Query 014889
Match_columns 416
No_of_seqs 209 out of 906
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014889.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014889hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 1.4E-74 3E-79 570.4 17.7 351 49-412 137-493 (549)
2 COG4299 Uncharacterized protei 100.0 5.1E-56 1.1E-60 425.6 21.6 289 53-412 5-297 (371)
3 PF07786 DUF1624: Protein of u 99.9 6.5E-21 1.4E-25 180.4 17.6 189 55-339 1-194 (223)
4 COG3503 Predicted membrane pro 99.7 1.4E-16 3.1E-21 156.2 18.6 137 54-216 14-155 (323)
5 COG2311 Predicted membrane pro 99.3 1.2E-11 2.7E-16 126.7 12.7 140 47-217 4-159 (394)
6 PRK10835 hypothetical protein; 98.8 3.4E-08 7.4E-13 101.4 12.1 100 59-184 1-116 (373)
7 PF10129 OpgC_C: OpgC protein; 98.3 0.0001 2.2E-09 75.7 21.5 81 55-139 1-84 (358)
8 COG4645 Uncharacterized protei 98.2 0.00042 9.2E-09 70.1 21.3 97 41-141 9-111 (410)
9 PF01757 Acyl_transf_3: Acyltr 97.8 0.0039 8.4E-08 58.9 19.2 53 57-110 2-61 (340)
10 PF06423 GWT1: GWT1; InterPro 97.6 0.00038 8.1E-09 62.2 9.8 90 307-396 3-101 (136)
11 PRK03854 opgC glucans biosynth 96.9 0.0041 8.9E-08 63.5 8.9 89 51-140 4-101 (375)
12 COG3274 Predicted O-acyltransf 95.7 1.4 3.1E-05 44.8 18.9 57 53-109 2-65 (332)
13 COG1835 Predicted acyltransfer 92.3 0.092 2E-06 53.8 2.7 67 49-119 8-74 (386)
14 COG5062 Uncharacterized membra 89.9 2.6 5.6E-05 43.6 10.2 226 54-380 109-340 (429)
15 COG3594 NolL Fucose 4-O-acetyl 81.4 2 4.4E-05 44.1 4.6 50 53-108 2-54 (343)
16 PF15345 TMEM51: Transmembrane 76.7 2.6 5.6E-05 41.1 3.5 54 343-396 9-85 (233)
17 PF05857 TraX: TraX protein; 48.4 2.4E+02 0.0052 26.6 12.2 64 58-133 2-65 (219)
18 TIGR02230 ATPase_gene1 F0F1-AT 46.7 37 0.0008 29.1 4.6 27 306-332 40-68 (100)
19 PRK05771 V-type ATP synthase s 37.5 84 0.0018 34.9 6.9 24 345-368 398-422 (646)
20 PF11255 DUF3054: Protein of u 33.4 2.6E+02 0.0056 24.3 7.8 76 305-387 24-106 (112)
21 PF00510 COX3: Cytochrome c ox 27.3 2.3E+02 0.005 27.7 7.4 73 305-378 121-199 (258)
22 COG4763 Predicted membrane pro 24.2 28 0.0006 35.7 0.2 59 48-109 14-76 (388)
23 PF11023 DUF2614: Protein of u 22.5 2.8E+02 0.0061 24.4 6.0 61 337-397 5-65 (114)
24 PF02656 DUF202: Domain of unk 22.5 3.7E+02 0.0079 20.7 7.0 23 336-358 6-28 (73)
25 PF13828 DUF4190: Domain of un 21.9 1.7E+02 0.0036 22.8 4.1 50 309-358 9-59 (62)
26 PF05628 Borrelia_P13: Borreli 21.8 2E+02 0.0044 26.0 5.2 80 306-385 6-85 (135)
27 PF04235 DUF418: Protein of un 21.7 1E+02 0.0022 27.6 3.4 79 329-408 6-90 (163)
28 PRK12585 putative monovalent c 21.5 2.9E+02 0.0064 26.5 6.4 20 160-179 28-56 (197)
29 PF11457 DUF3021: Protein of u 21.5 5.3E+02 0.011 22.2 8.3 65 306-376 40-109 (136)
30 cd02862 NorE_like NorE_like su 20.9 5.1E+02 0.011 23.8 8.0 68 310-377 52-128 (186)
31 PF07694 5TM-5TMR_LYT: 5TMR of 20.2 5E+02 0.011 22.9 7.6 40 310-350 83-122 (169)
32 PRK10663 cytochrome o ubiquino 20.2 5E+02 0.011 24.6 7.9 65 314-378 71-144 (204)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-74 Score=570.43 Aligned_cols=351 Identities=48% Similarity=0.784 Sum_probs=306.8
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHhccccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHH
Q 014889 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAIL 128 (416)
Q Consensus 49 ~~~~~~Ri~sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~~~~~~i~r 128 (416)
-+++++|+.|+|++||+++++||+||..|+.++..+|++|||.+++|+++|+|+|++|+|+++|+++...|....||.--
T Consensus 137 la~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmPfFLfIvGVsials~K~~s~rf~a~rKa~~ 216 (549)
T KOG4683|consen 137 LATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMPFFLFIVGVSIALSVKSQSSRFSATRKAKA 216 (549)
T ss_pred cCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHhHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccchHhhHHHHHHHHHHHHHHHHHHHhhcCCCCc-cc---hhhhhhhhHHHH
Q 014889 129 RALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVS-SK---LSLFRKYRGHWV 204 (416)
Q Consensus 129 R~l~L~~iGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~yli~all~l~~~~~~~~~-~~---~~~~~~~~~~~i 204 (416)
|..+|++.|+++++.+.|+++++|++.|.+++|++|||||+|++|+++|++..+..+..+.. +. ..+..-......
T Consensus 217 R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~~~~~~~~~~~~~S~~R~V~~~~L~~~~~~ 296 (549)
T KOG4683|consen 217 RICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAILHTLCCRPISPQRSWQRAVHDVCLFSGELA 296 (549)
T ss_pred HHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHHhhhccCCCccccchhhhhhHHHHHHHHHH
Confidence 99999999999998888888889999999999999999999999999999987764311111 11 111111111112
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCccCCCCCCcccccccccCCCCC-CCCCHHHHHHHHhhccccccccccccccccc
Q 014889 205 VALVLTTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTG-PACNAVGMIDRKILGIQHLYRKPIYSRTKQC 283 (416)
Q Consensus 205 ~~~~ll~~y~~l~~~l~vP~~~~~~p~~gp~~~~~~~~~~~g~~g~~~-~~~n~a~~iDr~vlg~~Hly~~~~~~~~~~~ 283 (416)
+-..++.-|..++|+..+|+||-++ +||| |.+|-.. |.||++||.||+++|.+|+||+|+++++|+|
T Consensus 297 ~~~~~V~~~~~~~~~~~~~~~~r~~--~~~~----------G~~~~~~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~c 364 (549)
T KOG4683|consen 297 VLLALVATYLGLTFGLRVPGCPRGY--LGPG----------GKHDYNAHPKCNAVGYADRQVLGIAHIYQHPTAKRVKDC 364 (549)
T ss_pred HHHHhhhhhhceecccccCCCCccc--ccCC----------cccccCCCCCccchhhhHHhhhhhHHHhcCchHHHhhhc
Confidence 2223344455567888889888666 5554 4444444 6799999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhccc-c
Q 014889 284 SINSPDYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVG-M 362 (416)
Q Consensus 284 ~~~~p~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~r~~~~l~~G~~l~~lg~ll~~~~-~ 362 (416)
|++||++|++|+|||+||+.||||||+||+|.+++++++|.++|+++.+.|.+..|+++|...+..+.++|..++... +
T Consensus 365 s~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~s~~ 444 (549)
T KOG4683|consen 365 SINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGFSAI 444 (549)
T ss_pred ccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998654 8
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcccccccc
Q 014889 363 HLNKALYSLSYTCLTAGASGVLLAGIYFMVRYISSHLMLKKPFDYSYACK 412 (416)
Q Consensus 363 PinK~LWS~SfVl~t~G~a~llLa~~y~liDv~~~~~~~~~Pf~y~~~~~ 412 (416)
|+||||||.||+++|+|.+.++++.+|++|||++| +|++-||---+||.
T Consensus 445 Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW-~~~~~P~~~~GMNA 493 (549)
T KOG4683|consen 445 PLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREW-SWSGYPFTECGMNA 493 (549)
T ss_pred chhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHh-hhccCChhhhccch
Confidence 99999999999999999999999999999999998 79999999999985
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=5.1e-56 Score=425.55 Aligned_cols=289 Identities=35% Similarity=0.426 Sum_probs=255.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccc---cccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHH
Q 014889 53 QRRLISLDVFRGLTVALMILVDDVG---GILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILR 129 (416)
Q Consensus 53 ~~Ri~sLD~lRGlav~~Milvn~~g---~~~~~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~~~~~~i~rR 129 (416)
.-|+.|+|++||++|++||+||+.+ +.|+++.|+.|.|+|.+|++||+|+|++|.++++|.++..+.+....++.||
T Consensus 5 a~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~RR 84 (371)
T COG4299 5 AFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLYRR 84 (371)
T ss_pred hhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHHHH
Confidence 3699999999999999999999975 4688999999999999999999999999999999998887777788999999
Q ss_pred HHHHHHHHHHHhhcccccccccccccc-ccchHhhHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhhhhHHHHHHHH
Q 014889 130 ALNLFLLGIFLQGGFFHGINNLKYGVD-IAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALV 208 (416)
Q Consensus 130 ~l~L~~iGlll~~~~~~~~~~~~~~~~-~~~~r~~GVLqrIgl~yli~all~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 208 (416)
...+|++|++++.++... + +.++ .+..|.+||||||++||+++++....+ +.|+|++.+.+
T Consensus 85 aa~~f~Lg~Lm~~F~~~~--~--ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L--------------~~r~q~~laav 146 (371)
T COG4299 85 AAERFALGYLMGAFVTVR--D--WSVTSHSLTRGMGVLQRIALAYLFAALLVRQL--------------RGRWQALLAAV 146 (371)
T ss_pred HHHHHHHHHHhhhccccc--e--eeeeechhhHHHHHHHHHHHHHHHHHHHHHhc--------------ChHHHHHHHHH
Confidence 999999999998654321 1 1233 678999999999999999999987666 57899999999
Q ss_pred HHHHHHHHHHhcccCCCCCCCCccCCCCCCcccccccccCCCCCCCCCHHHHHHHHhhcccccccccccccccccccCCC
Q 014889 209 LTTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKQCSINSP 288 (416)
Q Consensus 209 ll~~y~~l~~~l~vP~~~~~~p~~gp~~~~~~~~~~~g~~g~~~~~~n~a~~iDr~vlg~~Hly~~~~~~~~~~~~~~~p 288 (416)
++++||+.+...|+|+.|.+ ..+|..+++|+...+.+|+|..
T Consensus 147 LL~gYwl~lm~~p~P~~~l~------------------------~~Gn~g~~~d~l~i~~~hLy~~-------------- 188 (371)
T COG4299 147 LLAGYWLFLMFTPHPAAPLG------------------------GIGNVGESADPLQILNDHLYSA-------------- 188 (371)
T ss_pred HHHHHHHHHhhcCCCccccc------------------------cccccccccchhhhhhhhhhcc--------------
Confidence 99999999888888976532 2346778999999999999984
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 014889 289 DYGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLNKAL 368 (416)
Q Consensus 289 ~~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~r~~~~l~~G~~l~~lg~ll~~~~~PinK~L 368 (416)
...|||||++||+|+++.++.|+++++.++++..+.+....+.+.|+++.++|+.|. --+||||+|
T Consensus 189 -------------dG~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~-~~fPi~KkL 254 (371)
T COG4299 189 -------------DGGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWA-GRFPISKKL 254 (371)
T ss_pred -------------cCCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhccccc-cccccchhh
Confidence 144899999999999999999999999999877777777789999999999999998 449999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcccccccc
Q 014889 369 YSLSYTCLTAGASGVLLAGIYFMVRYISSHLMLKKPFDYSYACK 412 (416)
Q Consensus 369 WS~SfVl~t~G~a~llLa~~y~liDv~~~~~~~~~Pf~y~~~~~ 412 (416)
||+|||++|+|+..++++.||.++|.++- +-.++||..++.|.
T Consensus 255 WTssyvl~t~G~~llllaac~~l~e~~~~-kr~~~pf~i~GlNa 297 (371)
T COG4299 255 WTSSYVLYTAGLGLLLLAACWVLAESPGG-KRLLAPFTIPGLNA 297 (371)
T ss_pred cCCceeehhhhHHHHHHHHHHHHHcCccc-CcCcCceeecCcch
Confidence 99999999999999999999999999886 45688999888764
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.86 E-value=6.5e-21 Score=180.40 Aligned_cols=189 Identities=31% Similarity=0.351 Sum_probs=132.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccccc--ccc-CC--CCCchhhHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHH
Q 014889 55 RLISLDVFRGLTVALMILVDDVGGILP--AIN-HS--PWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILR 129 (416)
Q Consensus 55 Ri~sLD~lRGlav~~Milvn~~g~~~~--~l~-h~--~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~~~~~~i~rR 129 (416)
|+.++|++||+|+++|+++|....... ..+ +. .+......|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998754211 111 11 123345778999999999999999998877665 788999
Q ss_pred HHHHHHHHHHHhhccccccccccccccccchHhhHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhhhhHHHHHHHHH
Q 014889 130 ALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALVL 209 (416)
Q Consensus 130 ~l~L~~iGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~yli~all~l~~~~~~~~~~~~~~~~~~~~~~i~~~~l 209 (416)
++.|+++|++++... +....+...++||||+||+++++++++. .+ +.+..++.++++
T Consensus 77 ~~~l~~~g~~i~~~~--------~~~~~~~~i~~gIL~~ig~~~ll~~~~~-~~--------------~~~~~~~~~~~~ 133 (223)
T PF07786_consen 77 GLKLFLLGLLINLLT--------FFFFPEGFIYFGILQFIGLSMLLAALFL-RL--------------PRRALLILALLL 133 (223)
T ss_pred HHHHHHHHHHHHHHH--------HHhcCCceeehhHHHHHHHHHHHHHHHH-hc--------------chhHHHHHHHHH
Confidence 999999999998531 1123355668999999999999988773 33 344555556666
Q ss_pred HHHHHHHHHhcccCCCCCCCCccCCCCCCcccccccccCCCCCCCCCHHHHHHHHhhcccccccccccccccccccCCCC
Q 014889 210 TTLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKQCSINSPD 289 (416)
Q Consensus 210 l~~y~~l~~~l~vP~~~~~~p~~gp~~~~~~~~~~~g~~g~~~~~~n~a~~iDr~vlg~~Hly~~~~~~~~~~~~~~~p~ 289 (416)
+++++.+... ..+ . . +...+| ++.
T Consensus 134 ~~~~~~l~~~--~~~----------------------------~-----~--~~~~~~---~~~---------------- 157 (223)
T PF07786_consen 134 LALSWLLSGP--VFG----------------------------P-----P--WLLWLG---LSS---------------- 157 (223)
T ss_pred HHHHHHHhhh--hcC----------------------------c-----h--HHHHhc---ccc----------------
Confidence 6665554321 000 0 0 111111 111
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcccchhHH
Q 014889 290 YGPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDR 339 (416)
Q Consensus 290 ~g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~r 339 (416)
..++.||..+.+||++.+++|+.+|++..+..+++.+
T Consensus 158 -------------~~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~~~~~ 194 (223)
T PF07786_consen 158 -------------RNFFSNGYFPLFPWLGFFLLGMALGRLFLRKGRRRFR 194 (223)
T ss_pred -------------cCCCcCCcCccHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2367888999999999999999999988765443333
No 4
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.73 E-value=1.4e-16 Score=156.22 Aligned_cols=137 Identities=25% Similarity=0.318 Sum_probs=104.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhccccc--cccccCCCC-Cc--hhhHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHH
Q 014889 54 RRLISLDVFRGLTVALMILVDDVGGI--LPAINHSPW-NG--LTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAIL 128 (416)
Q Consensus 54 ~Ri~sLD~lRGlav~~Milvn~~g~~--~~~l~h~~w-~G--~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~~~~~~i~r 128 (416)
+|+.+||++||++|+.|++.|+..+. ....+.+.- .| ..++..+.|.|+|++|+|..++..|+.++ .++++|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 79999999999999999999976541 112221111 12 24788999999999999999998777663 789999
Q ss_pred HHHHHHHHHHHHhhccccccccccccccccchHhhHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhhhhHHHHHHHH
Q 014889 129 RALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALV 208 (416)
Q Consensus 129 R~l~L~~iGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~yli~all~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ 208 (416)
|+++|.+.+++++.. |+..-+++++++||||.||+++++...+. +++ .-.+..++++
T Consensus 91 RgL~l~~l~l~It~~--------Twf~~P~sfI~fgILh~igLa~ll~~~fl-~lP--------------~~~~l~~a~~ 147 (323)
T COG3503 91 RGLKLAALALAITAV--------TWFAFPDSFIFFGILHAIGLASLLGAAFL-WLP--------------RAVLLALAVA 147 (323)
T ss_pred HHHHHHHHHHHHHHe--------eeEecCCceehHHHHHHHHHHHHHHHHHH-hCc--------------hHHHHHHHHH
Confidence 999999999999864 22233488899999999999999988763 442 3356667777
Q ss_pred HHHHHHHH
Q 014889 209 LTTLYLLL 216 (416)
Q Consensus 209 ll~~y~~l 216 (416)
+++++.++
T Consensus 148 ~v~~~~lL 155 (323)
T COG3503 148 AVAAHILL 155 (323)
T ss_pred HHHhHHhc
Confidence 77777755
No 5
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.32 E-value=1.2e-11 Score=126.69 Aligned_cols=140 Identities=27% Similarity=0.373 Sum_probs=99.2
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHhccccccc----cccCCCC-Cch-----hhHHH-----HHHHHHHHHHHHHHH
Q 014889 47 TRPQHQQRRLISLDVFRGLTVALMILVDDVGGILP----AINHSPW-NGL-----TLADF-----VMPFFLFIVGVSLAL 111 (416)
Q Consensus 47 ~~~~~~~~Ri~sLD~lRGlav~~Milvn~~g~~~~----~l~h~~w-~G~-----t~aDl-----vfP~FlFl~G~s~~l 111 (416)
..|..+++|+.++|++||+|+++++++|.....++ ..-+..| .+. .+.|+ +.|+|.|++|+++.+
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~ 83 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAM 83 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 34556789999999999999999999998543222 1112222 211 11222 599999999999999
Q ss_pred hhccCCchh-hhHHHHHHHHHHHHHHHHHHhhccccccccccccccccchHhhHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 014889 112 TYKNFPCKV-VATRKAILRALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVS 190 (416)
Q Consensus 112 s~~~~~~k~-~~~~~i~rR~l~L~~iGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~yli~all~l~~~~~~~~~ 190 (416)
..+|..+|+ +..+..+||...|+++|++|..+.|+ .+|-+.|.+++++.+.++++
T Consensus 84 ~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~--------------------GDIL~~Ya~~g~ill~~~~~---- 139 (394)
T COG2311 84 MLRRAARKGRRWVALYARRLLLLLLLGLIHALFIWD--------------------GDILLAYALTGLILLLFRRR---- 139 (394)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc--------------------chHHHHHHHHHHHHHHHHhc----
Confidence 999876665 45677899999999999999754321 45559999999988777654
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHH
Q 014889 191 SKLSLFRKYRGHWVVALVLTTLYLLLL 217 (416)
Q Consensus 191 ~~~~~~~~~~~~~i~~~~ll~~y~~l~ 217 (416)
+.++.+.++..+.+.+..+.
T Consensus 140 -------~~k~l~~~~~~l~l~~~~~~ 159 (394)
T COG2311 140 -------KPKTLLIWATALLLLPVLLG 159 (394)
T ss_pred -------cccHHHHHHHHHHHHHHHHH
Confidence 34556666666666655443
No 6
>PRK10835 hypothetical protein; Provisional
Probab=98.81 E-value=3.4e-08 Score=101.38 Aligned_cols=100 Identities=24% Similarity=0.235 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhcccccccc-------ccC--CCCCch--hhH-----HHHHHHHHHHHHHHHHHhhccCCchhhh
Q 014889 59 LDVFRGLTVALMILVDDVGGILPA-------INH--SPWNGL--TLA-----DFVMPFFLFIVGVSLALTYKNFPCKVVA 122 (416)
Q Consensus 59 LD~lRGlav~~Milvn~~g~~~~~-------l~h--~~w~G~--t~a-----DlvfP~FlFl~G~s~~ls~~~~~~k~~~ 122 (416)
+|++||+|+++++++|......+. ..+ +.+|.. .+. ...+|+|.+++|+++.+..+|.++
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999964321111 111 011111 111 236999999999999999875322
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccccccccchHhhHHHHHHHHHHHHHHHHHHHhh
Q 014889 123 TRKAILRALNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLK 184 (416)
Q Consensus 123 ~~~i~rR~l~L~~iGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~yli~all~l~~~ 184 (416)
...||+..|+++|++|....+ ..+|| ..|.+++++.+.+.
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw----------------~GDIL----~~YAv~Gl~l~~~~ 116 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFW----------------DGDIL----LAYGLVGLICWRLI 116 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHc----------------cchHH----HHHHHHHHHHHHHH
Confidence 467999999999999874321 12455 67777777766554
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.31 E-value=0.0001 Score=75.72 Aligned_cols=81 Identities=27% Similarity=0.446 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchh---hhHHHHHHHHH
Q 014889 55 RLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKV---VATRKAILRAL 131 (416)
Q Consensus 55 Ri~sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~---~~~~~i~rR~l 131 (416)
|...||.+||++++.|++-|.+++....+.+..+ |++ | .+-.|+|++|++..+.+.|+.+|+ ...+|+.||..
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~-Gfs--d-aAE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF-GFS--D-AAEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc-cCC--C-cchhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 6677999999999988888887765444433333 332 1 133799999999999997765332 46688999987
Q ss_pred HHHHHHHH
Q 014889 132 NLFLLGIF 139 (416)
Q Consensus 132 ~L~~iGll 139 (416)
.|...-++
T Consensus 77 ~lY~a~i~ 84 (358)
T PF10129_consen 77 QLYVAHIA 84 (358)
T ss_pred HHHHHHHH
Confidence 76554443
No 8
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=0.00042 Score=70.09 Aligned_cols=97 Identities=25% Similarity=0.394 Sum_probs=67.8
Q ss_pred CCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHhccccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchh
Q 014889 41 NSNSKQTRPQHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKV 120 (416)
Q Consensus 41 ~~~~~~~~~~~~~~Ri~sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~ 120 (416)
++.-.+++-+-..+|...||++||++++.|.+-|.++..+..+.|... |++ | -+=.|+|++|.+..+.+.|+..++
T Consensus 9 r~~~~~~~~~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf-gfs--d-aAEaFVliSGllvgmaYsrKf~~g 84 (410)
T COG4645 9 RAMRIPERRAVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF-GFS--D-AAEAFVLISGLLVGMAYSRKFMKG 84 (410)
T ss_pred ccccccccccCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc-ccc--c-cchhhhhHHHHHHHHHHhhhhccC
Confidence 333344444456689999999999999999887777765555666654 332 1 122699999999999998875433
Q ss_pred -h--hHHHHHHHHHHHHH---HHHHHh
Q 014889 121 -V--ATRKAILRALNLFL---LGIFLQ 141 (416)
Q Consensus 121 -~--~~~~i~rR~l~L~~---iGlll~ 141 (416)
+ ...|+++|...|.. .|+++.
T Consensus 85 grla~~lkiWrRA~~LY~~himtl~ia 111 (410)
T COG4645 85 GRLAGTLKIWRRAMVLYVAHIMTLVIA 111 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 44589999988876 344444
No 9
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=97.75 E-value=0.0039 Score=58.92 Aligned_cols=53 Identities=26% Similarity=0.512 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccccCCCCCch-------hhHHHHHHHHHHHHHHHHH
Q 014889 57 ISLDVFRGLTVALMILVDDVGGILPAINHSPWNGL-------TLADFVMPFFLFIVGVSLA 110 (416)
Q Consensus 57 ~sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G~-------t~aDlvfP~FlFl~G~s~~ 110 (416)
.++|.+||+|++++++.|......... ...+... .......|+|.+++|+.+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPP-FQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccc-cccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 579999999999999999765321111 0011000 3456789999999999998
No 10
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.64 E-value=0.00038 Score=62.17 Aligned_cols=90 Identities=20% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHhcccchh---------HHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHH
Q 014889 307 PEGLLSSVMATVTCLIGLHFGHLIVHFKDHR---------DRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLT 377 (416)
Q Consensus 307 PEGlLstlpai~~~llG~~aG~iL~~~~~~~---------~r~~~~l~~G~~l~~lg~ll~~~~~PinK~LWS~SfVl~t 377 (416)
-||++|.+.-++.-++|...|+.+...+... +...+++.+++++-++-.+++..+.|+.+++...+||+.+
T Consensus 3 rEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vSRRlaNl~Yvlwv 82 (136)
T PF06423_consen 3 REGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSYIEPVSRRLANLPYVLWV 82 (136)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHhcchHHHHHH
Confidence 5999999999999999999999775433322 3333455666666666666655678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 014889 378 AGASGVLLAGIYFMVRYIS 396 (416)
Q Consensus 378 ~G~a~llLa~~y~liDv~~ 396 (416)
.++....++.++.+-++..
T Consensus 83 ~a~n~~~l~~~~~i~~~~~ 101 (136)
T PF06423_consen 83 LAFNTFFLALYLLIELLLF 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999988888776666654
No 11
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=96.87 E-value=0.0041 Score=63.50 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=57.9
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhccccc--ccc-c---cCCCCCch--hhHH-HHHHHHHHHHHHHHHHhhccCCchhh
Q 014889 51 HQQRRLISLDVFRGLTVALMILVDDVGGI--LPA-I---NHSPWNGL--TLAD-FVMPFFLFIVGVSLALTYKNFPCKVV 121 (416)
Q Consensus 51 ~~~~Ri~sLD~lRGlav~~Milvn~~g~~--~~~-l---~h~~w~G~--t~aD-lvfP~FlFl~G~s~~ls~~~~~~k~~ 121 (416)
++++|...+|.+||+++++.++.|..... ... . +...|... ...+ ..+|+|.|++|+....+.+|+ +.++
T Consensus 4 ~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~-~~~~ 82 (375)
T PRK03854 4 VPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRY-PPKR 82 (375)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHH
Confidence 34579999999999999999999974210 000 0 11112111 0111 348999999999988876544 3346
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 014889 122 ATRKAILRALNLFLLGIFL 140 (416)
Q Consensus 122 ~~~~i~rR~l~L~~iGlll 140 (416)
..++-++|.+.-++++.++
T Consensus 83 f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 83 WLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 6777788887777776544
No 12
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=95.65 E-value=1.4 Score=44.80 Aligned_cols=57 Identities=21% Similarity=0.487 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcccc-cccc-ccCC-CC---Cch-hhHHHHHHHHHHHHHHHH
Q 014889 53 QRRLISLDVFRGLTVALMILVDDVGG-ILPA-INHS-PW---NGL-TLADFVMPFFLFIVGVSL 109 (416)
Q Consensus 53 ~~Ri~sLD~lRGlav~~Milvn~~g~-~~~~-l~h~-~w---~G~-t~aDlvfP~FlFl~G~s~ 109 (416)
.+|+.++|++|++|++..+.+|.... .+.+ +.|. .| |.. +..-.+.|+|..+.|.-+
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL~ 65 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYLF 65 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36999999999999999999997642 2222 2222 14 443 455678999999999753
No 13
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=92.29 E-value=0.092 Score=53.84 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=43.2
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHhccccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCch
Q 014889 49 PQHQQRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCK 119 (416)
Q Consensus 49 ~~~~~~Ri~sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k 119 (416)
....++|+.++|.+||+|++..++.|........ +..+.+ ...+..-+|..++|+-+.-...+..++
T Consensus 8 ~~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~~--~~g~~~--~g~~gVdiFFvlSGfli~~~~~~~~~~ 74 (386)
T COG1835 8 INSSGGRLPGLDGLRAIAALLVVLYHAGFQIGPG--PGGFVG--RGVLGVDLFFVLSGFLITRSLLRSAAA 74 (386)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHHccccccCC--CCcccc--ccccceeEeeeccHHHHHHHHHHHhhc
Confidence 3344689999999999999999999976532111 111100 111223378899999999886554433
No 14
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=89.92 E-value=2.6 Score=43.56 Aligned_cols=226 Identities=18% Similarity=0.252 Sum_probs=123.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhcccc--ccc-cccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHH
Q 014889 54 RRLISLDVFRGLTVALMILVDDVGG--ILP-AINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRA 130 (416)
Q Consensus 54 ~Ri~sLD~lRGlav~~Milvn~~g~--~~~-~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~~~~~~i~rR~ 130 (416)
.|...+|..|+.-+..-+..=...+ .++ .+..+.--|.+..|+....|++-.|+--. |.++ ++.+|-+
T Consensus 109 ~~~~~it~yR~~i~~~tviaIlAvDFp~fprRlgKsetwGtsLMDiGVGSFvynsGivs~----Raks-----K~~lkn~ 179 (429)
T COG5062 109 YTSMAITRYRFLIIGCTVIAILAVDFPFFPRRLGKSETWGTSLMDIGVGSFVYNSGIVST----RAKS-----KRKLKNA 179 (429)
T ss_pred cchhhhHHHHHHHHHhhhhheeeeccccchHhhhhhhcccceeeecccceeEeccceeec----ccCc-----cHHHHhh
Confidence 5788899999876544333222222 111 12222223788999999999998886422 2222 3478889
Q ss_pred HHHHHHHHHHhhccccccccccccccccchHhhHHHHHHHHHHHHHHHHHHHhhcCCCCccchhhhhhhhHHHHHHHHHH
Q 014889 131 LNLFLLGIFLQGGFFHGINNLKYGVDIAQIRWMGVLQRIAIAYLVAALCEIWLKGDGHVSSKLSLFRKYRGHWVVALVLT 210 (416)
Q Consensus 131 l~L~~iGlll~~~~~~~~~~~~~~~~~~~~r~~GVLqrIgl~yli~all~l~~~~~~~~~~~~~~~~~~~~~~i~~~~ll 210 (416)
+.|+.+|++=.... ..+.+ .++.|=.||=+-.-+...+..+...+.+ .+....++..+.
T Consensus 180 lillflGflR~f~v----k~lny---qvhvrEyGvhwNFfftLgllnl~~~fir--------------~r~nflLg~fi~ 238 (429)
T COG5062 180 LILLFLGFLRYFSV----KLLNY---QVHVREYGVHWNFFFTLGLLNLASLFIR--------------TRANFLLGFFIC 238 (429)
T ss_pred hHHHHHHHHHHHHH----HHhcc---ccccHHheeehhHHHHHHHHHHHHHHhh--------------hhHhHHHHHHHH
Confidence 99999999754210 00111 2345666666555455555555555543 344466666666
Q ss_pred HHHHHHHHhcccCCCCCCCCccCCCCCCcccccccccCCCCCCCCCHHHHHHHHhhcccccccccccccccccccCCCCC
Q 014889 211 TLYLLLLYGLYVPDWQYEFPVETSSSSPWIFNVTCGVRGSTGPACNAVGMIDRKILGIQHLYRKPIYSRTKQCSINSPDY 290 (416)
Q Consensus 211 ~~y~~l~~~l~vP~~~~~~p~~gp~~~~~~~~~~~g~~g~~~~~~n~a~~iDr~vlg~~Hly~~~~~~~~~~~~~~~p~~ 290 (416)
..|=+++-..+ + ...++ ..+ | .
T Consensus 239 l~he~lLkf~~-----------------------------l----------~kfi~------sa~---R----------~ 260 (429)
T COG5062 239 LTHELLLKFFG-----------------------------L----------EKFIY------SAA---R----------S 260 (429)
T ss_pred HHHHHHHHhcc-----------------------------H----------HHhhh------cCc---h----------h
Confidence 66665542211 0 01111 110 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHHHHHHhhccccccccc
Q 014889 291 GPMPLDAPSWCQAPFDPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSC---LIGLGLSLDFVGMHLNKA 367 (416)
Q Consensus 291 g~~~~~~~~~~~~~fDPEGlLstlpai~~~llG~~aG~iL~~~~~~~~r~~~~l~~G~~---l~~lg~ll~~~~~PinK~ 367 (416)
+--.-+-||+.+++|-+.+.+.|.-.|++....+.. |...|-.++.. .+++=.+.++...- ..+
T Consensus 261 ----------~il~~NrEGI~sll~yisIfl~g~~tg~vvf~~kpT--r~~~wk~~~~~~af~lciylVfnf~s~s-sRR 327 (429)
T COG5062 261 ----------SILTSNREGITSLLPYISIFLMGADTGKVVFKKKPT--RKKAWKIIILYNAFFLCVYLVFNFYSTS-SRR 327 (429)
T ss_pred ----------hHHHhchhhhhhcchhhhheeeecccceEEecCCCc--hHHHHHHHHHHHHHHHHHHHHHhhcccc-hhh
Confidence 001125799999999999999999999977554442 22223333222 22222222322122 666
Q ss_pred CCChhHHHHHHHH
Q 014889 368 LYSLSYTCLTAGA 380 (416)
Q Consensus 368 LWS~SfVl~t~G~ 380 (416)
+=...||+...-+
T Consensus 328 laNlpfv~wi~~l 340 (429)
T COG5062 328 LANLPFVMWIMLL 340 (429)
T ss_pred hcCccHHHHHHHH
Confidence 7677777765543
No 15
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=81.40 E-value=2 Score=44.13 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=37.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHhccccccccccCCCCCc---hhhHHHHHHHHHHHHHHH
Q 014889 53 QRRLISLDVFRGLTVALMILVDDVGGILPAINHSPWNG---LTLADFVMPFFLFIVGVS 108 (416)
Q Consensus 53 ~~Ri~sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G---~t~aDlvfP~FlFl~G~s 108 (416)
++|-.++|+.||+-|++.++.|..+...+ |.- ..+.-.-+|+|.|++|+-
T Consensus 2 ~~R~~~~D~AKGigIlLVV~GH~~~p~~~------~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 2 KKRDLWFDAAKGIGILLVVFGHILQPISP------WLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred chhHHHHhHhhccchhhhhhhhhcccccc------cchHHHHHHHHHHHHHHHhhhhhc
Confidence 57999999999999999999997664221 321 123334599999999975
No 16
>PF15345 TMEM51: Transmembrane protein 51
Probab=76.73 E-value=2.6 Score=41.05 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhhccc-cc----------------------ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhc
Q 014889 343 WIILSSCLIGLGLSLDFVG-MH----------------------LNKALYSLSYTCLTAGASGVLLAGIYFMVRYIS 396 (416)
Q Consensus 343 ~l~~G~~l~~lg~ll~~~~-~P----------------------inK~LWS~SfVl~t~G~a~llLa~~y~liDv~~ 396 (416)
+..+|+.|+++|.++-.-. +| .+++=-|.-|||+.+|.++++|++|.-+=|-++
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRR 85 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888875210 11 222345578999999999999999998877665
No 17
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=48.36 E-value=2.4e+02 Score=26.56 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHH
Q 014889 58 SLDVFRGLTVALMILVDDVGGILPAINHSPWNGLTLADFVMPFFLFIVGVSLALTYKNFPCKVVATRKAILRALNL 133 (416)
Q Consensus 58 sLD~lRGlav~~Milvn~~g~~~~~l~h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~~~~~k~~~~~~i~rR~l~L 133 (416)
|-|.+.=+|++.|++=|...-. ..+..| -..+..+.+|+|.|+..-++.-. +..+|..+|....
T Consensus 2 s~~~LK~iA~i~M~iDHi~~~~---~~~~~~-~~~iGR~afPlF~f~~~eG~~~T--------~n~~kY~~RL~~~ 65 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIGFLF---FPDGPW-LRIIGRIAFPLFAFLLVEGFFHT--------RNRKKYLLRLLIF 65 (219)
T ss_pred chhHHHHHHHHHHHHHhhcccc---cCcchH-HHHhhHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHH
Confidence 4588899999999998865211 112222 11356788999999998776542 2235666665433
No 18
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=46.69 E-value=37 Score=29.07 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=20.6
Q ss_pred CCCchhhhHHHH--HHHHHHHHHHHHHhc
Q 014889 306 DPEGLLSSVMAT--VTCLIGLHFGHLIVH 332 (416)
Q Consensus 306 DPEGlLstlpai--~~~llG~~aG~iL~~ 332 (416)
.--|++|+|.+- +.+++|+..|.+|-+
T Consensus 40 ~~l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 40 EGLGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334677887765 688999999999954
No 19
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=37.53 E-value=84 Score=34.91 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhh-cccccccccC
Q 014889 345 ILSSCLIGLGLSLD-FVGMHLNKAL 368 (416)
Q Consensus 345 ~~G~~l~~lg~ll~-~~~~PinK~L 368 (416)
.+|+.-++.|++-+ ++|.+++.-.
T Consensus 398 ~~gi~sii~G~lyG~fFG~~~~~~~ 422 (646)
T PRK05771 398 YLGISTIIWGLLTGSFFGFSLPIFL 422 (646)
T ss_pred HHHHHHHHHHHHHHhHhcCcccccc
Confidence 45655666666554 4465554433
No 20
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=33.42 E-value=2.6e+02 Score=24.27 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=42.6
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHhc-ccc----hhHHHHH--HHHHHHHHHHHHHHhhcccccccccCCChhHHHHH
Q 014889 305 FDPEGLLSSVMATVTCLIGLHFGHLIVH-FKD----HRDRMLN--WIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLT 377 (416)
Q Consensus 305 fDPEGlLstlpai~~~llG~~aG~iL~~-~~~----~~~r~~~--~l~~G~~l~~lg~ll~~~~~PinK~LWS~SfVl~t 377 (416)
.+|.|++.|. .-.++|..+|..+.. ++. ..++... ...| ++-..+|.++. +. .+...-..||++++
T Consensus 24 ~~~~~~l~Ta---~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W-~~a~~vG~~LR--~~-~~~~~~~~~FiiVa 96 (112)
T PF11255_consen 24 LSPAGVLRTA---WPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVW-LVAVPVGMALR--AL-LFGGGPAWSFIIVA 96 (112)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH-HHHHHHHHHHH--HH-HhCCCCCcchHHHH
Confidence 4566666665 666677776664432 211 1222221 1222 22334566665 23 45666678999999
Q ss_pred HHHHHHHHHH
Q 014889 378 AGASGVLLAG 387 (416)
Q Consensus 378 ~G~a~llLa~ 387 (416)
..+..++|..
T Consensus 97 ~~~~~vlL~g 106 (112)
T PF11255_consen 97 LVFLAVLLLG 106 (112)
T ss_pred HHHHHHHHHH
Confidence 9888877754
No 21
>PF00510 COX3: Cytochrome c oxidase subunit III This family corresponds to chains c and p.; InterPro: IPR000298 Cytochrome c oxidase (1.9.3.1 from EC) is the terminal enzyme of the respiratory chain of mitochondria and many aerobic bacteria. It catalyses the transfer of electrons from reduced cytochrome c to molecular oxygen: 4 cytochrome c+2 + 4 H+ + O2 --> 4 cytochrome c+3 + 2 H2O This reaction is coupled to the pumping of four additional protons across the mitochondrial or bacterial membrane [, ]. Cytochrome c oxidase is an oligomeric enzymatic complex that is located in the mitochondrial inner membrane of eukaryotes and in the plasma membrane of aerobic prokaryotes. The core structure of prokaryotic and eukaryotic cytochrome c oxidase contains three common subunits, I, II and III. In prokaryotes, subunits I and III can be fused and a fourth subunit is sometimes found, whereas in eukaryotes there are a variable number of additional small polypeptidic subunits []. The functional role of subunit III is not yet understood. As the bacterial respiratory systems are branched, they have a number of distinct terminal oxidases, rather than the single cytochrome c oxidase present in the eukaryotic mitochondrial systems. Although the cytochrome o oxidases do not catalyse the cytochrome c but the quinol (ubiquinol) oxidation they belong to the same haem-copper oxidase superfamily as cytochrome c oxidases. Members of this family share sequence similarities in all three core subunits: subunit I is the most conserved subunit, whereas subunit II is the least conserved [, , ].; GO: 0004129 cytochrome-c oxidase activity, 0006123 mitochondrial electron transport, cytochrome c to oxygen, 0016020 membrane; PDB: 1M57_I 1M56_I 2EIL_P 2OCC_C 2EIM_C 2EIK_P 1OCZ_C 2EIJ_C 3AG2_P 1OCC_P ....
Probab=27.30 E-value=2.3e+02 Score=27.74 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=41.6
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHhhc-----ccccccccCCChhHHHHHH
Q 014889 305 FDPEGLLSSVMATVTCLIGLHFGHLIVH-FKDHRDRMLNWIILSSCLIGLGLSLDF-----VGMHLNKALYSLSYTCLTA 378 (416)
Q Consensus 305 fDPEGlLstlpai~~~llG~~aG~iL~~-~~~~~~r~~~~l~~G~~l~~lg~ll~~-----~~~PinK~LWS~SfVl~t~ 378 (416)
.||-+ ++.++++.+..-|+.+....+. .++++++.+.++..+++++++...+.. .++-++.+.+.+.|-+.|+
T Consensus 121 ~~~~~-lp~lnT~lLl~Ss~~~~~a~~~~~~~~~~~~~~~L~~t~~LG~~Fl~~Q~~Ey~~~~~~~~~~~~gS~fy~lTG 199 (258)
T PF00510_consen 121 LNPLG-LPLLNTILLLSSSVTVTWAHHALKRGNRKAARLWLLLTILLGLLFLVLQVYEYSHAGFTISDSVYGSFFYLLTG 199 (258)
T ss_dssp TTTTC-HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSCHHHHHHHHHHH
T ss_pred hhccc-hHHHHhHhhhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccccccccchhhhhhH
Confidence 34443 3445556666666665432222 123445556677777777666665532 2466788877777766653
No 22
>COG4763 Predicted membrane protein [Function unknown]
Probab=24.22 E-value=28 Score=35.73 Aligned_cols=59 Identities=20% Similarity=0.429 Sum_probs=38.7
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHhcccccccc---ccCCCCCchhhHH-HHHHHHHHHHHHHH
Q 014889 48 RPQHQQRRLISLDVFRGLTVALMILVDDVGGILPA---INHSPWNGLTLAD-FVMPFFLFIVGVSL 109 (416)
Q Consensus 48 ~~~~~~~Ri~sLD~lRGlav~~Milvn~~g~~~~~---l~h~~w~G~t~aD-lvfP~FlFl~G~s~ 109 (416)
..++.|+|..-+|...|++|++.++.|..-..|+. +.|.. + .+.| +=+|.|....|.-.
T Consensus 14 gfamnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~l-~--~~l~p~rmP~Ffl~sg~F~ 76 (388)
T COG4763 14 GFAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHPL-S--EVLSPCRMPYFFLYSGPFR 76 (388)
T ss_pred ccccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhHH-H--HhhchhhhHHHHHHhhHHH
Confidence 33445789999999999999999998865433331 22321 1 2333 34888888888643
No 23
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.52 E-value=2.8e+02 Score=24.37 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014889 337 RDRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGASGVLLAGIYFMVRYISS 397 (416)
Q Consensus 337 ~~r~~~~l~~G~~l~~lg~ll~~~~~PinK~LWS~SfVl~t~G~a~llLa~~y~liDv~~~ 397 (416)
..|+.+.-.||+.++.+|.+.-+.|+-..-.-|-.+..++.+.++.+.-++.|+.+.....
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~gi~f~~~~~im~ifmllG~L~~l~S~~VYfwIGmlSt 65 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYIGIFFKASPIIMVIFMLLGLLAILASTAVYFWIGMLST 65 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3455556666777777777665444322111222222333344555555778888877654
No 24
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=22.47 E-value=3.7e+02 Score=20.73 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 014889 336 HRDRMLNWIILSSCLIGLGLSLD 358 (416)
Q Consensus 336 ~~~r~~~~l~~G~~l~~lg~ll~ 358 (416)
+++....|+-.++.++++|.++-
T Consensus 6 ~ERT~LaW~Rt~l~l~~~g~~l~ 28 (73)
T PF02656_consen 6 NERTFLAWIRTALALVGVGLALL 28 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445578888888888888775
No 25
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=21.89 E-value=1.7e+02 Score=22.80 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=25.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHhh
Q 014889 309 GLLSSVMATVTCLIGLHFGHLIVHF-KDHRDRMLNWIILSSCLIGLGLSLD 358 (416)
Q Consensus 309 GlLstlpai~~~llG~~aG~iL~~~-~~~~~r~~~~l~~G~~l~~lg~ll~ 358 (416)
|++|.+....+...|...|++=+++ ++..++=+.+...|+++..++.++.
T Consensus 9 gi~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~~ 59 (62)
T PF13828_consen 9 GILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVLA 59 (62)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHH
Confidence 3444443334556666666643221 1222333456677777776666543
No 26
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=21.76 E-value=2e+02 Score=25.99 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=49.0
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHHHHHHHHHHH
Q 014889 306 DPEGLLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCLTAGASGVLL 385 (416)
Q Consensus 306 DPEGlLstlpai~~~llG~~aG~iL~~~~~~~~r~~~~l~~G~~l~~lg~ll~~~~~PinK~LWS~SfVl~t~G~a~llL 385 (416)
|-|-.-...|.....++|+-.|...+-..-.-......-+.|..++..|...+...--.....|+.+.++.+.|...++.
T Consensus 6 e~~k~~~l~P~LLNlFlgfGIGSFvqGD~igGg~~lg~~~lg~~L~~tG~~~~~~~~~~~~~~~~~g~~l~~iG~~tm~~ 85 (135)
T PF05628_consen 6 ESEKQTILVPFLLNLFLGFGIGSFVQGDYIGGGAVLGFDVLGGILILTGYIININANSKDDKMSITGSILMGIGGLTMAA 85 (135)
T ss_pred hhhccchhHHHHHHHHHhcCcchhhccceeCchhhhhHHHHhHHHHHhhheeecccccccccccchhHHHHHHhHHHHHH
Confidence 33444456999999999999999886432222233344566666777777665210112233577888888777664443
No 27
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=21.68 E-value=1e+02 Score=27.59 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=37.6
Q ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHHhhc---c---cccccccCCChhHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 014889 329 LIVHFKDHRDRMLNWIILSSCLIGLGLSLDF---V---GMHLNKALYSLSYTCLTAGASGVLLAGIYFMVRYISSHLMLK 402 (416)
Q Consensus 329 iL~~~~~~~~r~~~~l~~G~~l~~lg~ll~~---~---~~PinK~LWS~SfVl~t~G~a~llLa~~y~liDv~~~~~~~~ 402 (416)
++.+.+++++..++.+.++++..+...+... . ..+.+....+....+.....++...+++..+.+-.+.+ ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~-~~~ 84 (163)
T PF04235_consen 6 FFERPEEHRKLLRRLLLIGLAVGLPLALLSAASWLSAWPSPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQ-RLL 84 (163)
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-HHH
Confidence 3433445555555666555555433333321 0 12233333334444445556666666677777766532 234
Q ss_pred CCcccc
Q 014889 403 KPFDYS 408 (416)
Q Consensus 403 ~Pf~y~ 408 (416)
+||.+.
T Consensus 85 ~~l~~~ 90 (163)
T PF04235_consen 85 RPLAAV 90 (163)
T ss_pred HHHHHH
Confidence 555443
No 28
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.48 E-value=2.9e+02 Score=26.48 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=11.6
Q ss_pred hHhhHHHHH---------HHHHHHHHHHH
Q 014889 160 IRWMGVLQR---------IAIAYLVAALC 179 (416)
Q Consensus 160 ~r~~GVLqr---------Igl~yli~all 179 (416)
+|+++++.| +|+..++++.+
T Consensus 28 lRfPD~YtRLHAATKa~TLGv~LILlgv~ 56 (197)
T PRK12585 28 IRLPDVYTRTHAAGISNTFGVSLLLFATV 56 (197)
T ss_pred HhcCcHHHHhhccccchhhhHHHHHHHHH
Confidence 466666655 56666555544
No 29
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.45 E-value=5.3e+02 Score=22.17 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCchhhhHHHHHHHHHHHHHHH---HHhcccc--hhHHHHHHHHHHHHHHHHHHHhhcccccccccCCChhHHHH
Q 014889 306 DPEGLLSSVMATVTCLIGLHFGH---LIVHFKD--HRDRMLNWIILSSCLIGLGLSLDFVGMHLNKALYSLSYTCL 376 (416)
Q Consensus 306 DPEGlLstlpai~~~llG~~aG~---iL~~~~~--~~~r~~~~l~~G~~l~~lg~ll~~~~~PinK~LWS~SfVl~ 376 (416)
+++-+++.+.++ ++|...|- ++...+. ..+.+.+....-+....++..++ |+|.+.. +...+...
T Consensus 40 ~~~~~~~~~~~~---~ig~~~gl~s~if~~e~~s~~~~~iiHf~~~~~~~~~~~~~~g--W~~~~~~-~~~~~~~~ 109 (136)
T PF11457_consen 40 SVSSILSVLVAV---LIGAVFGLASLIFEIERWSLLKQTIIHFIITYAIFLILAYLLG--WFPLSVI-SLLIFILI 109 (136)
T ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHHHHhC--CcchhhH-HHHHHHHH
Confidence 445566665542 55555553 4433221 12233355555555556666555 6888753 33333333
No 30
>cd02862 NorE_like NorE_like subfamily of heme-copper oxidase subunit III. Heme-copper oxidases include cytochrome c and ubiquinol oxidases. Alcaligenes faecalis norE is found in a gene cluster containing norCB. norCB encodes the cytochrome c and cytochrome b subunits of nitric oxide reductase (NOR). Based on this and on its similarity to subunit III of cytochrome c oxidase (CcO) and ubiquinol oxidase, NorE has been speculated to be a subunit of NOR.
Probab=20.94 E-value=5.1e+02 Score=23.82 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHhh---c-----ccccccccCCChhHHHHH
Q 014889 310 LLSSVMATVTCLIGLHFGHLIVH-FKDHRDRMLNWIILSSCLIGLGLSLD---F-----VGMHLNKALYSLSYTCLT 377 (416)
Q Consensus 310 lLstlpai~~~llG~~aG~iL~~-~~~~~~r~~~~l~~G~~l~~lg~ll~---~-----~~~PinK~LWS~SfVl~t 377 (416)
.++.+++++...-+..+....+. +++++++.+.++...+++.++...+. . .++-++.+.+.+.|-.+|
T Consensus 52 ~~~~lnT~iLl~Ss~~~~~a~~a~~~~~~~~~~~~L~~t~~lg~~Fl~~q~~E~~~l~~~g~~~~~~~~~s~f~~lt 128 (186)
T cd02862 52 LLGALNTLVLLTSSFTVALAVRAARAGRRRRARRWLAAAVLLGLVFLVIKYFEYAHKIAAGIDPDAGLFFTLYFLLT 128 (186)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHH
Confidence 35566666776666665543322 23445556667766666666555532 1 133345556655555544
No 31
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=20.20 E-value=5e+02 Score=22.93 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 014889 310 LLSSVMATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCL 350 (416)
Q Consensus 310 lLstlpai~~~llG~~aG~iL~~~~~~~~r~~~~l~~G~~l 350 (416)
....+..+....++....+..+++. .+.+.......+++.
T Consensus 83 ~~~~i~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~l~~ 122 (169)
T PF07694_consen 83 IPAFIIIILIGILAGLISRFFRRKS-KKIKLLYLFLLSLVI 122 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhccHHHHHHHHHHH
Confidence 3333333333333333444443221 333444444444443
No 32
>PRK10663 cytochrome o ubiquinol oxidase subunit III; Provisional
Probab=20.16 E-value=5e+02 Score=24.60 Aligned_cols=65 Identities=12% Similarity=0.343 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHhhc--------ccccccccCCChhHHHHHH
Q 014889 314 VMATVTCLIGLHFGHLIVH-FKDHRDRMLNWIILSSCLIGLGLSLDF--------VGMHLNKALYSLSYTCLTA 378 (416)
Q Consensus 314 lpai~~~llG~~aG~iL~~-~~~~~~r~~~~l~~G~~l~~lg~ll~~--------~~~PinK~LWS~SfVl~t~ 378 (416)
++.+++..-++.+....+. +++++++.+.++...+++.++...+.. .++-++.+...+.|-++|+
T Consensus 71 ~nT~iLl~SS~~~~~A~~a~~~~~~~~~~~~L~~t~~LG~~Fl~~Q~~Ey~~l~~~g~~~~~~~~~S~fy~lTG 144 (204)
T PRK10663 71 VETFLLLFSSITYGMAAIAMYKNNKSQVISWLALTFLFGAGFIGMEIYEFHHLIVEGMGPDRSGFLSAFFALVG 144 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcChHHHHHHHHHH
Confidence 4444555555554443322 234445566777777777666655532 1465677777777666653
Done!