BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014890
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K2B|A Chain A, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|B Chain B, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|C Chain C, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|D Chain D, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|E Chain E, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|F Chain F, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|G Chain G, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|H Chain H, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|O Chain O, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3K2B|Q Chain Q, Crystal Structure Of Photosynthetic A4 Isoform
Glyceraldehyde-3- Phosphate Dehydrogenase Complexed With
Nad, From Arabidopsis Thaliana
pdb|3QV1|A Chain A, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|B Chain B, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|C Chain C, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|D Chain D, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|E Chain E, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3QV1|F Chain F, Crystal Structure Of The Binary Complex Of Photosyntetic
A4 Glyceraldehyde 3-Phosphate Dehydrogenase (Gapdh) With
Cp12-2, Both From Arabidopsis Thaliana.
pdb|3RVD|A Chain A, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|B Chain B, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|C Chain C, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|D Chain D, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|E Chain E, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|F Chain F, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|G Chain G, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|H Chain H, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|O Chain O, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana.
pdb|3RVD|Q Chain Q, Crystal Structure Of The Binary Complex, Obtained By
Soaking, Of Photosyntetic A4 Glyceraldehyde 3-Phosphate
Dehydrogenase (Gapdh) With Cp12-2, Both From Arabidopsis
Thaliana
Length = 337
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/350 (73%), Positives = 267/350 (76%), Gaps = 13/350 (3%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADV
Sbjct: 1 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
KP G ISVDGK+IQVVSNRNP LPW +LGID+VIEGTGVFVDREGAGKHI+AGAKKV
Sbjct: 61 KPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKV 120
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+ITAPGKGDIPTYVVGVNADAY DEPIISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 IITAPGKGDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKF---------- 170
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 171 ---GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKG 227
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
NGIALRVPTPN SKKTFAEEVNAAFR+SA+ ELKGIL VCDEPLVSVDF
Sbjct: 228 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRDSAEKELKGILDVCDEPLVSVDF 287
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
RC MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK
Sbjct: 288 RCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 337
>pdb|1RM5|O Chain O, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|A Chain A, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM5|B Chain B, Crystal Structure Of Mutant S188a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 262/349 (75%), Gaps = 13/349 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 170 --GIIKGTMTTTHSYTGDQRLLDAAHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NGIALRVPTPN SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFR
Sbjct: 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFR 287
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 288 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
>pdb|1NBO|O Chain O, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|A Chain A, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1NBO|B Chain B, The Dual Coenzyme Specificity Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase Interpreted By
The Crystal Structure Of A4 Isoform Complexed With Nad
pdb|1RM4|O Chain O, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|A Chain A, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM4|B Chain B, Crystal Structure Of Recombinant Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|2HKI|A Chain A, Crystal Structure Of Photosynthetic
Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform
pdb|2PKQ|P Chain P, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|R Chain R, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|S Chain S, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 337
Score = 496 bits (1278), Expect = e-141, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 262/349 (75%), Gaps = 13/349 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 170 --GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NGIALRVPTPN SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFR
Sbjct: 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFR 287
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 288 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
>pdb|2PKR|O Chain O, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|R Chain R, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|P Chain P, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|Q Chain Q, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|A Chain A, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|B Chain B, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|C Chain C, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|D Chain D, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|H Chain H, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|I Chain I, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|L Chain L, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKR|M Chain M, Crystal Structure Of (A+cte)4 Chimeric Form Of
Photosyntetic Glyceraldehyde-3-Phosphate Dehydrogenase,
Complexed With Nadp
Length = 365
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/349 (71%), Positives = 262/349 (75%), Gaps = 13/349 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 170 --GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NGIALRVPTPN SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFR
Sbjct: 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFR 287
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 288 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
>pdb|1RM3|O Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|A Chain A, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
pdb|1RM3|B Chain B, Crystal Structure Of Mutant T33a Of Photosynthetic
Glyceraldehyde-3- Phosphate Dehydrogenase A4 Isoform,
Complexed With Nadp
Length = 337
Score = 495 bits (1274), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/349 (71%), Positives = 261/349 (74%), Gaps = 13/349 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV IND GGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDAGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 170 --GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NGIALRVPTPN SKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFR
Sbjct: 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFR 287
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 288 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
>pdb|1JN0|O Chain O, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|A Chain A, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
pdb|1JN0|B Chain B, Crystal Structure Of The Non-Regulatory A4 Isoform Of
Spinach Chloroplast Glyceraldehyde-3-Phosphate
Dehydrogenase Complexed With Nadp
Length = 335
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 259/349 (74%), Gaps = 15/349 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHG KDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHG-KDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISV GKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 60 TAGDSAISV-GKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 119 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GIIKGTMTTTHSYTGDQ NIVPTST
Sbjct: 168 --GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPQLKGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NGIALRVPTPN SKKTFAEEVNAAFRESAD ELKGILSVCDEPLVS+DFR
Sbjct: 226 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADQELKGILSVCDEPLVSIDFR 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 286 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 334
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/351 (62%), Positives = 241/351 (68%), Gaps = 16/351 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ + S+DGK I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAGAKKV+
Sbjct: 61 IIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVI 120
Query: 188 ITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
ITAP KG DIPTYVVGVN Y D IISNASCTTNCLAPFVKVLD++
Sbjct: 121 ITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEEL--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI+KGTMTTTHSYTGDQ NIVPTST
Sbjct: 172 ----GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLK 227
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
NGIALRVPTPN K AE+VN AFR++A LKG+L VCD PLVSV
Sbjct: 228 GKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSV 287
Query: 365 DFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
DFRC MG DMVKV+AWYDNEWGYSQRVVDLAD+VAN W
Sbjct: 288 DFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKW 338
>pdb|3B1J|A Chain A, Crystal Structure Of Dehydrogenese
pdb|3B1J|B Chain B, Crystal Structure Of Dehydrogenese
pdb|3B1K|A Chain A, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|B Chain B, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|G Chain G, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B1K|H Chain H, Crystal Structure Of Dehydrogenese In The Absence Of
Copper
pdb|3B20|A Chain A, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|B Chain B, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|O Chain O, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|P Chain P, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|Q Chain Q, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
pdb|3B20|R Chain R, Crystal Structure Analysis Of Dehydrogenase Complexed With
Nad
Length = 339
Score = 343 bits (880), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 217/349 (62%), Gaps = 16/349 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVLI
Sbjct: 62 YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 189 TAPGKGD-IPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
TAPGKG+ + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 122 TAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF---------- 171
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GIIKGTMTTTHSYT DQ NIVPT+T
Sbjct: 172 ---GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKG 228
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
NGIALRVPTPN K T E+VN ++++ +KGI+ D PLVS DF
Sbjct: 229 KLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDF 288
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
R M D+VKVIAWYDNEWGYSQRVVDLA++ A W
Sbjct: 289 RGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKW 337
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 337 bits (865), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 180/346 (52%), Positives = 215/346 (62%), Gaps = 16/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS- 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVLI
Sbjct: 62 YDENSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121
Query: 189 TAPGKGD-IPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
TAPGK + + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 122 TAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF---------- 171
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GIIKGTMTTTHSYT DQ NIVPT+T
Sbjct: 172 ---GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELKG 228
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
NGIALRVPTPN K T E+VN ++++ +KGI+ D PLVS DF
Sbjct: 229 KLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSDF 288
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
R M D+VKVIAWYDNEWGYSQRVVDLA++ A
Sbjct: 289 RGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAA 334
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 157/346 (45%), Positives = 202/346 (58%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+NDTGG +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDTGGANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ +I+PT+T
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NG+A+RVPTPN K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>pdb|1GD1|O Chain O, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|P Chain P, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|Q Chain Q, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|1GD1|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate Dehydrogenase
From Bacillus Stearothermophilus At 1.8 Angstroms
Resolution
pdb|2GD1|O Chain O, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|P Chain P, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|Q Chain Q, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|2GD1|R Chain R, Coenzyme-Induced Conformational Changes In
Glyceraldehyde-3- Phosphate Dehydrogenase From Bacillus
Stearothermophillus
pdb|3CMC|O Chain O, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|P Chain P, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|Q Chain Q, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
pdb|3CMC|R Chain R, Thioacylenzyme Intermediate Of Bacillus Stearothermophilus
Phosphorylating Gapdh
Length = 334
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/346 (44%), Positives = 199/346 (57%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ +I+PT+T
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NG+A+RVPTPN K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>pdb|1DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|1DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|2DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|2DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Asp
32 Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 198/346 (57%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+N +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNGLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ +I+PT+T
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDASHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NG+A+RVPTPN K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>pdb|1NPT|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NPT|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+
pdb|1NQA|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
pdb|1NQA|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ala Complexed With Nad+ And D-
Glyceraldehyde-3-Phosphate
Length = 334
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 198/346 (57%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNAS TTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ +I+PT+T
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NG+A+RVPTPN K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>pdb|1NQ5|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQ5|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+
pdb|1NQO|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|A Chain A, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
pdb|1NQO|C Chain C, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Cys
149 Replaced By Ser Complexed With Nad+ And
D-Glyceraldehyde-3-Phosphate
Length = 334
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 198/346 (57%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R K+ +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNAS TTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASSTTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GI++G MTT HSYT DQ +I+PT+T
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
NG+A+RVPTPN K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 270 bits (691), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 150/342 (43%), Positives = 191/342 (55%), Gaps = 14/342 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R + RK+ +EVVAIND K +HLLKYDS F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + VDGK I+V + +P LPW DLG+D VIE TGVF +RE A H+QAGAKKV+IT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
AP KG+ T V+G N D KP+ IIS ASCTTN +AP VKVL +KF
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKF------------- 167
Query: 250 GIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXN 309
GI+ G +TT HSYT DQ NI+PT+T +
Sbjct: 168 GIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLD 227
Query: 310 GIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCX 369
G+A+RVPTP+ K+T EEVNA +E+ + LKGI+ DEP+VS D
Sbjct: 228 GMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGT 287
Query: 370 XXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
+G +VKV +WYDNE+GYS RVVD +++
Sbjct: 288 TFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 329
>pdb|2EP7|A Chain A, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
pdb|2EP7|B Chain B, Structural Study Of Project Id Aq_1065 From Aquifex
Aeolicus Vf5
Length = 342
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/353 (44%), Positives = 195/353 (55%), Gaps = 26/353 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR+F R GR++ +E+VAIND K +HLLKYDS GIF+ V+
Sbjct: 3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D I VDGK I+V + ++P +PWGDLG+D+VIE TGVF DRE A KH+Q GAKKV+I
Sbjct: 60 AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
TAP K T V+GVN + Y P E IISNASCTTNCLAP VKVL++ F
Sbjct: 120 TAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAF----------- 168
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
G+ KG M T H+YT DQ NIVPT+T
Sbjct: 169 --GVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGK 226
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADN-------ELKGILSVCDE 359
+G A RVP P+ +K + EEVN FRE+A LK IL C++
Sbjct: 227 LDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCED 286
Query: 360 PLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
P+VS D + D++V + AWYDNEWGYS R+ DL +A
Sbjct: 287 PIVSTDI-VGNPHSAIFDAPLTQVIDNLVHIAAWYDNEWGYSCRLRDLVIYLA 338
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 191/340 (56%), Gaps = 17/340 (5%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEA 124
+ A +VAINGFGRIGR R K+S E+VAIN + + +HL+KYD+ G F+
Sbjct: 1 SNAMTRVAINGFGRIGRMVFR--QAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDG 58
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
V+ D + VDGK+I++++NR+P LPW DLG+++VIE TG F +E A H++AGAK
Sbjct: 59 TVEAF-EDHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117
Query: 185 KVLITAPGKGDIPTYVVGVNADAYK-PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDR 243
KV++TAPGK + T VVGVN D +ISNASCTTNCLAP VKVLD++F
Sbjct: 118 KVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQF------- 170
Query: 244 IFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXX 303
GI G MTT H+YT DQ +I+PT+T
Sbjct: 171 ------GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPH 224
Query: 304 XXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS 363
+G+ALRVPTPN + E +N AF+ A+ LKGI+ +EPLVS
Sbjct: 225 LNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVS 284
Query: 364 VDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQR 403
+DF MGD VKV+AWYDNEWGYS+R
Sbjct: 285 IDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRR 324
>pdb|3DOC|A Chain A, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|B Chain B, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|C Chain C, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
pdb|3DOC|D Chain D, Crystal Structure Of Trka Glyceraldehyde-3-Phosphate
Dehydrogenase From Brucella Melitensis
Length = 335
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 189/342 (55%), Gaps = 18/342 (5%)
Query: 69 LKVAINGFGRIGRNFLRCW--HGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR GR D ++VVAIND G V+ +HLL+YDS G F +V
Sbjct: 3 VRVAINGFGRIGRNILRAIVESGRTD--IQVVAINDLGPVETNAHLLRYDSVHGRFPKEV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ G D I V I+V + RNP LPW + +D+ +E TG+F R+ A H++AGAK+V
Sbjct: 61 EVAG-DTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRV 119
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+++AP G T V GVN D D +ISNASCTTNCLAP +V LND I
Sbjct: 120 IVSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQV--------LNDTI-- 169
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GI KG MTT HSYTGDQ +++PTST
Sbjct: 170 ---GIEKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKG 226
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
+G+A+RVPTPN ++T EEVN A RE+A+ LKGIL DE LVS DF
Sbjct: 227 KLDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDF 286
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 408
M MV++++WYDNEWG+S R+ D A
Sbjct: 287 NHDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTA 328
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/347 (42%), Positives = 193/347 (55%), Gaps = 17/347 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR ++ K LE+VAIND G K +HL +YD+ G F +V
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAINDLGDAKTNAHLTQYDTAHGKFPGEVS 70
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V D + V+G I+V++NRNP LPWG+LG+D+V+E TG F +E A H++ GAKKV+
Sbjct: 71 -VDGDYLVVNGDRIRVLANRNPAELPWGELGVDVVMECTGFFTSKEKASAHLKGGAKKVI 129
Query: 188 ITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
I+APG D+ T V GVN D K + +ISNASCTTNCLAP VK LND+I
Sbjct: 130 ISAPGGKDVDATIVYGVNHDVLKAEHTVISNASCTTNCLAPLVK--------PLNDKI-- 179
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+ G MTT H+YT DQ + +PT T
Sbjct: 180 ---GLETGLMTTIHAYTNDQVLTDVYHEDLRRARSATHSQIPTKTGAAAAVGLVLPELNG 236
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
+G A+RVPT N + T A EVNA +E+++ LKGIL + PLVS+DF
Sbjct: 237 KLDGYAIRVPTINVSIVDLSFIAKRDTTAAEVNAIMKEASEGALKGILGYNEAPLVSIDF 296
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
G +VKV +WYDNEWG+S R++D A +AN
Sbjct: 297 NHNPASSTFDATLTKVSG-RLVKVSSWYDNEWGFSNRMLDTAIALAN 342
>pdb|3L0D|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
pdb|3L0D|B Chain B, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase From Bartonella Henselae With Bound Nad
Length = 356
Score = 251 bits (641), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 182/342 (53%), Gaps = 18/342 (5%)
Query: 69 LKVAINGFGRIGRNFLRCW--HGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR GR+D +EVVA+ND G V+ +HLL+YDS G F V
Sbjct: 24 VRVAINGFGRIGRNILRAIIESGRQD--IEVVALNDLGSVETNAHLLRYDSVHGCFPGTV 81
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ VG D I + +I+V + R+P LPW L ID+ +E TG+F R+ A H+ AGAK+V
Sbjct: 82 QVVG-DAIDIGSSLIKVFAERDPAQLPWKALDIDIALECTGIFTARDKASAHLDAGAKRV 140
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
L++AP +G T V GVN + +ISNASCTTNCLAP +VL
Sbjct: 141 LVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNT----------- 189
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GI KG MTT HSYTGDQ +++PTST
Sbjct: 190 --VGIEKGFMTTIHSYTGDQPVLDTMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKG 247
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
+G+++RVPTPN + T EE+N A R +A LKGIL DE LVS DF
Sbjct: 248 LLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGSLKGILDYTDEKLVSCDF 307
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 408
+ + +V+ WYDNEWG+S R+ D A
Sbjct: 308 NHNPHSAIFHNDQTKVIDGQLCRVLVWYDNEWGFSNRMCDTA 349
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 188/348 (54%), Gaps = 26/348 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+K+AINGFGRIGRN + R +++VAIND K +HLLKYDST G++ V+
Sbjct: 22 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE- 77
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFV----DREGAGKHI-QAG 182
DG I VDG+ I++++ R+P NLPW LGID+VIE TGVF D+ G H+ AG
Sbjct: 78 -SRDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAG 136
Query: 183 AKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLND 242
AKKV++T P K +I T V+GVN D +SNASCTTNCLAP KVL + F
Sbjct: 137 AKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESF------ 190
Query: 243 RIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXX 302
GI +G MTT H+YT DQ +I+PTST
Sbjct: 191 -------GIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLVLP 243
Query: 303 XXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADN-ELKGILSVCDEP 360
NG ++RVP P KK EE+N+ R++++ ELKGIL ++P
Sbjct: 244 ELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDP 303
Query: 361 LVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 408
+VS D + + + K+++WYDNE+GYS RVVDLA
Sbjct: 304 IVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLA 351
>pdb|1OBF|O Chain O, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution.
pdb|1OBF|P Chain P, The Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Alcaligenes Xylosoxidans At 1.7
Resolution
Length = 335
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 182/340 (53%), Gaps = 17/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR + G K +E+VAIND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G+ + V+G I+V +NRNP LPWG L +D+V+E TG F +E AG HI+ GAKKV+
Sbjct: 62 VNGSYMV-VNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 188 ITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
I+APG D+ T V GVN K + +ISNAS TTNCLAP VK L+ K
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNASXTTNCLAPLVKPLNDKL---------- 170
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+ G MTT H+YT +Q +++PT T
Sbjct: 171 ---GLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDG 227
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
NG A+RVPT N + T EEVN + +++ ELKGIL EPLVSVD+
Sbjct: 228 KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDY 287
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 406
G +VKV +WYDNEWG+S R++D
Sbjct: 288 NHDPASSTVDASLTKVSG-RLVKVSSWYDNEWGFSNRMLD 326
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/344 (40%), Positives = 183/344 (53%), Gaps = 19/344 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEV-A 56
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
TAP KG+ T V+GVN +AY P IISNASCTTN LAP +KVL++ F
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAF----------- 165
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
G+ K MTT HSYT DQ NI+PT+T
Sbjct: 166 --GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGR 223
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
+G+ALRVPT ++ AEEVNAA + +A+ LKGIL+ ++ +V D
Sbjct: 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIV 283
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
+G +MVKV AWYDNEWGY+ RV DL ++V
Sbjct: 284 MDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELV 326
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 185/346 (53%), Gaps = 23/346 (6%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDST G F
Sbjct: 1 MKVGINGFGRIGRQVFRILHERG---VEVALINDLTDNKTLAHLLKYDSTYGRFPG---A 54
Query: 129 VGTD--GISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
VG D + VDGK I+ + ++P +PW G+ +V+E TGVF D E A H++AGAKKV
Sbjct: 55 VGYDEENLYVDGKAIRATAIKDPREIPWKQAGVGVVVESTGVFTDGEKARAHLEAGAKKV 114
Query: 187 LITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+ITAP K + T V+GVN + Y P I+SNASCTTN LAP +KVL++ F
Sbjct: 115 IITAPAKNEDITVVLGVNHEQYDPAKHHILSNASCTTNSLAPVMKVLEKAF--------- 165
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
G+ K MTT HSYT DQ NI+PT+T
Sbjct: 166 ----GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAALNIIPTTTGAAKATALVLPSLK 221
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G+ALRVPTP ++ AEEVNAA + +A+ LKGIL+ ++ +V D
Sbjct: 222 GRFDGMALRVPTPTGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLRD 281
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
+G ++VKV AWYDNEWGY+ RV DL ++V
Sbjct: 282 IVMDPHSSIVDGKLTKAIG-NLVKVFAWYDNEWGYANRVADLVELV 326
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/344 (40%), Positives = 182/344 (52%), Gaps = 19/344 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEV-A 56
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
TAP KG+ T V+GVN +AY P IISNAS TTN LAP +KVL++ F
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASXTTNSLAPVMKVLEEAF----------- 165
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
G+ K MTT HSYT DQ NI+PT+T
Sbjct: 166 --GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGR 223
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
+G+ALRVPT ++ AEEVNAA + +A+ LKGIL+ ++ +V D
Sbjct: 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIV 283
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
+G +MVKV AWYDNEWGY+ RV DL ++V
Sbjct: 284 MDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELV 326
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 182/340 (53%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 120 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 166
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GII+G MTT H+ T Q NI+P+ST
Sbjct: 167 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
G+A RVPTPN K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 226 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ D+ VK+++WYDNE GYS +V+DL
Sbjct: 286 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 182/340 (53%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GII+G MTT H+ T Q NI+P+ST
Sbjct: 166 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 224
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
G+A RVPTPN K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 225 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 284
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ D+ VK+++WYDNE GYS +V+DL
Sbjct: 285 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 324
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 181/340 (53%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GII+G MTT H+ T Q NI+P+ST
Sbjct: 166 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 224
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
G+A RVPTPN K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 225 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 284
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ D+ VK+++WYD E GYS +V+DL
Sbjct: 285 GEVCTSVFDAKAGIALNDNFVKLVSWYDTETGYSNKVLDL 324
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 227 bits (579), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 182/340 (53%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNAS TTNCLAP KV++ F
Sbjct: 120 TGPSKDNTPMFVKGANFDKY-AGQDIVSNASXTTNCLAPLAKVINDNF------------ 166
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GII+G MTT H+ T Q NI+P+ST
Sbjct: 167 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 225
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
G+A RVPTPN K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 226 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 285
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ D+ VK+++WYDNE GYS +V+DL
Sbjct: 286 GEVXTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325
>pdb|3CPS|A Chain A, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|3CPS|B Chain B, Crystal Structure Of Cryptosporidium Parvum
Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 354
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 189/362 (52%), Gaps = 23/362 (6%)
Query: 57 SSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKY 115
SSG + Q L INGFGRIGR LR R D + VVAIND V+ ++LLKY
Sbjct: 8 SSGRENLYFQGTL--GINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKY 63
Query: 116 DSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
DS G F V+ G D + ++GKV++V ++P +PWG G +V E TGVF E A
Sbjct: 64 DSVHGNFNGTVEVSGKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKA 122
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQ 234
H++ GAKKV+I+AP K ++P YV+GVN Y P + +ISNASCTTNCLAP K+++
Sbjct: 123 SLHLKGGAKKVIISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIIND 182
Query: 235 KFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTST 291
KF GI++G MTT HS T +Q NI+P ST
Sbjct: 183 KF-------------GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPAST 229
Query: 292 XXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELK 351
G+A+RVPTP+ +K EE+ A +E+++ +K
Sbjct: 230 GAAKAVGKVIPALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMK 289
Query: 352 GILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
GI+ + +VS DF + D VK+I+WYDNE GYS R+VDLA V
Sbjct: 290 GIMGYTSDDVVSTDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYV 349
Query: 412 AN 413
A+
Sbjct: 350 AS 351
>pdb|1VSU|A Chain A, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|B Chain B, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|C Chain C, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSU|D Chain D, Crystal Structure Of Apo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|A Chain A, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|B Chain B, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|C Chain C, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
pdb|1VSV|D Chain D, Crystal Structure Of Holo-Glyceraldehyde 3-Phosphate
Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 184/348 (52%), Gaps = 21/348 (6%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPV 129
+ INGFGRIGR LR R D + VVAIND V+ ++LLKYDS G F V+
Sbjct: 25 LGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVS 82
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
G D + ++GKV++V ++P +PWG G +V E TGVF E A H++ GAKKV+I+
Sbjct: 83 GKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 190 APGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
AP K ++P YV+GVN Y P + +ISNASCTTNCLAP K+++ KF
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKF------------ 189
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI++G MTT HS T +Q NI+P ST
Sbjct: 190 -GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALN 248
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+A+RVPTP+ +K EE+ A +E+++ +KGI+ + +VS D
Sbjct: 249 GKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTD 308
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
F + D VK+I+WYDNE GYS R+VDLA VA+
Sbjct: 309 FIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVAS 356
>pdb|1YWG|O Chain O, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|P Chain P, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|Q Chain Q, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
pdb|1YWG|R Chain R, The Structure Of Glyceraldehyde-3-Phosphate Dehydrogenase
From Plasmodium Falciparum
Length = 337
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 180/354 (50%), Gaps = 22/354 (6%)
Query: 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEA 124
A K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F
Sbjct: 1 MAVTKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPC 58
Query: 125 DVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183
+V DG + G K + V + ++P +PWG +D+V E TGVF+ +E A H++ GA
Sbjct: 59 EV--THADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGA 116
Query: 184 KKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDR 243
KKV+++AP K D P YV+G+N Y + I+SNASCTTNCLAP KV++ +F
Sbjct: 117 KKVIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRF------- 169
Query: 244 IFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTXXXXXXXXX 300
GI++G MTT H+ T +Q NI+P ST
Sbjct: 170 ------GIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKV 223
Query: 301 XXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEP 360
G+A RVP K EEV +++A+ LKGIL ++
Sbjct: 224 LPELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDE 283
Query: 361 LVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
+VS DF + D+ K+++WYDNEWGYS RV+DLA + NN
Sbjct: 284 VVSQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITNN 337
>pdb|3CIF|A Chain A, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|B Chain B, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|C Chain C, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
pdb|3CIF|D Chain D, Crystal Structure Of C153s Mutant Glyceraldehyde
3-Phosphate Dehydrogenase From Cryptosporidium Parvum
Length = 359
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 183/348 (52%), Gaps = 21/348 (6%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPV 129
+ INGFGRIGR LR R D + VVAIND V+ ++LLKYDS G F V+
Sbjct: 25 LGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVS 82
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
G D + ++GKV++V ++P +PWG G +V E TGVF E A H++ GAKKV+I+
Sbjct: 83 GKD-LCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIIS 141
Query: 190 APGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
AP K ++P YV+GVN Y P + +ISNAS TTNCLAP K+++ KF
Sbjct: 142 APPKDNVPMYVMGVNNTEYDPSKFNVISNASSTTNCLAPLAKIINDKF------------ 189
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI++G MTT HS T +Q NI+P ST
Sbjct: 190 -GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIPALN 248
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+A+RVPTP+ +K EE+ A +E+++ +KGI+ + +VS D
Sbjct: 249 GKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVVSTD 308
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
F + D VK+I+WYDNE GYS R+VDLA VA+
Sbjct: 309 FIGCKYSSILDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVAS 356
>pdb|2I5P|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
pdb|2I5P|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Isoform 1 From K. Marxianus
Length = 342
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/346 (38%), Positives = 187/346 (54%), Gaps = 20/346 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 127
+ +AINGFGRIGR LR RK+ ++VVAIND V A+++ KYDST G ++ +V
Sbjct: 15 VSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVS 72
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G++ I ++GK + V ++P LPWG LG+D+ ++ TGVF + + A KHI AGAKKV+
Sbjct: 73 HDGSNLI-INGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVV 131
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAP K P +VVGVN D Y E I+SNASCTTNCLAP K+++ +F
Sbjct: 132 ITAPSK-TAPMFVVGVNEDKYN-GEKIVSNASCTTNCLAPIAKIINDEF----------- 178
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GI +G MTT HS T Q NI+P+ST
Sbjct: 179 --GIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQG 236
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPT + K +E+ AA ++ ++ +LK ++ ++ +VS DF
Sbjct: 237 KLTGMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDF 296
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+ VK++AWYDNE+GYS RVVDL + VA
Sbjct: 297 LGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 342
>pdb|2B4R|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4R|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|O Chain O, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|P Chain P, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|Q Chain Q, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
pdb|2B4T|R Chain R, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Plasmodium Falciparum At 2.25
Angstrom Resolution Reveals Intriguing Extra Electron
Density In The Active Site
Length = 345
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 176/344 (51%), Gaps = 22/344 (6%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F +V
Sbjct: 13 KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEV-- 68
Query: 129 VGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + G K + V + ++P +PWG +D+V E TGVF+ +E A H++ GAKKV+
Sbjct: 69 THADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVI 128
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
++AP K D P YV+G+N Y + I+SNASCTTNCLAP KV++ +F
Sbjct: 129 MSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRF----------- 177
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTXXXXXXXXXXXXX 304
GI++G MTT H+ T +Q NI+P ST
Sbjct: 178 --GIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLPEL 235
Query: 305 XXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
G+A RVP K EEV +++A+ LKGIL ++ +VS
Sbjct: 236 NGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVVSQ 295
Query: 365 DFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 408
DF + D+ K+++WYDNEWGYS RV+DLA
Sbjct: 296 DFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLA 339
>pdb|3PYM|A Chain A, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
pdb|3PYM|B Chain B, Structure Of Gapdh 3 From S.Cerevisiae At 2.0 A Resolution
Length = 332
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 180/346 (52%), Gaps = 19/346 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGR +R R + +EVVA+ND A+++ KYDST G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
I VDGK I R+P NLPWG +D+ I+ TGVF + + A KHI AGAKKV+
Sbjct: 60 H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAP P +V+GVN + Y D I+SNASCTTNCLAP KV++ F
Sbjct: 119 ITAPS-STAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAF----------- 166
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GI +G MTT HS T Q NI+P+ST
Sbjct: 167 --GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQG 224
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPT + +K+T +E+ + +A+ +LKG+L ++ +VS DF
Sbjct: 225 KLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDF 284
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+ VK+++WYDNE+GYS RVVDL + VA
Sbjct: 285 LGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
>pdb|4IQ8|A Chain A, Crystal Structure Of Glyceraldehyde-3-phosphate
Dehydrogenase 3 From Saccharomyces Cerevisiae
Length = 340
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 180/346 (52%), Gaps = 19/346 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ-ASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGR +R R + +EVVA+ND A+++ KYDST G + +V
Sbjct: 10 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 67
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
I VDGK I R+P NLPWG +D+ I+ TGVF + + A KHI AGAKKV+
Sbjct: 68 H-DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 126
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAP P +V+GVN + Y D I+SNASCTTNCLAP KV++ F
Sbjct: 127 ITAPS-STAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAF----------- 174
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GI +G MTT HS T Q NI+P+ST
Sbjct: 175 --GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQG 232
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPT + +K+T +E+ + +A+ +LKG+L ++ +VS DF
Sbjct: 233 KLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDF 292
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+ VK+++WYDNE+GYS RVVDL + VA
Sbjct: 293 LGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 338
>pdb|1SZJ|G Chain G, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1SZJ|R Chain R, Structure Of Holo-Glyceraldehyde-3-Phosphate-Dehydrogenase
From Palinurus Versicolor Refined 2.0 Angstrom
Resolution
pdb|1CRW|G Chain G, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
pdb|1CRW|R Chain R, Crystal Structure Of Apo-Glyceraldehyde-3-Phosphate
Dehydrogenase From Palinurus Versicolor At 2.0a
Resolution
Length = 333
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 175/341 (51%), Gaps = 22/341 (6%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 58 -AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
I+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 117 ISAP-SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENF----------- 164
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
I++G MTT H+ T Q NI+P+ST
Sbjct: 165 --EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDG 222
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPTPN K+ +++ AA + +++ L+G+L ++ +VS DF
Sbjct: 223 KLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDF 282
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ VKV++WYDNE+GYSQRV+DL
Sbjct: 283 TGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|3E6A|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E6A|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
Length = 336
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 177/343 (51%), Gaps = 19/343 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE-AD 125
K+K+ INGFGRIGR R +D +E+VA+ND +++ KYD+ G ++ +D
Sbjct: 2 KIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 59
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
+K + + + K + V RNP +PW + G + V+E TGVF D+E A H++ GAKK
Sbjct: 60 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 119
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
V+I+AP K D P +V GVN D Y D I+SNASCTTNCLAP KV+ F
Sbjct: 120 VVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNF--------- 169
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXX 304
GII+G MTT H+ T Q NI+P+ST
Sbjct: 170 ----GIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDL 225
Query: 305 XXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
G++ RVPT + K + + +A + +++ +LKGI+ +E LVS
Sbjct: 226 NGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVST 285
Query: 365 DFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
DF + D+ VK++AWYDNEWGYS RV+DL
Sbjct: 286 DFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDL 328
>pdb|3E5R|O Chain O, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|A Chain A, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|B Chain B, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3E5R|C Chain C, Crystal Structure And Functional Analysis Of
Glyceraldehyde- 3-Phosphate Dehydrogenase From Oryza
Sativa
pdb|3V1Y|O Chain O, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|A Chain A, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|B Chain B, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
pdb|3V1Y|C Chain C, Crystal Structures Of Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes With Nad
Length = 337
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 177/343 (51%), Gaps = 19/343 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE-AD 125
K+K+ INGFGRIGR R +D +E+VA+ND +++ KYD+ G ++ +D
Sbjct: 3 KIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHSD 60
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
+K + + + K + V RNP +PW + G + V+E TGVF D+E A H++ GAKK
Sbjct: 61 IKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKK 120
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
V+I+AP K D P +V GVN D Y D I+SNASCTTNCLAP KV+ F
Sbjct: 121 VVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNF--------- 170
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXX 304
GII+G MTT H+ T Q NI+P+ST
Sbjct: 171 ----GIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDL 226
Query: 305 XXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
G++ RVPT + K + + +A + +++ +LKGI+ +E LVS
Sbjct: 227 NGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVST 286
Query: 365 DFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
DF + D+ VK++AWYDNEWGYS RV+DL
Sbjct: 287 DFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDL 329
>pdb|1DC4|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC4|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
Length = 330
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 177/340 (52%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND ++ LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYXAYXLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV+
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVX 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPXFVKGANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
GII+G TT H+ T Q NI+P+ST
Sbjct: 166 -GIIEGLXTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 224
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
G A RVPTPN K E++ AA + +A+ E KG+L ++ +VS DF
Sbjct: 225 LTGXAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEXKGVLGYTEDDVVSTDFN 284
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ D+ VK+++WYDNE GYS +V+DL
Sbjct: 285 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 324
>pdb|1IHX|A Chain A, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|B Chain B, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|C Chain C, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHX|D Chain D, Crystal Structure Of Two D-Glyceraldehyde-3-Phosphate
Dehydrogenase Complexes: A Case Of Asymmetry
pdb|1IHY|A Chain A, Gapdh Complexed With Adp-Ribose
pdb|1IHY|B Chain B, Gapdh Complexed With Adp-Ribose
pdb|1IHY|C Chain C, Gapdh Complexed With Adp-Ribose
pdb|1IHY|D Chain D, Gapdh Complexed With Adp-Ribose
Length = 333
Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 174/340 (51%), Gaps = 20/340 (5%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRT---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+I
Sbjct: 58 VEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 118 SAP-SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENF------------ 164
Query: 249 AGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXXX 307
I++G MTT H+ T Q NI+P+ST
Sbjct: 165 -EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGK 223
Query: 308 XNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
G+A RVPTPN K+ +++ AA + +++ L+G+L ++ +VS DF
Sbjct: 224 LTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGVLGYTEDDVVSCDFT 283
Query: 368 CXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ VKV++WYDNE+GYSQRV+DL
Sbjct: 284 GDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|1K3T|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1K3T|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi Complexed With
Chalepin, A Coumarin Derivative Inhibitor
pdb|1ML3|A Chain A, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|B Chain B, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|C Chain C, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1ML3|D Chain D, Evidences For A Flip-Flop Catalytic Mechanism Of
Trypanosoma Cruzi Glyceraldehyde-3-Phosphate
Dehydrogenase, From Its Crystal Structure In Complex
With Reacted Irreversible Inhibitor
2-(2-Phosphono-Ethyl)-Acrylic Acid 4-Nitro-Phenyl Ester
pdb|1QXS|C Chain C, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|D Chain D, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|A Chain A, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|1QXS|B Chain B, Crystal Structure Of Trypanosoma Cruzi Glyceraldehyde-3-
Phosphate Dehydrogenase Complexed With An Analogue Of
1,3- Bisphospho-D-Glyceric Acid
pdb|3DMT|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3DMT|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
pdb|3IDS|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|D Chain D, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
pdb|3IDS|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetamide Inhibitor
Length = 359
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 29/362 (8%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+ +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 126 VKPVGT-------DGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V + D + V+G +++ V + RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T V+GVN Y P E ++SNASCTTNCLAP V VL ++
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEG 182
Query: 237 VTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXX 295
G+ G MTT HSYT Q NI+P++T
Sbjct: 183 F------------GVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 230
Query: 296 XXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILS 355
G++ RVPTP+ ++ T +E++AA + ++ +KGIL
Sbjct: 231 AVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILG 290
Query: 356 VCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
DE LVS DF R K+++WYDNEWGYS RVVDL +
Sbjct: 291 YTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Query: 412 AN 413
A+
Sbjct: 351 AS 352
>pdb|1DSS|G Chain G, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
pdb|1DSS|R Chain R, Structure Of Active-Site Carboxymethylated
D-Glyceraldehyde-3- Phosphate Dehydrogenase From
Palinurus Versicolor
Length = 333
Score = 207 bits (527), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 174/341 (51%), Gaps = 22/341 (6%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRA---ALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 58 -AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVI 116
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
I+AP D P +V GVN + Y D ++SNAS TTNCLAP KVL + F
Sbjct: 117 ISAP-SADAPMFVCGVNLEKYSKDMKVVSNASXTTNCLAPVAKVLHENF----------- 164
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
I++G MTT H+ T Q NI+P+ST
Sbjct: 165 --EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDG 222
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPTPN K+ +++ AA + +++ L+G+L ++ +VS DF
Sbjct: 223 KLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDF 282
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ VKV++WYDNE+GYSQRV+DL
Sbjct: 283 TGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 182/363 (50%), Gaps = 29/363 (7%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +K+D+ G +
Sbjct: 1 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ V + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 61 YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQ 234
HI+ GAKKV+I+AP G T V+GVN Y P ++SNASCTTNCLAP V VL +
Sbjct: 121 EGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTK 180
Query: 235 KFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXX 293
+ GI G MTT HSYT Q NI+P++T
Sbjct: 181 ENF------------GIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGA 228
Query: 294 XXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGI 353
G++ RVPTP+ ++ T +E++ A +++A +KGI
Sbjct: 229 AKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGI 288
Query: 354 LSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 409
L DE LVS DF R KV++WYDNEW YS RVVDL
Sbjct: 289 LGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVR 348
Query: 410 IVA 412
+A
Sbjct: 349 YMA 351
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 182/363 (50%), Gaps = 29/363 (7%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +K+D+ G +
Sbjct: 1 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPK 60
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ V + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 61 YTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKA 120
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQ 234
HI+ GAKKV+I+AP G T V+GVN Y P ++SNASCTTNCLAP V VL +
Sbjct: 121 EGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTK 180
Query: 235 KFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXX 293
+ GI G MTT HSYT Q NI+P++T
Sbjct: 181 ENF------------GIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGA 228
Query: 294 XXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGI 353
G++ RVPTP+ ++ T +E++ A +++A +KGI
Sbjct: 229 AKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGI 288
Query: 354 LSVCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 409
L DE LVS DF R KV++WYDNEW YS RVVDL
Sbjct: 289 LGFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVR 348
Query: 410 IVA 412
+A
Sbjct: 349 YMA 351
>pdb|3STH|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
pdb|3STH|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Toxoplasma Gondii
Length = 361
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/349 (36%), Positives = 181/349 (51%), Gaps = 23/349 (6%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R R D +EV+AIND + +LL+YDS G + +V
Sbjct: 25 KLGINGFGRIGRLVFRAAMERGD--VEVLAINDPFMSLDYMVYLLRYDSVHGHYPGEVSH 82
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + V GK + V + + P +PWG G+ + E TG+F+ +E A H+ GAKKV+
Sbjct: 83 --KDGKLIVGGKAVTVFNEKEPTAIPWGQAGVHYICESTGIFLTKEKAQAHLTNGAKKVI 140
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
++AP K D P +V+GVN D YK + I+SNASCTTNCLAP K++ KF
Sbjct: 141 MSAPPKDDTPMFVMGVNNDQYKSSDVIVSNASCTTNCLAPLAKIVHDKF----------- 189
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXXX---XXXXXXXNIVPTSTXXXXXXXXXXXXX 304
GI++G MTT H+ T +Q NI+P ST
Sbjct: 190 --GIVEGLMTTVHAMTANQLTVDGPSKGGKDWRAGRSAGVNIIPASTGAAKAVGKIIPSL 247
Query: 305 XXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVS 363
G+A RVP P+ +K E++ AA +E+A + +KGI+S DE +VS
Sbjct: 248 NGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEDIVAAVKEAATSGPMKGIISYTDEEVVS 307
Query: 364 VDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF + D VK+++WYDNEWGYS R+V+LA ++
Sbjct: 308 SDFVHCKFSSVFDINAGIMLNDTFVKLVSWYDNEWGYSNRLVELAHYMS 356
>pdb|2XF8|A Chain A, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|B Chain B, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|C Chain C, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|D Chain D, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|E Chain E, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|F Chain F, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|G Chain G, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|H Chain H, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|I Chain I, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|J Chain J, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|K Chain K, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|L Chain L, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|M Chain M, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|N Chain N, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|O Chain O, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
pdb|2XF8|P Chain P, Structure Of The D-Erythrose-4-Phosphate Dehydrogenase
From E.Coli In Complex With A Nad Cofactor Analog (3-
Chloroacetyl Adenine Pyridine Dinucleotide) And Sulfate
Anion
Length = 338
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 172/341 (50%), Gaps = 18/341 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + GR+ + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 2 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 61 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 119
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 120 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAY--------- 170
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI GT+TT HS DQ +I+P T
Sbjct: 171 ----GIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFN 226
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
IA+RVPT N K A EVN +++A GI+ + PLVSVD
Sbjct: 227 DRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVD 286
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 406
F G ++K + W DNEWG++ R++D
Sbjct: 287 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 327
>pdb|2X5J|O Chain O, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|P Chain P, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|Q Chain Q, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5J|R Chain R, Crystal Structure Of The Apoform Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 172/341 (50%), Gaps = 18/341 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + GR+ + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 62 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAY--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI GT+TT HS DQ +I+P T
Sbjct: 172 ----GIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFN 227
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
IA+RVPT N K A EVN +++A GI+ + PLVSVD
Sbjct: 228 DRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVD 287
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 406
F G ++K + W DNEWG++ R++D
Sbjct: 288 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
>pdb|1GPD|G Chain G, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
pdb|1GPD|R Chain R, Studies Of Asymmetry In The Three-Dimensional Structure Of
Lobster D- Glyceraldehyde-3-Phosphate Dehydrogenase
Length = 334
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 173/341 (50%), Gaps = 22/341 (6%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 3 KIGINGFGRIGRLVLR---AALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 59
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 60 --EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVV 117
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
I+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 118 ISAP-SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENF----------- 165
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
I++G MTT H+ T Q NI+P+ST
Sbjct: 166 --EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDG 223
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPTP+ K+ +++ AA + +++ L+G L ++ +VS DF
Sbjct: 224 KLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDF 283
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ VKV++WYDNE+GYSQRV+DL
Sbjct: 284 IGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 324
>pdb|4GPD|1 Chain 1, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|2 Chain 2, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|3 Chain 3, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
pdb|4GPD|4 Chain 4, The Structure Of Lobster Apo-D-Glyceraldehyde-3-Phosphate
Dehydrogenase At 3.0 Angstroms Resolution
Length = 333
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 173/341 (50%), Gaps = 22/341 (6%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLR---AALSCGAQVVAVNDPFIALEYMVYMFKYDSTHGVFKGEVKM 58
Query: 129 VGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
DG + VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+
Sbjct: 59 --EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVV 116
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
I+AP D P +V GVN + Y D ++SNASCTTNCLAP KVL + F
Sbjct: 117 ISAP-SADAPMFVCGVNLEKYSKDMTVVSNASCTTNCLAPVAKVLHENF----------- 164
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
I++G MTT H+ T Q NI+P+ST
Sbjct: 165 --EIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDG 222
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPTP+ K+ +++ AA + +++ L+G L ++ +VS DF
Sbjct: 223 KLTGMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDF 282
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ VKV++WYDNE+GYSQRV+DL
Sbjct: 283 IGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDL 323
>pdb|1J0X|O Chain O, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|P Chain P, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|Q Chain Q, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
pdb|1J0X|R Chain R, Crystal Structure Of The Rabbit Muscle Glyceraldehyde-3-
Phosphate Dehydrogenase (Gapdh)
Length = 332
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 169/341 (49%), Gaps = 19/341 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 127
+KV +NGFGRIGR R ++VVAIND + ++ +YDST G F VK
Sbjct: 1 VKVGVNGFGRIGRLVTRA--AFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 58
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ ++GK I + R+P N+ WGD G + V+E TGVF E AG H++ GAK+V+
Sbjct: 59 -AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 117
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
I+AP D P +V+GVN + Y I+SNAS TTNCLAP KV+ F
Sbjct: 118 ISAP-SADAPMFVMGVNHEKYDNSLKIVSNASXTTNCLAPLAKVIHDHF----------- 165
Query: 248 CAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
GI++G MTT H+ T Q NI+P ST
Sbjct: 166 --GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNG 223
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
G+A RVPTPN K +++ +++++ LKGIL ++ +VS DF
Sbjct: 224 KLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDF 283
Query: 367 RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+ D VK+I+WYDNE+GYS RVVDL
Sbjct: 284 NSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 324
>pdb|2X0N|A Chain A, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|B Chain B, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|O Chain O, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|P Chain P, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|Q Chain Q, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
pdb|2X0N|R Chain R, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Brucei Determined From
Laue Data
Length = 359
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 182/361 (50%), Gaps = 29/361 (8%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ +KYDS G F+
Sbjct: 3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHS 62
Query: 126 V-----KP--VGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V KP D + V+G +++ V + RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T+V+GVN + Y P E ++SNASCTTNCLAP V VL ++
Sbjct: 123 HLRGGARKVVISAPASGGAKTFVMGVNHNNYNPREQHVVSNASCTTNCLAPLVHVLVKEG 182
Query: 237 VTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXX 295
GI G MTT HSYT Q NI+P++T
Sbjct: 183 F------------GISTGLMTTVHSYTATQKTVDGVSVKDWRGGRAAALNIIPSTTGAAK 230
Query: 296 XXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILS 355
G+A RVPT + ++ T +E++AA + ++ +K IL
Sbjct: 231 AVGMVIPSTQGKLTGMAFRVPTADVSVVDLTFIATRDTSIKEIDAALKRASKTYMKNILG 290
Query: 356 VCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
DE LVS DF R K+++WYDNEWGYS RVVDL +
Sbjct: 291 YTDEELVSADFISDSRSSIYDSKATLQNNLPNERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Query: 412 A 412
A
Sbjct: 351 A 351
>pdb|3GPD|R Chain R, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
pdb|3GPD|G Chain G, Twinning In Crystals Of Human Skeletal Muscle
D-Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 334
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 171/343 (49%), Gaps = 21/343 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADV 126
K+KV ++GFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 2 KVKVGVDGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 59
Query: 127 KPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
K DG + +DGK I + R+P N+ WGD G V+E TGVF E AG H++ GAK+
Sbjct: 60 K--AEDGKLVIDGKAITIFQERDPENIKWGDAGTAYVVESTGVFTTMEKAGAHLKGGAKR 117
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
++I+AP D P +V+GVN Y IISNASCTTNCLAP KV+ F
Sbjct: 118 IVISAP-SADAPMFVMGVNHFKYANSLKIISNASCTTNCLAPLAKVIHDHF--------- 167
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXX 304
GI++G MTT H+ T Q N++P ST
Sbjct: 168 ----GIVEGLMTTVHAITATQKTVDSPSGKLWRGGRGAAQNLIPASTGAAKAVGKVIPEL 223
Query: 305 XXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
G+A RVPT N K +++ +E+++ LKGIL ++ +VS
Sbjct: 224 DGKLTGMAFRVPTANVSVLDLTCRLEKPAKYDDIKKVVKEASEGPLKGILGYTEDEVVSD 283
Query: 365 DFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
DF + D VK+++WYDNE+GYS+RVVDL
Sbjct: 284 DFNGSNHSSIFDAGAGIELNDTFVKLVSWYDNEFGYSERVVDL 326
>pdb|1ZNQ|O Chain O, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|P Chain P, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|R Chain R, Crsytal Structure Of Human Liver Gapdh
pdb|1ZNQ|Q Chain Q, Crsytal Structure Of Human Liver Gapdh
Length = 338
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 167/342 (48%), Gaps = 19/342 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADV 126
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 6 KVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 63
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
K + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+V
Sbjct: 64 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 122
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+I+AP D P +V+GVN + Y IISNASCTTNCLAP KV+ F
Sbjct: 123 IISAP-SADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNF---------- 171
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI++G MTT H+ T Q NI+P ST
Sbjct: 172 ---GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELN 228
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+A RVPT N K +++ +++++ LKGIL + +VS D
Sbjct: 229 GKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSD 288
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
F + D VK+I+WYDNE+GYS RVVDL
Sbjct: 289 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 330
>pdb|1U8F|O Chain O, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|P Chain P, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|Q Chain Q, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
pdb|1U8F|R Chain R, Crystal Structure Of Human Placental Glyceraldehyde-3-
Phosphate Dehydrogenase At 1.75 Resolution
Length = 335
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 167/342 (48%), Gaps = 19/342 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADV 126
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 3 KVKVGVNGFGRIGRLVTRA--AFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
K + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+V
Sbjct: 61 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 119
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+I+AP D P +V+GVN + Y IISNASCTTNCLAP KV+ F
Sbjct: 120 IISAP-SADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI++G MTT H+ T Q NI+P ST
Sbjct: 169 ---GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELN 225
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+A RVPT N K +++ +++++ LKGIL + +VS D
Sbjct: 226 GKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSD 285
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
F + D VK+I+WYDNE+GYS RVVDL
Sbjct: 286 FNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDL 327
>pdb|3DMT|C Chain C, Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Trypanosoma Cruzi In Complex With The
Irreversible Iodoacetate Inhibitor
Length = 359
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 182/362 (50%), Gaps = 29/362 (8%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+ +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 126 VKPVGT-------DGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V + D + V+G +++ V + RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T V+GVN Y P E ++SNAS TTNCLAP V VL ++
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASXTTNCLAPIVHVLVKEG 182
Query: 237 VTQLNDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXX 295
G+ G MTT HSYT Q NI+P++T
Sbjct: 183 F------------GVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 230
Query: 296 XXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILS 355
G++ RVPTP+ ++ T +E++AA + ++ +KGIL
Sbjct: 231 AVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILG 290
Query: 356 VCDEPLVSVDF----RCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
DE LVS DF R K+++WYDNEWGYS RVVDL +
Sbjct: 291 YTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Query: 412 AN 413
A+
Sbjct: 351 AS 352
>pdb|2X5K|O Chain O, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|P Chain P, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|Q Chain Q, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
pdb|2X5K|R Chain R, Structure Of An Active Site Mutant Of The
D-Erythrose-4-Phosphate Dehydrogenase From E. Coli
Length = 339
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 170/341 (49%), Gaps = 18/341 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + GR+ + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 62 RQ-ERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNAS TTN + P +K+LD +
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASATTNSIIPVIKLLDDAY--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI GT+TT HS DQ +I+P T
Sbjct: 172 ----GIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFN 227
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
IA+RVPT N K A EVN +++A GI+ + PLVSVD
Sbjct: 228 DRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVD 287
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 406
F G ++K + W DNEWG++ R++D
Sbjct: 288 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 173/348 (49%), Gaps = 21/348 (6%)
Query: 63 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGI 121
V+ +L V INGFGRIGR LR + ++VVA+ND + ++ KYDST G
Sbjct: 2 VSVARELTVGINGFGRIGRLVLRAC---MEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGR 58
Query: 122 FEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA 181
++ V+ + VD I V + P +PW +G V+E TGV++ + A HI A
Sbjct: 59 YKGSVE-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISA 117
Query: 182 GAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQL 240
GA++V+I+AP D P +V+GVN + Y P I+SNASCTTNCLAP KV+ ++F
Sbjct: 118 GAQRVVISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERF---- 172
Query: 241 NDRIFPMCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXX 299
GI++G MTT HSYT Q NI+P ST
Sbjct: 173 ---------GIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTK 223
Query: 300 XXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDE 359
G+A RVPTP+ ++ + A + +A + GIL+ ++
Sbjct: 224 VIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTED 283
Query: 360 PLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
+VS DF + D+ VK+I+WYDNE+GYS RVVDL
Sbjct: 284 EVVSTDFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDL 331
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/342 (34%), Positives = 168/342 (49%), Gaps = 21/342 (6%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 127
+KV INGFGRIGR LR + + VVA+ND + ++ KYDST G ++ V+
Sbjct: 2 VKVGINGFGRIGRLVLRVC---MEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVE 58
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ VD I V + P +PW +G V+E TGV++ E A HI +GA++V+
Sbjct: 59 H-KNGRLVVDNLEINVFQXKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVI 117
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+TAP D P V+GVN Y P ++SNAS TTNCLAP KV+ ++F
Sbjct: 118 VTAPSP-DAPMLVMGVNEKDYNPGSMTVVSNASXTTNCLAPLAKVIHERF---------- 166
Query: 247 MCAGIIKGTMTTTHSYTGDQXXXXXXXXXX-XXXXXXXXNIVPTSTXXXXXXXXXXXXXX 305
GI++G MTT H+YT Q NI+P+ST
Sbjct: 167 ---GIVEGLMTTVHAYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELN 223
Query: 306 XXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+A RVPTPN ++ + A + +A + GIL+ ++ +VS D
Sbjct: 224 GKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTD 283
Query: 366 FRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 407
F + D+ VK+++WYDNE+GYS RVVDL
Sbjct: 284 FNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDL 325
>pdb|3LC7|O Chain O, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|R Chain R, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|Q Chain Q, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
pdb|3LC7|P Chain P, Crystal Structure Of Apo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicllin Resistant
Staphylococcus Aureus (Mrsa252)
Length = 339
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 167/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 6 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 63
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 64 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 122
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 123 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 170
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT H+YTGDQ NI+P ST
Sbjct: 171 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 229
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 230 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 285
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 286 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 328
>pdb|3VAZ|P Chain P, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|R Chain R, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|O Chain O, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|Q Chain Q, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|B Chain B, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
pdb|3VAZ|A Chain A, Crystal Structure Of Staphylococcal Gapdh1 In A Hexagonal
Space Group
Length = 344
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 167/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 11 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 68
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 69 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 127
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 128 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 175
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT H+YTGDQ NI+P ST
Sbjct: 176 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 234
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 235 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 290
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 291 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 333
>pdb|3LVF|P Chain P, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|R Chain R, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|O Chain O, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
pdb|3LVF|Q Chain Q, Crystal Structure Of Holo Glyceraldehyde-3-Phosphate
Dehydrogenase 1 (Gapdh1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252 At 1.7 Angstrom Resolution
Length = 338
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 167/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 5 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 62
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 63 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 169
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT H+YTGDQ NI+P ST
Sbjct: 170 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 228
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 229 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 284
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 285 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 327
>pdb|3K73|Q Chain Q, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|O Chain O, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|P Chain P, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3K73|R Chain R, Crystal Structure Of Phosphate Bound Holo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.5 Angstrom Resolution
pdb|3L6O|Q Chain Q, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|P Chain P, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|R Chain R, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3L6O|O Chain O, Crystal Structure Of Phosphate Bound Apo
Glyceraldehyde-3-Phosphate Dehydrogenase 1 From Mrsa252
At 2.2 Angstrom Resolution
pdb|3LC2|O Chain O, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|Q Chain Q, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|R Chain R, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
pdb|3LC2|P Chain P, Crystal Structure Of Thioacyl-Glyceraldehyde-3-Phosphate
Dehydrogenase 1(Gapdh 1) From Methicillin Resistant
Staphylococcus Aureus Mrsa252
Length = 336
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 167/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 VD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT H+YTGDQ NI+P ST
Sbjct: 168 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 226
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 227 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 282
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 283 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 325
>pdb|3LC1|P Chain P, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|R Chain R, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|O Chain O, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution.
pdb|3LC1|Q Chain Q, Crystal Structure Of H178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad At
2.0 Angstrom Resolution
Length = 336
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 167/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFR--RIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 VD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT ++YTGDQ NI+P ST
Sbjct: 168 -GLVEGLMTTINAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 226
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 227 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 282
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 283 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 325
>pdb|3HQ4|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3HQ4|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh1)
Complexed With Nad From Staphylococcus Aureus Mrsa252 At
2.2 Angstrom Resolution
pdb|3KV3|O Chain O, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|Q Chain Q, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|R Chain R, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
pdb|3KV3|P Chain P, Crystal Structure Of C151s Mutant Of
Glyceraldehyde-3-Phosphate Dehydrogenase 1 (Gapdh 1)from
Methicillin Resistant Staphylococcus Aureus Mrsa252
Complexed With Nad And G3p
Length = 336
Score = 178 bits (452), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 166/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 VD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S AS TTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT H+YTGDQ NI+P ST
Sbjct: 168 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 226
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 227 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 282
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 283 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 325
>pdb|3K9Q|Q Chain Q, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|O Chain O, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|P Chain P, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3K9Q|R Chain R, Crsytal Strcuture Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 From Methicillin Resistant
Staphylococcus Aureus (Mrsa252) At 2.5 Angstrom
Resolution
pdb|3L4S|Q Chain Q, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|P Chain P, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|O Chain O, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
pdb|3L4S|R Chain R, Crystal Structure Of C151g Mutant Of Glyceraldehyde
3-Phosphate Dehydrogenase 1 (Gapdh1) From Methicillin
Resistant Staphylococcus Aureus Mrsa252 Complexed With
Nad And G3p
Length = 336
Score = 177 bits (450), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 126/343 (36%), Positives = 166/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 V-DGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S AS TTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASGTTNSLAPVAKVLNDDF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT H+YTGDQ NI+P ST
Sbjct: 168 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 226
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 227 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 282
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 283 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 325
>pdb|3KSD|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSD|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-phosphate Dehydrogenase 1 (gapdh1) From
Staphylococcus Aureus Mrsa252 Complexed With Nad At 2.2
Angstrom Resolution
pdb|3KSZ|O Chain O, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|P Chain P, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|R Chain R, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
pdb|3KSZ|Q Chain Q, Crystal Structure Of C151s+h178n Mutant Of
Glyceraldehyde-3-Phosphate- Dehydrogenase 1 (Gapdh 1)
From Staphylococcus Aureus Mrsa252 Complexed With Nad
And G3p
Length = 336
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 166/343 (48%), Gaps = 26/343 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R ++ LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 3 VKVAINGFGRIGRLAFRRI--QEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 61 VD-GGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S AS TTN LAP KVL+ F
Sbjct: 120 SAPATGDLKTIVFNTNHQELDGSETVVSGASSTTNSLAPVAKVLNDDF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQXXXXX--XXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXX 306
G+++G MTT ++YTGDQ NI+P ST
Sbjct: 168 -GLVEGLMTTINAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 226
Query: 307 XXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADNELKGILSVCDEPLVSVD 365
+G A RVP K+ E+VN A + +A NE G ++ +VS D
Sbjct: 227 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFGY---TEDEIVSSD 282
Query: 366 FRCXXXXXXXXXXXXXXM--GD-DMVKVIAWYDNEWGYSQRVV 405
M GD +VKV AWYDNE Y+ ++V
Sbjct: 283 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLV 325
>pdb|2AT3|X Chain X, 1.00 A Crystal Structure Of L123vL133V MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Imidazole At Ph 5.6
Length = 184
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SY0|A Chain A, 1.15 A Crystal Structure Of T121v Mutant Of Nitrophorin
4 From Rhodnius Prolixus
pdb|1SY1|A Chain A, 1.0 A Crystal Structure Of T121v Mutant Of Nitrophorin 4
Complexed With Nitric Oxide
Length = 184
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|2AT0|X Chain X, 1.00 A Crystal Structure Of L133v Mutant Of Nitrophorin
4 From Rhodnius Prolixus Complexed With Nitric Oxide At
Ph 5.6
pdb|3C76|X Chain X, 1.07 A Crystal Structure Of L133v Mutant Of Nitrophorin
4 From Rhodnius Prolixus Complexed With Ammonia At Ph
7.5
Length = 184
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1NP4|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1EQD|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With Cn
pdb|1ERX|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With No
pdb|1D3S|A Chain A, 1.4 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixis At Ph5.6.
pdb|1D2U|A Chain A, 1.15 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus
pdb|1IKE|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Histamine At 1.5 A Resolution
pdb|1IKJ|A Chain A, 1.27 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Imidazole
pdb|1KOI|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At 1.08 A
Resolution
pdb|1ML7|A Chain A, Crystal Structure Of Nitrophorin 4 Complexed With 4-
Iodopyrazole
pdb|1U0X|A Chain A, Crystal Structure Of Nitrophorin 4 Under Pressure Of
Xenon (200 Psi)
pdb|1X8N|A Chain A, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 7.4
pdb|1X8O|A Chain A, 1.01 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitric Oxide At Ph 5.6
pdb|1X8P|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Ammonia At Ph 7.4
pdb|1X8Q|A Chain A, 0.85 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus In Complex With Water At Ph 5.6
pdb|1YWA|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With Co At Ph 5.6
pdb|1YWB|A Chain A, 0.9 A Structure Of Np4 From Rhodnius Prolixus Complexed
With No At Ph 5.6
pdb|1YWC|A Chain A, Structure Of The Ferrous Co Complex Of Np4 From Rhodnius
Prolixus At Ph 7.0
pdb|1YWD|A Chain A, 1.08 A Structure Of Ferrous Np4 (Aquo Complex)
pdb|2AT5|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Nitric Oxide At Ph 5.6
pdb|2AT6|X Chain X, 1.22 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Water At Ph 5.6
pdb|2AT8|X Chain X, 0.96 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Nitric Oxide At Ph
5.6
pdb|2OFM|X Chain X, 1.11 A Crystal Structure Of Apo Nitrophorin 4 From
Rhodnius Prolixus
pdb|3C77|X Chain X, 1.08 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) Deuteroporphyrin Ix
Complexed With Ammonia At Ph 7.5
pdb|3C78|X Chain X, 0.98 A Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Containing Fe(Iii) 2,4 Dimethyl
Deuteroporphyrin Ix Complexed With Ammonia At Ph 7.5
pdb|3MVF|A Chain A, Crystal Structure Of Nitrophorin 4 From Rhodnius
Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3TGA|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus At Ph 7.4
pdb|3TGB|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Imidazole At Ph 7.4
pdb|3TGC|A Chain A, Crystal Structure Of L130r Mutant Of Nitrophorin 4 From
Rhodnius Prolixus Complexed With Nitrite At Ph 7.4
Length = 184
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SXU|A Chain A, 1.4 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Imidazole
pdb|1SXY|A Chain A, 1.07 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus
pdb|1SY3|A Chain A, 1.00 A Crystal Structure Of D30n Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3FLL|A Chain A, Crystal Structure Of E55q Mutant Of Nitrophorin 4
Length = 184
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKQALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SXW|A Chain A, 1.05 A Crystal Structure Of D30a Mutant Of Nitrophorin 4
From Rhodnius Prolixus Complexed With Nitric Oxide
Length = 184
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|1SXX|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4 Complexed With Nitric Oxide
pdb|1SY2|A Chain A, 1.0 A Crystal Structure Of D129aL130A MUTANT OF
Nitrophorin 4
Length = 184
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 195 DIPTYVVGVN--ADAYKPDEPIISNASCTTNCLAPFVKVL-DQKFVTQL 240
D+P V VN DA++ + II+N +CTT P +KVL D+ + +L
Sbjct: 120 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEARLVRL 168
>pdb|2OFR|X Chain X, 1.00 A Crystal Structure Of V36aD129AL130A MUTANT OF
Nitrophorin 4 From Rhodnius Prolixus Complexed With
Nitric Oxide At Ph 5.6
Length = 184
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 24 SGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAI 73
SG A + K+ D F+ V LQ +LG ++ ++KV +KVA+
Sbjct: 50 SGKLKEALYHYDPKTQDTFYDVSELQVESLGKYTANFKKVDKNGNVKVAV 99
>pdb|3TZ6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Inhibitor Smcs (Cys) And Phosphate From
Mycobacterium Tuberculosis H37rv
Length = 344
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 195 DIPTYVVGVN--ADAYKPDEPIISNASCTTNCLAPFVKVL 232
D+P V VN DA++ + II+N +CTT P +KVL
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVL 141
>pdb|2YV3|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
pdb|2YV3|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Thermus Thermophilus Hb8
Length = 331
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 152 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYK 209
LP G L +DLV+ G + R A + GA V ++ + + +P V VN +
Sbjct: 55 LPEGPLPVDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIF 114
Query: 210 PDEPIISNASCTTNCLAPFVKVLDQKF 236
II+N +CTT LA + L + F
Sbjct: 115 QHRGIIANPNCTTAILAMALWPLHRAF 141
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 89 GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 130
GR D+P E VA N G A D+TL I+E D P G
Sbjct: 74 GRDDAPYECVAENGVGDAVSA------DATLTIYEGDKTPAG 109
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Query: 89 GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 130
GR D+P E VA N G A D+TL I+E D P G
Sbjct: 76 GRDDAPYECVAENGVGDAVSA------DATLTIYEGDKTPAG 111
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 55 SSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHL 112
++++ K+ Q + +VAI GFG +G R +H D VVA+ D TG V + +
Sbjct: 221 TAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFH---DHGARVVAVQDHTGTVYNEAGI 277
Query: 113 LKYD 116
YD
Sbjct: 278 DPYD 281
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 55 SSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHL 112
++++ K+ Q + +VAI GFG +G R +H D VVA+ D TG V + +
Sbjct: 205 TAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFH---DHGARVVAVQDHTGTVYNEAGI 261
Query: 113 LKYD 116
YD
Sbjct: 262 DPYD 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,716,903
Number of Sequences: 62578
Number of extensions: 422676
Number of successful extensions: 1267
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 96
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)