV-EVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG--~~~~~d~~~v~avr~~-g~-~~~L~vDaN----~-------~w~~---~~A~-~~~~~L 252 (416)
+.++++.+.|...+=+--. .++..+.+.++.+.+. |+ .+.+.+|+. + +|.. -++. ++++.+
T Consensus 88 e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~ 167 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEEL 167 (253)
T ss_pred HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHH
Confidence 4567788889876544211 1222346788888888 44 467889985 2 3532 1344 666777
Q ss_pred HhCCCCceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeC
Q 014886 253 YEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIK 316 (416)
Q Consensus 253 ~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--~a~d~v~~k 316 (416)
++. +. ..+=.=+.. .|++.++++++ ..++||.+.=-+.+.+|+.++-+. +..+++.-+
T Consensus 168 ~~~-~~-~il~TdI~rDGtl~G~dlel~~~l~~----~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~ 233 (253)
T TIGR02129 168 SKY-CD-EFLIHAADVEGLCKGIDEELVSKLGE----WSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGS 233 (253)
T ss_pred Hhh-CC-EEEEeeecccCccccCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeee
Confidence 665 43 333333322 36777787764 688999988889999999988443 455665443
No 258
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=64.40 E-value=1.6e+02 Score=29.35 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCceeeec
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 264 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEe 264 (416)
+.+...+++.++.+.|...+.+-+-. .++.+.+..+++.. ++.|..|-+-- ..-|++..+. ++.+.++
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~--~e~A~A~~~Ik~~~-~vPLVaDiHf~--~rla~~~~~~g~~k~RIN------ 102 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPD--MEAAEALKEIKQRL-NVPLVADIHFD--YRLALEAAECGVDKVRIN------ 102 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhC-CCCEEEEeecc--HHHHHHhhhcCcceEEEC------
Confidence 45667888999999999999998854 57888888888865 68899998755 5556666555 5555544
Q ss_pred CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH-HHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCc
Q 014886 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d-~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~ 338 (416)
|-.-..-+..+.+.+.. ++.++||-.|-+..+++. +.+-. + .++.=+ +..++.-+.+++++|..
T Consensus 103 PGNig~~~~v~~vVe~A-k~~g~piRIGVN~GSLek~~~~ky--~-------~pt~ealveSAl~~a~~~e~l~f~ 168 (361)
T COG0821 103 PGNIGFKDRVREVVEAA-KDKGIPIRIGVNAGSLEKRLLEKY--G-------GPTPEALVESALEHAELLEELGFD 168 (361)
T ss_pred CcccCcHHHHHHHHHHH-HHcCCCEEEecccCchhHHHHHHh--c-------CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 44433333455554433 367999999988888763 32211 1 223335 34567777777777765
No 259
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=64.18 E-value=1.4e+02 Score=28.59 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=87.9
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-C---------------------ChhHHHHHHHHHHHhCCCcE--
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------------NLKEDIEVLRAIRAVHPDSS-- 231 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~---------------------~~~~d~~~v~avr~~g~~~~-- 231 (416)
.-.|.+.+.-+.+...+.+..+.+.|...+-+-+- . .++.-.+.++++|+..++..
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 44577777777788888888888889988877663 1 23345677788885544444
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCC-HHHHHHHHHcCCC
Q 014886 232 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLA 310 (416)
Q Consensus 232 L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~-~~d~~~~i~~~a~ 310 (416)
+|.=.|--|..-. -+|++.+.+.++.=.-+ =-++.++.+.+....+ +.++....==+-.+ .+.++.+.+. +-
T Consensus 94 lm~Y~N~i~~~G~-e~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~----~~gl~~I~lvap~t~~eri~~i~~~-s~ 166 (258)
T PRK13111 94 LMTYYNPIFQYGV-ERFAADAAEAGVDGLII-PDLPPEEAEELRAAAK----KHGLDLIFLVAPTTTDERLKKIASH-AS 166 (258)
T ss_pred EEecccHHhhcCH-HHHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHH----HcCCcEEEEeCCCCCHHHHHHHHHh-CC
Confidence 5555675443211 25777888776632222 2344444444444332 33433222112223 3444444433 33
Q ss_pred CEEEe--CCCCCch-----HHHHHHHHHHHH-cCCcEEEccCCchH
Q 014886 311 DVINI--KLAKVGV-----LGALEIIEVVRA-SGLNLMIGGMVETR 348 (416)
Q Consensus 311 d~v~~--k~~k~Gi-----~~~l~i~~~A~~-~gi~~~~~~~~es~ 348 (416)
+++-. -.+..|. ..........++ .++++++|..+.++
T Consensus 167 gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~ 212 (258)
T PRK13111 167 GFVYYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTP 212 (258)
T ss_pred CcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCH
Confidence 43322 1122232 123334444444 48999987765443
No 260
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=64.14 E-value=1.2e+02 Score=29.97 Aligned_cols=96 Identities=16% Similarity=0.266 Sum_probs=59.5
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCc----EEE---------EeCCCCC-CHHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDS----SFI---------LDANEGY-KPQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~----~L~---------vDaN~~w-~~~~A~~~~~~L~~ 254 (416)
+.+.++++.||+.+-+... .+.++.++..+.+.+. .-++ .|- .+....| ++++|.+|.++..-
T Consensus 99 e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~Tgv 178 (321)
T PRK07084 99 ELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGV 178 (321)
T ss_pred HHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCC
Confidence 3466778899999999977 5678888887777652 1111 111 0112225 49999999986431
Q ss_pred ----------CCCCceeeecC---CCCCCHHHHHHhHHhhhccC-CCeEEeCCC
Q 014886 255 ----------MGVTPVLFEQP---VHRDDWEGLGHVSHIAKDKF-GVSVAADES 294 (416)
Q Consensus 255 ----------~~l~~~~iEeP---~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs 294 (416)
.|. |-..| -+.-|++-++++++ .+ ++|+.+.=.
T Consensus 179 D~LAvaiGt~HG~---Y~~~~~~~~p~Ld~d~L~~I~~----~~~~vPLVLHGg 225 (321)
T PRK07084 179 DSLAISIGTSHGA---YKFKPGQCPPPLRFDILEEIEK----RIPGFPIVLHGS 225 (321)
T ss_pred CEEeecccccccc---ccCCCCCCCCccCHHHHHHHHH----hcCCCCEEEeCC
Confidence 232 44422 13457888888875 56 699986543
No 261
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.05 E-value=1.2e+02 Score=28.62 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=12.4
Q ss_pred HhCCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 225 AVHPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 225 ~~g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
+.|.+.--..|..+..++++..++++.+.
T Consensus 150 ~~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 150 EAGADRLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 33333333344444444444444444443
No 262
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=63.55 E-value=3.9 Score=24.25 Aligned_cols=13 Identities=62% Similarity=0.887 Sum_probs=10.9
Q ss_pred cCCCCCCCCCCCc
Q 014886 22 MASSPPAAAAPTS 34 (416)
Q Consensus 22 ~~~~~~~~~~~~~ 34 (416)
|+||.||+.||.-
T Consensus 1 masstpaspapsd 13 (29)
T PF05570_consen 1 MASSTPASPAPSD 13 (29)
T ss_pred CCcCCCCCCCcHH
Confidence 7899999988864
No 263
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=63.29 E-value=1.4e+02 Score=28.57 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCCEEEEecC--CChhHHHHHHHHHHHh-CCC-cEEEEeCC---C-------CCC---HHHHHHHHHHHHh
Q 014886 192 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAV-HPD-SSFILDAN---E-------GYK---PQEAVEVLEKLYE 254 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG--~~~~~d~~~v~avr~~-g~~-~~L~vDaN---~-------~w~---~~~A~~~~~~L~~ 254 (416)
+.++++.+.|...+=|--- .+++-|.+.++.+-+. |++ +.+.+|+. + +|. --++.+++.++.+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~ 174 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA 174 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH
Confidence 5577888999877655321 2222347888888887 454 67789985 3 342 2244555555555
Q ss_pred CCCCceeeecCC------CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC--CCCEEEeCC
Q 014886 255 MGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--LADVINIKL 317 (416)
Q Consensus 255 ~~l~~~~iEeP~------~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~--a~d~v~~k~ 317 (416)
.++. .+|=.=+ .-.|++.++++++ .+.+||.+.=-+.+.+|+.++.+.+ ..+++.=|.
T Consensus 175 ~g~~-eii~TdI~rDGtl~G~d~el~~~l~~----~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkA 240 (262)
T PLN02446 175 AYCD-EFLVHGVDVEGKRLGIDEELVALLGE----HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSA 240 (262)
T ss_pred hCCC-EEEEEEEcCCCcccCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEee
Confidence 4442 2332222 2336777777764 6899999888899999999998874 344444444
No 264
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=63.04 E-value=1.3e+02 Score=33.51 Aligned_cols=128 Identities=14% Similarity=0.232 Sum_probs=77.7
Q ss_pred HHHH-HHHHHHHHHcCCCEEEEecCCChhHHHH-HHHHHHHhCC--CcEE-----EEeCCCC-CCHHHHHHHHHHHHhCC
Q 014886 187 PAEA-AELASKYRKQGFTTLKLKVGKNLKEDIE-VLRAIRAVHP--DSSF-----ILDANEG-YKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 187 ~~~~-~~~~~~~~~~G~~~~KiKvG~~~~~d~~-~v~avr~~g~--~~~L-----~vDaN~~-w~~~~A~~~~~~L~~~~ 256 (416)
|+.+ ...+++....|...|.|-=.-+.-+.++ -+.+|++.+. +..+ ++|.|.. |+++.-..+++.|+..|
T Consensus 628 PDnVi~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~G 707 (1149)
T COG1038 628 PDNVIREFVKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAG 707 (1149)
T ss_pred chHHHHHHHHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcC
Confidence 4543 5566777788999988763322212222 3778888752 3333 5777765 59999999999999988
Q ss_pred CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC---CCCCCHHHHHHHHHcCCCCEEEe
Q 014886 257 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD---ESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 257 l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d---Es~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.++.=|-+=----....-..|-..+|+.+++||-+. -|-........++++| +|++-.
T Consensus 708 aHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA~~AG-vDivD~ 768 (1149)
T COG1038 708 AHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAAVEAG-VDIVDV 768 (1149)
T ss_pred CcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEEeccCCCccHHHHHHHHHHcC-Cchhhh
Confidence 775444332111111222334445677889999753 3444455566677777 577633
No 265
>PLN02389 biotin synthase
Probab=62.72 E-value=1.3e+02 Score=30.62 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
..+.++.+..|++.|+++..|.++
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~Ii 235 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGII 235 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEEE
Confidence 567889999999999998766544
No 266
>PRK12999 pyruvate carboxylase; Reviewed
Probab=62.72 E-value=2.8e+02 Score=32.56 Aligned_cols=176 Identities=16% Similarity=0.229 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHHc--CCCEEEEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHH
Q 014886 186 SPAEAAELASKYRKQ--GFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEV 248 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~--G~~~~KiKvG~--------~~~~d~~~v~avr~~g~~~~L~vDaN~----~w~--~~~A-~~~ 248 (416)
+.+++...+..+.+. ||..+-+--|. --+.+.++++.+|+..|+..|..=..+ +|+ ++.. ..+
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 456777778888788 99888776552 125688999999999888766433332 454 2333 346
Q ss_pred HHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC----CeEEeC-------CCCCCHHHH----HHHHHcCCCCEE
Q 014886 249 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG----VSVAAD-------ESCRSLDDV----KKIVKGNLADVI 313 (416)
Q Consensus 249 ~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~----iPIa~d-------Es~~~~~d~----~~~i~~~a~d~v 313 (416)
++...+.++.+.-|=+++. |.+.+....+..++. + +-|+.- ...++..-+ +++.+.| +|.+
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G-a~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG-AHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC-CCEE
Confidence 8888888877666666665 355554433323322 3 233321 223455433 3445566 6888
Q ss_pred EeCCCCCc-hH--HHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 314 NIKLAKVG-VL--GALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 314 ~~k~~k~G-i~--~~l~i~~~-A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
.+|=+- | ++ .+.++... -++.++++-+|+-..++++. +-.++|.-....++|
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~--an~laA~~aGad~vD 764 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGL--ATYLAAAEAGVDIVD 764 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHH--HHHHHHHHhCCCEEE
Confidence 887654 6 44 34444433 34568999999876555544 334444333334433
No 267
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=62.59 E-value=1.7e+02 Score=29.00 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=44.1
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC-------CC----Cc---hHHHHHHHHHHHHcCCcEEEccCCchHHHHH
Q 014886 287 VSVAADESCRSLDDVKKIVKGNLADVINIKL-------AK----VG---VLGALEIIEVVRASGLNLMIGGMVETRLAMG 352 (416)
Q Consensus 287 iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~-------~k----~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~ 352 (416)
+||..+ ++.+.++.+.+++.| +|++.+-. ++ +| ++...++.+.++.++++++..+-+.++-...
T Consensus 136 v~Vi~G-~v~t~~~A~~l~~aG-aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~ 213 (325)
T cd00381 136 VDVIAG-NVVTAEAARDLIDAG-ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIV 213 (325)
T ss_pred ceEEEC-CCCCHHHHHHHHhcC-CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Confidence 787774 558888999999887 68887621 11 22 2233456677777899999866555544444
Q ss_pred HHHHH
Q 014886 353 FAGHL 357 (416)
Q Consensus 353 a~~hl 357 (416)
.++.+
T Consensus 214 kAla~ 218 (325)
T cd00381 214 KALAA 218 (325)
T ss_pred HHHHc
Confidence 44433
No 268
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=62.56 E-value=1.7e+02 Score=29.27 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC--CCC---chHHHHHHHHHHHHc--CCcEEEc
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL--AKV---GVLGALEIIEVVRAS--GLNLMIG 342 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~--~k~---Gi~~~l~i~~~A~~~--gi~~~~~ 342 (416)
.++.++++++ .+++||..-+ +.+.++++.+.+.| +|.+.+-- .+. |.....-+.+++++. .++++..
T Consensus 209 ~~~~l~~lr~----~~~~PvivKg-v~~~~dA~~a~~~G-~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d 282 (351)
T cd04737 209 SPADIEFIAK----ISGLPVIVKG-IQSPEDADVAINAG-ADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD 282 (351)
T ss_pred CHHHHHHHHH----HhCCcEEEec-CCCHHHHHHHHHcC-CCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence 4566777764 6789999886 46889999999887 68887731 111 222223344555555 4898887
Q ss_pred cCCchHHHHHH
Q 014886 343 GMVETRLAMGF 353 (416)
Q Consensus 343 ~~~es~ig~~a 353 (416)
+-+.++--..-
T Consensus 283 GGIr~g~Di~k 293 (351)
T cd04737 283 SGVRRGEHVFK 293 (351)
T ss_pred CCCCCHHHHHH
Confidence 77766544333
No 269
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=62.50 E-value=88 Score=33.03 Aligned_cols=116 Identities=16% Similarity=0.321 Sum_probs=66.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCC---HHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHH
Q 014886 231 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD---WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVK 306 (416)
Q Consensus 231 ~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d---~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~ 306 (416)
+|++=|.-+-+ .++.+.++.|-+.++.+..+--+ +-+. ++..+++++ .. +.+|..+ .+.|.++.+++++
T Consensus 236 ~l~vgaavg~~-~~~~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~----~~p~~~vi~g-~v~t~e~a~~a~~ 308 (505)
T PLN02274 236 KLLVGAAIGTR-ESDKERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKK----TYPELDVIGG-NVVTMYQAQNLIQ 308 (505)
T ss_pred CEEEEEEEcCC-ccHHHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHH----hCCCCcEEEe-cCCCHHHHHHHHH
Confidence 44444433322 23345566666666553344332 2221 234555543 33 4777665 4578999999999
Q ss_pred cCCCCEEEeCC-----------CCCc---hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHH
Q 014886 307 GNLADVINIKL-----------AKVG---VLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 354 (416)
Q Consensus 307 ~~a~d~v~~k~-----------~k~G---i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~ 354 (416)
.| +|++.+-. +.+| ++....+.+++++.+++++.-+-+.++--...+
T Consensus 309 aG-aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kA 369 (505)
T PLN02274 309 AG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKA 369 (505)
T ss_pred cC-cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHH
Confidence 88 69986521 1122 223456788888999999887766554333333
No 270
>PRK08508 biotin synthase; Provisional
Probab=62.50 E-value=1.5e+02 Score=28.50 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-CC-----ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKV-GK-----NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKv-G~-----~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~ 248 (416)
.+++++.+.++++.++|.+.|=+-. |. ..+.=.+.++.+++.+|++.+. -.++..+.+++.++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~-~s~G~~~~e~l~~L 108 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLI-ACNGTASVEQLKEL 108 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEE-ecCCCCCHHHHHHH
Confidence 5889999999998899999887732 22 2233355667777777776543 25666676665444
No 271
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=62.48 E-value=1.2e+02 Score=30.79 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC--------------CCHHHHHHhHHhhh
Q 014886 217 IEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR--------------DDWEGLGHVSHIAK 282 (416)
Q Consensus 217 ~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~--------------~d~~~~~~l~~~~r 282 (416)
++.++.+++..++..+.+---+..+.++-.++++.+++.+.. +||==+.. .+.+..+++.+..+
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD--~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk 178 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVD--ALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWIN 178 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHH
Confidence 333444444455666666665666677777777777776643 66643321 23444544444334
Q ss_pred ccCCCeEEeCC--CCCCHHHHHH
Q 014886 283 DKFGVSVAADE--SCRSLDDVKK 303 (416)
Q Consensus 283 ~~~~iPIa~dE--s~~~~~d~~~ 303 (416)
..+.+||..== .+.+..++.+
T Consensus 179 ~~~~iPv~vKLsPn~t~i~~ia~ 201 (385)
T PLN02495 179 AKATVPVWAKMTPNITDITQPAR 201 (385)
T ss_pred HhhcCceEEEeCCChhhHHHHHH
Confidence 44556666432 2334444444
No 272
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=62.42 E-value=96 Score=30.50 Aligned_cols=100 Identities=21% Similarity=0.343 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcE--------------EEEeCCC-CC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSS--------------FILDANE-GY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~--------------L~vDaN~-~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+... -+.++.+++.+.+.+. .-++. +..+.+. -| ++++|.+|.++.
T Consensus 88 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~T 167 (307)
T PRK05835 88 ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKES 167 (307)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhh
Confidence 4456678899999999977 4778888887777652 11111 1112222 25 499999999865
Q ss_pred Hh----------CCCCceee--ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHH
Q 014886 253 YE----------MGVTPVLF--EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 300 (416)
Q Consensus 253 ~~----------~~l~~~~i--EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d 300 (416)
.- .|. |- .+| .-|++-++++++ .+++|+.+.=.-..+++
T Consensus 168 gvD~LAvaiGt~HG~---Yk~~~~p--~L~f~~L~~I~~----~~~iPLVLHGgSGip~e 218 (307)
T PRK05835 168 QVDYLAPAIGTSHGA---FKFKGEP--KLDFERLQEVKR----LTNIPLVLHGASAIPDD 218 (307)
T ss_pred CCCEEEEccCccccc---cCCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCchH
Confidence 31 222 32 444 457888888865 67899997655454554
No 273
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=61.79 E-value=1.4e+02 Score=27.73 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec--CC-ChhHHHHHHHHHHHh--CCCcEEEEeCCCC-------CCHHHHHHHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKV--GK-NLKEDIEVLRAIRAV--HPDSSFILDANEG-------YKPQEAVEVLEKL 252 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKv--G~-~~~~d~~~v~avr~~--g~~~~L~vDaN~~-------w~~~~A~~~~~~L 252 (416)
.+.+....+++++.+.|-..+.+-+ +. +.++-.+.++++++. ..++++++|.... .+.++-.+.++..
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a 152 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIG 152 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHH
Confidence 3445556667888889999885544 42 222334456666653 3577888865331 2333333335555
Q ss_pred HhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe--CCCCCCHHH----HHHHHHcCCCCEE
Q 014886 253 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDD----VKKIVKGNLADVI 313 (416)
Q Consensus 253 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~--dEs~~~~~d----~~~~i~~~a~d~v 313 (416)
.+.+.. ||--+.+ .+++.++++.+ ..++||.. |....+..+ +.++++.|+ +.+
T Consensus 153 ~~~GaD--~Ik~~~~-~~~~~~~~i~~----~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga-~gv 211 (235)
T cd00958 153 AELGAD--IVKTKYT-GDAESFKEVVE----GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGA-AGV 211 (235)
T ss_pred HHHCCC--EEEecCC-CCHHHHHHHHh----cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCC-cEE
Confidence 566654 6665643 36788888764 56677765 335567665 666777775 444
No 274
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=61.38 E-value=1.2e+02 Score=28.89 Aligned_cols=97 Identities=14% Similarity=0.170 Sum_probs=69.7
Q ss_pred HHHHHHHHhCCCC-c-eeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchH
Q 014886 246 VEVLEKLYEMGVT-P-VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (416)
Q Consensus 246 ~~~~~~L~~~~l~-~-~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~ 323 (416)
.++++.+++.|.. + ..-|+-.-..+++.+++++. .+.+||-.-.-+.++.++.+....| +|.+.+=....+-.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~----~v~~PvL~KDFIid~~QI~ea~~~G-ADavLLI~~~L~~~ 138 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSS----ELKIPVLRKDFILDEIQIREARAFG-ASAILLIVRILTPS 138 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHH----hcCCCEEeccccCCHHHHHHHHHcC-CCEEEeEHhhCCHH
Confidence 3556666666532 1 23344455567787887764 6789999999999999999988877 59987766655544
Q ss_pred HHHHHHHHHHHcCCcEEEccCCch
Q 014886 324 GALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
....+...|+..|+.+.+-...+.
T Consensus 139 ~l~~l~~~a~~lGle~LVEVh~~~ 162 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLVEVHTED 162 (247)
T ss_pred HHHHHHHHHHHcCCceEEEECCHH
Confidence 677899999999999876443333
No 275
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.20 E-value=1.4e+02 Score=27.66 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=94.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+-..++++..+.++.+.+.|++.+-|-+.. ..-.+.|+.+|+.+|++ .|=+-.-.+.+++... -+.|.+ |
T Consensus 21 ~r~~~~~~a~~i~~al~~~Gi~~iEitl~~--~~~~~~I~~l~~~~p~~--~IGAGTVl~~~~a~~a----~~aGA~--F 90 (212)
T PRK05718 21 IVINKLEDAVPLAKALVAGGLPVLEVTLRT--PAALEAIRLIAKEVPEA--LIGAGTVLNPEQLAQA----IEAGAQ--F 90 (212)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEecCC--ccHHHHHHHHHHHCCCC--EEEEeeccCHHHHHHH----HHcCCC--E
Confidence 335678899999999999999999888653 35677788899888864 4445556667665443 446653 8
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-Cc-hHHHHHHHHHHHHcCCcE
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 339 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k-~G-i~~~l~i~~~A~~~gi~~ 339 (416)
+=-|.-..+ -.+. +. +.++|..-| +.|+.++.++.+.| ++++.+-+.- .| ..-...+... --++++
T Consensus 91 ivsP~~~~~--vi~~-a~----~~~i~~iPG--~~TptEi~~a~~~G-a~~vKlFPa~~~gg~~~lk~l~~p--~p~~~~ 158 (212)
T PRK05718 91 IVSPGLTPP--LLKA-AQ----EGPIPLIPG--VSTPSELMLGMELG-LRTFKFFPAEASGGVKMLKALAGP--FPDVRF 158 (212)
T ss_pred EECCCCCHH--HHHH-HH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEEccchhccCHHHHHHHhcc--CCCCeE
Confidence 888875432 2332 22 468888854 57888899999988 5998887765 34 3222222222 236888
Q ss_pred EEccCC
Q 014886 340 MIGGMV 345 (416)
Q Consensus 340 ~~~~~~ 345 (416)
++.+-+
T Consensus 159 ~ptGGV 164 (212)
T PRK05718 159 CPTGGI 164 (212)
T ss_pred EEeCCC
Confidence 886644
No 276
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=61.17 E-value=2.4e+02 Score=30.41 Aligned_cols=148 Identities=13% Similarity=0.177 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEE--EeCCCCCCHHHHHHHHHHHHhCCCCceeeecCC
Q 014886 190 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI--LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 266 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~--vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~ 266 (416)
+...++.+.+.|...|.+-.. .+.+.-...++.+++.|..+... ...+-.++.+...++++.+.+.+.....|=+-.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~ 172 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMA 172 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 344566677788888777655 23333333455566655444432 223334677888888888888776655666665
Q ss_pred CCCCHHHHHHhHHhhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCCCCc-hH---HHHHHHHHHHHcCCc
Q 014886 267 HRDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVRASGLN 338 (416)
Q Consensus 267 ~~~d~~~~~~l~~~~r~~~~iPIa~dEs~---~~~~d~~~~i~~~a~d~v~~k~~k~G-i~---~~l~i~~~A~~~gi~ 338 (416)
-.-......++.+.+++..++||...=+. .........++.| +|++..-+.-+| .+ ..-.++...+..|..
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaG-a~~vd~ai~GlG~~tGn~~le~vv~~L~~~g~~ 250 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAG-ADGIDTAISSMSGGTSHPPTETMVAALRGTGYD 250 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeccccccccccChhHHHHHHHHHhcCCC
Confidence 54444445555444555667777642111 1122334556666 577666555444 22 223444444444443
No 277
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=61.00 E-value=1.7e+02 Score=28.48 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCh---hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNL---KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~---~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (416)
+++...+.++.+.+.|++.+-+.++... ..+.+.++.+++..+ ..+.+= +..+.++| +.+.+.|+....+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvivK--~v~s~~~a----~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLILK--GILTPEDA----LRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEEEe--ecCCHHHH----HHHHHCCCCEEEE
Confidence 5676777777777889999999988322 123466788887632 233332 12455554 4556666642233
Q ss_pred e-----cC-CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 E-----QP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 E-----eP-~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
. +. .....++.+.++++.+ ...+||.++--+.+..|+.+++..| +|.+++
T Consensus 200 ~~~gG~~~~~g~~~~~~l~~i~~~~--~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~i 255 (299)
T cd02809 200 SNHGGRQLDGAPATIDALPEIVAAV--GGRIEVLLDGGIRRGTDVLKALALG-ADAVLI 255 (299)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 1 11 1122355566654321 1259999999999999999999988 588866
No 278
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=60.51 E-value=1.6e+02 Score=28.22 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCceeeecCCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (416)
.+..+...+.|...+.+-.. .+++.-.+.++.+++.|-.+...++. -..++++...++++.+.+.+....+|=+.+-
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG 173 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 34445556677777666544 23333344455555555444433432 2456777777788887777765556666665
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEe
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
.-..+...++-+.++++.++||..
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEE
Confidence 555555555544444555566654
No 279
>PLN02321 2-isopropylmalate synthase
Probab=59.94 E-value=76 Score=34.46 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=65.4
Q ss_pred eCCCC----CCHHHHHHHHHHHHhCCCCceeee--cC-CCCCCHHHHHHhHHhhhccC----CCeEEeCCCCCCHHHHHH
Q 014886 235 DANEG----YKPQEAVEVLEKLYEMGVTPVLFE--QP-VHRDDWEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKK 303 (416)
Q Consensus 235 DaN~~----w~~~~A~~~~~~L~~~~l~~~~iE--eP-~~~~d~~~~~~l~~~~r~~~----~iPIa~dEs~~~~~d~~~ 303 (416)
|.+|+ ++.++=+++++.|.+.|+. .|| =| .++.|++.++++.+.+.... -+|....=+-.+..++..
T Consensus 96 DGeQ~~g~~~s~eeKl~Ia~~L~~lGVd--~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~ 173 (632)
T PLN02321 96 DGEQSPGATLTSKEKLDIARQLAKLGVD--IIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDA 173 (632)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHH
Confidence 55653 6899999999999999985 999 46 44677877777754211100 013322223346778877
Q ss_pred HHHcC--C----CCEEE----------eCCCCCc-hHHHHHHHHHHHHcCC-cEEEccCC
Q 014886 304 IVKGN--L----ADVIN----------IKLAKVG-VLGALEIIEVVRASGL-NLMIGGMV 345 (416)
Q Consensus 304 ~i~~~--a----~d~v~----------~k~~k~G-i~~~l~i~~~A~~~gi-~~~~~~~~ 345 (416)
.++.. + +.++. ++.++-- +..+.+++.+|+++|. .+..++..
T Consensus 174 A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~ED 233 (632)
T PLN02321 174 AWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPED 233 (632)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEeccc
Confidence 77752 1 22221 1111111 2235678999999998 47777653
No 280
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=59.48 E-value=2.6e+02 Score=30.24 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC--C------ChhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVG--K------NLKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG--~------~~~~d~~~v~avr~~g~~~~L~vDaN~----~w~--~~~A-~~~~ 249 (416)
.+.+++...++.+.+.||..+-+--| . --+.+.++++++|+..|+.+|..=..+ +|. ++++ ..++
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v 103 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFV 103 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHH
Confidence 46788888888888899999887433 1 125789999999999888876433342 454 3444 4467
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCe----EEe-CCCCCCHHHHH----HHHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDDVK----KIVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iP----Ia~-dEs~~~~~d~~----~~i~~~a~d~v~~k~~k~ 320 (416)
+...+.++.+..|-+++.. ++.+....+..+ +.+.- |+. +...++...+. .+.+.| +|.+.++=+-
T Consensus 104 ~~a~~~Gid~~rifd~lnd--~~~~~~ai~~ak-~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~- 178 (593)
T PRK14040 104 ERAVKNGMDVFRVFDAMND--PRNLETALKAVR-KVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-VDSLCIKDMA- 178 (593)
T ss_pred HHHHhcCCCEEEEeeeCCc--HHHHHHHHHHHH-HcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 7777777766667777653 443333222222 23442 332 33445554433 344455 6888887654
Q ss_pred c-hH--HHHHHHH-HHHHcCCcEEEccCCchHHHHHH
Q 014886 321 G-VL--GALEIIE-VVRASGLNLMIGGMVETRLAMGF 353 (416)
Q Consensus 321 G-i~--~~l~i~~-~A~~~gi~~~~~~~~es~ig~~a 353 (416)
| ++ +..++.. +-++.++++-+|+...++++.+.
T Consensus 179 G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An 215 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215 (593)
T ss_pred CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHH
Confidence 5 43 3444443 34456899999987655555433
No 281
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=59.35 E-value=50 Score=33.28 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=55.5
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc---hH----HHHHHHHHHHHcCCcEEEc
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG---VL----GALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G---i~----~~l~i~~~A~~~gi~~~~~ 342 (416)
.|+.+++|++ .++.||..-+ +.+.+|.+++++.| +|++.+ +..| +. ....+.+++++.+++++..
T Consensus 224 ~w~~i~~ir~----~~~~pviiKg-V~~~eda~~a~~~G-~d~I~V--SnhGGrqld~~~~~~~~L~ei~~~~~~~vi~d 295 (361)
T cd04736 224 NWQDLRWLRD----LWPHKLLVKG-IVTAEDAKRCIELG-ADGVIL--SNHGGRQLDDAIAPIEALAEIVAATYKPVLID 295 (361)
T ss_pred CHHHHHHHHH----hCCCCEEEec-CCCHHHHHHHHHCC-cCEEEE--CCCCcCCCcCCccHHHHHHHHHHHhCCeEEEe
Confidence 4666777764 6788998887 68999999999988 688644 2333 11 2334566667778999988
Q ss_pred cCCchHHHHHHHHHHHc
Q 014886 343 GMVETRLAMGFAGHLSA 359 (416)
Q Consensus 343 ~~~es~ig~~a~~hlaa 359 (416)
+-+.++.-..-++.+.|
T Consensus 296 GGIr~g~Dv~KALaLGA 312 (361)
T cd04736 296 SGIRRGSDIVKALALGA 312 (361)
T ss_pred CCCCCHHHHHHHHHcCC
Confidence 87766554444444443
No 282
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=59.00 E-value=2.5e+02 Score=30.30 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~----g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
.+.+..++++.++.+.|...+.+-+-. .++.+.++.+++. |-++.|..|-+-.+.. |+..++.++...+++-
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~--~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~--A~~a~~~v~kiRINPG 113 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQG--VREAENLMNINIGLRSQGYMVPLVADVHFNPKV--ADVAAQYAEKVRINPG 113 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHH--HHHHHHhhCCEEECCC
Confidence 355677899999999999999988753 5677777777663 5678999998866653 5555565554433211
Q ss_pred eeecC-------C-CCCCH--------HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hH
Q 014886 261 LFEQP-------V-HRDDW--------EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 323 (416)
Q Consensus 261 ~iEeP-------~-~~~d~--------~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~ 323 (416)
=|=.+ - ..+++ +.+..+.... +..++||=.|-+..++.+ ++++.-. | +--| +.
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~a-k~~~~~iRIGvN~GSL~~--~i~~~yg-~------tpe~mVe 183 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNIC-KENHTAIRIGVNHGSLSD--RIMSRYG-D------TPEGMVE 183 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHH-HHCCCCEEEecCCcCchH--HHHHHhC-C------ChHHHHH
Confidence 11111 0 11111 1122222222 256899999988777763 3333211 1 2236 44
Q ss_pred HHHHHHHHHHHcCCc
Q 014886 324 GALEIIEVVRASGLN 338 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~ 338 (416)
.+++-+.+|+++|..
T Consensus 184 SAle~~~i~e~~~f~ 198 (611)
T PRK02048 184 SCMEFLRICVEEHFT 198 (611)
T ss_pred HHHHHHHHHHHCCCC
Confidence 577788888887765
No 283
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=58.93 E-value=1.8e+02 Score=28.27 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=70.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEe-------cC-------CChhHHHHHHHHHHHhC--CCcEE--EEeCCCCCCHH
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQ 243 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiK-------vG-------~~~~~d~~~v~avr~~g--~~~~L--~vDaN~~w~~~ 243 (416)
.|..++..+..-++++.+.|--.+-|. +| .++++-+++|++++++- +++.| +.|+-..=..+
T Consensus 87 tGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld 166 (289)
T COG2513 87 TGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLD 166 (289)
T ss_pred CCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHH
Confidence 345567788888888888898877654 23 25678889999999974 45444 35654333489
Q ss_pred HHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 244 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
+|++-++...+.|-...|.|-.-+ .+.++++++ +..+|+-.
T Consensus 167 ~AI~Ra~AY~eAGAD~if~~al~~---~e~i~~f~~----av~~pl~~ 207 (289)
T COG2513 167 DAIERAQAYVEAGADAIFPEALTD---LEEIRAFAE----AVPVPLPA 207 (289)
T ss_pred HHHHHHHHHHHcCCcEEccccCCC---HHHHHHHHH----hcCCCeee
Confidence 999999999998866557666544 566777764 44544433
No 284
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=58.67 E-value=2.4e+02 Score=29.55 Aligned_cols=177 Identities=21% Similarity=0.286 Sum_probs=100.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------hhHHHHHHHHHHHhCCCcEEEE--eC-C-CCC--CHHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFIL--DA-N-EGY--KPQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~g~~~~L~v--Da-N-~~w--~~~~A-~~~~ 249 (416)
.+.++....++.+.+.||..+-+--|.. -+.+.++++.+++..++.++.. =+ | -+| .+++. ..++
T Consensus 22 ~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv 101 (467)
T PRK14041 22 MRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFV 101 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHH
Confidence 4678888888888899999988732211 1356789999998877777653 22 2 244 23443 3456
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCC-----CCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-----CRSLDDV----KKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs-----~~~~~d~----~~~i~~~a~d~v~~k~~k~ 320 (416)
+...+.++...-+=.|+. |.+.+....+..+ +.+.-+...++ .++.+.+ +++.+.| +|.+.++=+-
T Consensus 102 ~~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~- 176 (467)
T PRK14041 102 KKVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA- 176 (467)
T ss_pred HHHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-
Confidence 666677776445555654 4444443322222 34555553332 3343333 3445566 6888777553
Q ss_pred c-hH--HHHHHHHH-HHHcCCcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 321 G-VL--GALEIIEV-VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 321 G-i~--~~l~i~~~-A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
| ++ ++.++... -++.++++.+|+-...+++. +-.++|.-....++|
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~--AN~laAieaGad~vD 226 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLAS--LAYLAAVEAGADMFD 226 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHH--HHHHHHHHhCCCEEE
Confidence 5 33 34444443 34568999998875555544 334444333344444
No 285
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=58.34 E-value=1.7e+02 Score=27.69 Aligned_cols=143 Identities=21% Similarity=0.249 Sum_probs=83.1
Q ss_pred eecCCCHHHHHHHHHHHHHc-CCCEEEEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 181 TIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~~----~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
|.|..+.+|....++-.++. +-+-+|+.|-.|. -+-++.+++.+.. ..++.++- |+-++ .-++++|++
T Consensus 76 TaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-----Y~~dD-~v~arrLee 149 (262)
T COG2022 76 TAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-----YTTDD-PVLARRLEE 149 (262)
T ss_pred ccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-----ccCCC-HHHHHHHHh
Confidence 55667777765555444443 4667888874321 1334555555443 23444432 22122 245777888
Q ss_pred CCCCc-eeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHH
Q 014886 255 MGVTP-VLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEII 329 (416)
Q Consensus 255 ~~l~~-~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~ 329 (416)
.|... .=+=-|+-. .+...++-+. ++..+||..|--+.++.|....++.| +|.|-+... +.++..-.
T Consensus 150 ~GcaavMPl~aPIGSg~G~~n~~~l~iii----e~a~VPviVDAGiG~pSdAa~aMElG-~DaVL~NTA---iA~A~DPv 221 (262)
T COG2022 150 AGCAAVMPLGAPIGSGLGLQNPYNLEIII----EEADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTA---IARAKDPV 221 (262)
T ss_pred cCceEeccccccccCCcCcCCHHHHHHHH----HhCCCCEEEeCCCCChhHHHHHHhcc-cceeehhhH---hhccCChH
Confidence 76421 111223321 2344455554 36699999999999999999999998 688876544 34555556
Q ss_pred HHHHHcCC
Q 014886 330 EVVRASGL 337 (416)
Q Consensus 330 ~~A~~~gi 337 (416)
.||+++..
T Consensus 222 ~MA~Af~~ 229 (262)
T COG2022 222 AMARAFAL 229 (262)
T ss_pred HHHHHHHH
Confidence 66665544
No 286
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=57.94 E-value=60 Score=34.14 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=66.0
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeee--cCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFE--QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iE--eP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
|.+| .|+.++-+++++.|.++|+. +|| =|.. +.|.+..+++.. ...+..|+.= .-....++.+.++.
T Consensus 11 DG~Q~~g~~~s~e~K~~ia~~L~~~GV~--~IEvG~p~~s~~d~e~v~~i~~---~~~~~~i~al-~r~~~~did~a~~a 84 (494)
T TIGR00973 11 DGEQSPGASLTVEEKLQIALALERLGVD--IIEAGFPVSSPGDFEAVQRIAR---TVKNPRVCGL-ARCVEKDIDAAAEA 84 (494)
T ss_pred ccCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHH---hCCCCEEEEE-cCCCHHhHHHHHHh
Confidence 5565 46899999999999999986 999 4543 345666666643 1222333321 22356777777765
Q ss_pred C---CCCEEEeCCC--------CCc------hHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 308 N---LADVINIKLA--------KVG------VLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 308 ~---a~d~v~~k~~--------k~G------i~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
. ..+.+.+-.. +.| +..+.+++.+|+++|..+..++...+
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~ 141 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAG 141 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 2 1343433211 111 23356789999999999998887543
No 287
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=57.34 E-value=1.7e+02 Score=27.70 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHH-HHHHHh---CCCcEEEEeC------CCCCCHHHHHHHHH-HHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAV---HPDSSFILDA------NEGYKPQEAVEVLE-KLY 253 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v-~avr~~---g~~~~L~vDa------N~~w~~~~A~~~~~-~L~ 253 (416)
.+.++..+..+.+.+.|++.|-.--........+.+ +++++. .+++.|.-=. ...++.+...+-++ .|+
T Consensus 14 ~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 14 VSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLE 93 (283)
T ss_dssp STHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356777888888999999998765421111122222 245551 2344444322 23345554433222 234
Q ss_pred hCC---CCceeeecCCCCCC-H-HHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEeCCCCCchHHHH
Q 014886 254 EMG---VTPVLFEQPVHRDD-W-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGAL 326 (416)
Q Consensus 254 ~~~---l~~~~iEeP~~~~d-~-~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--~a~d~v~~k~~k~Gi~~~l 326 (416)
.++ +.++++-.|-.... . +.++.+.+ ++ +.+.-=..|=|-++...+..+... ..++++|+..+-+--..-.
T Consensus 94 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~-l~-~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~ 171 (283)
T PF00248_consen 94 RLGTDYIDLLLLHWPDPSEDALEEVWEALEE-LK-KEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEE 171 (283)
T ss_dssp HHTSSSEEEEEESSSSTTSSHHHHHHHHHHH-HH-HTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGH
T ss_pred cccccchhccccccccccccccchhhhhhhh-cc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 332 23357777766554 2 22333332 11 346666667677888888877333 3467777766554111235
Q ss_pred HHHHHHHHcCCcEEEccCCchH
Q 014886 327 EIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 327 ~i~~~A~~~gi~~~~~~~~es~ 348 (416)
.+..+|+++|+.++..+.+..+
T Consensus 172 ~l~~~~~~~gi~v~a~~~l~~G 193 (283)
T PF00248_consen 172 GLLEFCREHGIGVIAYSPLAGG 193 (283)
T ss_dssp HHHHHHHHTT-EEEEESTTGGG
T ss_pred cccccccccccccccccccccC
Confidence 6788999999999988877654
No 288
>PLN02591 tryptophan synthase
Probab=57.12 E-value=1.8e+02 Score=27.67 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (416)
..++..++.+.++++++...++=-|..+
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~ 143 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTP 143 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 4577778888888887765566666554
No 289
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=56.73 E-value=2.1e+02 Score=28.38 Aligned_cols=137 Identities=15% Similarity=0.281 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH--PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g--~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
++++.....++....|. .+-+-+|.. .++.+++.++.+++ .| -|.+|+-.+.+. .+.++
T Consensus 70 ~~e~~~~~~r~~~~~~l-~v~~~vg~~-~~~~~~~~~Lv~ag~~~d-~i~iD~a~gh~~-~~~e~--------------- 130 (326)
T PRK05458 70 DPEARIPFIKDMHEQGL-IASISVGVK-DDEYDFVDQLAAEGLTPE-YITIDIAHGHSD-SVINM--------------- 130 (326)
T ss_pred CHHHHHHHHHhcccccc-EEEEEecCC-HHHHHHHHHHHhcCCCCC-EEEEECCCCchH-HHHHH---------------
Confidence 55555444444333344 333334432 35677777777763 34 466777664322 11222
Q ss_pred cCCCCCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC-------C--CCc--hH--HHHHHH
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKL-------A--KVG--VL--GALEII 329 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~-------~--k~G--i~--~~l~i~ 329 (416)
+++++ +.. ++||..+|- .|.++..++++.| +|++.+-. + +.| .. ..-.+.
T Consensus 131 ----------I~~ir----~~~p~~~vi~g~V-~t~e~a~~l~~aG-ad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~ 194 (326)
T PRK05458 131 ----------IQHIK----KHLPETFVIAGNV-GTPEAVRELENAG-ADATKVGIGPGKVCITKIKTGFGTGGWQLAALR 194 (326)
T ss_pred ----------HHHHH----hhCCCCeEEEEec-CCHHHHHHHHHcC-cCEEEECCCCCcccccccccCCCCCccHHHHHH
Confidence 33333 233 388888865 4899999999988 68864220 0 011 11 222466
Q ss_pred HHHHHcCCcEEEccCCchHHHHHHHHHH
Q 014886 330 EVVRASGLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 330 ~~A~~~gi~~~~~~~~es~ig~~a~~hl 357 (416)
+++++..++++..+-+.++.-..-++.+
T Consensus 195 ~~~~~~~ipVIAdGGI~~~~Di~KaLa~ 222 (326)
T PRK05458 195 WCAKAARKPIIADGGIRTHGDIAKSIRF 222 (326)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHHh
Confidence 6677778998887766665444443333
No 290
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=56.31 E-value=99 Score=30.96 Aligned_cols=58 Identities=19% Similarity=0.332 Sum_probs=43.5
Q ss_pred ccCCCeEEeC-CCCCC--HHHHHHHHHcC----------CCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRS--LDDVKKIVKGN----------LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~--~~d~~~~i~~~----------a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++||++. ....+ .+.+.++++.| .++-|.+|.+..- +..++++.++|+++|+.+-
T Consensus 89 ~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 89 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred HHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3668999965 33445 55666677665 2788999998875 4568899999999999873
No 291
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=55.43 E-value=1.5e+02 Score=26.42 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCC------
Q 014886 193 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV------ 266 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~------ 266 (416)
.++.+.+.|...+-+......+...+.++.+++. ++.+.++.-+..|+.++.+... .+....-+ .|.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~----~~~d~v~~-~~~~~~~~~ 141 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLK----LGVDIVIL-HRGIDAQAA 141 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHH----CCCCEEEE-cCccccccc
Confidence 3466778899988888654333334456666663 5899999888889988776322 22221111 232
Q ss_pred -CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 267 -HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 267 -~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.....+.++++++ ..++||..+=-+ +.+.+.++++.| +|++.+
T Consensus 142 ~~~~~~~~i~~~~~----~~~~~i~~~GGI-~~~~i~~~~~~G-ad~vvv 185 (202)
T cd04726 142 GGWWPEDDLKKVKK----LLGVKVAVAGGI-TPDTLPEFKKAG-ADIVIV 185 (202)
T ss_pred CCCCCHHHHHHHHh----hcCCCEEEECCc-CHHHHHHHHhcC-CCEEEE
Confidence 1233455555542 257888877666 477888888877 466654
No 292
>PRK07094 biotin synthase; Provisional
Probab=55.38 E-value=1.9e+02 Score=28.20 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHcCCcEEEccC
Q 014886 322 VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
..+.++.+..++++|+.+..+.+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~i 186 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGFM 186 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceEE
Confidence 45677778888888887654433
No 293
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=55.25 E-value=2.8e+02 Score=29.30 Aligned_cols=147 Identities=11% Similarity=0.170 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCc--EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCC
Q 014886 190 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 266 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~--~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~ 266 (416)
+...++...+.|...|.|-.. .|++.-...++++++++... .|..-.....|++...++++.+.+.|.....|-+-.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDta 178 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMA 178 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 455677778899999888766 34433333477777776433 332222456789999999999999988766788877
Q ss_pred CCCCHHHHHHhHHhhhccC--CCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCCCCc-hH---HHHHHHHHHHHcCC
Q 014886 267 HRDDWEGLGHVSHIAKDKF--GVSVAADESC---RSLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVRASGL 337 (416)
Q Consensus 267 ~~~d~~~~~~l~~~~r~~~--~iPIa~dEs~---~~~~d~~~~i~~~a~d~v~~k~~k~G-i~---~~l~i~~~A~~~gi 337 (416)
-.-......++-..++++. ++||...=+. .........++.| +|++..-++-+| .+ .+-.++...+..|.
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG-ad~vDtai~Glg~~aGn~atE~vv~~L~~~g~ 257 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESLVEMLEGTGY 257 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC-CCEEEeecccccccccchhHHHHHHHHHhcCC
Confidence 6666666666655556666 5888753221 1223345566777 687655444443 22 12344555554444
No 294
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=54.95 E-value=66 Score=31.22 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=47.3
Q ss_pred ccCCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~dE-s~~~~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++|+++.- ...+.+++.+.++.| +.-+.+|.+..- +.-++++.++|++.|+.+-
T Consensus 72 ~~~~vPV~lHlDHg~~~~~~~~ai~~G-FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVE 133 (286)
T COG0191 72 EKYGVPVALHLDHGASFEDCKQAIRAG-FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVE 133 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHhcC-CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 36679999773 445899999999987 789999999876 4458999999999999984
No 295
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=54.94 E-value=2.3e+02 Score=28.38 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCEEEEecC-C-------ChhHHHHHHHHHHHh----CC--CcEEE-E-----------eC---------C
Q 014886 193 LASKYRKQGFTTLKLKVG-K-------NLKEDIEVLRAIRAV----HP--DSSFI-L-----------DA---------N 237 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG-~-------~~~~d~~~v~avr~~----g~--~~~L~-v-----------Da---------N 237 (416)
.+.++++.||+.+-+... . +.++.++..+.+.+. |= +..|- | |. .
T Consensus 90 ~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~ 169 (347)
T PRK09196 90 TCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHD 169 (347)
T ss_pred HHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchh
Confidence 456678899999999876 2 678888887777653 11 11221 0 11 1
Q ss_pred CCC-CHHHHHHHHHHHHh----------CCCCceeee--cCC-CCCCHHHHHHhHHhhhccC-CCeEEeCC
Q 014886 238 EGY-KPQEAVEVLEKLYE----------MGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADE 293 (416)
Q Consensus 238 ~~w-~~~~A~~~~~~L~~----------~~l~~~~iE--eP~-~~~d~~~~~~l~~~~r~~~-~iPIa~dE 293 (416)
..+ ++++|.+|.++..- .|. |-. .|- +.-|++-++++++ .+ ++|+.+.=
T Consensus 170 ~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~---Yk~~~~p~~~~LdfdrL~eI~~----~v~~vPLVLHG 233 (347)
T PRK09196 170 QLLTDPEEAADFVKKTQVDALAIAIGTSHGA---YKFTRKPTGDVLAIDRIKEIHA----RLPNTHLVMHG 233 (347)
T ss_pred hcCCCHHHHHHHHHHhCcCeEhhhhccccCC---CCCCCCCChhhccHHHHHHHHh----cCCCCCEEEeC
Confidence 226 49999999987642 232 333 352 1246777888764 66 69988643
No 296
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=54.92 E-value=1.5e+02 Score=29.61 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHh-C-CC----cEEE----E--------eC---------
Q 014886 192 ELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV-H-PD----SSFI----L--------DA--------- 236 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~-g-~~----~~L~----v--------Da--------- 236 (416)
+.+.++++.||+.+-+.-.. +.++.+++.+.+.+. - -+ ..|- . |.
T Consensus 87 e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~ 166 (347)
T TIGR01521 87 ATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDH 166 (347)
T ss_pred HHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccch
Confidence 34666788999999998773 678888887777652 1 11 1111 0 21
Q ss_pred CCCC-CHHHHHHHHHHHHh----------CCCCceeee--cCC-CCCCHHHHHHhHHhhhccC-CCeEEeCCC
Q 014886 237 NEGY-KPQEAVEVLEKLYE----------MGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADES 294 (416)
Q Consensus 237 N~~w-~~~~A~~~~~~L~~----------~~l~~~~iE--eP~-~~~d~~~~~~l~~~~r~~~-~iPIa~dEs 294 (416)
...+ ++++|.+|.+...- .|+ |-. +|- +.-|++-++++++ .+ ++|+.+.=.
T Consensus 167 ~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~Ld~~rL~eI~~----~v~~vPLVLHGg 232 (347)
T TIGR01521 167 SQLLTDPEEAADFVKKTKVDALAVAIGTSHGA---YKFTRKPTGEVLAIQRIEEIHA----RLPDTHLVMHGS 232 (347)
T ss_pred hhcCCCHHHHHHHHHHHCcCEEehhcccccCC---cCCCCCCChhhcCHHHHHHHHc----cCCCCCEEEeCC
Confidence 1226 49999999986531 232 443 352 1246777777764 66 699886543
No 297
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=54.28 E-value=1.7e+02 Score=28.02 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCceeeec--CC-CCCCHHHHHHhHHhhhccC-CCeEEe-------CCCCCCHHHHHHHH
Q 014886 237 NEGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKF-GVSVAA-------DESCRSLDDVKKIV 305 (416)
Q Consensus 237 N~~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~r~~~-~iPIa~-------dEs~~~~~d~~~~i 305 (416)
+..++.++-+++++.|.+.|+. .||= |. .+.+.+.++++++ ... +..+.. |=...+..++..++
T Consensus 14 ~~~~s~e~k~~i~~~L~~~Gv~--~IE~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~ 88 (273)
T cd07941 14 GISFSVEDKLRIARKLDELGVD--YIEGGWPGSNPKDTEFFARAKK---LKLKHAKLAAFGSTRRAGVKAEEDPNLQALL 88 (273)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCcCCHHHHHHHHHHHH---cCCCCcEEEEEecccccCCCccchHHHHHHH
Q ss_pred HcCCCCEEEeCCCCC-------------c-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 306 KGNLADVINIKLAKV-------------G-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 306 ~~~a~d~v~~k~~k~-------------G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+.| ++.+.+-.+.. - +....+++.+|+++|+.+..+++
T Consensus 89 ~~g-~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 140 (273)
T cd07941 89 EAG-TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE 140 (273)
T ss_pred hCC-CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE
No 298
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=53.16 E-value=74 Score=31.66 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=47.0
Q ss_pred ccCCCeEEeC-CCCC--CHHHHHHHHHcCC----------CCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCR--SLDDVKKIVKGNL----------ADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~--~~~d~~~~i~~~a----------~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++||++. ..+. +++.+.++++.|. ++-+.+|.+..- +..++++.++|++.|+.+-
T Consensus 82 ~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 82 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred HHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4668999965 3444 7889999999984 899999999875 4558899999999999873
No 299
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.06 E-value=1.8e+02 Score=27.94 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=37.0
Q ss_pred HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHH
Q 014886 252 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 252 L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
++++|+. ++=+|+.+.+.+.+.++. .-+-|...+. .+. ++.+.+. +.---+.+|-+..| +.+++..++
T Consensus 87 ~~~~Gl~--~~te~~d~~~~~~l~~~v------d~~kIga~~~-~n~-~LL~~~a-~~gkPV~lk~G~~~s~~e~~~A~e 155 (266)
T PRK13398 87 GDKYNLP--VVTEVMDTRDVEEVADYA------DMLQIGSRNM-QNF-ELLKEVG-KTKKPILLKRGMSATLEEWLYAAE 155 (266)
T ss_pred HHHcCCC--EEEeeCChhhHHHHHHhC------CEEEECcccc-cCH-HHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHH
Confidence 3456653 666776666555444432 1233434333 222 2333332 11234556666555 666666666
Q ss_pred HHHHcCC
Q 014886 331 VVRASGL 337 (416)
Q Consensus 331 ~A~~~gi 337 (416)
..+..|-
T Consensus 156 ~i~~~Gn 162 (266)
T PRK13398 156 YIMSEGN 162 (266)
T ss_pred HHHhcCC
Confidence 6666555
No 300
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=52.63 E-value=2.5e+02 Score=27.99 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCceeee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFE 263 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iE 263 (416)
.+.+...+++.++.+.|...+.+-+-. .++.+.+..+++. -.+.|..|-+--|. .|+.-++. ++...++
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~--~~~A~al~~I~~~-~~iPlVADIHFd~~--lAl~a~~~g~dkiRIN----- 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPD--RESAAAFEAIKEG-TNVPLVADIHFDYR--LAALAMAKGVAKVRIN----- 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHhC-CCCCEEEeeCCCcH--HHHHHHHhccCeEEEC-----
Confidence 355677889999999999999888743 5778888888884 34889999875543 33333332 4444443
Q ss_pred cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCc
Q 014886 264 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (416)
Q Consensus 264 eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~ 338 (416)
|=.-.+.+..+.+.+..+ ..++||=.|-+..+++. ++++... +++.-+ +..+++-+.+++++|..
T Consensus 101 -PGNig~~e~v~~vv~~ak-~~~ipIRIGVN~GSL~~--~~~~kyg------~~t~eamveSAl~~v~~le~~~F~ 166 (346)
T TIGR00612 101 -PGNIGFRERVRDVVEKAR-DHGKAMRIGVNHGSLER--RLLEKYG------DATAEAMVQSALEEAAILEKLGFR 166 (346)
T ss_pred -CCCCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCcH--HHHHHcC------CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 444444455555544333 56899999988888763 4444321 123335 44678888999988876
No 301
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=52.57 E-value=2.6e+02 Score=28.10 Aligned_cols=133 Identities=16% Similarity=0.260 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCceeeec
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 264 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEe 264 (416)
+.+...+++.++.+.|...+.+-+-. .++.+.+..+++..+ +.|..|-+ |+..-|+.-++. .+...++
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~~--~~~a~al~~I~~~~~-iPlvADIH--Fd~~lAl~a~~~G~~~iRIN------ 108 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVPD--MEAAAALPEIKKQLP-VPLVADIH--FDYRLALAAAEAGADALRIN------ 108 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccCC--HHHHHhHHHHHHcCC-CCEEEecC--CCHHHHHHHHHhCCCEEEEC------
Confidence 45667889999999999999888753 678888888888753 88999986 455555555554 3333333
Q ss_pred CCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHcCCc
Q 014886 265 PVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 338 (416)
Q Consensus 265 P~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~gi~ 338 (416)
|=.-.. .+..+++.+.. +..++||=.|-+..+++ +++++. ++ +++--+ +..+++-+.+++.+|..
T Consensus 109 PGNig~~~~~v~~vv~~a-k~~~ipIRIGvN~GSL~--~~~~~~--yg----~~t~eamveSAl~~~~~le~~~f~ 175 (360)
T PRK00366 109 PGNIGKRDERVREVVEAA-KDYGIPIRIGVNAGSLE--KDLLEK--YG----EPTPEALVESALRHAKILEELGFD 175 (360)
T ss_pred CCCCCchHHHHHHHHHHH-HHCCCCEEEecCCccCh--HHHHHH--cC----CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 333233 33455554433 35689999998888876 334432 11 122236 45678889999998876
No 302
>PLN02535 glycolate oxidase
Probab=52.35 E-value=2.6e+02 Score=28.17 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=53.0
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC--C-C--chHHHHHHHHHHHHc--CCcEEE
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA--K-V--GVLGALEIIEVVRAS--GLNLMI 341 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~--k-~--Gi~~~l~i~~~A~~~--gi~~~~ 341 (416)
-+|+.+++|+. .++.||..-+- .+.++.+.+++.| +|++.+--. + . |+.....+.++.++. .++++.
T Consensus 210 ~tW~~i~~lr~----~~~~PvivKgV-~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~ 283 (364)
T PLN02535 210 LSWKDIEWLRS----ITNLPILIKGV-LTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL 283 (364)
T ss_pred CCHHHHHHHHh----ccCCCEEEecC-CCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe
Confidence 35777787764 67899999987 6788999999987 688765321 1 1 222223334444443 588888
Q ss_pred ccCCchHHHHHHHHHH
Q 014886 342 GGMVETRLAMGFAGHL 357 (416)
Q Consensus 342 ~~~~es~ig~~a~~hl 357 (416)
.+-+.++.-..-++.+
T Consensus 284 dGGIr~g~Dv~KALal 299 (364)
T PLN02535 284 DGGVRRGTDVFKALAL 299 (364)
T ss_pred eCCCCCHHHHHHHHHc
Confidence 7777666554444444
No 303
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=52.19 E-value=2.2e+02 Score=27.20 Aligned_cols=148 Identities=17% Similarity=0.161 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCC-Cce
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV---HPDSSFILDANEGYKPQEAVEVLEKLYEMGV-TPV 260 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~---g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l-~~~ 260 (416)
.+.+.+.+.+++.+++|-..+-|-.+...+++.+++..+-+. .-++.|.||....=..+.|++..+ ..++ +..
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~---G~~iINsI 98 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAK---GPPLINSV 98 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCC---CCCEEEeC
Confidence 466778889999999999999988875555556654433332 136889999866555555544422 2111 101
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEE---eCCC-CC-CH----HHHHH----HHHcCCC-CEEEeCCCCC--c---
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVA---ADES-CR-SL----DDVKK----IVKGNLA-DVINIKLAKV--G--- 321 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa---~dEs-~~-~~----~d~~~----~i~~~a~-d~v~~k~~k~--G--- 321 (416)
+-|+ +..+.+..+.+ +.+.|+. .++. .. +. ..+.+ +.+.|-- +=+.+|+.-. |
T Consensus 99 s~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~ 170 (261)
T PRK07535 99 SAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQ 170 (261)
T ss_pred CCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCCh
Confidence 3332 11233444432 4566766 2221 11 12 22222 3334421 2355787543 2
Q ss_pred --hHHHHHHHHHHHHc--CCcEEEcc
Q 014886 322 --VLGALEIIEVVRAS--GLNLMIGG 343 (416)
Q Consensus 322 --i~~~l~i~~~A~~~--gi~~~~~~ 343 (416)
..+.++.....++. |.++.+|-
T Consensus 171 ~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 171 DAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666666665 89988764
No 304
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=52.18 E-value=1.2e+02 Score=30.40 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=77.5
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCC---------ceeeecCCCCCCHH----------------HHHHhHHhh--hc
Q 014886 231 SFILDANEGYKPQEAVEVLEKLYEMGVT---------PVLFEQPVHRDDWE----------------GLGHVSHIA--KD 283 (416)
Q Consensus 231 ~L~vDaN~~w~~~~A~~~~~~L~~~~l~---------~~~iEeP~~~~d~~----------------~~~~l~~~~--r~ 283 (416)
-+++=...--+.++|++++++|.+.+-. -.|+|-|-....|. |++.+++.+ ..
T Consensus 56 lvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~ 135 (353)
T PRK12755 56 LVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLV 135 (353)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 3444455556899999999999775311 13788886543333 344333211 23
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G--i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
.+++|++..=. . +.....+.+ .+|+.++ | -++.....++|...++++.+-..+++.+..+..+-.|+..
T Consensus 136 e~Glp~atE~l-d-~~~~~y~~D--lvs~~aI-----GARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa~~ 206 (353)
T PRK12755 136 ELGLPLATEAL-D-PISPQYLGD--LISWGAI-----GARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAAAQ 206 (353)
T ss_pred HhCCCEEEEec-C-cccHHHHHh--hhhheee-----ccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHHhC
Confidence 67999987422 2 222222221 2455444 6 4577778899999999999988888888887777777766
Q ss_pred CC
Q 014886 362 GC 363 (416)
Q Consensus 362 ~~ 363 (416)
|.
T Consensus 207 ~H 208 (353)
T PRK12755 207 PH 208 (353)
T ss_pred CC
Confidence 54
No 305
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=52.15 E-value=2.2e+02 Score=28.70 Aligned_cols=110 Identities=17% Similarity=0.225 Sum_probs=70.6
Q ss_pred CCCEEEEecC-CChhHHHHHHHHHHHh--CCCcE----E--------EEeC-----CCCC-CHHHHHHHHHHH------H
Q 014886 201 GFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSS----F--------ILDA-----NEGY-KPQEAVEVLEKL------Y 253 (416)
Q Consensus 201 G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~----L--------~vDa-----N~~w-~~~~A~~~~~~L------~ 253 (416)
||+.+-+.-. .+.++.++..+.+.+. .-++. | -++. +..| ++++|.+|.++. +
T Consensus 135 gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD 214 (357)
T TIGR01520 135 LFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNF 214 (357)
T ss_pred CCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcc
Confidence 3999999977 5788888888877652 11111 0 1111 1236 599999999866 2
Q ss_pred h--------CCCCceee-ecCCCCCCHHHHHHhHHhhhccCCCe-------EEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 254 E--------MGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVS-------VAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 254 ~--------~~l~~~~i-EeP~~~~d~~~~~~l~~~~r~~~~iP-------Ia~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
- .|+ |- +.| .-|++-++++++..++.+++| +..|=|-...++++++++.|. .=+|++
T Consensus 215 ~LAvAiGT~HG~---Yk~~~p--~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI-~KINi~ 287 (357)
T TIGR01520 215 SIAAAFGNVHGV---YKPGNV--KLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGV-VKMNID 287 (357)
T ss_pred eeeeeeccccCC---cCCCCC--ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCC-eEEEeC
Confidence 1 232 42 444 457888888854333467888 557778888899999999884 334554
No 306
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=51.99 E-value=1.8e+02 Score=28.99 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=75.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhCCCC---------ceeeecCCCC----------------CCHHHHHHhHHhhh--cc
Q 014886 232 FILDANEGYKPQEAVEVLEKLYEMGVT---------PVLFEQPVHR----------------DDWEGLGHVSHIAK--DK 284 (416)
Q Consensus 232 L~vDaN~~w~~~~A~~~~~~L~~~~l~---------~~~iEeP~~~----------------~d~~~~~~l~~~~r--~~ 284 (416)
+.+=...--+.++|++++++|.+..-. -.|+|-|-.. +-.+|++..++.+. ..
T Consensus 55 vIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~GL~~~R~ll~~i~~ 134 (348)
T PRK12756 55 VIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQINE 134 (348)
T ss_pred EEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 334555566899999999888765311 1388999421 11234444333221 26
Q ss_pred CCCeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCCCc--hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 285 FGVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 285 ~~iPIa~dEs~~-~~~d~~~~i~~~a~d~v~~k~~k~G--i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
+++|++..=.-. +++-+.+++.-+ .+| -++..-..++|...++++-+-..+...+..+..+-.|++.
T Consensus 135 ~GlP~atE~ld~~~~qY~~DliSwg----------aIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~~ 204 (348)
T PRK12756 135 LGLPTATEFLDMVTGQYIADLISWG----------AIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAARA 204 (348)
T ss_pred cCCceeehhcccccHHHHHHHHhhh----------hhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHHhC
Confidence 789998742211 122223333211 135 3466667899999999999988888899998888888877
Q ss_pred CC
Q 014886 362 GC 363 (416)
Q Consensus 362 ~~ 363 (416)
|.
T Consensus 205 ~H 206 (348)
T PRK12756 205 SH 206 (348)
T ss_pred CC
Confidence 65
No 307
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=51.57 E-value=2.3e+02 Score=27.18 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=77.0
Q ss_pred EeecCCCHHHHHHHHHHHHHc-------CCCEEEEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHH
Q 014886 180 ITIPIVSPAEAAELASKYRKQ-------GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 247 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~-------G~~~~KiKvG~~~----~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~ 247 (416)
.|.+..+.+|.+..++-.++. |-+-+|+.|=+|. -+.++.+++-+.. -.++.++- |..++ .-
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v 149 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLP-----YINAD-PM 149 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEee-----cCCCC-HH
Confidence 355667777765555444443 4678999885322 2445666666654 24444442 22122 34
Q ss_pred HHHHHHhCCCCc-eeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 248 VLEKLYEMGVTP-VLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 248 ~~~~L~~~~l~~-~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
++++|++.|... .=+=-|+-. .+...++.+. ++.++||..|=-+.+..|+...++.| +|.+-+.
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~----e~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~n 218 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII----ENAKIPVIIDAGIGTPSEASQAMELG-ASGVLLN 218 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH----HcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 678888877531 112234332 2455556555 36789999999999999999999999 5877654
No 308
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=51.51 E-value=1.5e+02 Score=29.85 Aligned_cols=130 Identities=15% Similarity=0.260 Sum_probs=80.9
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+.+.+.++..+ +..+.++.+++.|...+=|.+. ..-+.-++.++.+|+.+|++.++. ..--|.+.|..+++.=.+
T Consensus 97 l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~via--GNV~T~e~a~~L~~aGad 172 (352)
T PF00478_consen 97 LLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIA--GNVVTYEGAKDLIDAGAD 172 (352)
T ss_dssp BCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEE--EEE-SHHHHHHHHHTT-S
T ss_pred ceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEe--cccCCHHHHHHHHHcCCC
Confidence 34445555432 2356677788889999988876 345677788999999999888873 234567777665443211
Q ss_pred ---CCCCceeeecCCC-----------CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 255 ---MGVTPVLFEQPVH-----------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 255 ---~~l~~~~iEeP~~-----------~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
.++- |-+ ..++....+.++ .+++.++||.+|=-+.+..|+.+++..|+ |.+.+--
T Consensus 173 ~vkVGiG------pGsiCtTr~v~GvG~PQ~tAv~~~a~-~a~~~~v~iIADGGi~~sGDi~KAla~GA-d~VMlG~ 241 (352)
T PF00478_consen 173 AVKVGIG------PGSICTTREVTGVGVPQLTAVYECAE-AARDYGVPIIADGGIRTSGDIVKALAAGA-DAVMLGS 241 (352)
T ss_dssp EEEESSS------SSTTBHHHHHHSBSCTHHHHHHHHHH-HHHCTTSEEEEESS-SSHHHHHHHHHTT--SEEEEST
T ss_pred EEEEecc------CCcccccccccccCCcHHHHHHHHHH-HhhhccCceeecCCcCcccceeeeeeecc-cceeech
Confidence 1111 211 113333444433 23467999999999999999999999984 8887743
No 309
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=51.26 E-value=2.4e+02 Score=27.40 Aligned_cols=153 Identities=18% Similarity=0.162 Sum_probs=92.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
+.+.+.+.++.+.+.|.+.+=+--. -..++=.+.++.+++. .+++.+++=.. . +.++++++++..++.|..
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 5567888889999999988765432 1334555567777775 56788887664 4 889999999999998875
Q ss_pred ceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCC---CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHH
Q 014886 259 PVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADES---CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 333 (416)
Q Consensus 259 ~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs---~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~ 333 (416)
-..+=-|.-. ...+++...-+.+.+.+++||..=.. -.+++.+.++.+. .-.++-+|-+ +| +....++.....
T Consensus 104 av~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~-~pni~giK~s-~~d~~~~~~~~~~~~ 181 (303)
T PRK03620 104 GILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAER-CPNLVGFKDG-VGDIELMQRIVRALG 181 (303)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEeC-CCCHHHHHHHHHHcC
Confidence 3344444321 12222222111122367899875432 2356667777633 2478888876 46 655555543222
Q ss_pred HcCCcEEEcc
Q 014886 334 ASGLNLMIGG 343 (416)
Q Consensus 334 ~~gi~~~~~~ 343 (416)
-+..+..|.
T Consensus 182 -~~f~vl~G~ 190 (303)
T PRK03620 182 -DRLLYLGGL 190 (303)
T ss_pred -CCeEEEeCC
Confidence 255555553
No 310
>PRK06256 biotin synthase; Validated
Probab=51.16 E-value=1.9e+02 Score=28.47 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
....++.+..++++|+++..+.++
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeEE
Confidence 456777788888888887655443
No 311
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=51.08 E-value=2.4e+02 Score=27.30 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=74.6
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcEEE--EeC-----------CCCC-CHHHHHHHHHHHH-
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFI--LDA-----------NEGY-KPQEAVEVLEKLY- 253 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~L~--vDa-----------N~~w-~~~~A~~~~~~L~- 253 (416)
+.+++.++.||+.+-+.-. .+.++.+++.+.+++. --++.+- +.. ...+ ++++|.++.++..
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgv 167 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGV 167 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCc
Confidence 4556677889999998876 4566778877777753 1122221 111 1224 6999988887442
Q ss_pred hC-CC--Cc-e-eeecCCCCCCHHHHHHhHHhhhccCCCeEE-eCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 254 EM-GV--TP-V-LFEQPVHRDDWEGLGHVSHIAKDKFGVSVA-ADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 254 ~~-~l--~~-~-~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa-~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
++ .+ .. . .+.. .+.-+++.++++++ .+++|+. .|=|-.+.++++++++.| ++-+|+...
T Consensus 168 D~Lavs~Gt~hg~~~~-~~~l~~e~L~~i~~----~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~ 232 (282)
T TIGR01859 168 DYLAAAIGTSHGKYKG-EPGLDFERLKEIKE----LTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTD 232 (282)
T ss_pred CEEeeccCccccccCC-CCccCHHHHHHHHH----HhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcH
Confidence 11 10 00 0 1111 13446788888765 6689987 455667788999999988 677777543
No 312
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=50.88 E-value=2.2e+02 Score=26.90 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=72.7
Q ss_pred EeecCCCHHHHHHHHHHHHHc-CCCEEEEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 180 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~~----~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
.|.+..+.+|.+..++-.++. |-.-+|+.|-.|. -+-++.+++-+.. -.++.++- |..++ .-++++|+
T Consensus 68 NTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v~akrL~ 141 (247)
T PF05690_consen 68 NTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-----YCTDD-PVLAKRLE 141 (247)
T ss_dssp E-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-----EE-S--HHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-----cCCCC-HHHHHHHH
Confidence 456677888876666666664 6788999985332 2345566666554 23444431 11122 35788899
Q ss_pred hCCCCc-eeeecCCCC----CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 254 EMGVTP-VLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 254 ~~~l~~-~~iEeP~~~----~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
+.|... .=+=-|+-. .+...++.+.+ +.++||..|--+.++.|....++.| +|.+-+.-
T Consensus 142 d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvNT 205 (247)
T PF05690_consen 142 DAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLVNT 205 (247)
T ss_dssp HTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGSSSBEEES---SHHHHHHHHHTT--SEEEESH
T ss_pred HCCCCEEEecccccccCcCCCCHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHcC-Cceeehhh
Confidence 887531 123345432 34555666653 6799999999999999999999999 58887763
No 313
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=50.78 E-value=1.5e+02 Score=27.36 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHc-CCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce--
Q 014886 184 IVSPAEAAELASKYRKQ-GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-- 260 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~-- 260 (416)
..+.+++.++++.+.+. |...+||-+.. .-++.++.+++.+ +.+=+-.-|+.+||...++.-.+| +.++
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~g----i~v~~T~V~s~~Qa~~Aa~AGA~y-vsP~vg 131 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEG----IKTNVTAIFSAAQALLAAKAGATY-VSPFVG 131 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcC----CceeeEEecCHHHHHHHHHcCCCE-EEEecC
Confidence 46889999999988776 56666666542 4455555555543 333344568888887776654443 2110
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCe---EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVS---VAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iP---Ia~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+++-- .+-++..+++.+.. ++.+++ +++ |+.++.++.++...| +|++-+
T Consensus 132 R~~~~g-~dg~~~i~~i~~~~-~~~~~~tkil~A--s~r~~~ei~~a~~~G-ad~vTv 184 (211)
T cd00956 132 RIDDLG-GDGMELIREIRTIF-DNYGFDTKILAA--SIRNPQHVIEAALAG-ADAITL 184 (211)
T ss_pred hHhhcC-CCHHHHHHHHHHHH-HHcCCCceEEec--ccCCHHHHHHHHHcC-CCEEEe
Confidence 111110 11122233333222 234555 555 788999999888887 587754
No 314
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=50.61 E-value=1.6e+02 Score=28.63 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcEE------------EEeC----CCCC-CHHHHHHHHH
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSF------------ILDA----NEGY-KPQEAVEVLE 250 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~L------------~vDa----N~~w-~~~~A~~~~~ 250 (416)
.+.+.++++.||+.+-+... .+.++.++..+.+.+. --++.+ .++. ...+ ++++|.+|.+
T Consensus 86 ~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~ 165 (287)
T PF01116_consen 86 FEDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVE 165 (287)
T ss_dssp HHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHH
Confidence 34556677789999999987 5677888876666542 111111 1122 2345 4999999988
Q ss_pred HHHh----------CCCCceeee--cCCCCCCHHHHHHhHHhhhccC-CCeEEeC-CCCCCHHHHHHHHHcC
Q 014886 251 KLYE----------MGVTPVLFE--QPVHRDDWEGLGHVSHIAKDKF-GVSVAAD-ESCRSLDDVKKIVKGN 308 (416)
Q Consensus 251 ~L~~----------~~l~~~~iE--eP~~~~d~~~~~~l~~~~r~~~-~iPIa~d-Es~~~~~d~~~~i~~~ 308 (416)
+..- .|. |=. .| .-|++-++++++ .+ ++|+.+. =|-...++++++++.|
T Consensus 166 ~TgvD~LAvaiGt~HG~---y~~~~~p--~Ld~~~L~~I~~----~~~~iPLVlHGgSG~~~e~~~~ai~~G 228 (287)
T PF01116_consen 166 ETGVDALAVAIGTAHGM---YKGGKKP--KLDFDRLKEIRE----AVPDIPLVLHGGSGLPDEQIRKAIKNG 228 (287)
T ss_dssp HHTTSEEEE-SSSBSSS---BSSSSST--C--HHHHHHHHH----HHHTSEEEESSCTTS-HHHHHHHHHTT
T ss_pred HhCCCEEEEecCccccc---cCCCCCc--ccCHHHHHHHHH----hcCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 7642 221 333 33 357888888875 67 8999964 5556667899999887
No 315
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=50.42 E-value=2e+02 Score=30.56 Aligned_cols=104 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeec--CC-CCCCHHHHHHhHHhhhcc-CCCeEEe-------CCCCCCHH
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDK-FGVSVAA-------DESCRSLD 299 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~r~~-~~iPIa~-------dEs~~~~~ 299 (416)
|.+| .++.++-+++++.|.+.|+. .||= |. .+.|.+..+++.+ .. .+..++. |-...+..
T Consensus 15 DG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd--~IEvG~p~as~~d~~~~~~i~~---~~l~~~~i~~~~~~~~~~i~~~~d~ 89 (524)
T PRK12344 15 DGAQGEGISFSVEDKLRIARKLDELGVD--YIEGGWPGSNPKDTEFFKRAKE---LKLKHAKLAAFGSTRRAGVSAEEDP 89 (524)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcCChhHHHHHHHHHH---hCCCCcEEEEEeeccccCCCcccHH
Q ss_pred HHHHHHHcCCCCEEEe----------CCCCCc----hHHHHHHHHHHHHcCCcEEEccC
Q 014886 300 DVKKIVKGNLADVINI----------KLAKVG----VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 300 d~~~~i~~~a~d~v~~----------k~~k~G----i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
++..+.+.+ .+.+.+ +.-+.. +....+.+.+|+++|..+.++++
T Consensus 90 ~~e~~~~~g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e 147 (524)
T PRK12344 90 NLQALLDAG-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE 147 (524)
T ss_pred HHHHHHhCC-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc
No 316
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=50.10 E-value=1.7e+02 Score=29.33 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=40.5
Q ss_pred ccCCCeEEeC-CCCCC-------------HHHHHHHHHcCCCCEEEeCCCCCc----hHHHHHHHHHHHHcCCcEE
Q 014886 283 DKFGVSVAAD-ESCRS-------------LDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 283 ~~~~iPIa~d-Es~~~-------------~~d~~~~i~~~a~d~v~~k~~k~G----i~~~l~i~~~A~~~gi~~~ 340 (416)
++.++||++. ....+ .+.+++.++.| ++-+++|.+..= +..++++.++|+++|+.+-
T Consensus 84 ~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~G-ftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVE 158 (345)
T cd00946 84 EHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPL-FSSHMLDLSEEPLEENIEICKKYLERMAKINMWLE 158 (345)
T ss_pred HHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCC-CceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3668899865 33445 33333344555 788999999874 5568999999999999873
No 317
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=50.01 E-value=2.7e+02 Score=27.92 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=58.6
Q ss_pred HHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHh----CC--CcEEE-E-----------eC---------C
Q 014886 193 LASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV----HP--DSSFI-L-----------DA---------N 237 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~----g~--~~~L~-v-----------Da---------N 237 (416)
.+.++++.||+.+-+.-.. +.++.+++.+.|.+. |= +..|- | |. .
T Consensus 90 ~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~ 169 (347)
T PRK13399 90 TCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHD 169 (347)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccccc
Confidence 4567788999999998762 378888887777653 11 11221 0 21 1
Q ss_pred CCC-CHHHHHHHHHHHHh----------CCCCceeee--cCC-CCCCHHHHHHhHHhhhccC-CCeEEeCCCC
Q 014886 238 EGY-KPQEAVEVLEKLYE----------MGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADESC 295 (416)
Q Consensus 238 ~~w-~~~~A~~~~~~L~~----------~~l~~~~iE--eP~-~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~ 295 (416)
..+ ++++|.+|.+...- .|+ |-. +|- +.-+++-++++++ .+ ++|+.+.=.-
T Consensus 170 ~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~L~~drl~eI~~----~v~~vPLVLHGgS 235 (347)
T PRK13399 170 QMLTDPDQAVDFVQRTGVDALAIAIGTSHGA---YKFTRKPDGDILAIDRIEEIHA----RLPNTHLVMHGSS 235 (347)
T ss_pred ccCCCHHHHHHHHHHHCcCEEhhhhccccCC---cCCCCCCChhhccHHHHHHHHh----hcCCCCEEEeCCC
Confidence 226 49999999987531 232 433 353 1246777777764 56 6999865443
No 318
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=49.87 E-value=2.8e+02 Score=27.77 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcE----E--------EEeC----C-CCC-CHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSS----F--------ILDA----N-EGY-KPQEAVEVLE 250 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~----L--------~vDa----N-~~w-~~~~A~~~~~ 250 (416)
+.++++.+.||+.+-+... .+.++.+++.+.+.+. .-++. | -++. + .-| ++++|.+|.+
T Consensus 114 ~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~ 193 (345)
T cd00946 114 EYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYE 193 (345)
T ss_pred HHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHH
Confidence 3445566789999998877 5778888888877542 11111 1 1111 1 236 5999999999
Q ss_pred HH------Hh--------CCCCceee-ecCCCCCCHHHHHHhHHhhhccC------CCeEE-eCCCCCCHHHHHHHHHcC
Q 014886 251 KL------YE--------MGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKF------GVSVA-ADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 251 ~L------~~--------~~l~~~~i-EeP~~~~d~~~~~~l~~~~r~~~------~iPIa-~dEs~~~~~d~~~~i~~~ 308 (416)
++ +- .|+ |- .+| .-|++-++++++.+++.+ ++|+. .|=|=...++++++++.|
T Consensus 194 ~t~~~tgvD~LAvaiGt~HG~---Y~~~~p--~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~G 268 (345)
T cd00946 194 ALSKISPNFSIAAAFGNVHGV---YKPGNV--KLQPEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYG 268 (345)
T ss_pred HhccCCCceeeeeeccccccC---CCCCCC--ccCHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcC
Confidence 86 21 222 33 344 446777888754323344 57777 456777778999999887
Q ss_pred CCCEEEeC
Q 014886 309 LADVINIK 316 (416)
Q Consensus 309 a~d~v~~k 316 (416)
. .=+|++
T Consensus 269 I-~KiNi~ 275 (345)
T cd00946 269 V-VKMNID 275 (345)
T ss_pred C-eeEEeC
Confidence 4 334443
No 319
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.05 E-value=2.9e+02 Score=27.70 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEecC----CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 191 AELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG----~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
.+.++.+++.|+. +-+-+- .+++.=.+.++++.+.|.+.--..|.++..++.+..++++.+.+
T Consensus 115 ~~~i~~ak~~G~~-v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 115 VEAVEYAKEHGLI-VEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred HHHHHHHHHcCCE-EEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhc
Confidence 3444555666753 222221 23344444555555566666566788888888888787777764
No 320
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=48.87 E-value=71 Score=30.52 Aligned_cols=94 Identities=18% Similarity=0.179 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCCc--eeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchH
Q 014886 246 VEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (416)
Q Consensus 246 ~~~~~~L~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~ 323 (416)
.++++..+..|... ..-|+.+-...++.+..+++ .+++||-.-.-+.++.++.+....| +|.+.+=+.-++-.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~----~~~~PvL~KDFIid~~QI~eA~~~G-ADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRK----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHH----HSSS-EEEES---SHHHHHHHHHTT--SEEEEEGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHH----HhCCCcccccCCCCHHHHHHHHHcC-CCEeehhHHhCCHH
Confidence 34556666654321 24455555555666666653 6899999999999999999988888 59988877666655
Q ss_pred HHHHHHHHHHHcCCcEEEccC
Q 014886 324 GALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~ 344 (416)
....+..+|+..|+.+.+-..
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh 166 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVH 166 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEEC
Confidence 567899999999999876443
No 321
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=48.30 E-value=1e+02 Score=31.95 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=63.1
Q ss_pred HHHHHHHHHH-HHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCC-
Q 014886 242 PQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK- 319 (416)
Q Consensus 242 ~~~A~~~~~~-L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k- 319 (416)
..+|+.++-+ +-+-|- ..++|+|.-..-...++.+ ...-+||-.|+.-.+++.+.+.++.+.+.++-+-++.
T Consensus 164 ~q~al~l~~~~l~~pGd-~v~vE~PtY~~~~~~~~~~-----g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~q 237 (459)
T COG1167 164 AQQALDLLLRLLLDPGD-TVLVEDPTYPGALQALEAL-----GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQ 237 (459)
T ss_pred HHHHHHHHHHHhCCCCC-EEEEcCCCcHHHHHHHHHc-----CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCC
Confidence 4566664443 333332 3699999865322222221 2335788889999999999999987656666555443
Q ss_pred --Cc--hH--HHHHHHHHHHHcCCcEEEccC
Q 014886 320 --VG--VL--GALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 320 --~G--i~--~~l~i~~~A~~~gi~~~~~~~ 344 (416)
.| ++ +-.+++++|+++++.++=-..
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 46 33 457899999999999875443
No 322
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=47.88 E-value=3.9e+02 Score=28.83 Aligned_cols=164 Identities=21% Similarity=0.291 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHhCCCcEEEEe---CC-CCCC--HHHH-HHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILD---AN-EGYK--PQEA-VEVL 249 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~g~~~~L~vD---aN-~~w~--~~~A-~~~~ 249 (416)
.+.++..+.++.+.+.||..+-+--|. --+.+.++++++++..++.++..= .| -+|. +++. ..++
T Consensus 18 ~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v 97 (582)
T TIGR01108 18 MRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFV 97 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHH
Confidence 467888888888889999998875221 114578899999998777766532 23 1332 3443 3467
Q ss_pred HHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCC-----CCCHHHH----HHHHHcCCCCEEEeCCCCC
Q 014886 250 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-----CRSLDDV----KKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 250 ~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs-----~~~~~d~----~~~i~~~a~d~v~~k~~k~ 320 (416)
+...+.++...-+=.++. |.+.+....+..+ +.+.-+....+ .++.+.+ +++.+.| +|.+.++=+-
T Consensus 98 ~~a~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G-ad~I~i~Dt~- 172 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALN--DPRNLQAAIQAAK-KHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG-VDSICIKDMA- 172 (582)
T ss_pred HHHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCCC-
Confidence 777777776445556654 3333333222222 33444443211 2344443 3445566 6888777554
Q ss_pred c-hH--HHHHHHH-HHHHcCCcEEEccCCchHHHHHH
Q 014886 321 G-VL--GALEIIE-VVRASGLNLMIGGMVETRLAMGF 353 (416)
Q Consensus 321 G-i~--~~l~i~~-~A~~~gi~~~~~~~~es~ig~~a 353 (416)
| ++ ...++.. +-+..++++-+|+...++++.+.
T Consensus 173 G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An 209 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMA 209 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHH
Confidence 5 43 3444443 34556889999887666655443
No 323
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=47.54 E-value=1.1e+02 Score=28.00 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=69.1
Q ss_pred CcEEEEeCCCCC-------CHHHHHHHHHHHHhCCCCceee---ecCCC-CCCHHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 229 DSSFILDANEGY-------KPQEAVEVLEKLYEMGVTPVLF---EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 229 ~~~L~vDaN~~w-------~~~~A~~~~~~L~~~~l~~~~i---EeP~~-~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
+..+..+.+.+= +..+..++++..++.|.. || =++.. ...++.++.+++ ..++||...--+.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~--~l~v~~~~~~~~g~~~~~~~i~~----~v~iPi~~~~~i~~ 83 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAA--AISVLTEPKYFQGSLEDLRAVRE----AVSLPVLRKDFIID 83 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCC--EEEEEeCccccCCCHHHHHHHHH----hcCCCEEECCeecC
Confidence 355666665421 233456777778877653 44 12221 234555555553 56899998877777
Q ss_pred HHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEcc
Q 014886 298 LDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~ 343 (416)
..++..+.+.| +|++.+...-.......++...+...|+.+++..
T Consensus 84 ~~~v~~~~~~G-ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 84 PYQIYEARAAG-ADAVLLIVAALDDEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHHHHcC-CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 77888888888 5888765544444456777888899999976543
No 324
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.51 E-value=2.6e+02 Score=26.68 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=9.3
Q ss_pred EEEEEECCCceEEEE
Q 014886 78 AIRIELSNGCVGWGE 92 (416)
Q Consensus 78 iV~v~t~~G~~G~GE 92 (416)
|+.++..||....|.
T Consensus 3 I~D~TLRDG~Q~~~~ 17 (262)
T cd07948 3 IIDSTLREGEQFANA 17 (262)
T ss_pred EEECCCCCcCcCCCC
Confidence 455666678666554
No 325
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=46.47 E-value=78 Score=29.59 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHh-CCCCceeee------cCCCCCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCC
Q 014886 240 YKPQEAVEVLEKLYE-MGVTPVLFE------QPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLAD 311 (416)
Q Consensus 240 w~~~~A~~~~~~L~~-~~l~~~~iE------eP~~~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d 311 (416)
.+.++...+...-++ +++.+.|+| +|.+. +-.+++++ .+ ++||..|=-+.+.++++++++.| +|
T Consensus 132 ~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~---e~i~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-AD 203 (223)
T TIGR01768 132 YDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPP---ELVAEVKK----VLDKARLFVGGGIRSVEKAREMAEAG-AD 203 (223)
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCH---HHHHHHHH----HcCCCCEEEecCCCCHHHHHHHHHcC-CC
Confidence 444444444333333 455557999 55543 44555553 44 79999999999999999999877 57
Q ss_pred EEEe
Q 014886 312 VINI 315 (416)
Q Consensus 312 ~v~~ 315 (416)
.+.+
T Consensus 204 ~VVV 207 (223)
T TIGR01768 204 TIVT 207 (223)
T ss_pred EEEE
Confidence 7765
No 326
>PRK05927 hypothetical protein; Provisional
Probab=46.33 E-value=3e+02 Score=27.57 Aligned_cols=128 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHH----HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKED----IEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d----~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
.+++++.+.++++.+.|++.|=+--|.+++.+ .+.++.|++..|++.+- +|++.+...++ .-.|+.
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~-----~~s~~ei~~~~---~~~G~~-- 145 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPH-----FFSAVEIAHAA---QVSGIS-- 145 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCccc-----CCCHHHHHHHH---HhcCCC--
Confidence 47899999999999999999988655444433 34566677667766543 66666543332 223431
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEE
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~ 340 (416)
..+.+++|++ .|+-=..|= +.+-+.+.+. ++ +.+.|....+++++...|++.|+++.
T Consensus 146 ---------~~e~l~~Lk~-----aGl~~l~g~---~~Et~~~~~~----~~--~~p~k~~~~~rl~~i~~A~~lGi~~~ 202 (350)
T PRK05927 146 ---------TEQALERLWD-----AGQRTIPGG---GAEILSERVR----KI--ISPKKMGPDGWIQFHKLAHRLGFRST 202 (350)
T ss_pred ---------HHHHHHHHHH-----cCcccCCCC---CchhCCHHHh----hc--cCCCCCCHHHHHHHHHHHHHcCCCcC
Confidence 1233444542 122100110 1111111111 11 12334334688999999999999986
Q ss_pred EccCC
Q 014886 341 IGGMV 345 (416)
Q Consensus 341 ~~~~~ 345 (416)
.+.++
T Consensus 203 sg~l~ 207 (350)
T PRK05927 203 ATMMF 207 (350)
T ss_pred ceeEE
Confidence 55544
No 327
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.15 E-value=43 Score=33.67 Aligned_cols=143 Identities=15% Similarity=0.220 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC---CChhHHHHHHHHHHHh--CCCcEEEEeCCCC------CCHHHHHHHHHHHHh
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRAV--HPDSSFILDANEG------YKPQEAVEVLEKLYE 254 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG---~~~~~d~~~v~avr~~--g~~~~L~vDaN~~------w~~~~A~~~~~~L~~ 254 (416)
+.++..+.++++.+.||+.+=.-+- .+.+.-.++++.+-+. --++++++|.|.. ++.++ ++.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~d----l~~~~~ 87 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDD----LSFFKE 87 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTB----THHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHH----HHHHHH
Confidence 5667778888888999988755554 2233445556555442 3579999999974 23323 223344
Q ss_pred CCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC-----CCEEEeCCC-CCchH--HHH
Q 014886 255 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL-----ADVINIKLA-KVGVL--GAL 326 (416)
Q Consensus 255 ~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a-----~d~v~~k~~-k~Gi~--~~l 326 (416)
.|+...=+-+-+.. +..++++. + ++.|.+.=|..+..++..+++.++ .-.-|-=|- ..|+. -..
T Consensus 88 lGi~~lRlD~Gf~~---~~ia~ls~----n-g~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~ 159 (357)
T PF05913_consen 88 LGIDGLRLDYGFSG---EEIAKLSK----N-GIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFI 159 (357)
T ss_dssp HT-SEEEESSS-SC---HHHHHHTT----T--SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHH
T ss_pred cCCCEEEECCCCCH---HHHHHHHh----C-CCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHH
Confidence 44332234455543 44566653 4 799999999878888888887764 111222222 24743 357
Q ss_pred HHHHHHHHcCCcEE
Q 014886 327 EIIEVVRASGLNLM 340 (416)
Q Consensus 327 ~i~~~A~~~gi~~~ 340 (416)
+.-++-+++|++++
T Consensus 160 ~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 160 EKNQLLKEYGIKTA 173 (357)
T ss_dssp HHHHHHHHTT-EEE
T ss_pred HHHHHHHHCCCcEE
Confidence 88899999999974
No 328
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=45.14 E-value=2.9e+02 Score=26.50 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
+.+.+.+.++.+.+.|...+=+--. -..++=.+.++.+.+. .+++.+++= -++-+.++++++++..++.++.
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~g-v~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAG-VGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE-EESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEec-CcchhHHHHHHHHHHHhhcCce
Confidence 4566788888899999988766532 1234445556677775 567777763 3445899999999999999876
Q ss_pred ceeeecCCCC-CCHHHHHHhHHhhhccCCCeEEeCCC------CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHH
Q 014886 259 PVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADES------CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 259 ~~~iEeP~~~-~d~~~~~~l~~~~r~~~~iPIa~dEs------~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~ 330 (416)
-..+--|... .+.+++.+.-+.+...+++||..-.. -.+.+.+.++.+ .-.++-+|.+- | +....++..
T Consensus 99 ~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~--~~nv~giK~s~-~~~~~~~~~~~ 175 (289)
T PF00701_consen 99 AVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK--IPNVVGIKDSS-GDLERLIQLLR 175 (289)
T ss_dssp EEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT--STTEEEEEESS-SBHHHHHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc--CCcEEEEEcCc-hhHHHHHHHhh
Confidence 4566777532 22333322111122478899986432 234556677665 45788888654 4 544444333
Q ss_pred HHHHcCCcEEEc
Q 014886 331 VVRASGLNLMIG 342 (416)
Q Consensus 331 ~A~~~gi~~~~~ 342 (416)
.. ..++.++.|
T Consensus 176 ~~-~~~~~v~~G 186 (289)
T PF00701_consen 176 AV-GPDFSVFCG 186 (289)
T ss_dssp HS-STTSEEEES
T ss_pred hc-ccCeeeecc
Confidence 22 245666655
No 329
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=45.13 E-value=3.4e+02 Score=27.43 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=41.1
Q ss_pred CCeEEeCCCCCC-HHHHHHHHHcCCCCEEEeCCCCCchHHH--HHHHHHHHHcCCcEEEc
Q 014886 286 GVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVGVLGA--LEIIEVVRASGLNLMIG 342 (416)
Q Consensus 286 ~iPIa~dEs~~~-~~d~~~~i~~~a~d~v~~k~~k~Gi~~~--l~i~~~A~~~gi~~~~~ 342 (416)
+.-.-+|=|.++ .+.|.+++...-+|++|+--..+--... .+.+..|.++|+.+++=
T Consensus 143 GkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IM 202 (391)
T COG1453 143 GKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIM 202 (391)
T ss_pred CcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEE
Confidence 555556666654 4578899999999999988766532222 46778899999998763
No 330
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=45.12 E-value=1.4e+02 Score=28.22 Aligned_cols=153 Identities=19% Similarity=0.217 Sum_probs=91.6
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCC-cEEEEeCCC-------CC------
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPD-SSFILDANE-------GY------ 240 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~-~~L~vDaN~-------~w------ 240 (416)
+|.....++.+.+++ ++++..|-. |+.+...-=.|-+.|+.+.+. |.. +.+.+|+.. .|
T Consensus 75 iPltVGGGI~s~eD~----~~ll~aGAD--KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~g 148 (256)
T COG0107 75 IPLTVGGGIRSVEDA----RKLLRAGAD--KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHG 148 (256)
T ss_pred eeeEecCCcCCHHHH----HHHHHcCCC--eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecC
Confidence 444444456676654 456667765 444543223566788888887 443 566788743 34
Q ss_pred ----CHHHHHHHHHHHHhCCCCceeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC
Q 014886 241 ----KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 241 ----~~~~A~~~~~~L~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~ 310 (416)
+--++++|+++.++.+.. +-+=--+.. .|++-++.++ ....+|+.+.--+.++++|.+.+..+.+
T Consensus 149 Gr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~DGtk~GyDl~l~~~v~----~~v~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 149 GREDTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKAGYDLELTRAVR----EAVNIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CCcCCCcCHHHHHHHHHHcCCc-eEEEeeecccccccCcCHHHHHHHH----HhCCCCEEecCCCCcHHHHHHHHHhcCc
Confidence 224789999999998753 222222221 2455556555 4789999998889999999999988766
Q ss_pred CEEEe-CCCCCchHHHHHHHHHHHHcCCcE
Q 014886 311 DVINI-KLAKVGVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 311 d~v~~-k~~k~Gi~~~l~i~~~A~~~gi~~ 339 (416)
|..-. -+-..|...-..+-.+.+++|+++
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 65321 111223111223345556677765
No 331
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=44.33 E-value=4.7e+02 Score=28.80 Aligned_cols=139 Identities=20% Similarity=0.310 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~----g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
+.+..++++.++.+.|...+.+-+-. .++.+.++.|++. +-++.|..|-+-. +.-|+..++.++...+++-=
T Consensus 108 D~eatv~Qi~~l~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~--~~~Al~a~~~vdkiRINPGN 183 (733)
T PLN02925 108 DVEATVDQVMRIADKGADIVRITVQG--KKEADACFEIKNTLVQKGYNIPLVADIHFA--PSVALRVAECFDKIRVNPGN 183 (733)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCC--HHHHHHHHHhcCCeEECCcc
Confidence 45677899999999999999988753 5677777777763 5678999998754 45555556655543332100
Q ss_pred -------eecCC-CCCCH-HHHHH-------hHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHH
Q 014886 262 -------FEQPV-HRDDW-EGLGH-------VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG 324 (416)
Q Consensus 262 -------iEeP~-~~~d~-~~~~~-------l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~ 324 (416)
++.-. ..+++ +++.+ +.... +..++||=.|-+..++.+ ++++.- . + +--| +..
T Consensus 184 ~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~a-k~~~~~iRIGvN~GSLs~--ri~~~y--G----d-tp~gmVeS 253 (733)
T PLN02925 184 FADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKC-KKYGRAMRIGTNHGSLSD--RIMSYY--G----D-SPRGMVES 253 (733)
T ss_pred cCCccccccccccchhhhhhhHHHHHHHHHHHHHHH-HHCCCCEEEecCCcCchH--HHHHHh--C----C-ChHHHHHH
Confidence 11100 11111 12222 22211 256899998988887763 333321 1 1 1236 445
Q ss_pred HHHHHHHHHHcCCc
Q 014886 325 ALEIIEVVRASGLN 338 (416)
Q Consensus 325 ~l~i~~~A~~~gi~ 338 (416)
+++-+.+|+++|..
T Consensus 254 Ale~~~i~e~~~f~ 267 (733)
T PLN02925 254 AFEFARICRKLDYH 267 (733)
T ss_pred HHHHHHHHHHCCCC
Confidence 78888888887765
No 332
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=44.16 E-value=1.9e+02 Score=28.63 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCEEEEecCC-------------ChhHHHHHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 014886 191 AELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~-------------~~~~d~~~v~avr~~g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~~ 256 (416)
...+.++.+.|++.+-|.+.. .+++-++-+++..++| ..++|=...-.+.+.++...+++...+.+
T Consensus 101 ~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~ 180 (322)
T COG2896 101 ARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERG 180 (322)
T ss_pred HHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcC
Confidence 455566666777777666641 1233444455555554 23666666666677777777777777766
Q ss_pred CCceeeec
Q 014886 257 VTPVLFEQ 264 (416)
Q Consensus 257 l~~~~iEe 264 (416)
+.+.+||.
T Consensus 181 ~~lrfIE~ 188 (322)
T COG2896 181 AQLRFIEL 188 (322)
T ss_pred CceEEEEE
Confidence 55556663
No 333
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=43.34 E-value=3.2e+02 Score=26.48 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcEEEEe------------CCC--CCCHHHHHHHHHHHH-
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFILD------------ANE--GYKPQEAVEVLEKLY- 253 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~L~vD------------aN~--~w~~~~A~~~~~~L~- 253 (416)
+.++++++.||+.+-+.-. .+.++.++..+.+++. ..++.+-.| ..+ .-++++|.++.+...
T Consensus 88 e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~ 167 (281)
T PRK06806 88 EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDV 167 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCC
Confidence 4556678899999999976 4566777777777653 122222111 111 236999988876421
Q ss_pred hC-----C-CCceeeecCCCCCCHHHHHHhHHhhhccCCCeEE-eCCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 254 EM-----G-VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA-ADESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 254 ~~-----~-l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa-~dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
++ | ++..+ . .-+.-+++.++++++ .+++|+. .|=|=.+.+++.++++.| ++-+++.-
T Consensus 168 DyLAvaiG~~hg~~-~-~~~~l~~~~L~~i~~----~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~T 231 (281)
T PRK06806 168 DALAVAIGNAHGMY-N-GDPNLRFDRLQEIND----VVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVAT 231 (281)
T ss_pred CEEEEccCCCCCCC-C-CCCccCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEhH
Confidence 11 1 11011 1 113346888888875 5688887 456667889999999988 56666643
No 334
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.14 E-value=2.8e+02 Score=25.89 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CC-CcEEEEeC-CC------CCCH--HHHHHHHHHHHhCCCCce
Q 014886 192 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDA-NE------GYKP--QEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~-~~~L~vDa-N~------~w~~--~~A~~~~~~L~~~~l~~~ 260 (416)
+.++++.+.|...+ -+|...-+|.+.++.+.+. ++ .+.+.+|+ .+ +|.. ....+++++++++++. .
T Consensus 86 e~~~~~l~~Ga~kv--vigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~-~ 162 (232)
T PRK13586 86 EKAKRLLSLDVNAL--VFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELL-G 162 (232)
T ss_pred HHHHHHHHCCCCEE--EECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCC-E
Confidence 34566777887664 5564444677888888887 44 46778999 22 4622 1345677888887753 3
Q ss_pred eeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 014886 261 LFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (416)
Q Consensus 261 ~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v 313 (416)
+|=.-+.. .|++.++++++ . ..|+.+.=-+.+.+|+.++.+.| ++.+
T Consensus 163 ii~tdI~~dGt~~G~d~el~~~~~~----~-~~~viasGGv~s~~Dl~~l~~~G-~~gv 215 (232)
T PRK13586 163 IIFTYISNEGTTKGIDYNVKDYARL----I-RGLKEYAGGVSSDADLEYLKNVG-FDYI 215 (232)
T ss_pred EEEecccccccCcCcCHHHHHHHHh----C-CCCEEEECCCCCHHHHHHHHHCC-CCEE
Confidence 44444432 24555666542 2 33344444677888888877665 4443
No 335
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=42.31 E-value=3.1e+02 Score=26.14 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCC
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
....++.++.++++|+++..|.++
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEEE
Confidence 456778888899999997655443
No 336
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=42.24 E-value=1.2e+02 Score=28.70 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=43.7
Q ss_pred HHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 194 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
++++.+.||+.+=+-+.. .+|.+.++++-+. ++++-+..=-+.+.+.++|.++++..+
T Consensus 155 v~kAie~Gyk~IaVTV~~--~~~A~~iRele~~~~~~~~if~VHtTGis~eeA~~l~~~~D 213 (258)
T PF09872_consen 155 VKKAIEMGYKRIAVTVAD--AEDAKKIRELEKEEGVNIYIFGVHTTGISEEEAERLFEYAD 213 (258)
T ss_pred HHHHHHcCCceEEEEecC--HHHHHHHHHhhccCCCceEEEEEEccCCCHHHHHHHHHHhH
Confidence 466788999999888863 4577777777664 677777767778899999988766554
No 337
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=42.18 E-value=3.3e+02 Score=26.37 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec----CCCC----------CCHHHHHHhHHhh
Q 014886 216 DIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ----PVHR----------DDWEGLGHVSHIA 281 (416)
Q Consensus 216 d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe----P~~~----------~d~~~~~~l~~~~ 281 (416)
-.+.++.+++..++..+.+--++.++.++..+.++.+++.+.. +||= |-.. .|.+.+.++.+..
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad--~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v 163 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGAD--ALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCC--EEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 3333444433333556666666666777777777777665532 6663 3210 2344455555445
Q ss_pred hccCCCeEEeCCCC--CCHHHHHHHHHcCCCCEEE
Q 014886 282 KDKFGVSVAADESC--RSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 282 r~~~~iPIa~dEs~--~~~~d~~~~i~~~a~d~v~ 314 (416)
++.+++||..==+. .+..++.+.+....+|.+.
T Consensus 164 ~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 164 REAVKIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred HHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 55667777754332 2344554434333367665
No 338
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.99 E-value=2.9e+02 Score=25.70 Aligned_cols=126 Identities=19% Similarity=0.249 Sum_probs=73.1
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC------CC------CHH
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GY------KPQ 243 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~------~w------~~~ 243 (416)
+|+.+..+..+.+++ +++.+.|+.. +=+|.-.- |.+.++.+.+.++++.+.+|+.. +| ++.
T Consensus 74 ~pv~~gGGIrs~edv----~~l~~~G~~~--vivGtaa~-~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~ 146 (228)
T PRK04128 74 LKVQVGGGLRTYESI----KDAYEIGVEN--VIIGTKAF-DLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVE 146 (228)
T ss_pred CCEEEcCCCCCHHHH----HHHHHCCCCE--EEECchhc-CHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHH
Confidence 344555666676654 4456678765 44563222 67788888877667889999843 24 344
Q ss_pred HHHHHHHHHHhCCCCceeeecCCCCC-CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 244 EAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 244 ~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+.+++++.+ +. .+|=.-+..+ ...|+..+.+ ...++||.+.=-+.+.+|+.++.+.|+-.++.-+
T Consensus 147 ~~~~~~~~~----~~-~ii~t~i~~dGt~~G~d~l~~---~~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~ 212 (228)
T PRK04128 147 DAYEMLKNY----VN-RFIYTSIERDGTLTGIEEIER---FWGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGK 212 (228)
T ss_pred HHHHHHHHH----hC-EEEEEeccchhcccCHHHHHH---hcCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEh
Confidence 444444433 21 2444444432 2233333432 1246899888888999999988887643334333
No 339
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.95 E-value=2.6e+02 Score=25.12 Aligned_cols=139 Identities=10% Similarity=0.090 Sum_probs=85.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (416)
-..++++..+.++.+++.|.+.+.+..-. ....+.++.+++..+. +.+.++.-++.+++ +.+ -+.+. .++
T Consensus 19 r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~~~e~~~~~~~~~~~--~~~g~gtvl~~d~~-~~A---~~~gA--dgv 88 (187)
T PRK07455 19 RAPDLELGLQMAEAVAAGGMRLIEITWNS--DQPAELISQLREKLPE--CIIGTGTILTLEDL-EEA---IAAGA--QFC 88 (187)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCC--cEEeEEEEEcHHHH-HHH---HHcCC--CEE
Confidence 34578888899999999999999998753 2345666677765543 23334455556553 222 22343 266
Q ss_pred ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC--chHHHHHHHHHHHHc-CCcE
Q 014886 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--GVLGALEIIEVVRAS-GLNL 339 (416)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~--Gi~~~l~i~~~A~~~-gi~~ 339 (416)
=-|... .+. ...+. ..+++...| ++|+.++.+..+.| +|++-+=++.. |+.... .+.+.. ++++
T Consensus 89 ~~p~~~--~~~-~~~~~----~~~~~~i~G--~~t~~e~~~A~~~G-adyv~~Fpt~~~~G~~~l~---~~~~~~~~ipv 155 (187)
T PRK07455 89 FTPHVD--PEL-IEAAV----AQDIPIIPG--ALTPTEIVTAWQAG-ASCVKVFPVQAVGGADYIK---SLQGPLGHIPL 155 (187)
T ss_pred ECCCCC--HHH-HHHHH----HcCCCEEcC--cCCHHHHHHHHHCC-CCEEEECcCCcccCHHHHH---HHHhhCCCCcE
Confidence 555432 222 22222 346777788 89999999998887 69998877653 333222 333445 5888
Q ss_pred EEccC
Q 014886 340 MIGGM 344 (416)
Q Consensus 340 ~~~~~ 344 (416)
+.-+-
T Consensus 156 vaiGG 160 (187)
T PRK07455 156 IPTGG 160 (187)
T ss_pred EEeCC
Confidence 76543
No 340
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.62 E-value=1.8e+02 Score=28.15 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHH-HhCCCCceeeec--C-CCCCCHHHHHHhHHhhh--cc-CCCeEE-eCCCCCCHHHHHHHHHcCCC
Q 014886 239 GYKPQEAVEVLEKL-YEMGVTPVLFEQ--P-VHRDDWEGLGHVSHIAK--DK-FGVSVA-ADESCRSLDDVKKIVKGNLA 310 (416)
Q Consensus 239 ~w~~~~A~~~~~~L-~~~~l~~~~iEe--P-~~~~d~~~~~~l~~~~r--~~-~~iPIa-~dEs~~~~~d~~~~i~~~a~ 310 (416)
.++.++=+++++.| +.+|+. .||= | .++++++..+++.+... .. .++.+. + ..+..++..+++.| +
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~--~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~A~~~g-~ 88 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVD--RIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGF---VDGDKSVDWIKSAG-A 88 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCC--EEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEe---cCcHHHHHHHHHCC-C
Confidence 46888889999996 888985 8998 6 56666666666653110 00 023332 3 23456788888776 4
Q ss_pred CEEEeCC-----------CCC--c-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 311 DVINIKL-----------AKV--G-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 311 d~v~~k~-----------~k~--G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+.+++=. .+. - +....+++.+|+++|+.+..+.+
T Consensus 89 ~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~ 136 (280)
T cd07945 89 KVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE 136 (280)
T ss_pred CEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 6655432 111 1 33456789999999998876554
No 341
>PRK14863 bifunctional regulator KidO; Provisional
Probab=41.42 E-value=3.3e+02 Score=26.22 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHH-HHHhCCCcEEEEeC-CCCCCHHHHH----HHHHHHHhCCCCc
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRA-IRAVHPDSSFILDA-NEGYKPQEAV----EVLEKLYEMGVTP 259 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~a-vr~~g~~~~L~vDa-N~~w~~~~A~----~~~~~L~~~~l~~ 259 (416)
+.++..+.++.+.+.|++.|----.. ....+.+-+ ++. ....++.+-. +..++.+... +-+++|.--.+.+
T Consensus 30 ~~~ea~~~l~~A~~~Gin~~DTA~~Y--G~SE~~lG~al~~-~~~~~~~i~tk~~~~~~~~i~~~~e~SL~rLg~d~iDl 106 (292)
T PRK14863 30 PEAEARDILNIAARAGLSVLDASGLF--GRAETVLGQLIPR-PVPFRVTLSTVRADRGPDFVEAEARASLRRMGVERADA 106 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEecchhh--hhHHHHHhhhhcc-CCceEeecccccccccHHHHHHHHHHHHHHhCCCccCe
Confidence 55677888888999999998633211 111222222 221 1111222211 1123333222 2333343222344
Q ss_pred eeeecCCC---CC---CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCch-HHHHHHHHHH
Q 014886 260 VLFEQPVH---RD---DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGV-LGALEIIEVV 332 (416)
Q Consensus 260 ~~iEeP~~---~~---d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi-~~~l~i~~~A 332 (416)
+++-.|-+ +. -++.+.++. +.+.-=..|=|-++..++..+.+...++++|+...-+-- .+...+..+|
T Consensus 107 ~~lH~~~~~~~~~~~~~~~~l~~l~-----~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~ 181 (292)
T PRK14863 107 ILVHSPTELFGPHGAALWERLQALK-----DQGLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRI 181 (292)
T ss_pred EEEeCchhhcCcchHHHHHHHHHHH-----HcCCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHH
Confidence 56666532 11 134444443 234444556677888888777766678899887665321 1123578999
Q ss_pred HHcCCcEEEccCCc
Q 014886 333 RASGLNLMIGGMVE 346 (416)
Q Consensus 333 ~~~gi~~~~~~~~e 346 (416)
+++|+.++..+.+.
T Consensus 182 ~~~gi~v~a~spl~ 195 (292)
T PRK14863 182 AGMGVEVHLRSIFL 195 (292)
T ss_pred HhCCCEEEEechhh
Confidence 99999988766553
No 342
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=40.86 E-value=2.2e+02 Score=28.88 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=53.0
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc---h---HHHHH-HHHHHHHc--CCcEE
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG---V---LGALE-IIEVVRAS--GLNLM 340 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G---i---~~~l~-i~~~A~~~--gi~~~ 340 (416)
+|+.+++|++ .++.||...+- .+.++...+++.| +|++.+-- .| + ..+.. +.+++++. +++++
T Consensus 233 tW~di~~lr~----~~~~pvivKgV-~s~~dA~~a~~~G-vd~I~Vs~--hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRD----FWDGPMVIKGI-LDPEDARDAVRFG-ADGIVVSN--HGGRQLDGVLSSARALPAIADAVKGDITIL 304 (381)
T ss_pred CHHHHHHHHH----hCCCCEEEEec-CCHHHHHHHHhCC-CCEEEECC--CCCCCCCCcccHHHHHHHHHHHhcCCCeEE
Confidence 5677788764 78999999987 7889999999988 68875542 22 1 11222 23334443 68998
Q ss_pred EccCCchHHHHHHHHHHH
Q 014886 341 IGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 341 ~~~~~es~ig~~a~~hla 358 (416)
..+-+.++.-+.-++.|.
T Consensus 305 ~dGGIr~g~Di~KALaLG 322 (381)
T PRK11197 305 ADSGIRNGLDVVRMIALG 322 (381)
T ss_pred eeCCcCcHHHHHHHHHcC
Confidence 887776665554444443
No 343
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=40.81 E-value=3.5e+02 Score=26.32 Aligned_cols=122 Identities=12% Similarity=0.177 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh--CCCcEEE------------EeCCCCC-CHHHHHHHHHHHHhC
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFI------------LDANEGY-KPQEAVEVLEKLYEM 255 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~--g~~~~L~------------vDaN~~w-~~~~A~~~~~~L~~~ 255 (416)
+.++++++.||+.+-+.-. .+.++.++..+.+++. ..++.+- +.....+ ++++|.++.+.=-++
T Consensus 90 ~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~ 169 (293)
T PRK07315 90 EDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDF 169 (293)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCE
Confidence 3556678899999999976 4667888887777762 1122110 0111234 699999987422221
Q ss_pred -CCC--ce--eeecCCCCCCHHHHHHhHHhhhccC-CCeEE-eCCCCCCHHHHHHHHHcCCCCEEEeCCC
Q 014886 256 -GVT--PV--LFEQPVHRDDWEGLGHVSHIAKDKF-GVSVA-ADESCRSLDDVKKIVKGNLADVINIKLA 318 (416)
Q Consensus 256 -~l~--~~--~iEeP~~~~d~~~~~~l~~~~r~~~-~iPIa-~dEs~~~~~d~~~~i~~~a~d~v~~k~~ 318 (416)
.+. .. .+-.+.+.-+++.++++++ .+ ++|+. .|=|=.+.++++++++.| ++-+|+.-.
T Consensus 170 LAv~iG~vHG~y~t~~k~l~~e~L~~i~~----~~~~iPlVlhGGSGi~~e~~~~~i~~G-i~KiNv~T~ 234 (293)
T PRK07315 170 LAAGIGNIHGPYPENWEGLDLDHLEKLTE----AVPGFPIVLHGGSGIPDDQIQEAIKLG-VAKVNVNTE 234 (293)
T ss_pred EeeccccccccCCCCCCcCCHHHHHHHHH----hccCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEccH
Confidence 110 11 0233334567888888875 55 48877 566777888999999998 566676543
No 344
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=40.80 E-value=5e+02 Score=28.07 Aligned_cols=130 Identities=13% Similarity=0.151 Sum_probs=58.0
Q ss_pred HHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCc--EEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCC
Q 014886 191 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~--~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (416)
...++.+.+.|...|.|-.. .+++.-..-++.+++.|-.. .+..=.....+.+...++++.+.+.+.....|=+-.-
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G 179 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAG 179 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 33444455566666555433 22322222344455544321 1221112234556666666666666555445555544
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEeCCCCCc
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLAKVG 321 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~dEs~---~~~~d~~~~i~~~a~d~v~~k~~k~G 321 (416)
.-......++.+.+++..++||...=+. .........+++| +|++..-+.-+|
T Consensus 180 ~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAG-a~~vD~ai~glG 235 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAG-IDGVDTAISSMS 235 (593)
T ss_pred CcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcC-CCEEEecccccc
Confidence 4444444444433444455665542111 1112233445555 466555444433
No 345
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=40.19 E-value=1.5e+02 Score=30.81 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEEEec-CC---ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 014886 185 VSPAEAAELASKYRKQ--GFTTLKLKV-GK---NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 248 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~--G~~~~KiKv-G~---~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~ 248 (416)
.+++++.+.+.+..+. +.+.+-|-- |. .++.+++.++.+++..+++.+.|+.|+....+.+.++
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L 129 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRL 129 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHH
Confidence 5788888887776553 345555543 32 2356788999999988889999999998765544333
No 346
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=39.96 E-value=3.5e+02 Score=26.03 Aligned_cols=149 Identities=15% Similarity=0.129 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
+.+.+...++.+.+.|.+.+=+--. -+.++=.+.++.+.+. .+++.+++=.. . +.++++++++..++.|..
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 4567788889999999988765532 1334445556766775 45677887664 4 889999999999998875
Q ss_pred ceeeecCCCC-CCHHH----HHHhHHhhhccCCCeEEeCC---CCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHH
Q 014886 259 PVLFEQPVHR-DDWEG----LGHVSHIAKDKFGVSVAADE---SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEII 329 (416)
Q Consensus 259 ~~~iEeP~~~-~d~~~----~~~l~~~~r~~~~iPIa~dE---s~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~ 329 (416)
-..+=-|.-. .+.++ ++++. +.+++||..=. .-.+++.+.++.+. .-.++-+|-+ +| +....++.
T Consensus 97 ~v~~~pP~y~~~~~~~i~~~f~~v~----~~~~~pi~lYn~~g~~l~~~~l~~L~~~-~pnivgiKds-~~d~~~~~~~~ 170 (289)
T cd00951 97 GILLLPPYLTEAPQEGLYAHVEAVC----KSTDLGVIVYNRANAVLTADSLARLAER-CPNLVGFKDG-VGDIELMRRIV 170 (289)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEEEEEeC-CCCHHHHHHHH
Confidence 3344444321 12233 33343 36789987543 23456667777641 2467777875 45 65555544
Q ss_pred HHHHHcCCcEEEcc
Q 014886 330 EVVRASGLNLMIGG 343 (416)
Q Consensus 330 ~~A~~~gi~~~~~~ 343 (416)
+.. ..+..+..|.
T Consensus 171 ~~~-~~~~~v~~G~ 183 (289)
T cd00951 171 AKL-GDRLLYLGGL 183 (289)
T ss_pred Hhc-CCCeEEEeCC
Confidence 322 2355666654
No 347
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=39.87 E-value=3.4e+02 Score=25.82 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEec-----C---CChhHHHHHHHHHHHh---CCCcEEEEeCCCCCCHHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKV-----G---KNLKEDIEVLRAIRAV---HPDSSFILDANEGYKPQEAVE 247 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKv-----G---~~~~~d~~~v~avr~~---g~~~~L~vDaN~~w~~~~A~~ 247 (416)
.+++++.+.++++.+.|-..++|-. + .+.+++++|+..+-+. .-+..|.+|....-..+.|++
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~ 93 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALE 93 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHH
Confidence 4688899999999999999999842 1 1345566665544332 127889999877666666554
No 348
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=39.78 E-value=2.1e+02 Score=27.86 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=65.2
Q ss_pred HHHHHcCCCEEEEecCC--C--------hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec
Q 014886 195 SKYRKQGFTTLKLKVGK--N--------LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (416)
Q Consensus 195 ~~~~~~G~~~~KiKvG~--~--------~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (416)
+-+.+.||..+-+-+|. | .-.+.+.|+++++.. ++.++.=...++ ..-++.|++.++. +|-+
T Consensus 31 ~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V-~iPVigk~Righ-----~~Ea~~L~~~GvD--iID~ 102 (293)
T PRK04180 31 KIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAV-SIPVMAKARIGH-----FVEAQILEALGVD--YIDE 102 (293)
T ss_pred HHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhC-CCCeEEeehhhH-----HHHHHHHHHcCCC--EEec
Confidence 33345677776665551 1 124567777888864 455554444333 3445667888875 7743
Q ss_pred ---CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 265 ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 265 ---P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+.|.+ +.+..++ .++++|++.| +.|+.+..+.++.| +|++.-+
T Consensus 103 Te~lrpad--~~~~~~K----~~f~~~fmad--~~~l~EAlrai~~G-admI~Tt 148 (293)
T PRK04180 103 SEVLTPAD--EEYHIDK----WDFTVPFVCG--ARNLGEALRRIAEG-AAMIRTK 148 (293)
T ss_pred cCCCCchH--HHHHHHH----HHcCCCEEcc--CCCHHHHHHHHHCC-CCeeecc
Confidence 33322 2244443 3669999997 56788888999988 6999888
No 349
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=38.68 E-value=3.9e+02 Score=26.21 Aligned_cols=133 Identities=17% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHH-HHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDI-EVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~-~~v~avr~~g~~~-~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
.+.+++...++.+.+.|.+.|++--| +-+..|+ +.++.+++.+ +. .+.+..|+..-. +.++.|.+.++. +
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~-~l~~i~itTNG~ll~----~~~~~L~~aGl~--~ 117 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLP-GLEELSLTTNGSRLA----RFAAELADAGLK--R 117 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCC-CCceEEEEeChhHHH----HHHHHHHHcCCC--e
Confidence 35677777777777889888887655 2233343 3455565543 33 688899987633 356677777764 4
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH----HHHHHcCCCCEEEeCCCC-Cc--hHHHHHHHHHHHH
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV----KKIVKGNLADVINIKLAK-VG--VLGALEIIEVVRA 334 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~----~~~i~~~a~d~v~~k~~k-~G--i~~~l~i~~~A~~ 334 (416)
+-=-+..-+.+.+.+++. . .+.+.+ ..+.+.|- .-+.+...- -| ..+..++++++++
T Consensus 118 v~ISlDs~~~e~~~~i~~-----~----------g~~~~vl~~i~~~~~~Gi-~~v~in~v~~~g~N~~ei~~~~~~~~~ 181 (329)
T PRK13361 118 LNISLDTLRPELFAALTR-----N----------GRLERVIAGIDAAKAAGF-ERIKLNAVILRGQNDDEVLDLVEFCRE 181 (329)
T ss_pred EEEEeccCCHHHhhhhcC-----C----------CCHHHHHHHHHHHHHcCC-CceEEEEEEECCCCHHHHHHHHHHHHh
Confidence 443444444455555431 1 122222 22333332 112222111 14 4567888999999
Q ss_pred cCCcEE
Q 014886 335 SGLNLM 340 (416)
Q Consensus 335 ~gi~~~ 340 (416)
.|+.+.
T Consensus 182 ~gi~~~ 187 (329)
T PRK13361 182 RGLDIA 187 (329)
T ss_pred cCCeEE
Confidence 988764
No 350
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=38.65 E-value=2.7e+02 Score=26.81 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=76.1
Q ss_pred eeeeeEeecCCC---HHHHHHHHHHHHHcCCCEEEEecCC-------ChhHHHHH----HHHHHHhCCCcEEEEeCCCCC
Q 014886 175 TITTDITIPIVS---PAEAAELASKYRKQGFTTLKLKVGK-------NLKEDIEV----LRAIRAVHPDSSFILDANEGY 240 (416)
Q Consensus 175 ~v~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~KiKvG~-------~~~~d~~~----v~avr~~g~~~~L~vDaN~~w 240 (416)
.+++.+++...+ .++..+.++++. .|...+-+.+.. .+..+.+. ++.+++. .++.+.+=--...
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKL~p~~ 173 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA-VDIPVFVKLSPNF 173 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH-HSSEEEEEE-STS
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 466677776666 677777777655 788899988761 22333333 3334443 3566666555544
Q ss_pred CHHHHHHHHHHHHhCCCCc-e----ee-------e--cCCCCCC----------HHHHHHhHHhhhccCC--CeEEeCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTP-V----LF-------E--QPVHRDD----------WEGLGHVSHIAKDKFG--VSVAADES 294 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~-~----~i-------E--eP~~~~d----------~~~~~~l~~~~r~~~~--iPIa~dEs 294 (416)
+.......+..+.+.++.- . +. | +|+.... .-.++.+++ +++.++ +||.+-=-
T Consensus 174 ~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~-~~~~~~~~i~Iig~GG 252 (295)
T PF01180_consen 174 TDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRE-LRKALGQDIPIIGVGG 252 (295)
T ss_dssp SCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHH-HHHHTTTSSEEEEESS
T ss_pred CchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHH-HHhccccceEEEEeCC
Confidence 4333334444444433210 0 11 1 1222100 112344332 334556 99999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEeC
Q 014886 295 CRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 295 ~~~~~d~~~~i~~~a~d~v~~k 316 (416)
+++.+|+.+++..|+ +.+|+=
T Consensus 253 I~s~~da~e~l~aGA-~~Vqv~ 273 (295)
T PF01180_consen 253 IHSGEDAIEFLMAGA-SAVQVC 273 (295)
T ss_dssp --SHHHHHHHHHHTE-SEEEES
T ss_pred cCCHHHHHHHHHhCC-CHheec
Confidence 999999999999995 999883
No 351
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=38.54 E-value=3e+02 Score=28.39 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhC-CC-cEEEEeCCCCCC-HHHHHHHHHHHH-----hCCCCceee
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVH-PD-SSFILDANEGYK-PQEAVEVLEKLY-----EMGVTPVLF 262 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g-~~-~~L~vDaN~~w~-~~~A~~~~~~L~-----~~~l~~~~i 262 (416)
...+++.++|-..+.=+.| +.+++-++.++.+++.+ .| ..+.+|.|.+-+ .+.|.+.++.-. .+|
T Consensus 5 ~~l~~a~~~~~~~~Qpr~G~~~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~ln------ 78 (428)
T cd00245 5 KKLEKADKEGKLVVQPRAGFPLLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLN------ 78 (428)
T ss_pred HHHHHHHhcCCEeecCCCCCCCHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccC------
Confidence 3455666788888877777 67888999999999985 66 478999998875 666677666542 222
Q ss_pred ecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHc--------CCCCEEEeCCCCC-c----hHHH---H
Q 014886 263 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--------NLADVINIKLAKV-G----VLGA---L 326 (416)
Q Consensus 263 EeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~--------~a~d~v~~k~~k~-G----i~~~---l 326 (416)
==|+..+.++..++|-. .++.||-.-=.-.+...+.+++-. |.+. +++..+|. . +..+ -
T Consensus 79 G~P~v~~g~~~~R~l~~----~~~~PlqvRhGt~d~~~l~e~~~a~g~~a~egg~is-y~~py~k~~~Le~si~~wqy~~ 153 (428)
T cd00245 79 GFPIVNHGVKTCRKLLE----GVDFPVQVRHGTPDARLLAEIAIASGFDATEGGPIS-YNLPYSKNVPLEKSIENWQYCD 153 (428)
T ss_pred CCCcccccHHHHHHHHH----hCCCCEeeccCCccHHHHHHHHHHhCccccccccee-eccccCCCCCHHHHHHHHHHHH
Confidence 11887778888888865 678888432222333334333322 2222 23444443 3 3444 3
Q ss_pred HHHHHHHHcCCcEE
Q 014886 327 EIIEVVRASGLNLM 340 (416)
Q Consensus 327 ~i~~~A~~~gi~~~ 340 (416)
++..+=.++|+++-
T Consensus 154 rl~~~y~e~gv~in 167 (428)
T cd00245 154 RLVGFYEENGVPIN 167 (428)
T ss_pred HHHHHHHhcCceec
Confidence 55555567888873
No 352
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=38.37 E-value=3.4e+02 Score=25.82 Aligned_cols=98 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred eCCCCCCHHHHHHHHHHHHhCCCCceeeec------C-----CCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 235 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ------P-----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 235 DaN~~w~~~~A~~~~~~L~~~~l~~~~iEe------P-----~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
|.....+.+++++.++.+.+-|.. +|.= | -+.++++.+..+-+.++...++||+.| -+++.-++.
T Consensus 16 dg~~~~~~~~~~~~a~~~~~~GAd--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID--T~~~~v~e~ 91 (257)
T cd00739 16 DGGRFLSLDKAVAHAEKMIAEGAD--IIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD--TFRAEVARA 91 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe--CCCHHHHHH
Q ss_pred HHHcCCCCEEE-eCCCCCchHHHHHHHHHHHHcCCcEEE
Q 014886 304 IVKGNLADVIN-IKLAKVGVLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 304 ~i~~~a~d~v~-~k~~k~Gi~~~l~i~~~A~~~gi~~~~ 341 (416)
.++.| ++++| +....-- -+++.+++++|.+++.
T Consensus 92 al~~G-~~iINdisg~~~~----~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 92 ALEAG-ADIINDVSGGSDD----PAMLEVAAEYGAPLVL 125 (257)
T ss_pred HHHhC-CCEEEeCCCCCCC----hHHHHHHHHcCCCEEE
No 353
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.20 E-value=3e+02 Score=24.73 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 320 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~ 320 (416)
+.+++.+.++.+-+.|+. |+|=.....+....-+..+ +....-....-.+.+.+++..+++.|+ |++..- .
T Consensus 22 ~~~~~~~~~~~~~~~Gv~--~vqlr~k~~~~~e~~~~~~---~~~~~~~~g~gtvl~~d~~~~A~~~gA-dgv~~p--~- 92 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMR--LIEITWNSDQPAELISQLR---EKLPECIIGTGTILTLEDLEEAIAAGA-QFCFTP--H- 92 (187)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHH---HhCCCcEEeEEEEEcHHHHHHHHHcCC-CEEECC--C-
Confidence 789999999999998985 9998877655433322221 111221122235666788888888884 776331 1
Q ss_pred chHHHHHHHHHHHHcCCcEEEccCC
Q 014886 321 GVLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 321 Gi~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
+. ..+...++.+++..++|+..
T Consensus 93 -~~--~~~~~~~~~~~~~~i~G~~t 114 (187)
T PRK07455 93 -VD--PELIEAAVAQDIPIIPGALT 114 (187)
T ss_pred -CC--HHHHHHHHHcCCCEEcCcCC
Confidence 11 34567888999999999653
No 354
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=38.05 E-value=1.6e+02 Score=29.03 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=47.2
Q ss_pred ecCCCHH-HHHHHHHHHHHcCCCEEEEecC-----CChhHHHHHHHHHHHhCCCcEEEEeCCCC-CCHHHHHHHHHHH
Q 014886 182 IPIVSPA-EAAELASKYRKQGFTTLKLKVG-----KNLKEDIEVLRAIRAVHPDSSFILDANEG-YKPQEAVEVLEKL 252 (416)
Q Consensus 182 ~~~~~~~-~~~~~~~~~~~~G~~~~KiKvG-----~~~~~d~~~v~avr~~g~~~~L~vDaN~~-w~~~~A~~~~~~L 252 (416)
++..+.+ ...+.++.+.+.|-..+-|+.- ..-..|.+.|..|++..++ +-|-+|+. ++.++|.+.++.-
T Consensus 145 lG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 145 LGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred cccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHhh
Confidence 4544443 2334445555677888888853 1123688889999988665 88889988 7899998887763
No 355
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=37.61 E-value=3.3e+02 Score=25.11 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHhCCC--cEEEEeCCCCCCHHHHHHHHHHHHhC
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAVHPD--SSFILDANEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~g~~--~~L~vDaN~~w~~~~A~~~~~~L~~~ 255 (416)
..+.+.-..+++++++.|-.-+.+-+. .+.+.-.+.++++++.-.+ +++.+.... ++.++-.+..+...+.
T Consensus 66 ~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~-L~~~ei~~a~~ia~ea 144 (211)
T TIGR00126 66 ASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL-LTDEEIRKACEICIDA 144 (211)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC-CCHHHHHHHHHHHHHh
Confidence 344555577788899999999987764 3444555567777776223 567778766 8877767777777788
Q ss_pred CCCceeeecC--CCC--CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 256 GVTPVLFEQP--VHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 256 ~l~~~~iEeP--~~~--~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
|.. |+--. +.+ -..+..+.+++..+.+.++-++. -+.+.+++..+++.|+
T Consensus 145 GAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaaG--Girt~~~a~~~i~aGa 198 (211)
T TIGR00126 145 GAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKASG--GVRTAEDAIAMIEAGA 198 (211)
T ss_pred CCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEeC--CCCCHHHHHHHHHHhh
Confidence 864 88877 321 12233333333222333444444 4558899999998874
No 356
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=37.56 E-value=5e+02 Score=27.17 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHhCCCCceeeecCCCCC
Q 014886 193 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDa--N~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (416)
.++.+.+.|...|.+--. .+++.-...++.+++.|..+.+++-. .-..+.+...++++.+.+.|.....|-+-.-.-
T Consensus 110 fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l 189 (468)
T PRK12581 110 FISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGIL 189 (468)
T ss_pred HHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 345555666666554433 23333333455555554332222211 223455666666666666665545555555444
Q ss_pred CHHHHHHhHHhhhccCCCeEEe
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
......++-..+++..++||..
T Consensus 190 ~P~~v~~Lv~alk~~~~~pi~~ 211 (468)
T PRK12581 190 TPKAAKELVSGIKAMTNLPLIV 211 (468)
T ss_pred CHHHHHHHHHHHHhccCCeEEE
Confidence 4444444443344445566654
No 357
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=37.41 E-value=4.3e+02 Score=26.27 Aligned_cols=140 Identities=17% Similarity=0.184 Sum_probs=81.7
Q ss_pred EeecCCCHHHHHHHHHHHHHc-CCCEEEEecCCC----hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 180 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN----LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~-G~~~~KiKvG~~----~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
.|.+..+.+|....++-.++. |-+-+|+.|=++ ..+-.+.|++.++. -.++..+.=.+ =|+.+ +++|+
T Consensus 142 NTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~--~d~~~----a~~l~ 215 (326)
T PRK11840 142 NTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCS--DDPIA----AKRLE 215 (326)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeC--CCHHH----HHHHH
Confidence 356677888876666555554 678899998421 12234445555554 23344322221 13444 45566
Q ss_pred hCCCCceeeec---CCC----CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHH
Q 014886 254 EMGVTPVLFEQ---PVH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGAL 326 (416)
Q Consensus 254 ~~~l~~~~iEe---P~~----~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l 326 (416)
+++. .-+|- |+- ..+.+.++.+.+ ..++||..|=-+.+..|+...++.| +|.+-+.- |+..+.
T Consensus 216 ~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e----~~~vpVivdAGIg~~sda~~AmelG-adgVL~nS---aIa~a~ 285 (326)
T PRK11840 216 DAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVE----GATVPVLVDAGVGTASDAAVAMELG-CDGVLMNT---AIAEAK 285 (326)
T ss_pred hcCC--EEEeeccccccCCCCCCCHHHHHHHHH----cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEcc---eeccCC
Confidence 6664 23442 221 125566666653 5689999999999999999999999 58776543 233333
Q ss_pred HHHHHHHHc
Q 014886 327 EIIEVVRAS 335 (416)
Q Consensus 327 ~i~~~A~~~ 335 (416)
.=..||+++
T Consensus 286 dPv~Ma~A~ 294 (326)
T PRK11840 286 NPVLMARAM 294 (326)
T ss_pred CHHHHHHHH
Confidence 334455544
No 358
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=37.23 E-value=2.1e+02 Score=28.86 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-----ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGK-----NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~-----~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
.+++++.+.++.+.+.|.+.|.+--|. +++.=.+.++++++.+|++.+ -++ ..+.++. +.|.+.|+.
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i--~~g-~lt~e~l----~~Lk~aGv~ 175 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSI--EVQ-PLSEEEY----AELVELGLD 175 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCcee--ccC-CCCHHHH----HHHHHcCCC
Confidence 478899999999999999999987663 234445566777766776544 333 4566654 566666653
No 359
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=37.08 E-value=2.8e+02 Score=26.98 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec---CCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 215 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 215 ~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
.|.+.|++|++.. ++.++-=...++ ..-++.|+..++. +|-+ +.|.+ +.+..++ .++++|++.
T Consensus 54 ~~p~~I~~I~~~V-~iPVig~~kigh-----~~Ea~~L~~~GvD--iIDeTe~lrPad--e~~~~~K----~~f~vpfma 119 (287)
T TIGR00343 54 SDPKMIKEIMDAV-SIPVMAKVRIGH-----FVEAQILEALGVD--YIDESEVLTPAD--WTFHIDK----KKFKVPFVC 119 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEEeeccH-----HHHHHHHHHcCCC--EEEccCCCCcHH--HHHHHHH----HHcCCCEEc
Confidence 4677788888863 333332222222 3345667778874 7743 33322 2244443 356899999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
| +.|+.+..+.++.| +|++.-+.
T Consensus 120 d--~~~l~EAlrai~~G-admI~Tt~ 142 (287)
T TIGR00343 120 G--ARDLGEALRRINEG-AAMIRTKG 142 (287)
T ss_pred c--CCCHHHHHHHHHCC-CCEEeccc
Confidence 7 56788888888888 69998884
No 360
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=36.84 E-value=2.7e+02 Score=27.99 Aligned_cols=112 Identities=18% Similarity=0.305 Sum_probs=61.5
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCC
Q 014886 181 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMG 256 (416)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~----g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~ 256 (416)
+....+.+...+++.++.+.|...+.+-+-. .++.+.+..+++. +-.+.|..|-+--|. -|+..++.++...
T Consensus 24 ~t~t~Dv~atv~QI~~L~~aGceivRvavp~--~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~--lAl~a~~~v~kiR 99 (359)
T PF04551_consen 24 NTDTRDVEATVAQIKRLEEAGCEIVRVAVPD--MEAAEALKEIKKRLRALGSPIPLVADIHFDYR--LALEAIEAVDKIR 99 (359)
T ss_dssp -S-TT-HHHHHHHHHHHHHCT-SEEEEEE-S--HHHHHHHHHHHHHHHCTT-SS-EEEEESTTCH--HHHHHHHC-SEEE
T ss_pred CCCcccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHHHHHHHHhhccCCCCCCeeeecCCCHH--HHHHHHHHhCeEE
Confidence 3445567788999999999999999988853 4666666666653 567999999986664 3455555555443
Q ss_pred CCce-e---eecCCCCCC-HHHHHHhHHhhhccCCCeEEeCCCCCCHH
Q 014886 257 VTPV-L---FEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLD 299 (416)
Q Consensus 257 l~~~-~---iEeP~~~~d-~~~~~~l~~~~r~~~~iPIa~dEs~~~~~ 299 (416)
+++- + +++=. .+ .+..+.+.+..+ ..++||=.|-+..++.
T Consensus 100 INPGNi~~~~~~~~--g~~~~~~~~vv~~ak-e~~ipIRIGvN~GSL~ 144 (359)
T PF04551_consen 100 INPGNIVDEFQEEL--GSIREKVKEVVEAAK-ERGIPIRIGVNSGSLE 144 (359)
T ss_dssp E-TTTSS----SS---SS-HHHHHHHHHHHH-HHT-EEEEEEEGGGS-
T ss_pred ECCCcccccccccc--cchHHHHHHHHHHHH-HCCCCEEEecccccCc
Confidence 3210 1 11111 22 233444443332 4588988886665554
No 361
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=36.76 E-value=2.4e+02 Score=26.48 Aligned_cols=132 Identities=14% Similarity=0.254 Sum_probs=74.0
Q ss_pred eeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC--
Q 014886 178 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM-- 255 (416)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~-- 255 (416)
....+-..+|+... +.+.+.|...+-+..-.....-.+.++.+|+.|-...|.+..+.. .+....++..++-.
T Consensus 62 ~DvHLMv~~P~~~i---~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 62 LDVHLMVTDPQDYI---DQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV 136 (229)
T ss_pred eEEEEEecCHHHHH---HHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE
Confidence 33444445676654 456778999998887631112235678888888777888887754 45545566655432
Q ss_pred -CCCceeeecCCCCCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 256 -GVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 256 -~l~~~~iEeP~~~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.+++-+=-|++-+.-++-.+++++...+ ...+-|..|=.+. ...+..+.+.| +|+++.=
T Consensus 137 MsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aG-ad~~V~G 197 (229)
T PRK09722 137 MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAG-ADVFIVG 197 (229)
T ss_pred EEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC-CCEEEEC
Confidence 1111133455544444444444432111 2345567666654 45566666666 4766553
No 362
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=36.72 E-value=3.9e+02 Score=25.59 Aligned_cols=138 Identities=18% Similarity=0.225 Sum_probs=74.4
Q ss_pred eeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecC----------------------CChhHHHHHHHHHHHhCCCcE--
Q 014886 176 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPDSS-- 231 (416)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG----------------------~~~~~d~~~v~avr~~g~~~~-- 231 (416)
+-.|.+.|.-+.+...+.+..+.+.|...+-|-+- .+++.-++.++.+|+..++..
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~piv 91 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIV 91 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEE
Confidence 44566666666677777777777777777766652 123444566777774444443
Q ss_pred EEEeCCCC------------------------CCHHHHHHHHHHHHhCCCCceeeecCCCCCC-HH--------------
Q 014886 232 FILDANEG------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WE-------------- 272 (416)
Q Consensus 232 L~vDaN~~------------------------w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d-~~-------------- 272 (416)
||-=.|.- +..+++..+.+.++++++.+.++=.|..+++ +.
T Consensus 92 lm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs 171 (259)
T PF00290_consen 92 LMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVS 171 (259)
T ss_dssp EEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEES
T ss_pred EEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeec
Confidence 34444421 1234555666666677766556666643321 11
Q ss_pred -------------HHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 273 -------------GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 273 -------------~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+.+.-+.+|+.+++||+.|=-+.++++++.+. ..+|++.+
T Consensus 172 ~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIV 225 (259)
T PF00290_consen 172 RMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIV 225 (259)
T ss_dssp SSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEE
T ss_pred cCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEE
Confidence 122222223446677777777777777777766 33577655
No 363
>PRK10060 RNase II stability modulator; Provisional
Probab=36.69 E-value=2.5e+02 Score=30.54 Aligned_cols=108 Identities=17% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCc--eeeec--CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 014886 238 EGYKPQEAVEVLEKLYEMGVTP--VLFEQ--PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 313 (416)
Q Consensus 238 ~~w~~~~A~~~~~~L~~~~l~~--~~iEe--P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v 313 (416)
+-.+..-.-.+.+.++++++.+ ..||= ....++.+....+...++ +.|+.|++|.--.+...+..+.... +|++
T Consensus 503 ~l~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~-~~G~~ialDdfGtg~ssl~~L~~l~-~d~i 580 (663)
T PRK10060 503 QLADQTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFS-QLGAQVHLDDFGTGYSSLSQLARFP-IDAI 580 (663)
T ss_pred HhCCCcHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHH-HCCCEEEEECCCCchhhHHHHHhCC-CCEE
Confidence 3334444445556666665422 23442 222344444433333333 5799999998888888887776654 8999
Q ss_pred EeCCCCCc-hH-------HHHHHHHHHHHcCCcEEEccCCchH
Q 014886 314 NIKLAKVG-VL-------GALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 314 ~~k~~k~G-i~-------~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
.+|-+.+- +. -...+..+|+..|++++.-+- |+.
T Consensus 581 KiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGV-Et~ 622 (663)
T PRK10060 581 KLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGV-ETA 622 (663)
T ss_pred EECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecC-CCH
Confidence 99865542 21 134579999999999988653 543
No 364
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.53 E-value=3.8e+02 Score=25.44 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee------ec
Q 014886 191 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF------EQ 264 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i------Ee 264 (416)
.+.++++.+.|...+=+.-- .+++..+.++.+++.+-+.-+.+-.+. +.+....+++....+ ++++ .+
T Consensus 105 e~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gf---iy~vs~~G~TG~ 178 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGF---VYLVSRAGVTGA 178 (256)
T ss_pred HHHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCC---EEEEECCCCCCC
Confidence 34456677788888766633 335555667777776655455554444 445444454443322 1221 12
Q ss_pred --CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 265 --PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 265 --P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+..+..+-+++++ +.++.||+.|=-+.+.++++++.+.| +|++.+
T Consensus 179 ~~~~~~~~~~~i~~lr----~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVv 226 (256)
T TIGR00262 179 RNRAASALNELVKRLK----AYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIV 226 (256)
T ss_pred cccCChhHHHHHHHHH----hhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 23333344445554 46788999999999999999999877 488755
No 365
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=36.38 E-value=4.1e+02 Score=25.78 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhC-CCcEEEEe-----CCCCCC-HHHH-HHHHHHHHhCCCCc
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILD-----ANEGYK-PQEA-VEVLEKLYEMGVTP 259 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g-~~~~L~vD-----aN~~w~-~~~A-~~~~~~L~~~~l~~ 259 (416)
+...+.+..+++.||+.|.--.--.-++.+- +++++.+ +.-.|.+. .|.+++ ...| .+-+++|.---+.+
T Consensus 28 ~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG--~aI~~s~v~ReelFittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDL 105 (280)
T COG0656 28 EWAVRAVRAALELGYRLIDTAEIYGNEEEVG--EAIKESGVPREELFITTKVWPSDLGYDETLKALEASLKRLGLDYVDL 105 (280)
T ss_pred hhHHHHHHHHHHhCcceEecHhHhcCHHHHH--HHHHhcCCCHHHeEEEeecCCccCCcchHHHHHHHHHHHhCCCceeE
Confidence 3367777888889999987332211122222 3555542 33344444 234443 2222 22344443211234
Q ss_pred eeeecCCCC------CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC--CCEEEeCCCCCchHHHHHHHHH
Q 014886 260 VLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL--ADVINIKLAKVGVLGALEIIEV 331 (416)
Q Consensus 260 ~~iEeP~~~------~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a--~d~v~~k~~k~Gi~~~l~i~~~ 331 (416)
+.|=.|.+. +-+..+.++. ..|.-=+.|=|-++.+++.++++... ..+-|+...- ...-.++..+
T Consensus 106 yLiHwP~~~~~~~~~etw~alE~l~-----~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp--~~~q~el~~~ 178 (280)
T COG0656 106 YLIHWPVPNKYVVIEETWKALEELV-----DEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHP--YLRQPELLPF 178 (280)
T ss_pred EEECCCCCccCccHHHHHHHHHHHH-----hcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEecc--CCCcHHHHHH
Confidence 677888763 3344444443 34555567889999999999997633 4455665443 2233448999
Q ss_pred HHHcCCcEEEccCCc
Q 014886 332 VRASGLNLMIGGMVE 346 (416)
Q Consensus 332 A~~~gi~~~~~~~~e 346 (416)
|+++||.+...+.++
T Consensus 179 ~~~~gI~v~AysPL~ 193 (280)
T COG0656 179 CQRHGIAVEAYSPLA 193 (280)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999999887765
No 366
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=36.33 E-value=2.7e+02 Score=27.35 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCCEEEEecCC-------------ChhHHHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 192 ELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG~-------------~~~~d~~~v~avr~~g~-~~~L~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
+.++++.+.|...+-|.+.. +.+.-++.++++++.+- .+++..=...+.+.++..++++.+.+.++
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 34566677888888777741 23445555666666642 45553323445677888888888888888
Q ss_pred CceeeecCCC
Q 014886 258 TPVLFEQPVH 267 (416)
Q Consensus 258 ~~~~iEeP~~ 267 (416)
.+.++| .+|
T Consensus 185 ~~~~ie-~mP 193 (329)
T PRK13361 185 DIAFIE-EMP 193 (329)
T ss_pred eEEEEe-ccc
Confidence 655555 444
No 367
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.22 E-value=3.7e+02 Score=25.92 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhCC-----CCceeeecCCC-CCCHHHHHHhHHhhhccC-CCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 014886 240 YKPQEAVEVLEKLYEMG-----VTPVLFEQPVH-RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADV 312 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~-----l~~~~iEeP~~-~~d~~~~~~l~~~~r~~~-~iPIa~dEs~~~~~d~~~~i~~~a~d~ 312 (416)
|+.++=+++++.|.+.| +. .||=|-. ..|.+..+++.. +.. ...|..= ...+..++.+.++.| ++.
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~--~IE~~s~~~~d~~~v~~~~~---~~~~~~~v~~~-~r~~~~die~A~~~g-~~~ 90 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIR--QTEFFLYTEKDREAVEACLD---RGYKFPEVTGW-IRANKEDLKLVKEMG-LKE 90 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccc--eEEecCcChHHHHHHHHHHH---cCCCCCEEEEE-ecCCHHHHHHHHHcC-cCE
Confidence 47777789999999999 85 8997632 223444444332 221 1234443 677889999999886 465
Q ss_pred EEeCCC--------CCc------hHHHHHHHHHHHHcCCcEEEcc
Q 014886 313 INIKLA--------KVG------VLGALEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 313 v~~k~~--------k~G------i~~~l~i~~~A~~~gi~~~~~~ 343 (416)
+.+=.+ +.| +....+++.+|+++|+.+..+-
T Consensus 91 v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 91 TGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 543211 112 2235568999999999876544
No 368
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=36.13 E-value=3.8e+02 Score=25.34 Aligned_cols=149 Identities=9% Similarity=0.091 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCEEEEe-cC---CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHhCCCCceeeec
Q 014886 190 AAELASKYRKQGFTTLKLK-VG---KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 264 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiK-vG---~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~-L~~~~l~~~~iEe 264 (416)
..+.++.+.++|++.+-+- +. ..-..+.+.++.+.+. .++.+.++. +-.+.+++.+++.. .+..-+.-..+|+
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 3556777888998777532 32 1224577788888775 356777777 55567777666532 1111111123455
Q ss_pred CCCCCCHHHHHHhHHhhhccCCCeEEeC------------------CCCCCHHHHHHHH-HcCCCCEEEeCCCCCc-hH-
Q 014886 265 PVHRDDWEGLGHVSHIAKDKFGVSVAAD------------------ESCRSLDDVKKIV-KGNLADVINIKLAKVG-VL- 323 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~~iPIa~d------------------Es~~~~~d~~~~i-~~~a~d~v~~k~~k~G-i~- 323 (416)
| +-+.++.+... ...++++.| .+-.++.++.+.+ +.|+-.++.-+..+.| ..
T Consensus 110 ~------~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G 182 (258)
T PRK01033 110 P------DLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG 182 (258)
T ss_pred H------HHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC
Confidence 4 33444443221 123566665 1233455654544 5565556666677765 32
Q ss_pred -HHHHHHHHHHHcCCcEEEccCCch
Q 014886 324 -GALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 324 -~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
..-.+.++++..+++++.++-+.+
T Consensus 183 ~d~~~i~~~~~~~~ipvIasGGv~s 207 (258)
T PRK01033 183 YDLELLKSFRNALKIPLIALGGAGS 207 (258)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCCC
Confidence 233446677778999988776543
No 369
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=35.81 E-value=4.9e+02 Score=26.64 Aligned_cols=142 Identities=13% Similarity=0.259 Sum_probs=72.1
Q ss_pred CcHHHHhCCCCceeeeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 014886 163 MPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 242 (416)
Q Consensus 163 ~pl~~LLGg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~ 242 (416)
+|+|+.+..... .+-..+++++.+.+++-.++|...+-|+.|- ..+.++.+++.+-=..+ |==-+++
T Consensus 121 VPiYqa~~~~~~------~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi----~~~~~~~~~~~~R~~gi-VSRGGs~-- 187 (423)
T TIGR00190 121 VPIYQAAEKVHG------AVEDMDEDDMFRAIEKQAKDGVDFMTIHAGV----LLEYVERLKRSGRITGI-VSRGGAI-- 187 (423)
T ss_pred ccHHHHHHHhcC------ChhhCCHHHHHHHHHHHHHhCCCEEEEccch----hHHHHHHHHhCCCccCe-ecCcHHH--
Confidence 566666542211 2223578889999999899999999999984 23344445442100001 0000111
Q ss_pred HHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC-CEEEeCCCCCc
Q 014886 243 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA-DVINIKLAKVG 321 (416)
Q Consensus 243 ~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~-d~v~~k~~k~G 321 (416)
++.++...+ =|-|+-. +++.+-++.+ +.++-+.+|..+. .|+. |. -|-.++-
T Consensus 188 -----~~~WM~~~~-----~ENPlye-~fD~lLeI~~----~yDVtlSLGDglR----------PG~i~DA--~D~aQi~ 240 (423)
T TIGR00190 188 -----LAAWMLHHH-----KENPLYK-NFDYILEIAK----EYDVTLSLGDGLR----------PGCIADA--TDRAQIS 240 (423)
T ss_pred -----HHHHHHHcC-----CcCchHH-HHHHHHHHHH----HhCeeeeccCCcC----------CCccccC--CcHHHHH
Confidence 122333333 2667743 3554555543 6788888877643 1110 00 0111111
Q ss_pred -hHHHHHHHHHHHHcCCcEEEccC
Q 014886 322 -VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 322 -i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+.-.-+++..|+++|+++|+-+.
T Consensus 241 El~~lgeL~~rA~e~gVQvMVEGP 264 (423)
T TIGR00190 241 ELITLGELVERAREADVQCMVEGP 264 (423)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECC
Confidence 22233566777778888876443
No 370
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=35.72 E-value=3.8e+02 Score=25.25 Aligned_cols=73 Identities=23% Similarity=0.212 Sum_probs=49.8
Q ss_pred ChhHHHHHHHHHHHhCCCcEEEEeCCCCC--CHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeE
Q 014886 212 NLKEDIEVLRAIRAVHPDSSFILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 289 (416)
Q Consensus 212 ~~~~d~~~v~avr~~g~~~~L~vDaN~~w--~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPI 289 (416)
++++=+..+++|++..+...+.+|.-.++ +++++.+.++++.+.|..-.-||+=. +-.+-++.++ ..++||
T Consensus 56 tl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~-----~a~i~V 128 (240)
T cd06556 56 PVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLT-----AAAVPV 128 (240)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHH-----HcCCeE
Confidence 34566677888888767778999997765 45899999999998887556788831 1122233333 235888
Q ss_pred Ee
Q 014886 290 AA 291 (416)
Q Consensus 290 a~ 291 (416)
.+
T Consensus 129 ia 130 (240)
T cd06556 129 IA 130 (240)
T ss_pred EE
Confidence 75
No 371
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=35.61 E-value=1.4e+02 Score=28.58 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=65.0
Q ss_pred HHHHHHhCCCC-c-eeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHH
Q 014886 248 VLEKLYEMGVT-P-VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA 325 (416)
Q Consensus 248 ~~~~L~~~~l~-~-~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~ 325 (416)
+++..+++|.. + ..-|++.-...++.++.+++ ...+||-.-+-+.++.++...-..| .|.+.+=+.-++-.+.
T Consensus 71 ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~----~v~~PvL~KDFiiD~yQI~~Ar~~G-ADavLLI~~~L~~~~l 145 (254)
T COG0134 71 IAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRA----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALDDEQL 145 (254)
T ss_pred HHHHHHHhCCeEEEEecCccccCCCHHHHHHHHH----hcCCCeeeccCCCCHHHHHHHHHcC-cccHHHHHHhcCHHHH
Confidence 55555665421 1 24455655667777877754 7899999999999999998888777 4887664444443457
Q ss_pred HHHHHHHHHcCCcEEEcc
Q 014886 326 LEIIEVVRASGLNLMIGG 343 (416)
Q Consensus 326 l~i~~~A~~~gi~~~~~~ 343 (416)
..+.+.|+++|+.+.+-.
T Consensus 146 ~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 146 EELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHcCCeeEEEE
Confidence 789999999999986543
No 372
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=35.00 E-value=4.8e+02 Score=26.19 Aligned_cols=120 Identities=16% Similarity=0.208 Sum_probs=75.1
Q ss_pred EeCCCCCCHHHHHHHHHHHHhCCCCc---------eeeecCCCCCCH----------------HHHHHhHHhh--hccCC
Q 014886 234 LDANEGYKPQEAVEVLEKLYEMGVTP---------VLFEQPVHRDDW----------------EGLGHVSHIA--KDKFG 286 (416)
Q Consensus 234 vDaN~~w~~~~A~~~~~~L~~~~l~~---------~~iEeP~~~~d~----------------~~~~~l~~~~--r~~~~ 286 (416)
+=...--+.++|++++++|.+.+-.. .|+|-|=..-.| +|++.+++.+ ....+
T Consensus 58 vGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~G 137 (356)
T PRK12822 58 IGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTLG 137 (356)
T ss_pred EcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHhC
Confidence 34445557999999999998753321 378888653223 3444443320 24689
Q ss_pred CeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc--hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccCCC
Q 014886 287 VSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 363 (416)
Q Consensus 287 iPIa~dEs~-~~~~d~~~~i~~~a~d~v~~k~~k~G--i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~~~ 363 (416)
+|++..=.- .+++-+.+++.-+ .+| -++..-...+|-..++++-+-..+...+..+..+-.+++.|.
T Consensus 138 lPvatE~ld~~~~qy~~Dlisw~----------aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~~pH 207 (356)
T PRK12822 138 LATATEFLDTTSFPYIADLICWG----------AIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAARSPH 207 (356)
T ss_pred CCEEEeecccccHHHHHHHHHhh----------hhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHcCCC
Confidence 999975221 2232233333211 235 345555677788999999988877888888888888887665
No 373
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=34.75 E-value=3.6e+02 Score=24.67 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=40.7
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCC
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi 337 (416)
.+++.++++++ .+++||..+=-+.+.+|++++++.| +|.+.+.-... ...-.+.++++.++-
T Consensus 61 ~~~~~i~~i~~----~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg~~~l--~~~~~l~ei~~~~~~ 122 (233)
T PRK00748 61 VNLELIEAIVK----AVDIPVQVGGGIRSLETVEALLDAG-VSRVIIGTAAV--KNPELVKEACKKFPG 122 (233)
T ss_pred ccHHHHHHHHH----HCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEECchHH--hCHHHHHHHHHHhCC
Confidence 45666777654 5789999999999999999999987 57765533321 222234455555433
No 374
>PF12040 DUF3526: Domain of unknown function (DUF3526); InterPro: IPR021913 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.
Probab=34.64 E-value=86 Score=27.34 Aligned_cols=48 Identities=23% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHH
Q 014886 218 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 276 (416)
Q Consensus 218 ~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~ 276 (416)
+.+.++|+.. |.|..|+.....-.-+-|+.+++. |+|+ +|. ++.++..
T Consensus 4 e~~~~~r~~~-------d~h~~~d~~~~~~~~~~l~~ypv~--~~~~-lp~-~f~~~~~ 51 (156)
T PF12040_consen 4 EFDLAQREAL-------DGHNPWDPPFAALKDAFLAQYPVD--WVED-LPV-NFRGLWY 51 (156)
T ss_pred HHHHHHHHHh-------ccCCccchhHHHHHHHHHHHCCcc--cccc-CCc-cHHHHHH
Confidence 4455666643 999999988877778889999974 9999 655 5666544
No 375
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=34.63 E-value=3e+02 Score=26.95 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHHcCCCEEEEecC--------------CChhHHHHHHHHHHHhCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 193 LASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAVHPD-SSFILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG--------------~~~~~d~~~v~avr~~g~~-~~L~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
.++.+.+.|...+.|.+. .+.++-++.++.+++.+-. +.+.+-.-.+.+.++..++++.+.+.++
T Consensus 104 ~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 104 HAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGV 183 (334)
T ss_pred HHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 445566677777766653 1334555666667776533 5554444455677888888888888887
Q ss_pred Cceeeec
Q 014886 258 TPVLFEQ 264 (416)
Q Consensus 258 ~~~~iEe 264 (416)
.+.++|-
T Consensus 184 ~~~~ie~ 190 (334)
T TIGR02666 184 TLRFIEL 190 (334)
T ss_pred eEEEEec
Confidence 6667664
No 376
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=34.56 E-value=4.8e+02 Score=26.06 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=75.6
Q ss_pred HHHHHHHHcC-----------CCEEEEecC-CChhHHHHHHHHHHHh-C-CCc----EE----------E---EeCCCCC
Q 014886 192 ELASKYRKQG-----------FTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SF----------I---LDANEGY 240 (416)
Q Consensus 192 ~~~~~~~~~G-----------~~~~KiKvG-~~~~~d~~~v~avr~~-g-~~~----~L----------~---vDaN~~w 240 (416)
+.+.++++.| |+.+-+... .++++.+++.+.+.+. . -++ .| . .|.+..+
T Consensus 101 e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~y 180 (340)
T cd00453 101 PWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALY 180 (340)
T ss_pred HHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccC
Confidence 5567788899 999988877 5778888888777642 1 111 11 1 1122336
Q ss_pred C-HHHHHHHHHHHH--------------hCCCCceeee-cCCCCCCHHHHHHhHHhhhcc-----CCCeEE-eCCCCCCH
Q 014886 241 K-PQEAVEVLEKLY--------------EMGVTPVLFE-QPVHRDDWEGLGHVSHIAKDK-----FGVSVA-ADESCRSL 298 (416)
Q Consensus 241 ~-~~~A~~~~~~L~--------------~~~l~~~~iE-eP~~~~d~~~~~~l~~~~r~~-----~~iPIa-~dEs~~~~ 298 (416)
| +++|.+|.++.. -.|+ |-. +| .-|++-++++++....+ .++|+. .|=|-...
T Consensus 181 T~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~---Yk~g~p--~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~ 255 (340)
T cd00453 181 TQPEDVDYAYTELSKISPRFTIAASFGNVHGV---YKKGNV--VLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTA 255 (340)
T ss_pred CCHHHHHHHHHHhCCCCcceEEeeecCccccC---CCCCCC--ccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCH
Confidence 4 999999999876 1232 333 34 34677788877532111 167777 45666777
Q ss_pred HHHHHHHHcCCCCEEEeCC
Q 014886 299 DDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 299 ~d~~~~i~~~a~d~v~~k~ 317 (416)
++++++++.|. .=+|++.
T Consensus 256 e~~~~ai~~Gi-~KiNi~T 273 (340)
T cd00453 256 QEIKDSVSYGV-VKMNIDT 273 (340)
T ss_pred HHHHHHHHcCC-eEEEccc
Confidence 88999998874 3345543
No 377
>PRK07360 FO synthase subunit 2; Reviewed
Probab=34.47 E-value=3.1e+02 Score=27.51 Aligned_cols=107 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCceee---ecCCCCCCHHHHHHhHHhhhcc-CCCeEEe-----------CCCCCCHHHHHHH
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLF---EQPVHRDDWEGLGHVSHIAKDK-FGVSVAA-----------DESCRSLDDVKKI 304 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~i---EeP~~~~d~~~~~~l~~~~r~~-~~iPIa~-----------dEs~~~~~d~~~~ 304 (416)
.+.++.++.++...+.|+.-..+ +.|-.. +++.+.++-+.+++. .++.|.+ .--..+.+.++++
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~-~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l~~L 169 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAAD-SLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEEVLKAL 169 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCC-cHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHHHHHHH
Q ss_pred HHcCCCCEEE--------------eCCCCCchHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 305 VKGNLADVIN--------------IKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 305 i~~~a~d~v~--------------~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
.++| +|.+. +.+.++-..+++++++.|++.|+++..+.+++.+
T Consensus 170 keAG-ld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~g 226 (371)
T PRK07360 170 KDAG-LDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHV 226 (371)
T ss_pred HHcC-CCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCC
No 378
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=33.89 E-value=3.1e+02 Score=25.93 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=37.5
Q ss_pred hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccC
Q 014886 281 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 281 ~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
++...++||+.|= +++.-++..++.+ .+++|= ++ |...--+++.+++++|.+++.-++
T Consensus 71 l~~~~~~piSIDT--~~~~v~~aaL~~g-~~iINd-is--~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 71 LAGEPDVPISVDT--FNAEVAEAALKAG-ADIIND-VS--GGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred HHhcCCCeEEEeC--CcHHHHHHHHHhC-CCEEEe-CC--CCCCChHHHHHHHHcCCCEEEECc
Confidence 3345589998873 4555677788877 677753 22 211114567888999999876554
No 379
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=33.80 E-value=4.6e+02 Score=25.63 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC--CCh-----hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG--KNL-----KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG--~~~-----~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
++++..+.++.+.+.|++.+=|--+ .+. +.=.+.|++|++..|++.+.+=...-....++ ++.+.+.+..
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~---l~~l~~aG~d 168 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAA---LDILLDAPPD 168 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHH---HHHHHHcCch
Confidence 5788888889889999998855432 122 22355677888777777766633211112223 3333332211
Q ss_pred c--eeee-------cCCCCCCHHH----HHHhHHh---hhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe----CCC
Q 014886 259 P--VLFE-------QPVHRDDWEG----LGHVSHI---AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI----KLA 318 (416)
Q Consensus 259 ~--~~iE-------eP~~~~d~~~----~~~l~~~---~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~----k~~ 318 (416)
. ..+| .=-+..+++. ++.+++. +.-.+++-+-.||+.....+..+.++.-.+|.+.+ .++
T Consensus 169 v~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~ 248 (302)
T TIGR00510 169 VYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPS 248 (302)
T ss_pred hhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCC
Confidence 0 0122 1111223332 2222221 11145666667888777776666665555666542 222
Q ss_pred C----Cc--h--HHHHHHHHHHHHcCCcEEEccC
Q 014886 319 K----VG--V--LGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 319 k----~G--i--~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
+ +- + .+.-....+|.+.|...+.++.
T Consensus 249 ~~~~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p 282 (302)
T TIGR00510 249 RRHLPVKRYVSPEEFDYYRSVALEMGFLHAACGP 282 (302)
T ss_pred CCCCccccCCCHHHHHHHHHHHHHcCChheEecc
Confidence 2 11 2 2345567778888887666553
No 380
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=33.65 E-value=3.9e+02 Score=24.74 Aligned_cols=130 Identities=15% Similarity=0.271 Sum_probs=77.7
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHH-HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDI-EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~-~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~ 255 (416)
+....+-..+|+... +.+.+.|-..+-+++-.. .+. +.++.+|+.|-...+.+..+. ..+....+++.++-.
T Consensus 60 ~~dvHLMv~~p~~~i---~~~~~~gad~i~~H~Ea~--~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~v 132 (220)
T PRK08883 60 PIDVHLMVKPVDRII---PDFAKAGASMITFHVEAS--EHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLI 132 (220)
T ss_pred CEEEEeccCCHHHHH---HHHHHhCCCEEEEcccCc--ccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeE
Confidence 334444445676654 456778999998887631 233 457788887766677776664 455555566655431
Q ss_pred ---CCCceeeecCCCCCCHHHHHHhHHhhh-ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 256 ---GVTPVLFEQPVHRDDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 256 ---~l~~~~iEeP~~~~d~~~~~~l~~~~r-~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+++-+=-|.+-+..++.++++++... +..++||..|=.+. .+.+..+.+.| +|++.+
T Consensus 133 lvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG-Ad~vVv 194 (220)
T PRK08883 133 LLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG-ADMFVA 194 (220)
T ss_pred EEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC-CCEEEE
Confidence 111112344444444555666654221 12358898877766 77888888888 577755
No 381
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=33.50 E-value=1.9e+02 Score=23.16 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhCCCcEEE--EeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCC
Q 014886 216 DIEVLRAIRAVHPDSSFI--LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 293 (416)
Q Consensus 216 d~~~v~avr~~g~~~~L~--vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dE 293 (416)
-...+.++++..++.++. +|-+ .+.+.++ .+.+++. .+ .+++.+-.- ...++-+....
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~----~~~~~~~---~~~~~~~--~~------~~~~~ll~~-----~~~D~V~I~tp 71 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPD----PERAEAF---AEKYGIP--VY------TDLEELLAD-----EDVDAVIIATP 71 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSS----HHHHHHH---HHHTTSE--EE------SSHHHHHHH-----TTESEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCC----HHHHHHH---HHHhccc--ch------hHHHHHHHh-----hcCCEEEEecC
Confidence 334466666665665543 4554 3444333 3455542 22 234333221 23455555555
Q ss_pred CCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEc
Q 014886 294 SCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 294 s~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~ 342 (416)
+-...+-+..+++.|. +++.=||.-....++.++.++|+++|..++++
T Consensus 72 ~~~h~~~~~~~l~~g~-~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 72 PSSHAEIAKKALEAGK-HVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp GGGHHHHHHHHHHTTS-EEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CcchHHHHHHHHHcCC-EEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 5556667788888884 99988888766889999999999999999875
No 382
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=33.47 E-value=4.5e+02 Score=25.34 Aligned_cols=43 Identities=7% Similarity=0.069 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh
Q 014886 212 NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 212 ~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~ 254 (416)
+++.=.+.++++.+.|.+.--..|..+..++.+..++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 3444455566666667665556799999999999999998865
No 383
>PRK00915 2-isopropylmalate synthase; Validated
Probab=33.36 E-value=6e+02 Score=26.83 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred eCCCCC----CHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHH----H
Q 014886 235 DANEGY----KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIV----K 306 (416)
Q Consensus 235 DaN~~w----~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i----~ 306 (416)
|.+|+. +.++-+++++.|.+.|+. +||==+|.-.......+++......+..|+.==... ..|+...+ +
T Consensus 14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~-~~did~a~~a~~~ 90 (513)
T PRK00915 14 DGEQSPGASLTVEEKLQIAKQLERLGVD--VIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAV-KKDIDAAAEALKP 90 (513)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCC-HHHHHHHHHHhhc
Q ss_pred cCCCCEEEeCCC-------CCc--hHHHH----HHHHHHHHcCCcEEEccCCchHHHHHHHHHHH
Q 014886 307 GNLADVINIKLA-------KVG--VLGAL----EIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 307 ~~a~d~v~~k~~-------k~G--i~~~l----~i~~~A~~~gi~~~~~~~~es~ig~~a~~hla 358 (416)
.+...+-..-.. ++| ..+.+ +.+.+|+++|..+..+++..+.........++
T Consensus 91 ~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~ 155 (513)
T PRK00915 91 AEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVV 155 (513)
T ss_pred CCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHH
No 384
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=33.36 E-value=4.9e+02 Score=25.78 Aligned_cols=115 Identities=17% Similarity=0.251 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCC--CEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee----
Q 014886 191 AELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 263 (416)
Q Consensus 191 ~~~~~~~~~~G~--~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE---- 263 (416)
.+.+..+++.|. ..+=+... ..-+.-++.|+.+|+..|...+ +-.|-. +.+.|.++ .+.+.....+-
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~v-i~GnV~-t~e~a~~l----~~aGad~I~V~~G~G 169 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFV-IAGNVG-TPEAVREL----ENAGADATKVGIGPG 169 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEE-EEecCC-CHHHHHHH----HHcCcCEEEECCCCC
Confidence 466677788884 55555553 2335566778888887766433 344432 67666554 34443211111
Q ss_pred ----------cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 264 ----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 264 ----------eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
..++...+..+.++++ ...+||.+|--+.+-.|+.+++..| +|.+++-
T Consensus 170 ~~~~tr~~~g~g~~~~~l~ai~ev~~----a~~~pVIadGGIr~~~Di~KALa~G-Ad~Vmig 227 (321)
T TIGR01306 170 KVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ASMVMIG 227 (321)
T ss_pred ccccceeeeccCCCchHHHHHHHHHH----hcCCeEEEECCcCcHHHHHHHHHcC-CCEEeec
Confidence 1121123334555543 4579999999999999999999987 4887663
No 385
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=33.31 E-value=2.5e+02 Score=28.36 Aligned_cols=126 Identities=21% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChh----HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCce
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLK----EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 260 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~----~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~ 260 (416)
.+++++.++++++.+.|.+-+=|--|.+++ --.+.++.+++.+|++.+. +++..+...+ . .
T Consensus 90 Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~-----a~s~~ei~~~-~---~------ 154 (370)
T COG1060 90 LSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIH-----ALSAGEILFL-A---R------ 154 (370)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhc-----ccCHHHhHHH-H---h------
Confidence 478999999999999999999999885443 3455677888877765443 3444432111 1 1
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEE
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~ 340 (416)
+....--+.+++|... .--.+|...-|-+. +.+++.+. +.|+....++++.+.|.+.||+..
T Consensus 155 ----~~~~s~~E~l~~Lk~a--Gldsmpg~~aeil~--e~vr~~~~----------p~K~~~~~wle~~~~Ah~lGI~~t 216 (370)
T COG1060 155 ----EGGLSYEEVLKRLKEA--GLDSMPGGGAEILS--EEVRKIHC----------PPKKSPEEWLEIHERAHRLGIPTT 216 (370)
T ss_pred ----ccCCCHHHHHHHHHHc--CCCcCcCcceeech--HHHHHhhC----------CCCCCHHHHHHHHHHHHHcCCCcc
Confidence 1111111235555431 12236665554432 23443332 334446789999999999999965
Q ss_pred Ecc
Q 014886 341 IGG 343 (416)
Q Consensus 341 ~~~ 343 (416)
-..
T Consensus 217 atm 219 (370)
T COG1060 217 ATM 219 (370)
T ss_pred cee
Confidence 433
No 386
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.28 E-value=2.1e+02 Score=26.33 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=43.0
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCC
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi 337 (416)
+++-.+++++ ..++|+..+=.+.+++++.++++.| +|.+.+.-.. +...-.+.++++++|.
T Consensus 61 ~~~~i~~i~~----~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~--l~dp~~~~~i~~~~g~ 121 (234)
T cd04732 61 NLELIEEIVK----AVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAA--VKNPELVKELLKEYGG 121 (234)
T ss_pred CHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchH--HhChHHHHHHHHHcCC
Confidence 4555666653 5689999999999999999999988 7887653332 2233345666777765
No 387
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=33.16 E-value=4.6e+02 Score=25.37 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCC-CeEEeCCC---CCCHHHHHHHHHcCCCCEEE
Q 014886 239 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADES---CRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 239 ~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~-iPIa~dEs---~~~~~d~~~~i~~~a~d~v~ 314 (416)
+++++...++++.+.+.|.....|-+-+-.-......++.+.++++.+ +||...=. -.........++.| ++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG-~~~id 229 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEG-ITVFD 229 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhC-CCEEE
Confidence 456666666666666666543445555444344444444333333333 45543111 01112234455666 57665
Q ss_pred eCCC
Q 014886 315 IKLA 318 (416)
Q Consensus 315 ~k~~ 318 (416)
.-+.
T Consensus 230 ~s~~ 233 (287)
T PRK05692 230 ASVG 233 (287)
T ss_pred EEcc
Confidence 5444
No 388
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=32.94 E-value=1.6e+02 Score=27.06 Aligned_cols=78 Identities=15% Similarity=0.311 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC
Q 014886 189 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (416)
Q Consensus 189 ~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (416)
++.+.++++.+.|++.|-+. |...++.+++.+|+.++.+|..-.-.-.+++++++. .|+.-.++-.=+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~-------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~---~G~~~i~ls~EL-- 70 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVS-------NPGLLELLKELGPDLKIIADYSLNVFNSESARFLKE---LGASRITLSPEL-- 70 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEc-------CHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHH---cCCCEEEECccC--
Confidence 34555666777888886654 678888999999999999999865443344455443 344322332222
Q ss_pred CCHHHHHHhHH
Q 014886 269 DDWEGLGHVSH 279 (416)
Q Consensus 269 ~d~~~~~~l~~ 279 (416)
+++.++++.+
T Consensus 71 -~~~ei~~i~~ 80 (233)
T PF01136_consen 71 -SLEEIKEIAE 80 (233)
T ss_pred -CHHHHHHHHH
Confidence 3455555553
No 389
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=32.79 E-value=3.8e+02 Score=26.48 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=26.7
Q ss_pred ChhHHHHHHHHHHHhC-CCcEEEEeC-CCCCCHHHHHHHHHHHHhC
Q 014886 212 NLKEDIEVLRAIRAVH-PDSSFILDA-NEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 212 ~~~~d~~~v~avr~~g-~~~~L~vDa-N~~w~~~~A~~~~~~L~~~ 255 (416)
++++-++.++.+.+.| ..+.|. +. +-.++.+...++++.+.+.
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~-gG~~p~~~~~~~~~i~~~Ik~~ 115 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQ-GGIHPDLDGDFYLDILRAVKEE 115 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEE-eCCCCCCCHHHHHHHHHHHHHH
Confidence 4566666666666654 334444 44 3345777778888888765
No 390
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=32.79 E-value=1.5e+02 Score=28.01 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=44.3
Q ss_pred ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEc
Q 014886 283 DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 283 ~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~ 342 (416)
+..-||+..+=-+.+.+|+++++..|+ |=+.+.-.- +...--+.+.|+.+|.+|++-
T Consensus 71 ~~vfiPltVGGGI~s~eD~~~ll~aGA-DKVSINsaA--v~~p~lI~~~a~~FGsQciVv 127 (256)
T COG0107 71 EQVFIPLTVGGGIRSVEDARKLLRAGA-DKVSINSAA--VKDPELITEAADRFGSQCIVV 127 (256)
T ss_pred hhceeeeEecCCcCCHHHHHHHHHcCC-CeeeeChhH--hcChHHHHHHHHHhCCceEEE
Confidence 367899999999999999999999985 766664332 333345788899999998763
No 391
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=32.62 E-value=3.7e+02 Score=25.51 Aligned_cols=93 Identities=22% Similarity=0.358 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeec------C----CCCC-CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcC
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQ------P----VHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 308 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEe------P----~~~~-d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~ 308 (416)
.+++++++.++.+.+.|.. +|.= | ++.+ +++.+..+-+.++...++||+.|= +++.-++..++.|
T Consensus 20 ~~~~~~~~~a~~~~~~GA~--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT--~~~~vi~~al~~G 95 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGAD--IIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT--YRAEVARAALEAG 95 (257)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCHHHHHHHHHcC
Confidence 4566676666666555543 4432 1 1111 222233333334445689999973 4566778888886
Q ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEE
Q 014886 309 LADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 309 a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~ 341 (416)
++++|= ++ |.. .-++..+++++|.+++.
T Consensus 96 -~~iINs-is--~~~-~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 96 -ADIIND-VS--GGQ-DPAMLEVAAEYGVPLVL 123 (257)
T ss_pred -CCEEEE-CC--CCC-CchhHHHHHHcCCcEEE
Confidence 688763 11 221 23466778899999876
No 392
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=32.00 E-value=4.2e+02 Score=24.62 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCCEEEEecC--CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCc------eee
Q 014886 191 AELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP------VLF 262 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG--~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~------~~i 262 (416)
.++++++.+.|-..+-+... ..+..+++.+-.- ...++.-+|.|.. ++++++.- .. .|+.+ -|-
T Consensus 88 lkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~-~k~~~~l~MAD~S---t~ee~l~a-~~---~G~D~IGTTLsGYT 159 (229)
T COG3010 88 LKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR-IKYPGQLAMADCS---TFEEGLNA-HK---LGFDIIGTTLSGYT 159 (229)
T ss_pred HHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH-hhcCCcEEEeccC---CHHHHHHH-HH---cCCcEEeccccccc
Confidence 45566777899999888876 2233355543222 3378899999986 35665432 22 22210 133
Q ss_pred e---cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 E---QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 E---eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+ .|..+ |++-+++|. +.+.++.+--..+++...++.++.|+ +.+.+
T Consensus 160 ~~~~~~~~p-Df~lvk~l~-----~~~~~vIAEGr~~tP~~Ak~a~~~Ga-~aVvV 208 (229)
T COG3010 160 GYTEKPTEP-DFQLVKQLS-----DAGCRVIAEGRYNTPEQAKKAIEIGA-DAVVV 208 (229)
T ss_pred CCCCCCCCC-cHHHHHHHH-----hCCCeEEeeCCCCCHHHHHHHHHhCC-eEEEE
Confidence 3 33333 577777775 46899999889999999999999996 44433
No 393
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=31.76 E-value=2.8e+02 Score=27.66 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCC-c-eeeecCCCCCCHHHHHHhHHhhhcc-CCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchH
Q 014886 247 EVLEKLYEMGVT-P-VLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 323 (416)
Q Consensus 247 ~~~~~L~~~~l~-~-~~iEeP~~~~d~~~~~~l~~~~r~~-~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~ 323 (416)
++++..+..|.. + ..=|+.+-...++.++++++ . ..+||---+-+.++.++.+.-..| +|.+.+=+.-++-.
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~----~~v~lPvLrKDFIID~yQI~eAr~~G-ADAVLLIaaiL~~~ 217 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRN----AGVKCPLLCKEFIVDAWQIYYARSKG-ADAILLIAAVLPDL 217 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHH----cCCCCCEeeccccCCHHHHHHHHHcC-CCcHHHHHHhCCHH
Confidence 445555655421 0 24466666667887887763 4 789999999999999999888888 48877655544433
Q ss_pred HHHHHHHHHHHcCCcEEEccC
Q 014886 324 GALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 324 ~~l~i~~~A~~~gi~~~~~~~ 344 (416)
....+..+|+..|+.+.+-..
T Consensus 218 ~L~~l~~~A~~LGme~LVEVH 238 (338)
T PLN02460 218 DIKYMLKICKSLGMAALIEVH 238 (338)
T ss_pred HHHHHHHHHHHcCCeEEEEeC
Confidence 567889999999999876443
No 394
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=31.57 E-value=4e+02 Score=25.11 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=30.5
Q ss_pred EeCCCCCchH----HHHHHHHHHHHcCCcE------EEccCCchHHHHHHHHHHH
Q 014886 314 NIKLAKVGVL----GALEIIEVVRASGLNL------MIGGMVETRLAMGFAGHLS 358 (416)
Q Consensus 314 ~~k~~k~Gi~----~~l~i~~~A~~~gi~~------~~~~~~es~ig~~a~~hla 358 (416)
..|--.|-+. +.+.+...|+++++++ .+||.+|+.+....-+.+.
T Consensus 121 slkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~ 175 (316)
T KOG2368|consen 121 SLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVV 175 (316)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHH
Confidence 3444444433 4567889999999984 6888888887766655443
No 395
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=31.54 E-value=2e+02 Score=28.94 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=51.1
Q ss_pred CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCC--CC---CchHHHHHHHHHHHH--cCCcEEE
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL--AK---VGVLGALEIIEVVRA--SGLNLMI 341 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~--~k---~Gi~~~l~i~~~A~~--~gi~~~~ 341 (416)
..|+.++++++ .+++||..=|- .+.+|+..+.+.| +|++.+-- ++ .|+.....+.++.++ ..++++.
T Consensus 212 ~~w~~i~~~~~----~~~~pvivKgv-~~~~da~~~~~~G-~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~ 285 (356)
T PF01070_consen 212 LTWDDIEWIRK----QWKLPVIVKGV-LSPEDAKRAVDAG-VDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIA 285 (356)
T ss_dssp -SHHHHHHHHH----HCSSEEEEEEE--SHHHHHHHHHTT--SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHhc----ccCCceEEEec-ccHHHHHHHHhcC-CCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEE
Confidence 35677777764 78999999888 8899999999988 57764431 11 132223333444443 4599999
Q ss_pred ccCCchHHHHHHHHHHHc
Q 014886 342 GGMVETRLAMGFAGHLSA 359 (416)
Q Consensus 342 ~~~~es~ig~~a~~hlaa 359 (416)
.+-+.++.=..-++.|.|
T Consensus 286 dgGir~g~Dv~kalaLGA 303 (356)
T PF01070_consen 286 DGGIRRGLDVAKALALGA 303 (356)
T ss_dssp ESS--SHHHHHHHHHTT-
T ss_pred eCCCCCHHHHHHHHHcCC
Confidence 887776655555444443
No 396
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=31.46 E-value=5.4e+02 Score=25.72 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcC--CCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee---
Q 014886 190 AAELASKYRKQG--FTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--- 263 (416)
Q Consensus 190 ~~~~~~~~~~~G--~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE--- 263 (416)
-.+.++.+++.| ...+=|.+. ..-+.-++.|+.+|+.+|+..++ +-.--|++.|.++++ .+....++=
T Consensus 108 d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi--aGNV~T~e~a~~Li~----aGAD~ikVgiGp 181 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIM--AGNVVTGEMVEELIL----SGADIVKVGIGP 181 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE--EecccCHHHHHHHHH----cCCCEEEEcccC
Confidence 346677777774 888888886 34456677888899988875554 233557787766544 333212222
Q ss_pred ---------cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Q 014886 264 ---------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 316 (416)
Q Consensus 264 ---------eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k 316 (416)
.-+..-.+..+.+.++.. +..++||.+|--+.+..|+.+.+..|+ |.+.+-
T Consensus 182 GSicttR~~~Gvg~pqltAv~~~a~aa-~~~~v~VIaDGGIr~~gDI~KALA~GA-d~VMlG 241 (343)
T TIGR01305 182 GSVCTTRTKTGVGYPQLSAVIECADAA-HGLKGHIISDGGCTCPGDVAKAFGAGA-DFVMLG 241 (343)
T ss_pred CCcccCceeCCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCcCchhHHHHHHHcCC-CEEEEC
Confidence 122212455555555432 345899999999999999999999984 888764
No 397
>PLN02389 biotin synthase
Probab=31.28 E-value=5.7e+02 Score=25.89 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEE
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKL 207 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~Ki 207 (416)
..+++++.+.++++.+.|++.|=+
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~i 138 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCM 138 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE
Confidence 358899999999999999998865
No 398
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=31.24 E-value=6.7e+02 Score=26.67 Aligned_cols=104 Identities=13% Similarity=0.273 Sum_probs=63.4
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeec--CC-CCCCHHHHHHhHHhhhccC-CCeEEeC-----CCC--CCHH
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKF-GVSVAAD-----ESC--RSLD 299 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~r~~~-~iPIa~d-----Es~--~~~~ 299 (416)
|.+| .++.++-+++++.|.+.|+. +||= |. .+.|.+.++++.+ ... ...|+.= +.+ ....
T Consensus 11 DG~Q~~g~~~s~eeKl~Ia~~L~~~GVd--~IE~G~p~~s~~d~~~v~~i~~---~~~~~~~i~~~~r~~r~~~~~~~d~ 85 (526)
T TIGR00977 11 DGAQREGVSFSLEDKIRIAERLDDLGIH--YIEGGWPGANPKDVQFFWQLKE---MNFKNAKIVAFCSTRRPHKKVEEDK 85 (526)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHH---hCCCCcEEEEEeeecCCCCCCchHH
Confidence 5666 46899999999999999986 9998 65 3556666776653 121 2344431 111 1223
Q ss_pred HHHHHHHcCCCCEEEe-----------CCCCC--c-hHHHHHHHHHHHHcCCcEEEccC
Q 014886 300 DVKKIVKGNLADVINI-----------KLAKV--G-VLGALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 300 d~~~~i~~~a~d~v~~-----------k~~k~--G-i~~~l~i~~~A~~~gi~~~~~~~ 344 (416)
.+..+++.+ .+.+.+ +..+. - +....+.+.+|+.+|..+....+
T Consensus 86 ~~ea~~~~~-~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e 143 (526)
T TIGR00977 86 MLQALIKAE-TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAE 143 (526)
T ss_pred HHHHHhcCC-CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 466666655 455544 22222 1 22345678999999999865443
No 399
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=30.95 E-value=4.7e+02 Score=24.79 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
+.+.+.+.++.+.+.|.+.+=+--. -..++=.+.++.+++. .+++.+++=.... +.++++++++..++.|..
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN-STREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc-cHHHHHHHHHHHHHcCCC
Confidence 5667788888889999988754332 1344555667777776 4567777666443 567889999999998875
Q ss_pred ceeeecCCC--CCCHH---HHHHhHHhhhccCCCeEEeCC------CCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHH
Q 014886 259 PVLFEQPVH--RDDWE---GLGHVSHIAKDKFGVSVAADE------SCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE 327 (416)
Q Consensus 259 ~~~iEeP~~--~~d~~---~~~~l~~~~r~~~~iPIa~dE------s~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~ 327 (416)
-..+=-|.- ..+-+ -++++. +.+++||..=. ...+.+.+.++.+ .-.++-+|-+-..+....+
T Consensus 95 ~v~v~pP~y~~~~~~~~~~~~~~ia----~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~--~~~v~giK~s~~d~~~~~~ 168 (281)
T cd00408 95 GVLVVPPYYNKPSQEGIVAHFKAVA----DASDLPVILYNIPGRTGVDLSPETIARLAE--HPNIVGIKDSSGDLDRLTR 168 (281)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHH----hcCCCCEEEEECccccCCCCCHHHHHHHhc--CCCEEEEEeCCCCHHHHHH
Confidence 445545532 12211 223343 35788887421 2345667777764 3577888876522555555
Q ss_pred HHHHHHHcCCcEEEcc
Q 014886 328 IIEVVRASGLNLMIGG 343 (416)
Q Consensus 328 i~~~A~~~gi~~~~~~ 343 (416)
+.... .-++.+..|.
T Consensus 169 ~~~~~-~~~~~v~~G~ 183 (281)
T cd00408 169 LIALL-GPDFAVLSGD 183 (281)
T ss_pred HHHhc-CCCeEEEEcc
Confidence 44432 1355555443
No 400
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=30.87 E-value=4.8e+02 Score=24.96 Aligned_cols=138 Identities=18% Similarity=0.194 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
+.+.+.+.++.+.+.|.+.+=+--. -..++=.+.++.+++. .+++.+++=+.. -+.+++++.++..++.|..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHHHHHHHcCCC
Confidence 4566788888888899888766432 1344555566777776 445676644433 4788999999999998875
Q ss_pred ceeeecCCC-CCCHHHH-HHhHHhhhccCCCeEEeCCC------CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHH
Q 014886 259 PVLFEQPVH-RDDWEGL-GHVSHIAKDKFGVSVAADES------CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEI 328 (416)
Q Consensus 259 ~~~iEeP~~-~~d~~~~-~~l~~~~r~~~~iPIa~dEs------~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i 328 (416)
-..+=-|.- ....+++ +.+++ +.+.+++||..=.. ..+.+.+.++.+ .-.++-+|-+- | +....++
T Consensus 99 ~v~~~pP~~~~~~~~~i~~~~~~-ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~--~p~v~giK~s~-~d~~~~~~~ 173 (292)
T PRK03170 99 GALVVTPYYNKPTQEGLYQHFKA-IAEATDLPIILYNVPGRTGVDILPETVARLAE--HPNIVGIKEAT-GDLERVSEL 173 (292)
T ss_pred EEEECCCcCCCCCHHHHHHHHHH-HHhcCCCCEEEEECccccCCCCCHHHHHHHHc--CCCEEEEEECC-CCHHHHHHH
Confidence 445555542 1111222 22222 12356788875422 234666666643 34677777653 4 4444443
No 401
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.63 E-value=6.7e+02 Score=26.49 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCC-hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee----
Q 014886 188 AEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF---- 262 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG~~-~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i---- 262 (416)
.+..+.++.+++.|...+-|-.... -+.-++.|+.+|+.+|+ .+-|=+-.-.+.++|...++ .|....++
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~----aGAd~I~vg~g~ 315 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAE----AGADFVKVGIGG 315 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHH----cCCCEEEECCCC
Confidence 3556778888999999988764422 23346778888887653 24444556677887766554 34321122
Q ss_pred -------ecC-CCCCCHHHHHHhHHhhhc---cCC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 263 -------EQP-VHRDDWEGLGHVSHIAKD---KFG--VSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 263 -------EeP-~~~~d~~~~~~l~~~~r~---~~~--iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
++. +..-.+..+.++++..++ ..+ +||.+|--+.+..|+.+++..|+ |.+.+
T Consensus 316 Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA-~~vm~ 380 (502)
T PRK07107 316 GSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGA-DFIML 380 (502)
T ss_pred CcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCC-Ceeee
Confidence 122 222344455554432211 124 99999999999999999999885 77655
No 402
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=30.42 E-value=1.9e+02 Score=30.11 Aligned_cols=83 Identities=10% Similarity=0.014 Sum_probs=61.9
Q ss_pred eeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEE
Q 014886 261 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 261 ~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~ 340 (416)
.-|+.+-..+++.++.+++ .+.+||-.-.-+.+..++.+....|+ |.+.+=+.-++-.....++++|+..|+.+.
T Consensus 89 lTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFiid~~QI~ea~~~GA-DavLLI~~~L~~~~l~~l~~~a~~lGl~~l 163 (454)
T PRK09427 89 LTDEKYFQGSFDFLPIVRA----IVTQPILCKDFIIDPYQIYLARYYGA-DAILLMLSVLDDEQYRQLAAVAHSLNMGVL 163 (454)
T ss_pred ecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcCC-CchhHHHHhCCHHHHHHHHHHHHHcCCcEE
Confidence 4466655667777887764 67899999999999999998888884 888765554443356778999999999987
Q ss_pred EccCCchH
Q 014886 341 IGGMVETR 348 (416)
Q Consensus 341 ~~~~~es~ 348 (416)
+-...+..
T Consensus 164 vEvh~~~E 171 (454)
T PRK09427 164 TEVSNEEE 171 (454)
T ss_pred EEECCHHH
Confidence 64433333
No 403
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=30.21 E-value=2.6e+02 Score=22.44 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=47.7
Q ss_pred HHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHHHHc--CCcEEEccCC
Q 014886 273 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS--GLNLMIGGMV 345 (416)
Q Consensus 273 ~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A~~~--gi~~~~~~~~ 345 (416)
++..+...+++ .+.-+..=....+.+++.+.+.....|++-+-..... .....++++..++. ++.+++|+..
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 34444444443 2555532222234477777777778999999875555 77889999998887 7889998864
No 404
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=30.15 E-value=5.3e+02 Score=25.18 Aligned_cols=159 Identities=9% Similarity=0.139 Sum_probs=81.6
Q ss_pred eeeEeecCCCHHHHHHHHHHHHHcC-CCEEEEecC-C----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 014886 177 TTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG-K----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 244 (416)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~KiKvG-~----------~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~ 244 (416)
|+-.++-..++++..+.+++..+.| ...+-+.++ + +++.-.+.+++||+.. +..+.+.----++..+
T Consensus 94 pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~ 172 (310)
T PRK02506 94 PHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYFDIVH 172 (310)
T ss_pred CEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCCCCCHHH
Confidence 3444554456777777776665666 577777765 1 3444455667777642 1234433333234433
Q ss_pred HHHHHHHHHhCCCCc----------eee----ecCCC--CC----------CHHHHHHhHHhhhccC--CCeEEeCCCCC
Q 014886 245 AVEVLEKLYEMGVTP----------VLF----EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAADESCR 296 (416)
Q Consensus 245 A~~~~~~L~~~~l~~----------~~i----EeP~~--~~----------d~~~~~~l~~~~r~~~--~iPIa~dEs~~ 296 (416)
-.+.+..+...++.. ..+ +.|.. .. ..-.++.+.+ ++++. .+||.+-=-+.
T Consensus 173 ~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~-~~~~~~~~ipIig~GGI~ 251 (310)
T PRK02506 173 FDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRA-FYQRLNPSIQIIGTGGVK 251 (310)
T ss_pred HHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHH-HHHhcCCCCCEEEECCCC
Confidence 333333332222100 011 33432 11 1112233332 12233 68999888899
Q ss_pred CHHHHHHHHHcCCCCEEEeCCCCC--c---hHH-HHHHHHHHHHcCCc
Q 014886 297 SLDDVKKIVKGNLADVINIKLAKV--G---VLG-ALEIIEVVRASGLN 338 (416)
Q Consensus 297 ~~~d~~~~i~~~a~d~v~~k~~k~--G---i~~-~l~i~~~A~~~gi~ 338 (416)
+.+|+.+++.+|+ +.+|+=-+-. | +.. ...+.++.+++|..
T Consensus 252 s~~da~e~i~aGA-~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 298 (310)
T PRK02506 252 TGRDAFEHILCGA-SMVQVGTALHKEGPAVFERLTKELKAIMAEKGYQ 298 (310)
T ss_pred CHHHHHHHHHcCC-CHHhhhHHHHHhChHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999985 8887643321 3 111 12345556666653
No 405
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=30.14 E-value=2.2e+02 Score=27.69 Aligned_cols=71 Identities=30% Similarity=0.340 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCh----hHHHHHHHHHHHhCCCcEEEE------e---CCCCCCHHHHHHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFIL------D---ANEGYKPQEAVEVLEK 251 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~----~~d~~~v~avr~~g~~~~L~v------D---aN~~w~~~~A~~~~~~ 251 (416)
.+++++.+.++...+.|++.|-+--|.++ +.=.+.++.+++.++++.+.. | .+.+.+.++ .++.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e---~l~~ 112 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEE---VLKR 112 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHH---HHHH
Confidence 47889999999888899999998755333 333567788888777766541 1 234444443 4555
Q ss_pred HHhCCCC
Q 014886 252 LYEMGVT 258 (416)
Q Consensus 252 L~~~~l~ 258 (416)
|.+.|+.
T Consensus 113 LkeAGl~ 119 (309)
T TIGR00423 113 LKKAGLD 119 (309)
T ss_pred HHHcCCC
Confidence 6666653
No 406
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=29.83 E-value=5.6e+02 Score=25.39 Aligned_cols=127 Identities=13% Similarity=0.198 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC----------CChhHHHHHHHHHHHhCC------CcEEEEeCCCCCCHHHHHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP------DSSFILDANEGYKPQEAVEVL 249 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG----------~~~~~d~~~v~avr~~g~------~~~L~vDaN~~w~~~~A~~~~ 249 (416)
..++..+.++++.+ ....+-+.+. .+.+.-.+.+++|++... ...+.+=---.++.++...++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia 230 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIA 230 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH
Confidence 35666666665533 3567777664 133344455667766421 256666655556555566677
Q ss_pred HHHHhCCCCc-e----e-----eecCCCCCCH----------HHHHHhHHhhhccC--CCeEEeCCCCCCHHHHHHHHHc
Q 014886 250 EKLYEMGVTP-V----L-----FEQPVHRDDW----------EGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVKG 307 (416)
Q Consensus 250 ~~L~~~~l~~-~----~-----iEeP~~~~d~----------~~~~~l~~~~r~~~--~iPIa~dEs~~~~~d~~~~i~~ 307 (416)
+.+.+.++.- . + ++-|-..... -.++.+.. +++.. .+||.+-=.+.+.+|+.+++..
T Consensus 231 ~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~-~~~~~~~~ipiig~GGI~~~~da~e~l~a 309 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRR-LYAELQGRLPIIGVGGISSAQDALEKIRA 309 (335)
T ss_pred HHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHH-HHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 7666654310 0 1 1222110000 11222222 12233 5899988889999999999998
Q ss_pred CCCCEEEe
Q 014886 308 NLADVINI 315 (416)
Q Consensus 308 ~a~d~v~~ 315 (416)
| +|.+|+
T Consensus 310 G-A~~Vqv 316 (335)
T TIGR01036 310 G-ASLLQI 316 (335)
T ss_pred C-CcHHHh
Confidence 8 577765
No 407
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=29.77 E-value=3.7e+02 Score=24.51 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=8.7
Q ss_pred HHHHHHHcCCcEEEcc
Q 014886 328 IIEVVRASGLNLMIGG 343 (416)
Q Consensus 328 i~~~A~~~gi~~~~~~ 343 (416)
++++|++.|+++++|+
T Consensus 113 ~~~~a~e~~~pv~iH~ 128 (251)
T cd01310 113 QLELAKELNLPVVIHS 128 (251)
T ss_pred HHHHHHHhCCCeEEEe
Confidence 4555555555555554
No 408
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=29.65 E-value=3.6e+02 Score=24.99 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=41.1
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcC
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 336 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~g 336 (416)
+++.++++++ ..++||.++=.+.+.+++.++++.| ++.+.+-... +...-.+.+++++++
T Consensus 59 ~~~~i~~i~~----~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~--~~~p~~~~~i~~~~~ 118 (243)
T cd04731 59 MLDVVERVAE----EVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAA--VENPELIREIAKRFG 118 (243)
T ss_pred cHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchh--hhChHHHHHHHHHcC
Confidence 5666777764 6789999999999999999999887 6777664322 222223344555554
No 409
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.43 E-value=5e+02 Score=24.69 Aligned_cols=152 Identities=14% Similarity=0.135 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-Ch-h-HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceee
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGK-NL-K-EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 262 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~-~~-~-~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~i 262 (416)
+++.+.+. +.+.|-..+-+-+-+ +. + ..-..++.++. .++.++--.++..|.+||++.++.-.+..- ..||
T Consensus 21 s~~~~~~a---i~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~-~~~i 94 (248)
T cd04728 21 SPAIMKEA---IEASGAEIVTVALRRVNIGDPGGESFLDLLDK--SGYTLLPNTAGCRTAEEAVRTARLAREALG-TDWI 94 (248)
T ss_pred CHHHHHHH---HHHhCCCEEEEEEEecccCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhC-CCeE
Confidence 55555443 345788887766642 11 1 11122222322 356777778899999999998887766532 1365
Q ss_pred ecCC-------CCCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--CCCC--CchHHHHHHHH
Q 014886 263 EQPV-------HRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI--KLAK--VGVLGALEIIE 330 (416)
Q Consensus 263 EeP~-------~~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~--k~~k--~Gi~~~l~i~~ 330 (416)
-==+ -+|..+.++.-....++ -.-+|++.| ++...+++.+.| ++++.+ .+-- .|+...--+..
T Consensus 95 KlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d----d~~~ar~l~~~G-~~~vmPlg~pIGsg~Gi~~~~~I~~ 169 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD----DPVLAKRLEDAG-CAAVMPLGSPIGSGQGLLNPYNLRI 169 (248)
T ss_pred EEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC----CHHHHHHHHHcC-CCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 3222 22222223222111111 223667664 566777777776 688876 3322 24422222234
Q ss_pred HHHHcCCcEEEccCCchH
Q 014886 331 VVRASGLNLMIGGMVETR 348 (416)
Q Consensus 331 ~A~~~gi~~~~~~~~es~ 348 (416)
+.+..+++++..+.+.++
T Consensus 170 I~e~~~vpVI~egGI~tp 187 (248)
T cd04728 170 IIERADVPVIVDAGIGTP 187 (248)
T ss_pred HHHhCCCcEEEeCCCCCH
Confidence 455578999987766555
No 410
>PLN02858 fructose-bisphosphate aldolase
Probab=29.34 E-value=4.5e+02 Score=31.62 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh-C-CCcE----E----------EEeCC-CCC-CHHHHHHHHHHH
Q 014886 192 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F----------ILDAN-EGY-KPQEAVEVLEKL 252 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~-g-~~~~----L----------~vDaN-~~w-~~~~A~~~~~~L 252 (416)
+.+.++++.||+.+-+.-. .+.++++++.+.+.+. . -++. | ..+.+ ..+ ++++|.+|++.-
T Consensus 1183 ~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~T 1262 (1378)
T PLN02858 1183 HELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDET 1262 (1378)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhc
Confidence 3456677889999999977 5778898888877652 1 1111 1 11111 125 599999998864
Q ss_pred H--hC-----CCCceeeecCCCCCCHHHHHHhHHhhhccC---CCeEEe-CCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 253 Y--EM-----GVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAA-DESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 253 ~--~~-----~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~---~iPIa~-dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
. -+ +.+=.|-.. -+.-|++-++++++ .+ ++|+.+ |=|=...++++++++.|.. =+|+
T Consensus 1263 gvD~LAvaiGt~HG~Y~~~-~p~l~~~~l~~i~~----~~~~~~vpLVlHGgSG~~~~~~~~ai~~Gi~-KiNi 1330 (1378)
T PLN02858 1263 GIDALAVCIGNVHGKYPAS-GPNLRLDLLKELRA----LSSKKGVLLVLHGASGLPESLIKECIENGVR-KFNV 1330 (1378)
T ss_pred CCcEEeeecccccccCCCC-CCccCHHHHHHHHH----HhcCCCCcEEEeCCCCCCHHHHHHHHHcCCe-EEEe
Confidence 2 11 011013321 13457888888875 44 789884 5666677889999988743 3344
No 411
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=29.33 E-value=4.6e+02 Score=26.02 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCceeeecCCCCC-CHHHHHHhHHhhhccCC-CeEEe-----------CCCCCCHHHHHHHHH
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKFG-VSVAA-----------DESCRSLDDVKKIVK 306 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~r~~~~-iPIa~-----------dEs~~~~~d~~~~i~ 306 (416)
++.++.++.++...+.++.-.++---..++ +++.+.++.+.+++..+ +.+.. -....+.+.++++.+
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lke 158 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKE 158 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred cCCCCEEE--------------eCCCCCchHHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 307 GNLADVIN--------------IKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 307 ~~a~d~v~--------------~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+| +|.+. +.+.+....++++++..|+++|+++..+.+++.+
T Consensus 159 AG-ld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 159 AG-LDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred cC-CCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
No 412
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=29.25 E-value=4.7e+02 Score=24.27 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH--HHHHhC---CCC
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVL--EKLYEM---GVT 258 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~--~~L~~~---~l~ 258 (416)
..+|+... +.+.+.|-..+-+..-.....=.+.++.+++.| ..+.|..|..++.++...++ ..++-. .++
T Consensus 74 ~~~p~~~i---~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 74 VSNPEKWV---DDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc
Confidence 44666544 456667988888887532211124456666654 67888999999988887775 333321 111
Q ss_pred ceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+-+=.|++.+.-++..+++++. .....|+.|=.+ +.+.+..+.+.| +|++.+
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~---~~~~~I~VdGGI-~~~ti~~~~~aG-ad~iVv 200 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKR---YPHLNIQVDGGI-NLETIDIAADAG-ANVIVA 200 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHh---cccCeEEECCCC-CHHHHHHHHHcC-CCEEEE
Confidence 1122455544334444554431 112444444332 334555666666 477655
No 413
>PRK15063 isocitrate lyase; Provisional
Probab=29.24 E-value=6.6e+02 Score=25.98 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=65.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe--------cC-------CChhHHHHHHHHHHHh----CCCcE--EEEeCCCC--
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLK--------VG-------KNLKEDIEVLRAIRAV----HPDSS--FILDANEG-- 239 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiK--------vG-------~~~~~d~~~v~avr~~----g~~~~--L~vDaN~~-- 239 (416)
|...+..+.+.++.+.+.|.-.+-|. +| .+.++=+++|+++|.+ +.+.- -|-|+..+
T Consensus 156 GfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~l 235 (428)
T PRK15063 156 GFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADL 235 (428)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccc
Confidence 34455567888889999998877652 33 2557788899998864 33332 24688653
Q ss_pred --------------------------CCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHH
Q 014886 240 --------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 279 (416)
Q Consensus 240 --------------------------w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~ 279 (416)
-..++|++-+....+ +-...|+|-..+ +.+..+++.+
T Consensus 236 i~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~--d~ee~~~fa~ 298 (428)
T PRK15063 236 LTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTP--DLEEARRFAE 298 (428)
T ss_pred ccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCC--CHHHHHHHHH
Confidence 247899999998888 556679996543 4666777765
No 414
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.12 E-value=6.1e+02 Score=25.55 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (416)
+.++-.+.++.+.+.|+..+-+-+-..-+.|.+.++.+++.+.+..+..- .+...++ ++.+.+.++....+--|
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~--~r~~~~d----i~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILAL--NRAVKSD----IDASIDCGVDAVHIFIA 97 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEE--cccCHHH----HHHHHhCCcCEEEEEEc
Confidence 56777777888888899887754322235666788888776555555543 2223333 23333445431223334
Q ss_pred CCCC------------CHHHHHHhHHhhhccCCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEeCCCCCc-hH--
Q 014886 266 VHRD------------DWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG-VL-- 323 (416)
Q Consensus 266 ~~~~------------d~~~~~~l~~~~r~~~~iPIa~---dEs~~~~~d~~~~i----~~~a~d~v~~k~~k~G-i~-- 323 (416)
.+.. .++...+..+.++ ..+..+.. |.+-.++..+.+++ +.| ++.+.+.=+- | .+
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~-~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT~-G~~~P~ 174 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAK-DHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDTV-GILDPF 174 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEeccC-CCCCHH
Confidence 3321 0122222222222 33544443 44455665554443 445 4555544332 5 33
Q ss_pred HHHHHHH-HHHHcCCcEEEccCCchHHHH
Q 014886 324 GALEIIE-VVRASGLNLMIGGMVETRLAM 351 (416)
Q Consensus 324 ~~l~i~~-~A~~~gi~~~~~~~~es~ig~ 351 (416)
+..++.. +.+..++++-+|+-...+++.
T Consensus 175 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~ 203 (378)
T PRK11858 175 TMYELVKELVEAVDIPIEVHCHNDFGMAT 203 (378)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCcCHHH
Confidence 3444444 344558888888865555444
No 415
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.03 E-value=4.5e+02 Score=23.97 Aligned_cols=143 Identities=20% Similarity=0.248 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEE----eCCC--C---CCHHHHHHHHHHHHh
Q 014886 184 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL----DANE--G---YKPQEAVEVLEKLYE 254 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~v----DaN~--~---w~~~~A~~~~~~L~~ 254 (416)
+.+.....+.++.+.+.|.+.+-+ + . -++++ .+|+. .++.+.. |... - .+. +.++.+.+
T Consensus 23 ~~~~~~i~~~a~~~~~~G~~~~~~--~-~-~~~~~---~i~~~-~~iPil~~~~~~~~~~~~~ig~~~----~~~~~a~~ 90 (219)
T cd04729 23 LHSPEIMAAMALAAVQGGAVGIRA--N-G-VEDIR---AIRAR-VDLPIIGLIKRDYPDSEVYITPTI----EEVDALAA 90 (219)
T ss_pred cCcHHHHHHHHHHHHHCCCeEEEc--C-C-HHHHH---HHHHh-CCCCEEEEEecCCCCCCceeCCCH----HHHHHHHH
Confidence 456677788888899999987553 3 2 23444 44443 2333321 2211 1 122 24455556
Q ss_pred CCCCceeeecCC---CC-CCHHHH-HHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCC--------CCc
Q 014886 255 MGVTPVLFEQPV---HR-DDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA--------KVG 321 (416)
Q Consensus 255 ~~l~~~~iEeP~---~~-~d~~~~-~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~--------k~G 321 (416)
.+....-+--+. +. +....+ ++++ +..++|+.. .+.+..+...+.+.| +|++.+... ..+
T Consensus 91 aGad~I~~~~~~~~~p~~~~~~~~i~~~~----~~g~~~iiv--~v~t~~ea~~a~~~G-~d~i~~~~~g~t~~~~~~~~ 163 (219)
T cd04729 91 AGADIIALDATDRPRPDGETLAELIKRIH----EEYNCLLMA--DISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTED 163 (219)
T ss_pred cCCCEEEEeCCCCCCCCCcCHHHHHHHHH----HHhCCeEEE--ECCCHHHHHHHHHcC-CCEEEccCccccccccCCCC
Confidence 665322222222 11 123322 2333 222588877 467888888888887 798865421 111
Q ss_pred hHHHHHHHHHHHHcCCcEEEccCCc
Q 014886 322 VLGALEIIEVVRASGLNLMIGGMVE 346 (416)
Q Consensus 322 i~~~l~i~~~A~~~gi~~~~~~~~e 346 (416)
...-.+..+.+..+++++..+.+.
T Consensus 164 -~~~~~l~~i~~~~~ipvia~GGI~ 187 (219)
T cd04729 164 -PDFELLKELRKALGIPVIAEGRIN 187 (219)
T ss_pred -CCHHHHHHHHHhcCCCEEEeCCCC
Confidence 111223344455689998876553
No 416
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.80 E-value=6.1e+02 Score=25.47 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEE---EecC------CCh-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 014886 184 IVSPAEAAELASKYRKQGFTTLK---LKVG------KNL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLY 253 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G~~~~K---iKvG------~~~-~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~ 253 (416)
+.+.+++.+.|+.+.+.|.+.++ .|-- .++ ++-++.++++++.. ++.+.-+....-+.+.+.+++
T Consensus 111 IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~-Gl~~~tev~d~~~v~~~~~~~---- 185 (352)
T PRK13396 111 VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT-GLGIITEVMDAADLEKIAEVA---- 185 (352)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc-CCcEEEeeCCHHHHHHHHhhC----
Confidence 46778888889988888887766 1110 011 44455555555542 355665554444333332221
Q ss_pred hCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCC-CHHHHHHHH----HcCCCCEEEeCCCC---C-c-h-
Q 014886 254 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR-SLDDVKKIV----KGNLADVINIKLAK---V-G-V- 322 (416)
Q Consensus 254 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~-~~~d~~~~i----~~~a~d~v~~k~~k---~-G-i- 322 (416)
+ +.+|=- ....+++-++++. +++.||.+---.. +.+++...+ ..|.-+++-..-+- . + -
T Consensus 186 --d--~lqIga-~~~~n~~LL~~va-----~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~ 255 (352)
T PRK13396 186 --D--VIQVGA-RNMQNFSLLKKVG-----AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTR 255 (352)
T ss_pred --C--eEEECc-ccccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCC
Confidence 1 122211 1123455455553 5788888877766 787765544 34555555554311 1 2 1
Q ss_pred --HHHHHHHHHHHHcCCcEEE
Q 014886 323 --LGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 323 --~~~l~i~~~A~~~gi~~~~ 341 (416)
.....+..+-+..++++++
T Consensus 256 ~~~dl~ai~~lk~~~~lPVi~ 276 (352)
T PRK13396 256 NTLDLSVIPVLRSLTHLPIMI 276 (352)
T ss_pred CCcCHHHHHHHHHhhCCCEEE
Confidence 1233445555556888865
No 417
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.55 E-value=2.7e+02 Score=26.05 Aligned_cols=65 Identities=3% Similarity=0.047 Sum_probs=43.3
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEE
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~ 341 (416)
+++-++++++ .+.+||..|=-+.+.++++++++.|+ +-+.+.... +...--+.++++.+|-++++
T Consensus 64 n~~~I~~i~~----~~~~pi~vGGGIrs~e~v~~~l~~Ga-~kvvigt~a--~~~~~~l~~~~~~fg~~ivv 128 (234)
T PRK13587 64 EFDYIKSLRR----LTTKDIEVGGGIRTKSQIMDYFAAGI-NYCIVGTKG--IQDTDWLKEMAHTFPGRIYL 128 (234)
T ss_pred hHHHHHHHHh----hcCCeEEEcCCcCCHHHHHHHHHCCC-CEEEECchH--hcCHHHHHHHHHHcCCCEEE
Confidence 3555666653 67899999999999999999999885 555443221 22233456677777655443
No 418
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=28.30 E-value=5.2e+02 Score=24.51 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCEEEEe--cCCCh-hHHHHHHHHHHHh--CCCcEEEEe-------CCCCCCHHHHHHHHHHHHhCCC
Q 014886 190 AAELASKYRKQGFTTLKLK--VGKNL-KEDIEVLRAIRAV--HPDSSFILD-------ANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiK--vG~~~-~~d~~~v~avr~~--g~~~~L~vD-------aN~~w~~~~A~~~~~~L~~~~l 257 (416)
...+++++++.|-+.+++. +|... +.-.+.+++|++. -.++.+.+- .-..++.++-...++...+.+.
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 4556777889999988876 44321 2233345555553 135555553 1233565554444566667776
Q ss_pred CceeeecCCCCCCHHHHHHhHHhhhccCCCeEE--eCCCCCCHHHHHHHH----HcCCC
Q 014886 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIV----KGNLA 310 (416)
Q Consensus 258 ~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d~~~~i----~~~a~ 310 (416)
. |+--.++. +.+.++++.+ ...+||. .|-+..|..++.+.+ +.|+-
T Consensus 175 D--~vKt~~~~-~~~~l~~~~~----~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 175 D--IVKTNYTG-DPESFREVVE----GCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred C--EEeeCCCC-CHHHHHHHHH----hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 4 88777543 5666777653 2345554 555555777776665 77753
No 419
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=28.23 E-value=4.7e+02 Score=26.51 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=51.0
Q ss_pred HHHhHHhhhccCC-CeEEeCCCCC-CHHHHHHHHHcCCCCEEEeCCCC-------------Cch-H-HH-HHHHHHHHHc
Q 014886 274 LGHVSHIAKDKFG-VSVAADESCR-SLDDVKKIVKGNLADVINIKLAK-------------VGV-L-GA-LEIIEVVRAS 335 (416)
Q Consensus 274 ~~~l~~~~r~~~~-iPIa~dEs~~-~~~d~~~~i~~~a~d~v~~k~~k-------------~Gi-~-~~-l~i~~~A~~~ 335 (416)
+.++-+.+|+.++ .||..-+... +..++.++++.+.+|++.++-.- +|+ + .+ ..+.+.+...
T Consensus 201 l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~ 280 (392)
T cd02808 201 LAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKN 280 (392)
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHc
Confidence 3333333444566 8888777665 77888888888778999988653 231 1 22 2344444433
Q ss_pred ----CCcEEEccCCchHHHHHHHHHH
Q 014886 336 ----GLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 336 ----gi~~~~~~~~es~ig~~a~~hl 357 (416)
.++++..+-+.++.-...++.+
T Consensus 281 ~~~~~i~viasGGI~~g~Dv~kalaL 306 (392)
T cd02808 281 GLRDRVSLIASGGLRTGADVAKALAL 306 (392)
T ss_pred CCCCCCeEEEECCCCCHHHHHHHHHc
Confidence 5788887766666554444433
No 420
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=28.19 E-value=6.4e+02 Score=25.50 Aligned_cols=114 Identities=23% Similarity=0.207 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 184 IVSPAEAAELASKYRKQG-FTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 184 ~~~~~~~~~~~~~~~~~G-~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
.++++++.+.+.++++.+ -.-|=+|++. +..++++.+ +.++++| -|.||..++=|-..-. ...+..++
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~--~~~ag~D-~ItIDG~~GGTGAap~---~~~d~~Gl---- 253 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG--AAKAGAD-FITIDGAEGGTGAAPL---TSMDHVGL---- 253 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH--HHHTT-S-EEEEE-TT---SSEEC---CHHHHC------
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh--hhhccCC-EEEEeCCCCCCCCCch---hHHhhCCC----
Confidence 468899999998888876 6777677652 222333332 4455776 5889998754311000 11233454
Q ss_pred eecCCCCCCHHHHHHhHHhhh---ccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 262 FEQPVHRDDWEGLGHVSHIAK---DKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r---~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
|+ ..++.+..+.|+ .+-.+.+..+=-+.+..|+...+..|+ |.+.+
T Consensus 254 ---P~----~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGA-D~v~i 302 (368)
T PF01645_consen 254 ---PT----EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGA-DAVYI 302 (368)
T ss_dssp ----H----HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-
T ss_pred ---cH----HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCC-CeeEe
Confidence 21 122322222211 133578888888999999999999995 88754
No 421
>PRK08444 hypothetical protein; Provisional
Probab=28.17 E-value=4.7e+02 Score=26.20 Aligned_cols=29 Identities=21% Similarity=-0.001 Sum_probs=21.5
Q ss_pred CCCCchHHHHHHHHHHHHcCCcEEEccCC
Q 014886 317 LAKVGVLGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 317 ~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
+.|.--.+++++...|++.|+++..+.++
T Consensus 183 p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~ 211 (353)
T PRK08444 183 KGKVSSERWLEIHKYWHKKGKMSNATMLF 211 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 44443567899999999999998655444
No 422
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=28.11 E-value=4.8e+02 Score=24.08 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=62.2
Q ss_pred HHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh--CCCcEEEEeCCCCCCHHH---------HHHHHHHHH
Q 014886 191 AELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV--HPDSSFILDANEGYKPQE---------AVEVLEKLY 253 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~--g~~~~L~vDaN~~w~~~~---------A~~~~~~L~ 253 (416)
..+++++++.|-..+++-+. .+.+...+.++++++. .-++++++- .-.+.++ -...++...
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE--~~l~~~~~~~~~~~~~I~~a~ria~ 156 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE--PYLRGEEVADEKKPDLIARAARIAA 156 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE--ECECHHHBSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE--EecCchhhcccccHHHHHHHHHHHH
Confidence 67788899999999998764 2334455667777764 456788887 2222222 344555556
Q ss_pred hCCCCceeeecCCC------CCCHHHHHHhHHhhhccCC------CeEEeCCC----CCCHHHHHHHHHcCC
Q 014886 254 EMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFG------VSVAADES----CRSLDDVKKIVKGNL 309 (416)
Q Consensus 254 ~~~l~~~~iEeP~~------~~d~~~~~~l~~~~r~~~~------iPIa~dEs----~~~~~d~~~~i~~~a 309 (416)
+.+.. ||=-..+ .++.+.++++.+ ..+ +-++.|-+ ..+..+..++++.|+
T Consensus 157 e~GaD--~vKt~tg~~~~~t~~~~~~~~~~~~----~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa 222 (236)
T PF01791_consen 157 ELGAD--FVKTSTGKPVGATPEDVELMRKAVE----AAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGA 222 (236)
T ss_dssp HTT-S--EEEEE-SSSSCSHHHHHHHHHHHHH----THSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTH
T ss_pred HhCCC--EEEecCCccccccHHHHHHHHHHHH----hcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCC
Confidence 77764 7766554 123444555443 333 44555531 134455555666664
No 423
>PLN02334 ribulose-phosphate 3-epimerase
Probab=27.81 E-value=4.9e+02 Score=24.00 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=63.8
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEEEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH--HHhCCCC
Q 014886 182 IPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK--LYEMGVT 258 (416)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~--L~~~~l~ 258 (416)
+-..+|++..+. +.+.|...+-+.++. ..+.-.+.++.+++ .+..+.+..|..-..+.+.++++. .+-..+
T Consensus 72 lmv~~p~d~~~~---~~~~gad~v~vH~~q~~~d~~~~~~~~i~~--~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~- 145 (229)
T PLN02334 72 LMVTNPEDYVPD---FAKAGASIFTFHIEQASTIHLHRLIQQIKS--AGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLV- 145 (229)
T ss_pred eccCCHHHHHHH---HHHcCCCEEEEeeccccchhHHHHHHHHHH--CCCeEEEEECCCCCHHHHHHHHhccCCCEEEE-
Confidence 334567665554 456788999888882 22223334444444 556777777743234443333332 211111
Q ss_pred ceeee-----cCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 259 PVLFE-----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 259 ~~~iE-----eP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.=++ |.+++..++.++++++ ...++||..+=.+ +.+.+..+.+.|+ |++.+
T Consensus 146 -~~v~pg~~~~~~~~~~~~~i~~~~~---~~~~~~I~a~GGI-~~e~i~~l~~aGa-d~vvv 201 (229)
T PLN02334 146 -MSVEPGFGGQSFIPSMMDKVRALRK---KYPELDIEVDGGV-GPSTIDKAAEAGA-NVIVA 201 (229)
T ss_pred -EEEecCCCccccCHHHHHHHHHHHH---hCCCCcEEEeCCC-CHHHHHHHHHcCC-CEEEE
Confidence 0122 2233323344444432 1235788776554 6778888888884 77655
No 424
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=27.70 E-value=4.7e+02 Score=26.29 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCEEEEecC-------------CChhHHHHHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 014886 190 AAELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKvG-------------~~~~~d~~~v~avr~~g-~~~~L~vDaN~~w~~~~A~~~~~~L~~~ 255 (416)
+.+.+.++.+.|...+-|.+. .+.+.-++.++++++.+ ..+++.+=...+++.++..++++.+.+.
T Consensus 148 L~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~ 227 (373)
T PLN02951 148 LSRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDK 227 (373)
T ss_pred HHHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhC
Q ss_pred CCCceeee
Q 014886 256 GVTPVLFE 263 (416)
Q Consensus 256 ~l~~~~iE 263 (416)
++.+.+||
T Consensus 228 gi~vr~ie 235 (373)
T PLN02951 228 PINVRFIE 235 (373)
T ss_pred CCeEEEEE
No 425
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=27.41 E-value=3.8e+02 Score=26.53 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCh----hHHHHHHHHHHHhCCCcEEEEeC---------CCCCCHHHHHHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFILDA---------NEGYKPQEAVEVLEK 251 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~----~~d~~~v~avr~~g~~~~L~vDa---------N~~w~~~~A~~~~~~ 251 (416)
.+++++.+.++.+.+.|.+.|-+--|.++ +.-.+.++.+++.++++.+..-. +.+...+ +.+++
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~---e~l~~ 146 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVE---EALKR 146 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHH---HHHHH
Confidence 47899999999999999999998855322 33356688888877877654321 2222222 45666
Q ss_pred HHhCCCC
Q 014886 252 LYEMGVT 258 (416)
Q Consensus 252 L~~~~l~ 258 (416)
|.+.|+.
T Consensus 147 LkeAGl~ 153 (343)
T TIGR03551 147 LKEAGLD 153 (343)
T ss_pred HHHhCcc
Confidence 7777764
No 426
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=27.29 E-value=4.9e+02 Score=28.73 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=67.2
Q ss_pred HHHHHHHhCCCC-c-eeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHH
Q 014886 247 EVLEKLYEMGVT-P-VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 324 (416)
Q Consensus 247 ~~~~~L~~~~l~-~-~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~ 324 (416)
++++..++.+.. + ..-|+.+-...++.++.+++ .+.+||---+-+.+..++.+....| +|.+.+=+.-++-..
T Consensus 74 ~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFIid~~QI~ea~~~G-ADavLLI~~~L~~~~ 148 (695)
T PRK13802 74 ALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRA----AVHIPVLRKDFIVTDYQIWEARAHG-ADLVLLIVAALDDAQ 148 (695)
T ss_pred HHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcC-CCEeehhHhhcCHHH
Confidence 445555554321 1 23455555567777887764 6899999999999999999988888 599887665555446
Q ss_pred HHHHHHHHHHcCCcEEEccC
Q 014886 325 ALEIIEVVRASGLNLMIGGM 344 (416)
Q Consensus 325 ~l~i~~~A~~~gi~~~~~~~ 344 (416)
..++.++|+..|+.+.+-..
T Consensus 149 l~~l~~~a~~lGme~LvEvh 168 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETH 168 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeC
Confidence 77899999999999876443
No 427
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=27.20 E-value=1e+02 Score=31.33 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHcCCCCEEEeCCCC-Cc--hHH--HHHHHHHHHHcCCcEEE
Q 014886 296 RSLDDVKKIVKGNLADVINIKLAK-VG--VLG--ALEIIEVVRASGLNLMI 341 (416)
Q Consensus 296 ~~~~d~~~~i~~~a~d~v~~k~~k-~G--i~~--~l~i~~~A~~~gi~~~~ 341 (416)
.++..++.+++.+.+-++.+.++. || .++ ..+++++|+++|+.++-
T Consensus 187 IDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 187 IDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred echHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 356678888888888999999987 78 453 68999999999999854
No 428
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.19 E-value=2e+02 Score=25.50 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=33.2
Q ss_pred HHHHHHHHcCCCCEEEeCCCCCc---h-HHHHHHHHHHHHcCCcEEEccCC
Q 014886 299 DDVKKIVKGNLADVINIKLAKVG---V-LGALEIIEVVRASGLNLMIGGMV 345 (416)
Q Consensus 299 ~d~~~~i~~~a~d~v~~k~~k~G---i-~~~l~i~~~A~~~gi~~~~~~~~ 345 (416)
+.+.++++.| ++.+|+...... + ..+.++..+|+++++++++++.+
T Consensus 16 ~~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~ 65 (180)
T PF02581_consen 16 EQLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRV 65 (180)
T ss_dssp HHHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H
T ss_pred HHHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCH
Confidence 3456677777 899999887654 3 34678999999999999998853
No 429
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.17 E-value=6.5e+02 Score=25.21 Aligned_cols=20 Identities=5% Similarity=-0.100 Sum_probs=14.2
Q ss_pred eEEEEEEEECCCceEEEEec
Q 014886 75 ENVAIRIELSNGCVGWGEAP 94 (416)
Q Consensus 75 ~~~iV~v~t~~G~~G~GE~~ 94 (416)
...|+.++..||....|...
T Consensus 46 ~V~I~DtTlRDG~Q~~g~~~ 65 (347)
T PLN02746 46 FVKIVEVGPRDGLQNEKNIV 65 (347)
T ss_pred ceEEEECCCCccCcCCCCCC
Confidence 45677777789988777543
No 430
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=27.02 E-value=6.5e+02 Score=25.20 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=73.8
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHhCCCC---------ceeeecCCCC---------CC-------HHHHHHhHHhh--hc
Q 014886 231 SFILDANEGYKPQEAVEVLEKLYEMGVT---------PVLFEQPVHR---------DD-------WEGLGHVSHIA--KD 283 (416)
Q Consensus 231 ~L~vDaN~~w~~~~A~~~~~~L~~~~l~---------~~~iEeP~~~---------~d-------~~~~~~l~~~~--r~ 283 (416)
-+++=...--+.++|++++++|.+.+-+ -.|+|-|-.. .+ .+|++.+++.+ ..
T Consensus 50 lvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll~~i~ 129 (344)
T TIGR00034 50 LVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLLLDLV 129 (344)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHHHHHH
Confidence 3344555556899999999999875421 1388999432 11 35666555432 13
Q ss_pred cCCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEeCCCCCc--hHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHcc
Q 014886 284 KFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 360 (416)
Q Consensus 284 ~~~iPIa~dEs~-~~~~d~~~~i~~~a~d~v~~k~~k~G--i~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa 360 (416)
.+++|++..=.- .+++-+.+++. +. .+| -++..-..++|...++++.+-..+++.+..+..+-.|+.
T Consensus 130 ~~GlPvatE~ld~~~~~y~~Dlis-----w~-----aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA~ 199 (344)
T TIGR00034 130 NLGLPIAGEFLDMISPQYLADLFS-----WG-----AIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAAA 199 (344)
T ss_pred HhCCCeEEEecCcCcHHHHHHHHh-----hc-----cccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHh
Confidence 679999874221 12333344432 22 235 345555578888899999998887888877776655665
Q ss_pred CC
Q 014886 361 LG 362 (416)
Q Consensus 361 ~~ 362 (416)
.|
T Consensus 200 ~~ 201 (344)
T TIGR00034 200 AP 201 (344)
T ss_pred CC
Confidence 44
No 431
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=26.79 E-value=5.6e+02 Score=26.36 Aligned_cols=125 Identities=14% Similarity=0.290 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (416)
.+++++.+.+++-.++|...+-|+.|- ..+.++.+++.+--..+ |==-+++ +..++...+ =|-
T Consensus 140 mt~d~~~~~ie~qa~~GVDfmTiHcGi----~~~~~~~~~~~~R~~gi-VSRGGs~-------~~~WM~~n~-----~EN 202 (431)
T PRK13352 140 MTEDDLFDVIEKQAKDGVDFMTIHCGV----TRETLERLKKSGRIMGI-VSRGGSF-------LAAWMLHNN-----KEN 202 (431)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEccch----hHHHHHHHHhcCCccCe-ecCCHHH-------HHHHHHHcC-----CcC
Confidence 478889999999999999999999984 23344444432100001 0001111 122233332 266
Q ss_pred CCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCC-CEEEeCCCCCc-hHHHHHHHHHHHHcCCcEEEc
Q 014886 265 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA-DVINIKLAKVG-VLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 265 P~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~-d~v~~k~~k~G-i~~~l~i~~~A~~~gi~~~~~ 342 (416)
|+-. +++.+-++.+ +.++-+.+|..+. .|++ |. -|-.++- +...-+++..|+++|+++|+-
T Consensus 203 Plye-~fD~lLeI~~----~yDVtlSLGDglR----------PG~i~Da--~D~aQi~El~~lgeL~~RA~e~gVQvMVE 265 (431)
T PRK13352 203 PLYE-HFDYLLEILK----EYDVTLSLGDGLR----------PGCIADA--TDRAQIQELITLGELVKRAREAGVQVMVE 265 (431)
T ss_pred chHH-HHHHHHHHHH----HhCeeeeccCCcC----------CCccccC--CcHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 7743 3555555543 6788888876643 1110 00 0111111 222235677778888888875
Q ss_pred c
Q 014886 343 G 343 (416)
Q Consensus 343 ~ 343 (416)
+
T Consensus 266 G 266 (431)
T PRK13352 266 G 266 (431)
T ss_pred C
Confidence 4
No 432
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=26.47 E-value=3.7e+02 Score=26.42 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCCceee---ecCCCCCCHHHHHHhHHhhhccC-CCe-----------EEeCCCCCCHHHHHHH
Q 014886 240 YKPQEAVEVLEKLYEMGVTPVLF---EQPVHRDDWEGLGHVSHIAKDKF-GVS-----------VAADESCRSLDDVKKI 304 (416)
Q Consensus 240 w~~~~A~~~~~~L~~~~l~~~~i---EeP~~~~d~~~~~~l~~~~r~~~-~iP-----------Ia~dEs~~~~~d~~~~ 304 (416)
.++++..+.++.+.+.++.-.+| ++| ..+.+.+.++.+.++++. ++. ++....+.+.+.++.+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p--~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~L 149 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNP--DLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERL 149 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCC--CCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHH
Q ss_pred HHcCCCCEEEeC--------------CCCCchHHHHHHHHHHHHcCCcEEEccCCc
Q 014886 305 VKGNLADVINIK--------------LAKVGVLGALEIIEVVRASGLNLMIGGMVE 346 (416)
Q Consensus 305 i~~~a~d~v~~k--------------~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~e 346 (416)
-+.| ++.+.-. +.++...+.++.+..|++.|+++..+.+++
T Consensus 150 k~aG-~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiG 204 (340)
T TIGR03699 150 KEAG-LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFG 204 (340)
T ss_pred HHcC-CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEee
No 433
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=26.31 E-value=6.1e+02 Score=24.67 Aligned_cols=41 Identities=17% Similarity=0.021 Sum_probs=30.2
Q ss_pred CHHHHHHhHHhhhccCCCeEE--eCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 270 DWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.++++.+ ...+||. +-=-+.|++++..+++.|+ |.+.+
T Consensus 185 ~~elLkei~~----~~~iPVV~fAiGGI~TPedAa~~melGA-dGVaV 227 (287)
T TIGR00343 185 PVELLLEVLK----LGKLPVVNFAAGGVATPADAALMMQLGA-DGVFV 227 (287)
T ss_pred CHHHHHHHHH----hCCCCEEEeccCCCCCHHHHHHHHHcCC-CEEEE
Confidence 4677888764 4579996 4345789999999999985 65544
No 434
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=26.27 E-value=5.5e+02 Score=24.14 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCCEEEEec--CCCh-hHHHHHHHHHHHh--CCCcEEEEeCC------CCCCHHHHHHHHHHHHhCCCC
Q 014886 190 AAELASKYRKQGFTTLKLKV--GKNL-KEDIEVLRAIRAV--HPDSSFILDAN------EGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKv--G~~~-~~d~~~v~avr~~--g~~~~L~vDaN------~~w~~~~A~~~~~~L~~~~l~ 258 (416)
....++++++.|...+.+.. |.+. .+-++.++++++. -.++.+.++.. +..+.++..+.++...+.+..
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GAD 171 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGAD 171 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCC
Confidence 34567778889998887655 3321 2334456666664 24566666533 224444444435666667754
Q ss_pred ceeeecCCCCCCHHHHHHhHHhhhccCCCeEEe--CCCCCCHHHH----HHHHHcCCC
Q 014886 259 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDV----KKIVKGNLA 310 (416)
Q Consensus 259 ~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~--dEs~~~~~d~----~~~i~~~a~ 310 (416)
||=-++. .+.+.++++.+ ...+||.+ |-+..+..++ .++++.|+-
T Consensus 172 --yikt~~~-~~~~~l~~~~~----~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 172 --IVKTPYT-GDIDSFRDVVK----GCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred --EEeccCC-CCHHHHHHHHH----hCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCc
Confidence 7777765 35777887764 35667664 4443354444 445577754
No 435
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=26.26 E-value=4.7e+02 Score=23.30 Aligned_cols=114 Identities=12% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee-----cC
Q 014886 191 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE-----QP 265 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE-----eP 265 (416)
.+.++.+.+.|...+-+..+.. +...+.++.+++.+....+.++.+.. .+...++....+...+ .=++ +.
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~~~~~t~--~e~~~~~~~~~d~i~~--~~~~~g~tg~~ 143 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIVLNPATP--LEFLEYVLPDVDLVLL--MSVNPGFGGQK 143 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHhhCCEEEE--EEEcCCCCccc
Q ss_pred CCCCCHHHHHHhHHhhhccCC-----CeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 266 VHRDDWEGLGHVSHIAKDKFG-----VSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 266 ~~~~d~~~~~~l~~~~r~~~~-----iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+.+..++.++++++ ..+ +||..+=-+ +.+.+.++++.| +|++.+
T Consensus 144 ~~~~~~~~i~~i~~----~~~~~~~~~~i~v~GGI-~~env~~l~~~g-ad~iiv 192 (210)
T TIGR01163 144 FIPDTLEKIREVRK----MIDENGLSILIEVDGGV-NDDNARELAEAG-ADILVA 192 (210)
T ss_pred ccHHHHHHHHHHHH----HHHhcCCCceEEEECCc-CHHHHHHHHHcC-CCEEEE
No 436
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.86 E-value=6.8e+02 Score=25.05 Aligned_cols=122 Identities=15% Similarity=0.205 Sum_probs=75.0
Q ss_pred HHHHHHHHHH--cCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHh---CCCCc--ee
Q 014886 190 AAELASKYRK--QGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTP--VL 261 (416)
Q Consensus 190 ~~~~~~~~~~--~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~---~~l~~--~~ 261 (416)
-.+.++++++ .|...+=|.+. ..-+.-++.|+.+|+.+|+..++ +-.--|.+.|..+++.=.+ -++-+ .+
T Consensus 109 d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vI--aGNV~T~e~a~~Li~aGAD~vKVGIGpGSiC 186 (346)
T PRK05096 109 DFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTIC--AGNVVTGEMVEELILSGADIVKVGIGPGSVC 186 (346)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEE--EecccCHHHHHHHHHcCCCEEEEcccCCccc
Confidence 3456666776 48899888887 34466788899999999987755 3334466666554442111 01100 01
Q ss_pred eecCCC---CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 262 FEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 262 iEeP~~---~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.=+-.. ..++....+.++. .+..++||.+|--+.+.-|+.+.+..|+ |.+.+
T Consensus 187 tTr~vtGvG~PQltAV~~~a~~-a~~~gvpiIADGGi~~sGDI~KAlaaGA-d~VMl 241 (346)
T PRK05096 187 TTRVKTGVGYPQLSAVIECADA-AHGLGGQIVSDGGCTVPGDVAKAFGGGA-DFVML 241 (346)
T ss_pred cCccccccChhHHHHHHHHHHH-HHHcCCCEEecCCcccccHHHHHHHcCC-CEEEe
Confidence 111110 1123333333322 2367999999999999999999999884 88766
No 437
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.83 E-value=6.9e+02 Score=25.10 Aligned_cols=116 Identities=19% Similarity=0.249 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCceeeecCCCCC---------CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 014886 241 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---------DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 311 (416)
Q Consensus 241 ~~~~A~~~~~~L~~~~l~~~~iEeP~~~~---------d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d 311 (416)
+.++.++.++.+.+.++. ......+.+- ..++++.|.+ .+++.++|+.. ++++..++..+.+. +|
T Consensus 130 ~~~~~~~~A~~lk~~g~~-~~r~~~~kpRtsp~~f~g~~~e~l~~L~~-~~~~~Gl~~~t--~v~d~~~~~~l~~~--vd 203 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLK-LLRGGAFKPRTSPYDFQGLGVEGLKILKQ-VADEYGLAVIS--EIVNPADVEVALDY--VD 203 (360)
T ss_pred CHHHHHHHHHHHHHcCCc-EEEccccCCCCCCccccCCCHHHHHHHHH-HHHHcCCCEEE--eeCCHHHHHHHHHh--CC
Q ss_pred EEEeCCCCCc--hHHHHHHHHHHHHcCCcEEEccCC-chHHHHHHHHHHHccCCCCcee
Q 014886 312 VINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFI 367 (416)
Q Consensus 312 ~v~~k~~k~G--i~~~l~i~~~A~~~gi~~~~~~~~-es~ig~~a~~hlaaa~~~~~~~ 367 (416)
++++ | ...-..++..+...|.++.+.... .+.--+..++......+|-...
T Consensus 204 ~lkI-----~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~ 257 (360)
T PRK12595 204 VIQI-----GARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQII 257 (360)
T ss_pred eEEE-----CcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEE
No 438
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=25.83 E-value=7.5e+02 Score=25.51 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCC--cEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec
Q 014886 188 AEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD--SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 264 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~--~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe 264 (416)
+-+...+++..+.|...|.|-=. .|+..=..-++++++.|.. ..+..+-.-..|.+.-.++++.|.+.+++...|-+
T Consensus 98 DvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKD 177 (472)
T COG5016 98 DVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKD 177 (472)
T ss_pred HHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeec
Confidence 33455677788899999886532 3332222336666666543 35666777777888889999999988875334433
Q ss_pred CCCCCCH-HHHHHhHHhhhccCCCeEEeCCCCCC-H--HHHHHHHHcCCCCEE
Q 014886 265 PVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRS-L--DDVKKIVKGNLADVI 313 (416)
Q Consensus 265 P~~~~d~-~~~~~l~~~~r~~~~iPIa~dEs~~~-~--~d~~~~i~~~a~d~v 313 (416)
=----.. ..+. |.+.+++.+++||-+.-.+++ . -.....+++| +|++
T Consensus 178 maGlltP~~aye-lVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAG-vD~i 228 (472)
T COG5016 178 MAGLLTPYEAYE-LVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAG-VDGI 228 (472)
T ss_pred ccccCChHHHHH-HHHHHHHhcCCeeEEecccccchHHHHHHHHHHhC-cchh
Confidence 2111111 1222 222344578888887654432 1 2234556666 5665
No 439
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=25.73 E-value=7.8e+02 Score=25.65 Aligned_cols=143 Identities=12% Similarity=0.222 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHH-----HHcC----CCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q 014886 186 SPAEAAELASKY-----RKQG----FTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM 255 (416)
Q Consensus 186 ~~~~~~~~~~~~-----~~~G----~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~ 255 (416)
+.++..+.++.+ ...| -..+-++.. .+++.-...|++|++.. ++.|.||. ++++.+.+-++...+.
T Consensus 103 ~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~-dvPLSIDT---~dpevleaAleagad~ 178 (450)
T PRK04165 103 DDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT-DLPLILCS---EDPAVLKAALEVVADR 178 (450)
T ss_pred ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc-CCCEEEeC---CCHHHHHHHHHhcCCC
Confidence 345566666666 3344 555555553 34554555677776643 67899997 7787777766666542
Q ss_pred CCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH----HHHcCCCCEEEeCCCCCchHHHH----H
Q 014886 256 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK----IVKGNLADVINIKLAKVGVLGAL----E 327 (416)
Q Consensus 256 ~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~----~i~~~a~d~v~~k~~k~Gi~~~l----~ 327 (416)
.-.+. .+..++++.+..+.. ..+.|+.+.-. +...+.+ +.+.|- +=+.+|+.--|+..++ +
T Consensus 179 ~plI~----Sat~dN~~~m~~la~----~yg~pvVv~~~--dl~~L~~lv~~~~~~GI-~dIILDPg~ggf~ksl~~~~~ 247 (450)
T PRK04165 179 KPLLY----AATKENYEEMAELAK----EYNCPLVVKAP--NLEELKELVEKLQAAGI-KDLVLDPGTENIKETLDDFVQ 247 (450)
T ss_pred CceEE----ecCcchHHHHHHHHH----HcCCcEEEEch--hHHHHHHHHHHHHHcCC-CcEEECCCCchhhhhHHHHHH
Confidence 11111 234467777776654 56778776322 2333333 334565 4556998764443332 2
Q ss_pred HHHH-----HHHcCCcEEEcc
Q 014886 328 IIEV-----VRASGLNLMIGG 343 (416)
Q Consensus 328 i~~~-----A~~~gi~~~~~~ 343 (416)
+... =+.+|.|+..+.
T Consensus 248 iRr~Al~~~~~~lgyPil~~~ 268 (450)
T PRK04165 248 IRRAAIKKGDRPLGYPIIAFP 268 (450)
T ss_pred HHhhhhhcccccCCCCEEEcc
Confidence 3222 234567766544
No 440
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=25.68 E-value=6e+02 Score=24.32 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEe--cC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Q 014886 186 SPAEAAELASKYRKQGFTTLKLK--VG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEA 245 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiK--vG-~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A 245 (416)
+++.+.+.++.+.+.|...|.++ +| ..|.+-.+.++.+++..|++.|-+=++.-+-...|
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~A 209 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALA 209 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHH
Confidence 45556666666666666666655 23 34455555666666666666666666655555444
No 441
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=25.44 E-value=2.6e+02 Score=27.55 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC--------ChhHHHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHH
Q 014886 187 PAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVH--PDSSFILDANEGYKPQEAVEVLE 250 (416)
Q Consensus 187 ~~~~~~~~~~~~~~G~~~~KiKvG~--------~~~~d~~~v~avr~~g--~~~~L~vDaN~~w~~~~A~~~~~ 250 (416)
.+......+++...|| |+..|. .-..+.+|.+.+.+++ +++++++.+-++|...+-+.++.
T Consensus 25 ~~~~~~a~~~L~~~G~---~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld 95 (313)
T COG1619 25 TDALKRAIQRLENLGF---EVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLD 95 (313)
T ss_pred HHHHHHHHHHHHHcCC---EEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcc
Confidence 4444445566677885 444441 2245788999999984 78999999999999877666554
No 442
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=25.17 E-value=5.3e+02 Score=25.10 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCEEEEecC-------------CChhHHHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 193 LASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG-------------~~~~~d~~~v~avr~~g~-~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
.++++.+.|...+-|.+. ...++-++.++.+++.+. .+.+..=...+.+.++..++++.+.+.++.
T Consensus 110 ~~~~L~~agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 110 RAAALKDAGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCe
Confidence 344555667766666653 123334444555555543 444332222344556777777777776665
Q ss_pred ceeee
Q 014886 259 PVLFE 263 (416)
Q Consensus 259 ~~~iE 263 (416)
+.++|
T Consensus 190 v~~ie 194 (331)
T PRK00164 190 LRFIE 194 (331)
T ss_pred EEEEE
Confidence 44444
No 443
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=25.13 E-value=4.3e+02 Score=25.70 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCEEEEecC---CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC
Q 014886 192 ELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR 268 (416)
Q Consensus 192 ~~~~~~~~~G~~~~KiKvG---~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~ 268 (416)
+++.+..+.||..+--+.. .++.+.+..++.|.... + .-.+||.++...+.+ + . .
T Consensus 123 eEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i---~----~~~gyt~~t~~~~~~------------~--~-~ 180 (283)
T cd04727 123 GEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEI---R----KLQSMSEEELYAVAK------------E--I-Q 180 (283)
T ss_pred HHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHH---H----HHhCCCHHHHHhhhc------------c--c-C
Confidence 4455667799999988874 34444444444444321 0 112334332111000 0 1 2
Q ss_pred CCHHHHHHhHHhhhccCCCeEE--eCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 269 DDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 269 ~d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
.+++.++++.+ ..++||. +-=.+++++++..+++.|+ |.+.+
T Consensus 181 ~d~elLk~l~~----~~~iPVV~iAeGGI~Tpena~~v~e~GA-dgVaV 224 (283)
T cd04727 181 APYELVKETAK----LGRLPVVNFAAGGVATPADAALMMQLGA-DGVFV 224 (283)
T ss_pred CCHHHHHHHHH----hcCCCeEEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 35777888764 5679996 4335779999999999885 65544
No 444
>PRK08444 hypothetical protein; Provisional
Probab=24.63 E-value=4e+02 Score=26.68 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCh----hHHHHHHHHHHHhCCCcEEE
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFI 233 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~~----~~d~~~v~avr~~g~~~~L~ 233 (416)
.+++++.+.++++.+.|.+.|=|--|..+ +.=.+.++.|++..|++.+-
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~ 132 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVK 132 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEe
Confidence 47899999999999999999999877333 33355677788777765553
No 445
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.58 E-value=4e+02 Score=23.95 Aligned_cols=63 Identities=24% Similarity=0.351 Sum_probs=42.0
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-h-------HHHHHHHHHHHHcCCcEEEccCCchH
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V-------LGALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i-------~~~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+.|+.|++|.--.+...+..+.... +|++.+|...+- + .-...+..+|+..|+.++..+. |+.
T Consensus 144 ~~G~~ialddfg~~~~~~~~l~~l~-~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV-e~~ 214 (241)
T smart00052 144 ELGVRIALDDFGTGYSSLSYLKRLP-VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV-ETP 214 (241)
T ss_pred HCCCEEEEeCCCCcHHHHHHHHhCC-CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC-CCH
Confidence 4577777777555566665555444 898888865442 2 1234578999999999988664 554
No 446
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=24.47 E-value=6.8e+02 Score=24.59 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=26.2
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 286 GVSVAADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 286 ~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
++||.++=-+.+..|+.+++..| +|.+++
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lG-Ad~V~i 283 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALG-ADLVGM 283 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhC-CCEEEE
Confidence 79999999999999999999998 788876
No 447
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=24.46 E-value=7.7e+02 Score=25.18 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=84.2
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCCEEEEecCCCh--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 180 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~~--~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
..+...+.++..+.++.+.+.|.+.+++ |.+. ....+.++++++.++...+..|..-.=.... .++.+.+.+.
T Consensus 8 ~alD~~~~~~~~~~~~~~~~~Gv~~ie~--g~p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~---~v~~a~~aGA 82 (430)
T PRK07028 8 VALDLLELDRAVEIAKEAVAGGADWIEA--GTPLIKSEGMNAIRTLRKNFPDHTIVADMKTMDTGAI---EVEMAAKAGA 82 (430)
T ss_pred EEeccCCHHHHHHHHHHHHhcCCcEEEe--CCHHHHHhhHHHHHHHHHHCCCCEEEEEeeeccchHH---HHHHHHHcCC
Confidence 3455567888888889888999999974 4221 3456778888887666677777543322322 3344444443
Q ss_pred CceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeC-CCCCC-HHHHHHHHHcCCCCEEEeCCCCC----chHHHHHHHHH
Q 014886 258 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD-ESCRS-LDDVKKIVKGNLADVINIKLAKV----GVLGALEIIEV 331 (416)
Q Consensus 258 ~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~d-Es~~~-~~d~~~~i~~~a~d~v~~k~~k~----Gi~~~l~i~~~ 331 (416)
. ++==|...++. ...++.+..+ +.++++..| =+..+ .+.++.+.+.| +|++.+.+... +....-.+.++
T Consensus 83 d--gV~v~g~~~~~-~~~~~i~~a~-~~G~~~~~g~~s~~t~~e~~~~a~~~G-aD~I~~~pg~~~~~~~~~~~~~l~~l 157 (430)
T PRK07028 83 D--IVCILGLADDS-TIEDAVRAAR-KYGVRLMADLINVPDPVKRAVELEELG-VDYINVHVGIDQQMLGKDPLELLKEV 157 (430)
T ss_pred C--EEEEecCCChH-HHHHHHHHHH-HcCCEEEEEecCCCCHHHHHHHHHhcC-CCEEEEEeccchhhcCCChHHHHHHH
Confidence 2 22111111111 1111111112 357777765 34444 34456666665 79987766431 11111123344
Q ss_pred HHHcCCcEEEccCC
Q 014886 332 VRASGLNLMIGGMV 345 (416)
Q Consensus 332 A~~~gi~~~~~~~~ 345 (416)
.+..+++++.++.+
T Consensus 158 ~~~~~iPI~a~GGI 171 (430)
T PRK07028 158 SEEVSIPIAVAGGL 171 (430)
T ss_pred HhhCCCcEEEECCC
Confidence 45567888776644
No 448
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=24.35 E-value=7.2e+02 Score=24.79 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=78.5
Q ss_pred CCCEEEEecCCChhHHHHHHHHHHHhCC-CcEEEEeCC-CCCCHHHHHHHHHHHHhCC------------CCceeeecCC
Q 014886 201 GFTTLKLKVGKNLKEDIEVLRAIRAVHP-DSSFILDAN-EGYKPQEAVEVLEKLYEMG------------VTPVLFEQPV 266 (416)
Q Consensus 201 G~~~~KiKvG~~~~~d~~~v~avr~~g~-~~~L~vDaN-~~w~~~~A~~~~~~L~~~~------------l~~~~iEeP~ 266 (416)
+..-|.+-+..|.+.-.+.++.+.+++. -+-+.+|+- .+|...+...-++...... .. .++...+
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~ 196 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAG-RAMSGFI 196 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHH-HHHhhcc
Confidence 3444666666565666667777777754 456667764 2232222211000000000 00 0122121
Q ss_pred -CCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc--h----H--H-HHHHHHHHHHc-
Q 014886 267 -HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--V----L--G-ALEIIEVVRAS- 335 (416)
Q Consensus 267 -~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G--i----~--~-~l~i~~~A~~~- 335 (416)
+...++.++++++ .+++||..-+. .+.++.+.+.+.| +|++.+--.. | + . . ...+.+..++.
T Consensus 197 ~~~~~~~~i~~l~~----~~~~PvivKgv-~~~~dA~~a~~~G-~d~I~vsnhg-G~~~d~~~~~~~~L~~i~~~~~~~~ 269 (344)
T cd02922 197 DPTLTWDDIKWLRK----HTKLPIVLKGV-QTVEDAVLAAEYG-VDGIVLSNHG-GRQLDTAPAPIEVLLEIRKHCPEVF 269 (344)
T ss_pred CCCCCHHHHHHHHH----hcCCcEEEEcC-CCHHHHHHHHHcC-CCEEEEECCC-cccCCCCCCHHHHHHHHHHHHHHhC
Confidence 1235666777764 67899998866 6789999998887 5776553221 2 1 1 1 22333333232
Q ss_pred -CCcEEEccCCchHHHHHHHHHH
Q 014886 336 -GLNLMIGGMVETRLAMGFAGHL 357 (416)
Q Consensus 336 -gi~~~~~~~~es~ig~~a~~hl 357 (416)
.++++..+.+.++.-..-++.+
T Consensus 270 ~~~~vi~~GGIr~G~Dv~kalaL 292 (344)
T cd02922 270 DKIEVYVDGGVRRGTDVLKALCL 292 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHc
Confidence 4888887777666554444444
No 449
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=24.29 E-value=5.3e+02 Score=25.16 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=30.0
Q ss_pred CHHHHHHhHHhhhccCCCeEE--eCCCCCCHHHHHHHHHcCCCCEEEe
Q 014886 270 DWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVINI 315 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa--~dEs~~~~~d~~~~i~~~a~d~v~~ 315 (416)
+++.++++.+ ...+||. +-=-++|++++..+++.|+ |.+.+
T Consensus 191 ~~elL~ei~~----~~~iPVV~~AeGGI~TPedaa~vme~GA-dgVaV 233 (293)
T PRK04180 191 PYELVKEVAE----LGRLPVVNFAAGGIATPADAALMMQLGA-DGVFV 233 (293)
T ss_pred CHHHHHHHHH----hCCCCEEEEEeCCCCCHHHHHHHHHhCC-CEEEE
Confidence 4677888764 5579985 3335789999999999985 55544
No 450
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=24.18 E-value=5.4e+02 Score=23.25 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHhCCCcEE--EEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAVHPDSSF--ILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~g~~~~L--~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
+.+....+++++++.|-..+.+-+. .+.++-.+.+.++++...++.+ .+.. +.++.++-.+..+...+.|.
T Consensus 67 ~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~-~~l~~~~i~~a~ria~e~Ga 145 (203)
T cd00959 67 TTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILET-GLLTDEEIIKACEIAIEAGA 145 (203)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEec-CCCCHHHHHHHHHHHHHhCC
Confidence 4455677788999999999998764 2334456668888886335544 3343 33466666666777778776
Q ss_pred CceeeecC--CCC--CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC
Q 014886 258 TPVLFEQP--VHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 309 (416)
Q Consensus 258 ~~~~iEeP--~~~--~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a 309 (416)
. ||--. +.+ -.++..+.+++..+.+.++-++.|-. +..++.++++.|+
T Consensus 146 D--~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGik--t~~~~l~~~~~g~ 197 (203)
T cd00959 146 D--FIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIR--TLEDALAMIEAGA 197 (203)
T ss_pred C--EEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCC--CHHHHHHHHHhCh
Confidence 4 88887 331 12233233333222344555666555 8999999998875
No 451
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=24.09 E-value=6.2e+02 Score=24.58 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeec---CCCCCCHHHHHHhHHhhhccCCCeEEe
Q 014886 215 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAA 291 (416)
Q Consensus 215 ~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~r~~~~iPIa~ 291 (416)
.+.+.|++|++.. ++.++-=....+ ..-++.|.+.++. +|-+ |-|. -+.+..++ .++++|+++
T Consensus 52 ~~~~~I~~Ik~~V-~iPVIGi~K~~~-----~~Ea~~L~eaGvD--iIDaT~r~rP~--~~~~~~iK----~~~~~l~MA 117 (283)
T cd04727 52 ADPKMIKEIMDAV-SIPVMAKVRIGH-----FVEAQILEALGVD--MIDESEVLTPA--DEEHHIDK----HKFKVPFVC 117 (283)
T ss_pred CCHHHHHHHHHhC-CCCeEEeeehhH-----HHHHHHHHHcCCC--EEeccCCCCcH--HHHHHHHH----HHcCCcEEc
Confidence 4566777888753 333321111222 3445667778865 6632 2221 12344443 356899999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCC
Q 014886 292 DESCRSLDDVKKIVKGNLADVINIKL 317 (416)
Q Consensus 292 dEs~~~~~d~~~~i~~~a~d~v~~k~ 317 (416)
| +.|+.+..+.++.| +|++.-+.
T Consensus 118 D--~stleEal~a~~~G-ad~I~TTl 140 (283)
T cd04727 118 G--ARNLGEALRRISEG-AAMIRTKG 140 (283)
T ss_pred c--CCCHHHHHHHHHCC-CCEEEecC
Confidence 7 56788999999988 69998886
No 452
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=23.89 E-value=5.8e+02 Score=24.42 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHHHHHcCCCEEEEecCC-------------ChhHHHHHHHHHHHhCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 193 LASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAVHPD-SSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG~-------------~~~~d~~~v~avr~~g~~-~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
.+..+.+.|...+.|.+.. ..+.-++.++.+++.|-. +.+.+=...+.+.++..++++.+.+.++.
T Consensus 100 ~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~ 179 (302)
T TIGR02668 100 LAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAI 179 (302)
T ss_pred HHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 3445556777777766641 234445556666666533 55554445556777877888888777765
Q ss_pred ceeee
Q 014886 259 PVLFE 263 (416)
Q Consensus 259 ~~~iE 263 (416)
+.++|
T Consensus 180 ~~~ie 184 (302)
T TIGR02668 180 LQLIE 184 (302)
T ss_pred EEEEE
Confidence 44444
No 453
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=23.76 E-value=5.7e+02 Score=23.44 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=66.8
Q ss_pred hCCCcHHHHhCCCCceeeeeEeecCCCHH---HHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhCCCcEEEEe
Q 014886 160 SVSMPLWRLFGGVSNTITTDITIPIVSPA---EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILD 235 (416)
Q Consensus 160 ~~g~pl~~LLGg~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g~~~~L~vD 235 (416)
..++|++-|+-.+.. -..++++ .|.+.++.+++.|.+.|=+-+= .+-.-|.++++.+.+.-.++.+..
T Consensus 48 ~~~ipv~vMIRpr~g-------dF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tF- 119 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGG-------DFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTF- 119 (201)
T ss_dssp HTTSEEEEE--SSSS--------S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-
T ss_pred hcCCceEEEECCCCC-------CccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEE-
Confidence 678888887743211 1234554 4688888899999988776653 455678899999888633555554
Q ss_pred CCCCC----CHHHHHHHHHHHHhCCCCceee---ecCCCCCCHHHHHHhHHhhhccCCCeEEeC--CCCCCHHHHHH
Q 014886 236 ANEGY----KPQEAVEVLEKLYEMGVTPVLF---EQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ESCRSLDDVKK 303 (416)
Q Consensus 236 aN~~w----~~~~A~~~~~~L~~~~l~~~~i---EeP~~~~d~~~~~~l~~~~r~~~~iPIa~d--Es~~~~~d~~~ 303 (416)
|.++ ++.+|++.+..+ ++. .-+ =.+-..+..+.++++.+.. ...+-|..| =+..+...+.+
T Consensus 120 -HRAfD~~~d~~~al~~L~~l---G~~-rVLTSGg~~~a~~g~~~L~~lv~~a--~~~i~Im~GgGv~~~nv~~l~~ 189 (201)
T PF03932_consen 120 -HRAFDEVPDPEEALEQLIEL---GFD-RVLTSGGAPTALEGIENLKELVEQA--KGRIEIMPGGGVRAENVPELVE 189 (201)
T ss_dssp --GGGGGSSTHHHHHHHHHHH---T-S-EEEESTTSSSTTTCHHHHHHHHHHH--TTSSEEEEESS--TTTHHHHHH
T ss_pred -eCcHHHhCCHHHHHHHHHhc---CCC-EEECCCCCCCHHHHHHHHHHHHHHc--CCCcEEEecCCCCHHHHHHHHH
Confidence 6665 356665554444 432 111 0123345567777765532 234555543 44555555443
No 454
>COG2403 Predicted GTPase [General function prediction only]
Probab=23.65 E-value=2.3e+02 Score=28.85 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=50.7
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccCCch
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 347 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es 347 (416)
-.++||-.+++ ..++.++++...+|.+.++.+-+--..-.+++...-+.|..++..+..++
T Consensus 60 p~Gvpi~~~k~---~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~et 120 (449)
T COG2403 60 PLGVPILPEKD---YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKET 120 (449)
T ss_pred cCCcccccccc---HHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCccHH
Confidence 46899999988 78899999999999999999886656678899999999999887655444
No 455
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=23.40 E-value=3.5e+02 Score=27.56 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=73.9
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCC---CCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHH--H
Q 014886 228 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV--K 302 (416)
Q Consensus 228 ~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~--~ 302 (416)
|-..+.+|. .+.++|+++++.+.++.. .|+|==++- .-.+..++|++ ...+.+|-+|=-+.+.... +
T Consensus 173 p~L~vALD~---~~~~~A~~i~~~l~~~~~--~~iKvG~~L~~~~G~~iVk~Lr~---~~~~~~I~~DLK~~Di~~~vv~ 244 (391)
T PRK13307 173 PYLQVALDL---PDLEEVERVLSQLPKSDH--IIIEAGTPLIKKFGLEVISKIRE---VRPDAFIVADLKTLDTGNLEAR 244 (391)
T ss_pred ceEEEecCC---CCHHHHHHHHHhcccccc--eEEEECHHHHHHhCHHHHHHHHH---hCCCCeEEEEecccChhhHHHH
Confidence 344556654 578899999999998754 388854432 22334455543 1256899999998888765 3
Q ss_pred HHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEc-cCCchHHHH
Q 014886 303 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG-GMVETRLAM 351 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~-~~~es~ig~ 351 (416)
.+.+.| +|++.+-..- |.....+..+.++++|+.+.+- ...++++..
T Consensus 245 ~~a~aG-AD~vTVH~ea-~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~ 292 (391)
T PRK13307 245 MAADAT-ADAVVISGLA-PISTIEKAIHEAQKTGIYSILDMLNVEDPVKL 292 (391)
T ss_pred HHHhcC-CCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHH
Confidence 445555 7998887532 3334567889999999998772 222445443
No 456
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=23.23 E-value=8.2e+02 Score=25.07 Aligned_cols=109 Identities=19% Similarity=0.335 Sum_probs=65.3
Q ss_pred eCCC----CCCHHHHHHHHHHHHhCCCCceeeecCCCC---CCHHHHHHhHHhhhccCCC----eEEeCCCCCCHHHHHH
Q 014886 235 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGV----SVAADESCRSLDDVKK 303 (416)
Q Consensus 235 DaN~----~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~r~~~~i----PIa~dEs~~~~~d~~~ 303 (416)
|.+| .++.++=+++++.|+++|+. +||==++. .+.+..+.+.. ..++ .+. .-......++..
T Consensus 12 DG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~--~IE~g~p~~s~~~~~~~~~i~~----~~~~~~~~~~~-~~~~~~~~~~ea 84 (409)
T COG0119 12 DGEQAPGVSFSVEEKIRIAKALDDLGVD--YIEAGFPVASPGDFEFVRAIAE----KAGLFICALIA-ALARAIKRDIEA 84 (409)
T ss_pred cCCcCCCCcCCHHHHHHHHHHHHHcCCC--EEEEeCCcCChhhHHHHHHHHH----hcCcccchhhh-hhHHhHHhhHHH
Confidence 5555 47899999999999999985 99976663 35555555541 1121 111 111122236777
Q ss_pred HHHcCCCCEEE-------------eCCCCCc-hHHHHHHHHHHHHcCCcEE--EccCCchHHHH
Q 014886 304 IVKGNLADVIN-------------IKLAKVG-VLGALEIIEVVRASGLNLM--IGGMVETRLAM 351 (416)
Q Consensus 304 ~i~~~a~d~v~-------------~k~~k~G-i~~~l~i~~~A~~~gi~~~--~~~~~es~ig~ 351 (416)
+++.+. +.+. ++.++.- +..+.+.+.+|+.+|+.+. +.+.+.+..-.
T Consensus 85 ~~~a~~-~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~ 147 (409)
T COG0119 85 LLEAGV-DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEF 147 (409)
T ss_pred HHhCCC-CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHH
Confidence 777764 4322 2222223 3346778999999999988 44444444433
No 457
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=23.00 E-value=1.8e+02 Score=31.48 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCc
Q 014886 188 AEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV---HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 259 (416)
Q Consensus 188 ~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~---g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~ 259 (416)
+.+.+.++++. .--..+-||.. .....|-..|+++-++ |.++..+|.--.+|+.+.=+.|++.|++.|++.
T Consensus 355 ~~Vv~fl~qAA-~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVELkARFDEE~NI~WAk~LE~AGvhV 429 (696)
T COG0855 355 EPVVEFLRQAA-ADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVELKARFDEEANIHWAKRLERAGVHV 429 (696)
T ss_pred HHHHHHHHHhh-cCCCeEEEEEEEEecCCCCHHHHHHHHHHHcCCeEEEEEEEhhhcChhhhhHHHHHHHhCCcEE
Confidence 44566665543 34555666654 1223455566666653 778999999999999999999999999988763
No 458
>PRK05443 polyphosphate kinase; Provisional
Probab=22.91 E-value=1.9e+02 Score=31.84 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=49.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHh---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 183 PIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV---HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~---g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
|..+-+.+.+.++++.. --..+.||+. --+..|-..++++.++ |-+++++|+...+++.+..+.|++.|++.|++
T Consensus 346 PY~SF~~~~~~i~~Aa~-DP~V~~Ik~tlYr~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~ 424 (691)
T PRK05443 346 PYESFDPVVEFLRQAAA-DPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVH 424 (691)
T ss_pred CccCchHHHHHHHHhcc-CCCeeEEEEEEEEecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCE
Confidence 33344445555554432 2233444443 1123345566666653 77899999999999998889999999999986
Q ss_pred c
Q 014886 259 P 259 (416)
Q Consensus 259 ~ 259 (416)
+
T Consensus 425 V 425 (691)
T PRK05443 425 V 425 (691)
T ss_pred E
Confidence 4
No 459
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=22.89 E-value=3.6e+02 Score=25.52 Aligned_cols=65 Identities=20% Similarity=0.287 Sum_probs=47.0
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEE
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 341 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~ 341 (416)
+.+..+++.+ .+++||-.|=-+.+.+++.++++.|. +.+.+=.. -+...-.+.++|+++|-++++
T Consensus 63 n~~~i~~i~~----~~~~~vQvGGGIRs~~~v~~ll~~G~-~rViiGt~--av~~p~~v~~~~~~~g~rivv 127 (241)
T COG0106 63 NLEAIKEILE----ATDVPVQVGGGIRSLEDVEALLDAGV-ARVIIGTA--AVKNPDLVKELCEEYGDRIVV 127 (241)
T ss_pred cHHHHHHHHH----hCCCCEEeeCCcCCHHHHHHHHHCCC-CEEEEecc--eecCHHHHHHHHHHcCCcEEE
Confidence 4455666653 67889999999999999999999885 55444111 144566788999999977765
No 460
>PRK06256 biotin synthase; Validated
Probab=22.63 E-value=7.3e+02 Score=24.22 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=34.6
Q ss_pred HHHHHHcCCCEEEEec------------CCChhHHHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCC
Q 014886 194 ASKYRKQGFTTLKLKV------------GKNLKEDIEVLRAIRAVH--PDSSFILDANEGYKPQEAVEVLEKLYEMGV 257 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKv------------G~~~~~d~~~v~avr~~g--~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l 257 (416)
++.+.+.|.+.+-+.+ +.+.++-++.++.+++.| -...+++-. +.+.++..+.++.+.++++
T Consensus 155 l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl--gEt~ed~~~~~~~l~~l~~ 230 (336)
T PRK06256 155 AERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM--GESLEDRVEHAFFLKELDA 230 (336)
T ss_pred HHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC--CCCHHHHHHHHHHHHhCCC
Confidence 3445667777665422 134455556677777764 223455544 3556666666666665543
No 461
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.56 E-value=9e+02 Score=25.30 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=67.3
Q ss_pred HHHHHHcCCCEEEEecC-CChhHHHHHHHHHHHhC-CCc-EEEEeCCCCCC-HHHHHHHHHHHHhCCCCceeeecCCCCC
Q 014886 194 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVH-PDS-SFILDANEGYK-PQEAVEVLEKLYEMGVTPVLFEQPVHRD 269 (416)
Q Consensus 194 ~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~~g-~~~-~L~vDaN~~w~-~~~A~~~~~~L~~~~l~~~~iEeP~~~~ 269 (416)
.+++.++|...+.=+.| ..+++-++.++.+++.| .|+ .+.+|.+.+-+ .++|.+.++.=.+.+-. ..===|+-.+
T Consensus 50 L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s-~LNGfP~Vnh 128 (480)
T TIGR01503 50 LELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRS-LLNGFPGVNH 128 (480)
T ss_pred HHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCCCccceeeecccccccHHHHHHHHHhhhhcCcc-cccCCCcccc
Confidence 34455677777766666 46788889999999984 664 78999999886 67776655533221100 0001177677
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHH
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 304 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~ 304 (416)
-++..+++.. ....||-.-=.-.+...+.+.
T Consensus 129 Gv~~~R~l~~----~v~~PvQvRHGtpDarlL~e~ 159 (480)
T TIGR01503 129 GVKGCRKVLE----AVNLPLQIRHGTPDARLLAEI 159 (480)
T ss_pred cHHHHHHHHH----hCCCCeeccCCCCcHHHHHHH
Confidence 7788888764 667888765444444444443
No 462
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.37 E-value=7e+02 Score=23.97 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecC------CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVG------KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 258 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG------~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~ 258 (416)
+.+.+.+.++.+++.|.+.+=+--. -+.++=.+.++.+.+. ..++.+++=.. . +.+++++.++..++.|..
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-cHHHHHHHHHHHHHhCCC
Confidence 5567888899999999998765432 1334445556666665 45677777665 3 689999999999998875
Q ss_pred ceeeecCCCC-CCHHHHHH-hHHhhhccCCCeEEeCCC---CCCHHHHHHHHHcCCCCEEEeCCCCCc-hHHHHHHHHHH
Q 014886 259 PVLFEQPVHR-DDWEGLGH-VSHIAKDKFGVSVAADES---CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVV 332 (416)
Q Consensus 259 ~~~iEeP~~~-~d~~~~~~-l~~~~r~~~~iPIa~dEs---~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~~l~i~~~A 332 (416)
...+=-|.-. ...+++.+ .+. +.+.+++||..=.. -.+++.+.++.+. .-.++-+|-+ .| +....++....
T Consensus 102 av~~~pP~y~~~s~~~i~~~f~~-v~~a~~~pvilYn~~g~~l~~~~~~~La~~-~~nvvgiKds-~~d~~~~~~~~~~~ 178 (296)
T TIGR03249 102 GYLLLPPYLINGEQEGLYAHVEA-VCESTDLGVIVYQRDNAVLNADTLERLADR-CPNLVGFKDG-IGDMEQMIEITQRL 178 (296)
T ss_pred EEEECCCCCCCCCHHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHHHHHHHhh-CCCEEEEEeC-CCCHHHHHHHHHHc
Confidence 4455555431 12233222 221 22367888775332 2356667777642 2477778876 35 66666554332
Q ss_pred HHcCCcEEEc
Q 014886 333 RASGLNLMIG 342 (416)
Q Consensus 333 ~~~gi~~~~~ 342 (416)
. -++.+..|
T Consensus 179 ~-~~~~v~~G 187 (296)
T TIGR03249 179 G-DRLGYLGG 187 (296)
T ss_pred C-CCeEEEeC
Confidence 1 24555554
No 463
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=22.23 E-value=5.1e+02 Score=25.02 Aligned_cols=86 Identities=9% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCC
Q 014886 218 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 297 (416)
Q Consensus 218 ~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~ 297 (416)
+.++++|+..|+.++-|++. +.+||.+.++ .+..+..+.- ++++++....+..+..+.+..+-++.| .+
T Consensus 177 ~av~~~r~~~~~~kIeVEv~---tleea~ea~~----~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~~leasGG---I~ 245 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEAD---TIEQALTVLQ----ASPDILQLDK-FTPQQLHHLHERLKFFDHIPTLAAAGG---IN 245 (277)
T ss_pred HHHHHHHHhCCCCCEEEECC---CHHHHHHHHH----cCcCEEEECC-CCHHHHHHHHHHHhccCCCEEEEEECC---CC
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 014886 298 LDDVKKIVKGNLADVINI 315 (416)
Q Consensus 298 ~~d~~~~i~~~a~d~v~~ 315 (416)
...+..+...| +|++..
T Consensus 246 ~~ni~~ya~~G-vD~is~ 262 (277)
T TIGR01334 246 PENIADYIEAG-IDLFIT 262 (277)
T ss_pred HHHHHHHHhcC-CCEEEe
No 464
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.19 E-value=3e+02 Score=26.74 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEe-----cC---CChhHHHHHHH----HHHHhCCCcEEEEeCCCCCCHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLK-----VG---KNLKEDIEVLR----AIRAVHPDSSFILDANEGYKPQEA 245 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiK-----vG---~~~~~d~~~v~----avr~~g~~~~L~vDaN~~w~~~~A 245 (416)
.+++.+.+++++++++|-..+-|- .| -+.+++++||. ++++.. ++.|.||....=..+.|
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~~~~va~~A 106 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTSKPEVIRES 106 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECCCHHHHHHH
Confidence 367889999999999999998776 33 23456766654 333322 68899997554333333
No 465
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.16 E-value=3.7e+02 Score=26.19 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHH--cCCcEEEc
Q 014886 293 ESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRA--SGLNLMIG 342 (416)
Q Consensus 293 Es~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~--~gi~~~~~ 342 (416)
=++.|.+++.++++.| +|++++|.. |.....+++.+.++ -.+++...
T Consensus 201 VEv~tleea~eA~~~G-aD~I~LDn~--~~e~l~~av~~~~~~~~~i~leAs 249 (288)
T PRK07428 201 VETETLEQVQEALEYG-ADIIMLDNM--PVDLMQQAVQLIRQQNPRVKIEAS 249 (288)
T ss_pred EECCCHHHHHHHHHcC-CCEEEECCC--CHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3678899999999887 699999955 44445555555543 34454443
No 466
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=22.15 E-value=3.4e+02 Score=25.75 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC---ChhHHHHHH-HHHHHhCCCcEEEEeCCCCCCHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGK---NLKEDIEVL-RAIRAVHPDSSFILDANEGYKPQEAV 246 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~---~~~~d~~~v-~avr~~g~~~~L~vDaN~~w~~~~A~ 246 (416)
.+++.+.+.++++++.|-..+-|-.+. +.++++.|+ ..+++.. +..|.||....=..+.|+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~-~~piSIDT~~~~v~e~aL 87 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEP-TVPLMLDSTNWEVIEAGL 87 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCcEEeeCCcHHHHHHHH
Confidence 467888899999999999999887763 223334443 2244333 688999987433333333
No 467
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.96 E-value=6.4e+02 Score=23.31 Aligned_cols=133 Identities=18% Similarity=0.237 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCChhHH-HHHHHHHHHh--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecCCC
Q 014886 191 AELASKYRKQGFTTLKLKVGKNLKED-IEVLRAIRAV--HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 267 (416)
Q Consensus 191 ~~~~~~~~~~G~~~~KiKvG~~~~~d-~~~v~avr~~--g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP~~ 267 (416)
.+.++++++-|-+.+.++.-.....+ .+..+.+++. ..++.++|+ ..|+. +..+...+++ +.|=
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~v~liIN--d~~dl------A~~~~AdGVH---lGq~-- 90 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYGVPLIIN--DRVDL------ALAVGADGVH---LGQD-- 90 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhCCeEEec--CcHHH------HHhCCCCEEE---cCCc--
Confidence 57778888999999998875333333 5666677775 356777764 44433 3345556664 2221
Q ss_pred CCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-----CCCCCc--hHHHHHHHHHHHHcCCcEE
Q 014886 268 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-----KLAKVG--VLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 268 ~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~-----k~~k~G--i~~~l~i~~~A~~~gi~~~ 340 (416)
.......+++ .+--...|=|+++.+++.+..+.+ +|++-+ ..+|-+ ......+..+.+...+|++
T Consensus 91 D~~~~~ar~~-------~~~~~iIG~S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~v 162 (211)
T COG0352 91 DMPLAEAREL-------LGPGLIIGLSTHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVV 162 (211)
T ss_pred ccchHHHHHh-------cCCCCEEEeecCCHHHHHHHHhcC-CCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEE
Confidence 1112222222 233344566899999999988877 799853 333333 1112222233344448864
Q ss_pred -EccC
Q 014886 341 -IGGM 344 (416)
Q Consensus 341 -~~~~ 344 (416)
+|+.
T Consensus 163 AIGGi 167 (211)
T COG0352 163 AIGGI 167 (211)
T ss_pred EEcCC
Confidence 5665
No 468
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=21.71 E-value=98 Score=20.64 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHh
Q 014886 193 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 226 (416)
Q Consensus 193 ~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~ 226 (416)
.+.++...||..++.-.|-...++.+..+.+|.+
T Consensus 3 ~a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~A 36 (41)
T PF11590_consen 3 TAERLRSAGFATIGSGAGLPSSEEEETRQKLRRA 36 (41)
T ss_dssp HHHHHHHTT-EEECTTS------HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccCccccchhhHHHHHHHHHH
Confidence 3556778999998877764444555555666654
No 469
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=21.61 E-value=4.1e+02 Score=25.03 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=48.2
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCc-hHH-------HHHHHHHHHHcCCcEEEccCCchH
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG-------ALEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~G-i~~-------~l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
..|+.|+.|.-=.+...+..+.+. .+|++-+|.+.+. +.. ...+..+|+..|+.++.-+- ||.
T Consensus 147 ~~G~~ialDDFGtG~ssl~~L~~l-~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV-Et~ 217 (256)
T COG2200 147 ELGVRIALDDFGTGYSSLSYLKRL-PPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV-ETE 217 (256)
T ss_pred HCCCeEEEECCCCCHHHHHHHhhC-CCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec-CCH
Confidence 468999999888888888777665 4899999977664 321 34579999999999988764 654
No 470
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=21.47 E-value=7.9e+02 Score=24.22 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=66.8
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHH----HhCCC--CceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHH
Q 014886 229 DSSFILDANEGYKPQEAVEVLEKL----YEMGV--TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 302 (416)
Q Consensus 229 ~~~L~vDaN~~w~~~~A~~~~~~L----~~~~l--~~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~ 302 (416)
.+.+=||++-+++.+.-++-+++| ++.++ .-.+|-=|... +|++..+..- +-||++-+- -+++..+..
T Consensus 90 ~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~IKIPaT~---eGi~A~~~L~--~~GI~vn~T-lvFS~~Qa~ 163 (313)
T cd00957 90 RVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILIKIAATW---EGIQAAKQLE--KEGIHCNLT-LLFSFAQAV 163 (313)
T ss_pred CEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEEEeCCCH---HHHHHHHHHH--HCCCceeee-eecCHHHHH
Confidence 367779998888766555444444 33222 11377777654 5555544321 336666543 378999998
Q ss_pred HHHHcCCCCEEEeCCCCC-------------------chHHHHHHHHHHHHcCCcE
Q 014886 303 KIVKGNLADVINIKLAKV-------------------GVLGALEIIEVVRASGLNL 339 (416)
Q Consensus 303 ~~i~~~a~d~v~~k~~k~-------------------Gi~~~l~i~~~A~~~gi~~ 339 (416)
...++| ++++.|=++|+ |+....++..+-+.+|.+.
T Consensus 164 ~aa~AG-a~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T 218 (313)
T cd00957 164 ACAEAG-VTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKT 218 (313)
T ss_pred HHHHcC-CCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCc
Confidence 888988 58887766554 4445678888888988764
No 471
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.45 E-value=6.7e+02 Score=23.52 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHh-CCCCceeeecCCCC---CCHHHHHHhHHhhhccCCC-eEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 014886 240 YKPQEAVEVLEKLYE-MGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGV-SVAADESCRSLDDVKKIVKGNLADVIN 314 (416)
Q Consensus 240 w~~~~A~~~~~~L~~-~~l~~~~iEeP~~~---~d~~~~~~l~~~~r~~~~i-PIa~dEs~~~~~d~~~~i~~~a~d~v~ 314 (416)
.+.++...+...-++ ++..+.|+|.=-.. .+.+-++++++ .+++ ||..|=-+.+.+++++++..| +|.++
T Consensus 137 ~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~----~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VV 211 (232)
T PRK04169 137 LDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKK----ALDITPLIYGGGIRSPEQARELMAAG-ADTIV 211 (232)
T ss_pred CChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHH----hcCCCcEEEECCCCCHHHHHHHHHhC-CCEEE
Confidence 444554444333332 34444688843221 23555666653 5677 999999999999999989888 58876
Q ss_pred e
Q 014886 315 I 315 (416)
Q Consensus 315 ~ 315 (416)
+
T Consensus 212 V 212 (232)
T PRK04169 212 V 212 (232)
T ss_pred E
Confidence 6
No 472
>PRK00208 thiG thiazole synthase; Reviewed
Probab=21.23 E-value=4.8e+02 Score=24.88 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-ChhH-HHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeee
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGK-NLKE-DIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 263 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~-~~~~-d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iE 263 (416)
+++.+.+. +.+.|-..+-+-+-+ +... .-..++.|.. .++.++--.++..|.+||++.++.-.+..- ..||-
T Consensus 22 s~~~~~~a---i~asg~~ivTvalrR~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~-~~~iK 95 (250)
T PRK00208 22 SPQVMQEA---IEASGAEIVTVALRRVNLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEEAVRTARLAREALG-TNWIK 95 (250)
T ss_pred CHHHHHHH---HHHhCCCeEEEEEEeecCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhC-CCeEE
Confidence 55555443 345788777776641 1111 1122222221 356777778889999999998887766421 13653
Q ss_pred cCCC-------CCCHHHHHHhHHhhhc-cCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--CCCC--CchHHHHHHHHH
Q 014886 264 QPVH-------RDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI--KLAK--VGVLGALEIIEV 331 (416)
Q Consensus 264 eP~~-------~~d~~~~~~l~~~~r~-~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~--k~~k--~Gi~~~l~i~~~ 331 (416)
==+- +|..+.++.-....++ -.-+|++. .++...+++.+.| ++++.+ .+-- .|+...-.+..+
T Consensus 96 lEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~----~d~~~ak~l~~~G-~~~vmPlg~pIGsg~gi~~~~~i~~i 170 (250)
T PRK00208 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT----DDPVLAKRLEEAG-CAAVMPLGAPIGSGLGLLNPYNLRII 170 (250)
T ss_pred EEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeC----CCHHHHHHHHHcC-CCEeCCCCcCCCCCCCCCCHHHHHHH
Confidence 2222 2222222222111111 22356766 4566777777776 688866 3221 233222223444
Q ss_pred HHHcCCcEEEccCCchH
Q 014886 332 VRASGLNLMIGGMVETR 348 (416)
Q Consensus 332 A~~~gi~~~~~~~~es~ 348 (416)
.+..+++++..+-+.++
T Consensus 171 ~e~~~vpVIveaGI~tp 187 (250)
T PRK00208 171 IEQADVPVIVDAGIGTP 187 (250)
T ss_pred HHhcCCeEEEeCCCCCH
Confidence 44468999887766554
No 473
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=21.15 E-value=4.2e+02 Score=24.20 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=41.4
Q ss_pred CHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCC
Q 014886 270 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 337 (416)
Q Consensus 270 d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi 337 (416)
+++-++++++ .+++||..|=-+.+.++++++++.|+ |.+.+-... +.....+.++++++|.
T Consensus 60 ~~~~i~~i~~----~~~~pi~~ggGI~~~ed~~~~~~~Ga-~~vvlgs~~--l~d~~~~~~~~~~~g~ 120 (230)
T TIGR00007 60 NLPVIKKIVR----ETGVPVQVGGGIRSLEDVEKLLDLGV-DRVIIGTAA--VENPDLVKELLKEYGP 120 (230)
T ss_pred cHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcCC-CEEEEChHH--hhCHHHHHHHHHHhCC
Confidence 4455566653 56889999989999999999999874 655432111 2334556778888873
No 474
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=21.14 E-value=4.7e+02 Score=26.66 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHHHHcCCCCEEEeCCCCCchHHHHHHHHHHHHcCCcEEEccCCchHHHHHHHHHHHccC
Q 014886 300 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 361 (416)
Q Consensus 300 d~~~~i~~~a~d~v~~k~~k~Gi~~~l~i~~~A~~~gi~~~~~~~~es~ig~~a~~hlaaa~ 361 (416)
-++.+++.| ++++ |.+.-.-. ..++...|++.|+.+++++.+..|+....+.|.+.-+
T Consensus 84 i~ka~i~~g-v~yv--Dts~~~~~-~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~ 141 (389)
T COG1748 84 ILKACIKTG-VDYV--DTSYYEEP-PWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKEL 141 (389)
T ss_pred HHHHHHHhC-CCEE--EcccCCch-hhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHh
Confidence 344556655 4654 44443311 2778899999999999999999998888877777644
No 475
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.12 E-value=1e+02 Score=29.73 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCCCEEEEec-CCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHH
Q 014886 190 AAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ 243 (416)
Q Consensus 190 ~~~~~~~~~~~G~~~~KiKv-G~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~ 243 (416)
+.+....+.+-|.+.||+-. +.+-++-++..+.|.+.-.+-+||||.+++.-+.
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~kPt 162 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHGATKPT 162 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETTS---T
T ss_pred HHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecCCcCCC
Confidence 34556778889999998875 4555666776666666545668999999988654
No 476
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=21.01 E-value=5.2e+02 Score=26.26 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecC-CChhHHHHHHHHHHH-h---CCCcEEEEeCC--CCCCHHHHHHHHHHHHh
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRA-V---HPDSSFILDAN--EGYKPQEAVEVLEKLYE 254 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG-~~~~~d~~~v~avr~-~---g~~~~L~vDaN--~~w~~~~A~~~~~~L~~ 254 (416)
++.++..++++.+.+.|+..|=+.+| .+. ...++|..+-+ + +-++-|+.|-+ +.|+.++.+++++....
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig~~d~-~~~~~l~~a~~AA~~~gFKlf~SfD~~~~~~~~~~~~~~~i~~y~~ 89 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIGSSDS-WQPDQLADAYQAAEAVGFKLFFSFDMNSLGPWSQDELIALIKKYAG 89 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCc-ccHHHHHHHHHHHHhcCCEEEEEecccCCCCCCHHHHHHHHHHHcC
Confidence 47788889999999999999999999 443 33344443333 2 33455678986 57888888888887765
No 477
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=20.98 E-value=2.4e+02 Score=27.72 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=46.3
Q ss_pred cCCCeEEeCCCCCCHHHHHHHHHcC-CCCEEEeCCCCCchHHH-HHHHHHHHHcCCcEEEccCCchH
Q 014886 284 KFGVSVAADESCRSLDDVKKIVKGN-LADVINIKLAKVGVLGA-LEIIEVVRASGLNLMIGGMVETR 348 (416)
Q Consensus 284 ~~~iPIa~dEs~~~~~d~~~~i~~~-a~d~v~~k~~k~Gi~~~-l~i~~~A~~~gi~~~~~~~~es~ 348 (416)
+.+.-=+.|-|.++.+.+.++.+.. .++.+|..-+.+- .+. ..++.+|+++|+.+.+.+.+..+
T Consensus 146 ~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~-R~~e~~l~~~~~~~gi~~~~~spla~G 211 (316)
T COG0667 146 REGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLE-RDAEKELLPLCREEGIGLLAYSPLASG 211 (316)
T ss_pred HcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCcccc-ccchhHHHHHHHHcCCeEEEecCcccc
Confidence 3466677888888999999988773 5677777665543 122 23899999999999987766444
No 478
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.88 E-value=2.6e+02 Score=23.33 Aligned_cols=43 Identities=21% Similarity=0.361 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCCEEE-eCCCCCc--hHHHHHHHHHHHHcCCcEEEc
Q 014886 300 DVKKIVKGNLADVIN-IKLAKVG--VLGALEIIEVVRASGLNLMIG 342 (416)
Q Consensus 300 d~~~~i~~~a~d~v~-~k~~k~G--i~~~l~i~~~A~~~gi~~~~~ 342 (416)
.+.+.++.|.+|++. -++.++| ..++.++...++.+|+.++.-
T Consensus 56 ~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~~ 101 (148)
T smart00857 56 RLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKGVRLVSV 101 (148)
T ss_pred HHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCCCEEEEC
Confidence 334444567676654 5588888 668899999999999998764
No 479
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=20.84 E-value=3.9e+02 Score=25.23 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------hhHHHHHHHHHHHh---CCCcEEEEeCCCCCCHHHHH
Q 014886 185 VSPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAV---HPDSSFILDANEGYKPQEAV 246 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~~KiKvG~~--------~~~d~~~v~avr~~---g~~~~L~vDaN~~w~~~~A~ 246 (416)
.+++++.++++++.+.|-..+-|-.+.. .+++.+|+..+-+. ..+..|.||....=..+.|+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL 93 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAAL 93 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHH
Confidence 4778899999999999999988887622 45566655444332 13688999975433333433
No 480
>PRK15029 arginine decarboxylase; Provisional
Probab=20.57 E-value=6.4e+02 Score=28.20 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHcCCCE--EEEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCcee
Q 014886 185 VSPAEAAELASKYRKQGFTT--LKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 261 (416)
Q Consensus 185 ~~~~~~~~~~~~~~~~G~~~--~KiKvG~~~~~d~~~v~avr~~-g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~ 261 (416)
.+|+....+++++.++=|.+ --+=++... ......+... .++-++.||=|+.=++-.|+.+ .++.+.|
T Consensus 201 ~~p~G~I~eAq~~aA~~fgA~~t~FlvNGST---~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L------~ga~Pvy 271 (755)
T PRK15029 201 LDHTGAFGESEKYAARVFGADRSWSVVVGTS---GSNRTIMQACMTDNDVVVVDRNCHKSIEQGLIL------TGAKPVY 271 (755)
T ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEeCChh---HHHHHHHHHhcCCCCEEEeecccHHHHHHHHHH------cCCeEEE
Confidence 45666666666666543322 223333222 2222233333 4666899999998776665443 3444568
Q ss_pred eecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHHHHHcCC-C---------CEEEeCCCCCc-hHHHHHHHH
Q 014886 262 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL-A---------DVINIKLAKVG-VLGALEIIE 330 (416)
Q Consensus 262 iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~~i~~~a-~---------d~v~~k~~k~G-i~~~l~i~~ 330 (416)
+ .|.. . ..+++-....+..+++++++.++..- . -++..-++.-| .....++++
T Consensus 272 l-~P~~-~--------------~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~ 335 (755)
T PRK15029 272 M-VPSR-N--------------RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQD 335 (755)
T ss_pred e-cccc-c--------------ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHH
Confidence 8 4422 1 23555555556677888887775421 1 25666788889 668899999
Q ss_pred HHHHcCCcEEEccC
Q 014886 331 VVRASGLNLMIGGM 344 (416)
Q Consensus 331 ~A~~~gi~~~~~~~ 344 (416)
.|+++|+++.+--.
T Consensus 336 ~~h~~~~~llvDEA 349 (755)
T PRK15029 336 LLEKTSDRLHFDEA 349 (755)
T ss_pred HHHhcCCeEEEECc
Confidence 99999999987543
No 481
>PF00608 Adeno_shaft: Adenoviral fibre protein (repeat/shaft region); InterPro: IPR000939 Adenoviruses are responsible for diseases such as pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. Viral infection commences with recognition of host cell receptors by means of specialised proteins on viral surfaces. Specific attachment of adenovirus is achieved through interactions between host-cell receptors and the adenovirus fibre protein and is mediated by the globular carboxy-terminal domain of the adenovirus fibre protein, rather than the 'shaft' region represented by this family. The alignment of this family contains two copies of a fifteen residue repeat found in the 'shaft' region of adenoviral fibre proteins.; GO: 0007155 cell adhesion, 0009405 pathogenesis, 0019062 virion attachment to host cell surface receptor; PDB: 1V1H_A 1QIU_D 1V1I_B.
Probab=20.48 E-value=71 Score=19.69 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=14.1
Q ss_pred CcceeEeCcEEEcCCCCCcccc
Q 014886 381 LDGYEVSGAVYKFTNARGHGGF 402 (416)
Q Consensus 381 ~~~~~~~~G~~~~p~~PGlGie 402 (416)
..++++++|.+.+.-++||-++
T Consensus 9 g~pL~v~n~~L~l~~g~gL~~~ 30 (30)
T PF00608_consen 9 GPPLTVSNNALTLKLGSGLTVD 30 (30)
T ss_dssp -TTEEE-TS-EEE-B-TTEEEE
T ss_pred CCCEEEeCCeEEEeeCCCeecC
Confidence 4578999999999999998763
No 482
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=20.28 E-value=9.2e+02 Score=24.55 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=66.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHH----HhCCCC--ceeeecCCCCCCHHHHHHhHHhhhccCCCeEEeCCCCCCHHHHHH
Q 014886 230 SSFILDANEGYKPQEAVEVLEKL----YEMGVT--PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 303 (416)
Q Consensus 230 ~~L~vDaN~~w~~~~A~~~~~~L----~~~~l~--~~~iEeP~~~~d~~~~~~l~~~~r~~~~iPIa~dEs~~~~~d~~~ 303 (416)
+.+=||+.-+++.++-++-+++| ++.++. -.+|-=|.. ++|++..+..- +-+|++-+- -+++..+...
T Consensus 97 Vs~EVdprl~~d~~~~i~~A~~l~~~~~~~gi~~~~v~IKIPaT---~eGi~A~~~L~--~~GI~~n~T-lvFS~~QA~a 170 (391)
T PRK12309 97 VSTEVDARLSYDTEATIAKARKLISLYEDAGISRDRVLIKIAST---WEGIKAAEVLE--KEGIHCNLT-LLFGFHQAIA 170 (391)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCCC---HHHHHHHHHHH--HCCCceeee-eecCHHHHHH
Confidence 66778988888766555444444 322221 147777766 55665544321 236665542 2789999988
Q ss_pred HHHcCCCCEEEeCCCCC-------------------chHHHHHHHHHHHHcCCcEE
Q 014886 304 IVKGNLADVINIKLAKV-------------------GVLGALEIIEVVRASGLNLM 340 (416)
Q Consensus 304 ~i~~~a~d~v~~k~~k~-------------------Gi~~~l~i~~~A~~~gi~~~ 340 (416)
..+.|+ +++.|=++|+ |+....++..+-+.+|.+..
T Consensus 171 aaeAGa-~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 171 CAEAGV-TLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred HHHcCC-CEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 888884 8887766553 54557788888889887653
No 483
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.03 E-value=7.5e+02 Score=23.37 Aligned_cols=176 Identities=18% Similarity=0.148 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCCCceeeecC
Q 014886 186 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 265 (416)
Q Consensus 186 ~~~~~~~~~~~~~~~G~~~~KiKvG~~~~~d~~~v~avr~~g~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~~~iEeP 265 (416)
+.++..+.++.+.+.|++.+-+-....-+.|.+.++.+++..++.++..=+.. +.+...+.++.....++....+=-|
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~--~~~~v~~a~~~~~~~~~~~i~i~~~ 95 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARA--VKKDIDAAAEALKPAKVDRIHTFIA 95 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccC--CHhhHHHHHHhCCCCCCCEEEEEec
Confidence 66777888888889999988764322124678889999887666666533211 1222222222221111332233334
Q ss_pred CCCC------------CHHHHHHhHHhhhccCCCeEEe---CCCCCCHHHHHH----HHHcCCCCEEEeCCCCCc-hH--
Q 014886 266 VHRD------------DWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKK----IVKGNLADVINIKLAKVG-VL-- 323 (416)
Q Consensus 266 ~~~~------------d~~~~~~l~~~~r~~~~iPIa~---dEs~~~~~d~~~----~i~~~a~d~v~~k~~k~G-i~-- 323 (416)
+++- .++......+..+ +.+..+.. +.+-.+++.+.. +.+.| +|.+.++=+- | .+
T Consensus 96 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~-G~~~P~ 172 (268)
T cd07940 96 TSDIHLKYKLKKTREEVLERAVEAVEYAK-SHGLDVEFSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTV-GYLTPE 172 (268)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCeEEEeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCC-CCCCHH
Confidence 4311 1232223222222 33555553 334456655443 44556 4665554432 5 33
Q ss_pred HHHHHHHHHHH-cC---CcEEEccCCchHHHHHHHHHHHccCCCCceec
Q 014886 324 GALEIIEVVRA-SG---LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 368 (416)
Q Consensus 324 ~~l~i~~~A~~-~g---i~~~~~~~~es~ig~~a~~hlaaa~~~~~~~e 368 (416)
+..++....++ ++ +++.+|+-...+++ .+-.++|.-....++|
T Consensus 173 ~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA--~An~laAi~aG~~~iD 219 (268)
T cd07940 173 EFGELIKKLKENVPNIKVPISVHCHNDLGLA--VANSLAAVEAGARQVE 219 (268)
T ss_pred HHHHHHHHHHHhCCCCceeEEEEecCCcchH--HHHHHHHHHhCCCEEE
Confidence 44555555444 44 78888886544444 3333433322344444
Done!