Query 014889
Match_columns 416
No_of_seqs 209 out of 906
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 02:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54c_ f.25.1.1 (C:) Mitochon 30.8 52 0.0038 28.7 7.2 74 304-378 121-200 (259)
2 d1m56c_ f.25.1.1 (C:) Bacteria 18.9 1.2E+02 0.0089 26.0 7.3 68 311-378 132-206 (265)
3 d1fftc_ f.25.1.1 (C:) Cytochro 13.6 79 0.0058 25.6 4.2 45 334-378 74-126 (185)
4 d1x4pa1 a.217.1.1 (A:8-60) Arg 11.7 51 0.0037 21.9 1.8 20 10-29 2-21 (53)
5 d1jb0j_ f.23.18.1 (J:) Subunit 9.7 1E+02 0.0076 19.6 2.7 21 310-330 7-27 (41)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 5.8 1.9E+02 0.013 16.7 2.3 12 370-381 3-14 (30)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 4.7 7.9E+02 0.057 20.1 7.3 24 308-331 61-84 (447)
8 d1q90m_ f.23.25.1 (M:) PetM su 4.6 3.4E+02 0.025 16.0 3.0 18 314-331 10-27 (34)
9 d1knya2 d.218.1.1 (A:1-125) Ka 2.4 1.9E+02 0.014 21.9 0.2 12 303-314 108-119 (125)
10 d1pv7a_ f.38.1.2 (A:) Lactose 2.3 9.4E+02 0.069 18.7 5.1 24 309-332 46-69 (417)
No 1
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=30.79 E-value=52 Score=28.71 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHhhc-----ccccccccCCChhHHHHH
Q 014889 304 PFDPEGLLSSVMATVTCLIGLHFGHLIVH-FKDHRDRMLNWIILSSCLIGLGLSLDF-----VGMHLNKALYSLSYTCLT 377 (416)
Q Consensus 304 ~fDPEGlLstlpai~~~llG~~aG~iL~~-~~~~~~r~~~~l~~G~~l~~lg~ll~~-----~~~PinK~LWS~SfVl~t 377 (416)
+.||.+ ++.++.+++..-|..+....+. +++++++.++++...++++++...... .++.++.+.+.++|-+.|
T Consensus 121 ~~~~~~-lpllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLE-VPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTS-HHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhh-hHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 345544 4567777888888776654432 234455566777777777666655542 246678888877777766
Q ss_pred H
Q 014889 378 A 378 (416)
Q Consensus 378 ~ 378 (416)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 5
No 2
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=18.85 E-value=1.2e+02 Score=26.03 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHhhc-----ccccccccCCChhHHHHHH
Q 014889 311 LSSVMATVTCLIGLHFGHLIVH--FKDHRDRMLNWIILSSCLIGLGLSLDF-----VGMHLNKALYSLSYTCLTA 378 (416)
Q Consensus 311 Lstlpai~~~llG~~aG~iL~~--~~~~~~r~~~~l~~G~~l~~lg~ll~~-----~~~PinK~LWS~SfVl~t~ 378 (416)
+..++.+++..-|..+...... .++.++..+.++...++++++...+.. .+..++.+.+.++|-+.|+
T Consensus 132 l~l~nT~iLl~Ss~~~~~a~~~~~~~~~~~~~~~~L~~t~~lg~~F~~~q~~Ey~~~~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 132 LPLINTLILLCSGCAATWAHHALVHENNRRDVAWGLALAIALGALFTVFQAYEYSHAAFGFAGNIYGANFFMATG 206 (265)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHccHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH
Confidence 4556666777777766643322 122333333445454555444333321 2467788888888877765
No 3
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=13.64 E-value=79 Score=25.65 Aligned_cols=45 Identities=13% Similarity=0.357 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhc--------ccccccccCCChhHHHHHH
Q 014889 334 KDHRDRMLNWIILSSCLIGLGLSLDF--------VGMHLNKALYSLSYTCLTA 378 (416)
Q Consensus 334 ~~~~~r~~~~l~~G~~l~~lg~ll~~--------~~~PinK~LWS~SfVl~t~ 378 (416)
++++++.+.++...++++++...... .+...+.+.+.+.|-++|+
T Consensus 74 ~~~~~~~~~~L~~t~~lG~~Fl~~q~~e~~~l~~~g~~~~~~~~~s~fy~lTG 126 (185)
T d1fftc_ 74 KNNKSQVISWLALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVG 126 (185)
T ss_dssp TCCGGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSCCCCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHcccccccccchhhHHHHHH
Confidence 34455666676666666554444421 2577788888888866654
No 4
>d1x4pa1 a.217.1.1 (A:8-60) Arginine/serine-rich-splicing factor 14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.65 E-value=51 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHhcCCCcccc
Q 014889 10 DANDQLVIQISKSTSAPANE 29 (416)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~ 29 (416)
|+.+|||.||..+..++...
T Consensus 2 ~tIeqlV~~ii~G~LspkeR 21 (53)
T d1x4pa1 2 GTIDQLVKRVIEGSLSPKER 21 (53)
T ss_dssp HHHHHHHHHHHHTCSCHHHH
T ss_pred chHHHHHHHHHcCCCCHHHH
Confidence 78899999999988876543
No 5
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=9.75 E-value=1e+02 Score=19.55 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 014889 310 LLSSVMATVTCLIGLHFGHLI 330 (416)
Q Consensus 310 lLstlpai~~~llG~~aG~iL 330 (416)
-|||-|-+++..++..||-++
T Consensus 7 ylstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHH
Confidence 378999999999999999765
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.78 E-value=1.9e+02 Score=16.72 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=7.7
Q ss_pred ChhHHHHHHHHH
Q 014889 370 SLSYTCLTAGAS 381 (416)
Q Consensus 370 S~SfVl~t~G~a 381 (416)
|..||++.+++.
T Consensus 3 ~i~yv~ifac~i 14 (30)
T d2axtt1 3 TITYVFIFACII 14 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeehHHHHHHHH
Confidence 456788766643
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.67 E-value=7.9e+02 Score=20.08 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=18.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHh
Q 014889 308 EGLLSSVMATVTCLIGLHFGHLIV 331 (416)
Q Consensus 308 EGlLstlpai~~~llG~~aG~iL~ 331 (416)
-|++.++..++.++.....|.+..
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~D 84 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSD 84 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367778888888888888887664
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.56 E-value=3.4e+02 Score=16.00 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 014889 314 VMATVTCLIGLHFGHLIV 331 (416)
Q Consensus 314 lpai~~~llG~~aG~iL~ 331 (416)
+.-+.+.++|+..|-.+.
T Consensus 10 ~tmig~tl~glaigfvll 27 (34)
T d1q90m_ 10 LTMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 455677888888887664
No 9
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=2.38 E-value=1.9e+02 Score=21.93 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=9.1
Q ss_pred CCCCCCchhhhH
Q 014889 303 APFDPEGLLSSV 314 (416)
Q Consensus 303 ~~fDPEGlLstl 314 (416)
.-|||||+++-+
T Consensus 108 ~LyD~~g~~~~l 119 (125)
T d1knya2 108 PIYDSGGYLEKV 119 (125)
T ss_dssp EEEESSSHHHHH
T ss_pred EeecCcchHHHH
Confidence 348999988765
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.34 E-value=9.4e+02 Score=18.73 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=19.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHhc
Q 014889 309 GLLSSVMATVTCLIGLHFGHLIVH 332 (416)
Q Consensus 309 GlLstlpai~~~llG~~aG~iL~~ 332 (416)
|++.++..+...+.....|.+-.+
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr 69 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDK 69 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888976643
Done!