Query 014887
Match_columns 416
No_of_seqs 212 out of 406
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 19:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1E-28 3.5E-33 193.5 7.2 61 42-103 1-61 (64)
2 2yus_A SWI/SNF-related matrix- 88.8 1.6 5.4E-05 34.7 7.5 48 46-99 16-63 (79)
3 2yum_A ZZZ3 protein, zinc fing 86.7 2 7E-05 32.8 6.8 54 46-102 6-62 (75)
4 2cu7_A KIAA1915 protein; nucle 85.9 2.2 7.5E-05 32.6 6.6 51 46-102 7-57 (72)
5 2hzd_A Transcriptional enhance 84.1 1 3.4E-05 36.9 4.1 56 45-102 3-75 (82)
6 1x41_A Transcriptional adaptor 79.1 2.6 9E-05 31.2 4.5 50 46-100 6-55 (60)
7 2iw5_B Protein corest, REST co 74.7 4.7 0.00016 38.6 6.0 55 43-103 128-182 (235)
8 2xag_B REST corepressor 1; ami 74.6 4.7 0.00016 42.0 6.4 53 46-104 378-430 (482)
9 2cqq_A RSGI RUH-037, DNAJ homo 72.9 10 0.00035 29.7 6.6 48 48-101 8-58 (72)
10 2ba2_A D12_ORF131, hypothetica 63.9 21 0.0007 29.5 6.8 42 163-207 34-75 (85)
11 3sjm_A Telomeric repeat-bindin 61.5 23 0.0008 26.7 6.4 51 42-95 5-55 (64)
12 2elk_A SPCC24B10.08C protein; 61.1 11 0.00038 27.7 4.4 47 48-99 9-56 (58)
13 1ity_A TRF1; helix-turn-helix, 55.0 46 0.0016 24.9 7.1 55 44-101 6-60 (69)
14 2cqr_A RSGI RUH-043, DNAJ homo 54.4 57 0.0019 25.5 7.7 50 48-100 18-68 (73)
15 3uun_A Dystrophin; triple heli 51.2 42 0.0014 25.9 6.5 55 178-232 39-93 (119)
16 2d9a_A B-MYB, MYB-related prot 49.8 22 0.00077 25.8 4.5 49 45-98 5-53 (60)
17 3uul_A Utrophin; spectrin repe 49.3 48 0.0016 25.6 6.6 55 179-233 40-94 (118)
18 1guu_A C-MYB, MYB proto-oncoge 47.5 49 0.0017 23.2 5.8 46 48-98 3-48 (52)
19 2kes_A Synphilin-1; synphillin 45.4 17 0.0006 26.9 3.1 24 172-195 15-42 (48)
20 2yqk_A Arginine-glutamic acid 44.6 22 0.00074 26.8 3.7 45 45-94 6-50 (63)
21 2eqr_A N-COR1, N-COR, nuclear 37.8 28 0.00097 25.8 3.4 45 44-94 8-52 (61)
22 1gvd_A MYB proto-oncogene prot 34.1 1.1E+02 0.0038 21.4 5.9 47 48-99 3-49 (52)
23 2li6_A SWI/SNF chromatin-remod 32.6 10 0.00036 31.5 0.3 46 53-101 49-98 (116)
24 2dim_A Cell division cycle 5-l 32.0 1.5E+02 0.0053 21.9 6.8 49 46-99 7-55 (70)
25 3ok8_A Brain-specific angiogen 31.6 1.3E+02 0.0044 28.4 7.5 42 162-203 72-122 (222)
26 2da3_A Alpha-fetoprotein enhan 31.0 99 0.0034 23.2 5.6 59 41-102 14-72 (80)
27 2lm1_A Lysine-specific demethy 30.1 24 0.00081 28.6 2.0 47 53-100 44-96 (107)
28 1w0t_A Telomeric repeat bindin 30.0 1.3E+02 0.0045 21.2 5.8 48 48-98 2-49 (53)
29 1wgx_A KIAA1903 protein; MYB D 29.2 95 0.0033 24.5 5.3 47 50-99 10-57 (73)
30 2cjj_A Radialis; plant develop 28.5 1.1E+02 0.0039 24.8 5.8 48 49-101 9-59 (93)
31 2crg_A Metastasis associated p 26.6 60 0.002 24.9 3.6 47 44-95 4-50 (70)
32 1c20_A DEAD ringer protein; DN 26.0 30 0.001 29.1 2.0 48 53-101 52-106 (128)
33 2eqy_A RBP2 like, jumonji, at 25.5 34 0.0012 28.8 2.2 48 53-101 42-95 (122)
34 2cxy_A BAF250B subunit, HBAF25 24.9 31 0.0011 29.0 1.9 48 53-101 51-104 (125)
35 1kkx_A Transcription regulator 24.5 21 0.00073 30.3 0.8 46 53-101 48-97 (123)
36 2jrz_A Histone demethylase jar 23.9 32 0.0011 28.7 1.8 48 53-101 40-93 (117)
37 2jxj_A Histone demethylase jar 23.3 32 0.0011 27.3 1.6 46 53-99 36-87 (96)
38 2kk0_A AT-rich interactive dom 20.8 51 0.0018 28.5 2.5 48 53-101 64-118 (145)
39 1ig6_A MRF-2, modulator recogn 20.3 28 0.00097 28.3 0.7 48 53-101 33-87 (107)
40 4fla_A Regulation of nuclear P 20.0 2.4E+02 0.0083 24.8 6.7 68 162-229 76-143 (152)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=1e-28 Score=193.50 Aligned_cols=61 Identities=41% Similarity=0.810 Sum_probs=57.8
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhccc
Q 014887 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103 (416)
Q Consensus 42 s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~ 103 (416)
++.+|||++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+...
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998 79999999999999999999999999999999753
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.78 E-value=1.6 Score=34.69 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (416)
..+-.||+|=+.+|++||...|+ .=+.|-+.| ++=|..+++.|-++|-
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLP 63 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhc
Confidence 34678999999999999999993 346677776 5799999999998873
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.68 E-value=2 Score=32.83 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=41.5
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChH---HHHhhhCCCCCCHHHHHHHhhhhhhcc
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (416)
..+=.||+|=+++|++||..+| .+...|. .|-+.| +|=|-.+|+.|-|+|-...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 3455899999999999999998 3332233 555555 7899999999999997653
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.85 E-value=2.2 Score=32.63 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=41.8
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcc
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (416)
..+-.||+|=++.|+++|..+|- .=..|-+.| +|=|-.+|+.|.++|-..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 34668999999999999999982 445666665 8999999999999986554
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=84.05 E-value=1 Score=36.95 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=36.6
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhh---h-C-------------CCCCCHHHHHHHhhhhhhcc
Q 014887 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKL---M-G-------------IPGLTLYHLKSHLQKYRLSK 102 (416)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l---M-~-------------v~gLT~~hVkSHLQKYRl~k 102 (416)
.+..=+|.++|-..|++|+...- +. -+-|-+|.. | | -+-=|..+|.||||.-|..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 34566899999999999999885 11 122222211 1 1 03347889999999877654
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=79.06 E-value=2.6 Score=31.18 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=39.8
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhh
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 100 (416)
-.+-.||+|=.+++++||..+| . ..=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 3466799999999999999998 2 1235666666 78899999999988854
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=74.70 E-value=4.7 Score=38.61 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhccc
Q 014887 43 TDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKN 103 (416)
Q Consensus 43 ~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~ 103 (416)
+..+..-+||+|=++.|++|+...| - .=..|-++ |++=|..+|++|..+||....
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYG-K---DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYG-R---DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHS-S---CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHC-c---CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 3346677999999999999999998 2 25667666 478999999999999986543
No 8
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=74.59 E-value=4.7 Score=41.96 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=43.9
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcccC
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNL 104 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k~~ 104 (416)
+..-+||++=|..|++||.+.|- .=+.|-+.++- =|..+|++|.++||....+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 45689999999999999999982 46677777665 4999999999999976544
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=72.93 E-value=10 Score=29.67 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=37.9
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChH---HHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLS 101 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (416)
.-.||.|=+.+|+.|+..+++ -||. .|-..| |=|..+|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 346999999999999999973 3565 455666 57999999998887544
No 10
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=63.85 E-value=21 Score=29.54 Aligned_cols=42 Identities=36% Similarity=0.419 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 014887 163 ISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQE 207 (416)
Q Consensus 163 I~EALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEkAQe 207 (416)
|.+.|..|-|-=+.--||| +.||+-+.|||+-|+.||+--+.
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777877765444444444 88999999999999999875443
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=61.51 E-value=23 Score=26.72 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=35.9
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHh
Q 014887 42 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (416)
Q Consensus 42 s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 95 (416)
++..+.|-.||+|=-++.+++|.+.|. -.=+.|.+.+...|=|-.+++-.-
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 344456778999999999999999982 124577777777787887777543
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=61.14 E-value=11 Score=27.68 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=36.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCC-CCCHHHHHHHhhhhh
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIP-GLTLYHLKSHLQKYR 99 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~-gLT~~hVkSHLQKYR 99 (416)
+-.||++=.+++++||.+.| . ..=+.|-+.| + |=|-.+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~--~~W~~IA~~~--~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-L--GNWADIADYV--GNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-T--TCHHHHHHHH--CSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHH--CCCCCHHHHHHHHHHHc
Confidence 44699999999999999998 1 1234565666 4 678899998888774
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=54.97 E-value=46 Score=24.89 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=42.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLS 101 (416)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (416)
.+++|-.||+|=-++.+++|..+| . -.=+.|...|+..|=|-.+++-+-..|-..
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYG-E--GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHC-S--SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-C--CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 457788999999999999999998 1 134677777754478888888877766433
No 14
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=54.38 E-value=57 Score=25.49 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=38.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhh-hCCCCCCHHHHHHHhhhhhh
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKL-MGIPGLTLYHLKSHLQKYRL 100 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l-M~v~gLT~~hVkSHLQKYRl 100 (416)
+-.||++=..+|++||..+| . -+|..--++ .-|||=|-.+|+.|-+.+.-
T Consensus 18 ~~~WT~eEd~~L~~al~~~g-~--~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYP-R--GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSC-S--SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44699999999999999998 2 267644332 23489999999999887753
No 15
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=51.21 E-value=42 Score=25.88 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCCCcchhHHHHhhHHHHHh
Q 014887 178 HEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSK 232 (416)
Q Consensus 178 HEQLEVQRhLQLRIEAQGKYLQsiLEkAQe~La~~~~~~~gleaak~qLseL~s~ 232 (416)
..||+-.+.|+--|+++..-+.+|.+.+++-+.....++.....-+..|.+|...
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSR 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3444556777788889999999999999988765443333333345555555543
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=49.84 E-value=22 Score=25.80 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=37.6
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhh
Q 014887 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (416)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (416)
...|-.||+|=.++++++|.++| . -.=..|-+.| +|=|-.+++.+-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG-Q--QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC-T--TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-C--CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 45577899999999999999998 1 1234565555 688888888887766
No 17
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.30 E-value=48 Score=25.64 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCCCcchhHHHHhhHHHHHhh
Q 014887 179 EQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSELVSKV 233 (416)
Q Consensus 179 EQLEVQRhLQLRIEAQGKYLQsiLEkAQe~La~~~~~~~gleaak~qLseL~s~v 233 (416)
+||+-.+.|+--|+++..-+.+|.+.|++.+.....++.....-+..|.+|...-
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw 94 (118)
T 3uul_A 40 EQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARW 94 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Confidence 3445556777788899999999999999887654333333334456666665543
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=47.52 E-value=49 Score=23.20 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=36.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhh
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (416)
+-.||+|=.++++++|...|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 2345666665 688888888887766
No 19
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=45.37 E-value=17 Score=26.88 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=17.6
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhh
Q 014887 172 EVQRRLHEQ----LEVQRHLQLRIEAQG 195 (416)
Q Consensus 172 EVQrrLHEQ----LEVQRhLQLRIEAQG 195 (416)
.+-|.|+|| +-+|.+||.-+|+|-
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456778887 457888888877763
No 20
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.62 E-value=22 Score=26.77 Aligned_cols=45 Identities=22% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHH
Q 014887 45 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94 (416)
Q Consensus 45 ~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSH 94 (416)
...+-.||++=|+.|.+|+...| -+ =..|-+.| |+.-|..+|..+
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence 34567899999999999999998 22 23444311 566777777543
No 21
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.82 E-value=28 Score=25.77 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=34.0
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHH
Q 014887 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSH 94 (416)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSH 94 (416)
.++..-.||++=|+.|++|+.+.| . .=..|-.. ||+=|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 456678999999999999999997 2 23455544 478888887654
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=34.14 E-value=1.1e+02 Score=21.38 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=35.5
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (416)
+-.||+|=.++++++|.+.|- ..=..|-..| +|=|-.+++.|-..|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 457999999999999999982 1234555555 6888888888877663
No 23
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=32.56 E-value=10 Score=31.54 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGLTLYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (416)
-+|+..|.. |..+||.++.+. +.|.+.||++. -..|+.|-.||=+.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 98 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHH
Confidence 478888875 788999987664 37889999987 57788887777544
No 24
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.04 E-value=1.5e+02 Score=21.94 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhh
Q 014887 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYR 99 (416)
Q Consensus 46 KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 99 (416)
..|=.||+|=.++++++|...| . ..=+.|-..| +|=|-.+++-+-..|-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~l--~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYG-K--NQWSRIASLL--HRKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTC-S--SCHHHHHHHS--TTCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHh--cCCCHHHHHHHHHHHc
Confidence 4566899999999999999998 1 2346677776 4888899988877763
No 25
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=31.63 E-value=1.3e+02 Score=28.39 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhHHHHHHHH
Q 014887 162 HISETIQMQIEVQRRLHEQLE---------VQRHLQLRIEAQGKYLQAVLE 203 (416)
Q Consensus 162 qI~EALqmQmEVQrrLHEQLE---------VQRhLQLRIEAQGKYLQsiLE 203 (416)
.|.+||.-=-|+||+|..+|| +-..|+.+||.-.||++..+.
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467887555589999999987 356899999999999986543
No 26
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=31.03 E-value=99 Score=23.17 Aligned_cols=59 Identities=19% Similarity=0.171 Sum_probs=38.8
Q ss_pred ccCCCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhhhhcc
Q 014887 41 LSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSK 102 (416)
Q Consensus 41 ~s~~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~k 102 (416)
....+++|.++|++-- ..++++.... ...++..+.++...-|||..+|+.=.|.-|...
T Consensus 14 ~~~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 72 (80)
T 2da3_A 14 PQRDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARE 72 (80)
T ss_dssp CCCCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhH
Confidence 4456678888888743 3344444443 355666666665556899999999888877653
No 27
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=30.13 E-value=24 Score=28.64 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCChH----HHHhhhCCCCCC--HHHHHHHhhhhhh
Q 014887 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRL 100 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl 100 (416)
-+|+..|.. |..+||.++.+-+ .|.+.||+|.-| ...|+.|-.||=+
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 479998876 7789999877643 678899997632 3456776666643
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=29.99 E-value=1.3e+02 Score=21.16 Aligned_cols=48 Identities=15% Similarity=0.181 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHhhhh
Q 014887 48 RLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKY 98 (416)
Q Consensus 48 RlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 98 (416)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999982 134567777754467777777655444
No 29
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=29.15 E-value=95 Score=24.54 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCChHHHHhh-hCCCCCCHHHHHHHhhhhh
Q 014887 50 KWTPDLHERFIEAVNQLGGADKATPKTVMKL-MGIPGLTLYHLKSHLQKYR 99 (416)
Q Consensus 50 rWT~eLH~rFV~AV~~LGG~~kAtPK~IL~l-M~v~gLT~~hVkSHLQKYR 99 (416)
.||.+=..+|.+|+..++ +.+|-.--++ .-|+|=|.+.|+.|-+...
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 599999999999999985 3478755432 3468899999998866553
No 30
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=28.53 E-value=1.1e+02 Score=24.83 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=37.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCChH---HHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887 49 LKWTPDLHERFIEAVNQLGGADKATPK---TVMKLMGIPGLTLYHLKSHLQKYRLS 101 (416)
Q Consensus 49 lrWT~eLH~rFV~AV~~LGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (416)
-.||+|=...|++||..+| .+ +|. .|-..| ||=|-.+|+.|-+++.-.
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~~--~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-KD--TPDRWANVARAV--EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-TT--CTTHHHHHHHHS--TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 3699999999999999997 22 554 455554 799999999999887543
No 31
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=26.58 E-value=60 Score=24.91 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=33.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCChHHHHhhhCCCCCCHHHHHHHh
Q 014887 44 DAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHL 95 (416)
Q Consensus 44 ~~KpRlrWT~eLH~rFV~AV~~LGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 95 (416)
.++..-.||++=++.|.+|+...| -+ =..|-+.| |++-|...|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 346667899999999999999998 22 23444311 5777877776554
No 32
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=26.00 E-value=30 Score=29.13 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCC-C--HHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (416)
-+|+..|.. |..+||.++.+- +.|.+.||++.- | ...|+.|-.||-+.
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 479998876 788999987664 367889999752 2 46678877777544
No 33
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.53 E-value=34 Score=28.77 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCChH----HHHhhhCCCCCC--HHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (416)
-+|++.|.. |..+||.++.+-+ .|.+.||++.-+ ...|+.|-.||-+.
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 478888875 8899998876643 678899997533 24677777777544
No 34
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=24.90 E-value=31 Score=28.99 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCCC--HHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (416)
-+|++.|.. |..+||.++.+- +.|.+.||++.-| ...|+.|-.||-+.
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 478888876 789999987664 3678899998642 34566666666443
No 35
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=24.47 E-value=21 Score=30.27 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCCCHHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGLTLYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl~ 101 (416)
-+|++.|.. |..+||.++.+. +.|.+.|++|. -..|+.|-.||-+.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 468887765 899999988775 36788999987 67788887777665
No 36
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=23.90 E-value=32 Score=28.68 Aligned_cols=48 Identities=21% Similarity=0.151 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCChH----HHHhhhCCCCCC--HHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATPK----TVMKLMGIPGLT--LYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYRl~ 101 (416)
-+|++.|.. |..+||.++.+-+ .|.+.||++.-| ...|+.|-.||-+.
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 378888876 7889999876643 678899997433 35677777776443
No 37
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=23.27 E-value=32 Score=27.32 Aligned_cols=46 Identities=26% Similarity=0.125 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCCC--HHHHHHHhhhhh
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGLT--LYHLKSHLQKYR 99 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYR 99 (416)
-+|+..|.. |..+||.++.+- +.|.+.|+++.-+ ...|+.|-.||=
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L 87 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERIL 87 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 367888875 788999987664 3678899986532 345666666653
No 38
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.75 E-value=51 Score=28.50 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCCC-C--HHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPGL-T--LYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKYRl~ 101 (416)
-+|+..|.. |..+||.++.+- +.|.+.||++.- | ...|+.|-.||-+.
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 478888876 789999987764 367889999762 1 45677777776443
No 39
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=20.32 E-value=28 Score=28.30 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhhCCCC-CC--HHHHHHHhhhhhhc
Q 014887 53 PDLHERFIEAVNQLGGADKATP----KTVMKLMGIPG-LT--LYHLKSHLQKYRLS 101 (416)
Q Consensus 53 ~eLH~rFV~AV~~LGG~~kAtP----K~IL~lM~v~g-LT--~~hVkSHLQKYRl~ 101 (416)
-+|+..|.. |..+||.++.+- +.|.+.||++. .| -..|++|-.||-+.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 478888875 789999987765 36788999864 22 25678877777543
No 40
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=20.03 E-value=2.4e+02 Score=24.80 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccccCCCcchhHHHHhhHHH
Q 014887 162 HISETIQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGTAGLEAAKVQLSEL 229 (416)
Q Consensus 162 qI~EALqmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsiLEkAQe~La~~~~~~~gleaak~qLseL 229 (416)
.|.||..+--|-..||-.+++=.+.|.--+++=-.|.+..|.+|.+.+-.+..-..-+...+.+|...
T Consensus 76 ~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~h 143 (152)
T 4fla_A 76 TVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSH 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999988999899999999998888765533223344444444443
Done!