BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014887
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL
PE=2 SV=2
Length = 358
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/180 (52%), Positives = 118/180 (65%), Gaps = 27/180 (15%)
Query: 35 GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
GDSGLVL+TD KPRL+WT +LHERF++AV QLGG DKATPKT+M++MG+ GLTLYHLKSH
Sbjct: 23 GDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
Query: 95 LQKYRLSKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIG 154
LQK+RL K H + H+ G + + + M N MN
Sbjct: 83 LQKFRLGKQPHKEYG------DHSTKEGSRASAMDIQRNVASSSGMMSRN---MN----- 128
Query: 155 PQPNKSLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNL 214
+MQ+EVQRRLHEQLEVQRHLQLRIEAQGKY+Q++LE+A +TL +N+
Sbjct: 129 -------------EMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLAGENM 175
>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
Length = 413
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 105/163 (64%), Gaps = 27/163 (16%)
Query: 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104
+K R++WTP+LHE F+EAVNQLGG+++ATPK V+KL+ PGLT+YH+KSHLQKYR ++
Sbjct: 230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR-- 287
Query: 105 HGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERMPEANATHMNNLSIGPQPNKSLHIS 164
K ++S V GE E T + ++ S+ I+
Sbjct: 288 ------------------YKPETS-----EVTGEPQ-EKKMTSIEDIK-SLDMKTSVEIT 322
Query: 165 ETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQE 207
+ +++Q+EVQ+RLHEQLE+QR LQL+IE QG+YLQ + EK Q+
Sbjct: 323 QALRLQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQK 365
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis
thaliana GN=At1g14600 PE=2 SV=2
Length = 255
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 47 PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
PRL+WTP+LH F+ AV+ LGG KATPK V+K+M + GLT+ H+KSHLQ YR S+
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSR 79
>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2
PE=2 SV=1
Length = 388
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 47 PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLH- 105
PR++WT LH RF+ AV LGG ++ATPK+V++LM + LTL H+KSHLQ YR K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273
Query: 106 GQANIGNNKIAHTGIGG 122
A+ G + + G G
Sbjct: 274 AAASSGQSDVYENGSSG 290
>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1
SV=1
Length = 403
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 47 PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
PR++WT LH RF+ AV LGG ++ATPK+V++LM + LTL H+KSHLQ YR K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275
>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica
GN=RL9 PE=2 SV=2
Length = 532
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 47 PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103
PR++WT LH RF+ AV LGG ++ATPK+V++LM + LTL H+KSHLQ YR K+
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKS 381
>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4
PE=1 SV=1
Length = 276
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 38 GLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQK 97
GL S A PR++WT LH F+ AV LGG ++ATPK+V++LM + LTL H+KSHLQ
Sbjct: 98 GLKRSIRA-PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 156
Query: 98 YRLSK 102
YR K
Sbjct: 157 YRTVK 161
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 72.4 bits (176), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 35 GDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94
GD S+ KPR+ W+ +LH++F+ AVNQLG DKA PK ++++M +PGLT ++ SH
Sbjct: 205 GDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASH 263
Query: 95 LQKYRL 100
LQKYR+
Sbjct: 264 LQKYRI 269
>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3
PE=2 SV=1
Length = 322
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 47 PRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102
PR++WT LH F+ AV LGG ++ATPK+V++LM + LTL H+KSHLQ YR K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIK 220
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 44/55 (80%), Gaps = 1/55 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
KPR+ W+ +LH++F+ AVNQLG +KA PK +++LM +PGLT ++ SHLQKYR+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS-KNL 104
K R+ W+ +LH++F+ AVN+LG DKA PK +++LM +PGL+ ++ SHLQK+RL K L
Sbjct: 200 KSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258
Query: 105 HGQANIGNN 113
G+A+ N+
Sbjct: 259 SGEASQSND 267
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 29 QGGSGPGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTL 88
Q G G G T KPR+ W+ +LH++F+ AV QLG DKA PK ++ LM I GLT
Sbjct: 184 QDGDGSG-------TRKKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTR 235
Query: 89 YHLKSHLQKYRL 100
++ SHLQKYRL
Sbjct: 236 ENVASHLQKYRL 247
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
K ++ WTP+LH RF++AV QLG DKA P +++LMGI LT +++ SHLQKYR
Sbjct: 215 KVKVDWTPELHRRFVQAVEQLG-IDKAVPSRILELMGIECLTRHNIASHLQKYR 267
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
K ++ WTP+LH RF+EAV QLG DKA P +++LMG+ LT +++ SHLQKYR
Sbjct: 153 KVKVDWTPELHRRFVEAVEQLG-VDKAVPSRILELMGVHCLTRHNVASHLQKYR 205
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 49 LKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
+ WTP+LH RF++AV QLG DKA P ++++MGI LT +++ SHLQKYR
Sbjct: 183 VDWTPELHRRFVQAVEQLG-IDKAVPSRILEIMGIDSLTRHNIASHLQKYR 232
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
KP++ WTP+LH +F++AV QLG DKA P ++++M + LT +++ SHLQKYR
Sbjct: 147 KPKVDWTPELHRKFVQAVEQLG-VDKAVPSRILEIMNVKSLTRHNVASHLQKYR 199
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 33 GPGDSGLVLSTDAKPR-LKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHL 91
GP D G +S AK + ++WT LH+ F++A+ +G DKA PK ++ M +P LT ++
Sbjct: 208 GPSDDGESMSQPAKKKKIQWTDSLHDLFLQAIRHIG-LDKAVPKKILAFMSVPYLTRENV 266
Query: 92 KSHLQKYRL 100
SHLQKYR+
Sbjct: 267 ASHLQKYRI 275
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLM----GIPGLTLYHLKSHLQKYRLS 101
KPR++WTP+LH +F AV ++G +KA PKT++K M + GLT ++ SHLQKYR S
Sbjct: 211 KPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYRQS 270
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
R+ W+ +LH +F+ AVNQ+G KA PK ++ LM +P LT ++ SHLQKYRL
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRL 247
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS-KNL 104
K R+ WT +LH++F+ AVNQLG +KA PK ++ LM + LT ++ SHLQK+RL K +
Sbjct: 195 KQRVVWTVELHKKFVAAVNQLG-YEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKRI 253
Query: 105 HGQAN 109
G AN
Sbjct: 254 SGVAN 258
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKL---MGIPGLTLYHLKSHLQKYR--L 100
KPR+ WT +LH++F+EA+ +GG +KA PK +++ M I G+T ++ SHLQK+R L
Sbjct: 215 KPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKHRINL 274
Query: 101 SKNLHGQANIGNNKIAHTGIGGMKFKSSGVGPVTVPGERM 140
+N Q GN G + S T+P M
Sbjct: 275 EENQIPQQTQGNGWATAYGTLAPSLQGSDNVNTTIPSYLM 314
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
K RL WT LH +FI AVN LG DKA PK ++ +M + LT + SHLQKYR+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYRM 251
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
K RL WT LH +FI AVN LG DKA PK ++ +M + LT + SHLQKYR+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTREQVASHLQKYRM 251
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
++ ++ WTP+LH++F++AV QL G D+A P +++LM + LT +++ SHLQK+R
Sbjct: 295 SRKKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVGTLTRHNVASHLQKFR 348
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
KPR+ WT +LH +F+ AV+ LG ++A PK ++ LM + LT ++ SHLQK+R++
Sbjct: 183 KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 237
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 33 GPGDSGLVLSTD-AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHL 91
GP D G LS K ++ WT L + F++A+ +G DK PK ++ +M +P LT ++
Sbjct: 211 GPSDDGESLSQPPKKKKIWWTNPLQDLFLQAIQHIG-YDKVVPKKILAIMNVPYLTRENV 269
Query: 92 KSHLQKYRL 100
SHLQKYRL
Sbjct: 270 ASHLQKYRL 278
>sp|Q9C9F6|APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis
thaliana GN=APRR6 PE=3 SV=2
Length = 755
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 51 WTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99
W + H +FI A++ LG D PK+++++M P LT + SHLQKY+
Sbjct: 227 WNSERHMKFIAAISILGEED-FRPKSILEIMNDPNLTHRQVGSHLQKYK 274
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101
S+ K R+ W +LH+ F+ AV+ LG ++A PK ++ +M + ++ ++ SHLQ L
Sbjct: 219 SSAKKRRVVWDEELHQNFLNAVDFLG-LERAVPKKILDVMKVDYISRENVASHLQVTFLI 277
Query: 102 KNL 104
N+
Sbjct: 278 YNI 280
>sp|Q3V089|RBM44_MOUSE RNA-binding protein 44 OS=Mus musculus GN=Rbm44 PE=1 SV=1
Length = 1013
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 83 IPGLTLYHLKSHLQKYRLSK-NLHGQANI----------GNNKIAHTGIGGMKF--KSSG 129
P ++ L+SH QKY++S+ +++ N N K+A + G+K KS
Sbjct: 800 CPSVSEADLRSHFQKYQVSEISIYDSTNYRYASLAFAKNSNAKMAVKEMNGVKINGKSVT 859
Query: 130 VGPVTVPGERMP-----EANATHMNNL 151
V V +PGE P N+T MN+L
Sbjct: 860 VRLVKIPGEYTPPPLSTTGNSTSMNHL 886
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 51 WTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
WTP+ H RFIEA+++ G D K++ + + T +++H QKY L
Sbjct: 175 WTPEEHSRFIEALSKYGHKDV---KSISQYVSTRNPT--QVRTHAQKYFL 219
>sp|D3Z987|RBM44_RAT RNA-binding protein 44 OS=Rattus norvegicus GN=Rbm44 PE=3 SV=1
Length = 1020
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 84 PGLTLYHLKSHLQKYRLSKNLHGQANI------------GNNKIAHTGIGGMKF--KSSG 129
P ++ L+SH QKY++S+ +N N K+A + G++ KS
Sbjct: 805 PSVSEADLRSHFQKYQVSEISIYDSNTNYRYASLACAKNSNAKMAVKEMNGVEINGKSVN 864
Query: 130 VGPVTVPGERMPEANATHMNNLSI 153
V V +PGE +P +T NN+S+
Sbjct: 865 VRLVKIPGEYIPPLLSTAGNNISM 888
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98
T K R +WT D HERF+EA+ G A + + + +G T ++SH QK+
Sbjct: 19 TITKQRERWTEDEHERFLEALRLYGRA----WQRIEEHIGTK--TAVQIRSHAQKF 68
>sp|P12844|MYO3_CAEEL Myosin-3 OS=Caenorhabditis elegans GN=myo-3 PE=2 SV=1
Length = 1969
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 177 LHEQLEVQRHLQLRIEAQGKYLQAVLEKAQ-----ETLGRQNLGTAGLEAAKVQLSELVS 231
L EQLE + L+ + EA+ LQ LE++Q E RQ+L A L+ +VQ SEL +
Sbjct: 1216 LTEQLETLQKLKAKSEAEKSKLQRDLEESQHATDSEVRSRQDLEKA-LKTIEVQYSELQT 1274
Query: 232 KVSTQCLNSTFSDLKELQGFCPQQPQAN 259
K Q ++LQ F + + N
Sbjct: 1275 KADEQS--------RQLQDFAALKNRLN 1294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,999,621
Number of Sequences: 539616
Number of extensions: 7063358
Number of successful extensions: 14376
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 14313
Number of HSP's gapped (non-prelim): 79
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)