Query 014889
Match_columns 416
No_of_seqs 209 out of 906
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 02:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 14.8 2.4E+02 0.0083 26.9 6.1 53 337-392 276-333 (339)
2 1v54_C Cytochrome C oxidase po 13.9 3.6E+02 0.012 25.1 6.9 73 305-378 124-202 (261)
3 3n2f_G Na+/K+ ATPase gamma sub 12.5 70 0.0024 20.8 0.9 28 85-112 4-31 (31)
4 1m56_C Cytochrome C oxidase; m 12.1 6.3E+02 0.021 23.6 8.0 74 304-378 127-207 (266)
5 1qle_C Cytochrome C oxidase po 11.9 5.5E+02 0.019 24.1 7.5 74 304-378 134-214 (273)
6 2iub_A CORA, divalent cation t 10.6 2.5E+02 0.0086 27.1 4.8 41 336-378 299-344 (363)
7 2jo1_A Phospholemman; FXYD1, N 9.9 2.3E+02 0.0079 21.8 3.2 29 85-113 10-38 (72)
8 2jp3_A FXYD domain-containing 8.6 2.1E+02 0.0073 21.7 2.5 29 85-113 11-39 (67)
9 3p5n_A RIBU, riboflavin uptake 7.9 9.3E+02 0.032 20.9 7.1 44 316-359 89-132 (189)
10 2zxe_G FXYD10, phospholemman-l 7.8 2.4E+02 0.0081 21.9 2.5 30 85-114 13-42 (74)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=14.78 E-value=2.4e+02 Score=26.93 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccc-----ccccccCCChhHHHHHHHHHHHHHHHHHHHH
Q 014889 337 RDRMLNWIILSSCLIGLGLSLDFVG-----MHLNKALYSLSYTCLTAGASGVLLAGIYFMV 392 (416)
Q Consensus 337 ~~r~~~~l~~G~~l~~lg~ll~~~~-----~PinK~LWS~SfVl~t~G~a~llLa~~y~li 392 (416)
++.++.+.+++++++...++-+++| +|--+ |.-.|..+.+.++ ++..++|+..
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~gy~~~l~~m~-~~~~~~~~~f 333 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN--NPQGFWLVMALMV-VIIMIFVYIF 333 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS--CTTHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc--CchHHHHHHHHHH-HHHHHHHHHH
Confidence 3445556677777666666555554 56555 4455655544333 3333444443
No 2
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=13.91 E-value=3.6e+02 Score=25.15 Aligned_cols=73 Identities=14% Similarity=0.177 Sum_probs=40.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHhhc-----ccccccccCCChhHHHHHH
Q 014889 305 FDPEGLLSSVMATVTCLIGLHFGHLIVH-FKDHRDRMLNWIILSSCLIGLGLSLDF-----VGMHLNKALYSLSYTCLTA 378 (416)
Q Consensus 305 fDPEGlLstlpai~~~llG~~aG~iL~~-~~~~~~r~~~~l~~G~~l~~lg~ll~~-----~~~PinK~LWS~SfVl~t~ 378 (416)
.||-++ +.++.+++..-|+.+....+. .++++++.+.++...+++++....+.. .++-++.+.+.++|-+.|+
T Consensus 124 ~~~~~~-pllnT~iLL~Ss~t~~~A~~a~~~~~~~~~~~~L~~T~~LG~~F~~~Q~~Ey~~~~f~~~~~~ygS~ff~lTG 202 (261)
T 1v54_C 124 LNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVATG 202 (261)
T ss_dssp CCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHHH
T ss_pred CChHhH-HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 455432 345555666666665543221 234455666777777777666666542 2455677777776666654
No 3
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=12.47 E-value=70 Score=20.79 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=20.9
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 014889 85 HSPWNGLTLADFVMPFFLFIVGVSLALT 112 (416)
Q Consensus 85 h~~w~G~t~aDlvfP~FlFl~G~s~~ls 112 (416)
|-+|+......+++-.-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 4566666677778888888888887654
No 4
>1m56_C Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.25.1.1 PDB: 1m57_C*
Probab=12.13 E-value=6.3e+02 Score=23.59 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHhc-cc-chhHHHHHHHHHHHHHHHHHHHhhc-----ccccccccCCChhHHHH
Q 014889 304 PFDPEGLLSSVMATVTCLIGLHFGHLIVH-FK-DHRDRMLNWIILSSCLIGLGLSLDF-----VGMHLNKALYSLSYTCL 376 (416)
Q Consensus 304 ~fDPEGlLstlpai~~~llG~~aG~iL~~-~~-~~~~r~~~~l~~G~~l~~lg~ll~~-----~~~PinK~LWS~SfVl~ 376 (416)
+.||-+ ++.++.+++..-|+.+....+. .+ +++++.+.++...+++++....+.. .++-++.+.+.++|-+.
T Consensus 127 ~~~~~~-lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~l 205 (266)
T 1m56_C 127 TFDPWH-LPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGNIYGANFFMA 205 (266)
T ss_dssp CCCTTT-THHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSSHHHHHHHHH
T ss_pred CCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 345543 2344445555556665442221 22 4455666777777777666666542 24667777777777666
Q ss_pred HH
Q 014889 377 TA 378 (416)
Q Consensus 377 t~ 378 (416)
|+
T Consensus 206 TG 207 (266)
T 1m56_C 206 TG 207 (266)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>1qle_C Cytochrome C oxidase polypeptide III; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.25.1.1
Probab=11.87 E-value=5.5e+02 Score=24.14 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=41.8
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHhhc-----ccccccccCCChhHHHH
Q 014889 304 PFDPEGLLSSVMATVTCLIGLHFGHLIVH--FKDHRDRMLNWIILSSCLIGLGLSLDF-----VGMHLNKALYSLSYTCL 376 (416)
Q Consensus 304 ~fDPEGlLstlpai~~~llG~~aG~iL~~--~~~~~~r~~~~l~~G~~l~~lg~ll~~-----~~~PinK~LWS~SfVl~ 376 (416)
+.||-+ ++.++.+++..-|+.+....+. .++++++.+.++...+++++....+.. .++-++.+.+.++|-+.
T Consensus 134 ~~~~~~-lpllnT~iLL~Ss~tv~~A~~a~~~~~~~~~~~~~L~~Ti~LG~~F~~lQ~~Ey~~~~f~~~~~~ygS~ff~l 212 (273)
T 1qle_C 134 TFDPWH-LPLINTLILLLSGVAVTWAHHAFVLEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMA 212 (273)
T ss_dssp CCCTTT-HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTHHHHTHHHHHHHHHHHHGGGCSCCSSSCHHHHHHHHH
T ss_pred cCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 356543 2344555666666665443221 234455666777777777666665542 24567777777777666
Q ss_pred HH
Q 014889 377 TA 378 (416)
Q Consensus 377 t~ 378 (416)
|+
T Consensus 213 TG 214 (273)
T 1qle_C 213 TG 214 (273)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.57 E-value=2.5e+02 Score=27.15 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccc-----ccccccCCChhHHHHHH
Q 014889 336 HRDRMLNWIILSSCLIGLGLSLDFVG-----MHLNKALYSLSYTCLTA 378 (416)
Q Consensus 336 ~~~r~~~~l~~G~~l~~lg~ll~~~~-----~PinK~LWS~SfVl~t~ 378 (416)
.++.++.+.+++++++...++-+++| +|--+ |.-.|..+.+
T Consensus 299 ~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~Gy~~~l~ 344 (363)
T 2iub_A 299 TNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR--WKWGYPVVLA 344 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC----------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc--CcHHHHHHHH
Confidence 34555567788888888777777665 45555 4445544433
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=9.91 E-value=2.3e+02 Score=21.77 Aligned_cols=29 Identities=24% Similarity=0.514 Sum_probs=24.1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 014889 85 HSPWNGLTLADFVMPFFLFIVGVSLALTY 113 (416)
Q Consensus 85 h~~w~G~t~aDlvfP~FlFl~G~s~~ls~ 113 (416)
|-+|+.+-..-++|...+|++|+.+.+|-
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcC
Confidence 44566666778899999999999999995
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.57 E-value=2.1e+02 Score=21.71 Aligned_cols=29 Identities=31% Similarity=0.543 Sum_probs=23.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 014889 85 HSPWNGLTLADFVMPFFLFIVGVSLALTY 113 (416)
Q Consensus 85 h~~w~G~t~aDlvfP~FlFl~G~s~~ls~ 113 (416)
|-+|+.+...-++|...+|++|+.+.+|-
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcC
Confidence 33466566777899999999999999985
No 9
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=7.93 E-value=9.3e+02 Score=20.87 Aligned_cols=44 Identities=9% Similarity=-0.004 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 014889 316 ATVTCLIGLHFGHLIVHFKDHRDRMLNWIILSSCLIGLGLSLDF 359 (416)
Q Consensus 316 ai~~~llG~~aG~iL~~~~~~~~r~~~~l~~G~~l~~lg~ll~~ 359 (416)
.++.+..|+.+|-+.++.+..++.+.-.....+++.+.+.+++.
T Consensus 89 ~l~~~~~g~~~~~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n~ 132 (189)
T 3p5n_A 89 FLAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNY 132 (189)
T ss_dssp HHHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778778866654332222222233333445556666663
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.76 E-value=2.4e+02 Score=21.85 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHhhc
Q 014889 85 HSPWNGLTLADFVMPFFLFIVGVSLALTYK 114 (416)
Q Consensus 85 h~~w~G~t~aDlvfP~FlFl~G~s~~ls~~ 114 (416)
|-+|+.+...-++|...+|++|+.+.+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 445666667789999999999999999853
Done!