Query 014887
Match_columns 416
No_of_seqs 212 out of 406
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 09:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 3.7E-25 8E-30 168.0 6.9 51 160-210 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 4.2E-23 9.1E-28 207.2 7.3 62 42-104 231-292 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 2.7E-21 5.9E-26 148.9 6.6 56 46-101 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.1 0.0012 2.7E-08 48.1 5.7 48 48-99 1-48 (48)
5 smart00426 TEA TEA domain. 90.1 0.31 6.8E-06 39.9 3.2 46 50-97 5-67 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 73.5 6.4 0.00014 30.8 4.2 22 175-196 6-27 (51)
7 PF15235 GRIN_C: G protein-reg 69.0 3.5 7.6E-05 37.9 2.2 19 182-200 71-89 (137)
8 PF01285 TEA: TEA/ATTS domain 54.7 15 0.00032 39.0 4.1 54 44-98 45-112 (431)
9 PF12776 Myb_DNA-bind_3: Myb/S 54.0 18 0.00039 29.0 3.6 51 50-100 1-63 (96)
10 smart00501 BRIGHT BRIGHT, ARID 50.0 16 0.00035 29.9 2.8 47 53-100 32-85 (93)
11 cd00167 SANT 'SWI3, ADA2, N-Co 41.1 1.1E+02 0.0023 20.3 5.5 44 50-98 1-44 (45)
12 smart00717 SANT SANT SWI3, AD 38.0 1.1E+02 0.0025 20.4 5.2 44 49-97 2-45 (49)
13 PF01519 DUF16: Protein of unk 36.1 1.9E+02 0.0041 25.7 7.3 28 180-207 65-92 (102)
14 PF07384 DUF1497: Protein of u 33.1 37 0.0008 27.0 2.3 22 49-70 36-57 (59)
15 cd07644 I-BAR_IMD_BAIAP2L2 Inv 32.6 1.9E+02 0.0042 28.6 7.5 41 163-204 66-116 (215)
16 TIGR02894 DNA_bind_RsfA transc 30.6 30 0.00064 32.7 1.6 51 43-99 43-93 (161)
17 KOG1819 FYVE finger-containing 29.6 3.6E+02 0.0078 30.5 9.6 58 46-103 647-719 (990)
18 cd07645 I-BAR_IMD_BAIAP2L1 Inv 24.3 3E+02 0.0065 27.5 7.3 69 161-232 64-141 (226)
19 cd07646 I-BAR_IMD_IRSp53 Inver 23.1 3.1E+02 0.0068 27.5 7.2 69 161-232 66-143 (232)
20 KOG2620 Prohibitins and stomat 22.3 2E+02 0.0044 29.7 5.8 47 161-207 157-209 (301)
21 PF00435 Spectrin: Spectrin re 20.6 3.9E+02 0.0084 20.3 6.2 48 182-232 41-88 (105)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.92 E-value=3.7e-25 Score=167.96 Aligned_cols=51 Identities=75% Similarity=1.086 Sum_probs=48.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Q 014887 160 SLHISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLG 210 (416)
Q Consensus 160 ~~qI~EALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEkAQe~La 210 (416)
+++|+|||++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999864
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.88 E-value=4.2e-23 Score=207.17 Aligned_cols=62 Identities=45% Similarity=0.818 Sum_probs=58.4
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcccC
Q 014887 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (416)
Q Consensus 42 s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~ 104 (416)
...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 34689999999999999999999998 799999999999999999999999999999999753
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.84 E-value=2.7e-21 Score=148.86 Aligned_cols=56 Identities=59% Similarity=0.996 Sum_probs=54.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (416)
|+|++||+|+|++||+||+.||+.+.||||.|+++|++++||..+|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999975
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.14 E-value=0.0012 Score=48.08 Aligned_cols=48 Identities=33% Similarity=0.436 Sum_probs=41.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (416)
|-.||++=++.|++||.++|. + .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999982 1 5899999997 7999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=90.11 E-value=0.31 Score=39.90 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChH-HHHhh--------------hCCCCC--CHHHHHHHhhh
Q 014887 50 KWTPDLHERFIEAVNQLGGADKATPK-TVMKL--------------MGIPGL--TLYHLKSHLQK 97 (416)
Q Consensus 50 rWT~eLH~rFV~AV~~LGG~~kAtPK-~IL~l--------------M~v~gL--T~~hVkSHLQK 97 (416)
+|.++|-..|++|+...- ...+-| .+... ....|. |..+|.||||.
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 699999999999999874 333333 22211 112443 67889999884
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=73.48 E-value=6.4 Score=30.79 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH
Q 014887 175 RRLHEQLEVQRHLQLRIEAQGK 196 (416)
Q Consensus 175 rrLHEQLEVQRhLQLRIEAQGK 196 (416)
--|..|+||||+|.=.+|.|.+
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~ 27 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRH 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777776644
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=69.03 E-value=3.5 Score=37.89 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 014887 182 EVQRHLQLRIEAQGKYLQA 200 (416)
Q Consensus 182 EVQRhLQLRIEAQGKYLQs 200 (416)
-||+||+++||.|+|.+..
T Consensus 71 AIQkHLE~qi~e~~~q~~~ 89 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAP 89 (137)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 5899999999999988754
No 8
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=54.69 E-value=15 Score=39.04 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=29.2
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChH--------------HHHhhhCCCCCCHHHHHHHhhhh
Q 014887 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPK--------------TVMKLMGIPGLTLYHLKSHLQKY 98 (416)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK--------------~IL~lM~v~gLT~~hVkSHLQKY 98 (416)
+.+..-+|++++...|++|+...-=..+++-+ .|...-| +-=|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 35678899999999999999887411112211 1111111 234788999999998
No 9
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=54.02 E-value=18 Score=28.97 Aligned_cols=51 Identities=16% Similarity=0.306 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHHHHHHh---CCC-CCCChH-----HHHhhhCC---CCCCHHHHHHHhhhhhh
Q 014887 50 KWTPDLHERFIEAVNQL---GGA-DKATPK-----TVMKLMGI---PGLTLYHLKSHLQKYRL 100 (416)
Q Consensus 50 rWT~eLH~rFV~AV~~L---GG~-~kAtPK-----~IL~lM~v---~gLT~~hVkSHLQKYRl 100 (416)
+||++..+.||+.+-+. |.- .....| .|.+.|+- -.+|..+|++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988443 433 233333 34554443 34688999999875443
No 10
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=50.03 E-value=16 Score=29.92 Aligned_cols=47 Identities=32% Similarity=0.509 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCC----hHHHHhhhCCCCC---CHHHHHHHhhhhhh
Q 014887 53 PDLHERFIEAVNQLGGADKAT----PKTVMKLMGIPGL---TLYHLKSHLQKYRL 100 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAt----PK~IL~lM~v~gL---T~~hVkSHLQKYRl 100 (416)
-+|++.|. +|..+||.+..+ =+.|.+.||++.- ...+||+|-+||-+
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 47999998 599999987654 3578899999752 35678888888854
No 11
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=41.08 E-value=1.1e+02 Score=20.34 Aligned_cols=44 Identities=25% Similarity=0.428 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhh
Q 014887 50 KWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (416)
Q Consensus 50 rWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (416)
.||++=+..|+.++..+|- ..-+.|-+.| ++=|...|+.+..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~--~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKEL--PGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHc--CCCCHHHHHHHHHHh
Confidence 4999999999999999982 2356677776 446777888776543
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=38.04 E-value=1.1e+02 Score=20.39 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=32.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhh
Q 014887 49 LKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQK 97 (416)
Q Consensus 49 lrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQK 97 (416)
-.||++=...|+.+|.++| . ..=+.|-..|+ +=|...|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999998 2 22456666664 6777777776544
No 13
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=36.10 E-value=1.9e+02 Score=25.71 Aligned_cols=28 Identities=43% Similarity=0.458 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014887 180 QLEVQRHLQLRIEAQGKYLQAVLEKAQE 207 (416)
Q Consensus 180 QLEVQRhLQLRIEAQGKYLQsiLEkAQe 207 (416)
|=|.-+.||.+|.+||+-|++|++.-+.
T Consensus 65 QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 65 QGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445578999999999999999876443
No 14
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=33.13 E-value=37 Score=27.02 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCC
Q 014887 49 LKWTPDLHERFIEAVNQLGGAD 70 (416)
Q Consensus 49 lrWT~eLH~rFV~AV~~LGG~~ 70 (416)
-++..|+|..|-+-|..|||.+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4588999999999999999864
No 15
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=32.61 E-value=1.9e+02 Score=28.64 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=26.7
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHH
Q 014887 163 ISETIQMQI-EVQRRLHEQLEVQ---------RHLQLRIEAQGKYLQAVLEK 204 (416)
Q Consensus 163 I~EALqmQm-EVQrrLHEQLEVQ---------RhLQLRIEAQGKYLQsiLEk 204 (416)
+.++| ||| ||||+|+.|||+. .+|.-..|---|||+.-+.+
T Consensus 66 LG~vL-mqisev~r~i~~~le~~lk~FH~ell~~LEkk~elD~kyi~~s~Kk 116 (215)
T cd07644 66 LGEIL-IQMSETQRKLSADLEVVFQTFHVDLLQHMDKNTKLDMQFIEDSRRV 116 (215)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55665 555 9999999999843 34555555556666655433
No 16
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.61 E-value=30 Score=32.74 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=38.2
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (416)
Q Consensus 43 ~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (416)
|.....+||+..+-..+.+||...- -.+-.++.. ...||+..|-+-||.|.
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~ 93 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLK 93 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHH
Confidence 4567899999999999999998753 122222211 25699999999999987
No 17
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=29.61 E-value=3.6e+02 Score=30.46 Aligned_cols=58 Identities=29% Similarity=0.489 Sum_probs=28.6
Q ss_pred CCCccC--CHH-HHHHHHHHH---HHhCCCCCCChHHHHh---hhCCC----CCCH--HHHHHHhhhhhhccc
Q 014887 46 KPRLKW--TPD-LHERFIEAV---NQLGGADKATPKTVMK---LMGIP----GLTL--YHLKSHLQKYRLSKN 103 (416)
Q Consensus 46 KpRlrW--T~e-LH~rFV~AV---~~LGG~~kAtPK~IL~---lM~v~----gLT~--~hVkSHLQKYRl~k~ 103 (416)
+.||++ |.+ ||+.||... .+|---...--.+||+ +|++. .+.+ .--.|-|=.||...+
T Consensus 647 ~arlkfksse~llhrlfvciagvadqlqtnfasdirkilksvflmnmstaqeeidipektkeselfefrasen 719 (990)
T KOG1819|consen 647 RARLKFKSSEDLLHRLFVCIAGVADQLQTNFASDIRKILKSVFLMNMSTAQEEIDIPEKTKESELFEFRASEN 719 (990)
T ss_pred hhhhccccHHHHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHhhccchhhhhcccccccchhhhhhhhcccc
Confidence 344444 444 799998642 3332111112345655 56651 2221 223577888887653
No 18
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=24.30 E-value=3e+02 Score=27.54 Aligned_cols=69 Identities=20% Similarity=0.355 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHHHHHHHHHhccccCCCcchhHHHHhhHHHHH
Q 014887 161 LHISETIQMQIEVQRRLHEQLE---------VQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVS 231 (416)
Q Consensus 161 ~qI~EALqmQmEVQrrLHEQLE---------VQRhLQLRIEAQGKYLQsiLEkAQe~La~~~~~~~gleaak~qLseL~s 231 (416)
..|.++|--=-||+|+++.||| +-..|.-.+|..-||+...+.+=|.- +-.-..++|-+.++|--+-.
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E---~k~k~dsLeK~~seLKK~RR 140 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTE---HKNKLDSLEKSQADLKKIRR 140 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 3466776444599999999887 44578899999999999877664332 33334567777777666655
Q ss_pred h
Q 014887 232 K 232 (416)
Q Consensus 232 ~ 232 (416)
+
T Consensus 141 K 141 (226)
T cd07645 141 K 141 (226)
T ss_pred c
Confidence 4
No 19
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=23.14 E-value=3.1e+02 Score=27.47 Aligned_cols=69 Identities=28% Similarity=0.422 Sum_probs=47.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHhccccCCCcchhHHHHhhHHHHH
Q 014887 161 LHISETIQMQIEVQRRLHEQLEV---------QRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVS 231 (416)
Q Consensus 161 ~qI~EALqmQmEVQrrLHEQLEV---------QRhLQLRIEAQGKYLQsiLEkAQe~La~~~~~~~gleaak~qLseL~s 231 (416)
..|.+||.==-||+|.++.+||+ -..|+-++|..-|||...+.+=|-- +-.-..+++-++++|-.|-.
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~~e---~k~k~~sleK~qseLKKlRr 142 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQTE---HRSKGESLEKCQAELKKLRK 142 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34667775445788888777773 3579999999999999876664332 22334567777777777654
Q ss_pred h
Q 014887 232 K 232 (416)
Q Consensus 232 ~ 232 (416)
+
T Consensus 143 K 143 (232)
T cd07646 143 K 143 (232)
T ss_pred h
Confidence 4
No 20
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=22.33 E-value=2e+02 Score=29.67 Aligned_cols=47 Identities=23% Similarity=0.222 Sum_probs=37.4
Q ss_pred cchhHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHhhHHHHHHHHHHHH
Q 014887 161 LHISETIQMQIEVQRRLHEQL---EVQRHLQLRI---EAQGKYLQAVLEKAQE 207 (416)
Q Consensus 161 ~qI~EALqmQmEVQrrLHEQL---EVQRhLQLRI---EAQGKYLQsiLEkAQe 207 (416)
-++.+|.+||-|.+|+=.-++ |--|.+|+.+ |++.|||.++=.++|.
T Consensus 157 ~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr 209 (301)
T KOG2620|consen 157 PSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQR 209 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHH
Confidence 468899999999998866664 3678888876 6889999988777665
No 21
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=20.56 E-value=3.9e+02 Score=20.26 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCCCcchhHHHHhhHHHHHh
Q 014887 182 EVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSK 232 (416)
Q Consensus 182 EVQRhLQLRIEAQGKYLQsiLEkAQe~La~~~~~~~gleaak~qLseL~s~ 232 (416)
.-.+.++--|.....-|..|.+.|+...... +.....-+..+.+|...
T Consensus 41 ~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~---~~~~~~i~~~~~~l~~~ 88 (105)
T PF00435_consen 41 KKHKELQEEIESRQERLESLNEQAQQLIDSG---PEDSDEIQEKLEELNQR 88 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HTTHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHH
Confidence 3445566666777777888888877764432 33344555555555543
Done!