Query 014890
Match_columns 416
No_of_seqs 192 out of 1682
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02237 glyceraldehyde-3-phos 100.0 7E-129 1E-133 993.4 34.6 384 18-415 25-412 (442)
2 PLN03096 glyceraldehyde-3-phos 100.0 2E-125 4E-130 960.9 35.2 394 6-416 1-395 (395)
3 PTZ00434 cytosolic glyceraldeh 100.0 7E-125 2E-129 944.3 29.9 336 66-415 1-355 (361)
4 PRK07403 glyceraldehyde-3-phos 100.0 4E-118 9E-123 892.5 33.0 334 68-415 1-336 (337)
5 PRK15425 gapA glyceraldehyde-3 100.0 2E-117 4E-122 886.8 33.4 330 67-413 1-331 (331)
6 PTZ00023 glyceraldehyde-3-phos 100.0 3E-117 6E-122 887.0 32.3 333 67-415 1-337 (337)
7 PRK07729 glyceraldehyde-3-phos 100.0 1E-116 3E-121 883.1 33.3 333 67-415 1-334 (343)
8 COG0057 GapA Glyceraldehyde-3- 100.0 3E-115 7E-120 862.8 32.9 333 68-415 1-334 (335)
9 PLN02272 glyceraldehyde-3-phos 100.0 3E-113 7E-118 875.7 33.7 329 69-413 86-416 (421)
10 PRK13535 erythrose 4-phosphate 100.0 7E-113 1E-117 855.6 33.0 331 69-413 2-334 (336)
11 PTZ00353 glycosomal glyceralde 100.0 8E-113 2E-117 855.7 32.4 329 67-414 1-336 (342)
12 PLN02358 glyceraldehyde-3-phos 100.0 1E-111 3E-116 847.3 33.7 330 67-413 4-337 (338)
13 PRK08955 glyceraldehyde-3-phos 100.0 6E-112 1E-116 848.4 30.2 329 67-413 1-332 (334)
14 PRK08289 glyceraldehyde-3-phos 100.0 2E-111 4E-116 867.5 32.8 333 68-415 127-472 (477)
15 TIGR01534 GAPDH-I glyceraldehy 100.0 2E-111 5E-116 842.3 30.4 323 70-406 1-327 (327)
16 TIGR01532 E4PD_g-proteo D-eryt 100.0 8E-109 2E-113 823.7 31.7 323 70-406 1-325 (325)
17 KOG0657 Glyceraldehyde 3-phosp 100.0 6.2E-85 1.3E-89 630.0 11.9 283 79-414 1-285 (285)
18 TIGR01546 GAPDH-II_archae glyc 100.0 2.7E-58 5.8E-63 461.1 22.6 235 71-347 1-243 (333)
19 PF02800 Gp_dh_C: Glyceraldehy 100.0 8E-52 1.7E-56 375.3 11.9 157 225-394 1-157 (157)
20 PF00044 Gp_dh_N: Glyceraldehy 100.0 1.3E-50 2.8E-55 365.8 11.8 149 69-220 1-151 (151)
21 PRK04207 glyceraldehyde-3-phos 100.0 7.4E-49 1.6E-53 394.0 23.0 237 68-347 1-246 (341)
22 smart00846 Gp_dh_N Glyceraldeh 100.0 1.5E-45 3.3E-50 331.7 17.1 149 69-220 1-149 (149)
23 PRK06901 aspartate-semialdehyd 100.0 1.5E-38 3.3E-43 316.5 19.7 233 68-346 3-254 (322)
24 PRK14874 aspartate-semialdehyd 100.0 1.2E-37 2.6E-42 311.6 19.5 231 69-345 2-268 (334)
25 TIGR01296 asd_B aspartate-semi 100.0 7.4E-37 1.6E-41 307.1 19.6 233 70-346 1-272 (339)
26 TIGR01745 asd_gamma aspartate- 100.0 5.8E-35 1.2E-39 295.9 17.1 235 69-346 1-298 (366)
27 COG0136 Asd Aspartate-semialde 100.0 2E-33 4.3E-38 280.7 19.1 296 68-409 1-331 (334)
28 PRK06728 aspartate-semialdehyd 100.0 2.4E-32 5.3E-37 275.5 20.4 294 68-414 5-344 (347)
29 PRK06598 aspartate-semialdehyd 100.0 3.7E-32 8.1E-37 276.0 17.6 235 69-346 2-300 (369)
30 PRK08664 aspartate-semialdehyd 100.0 5.5E-28 1.2E-32 243.2 22.4 235 67-347 2-268 (349)
31 PRK08040 putative semialdehyde 100.0 3.2E-27 7E-32 237.6 24.4 235 67-345 3-267 (336)
32 TIGR00978 asd_EA aspartate-sem 100.0 1.2E-27 2.6E-32 240.1 20.9 254 69-364 1-282 (341)
33 PLN02383 aspartate semialdehyd 99.9 1E-26 2.2E-31 234.5 20.5 235 65-345 4-276 (344)
34 PRK05671 aspartate-semialdehyd 99.9 2.6E-26 5.6E-31 231.0 22.8 235 68-346 4-269 (336)
35 PRK00436 argC N-acetyl-gamma-g 99.9 1.3E-22 2.9E-27 204.1 22.3 237 67-346 1-264 (343)
36 TIGR01850 argC N-acetyl-gamma- 99.9 4.7E-21 1E-25 193.2 17.6 234 69-346 1-267 (346)
37 PLN02968 Probable N-acetyl-gam 99.9 1.7E-20 3.7E-25 191.8 21.8 237 66-345 36-301 (381)
38 PRK11863 N-acetyl-gamma-glutam 99.8 3.2E-17 7E-22 164.0 19.2 219 67-347 1-237 (313)
39 KOG4777 Aspartate-semialdehyde 99.6 1.1E-15 2.3E-20 148.7 10.9 226 70-346 5-277 (361)
40 TIGR01851 argC_other N-acetyl- 99.6 2.6E-14 5.7E-19 142.9 18.6 218 69-346 2-237 (310)
41 PRK08300 acetaldehyde dehydrog 99.5 2.6E-13 5.6E-18 135.4 12.7 164 68-272 4-172 (302)
42 TIGR03215 ac_ald_DH_ac acetald 99.2 4.1E-11 8.9E-16 118.9 11.2 162 68-273 1-167 (285)
43 COG0002 ArgC Acetylglutamate s 98.9 4.2E-08 9.2E-13 99.6 16.0 235 67-348 1-272 (349)
44 PF01118 Semialdhyde_dh: Semia 98.8 5.8E-09 1.3E-13 90.0 3.8 111 70-208 1-118 (121)
45 PF02774 Semialdhyde_dhC: Semi 98.6 2.4E-07 5.3E-12 85.9 9.6 104 229-345 1-132 (184)
46 TIGR01921 DAP-DH diaminopimela 98.1 9.5E-05 2.1E-09 75.1 15.4 266 68-404 3-281 (324)
47 PRK13301 putative L-aspartate 98.1 9.8E-06 2.1E-10 80.2 7.6 95 67-192 1-96 (267)
48 smart00859 Semialdhyde_dh Semi 97.9 2.2E-05 4.8E-10 67.3 6.4 112 70-208 1-120 (122)
49 PRK13303 L-aspartate dehydroge 97.7 0.00012 2.6E-09 71.8 7.7 91 69-191 2-93 (265)
50 PRK06270 homoserine dehydrogen 97.5 0.00035 7.5E-09 71.0 9.0 143 67-236 1-167 (341)
51 PF01113 DapB_N: Dihydrodipico 97.4 0.00045 9.7E-09 60.3 6.4 95 69-187 1-96 (124)
52 COG1712 Predicted dinucleotide 97.3 0.00047 1E-08 67.1 7.0 94 69-192 1-94 (255)
53 TIGR00036 dapB dihydrodipicoli 97.3 0.00064 1.4E-08 66.8 7.1 95 69-188 2-97 (266)
54 PRK13304 L-aspartate dehydroge 97.2 0.001 2.2E-08 65.2 8.0 92 69-191 2-93 (265)
55 PRK13302 putative L-aspartate 97.2 0.0014 3E-08 64.7 8.4 91 68-188 6-96 (271)
56 PRK06349 homoserine dehydrogen 97.2 0.0006 1.3E-08 71.3 5.9 95 68-191 3-105 (426)
57 PRK11579 putative oxidoreducta 97.0 0.003 6.5E-08 63.5 8.8 93 68-192 4-97 (346)
58 PRK00048 dihydrodipicolinate r 97.0 0.0014 3E-08 64.0 5.9 88 68-188 1-89 (257)
59 PRK08374 homoserine dehydrogen 96.9 0.0012 2.5E-08 67.2 5.2 166 67-255 1-179 (336)
60 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0019 4.1E-08 54.3 5.3 95 69-192 1-95 (120)
61 PRK06392 homoserine dehydrogen 96.7 0.0045 9.7E-08 63.0 7.7 155 69-255 1-173 (326)
62 PRK06813 homoserine dehydrogen 96.7 0.0027 5.9E-08 65.1 6.0 163 67-255 1-179 (346)
63 COG0460 ThrA Homoserine dehydr 96.6 0.005 1.1E-07 63.0 7.0 157 66-255 1-170 (333)
64 COG0289 DapB Dihydrodipicolina 96.5 0.013 2.9E-07 58.2 9.2 140 67-236 1-144 (266)
65 KOG4354 N-acetyl-gamma-glutamy 96.4 0.022 4.8E-07 56.5 9.5 285 61-397 12-309 (340)
66 cd01076 NAD_bind_1_Glu_DH NAD( 96.3 0.051 1.1E-06 52.5 11.6 35 66-103 29-63 (227)
67 PRK09414 glutamate dehydrogena 96.2 0.025 5.3E-07 60.1 9.4 99 67-188 231-341 (445)
68 cd05211 NAD_bind_Glu_Leu_Phe_V 96.1 0.061 1.3E-06 51.7 10.9 34 67-103 22-55 (217)
69 PRK10206 putative oxidoreducta 95.9 0.02 4.4E-07 58.0 7.2 96 68-192 1-97 (344)
70 PF03447 NAD_binding_3: Homose 95.9 0.0034 7.4E-08 53.5 1.2 87 75-190 1-89 (117)
71 PRK05447 1-deoxy-D-xylulose 5- 95.8 0.029 6.3E-07 58.5 8.0 111 69-188 2-120 (385)
72 PLN02775 Probable dihydrodipic 95.5 0.045 9.8E-07 55.0 7.9 140 66-236 9-154 (286)
73 COG0673 MviM Predicted dehydro 95.4 0.05 1.1E-06 53.6 7.8 98 67-192 2-100 (342)
74 PLN02696 1-deoxy-D-xylulose-5- 95.0 0.17 3.6E-06 54.0 10.5 110 68-189 57-179 (454)
75 TIGR03736 PRTRC_ThiF PRTRC sys 95.0 0.052 1.1E-06 53.4 6.1 165 67-236 10-219 (244)
76 cd05313 NAD_bind_2_Glu_DH NAD( 94.9 0.11 2.4E-06 51.5 8.3 104 67-188 37-151 (254)
77 PF02826 2-Hacid_dh_C: D-isome 94.7 0.042 9.2E-07 50.5 4.7 35 68-105 36-70 (178)
78 PLN02700 homoserine dehydrogen 94.7 0.081 1.8E-06 55.1 7.1 88 159-255 110-197 (377)
79 PLN02477 glutamate dehydrogena 94.5 0.32 6.8E-06 51.3 11.1 33 68-103 206-238 (410)
80 COG0569 TrkA K+ transport syst 94.3 0.086 1.9E-06 50.7 5.9 99 69-193 1-103 (225)
81 COG4569 MhpF Acetaldehyde dehy 94.0 0.18 4E-06 49.0 7.4 135 68-234 4-144 (310)
82 TIGR02130 dapB_plant dihydrodi 94.0 0.12 2.5E-06 51.9 6.2 94 69-189 1-100 (275)
83 COG4091 Predicted homoserine d 93.7 0.14 3E-06 53.2 6.2 92 67-169 16-112 (438)
84 PRK05472 redox-sensing transcr 93.7 0.15 3.2E-06 48.4 6.1 97 68-192 84-180 (213)
85 PTZ00079 NADP-specific glutama 93.6 0.32 6.9E-06 51.9 9.1 101 68-185 237-348 (454)
86 PLN00016 RNA-binding protein; 93.3 0.23 5E-06 50.4 7.3 40 60-102 44-88 (378)
87 CHL00194 ycf39 Ycf39; Provisio 93.0 0.41 8.8E-06 47.3 8.3 31 69-102 1-32 (317)
88 PRK08410 2-hydroxyacid dehydro 92.9 0.12 2.6E-06 52.1 4.3 32 68-102 145-176 (311)
89 PRK09436 thrA bifunctional asp 92.9 0.069 1.5E-06 60.6 2.9 165 67-255 464-639 (819)
90 cd01075 NAD_bind_Leu_Phe_Val_D 92.7 0.49 1.1E-05 44.7 7.9 32 68-103 28-59 (200)
91 PF05368 NmrA: NmrA-like famil 92.5 0.12 2.5E-06 48.5 3.5 96 71-191 1-103 (233)
92 PRK06487 glycerate dehydrogena 92.4 0.15 3.2E-06 51.5 4.3 32 68-102 148-179 (317)
93 PRK09466 metL bifunctional asp 92.4 0.085 1.8E-06 59.9 2.8 37 66-102 456-499 (810)
94 PRK08229 2-dehydropantoate 2-r 92.4 0.89 1.9E-05 45.4 9.7 33 67-102 1-33 (341)
95 PRK07634 pyrroline-5-carboxyla 92.1 0.4 8.8E-06 45.5 6.7 36 68-103 4-40 (245)
96 COG2344 AT-rich DNA-binding pr 92.0 0.31 6.7E-06 46.8 5.6 102 68-197 84-185 (211)
97 PRK06932 glycerate dehydrogena 92.0 0.18 3.9E-06 50.9 4.3 31 68-101 147-177 (314)
98 COG2910 Putative NADH-flavin r 91.8 0.62 1.3E-05 44.8 7.3 31 69-102 1-32 (211)
99 PF13380 CoA_binding_2: CoA bi 91.7 0.68 1.5E-05 40.1 7.0 83 70-191 2-88 (116)
100 TIGR02853 spore_dpaA dipicolin 91.7 0.21 4.6E-06 49.8 4.4 31 69-102 152-182 (287)
101 PRK08306 dipicolinate synthase 91.6 0.28 6E-06 49.1 5.1 32 68-102 152-183 (296)
102 COG1052 LdhA Lactate dehydroge 91.5 0.29 6.3E-06 50.0 5.2 33 68-103 146-178 (324)
103 PF03807 F420_oxidored: NADP o 91.4 0.48 1E-05 38.4 5.4 43 70-113 1-43 (96)
104 PRK05476 S-adenosyl-L-homocyst 91.4 0.43 9.4E-06 50.5 6.5 31 68-101 212-242 (425)
105 PLN02928 oxidoreductase family 91.2 0.25 5.3E-06 50.7 4.4 33 68-103 159-191 (347)
106 PRK14031 glutamate dehydrogena 91.2 0.87 1.9E-05 48.6 8.5 103 67-189 227-341 (444)
107 PF13460 NAD_binding_10: NADH( 91.1 0.13 2.8E-06 45.9 2.0 29 71-102 1-30 (183)
108 COG0111 SerA Phosphoglycerate 90.8 0.28 6.1E-06 50.0 4.4 32 68-102 142-173 (324)
109 PRK07574 formate dehydrogenase 90.8 0.28 6.1E-06 51.2 4.4 32 68-102 192-223 (385)
110 PRK15409 bifunctional glyoxyla 90.7 0.29 6.3E-06 49.7 4.3 31 68-101 145-176 (323)
111 PRK11790 D-3-phosphoglycerate 90.6 0.3 6.5E-06 51.2 4.5 32 68-102 151-182 (409)
112 PRK06436 glycerate dehydrogena 90.6 0.31 6.8E-06 49.1 4.4 32 68-102 122-153 (303)
113 cd08230 glucose_DH Glucose deh 90.6 2.2 4.9E-05 42.5 10.5 139 69-234 174-315 (355)
114 PRK13243 glyoxylate reductase; 90.4 0.33 7.1E-06 49.4 4.4 32 68-102 150-181 (333)
115 PLN02494 adenosylhomocysteinas 90.3 0.77 1.7E-05 49.4 7.2 32 68-102 254-285 (477)
116 PF03446 NAD_binding_2: NAD bi 90.0 0.47 1E-05 42.8 4.7 30 69-101 2-31 (163)
117 KOG2741 Dimeric dihydrodiol de 90.0 1.1 2.3E-05 46.5 7.6 101 66-191 4-104 (351)
118 PTZ00117 malate dehydrogenase; 90.0 1.6 3.4E-05 44.2 8.8 24 68-91 5-28 (319)
119 PF10727 Rossmann-like: Rossma 89.9 0.27 5.8E-06 43.7 2.9 32 68-102 10-41 (127)
120 cd00401 AdoHcyase S-adenosyl-L 89.8 0.63 1.4E-05 49.1 6.1 30 68-100 202-231 (413)
121 PRK14030 glutamate dehydrogena 89.8 1.5 3.3E-05 46.8 8.9 103 67-185 227-339 (445)
122 PRK15469 ghrA bifunctional gly 89.6 0.44 9.6E-06 48.2 4.6 32 68-102 136-167 (312)
123 PRK00045 hemA glutamyl-tRNA re 89.5 1.2 2.6E-05 46.6 7.9 31 69-102 183-214 (423)
124 PRK11199 tyrA bifunctional cho 89.4 1.2 2.5E-05 46.1 7.5 32 67-101 97-129 (374)
125 TIGR01202 bchC 2-desacetyl-2-h 89.3 3.4 7.4E-05 40.7 10.5 125 69-234 146-271 (308)
126 PLN02306 hydroxypyruvate reduc 89.1 0.47 1E-05 49.5 4.4 32 68-102 165-197 (386)
127 PRK11880 pyrroline-5-carboxyla 89.1 0.54 1.2E-05 45.4 4.6 35 67-101 1-35 (267)
128 cd01483 E1_enzyme_family Super 89.0 0.57 1.2E-05 41.1 4.4 102 70-175 1-106 (143)
129 PRK12480 D-lactate dehydrogena 88.9 0.53 1.1E-05 48.0 4.6 32 68-102 146-177 (330)
130 PRK15438 erythronate-4-phospha 88.8 0.5 1.1E-05 49.3 4.4 31 68-101 116-146 (378)
131 TIGR01761 thiaz-red thiazoliny 88.8 1.6 3.5E-05 44.9 8.0 94 68-191 3-98 (343)
132 PLN03139 formate dehydrogenase 88.7 0.49 1.1E-05 49.4 4.2 32 68-102 199-230 (386)
133 PRK07819 3-hydroxybutyryl-CoA 88.6 0.99 2.1E-05 44.8 6.1 147 70-236 7-178 (286)
134 PF03435 Saccharop_dh: Sacchar 88.5 0.55 1.2E-05 47.9 4.4 96 71-190 1-97 (386)
135 PLN02819 lysine-ketoglutarate 88.4 1.4 3E-05 51.7 7.9 99 68-191 569-679 (1042)
136 TIGR00936 ahcY adenosylhomocys 88.3 0.94 2E-05 47.8 6.0 31 68-101 195-225 (406)
137 PRK11559 garR tartronate semia 88.3 0.61 1.3E-05 45.7 4.4 32 67-101 1-32 (296)
138 TIGR03649 ergot_EASG ergot alk 88.1 1.3 2.8E-05 42.6 6.5 30 70-102 1-31 (285)
139 PRK06223 malate dehydrogenase; 87.8 2.6 5.6E-05 41.8 8.5 31 69-101 3-33 (307)
140 COG0287 TyrA Prephenate dehydr 87.7 0.89 1.9E-05 45.5 5.2 25 67-91 2-26 (279)
141 TIGR01327 PGDH D-3-phosphoglyc 86.2 0.86 1.9E-05 49.2 4.4 32 68-102 138-169 (525)
142 PF00056 Ldh_1_N: lactate/mala 86.1 2.1 4.5E-05 38.2 6.2 80 69-170 1-81 (141)
143 TIGR01035 hemA glutamyl-tRNA r 86.0 1.5 3.3E-05 46.0 6.0 32 69-102 181-212 (417)
144 COG1748 LYS9 Saccharopine dehy 85.9 2.1 4.5E-05 45.1 6.9 98 69-191 2-99 (389)
145 PRK00257 erythronate-4-phospha 85.8 0.96 2.1E-05 47.2 4.4 31 68-101 116-146 (381)
146 PLN02712 arogenate dehydrogena 85.7 1.1 2.4E-05 50.0 5.1 35 66-103 367-401 (667)
147 PF02629 CoA_binding: CoA bind 85.7 0.6 1.3E-05 38.8 2.3 92 68-191 3-95 (96)
148 PTZ00082 L-lactate dehydrogena 85.7 1.5 3.2E-05 44.5 5.6 23 69-91 7-29 (321)
149 cd05213 NAD_bind_Glutamyl_tRNA 85.6 3.5 7.6E-05 41.4 8.2 33 68-102 178-210 (311)
150 COG1063 Tdh Threonine dehydrog 85.3 1.9 4E-05 44.0 6.2 101 70-192 171-272 (350)
151 PRK13581 D-3-phosphoglycerate 85.3 0.99 2.1E-05 48.8 4.4 32 68-102 140-171 (526)
152 PRK08818 prephenate dehydrogen 85.3 1.5 3.3E-05 45.6 5.6 31 68-100 4-35 (370)
153 PRK08605 D-lactate dehydrogena 85.2 1.1 2.3E-05 45.6 4.3 33 68-102 146-178 (332)
154 PF02670 DXP_reductoisom: 1-de 84.9 2.2 4.7E-05 38.3 5.6 110 71-189 1-120 (129)
155 TIGR03366 HpnZ_proposed putati 84.7 4.9 0.00011 38.9 8.5 137 69-234 122-260 (280)
156 PRK07417 arogenate dehydrogena 84.7 1.2 2.6E-05 43.7 4.4 31 69-102 1-31 (279)
157 PLN02256 arogenate dehydrogena 84.7 1.4 3E-05 44.4 4.9 34 67-103 35-68 (304)
158 PRK13403 ketol-acid reductoiso 84.6 1.2 2.7E-05 45.9 4.4 32 69-103 17-48 (335)
159 PRK09880 L-idonate 5-dehydroge 84.3 5 0.00011 39.9 8.6 90 69-184 171-261 (343)
160 PLN00106 malate dehydrogenase 84.2 5.1 0.00011 41.0 8.7 138 69-236 19-179 (323)
161 PF01488 Shikimate_DH: Shikima 83.9 1.7 3.7E-05 38.3 4.5 94 69-190 13-108 (135)
162 TIGR00518 alaDH alanine dehydr 83.6 1.6 3.6E-05 45.0 5.0 32 68-102 167-198 (370)
163 PRK00066 ldh L-lactate dehydro 83.0 2.5 5.4E-05 42.8 5.9 24 68-91 6-29 (315)
164 COG1064 AdhP Zn-dependent alco 83.0 7.1 0.00015 40.4 9.2 94 69-192 168-262 (339)
165 PLN02712 arogenate dehydrogena 82.7 1.6 3.4E-05 48.8 4.7 33 68-103 52-84 (667)
166 PF12338 RbcS: Ribulose-1,5-bi 82.0 0.75 1.6E-05 34.3 1.2 22 18-39 22-43 (45)
167 PRK12475 thiamine/molybdopteri 81.7 1.5 3.2E-05 44.9 3.8 127 68-203 24-163 (338)
168 PLN02662 cinnamyl-alcohol dehy 81.5 6.2 0.00013 38.3 7.9 30 69-101 5-35 (322)
169 PLN02688 pyrroline-5-carboxyla 81.5 3 6.5E-05 40.2 5.6 35 69-103 1-36 (266)
170 PRK01438 murD UDP-N-acetylmura 81.5 8.9 0.00019 40.3 9.6 91 69-189 17-107 (480)
171 PRK06545 prephenate dehydrogen 81.0 4.9 0.00011 41.1 7.3 31 70-101 2-32 (359)
172 cd00755 YgdL_like Family of ac 80.8 2.9 6.2E-05 40.7 5.2 150 68-236 11-166 (231)
173 PLN03209 translocon at the inn 80.8 9 0.00019 42.4 9.5 31 68-101 80-111 (576)
174 cd08239 THR_DH_like L-threonin 80.5 6.1 0.00013 38.9 7.5 137 69-234 165-302 (339)
175 KOG0069 Glyoxylate/hydroxypyru 80.4 1.5 3.3E-05 45.2 3.3 31 60-90 154-184 (336)
176 PLN02214 cinnamoyl-CoA reducta 80.3 7.1 0.00015 39.2 8.0 32 68-102 10-42 (342)
177 cd08298 CAD2 Cinnamyl alcohol 79.8 19 0.0004 35.1 10.6 85 69-186 169-253 (329)
178 COG0451 WcaG Nucleoside-diphos 79.5 7.9 0.00017 37.0 7.8 30 70-102 2-32 (314)
179 PRK09599 6-phosphogluconate de 78.9 2.7 5.8E-05 41.8 4.4 31 69-102 1-31 (301)
180 PRK08268 3-hydroxy-acyl-CoA de 78.7 2.5 5.4E-05 45.6 4.4 31 69-102 8-38 (507)
181 PF00670 AdoHcyase_NAD: S-aden 78.4 10 0.00022 35.4 7.7 89 68-194 23-113 (162)
182 PRK06718 precorrin-2 dehydroge 78.1 23 0.00051 33.5 10.3 31 69-102 11-41 (202)
183 COG0771 MurD UDP-N-acetylmuram 78.1 9.8 0.00021 40.8 8.5 87 68-184 7-95 (448)
184 PRK12490 6-phosphogluconate de 78.0 3 6.5E-05 41.4 4.5 31 69-102 1-31 (299)
185 PRK03369 murD UDP-N-acetylmura 77.9 9.2 0.0002 40.8 8.4 83 69-183 13-95 (488)
186 PTZ00075 Adenosylhomocysteinas 77.6 3 6.6E-05 44.9 4.6 31 68-101 254-284 (476)
187 PF02254 TrkA_N: TrkA-N domain 77.5 3.8 8.2E-05 34.1 4.3 29 71-102 1-29 (116)
188 TIGR00872 gnd_rel 6-phosphoglu 77.4 3.1 6.7E-05 41.4 4.4 31 69-102 1-31 (298)
189 KOG0068 D-3-phosphoglycerate d 77.3 3 6.5E-05 43.5 4.3 32 69-103 147-178 (406)
190 PRK08507 prephenate dehydrogen 77.1 3.5 7.7E-05 40.2 4.6 33 69-102 1-33 (275)
191 COG0039 Mdh Malate/lactate deh 76.8 6.1 0.00013 40.4 6.4 137 69-236 1-159 (313)
192 COG0334 GdhA Glutamate dehydro 76.6 15 0.00033 39.0 9.3 33 68-103 207-239 (411)
193 TIGR01019 sucCoAalpha succinyl 76.6 7.2 0.00016 39.3 6.8 86 69-188 7-93 (286)
194 PLN02586 probable cinnamyl alc 76.6 9.8 0.00021 38.4 7.8 31 69-102 185-215 (360)
195 PRK07502 cyclohexadienyl dehyd 76.3 3.8 8.3E-05 40.6 4.7 33 68-101 6-38 (307)
196 TIGR01505 tartro_sem_red 2-hyd 76.2 3.1 6.7E-05 40.8 4.0 30 70-102 1-30 (291)
197 PRK14619 NAD(P)H-dependent gly 75.8 4 8.7E-05 40.6 4.7 31 69-102 5-35 (308)
198 cd01487 E1_ThiF_like E1_ThiF_l 75.4 2.4 5.2E-05 39.1 2.8 22 70-91 1-22 (174)
199 PLN02260 probable rhamnose bio 75.4 9.7 0.00021 41.9 7.9 34 68-102 6-40 (668)
200 PRK12464 1-deoxy-D-xylulose 5- 75.4 4.7 0.0001 42.4 5.2 107 73-189 1-116 (383)
201 PRK06476 pyrroline-5-carboxyla 75.3 4 8.6E-05 39.4 4.4 23 69-91 1-23 (258)
202 cd05293 LDH_1 A subgroup of L- 75.2 7.1 0.00015 39.5 6.3 32 69-101 4-35 (312)
203 cd08242 MDR_like Medium chain 75.2 18 0.0004 35.0 9.0 84 69-184 157-240 (319)
204 PRK09496 trkA potassium transp 75.0 3.7 8.1E-05 42.4 4.4 31 69-102 1-31 (453)
205 PRK03659 glutathione-regulated 74.7 4.6 9.9E-05 44.4 5.2 40 68-112 400-439 (601)
206 PF00208 ELFV_dehydrog: Glutam 74.7 4.3 9.3E-05 39.8 4.5 102 68-188 32-144 (244)
207 PLN00203 glutamyl-tRNA reducta 74.4 8.7 0.00019 41.9 7.1 33 69-103 267-299 (519)
208 PRK00683 murD UDP-N-acetylmura 74.2 13 0.00028 38.6 8.1 86 69-190 4-89 (418)
209 cd05291 HicDH_like L-2-hydroxy 74.1 5.5 0.00012 39.8 5.2 32 70-102 2-33 (306)
210 cd00757 ThiF_MoeB_HesA_family 73.7 2.2 4.7E-05 40.9 2.1 103 68-176 21-129 (228)
211 PRK12491 pyrroline-5-carboxyla 73.3 5.2 0.00011 39.6 4.7 45 67-113 1-46 (272)
212 PRK00094 gpsA NAD(P)H-dependen 73.2 5 0.00011 39.4 4.6 31 69-102 2-32 (325)
213 PRK03562 glutathione-regulated 72.9 5.4 0.00012 44.1 5.2 38 68-110 400-437 (621)
214 PRK08644 thiamine biosynthesis 72.4 2.3 4.9E-05 40.7 1.9 24 68-91 28-51 (212)
215 KOG1502 Flavonol reductase/cin 72.3 16 0.00034 37.8 8.0 81 67-169 5-89 (327)
216 PRK07679 pyrroline-5-carboxyla 71.9 5.8 0.00013 38.9 4.7 34 69-102 4-38 (279)
217 PRK15116 sulfur acceptor prote 71.9 2.9 6.4E-05 41.7 2.6 24 68-91 30-53 (268)
218 TIGR00243 Dxr 1-deoxy-D-xylulo 71.8 7.1 0.00015 41.1 5.5 111 69-189 2-123 (389)
219 PF00899 ThiF: ThiF family; I 71.2 0.67 1.4E-05 40.4 -1.9 106 69-179 3-113 (135)
220 cd01484 E1-2_like Ubiquitin ac 71.2 4.5 9.8E-05 39.5 3.7 128 70-203 1-138 (234)
221 TIGR02717 AcCoA-syn-alpha acet 71.0 12 0.00025 39.8 7.0 84 68-188 7-94 (447)
222 PLN02602 lactate dehydrogenase 70.9 9 0.0002 39.6 6.0 139 69-236 38-195 (350)
223 COG3804 Uncharacterized conser 70.7 6 0.00013 40.4 4.5 35 67-103 1-35 (350)
224 COG2085 Predicted dinucleotide 70.6 7.7 0.00017 37.7 5.0 93 69-192 2-94 (211)
225 PF02737 3HCDH_N: 3-hydroxyacy 70.6 6.6 0.00014 36.4 4.5 30 70-102 1-30 (180)
226 TIGR02356 adenyl_thiF thiazole 70.4 6.9 0.00015 36.9 4.7 106 68-177 21-130 (202)
227 PF03721 UDPG_MGDP_dh_N: UDP-g 70.3 6.1 0.00013 37.0 4.2 30 69-101 1-30 (185)
228 cd08281 liver_ADH_like1 Zinc-d 70.2 9.3 0.0002 38.5 5.9 96 69-188 193-289 (371)
229 TIGR03201 dearomat_had 6-hydro 70.1 22 0.00047 35.5 8.4 139 69-234 168-312 (349)
230 cd01338 MDH_choloroplast_like 70.0 8.1 0.00018 39.3 5.4 23 68-90 2-25 (322)
231 cd01486 Apg7 Apg7 is an E1-lik 70.0 2.3 4.9E-05 43.5 1.4 118 70-190 1-139 (307)
232 PRK10669 putative cation:proto 69.7 7.1 0.00015 42.2 5.2 34 66-102 415-448 (558)
233 PRK15059 tartronate semialdehy 69.7 6.1 0.00013 39.4 4.4 29 70-101 2-30 (292)
234 cd05290 LDH_3 A subgroup of L- 68.9 11 0.00024 38.1 6.0 22 70-91 1-22 (307)
235 PRK09424 pntA NAD(P) transhydr 68.8 29 0.00063 37.8 9.5 31 68-101 165-195 (509)
236 PRK05479 ketol-acid reductoiso 68.7 6.3 0.00014 40.6 4.3 31 69-102 18-48 (330)
237 PRK05690 molybdopterin biosynt 68.4 3.4 7.5E-05 40.2 2.2 101 68-175 32-139 (245)
238 PRK06928 pyrroline-5-carboxyla 68.3 7.8 0.00017 38.1 4.7 34 69-102 2-36 (277)
239 TIGR01915 npdG NADPH-dependent 67.9 8.1 0.00018 36.5 4.6 30 69-101 1-31 (219)
240 TIGR03026 NDP-sugDHase nucleot 67.8 6.5 0.00014 40.8 4.3 31 69-102 1-31 (411)
241 PRK14618 NAD(P)H-dependent gly 67.5 7.6 0.00016 38.9 4.5 31 69-102 5-35 (328)
242 PLN02545 3-hydroxybutyryl-CoA 67.0 8 0.00017 38.1 4.5 31 69-102 5-35 (295)
243 cd05294 LDH-like_MDH_nadp A la 66.9 11 0.00024 38.0 5.5 32 69-101 1-33 (309)
244 PRK07201 short chain dehydroge 66.8 38 0.00083 36.7 10.0 34 69-103 1-35 (657)
245 PF04321 RmlD_sub_bind: RmlD s 66.8 11 0.00024 37.1 5.4 30 69-101 1-31 (286)
246 PRK15461 NADH-dependent gamma- 66.5 7.6 0.00017 38.5 4.3 31 69-102 2-32 (296)
247 TIGR01087 murD UDP-N-acetylmur 66.4 28 0.0006 36.1 8.5 84 70-183 1-87 (433)
248 COG0743 Dxr 1-deoxy-D-xylulose 66.3 11 0.00023 39.6 5.4 44 69-113 2-46 (385)
249 PLN02740 Alcohol dehydrogenase 66.1 14 0.0003 37.5 6.2 30 69-101 200-230 (381)
250 PLN02178 cinnamyl-alcohol dehy 65.9 21 0.00046 36.5 7.5 30 69-101 180-209 (375)
251 TIGR02354 thiF_fam2 thiamine b 65.7 2.6 5.7E-05 39.9 0.8 24 68-91 21-44 (200)
252 PRK11064 wecC UDP-N-acetyl-D-m 65.3 8.5 0.00018 40.4 4.6 31 69-102 4-34 (415)
253 PRK08618 ornithine cyclodeamin 65.0 15 0.00032 37.2 6.0 33 69-103 128-160 (325)
254 PRK05865 hypothetical protein; 64.9 19 0.00042 41.6 7.6 31 69-102 1-32 (854)
255 TIGR03451 mycoS_dep_FDH mycoth 64.7 31 0.00068 34.5 8.3 30 69-101 178-208 (358)
256 PRK07688 thiamine/molybdopteri 64.5 14 0.00031 37.9 5.9 110 68-185 24-144 (339)
257 TIGR00465 ilvC ketol-acid redu 64.4 8.9 0.00019 39.0 4.4 32 69-103 4-35 (314)
258 cd08296 CAD_like Cinnamyl alco 64.3 21 0.00046 35.1 7.0 93 70-188 166-258 (333)
259 PLN02514 cinnamyl-alcohol dehy 64.2 28 0.00061 35.0 7.9 93 69-188 182-274 (357)
260 PRK06249 2-dehydropantoate 2-r 64.2 10 0.00022 37.8 4.7 32 68-100 5-36 (313)
261 KOG1203 Predicted dehydrogenas 64.1 12 0.00025 39.9 5.2 30 68-100 79-109 (411)
262 PTZ00325 malate dehydrogenase; 63.9 49 0.0011 33.9 9.6 139 69-236 9-169 (321)
263 PRK07877 hypothetical protein; 63.7 3.8 8.1E-05 46.4 1.7 111 68-183 107-222 (722)
264 PRK06129 3-hydroxyacyl-CoA deh 63.6 9.5 0.00021 38.0 4.3 31 69-102 3-33 (308)
265 PRK07680 late competence prote 63.3 9.7 0.00021 37.1 4.3 23 69-91 1-23 (273)
266 cd08284 FDH_like_2 Glutathione 62.7 9.2 0.0002 37.4 4.0 91 69-183 169-260 (344)
267 PRK00421 murC UDP-N-acetylmura 62.6 34 0.00073 36.0 8.4 83 69-183 8-91 (461)
268 TIGR02355 moeB molybdopterin s 62.5 5.2 0.00011 38.9 2.2 102 68-176 24-132 (240)
269 PRK06035 3-hydroxyacyl-CoA deh 62.4 11 0.00024 37.1 4.5 31 69-102 4-34 (291)
270 PRK09260 3-hydroxybutyryl-CoA 62.4 10 0.00022 37.2 4.3 29 70-101 3-31 (288)
271 PRK02006 murD UDP-N-acetylmura 61.9 38 0.00082 36.0 8.7 30 69-102 8-37 (498)
272 PRK00141 murD UDP-N-acetylmura 61.9 45 0.00097 35.5 9.2 83 69-183 16-99 (473)
273 PLN02657 3,8-divinyl protochlo 61.9 14 0.0003 38.2 5.3 32 68-102 60-92 (390)
274 PRK02472 murD UDP-N-acetylmura 61.7 34 0.00074 35.5 8.2 85 69-183 6-93 (447)
275 PRK06522 2-dehydropantoate 2-r 61.5 12 0.00026 36.4 4.5 30 69-101 1-30 (304)
276 PLN02778 3,5-epimerase/4-reduc 61.5 16 0.00035 36.1 5.5 32 65-99 6-38 (298)
277 cd08235 iditol_2_DH_like L-idi 61.5 55 0.0012 32.0 9.2 94 69-186 167-262 (343)
278 PRK03806 murD UDP-N-acetylmura 61.1 53 0.0011 34.1 9.5 87 69-189 7-94 (438)
279 PRK07531 bifunctional 3-hydrox 61.0 12 0.00025 40.2 4.7 32 68-102 4-35 (495)
280 cd08301 alcohol_DH_plants Plan 60.7 19 0.00042 36.1 6.0 30 69-101 189-219 (369)
281 PRK06444 prephenate dehydrogen 60.6 10 0.00022 36.1 3.8 23 69-91 1-24 (197)
282 cd05283 CAD1 Cinnamyl alcohol 60.5 55 0.0012 32.2 9.1 87 69-183 171-257 (337)
283 PF01262 AlaDh_PNT_C: Alanine 60.5 16 0.00034 33.3 4.8 33 68-103 20-52 (168)
284 PRK05808 3-hydroxybutyryl-CoA 60.1 12 0.00026 36.6 4.3 30 69-101 4-33 (282)
285 PRK14106 murD UDP-N-acetylmura 60.1 42 0.00092 34.8 8.6 88 69-183 6-93 (450)
286 cd08255 2-desacetyl-2-hydroxye 60.0 50 0.0011 31.2 8.4 85 69-183 99-184 (277)
287 COG0345 ProC Pyrroline-5-carbo 59.9 13 0.00028 37.2 4.5 43 69-113 2-45 (266)
288 COG0702 Predicted nucleoside-d 59.8 12 0.00027 35.0 4.2 31 69-102 1-32 (275)
289 PRK14573 bifunctional D-alanyl 59.4 37 0.0008 38.6 8.6 82 70-183 6-88 (809)
290 PLN02427 UDP-apiose/xylose syn 59.3 15 0.00033 37.2 5.0 34 67-102 13-47 (386)
291 PRK06130 3-hydroxybutyryl-CoA 59.2 14 0.00029 36.6 4.6 30 69-101 5-34 (311)
292 PRK08655 prephenate dehydrogen 59.2 13 0.00028 39.4 4.6 30 69-101 1-31 (437)
293 PRK10309 galactitol-1-phosphat 58.9 52 0.0011 32.5 8.6 30 69-101 162-192 (347)
294 cd08294 leukotriene_B4_DH_like 58.8 44 0.00095 32.3 8.0 91 69-184 145-236 (329)
295 PRK06988 putative formyltransf 58.8 13 0.00027 37.7 4.3 31 67-100 1-31 (312)
296 PRK03803 murD UDP-N-acetylmura 58.7 56 0.0012 34.1 9.2 84 70-183 8-93 (448)
297 PRK05597 molybdopterin biosynt 58.5 6.7 0.00014 40.4 2.3 110 68-184 28-145 (355)
298 cd08231 MDR_TM0436_like Hypoth 58.3 46 0.001 33.0 8.2 30 69-101 179-209 (361)
299 cd08258 Zn_ADH4 Alcohol dehydr 58.1 90 0.0019 30.5 10.1 138 70-234 167-305 (306)
300 PRK06153 hypothetical protein; 58.1 6.2 0.00013 41.7 2.0 106 68-177 176-285 (393)
301 PTZ00431 pyrroline carboxylate 58.1 9.4 0.0002 37.2 3.2 23 69-91 4-26 (260)
302 PRK11154 fadJ multifunctional 58.0 38 0.00083 38.1 8.3 146 69-233 310-479 (708)
303 cd05188 MDR Medium chain reduc 57.8 55 0.0012 30.1 8.1 30 69-101 136-165 (271)
304 TIGR02818 adh_III_F_hyde S-(hy 57.6 43 0.00093 33.8 7.9 30 69-101 187-217 (368)
305 PTZ00142 6-phosphogluconate de 57.6 12 0.00026 40.2 4.1 153 69-234 2-186 (470)
306 PRK09496 trkA potassium transp 57.6 14 0.0003 38.2 4.5 32 68-102 231-262 (453)
307 TIGR01759 MalateDH-SF1 malate 57.4 18 0.00038 37.0 5.1 24 68-91 3-27 (323)
308 cd08237 ribitol-5-phosphate_DH 57.1 34 0.00074 34.1 7.1 31 69-101 165-196 (341)
309 cd08269 Zn_ADH9 Alcohol dehydr 57.0 23 0.0005 33.8 5.6 92 69-183 131-223 (312)
310 PLN02260 probable rhamnose bio 56.8 17 0.00037 40.0 5.2 44 66-112 378-423 (668)
311 cd08254 hydroxyacyl_CoA_DH 6-h 56.6 82 0.0018 30.4 9.4 96 69-188 167-262 (338)
312 cd08277 liver_alcohol_DH_like 56.5 51 0.0011 33.1 8.2 30 69-101 186-216 (365)
313 PRK04308 murD UDP-N-acetylmura 56.4 69 0.0015 33.4 9.4 87 69-183 6-92 (445)
314 TIGR02441 fa_ox_alpha_mit fatt 56.2 12 0.00025 42.5 3.8 144 69-232 336-503 (737)
315 PRK05708 2-dehydropantoate 2-r 56.0 15 0.00032 36.7 4.2 24 67-90 1-24 (305)
316 PRK04690 murD UDP-N-acetylmura 55.9 70 0.0015 34.0 9.5 83 69-183 9-94 (468)
317 cd08262 Zn_ADH8 Alcohol dehydr 55.9 76 0.0016 31.0 9.1 31 69-102 163-193 (341)
318 PRK10083 putative oxidoreducta 55.8 40 0.00087 32.9 7.2 21 69-89 162-182 (339)
319 TIGR01763 MalateDH_bact malate 55.3 37 0.0008 34.2 6.9 140 69-236 2-159 (305)
320 PRK05600 thiamine biosynthesis 54.9 6.9 0.00015 40.7 1.7 111 68-184 41-158 (370)
321 PLN00141 Tic62-NAD(P)-related 54.9 23 0.00049 33.6 5.1 30 69-101 18-48 (251)
322 PRK11730 fadB multifunctional 54.9 18 0.00039 40.7 5.1 30 69-101 314-343 (715)
323 PRK11908 NAD-dependent epimera 54.9 18 0.00039 35.9 4.6 32 69-102 2-34 (347)
324 cd08245 CAD Cinnamyl alcohol d 54.7 57 0.0012 31.7 8.0 31 69-102 164-194 (330)
325 PRK07530 3-hydroxybutyryl-CoA 54.7 18 0.00039 35.6 4.5 30 69-101 5-34 (292)
326 PRK05678 succinyl-CoA syntheta 54.1 41 0.00088 34.0 7.0 87 68-188 8-95 (291)
327 TIGR02437 FadB fatty oxidation 54.0 14 0.00031 41.6 4.1 145 69-233 314-482 (714)
328 cd08236 sugar_DH NAD(P)-depend 53.9 73 0.0016 31.2 8.7 92 69-184 161-253 (343)
329 PLN02986 cinnamyl-alcohol dehy 53.7 38 0.00082 33.1 6.6 42 69-113 6-49 (322)
330 PLN02289 ribulose-bisphosphate 53.4 7.6 0.00017 36.6 1.6 42 1-42 1-43 (176)
331 TIGR01757 Malate-DH_plant mala 53.1 22 0.00049 37.4 5.1 24 68-91 44-68 (387)
332 PRK05442 malate dehydrogenase; 53.0 19 0.00042 36.7 4.6 144 68-236 4-171 (326)
333 PLN00112 malate dehydrogenase 52.9 30 0.00065 37.1 6.1 23 68-90 100-123 (444)
334 COG1023 Gnd Predicted 6-phosph 52.8 14 0.0003 37.2 3.3 43 69-116 1-43 (300)
335 PRK12921 2-dehydropantoate 2-r 52.7 19 0.0004 35.2 4.3 30 69-101 1-30 (305)
336 PLN02827 Alcohol dehydrogenase 52.6 66 0.0014 32.8 8.4 29 69-100 195-224 (378)
337 cd08263 Zn_ADH10 Alcohol dehyd 52.6 88 0.0019 31.3 9.1 96 69-188 189-286 (367)
338 cd01485 E1-1_like Ubiquitin ac 52.5 10 0.00022 35.8 2.2 24 68-91 19-42 (198)
339 PLN02166 dTDP-glucose 4,6-dehy 52.4 19 0.00042 38.0 4.5 32 68-102 120-152 (436)
340 PLN02695 GDP-D-mannose-3',5'-e 52.3 24 0.00051 36.0 5.1 32 68-102 21-53 (370)
341 KOG0024 Sorbitol dehydrogenase 52.0 16 0.00035 38.0 3.7 101 62-183 164-267 (354)
342 cd08300 alcohol_DH_class_III c 51.9 70 0.0015 32.2 8.4 30 69-101 188-218 (368)
343 PRK15057 UDP-glucose 6-dehydro 51.7 18 0.00039 37.8 4.2 40 69-114 1-40 (388)
344 TIGR01381 E1_like_apg7 E1-like 51.4 7.4 0.00016 43.6 1.3 119 68-190 338-479 (664)
345 cd08233 butanediol_DH_like (2R 51.3 14 0.00031 36.5 3.2 30 69-101 174-204 (351)
346 PRK01710 murD UDP-N-acetylmura 51.2 37 0.0008 35.8 6.4 83 69-183 15-102 (458)
347 TIGR00507 aroE shikimate 5-deh 51.2 58 0.0013 31.8 7.4 31 69-102 118-148 (270)
348 COG1062 AdhC Zn-dependent alco 51.2 31 0.00067 36.2 5.6 97 69-188 187-284 (366)
349 PRK10675 UDP-galactose-4-epime 51.1 22 0.00047 34.9 4.5 31 69-102 1-32 (338)
350 PLN03154 putative allyl alcoho 51.0 76 0.0017 31.9 8.4 30 69-101 160-190 (348)
351 PRK14192 bifunctional 5,10-met 51.0 51 0.0011 33.1 7.1 23 69-91 160-183 (283)
352 KOG0455 Homoserine dehydrogena 50.8 16 0.00035 36.9 3.5 148 68-239 3-166 (364)
353 TIGR00873 gnd 6-phosphoglucona 50.3 17 0.00037 39.0 3.8 153 70-235 1-184 (467)
354 TIGR00561 pntA NAD(P) transhyd 50.3 35 0.00076 37.3 6.2 24 68-91 164-187 (511)
355 cd08232 idonate-5-DH L-idonate 50.2 1E+02 0.0022 30.1 9.0 90 69-184 167-257 (339)
356 TIGR02819 fdhA_non_GSH formald 50.1 91 0.002 32.2 9.0 32 69-103 187-218 (393)
357 cd08278 benzyl_alcohol_DH Benz 50.1 35 0.00075 34.3 5.8 94 69-186 188-282 (365)
358 PLN02572 UDP-sulfoquinovose sy 50.0 28 0.0006 36.7 5.3 31 68-101 47-78 (442)
359 PRK07066 3-hydroxybutyryl-CoA 49.2 24 0.00052 36.1 4.6 30 69-101 8-37 (321)
360 PLN02896 cinnamyl-alcohol dehy 49.2 28 0.00061 34.7 5.0 32 68-102 10-42 (353)
361 cd08260 Zn_ADH6 Alcohol dehydr 48.9 37 0.0008 33.3 5.7 31 69-102 167-197 (345)
362 cd08285 NADP_ADH NADP(H)-depen 48.7 91 0.002 30.8 8.5 30 69-101 168-198 (351)
363 PRK08293 3-hydroxybutyryl-CoA 48.2 27 0.00057 34.4 4.5 30 69-101 4-33 (287)
364 PLN02240 UDP-glucose 4-epimera 48.0 28 0.00061 34.3 4.7 32 68-102 5-37 (352)
365 cd05191 NAD_bind_amino_acid_DH 48.0 34 0.00074 27.5 4.5 22 69-90 24-45 (86)
366 TIGR01470 cysG_Nterm siroheme 47.9 1.4E+02 0.003 28.4 9.2 31 69-102 10-40 (205)
367 PRK09987 dTDP-4-dehydrorhamnos 47.6 32 0.0007 33.7 5.1 29 69-101 1-30 (299)
368 cd01065 NAD_bind_Shikimate_DH 47.4 32 0.0007 29.8 4.6 32 69-102 20-51 (155)
369 cd00704 MDH Malate dehydrogena 47.1 31 0.00067 35.2 5.0 23 69-91 1-24 (323)
370 PRK09291 short chain dehydroge 47.1 30 0.00065 32.2 4.5 33 67-102 1-34 (257)
371 PLN02206 UDP-glucuronate decar 47.0 24 0.00052 37.3 4.3 32 68-102 119-151 (442)
372 cd08295 double_bond_reductase_ 46.9 58 0.0013 32.1 6.8 30 69-101 153-183 (338)
373 TIGR02825 B4_12hDH leukotriene 46.5 94 0.002 30.3 8.1 96 69-188 140-236 (325)
374 PF01073 3Beta_HSD: 3-beta hyd 46.5 70 0.0015 31.6 7.2 19 73-91 2-21 (280)
375 cd01339 LDH-like_MDH L-lactate 46.4 38 0.00083 33.6 5.4 27 71-100 1-28 (300)
376 PRK02318 mannitol-1-phosphate 46.4 24 0.00051 36.5 4.0 31 69-101 1-31 (381)
377 cd05292 LDH_2 A subgroup of L- 45.9 30 0.00065 34.8 4.6 23 69-91 1-23 (308)
378 PRK00258 aroE shikimate 5-dehy 45.6 89 0.0019 30.8 7.8 32 69-102 124-155 (278)
379 PRK14851 hypothetical protein; 45.4 7.4 0.00016 43.7 0.2 99 68-170 43-145 (679)
380 cd01490 Ube1_repeat2 Ubiquitin 45.2 26 0.00056 37.5 4.2 146 70-222 1-165 (435)
381 cd05288 PGDH Prostaglandin deh 44.9 98 0.0021 29.9 7.9 30 69-101 147-177 (329)
382 cd08287 FDH_like_ADH3 formalde 44.9 44 0.00096 32.7 5.6 98 69-189 170-268 (345)
383 cd08234 threonine_DH_like L-th 44.6 1.5E+02 0.0033 28.7 9.2 91 69-184 161-252 (334)
384 cd08261 Zn_ADH7 Alcohol dehydr 44.4 1.7E+02 0.0037 28.6 9.6 39 69-112 161-199 (337)
385 PLN02350 phosphogluconate dehy 44.3 22 0.00047 38.6 3.5 154 69-234 7-192 (493)
386 PLN02702 L-idonate 5-dehydroge 44.3 1.1E+02 0.0023 30.6 8.3 27 158-184 254-280 (364)
387 PRK15181 Vi polysaccharide bio 44.0 31 0.00067 34.6 4.4 31 69-102 16-47 (348)
388 PF00107 ADH_zinc_N: Zinc-bind 44.0 8.3 0.00018 32.4 0.3 36 157-192 57-92 (130)
389 cd01336 MDH_cytoplasmic_cytoso 43.9 35 0.00075 34.8 4.8 34 68-101 2-40 (325)
390 cd08246 crotonyl_coA_red croto 43.6 1.9E+02 0.004 29.3 10.0 30 69-101 195-225 (393)
391 cd08238 sorbose_phosphate_red 43.6 1E+02 0.0023 31.6 8.3 34 157-190 256-289 (410)
392 cd08290 ETR 2-enoyl thioester 43.4 56 0.0012 31.9 6.0 32 69-103 148-180 (341)
393 cd08289 MDR_yhfp_like Yhfp put 43.0 83 0.0018 30.3 7.1 93 70-188 149-242 (326)
394 cd08293 PTGR2 Prostaglandin re 42.8 56 0.0012 32.0 5.9 96 69-188 156-253 (345)
395 PRK04663 murD UDP-N-acetylmura 42.7 1.4E+02 0.0031 31.2 9.2 84 69-183 8-93 (438)
396 TIGR02440 FadJ fatty oxidation 42.7 68 0.0015 36.2 7.2 145 69-233 305-474 (699)
397 cd08270 MDR4 Medium chain dehy 42.3 2.4E+02 0.0051 26.8 10.0 87 69-188 134-221 (305)
398 PRK08017 oxidoreductase; Provi 42.3 39 0.00085 31.4 4.5 31 69-102 3-34 (256)
399 cd05280 MDR_yhdh_yhfp Yhdh and 42.2 1.1E+02 0.0024 29.3 7.8 88 70-183 149-237 (325)
400 cd00650 LDH_MDH_like NAD-depen 42.1 17 0.00037 35.3 2.1 21 71-91 1-22 (263)
401 TIGR03466 HpnA hopanoid-associ 41.7 35 0.00075 32.9 4.2 30 70-102 2-32 (328)
402 PRK14806 bifunctional cyclohex 41.6 34 0.00073 38.2 4.6 33 69-102 4-36 (735)
403 PRK08328 hypothetical protein; 41.6 15 0.00032 35.5 1.6 24 68-91 27-50 (231)
404 cd08248 RTN4I1 Human Reticulon 41.3 1.1E+02 0.0024 29.8 7.8 31 69-102 164-195 (350)
405 PRK15182 Vi polysaccharide bio 41.3 31 0.00068 36.5 4.1 30 69-102 7-36 (425)
406 PRK08223 hypothetical protein; 41.0 19 0.0004 36.5 2.2 98 68-169 27-128 (287)
407 PRK07326 short chain dehydroge 40.8 42 0.00091 30.8 4.4 31 69-102 7-38 (237)
408 PLN00198 anthocyanidin reducta 40.7 40 0.00086 33.3 4.5 30 68-100 9-39 (338)
409 PRK07411 hypothetical protein; 40.7 13 0.00028 38.8 1.1 111 68-184 38-155 (390)
410 PRK06019 phosphoribosylaminoim 40.4 41 0.00088 34.5 4.7 31 69-102 3-33 (372)
411 TIGR01214 rmlD dTDP-4-dehydror 40.3 37 0.00081 32.3 4.1 29 70-101 1-30 (287)
412 cd08292 ETR_like_2 2-enoyl thi 39.4 41 0.00089 32.3 4.3 32 69-103 141-173 (324)
413 cd05279 Zn_ADH1 Liver alcohol 39.0 1E+02 0.0022 31.0 7.2 23 69-91 185-207 (365)
414 KOG0023 Alcohol dehydrogenase, 38.9 67 0.0014 33.6 5.8 99 68-193 182-283 (360)
415 PF02558 ApbA: Ketopantoate re 38.5 52 0.0011 28.6 4.4 29 71-102 1-29 (151)
416 PRK07878 molybdopterin biosynt 38.4 16 0.00035 38.1 1.4 112 68-183 42-158 (392)
417 PRK12771 putative glutamate sy 38.4 12 0.00027 40.4 0.5 31 68-101 137-167 (564)
418 PF01370 Epimerase: NAD depend 38.3 72 0.0016 29.0 5.6 32 71-105 1-33 (236)
419 PRK07023 short chain dehydroge 38.3 45 0.00097 31.0 4.2 30 69-101 2-32 (243)
420 cd05281 TDH Threonine dehydrog 38.3 52 0.0011 32.4 4.9 29 69-100 165-194 (341)
421 TIGR01181 dTDP_gluc_dehyt dTDP 38.1 42 0.00091 32.0 4.1 32 70-102 1-33 (317)
422 PRK06719 precorrin-2 dehydroge 37.8 52 0.0011 29.9 4.5 30 69-101 14-43 (157)
423 TIGR02279 PaaC-3OHAcCoADH 3-hy 37.4 44 0.00094 36.2 4.5 31 69-102 6-36 (503)
424 cd01492 Aos1_SUMO Ubiquitin ac 37.1 75 0.0016 29.9 5.6 24 68-91 21-44 (197)
425 TIGR01758 MDH_euk_cyt malate d 37.0 50 0.0011 33.7 4.6 21 70-90 1-22 (324)
426 cd08240 6_hydroxyhexanoate_dh_ 36.6 2E+02 0.0044 28.3 8.8 91 69-183 177-268 (350)
427 cd04885 ACT_ThrD-I Tandem C-te 36.6 1.8E+02 0.0039 22.2 6.7 58 286-344 4-61 (68)
428 cd08259 Zn_ADH5 Alcohol dehydr 36.6 1.3E+02 0.0027 28.9 7.2 30 69-101 164-194 (332)
429 PF00070 Pyr_redox: Pyridine n 36.5 73 0.0016 24.9 4.6 32 70-102 1-32 (80)
430 COG1086 Predicted nucleoside-d 36.0 59 0.0013 36.2 5.2 118 69-204 251-389 (588)
431 PRK12745 3-ketoacyl-(acyl-carr 36.0 57 0.0012 30.3 4.5 33 67-102 1-34 (256)
432 PRK14620 NAD(P)H-dependent gly 35.9 52 0.0011 32.8 4.5 23 69-91 1-23 (326)
433 PRK08762 molybdopterin biosynt 35.9 20 0.00044 36.9 1.6 34 67-102 134-167 (376)
434 TIGR01751 crot-CoA-red crotony 35.8 2E+02 0.0043 29.3 8.8 29 69-100 191-220 (398)
435 KOG1399 Flavin-containing mono 35.8 36 0.00078 36.5 3.5 25 66-90 4-28 (448)
436 PRK05653 fabG 3-ketoacyl-(acyl 35.6 60 0.0013 29.6 4.6 31 69-102 6-37 (246)
437 PRK14175 bifunctional 5,10-met 35.5 1.4E+02 0.0031 30.2 7.5 86 68-207 158-247 (286)
438 PF00289 CPSase_L_chain: Carba 35.2 46 0.001 28.7 3.5 31 69-102 3-33 (110)
439 PRK10538 malonic semialdehyde 35.2 56 0.0012 30.6 4.4 30 69-101 1-31 (248)
440 PF12953 DUF3842: Domain of un 35.1 3.5E+02 0.0076 24.7 9.3 106 73-208 5-119 (131)
441 PRK05586 biotin carboxylase; V 35.0 48 0.001 34.8 4.3 31 68-101 2-32 (447)
442 PRK12320 hypothetical protein; 34.8 50 0.0011 37.5 4.6 31 69-102 1-32 (699)
443 cd05284 arabinose_DH_like D-ar 34.5 55 0.0012 31.9 4.4 32 69-102 169-200 (340)
444 cd01489 Uba2_SUMO Ubiquitin ac 34.3 40 0.00087 34.5 3.4 98 70-176 1-108 (312)
445 cd04886 ACT_ThrD-II-like C-ter 34.2 1.6E+02 0.0034 21.4 6.0 58 287-344 5-66 (73)
446 KOG2380 Prephenate dehydrogena 34.2 50 0.0011 35.0 4.1 26 66-91 50-75 (480)
447 COG5322 Predicted dehydrogenas 34.2 99 0.0021 31.8 6.0 59 160-222 232-291 (351)
448 TIGR00715 precor6x_red precorr 34.1 36 0.00079 33.7 3.0 28 69-100 1-29 (256)
449 PLN02583 cinnamoyl-CoA reducta 34.0 58 0.0013 31.8 4.4 30 70-102 8-38 (297)
450 PRK10217 dTDP-glucose 4,6-dehy 34.0 53 0.0011 32.6 4.2 23 69-91 2-25 (355)
451 COG0621 MiaB 2-methylthioadeni 34.0 48 0.001 35.6 4.1 74 166-270 167-246 (437)
452 PRK02705 murD UDP-N-acetylmura 33.9 1.9E+02 0.0041 30.1 8.5 29 70-102 2-30 (459)
453 PRK08219 short chain dehydroge 33.8 57 0.0012 29.6 4.1 31 68-102 3-34 (227)
454 PRK12826 3-ketoacyl-(acyl-carr 33.4 60 0.0013 29.9 4.2 32 68-102 6-38 (251)
455 cd01337 MDH_glyoxysomal_mitoch 33.2 61 0.0013 33.0 4.5 23 69-91 1-24 (310)
456 COG0373 HemA Glutamyl-tRNA red 33.0 49 0.0011 35.3 3.9 33 69-103 179-211 (414)
457 PRK05396 tdh L-threonine 3-deh 33.0 1.4E+02 0.0031 29.2 7.1 29 69-100 165-194 (341)
458 TIGR01777 yfcH conserved hypot 32.9 49 0.0011 31.3 3.6 29 71-102 1-30 (292)
459 PLN02948 phosphoribosylaminoim 32.9 77 0.0017 35.0 5.5 33 67-102 21-53 (577)
460 cd08279 Zn_ADH_class_III Class 32.9 63 0.0014 32.3 4.6 30 69-101 184-214 (363)
461 TIGR01408 Ube1 ubiquitin-activ 32.8 41 0.00088 39.7 3.6 162 68-236 419-607 (1008)
462 cd01080 NAD_bind_m-THF_DH_Cycl 32.8 1E+02 0.0022 28.6 5.6 33 68-103 44-77 (168)
463 cd08249 enoyl_reductase_like e 32.7 1.1E+02 0.0024 30.2 6.2 95 69-188 156-253 (339)
464 cd08256 Zn_ADH2 Alcohol dehydr 32.7 3.3E+02 0.0071 26.9 9.6 22 70-91 177-198 (350)
465 PRK06947 glucose-1-dehydrogena 32.6 66 0.0014 29.8 4.4 31 67-100 1-32 (248)
466 PF07683 CobW_C: Cobalamin syn 32.5 59 0.0013 26.1 3.6 48 323-370 2-52 (94)
467 smart00833 CobW_C Cobalamin sy 32.3 74 0.0016 25.3 4.1 49 324-372 3-55 (92)
468 cd08243 quinone_oxidoreductase 32.3 1.1E+02 0.0024 29.0 6.0 89 69-184 144-233 (320)
469 PRK03815 murD UDP-N-acetylmura 32.2 56 0.0012 34.2 4.2 29 69-102 1-29 (401)
470 PRK10537 voltage-gated potassi 32.0 59 0.0013 34.2 4.3 30 69-101 241-270 (393)
471 PRK06046 alanine dehydrogenase 31.9 89 0.0019 31.6 5.5 34 68-103 129-162 (326)
472 KOG0022 Alcohol dehydrogenase, 31.9 61 0.0013 33.9 4.2 30 69-100 194-223 (375)
473 PRK12827 short chain dehydroge 31.7 71 0.0015 29.3 4.4 31 68-101 6-37 (249)
474 PLN02858 fructose-bisphosphate 31.4 56 0.0012 39.9 4.5 33 67-102 323-355 (1378)
475 TIGR01472 gmd GDP-mannose 4,6- 31.3 64 0.0014 32.0 4.3 30 70-102 2-32 (343)
476 cd08244 MDR_enoyl_red Possible 31.3 3E+02 0.0065 26.3 8.8 31 69-102 144-175 (324)
477 cd08265 Zn_ADH3 Alcohol dehydr 31.2 74 0.0016 32.2 4.8 29 69-100 205-234 (384)
478 PF07991 IlvN: Acetohydroxy ac 31.1 66 0.0014 30.3 4.0 32 69-103 5-36 (165)
479 cd05278 FDH_like Formaldehyde 30.9 2E+02 0.0042 28.1 7.6 29 69-100 169-198 (347)
480 KOG2250 Glutamate/leucine/phen 30.9 2.6E+02 0.0056 30.8 8.8 98 68-183 251-359 (514)
481 PRK06924 short chain dehydroge 30.9 74 0.0016 29.5 4.4 29 70-101 3-32 (251)
482 cd05285 sorbitol_DH Sorbitol d 30.9 2E+02 0.0044 28.2 7.7 29 69-100 164-193 (343)
483 TIGR01179 galE UDP-glucose-4-e 30.7 66 0.0014 30.7 4.2 29 70-101 1-30 (328)
484 PRK05884 short chain dehydroge 30.0 78 0.0017 29.5 4.4 29 70-101 2-31 (223)
485 PLN02353 probable UDP-glucose 29.9 71 0.0015 34.5 4.6 32 69-101 2-33 (473)
486 PLN02650 dihydroflavonol-4-red 29.8 67 0.0015 31.9 4.2 30 69-101 6-36 (351)
487 PRK04435 hypothetical protein; 29.7 1.6E+02 0.0035 26.6 6.2 74 277-354 65-139 (147)
488 TIGR00514 accC acetyl-CoA carb 29.5 70 0.0015 33.5 4.4 33 67-102 1-33 (449)
489 COG1179 Dinucleotide-utilizing 29.4 61 0.0013 32.6 3.7 146 69-236 31-185 (263)
490 PRK05086 malate dehydrogenase; 29.0 83 0.0018 31.8 4.7 21 69-89 1-22 (312)
491 PRK07231 fabG 3-ketoacyl-(acyl 28.9 83 0.0018 29.0 4.4 31 69-102 6-37 (251)
492 PRK08125 bifunctional UDP-gluc 28.8 73 0.0016 35.3 4.6 33 68-102 315-348 (660)
493 PRK07578 short chain dehydroge 28.5 1.2E+02 0.0026 27.3 5.2 28 70-101 2-30 (199)
494 PRK05565 fabG 3-ketoacyl-(acyl 28.3 90 0.002 28.6 4.5 29 69-100 6-35 (247)
495 TIGR01082 murC UDP-N-acetylmur 28.3 2.7E+02 0.0058 29.2 8.5 30 70-103 1-31 (448)
496 PRK10754 quinone oxidoreductas 27.8 62 0.0014 31.4 3.5 31 69-102 142-173 (327)
497 cd05286 QOR2 Quinone oxidoredu 27.6 3.1E+02 0.0067 25.6 8.1 30 69-101 138-168 (320)
498 TIGR03570 NeuD_NnaD sugar O-ac 27.4 99 0.0021 27.6 4.5 30 70-102 1-30 (201)
499 PRK07577 short chain dehydroge 27.3 92 0.002 28.5 4.3 30 69-101 4-34 (234)
500 cd00300 LDH_like L-lactate deh 27.3 1.3E+02 0.0029 30.0 5.8 21 71-91 1-21 (300)
No 1
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=100.00 E-value=6.7e-129 Score=993.38 Aligned_cols=384 Identities=76% Similarity=1.166 Sum_probs=368.4
Q ss_pred CcccccccccccCCCCCcCCC-CCcchhhhhhhhhccCCCcccccccccccceeEEEEccChhHHHHHHHHHhCCCCCce
Q 014890 18 KGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLE 96 (416)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~ 96 (416)
-.|++|+|||+++++++++.. +.+|++.++.|+.++.++ +.+.+..++|++||||||||||||+++|++++++++++|
T Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ikVgINGFGRIGR~vlR~~~~~~~~~ie 103 (442)
T PLN02237 25 LEVAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAG-STPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLD 103 (442)
T ss_pred ccccccccccccccccccccccchhHHHHhhhhhhhhhcc-cccccccccceEEEEEECCChHHHHHHHHHHHccCCCeE
Confidence 469999999999999998765 788999999999988887 888999999999999999999999999999876334699
Q ss_pred EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHH
Q 014890 97 VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176 (416)
Q Consensus 97 vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~ 176 (416)
||||||+.++++++|||||||+||+|+++|+..+++.|.|+|++|+++++++|.++||+++|+||||||||.|+++++++
T Consensus 104 vVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s~e~a~ 183 (442)
T PLN02237 104 VVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAG 183 (442)
T ss_pred EEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcCCchhCChhhcCCCEEEEccChhhhHHHHH
Confidence 99999999999999999999999999999983388999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEE
Q 014890 177 KHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKG 254 (416)
Q Consensus 177 ~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~ 254 (416)
+|+++|||||+||+|.++ ++||||||||++.|++. ++||||||||||||+|++|+||++| ||+++
T Consensus 184 ~hl~aGAkkV~iSAP~~d~dvptvV~GVN~~~~~~~~~~IISnaSCTTNcLAPvlkvL~d~f-------------GI~~g 250 (442)
T PLN02237 184 KHIQAGAKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEF-------------GIVKG 250 (442)
T ss_pred HHHhCCCEEEEECCCCCCCCCceEecccCHHHhCcCCCCEEECCchHHHHHHHHHHHHHHhc-------------CeeEE
Confidence 999999999999999987 58999999999999886 7899999999999999999999999 99999
Q ss_pred EEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEcc-CC
Q 014890 255 TMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSK-KT 333 (416)
Q Consensus 255 ~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k-~v 333 (416)
+|||||+||++|+++|.+|+||||+|+|++||||++||++|++.+|||+|+|||+|+++||||++||++||+++++| ++
T Consensus 251 ~mTTvHs~T~dQ~~~D~~h~D~Rr~Raaa~nIIPtsTGAAkAv~~VlP~L~GKl~g~A~RVPt~nvS~vDLt~~l~k~~~ 330 (442)
T PLN02237 251 TMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGI 330 (442)
T ss_pred EEEEEEeccCCcccccCCCcccccccccccccccCCcchhhhhceecccCCCceeeEEEecccCCceEEEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 334 FAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 334 s~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++|+|+++||||||||||||+||+.||.+
T Consensus 331 t~eein~~~k~aa~~~lkgil~y~~~plVS~Df~~~~~Ssi~D~~~t~v~~~~~vKv~aWYDNEwGys~R~~dl~~~~~~ 410 (442)
T PLN02237 331 TAEDVNAAFRKAADGPLKGILAVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAA 410 (442)
T ss_pred CHHHHHHHHHHhhccccCCeeeeeCCceeeeeecCCCcceEEEcccCEEeCCCEEEEEEEeCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 014890 414 NW 415 (416)
Q Consensus 414 ~~ 415 (416)
+|
T Consensus 411 ~~ 412 (442)
T PLN02237 411 KW 412 (442)
T ss_pred hh
Confidence 64
No 2
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.7e-125 Score=960.90 Aligned_cols=394 Identities=86% Similarity=1.314 Sum_probs=374.5
Q ss_pred ccccccccccCCCcccccccccccCCCCCcCCC-CCcchhhhhhhhhccCCCcccccccccccceeEEEEccChhHHHHH
Q 014890 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFL 84 (416)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ikVaINGfGrIGR~vl 84 (416)
++++++++|+.+++|++|+|||++++.++++.. +++| ++.|+.++.++ ..+.+..++|++||||||||||||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~kVaInGfGrIGR~vl 76 (395)
T PLN03096 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSLDF---VVFATSAVSSS-GGARRAVTEAKIKVAINGFGRIGRNFL 76 (395)
T ss_pred CCccchhhhcccCcccccccccccCcccccccccchhh---hhhhhhhhhcc-ccccccccccccEEEEECcCHHHHHHH
Confidence 367889999999999999999998888887655 4445 77777777666 778889999999999999999999999
Q ss_pred HHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCCCCCCCccccEEEc
Q 014890 85 RCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIE 164 (416)
Q Consensus 85 r~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie 164 (416)
|+|++++.+.++||||||+.++++++|||+|||+||+|+++|+..+++.|.|+|++|++++++||+++||+++|+|||||
T Consensus 77 r~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~dp~~~~w~~~gvDiVie 156 (395)
T PLN03096 77 RCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIE 156 (395)
T ss_pred HHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcCCcccccccccCCCEEEE
Confidence 99998754569999999999999999999999999999999974578999999999999999999999999999999999
Q ss_pred CCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhccccc
Q 014890 165 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244 (416)
Q Consensus 165 ~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~ 244 (416)
|||.|.+++++++|+++|||||+||+|.++++||||||||++.|+++++||||||||||||+|++|+||++|
T Consensus 157 ~TG~f~s~~~a~~hl~aGAkkV~iSap~~~~~ptvV~GVN~~~l~~~~~IISnaSCTTn~LAp~lkvL~~~f-------- 228 (395)
T PLN03096 157 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKF-------- 228 (395)
T ss_pred CcchhhhHHHHHHHHHCCCEEEEeCCCCCCCCCeEeCccCHHHhccCCCEEECCchHHHHHHHHHHHHHHhc--------
Confidence 999999999999999999999999999887889999999999998878999999999999999999999999
Q ss_pred cccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEE
Q 014890 245 FPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVD 324 (416)
Q Consensus 245 ~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vd 324 (416)
||++++|||||+||++|+++|.+|+|+||+|++++||||++||++|++++|||+|+|||+|+||||||++||++|
T Consensus 229 -----GI~~g~mTTiHa~T~~Q~llD~~~~d~rr~Raaa~NiIPtsTGaakav~kVlP~L~gkl~g~avRVPv~~gs~~d 303 (395)
T PLN03096 229 -----GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVD 303 (395)
T ss_pred -----CeeEEEEEEEEccccccccccCCCCccccchhhhccccccCCCcchhhhhcccccCCcEEEEEEEccccceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecCCcchhhhH
Q 014890 325 LVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRV 404 (416)
Q Consensus 325 l~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE~gys~R~ 404 (416)
|++++++++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++|+|+++||||||||||||
T Consensus 304 ltv~~~~~~t~eev~~al~~aa~~~l~gil~~~~~p~VS~Df~~~~~Ssi~d~~~t~v~~~~~vKv~~WYDNE~Gys~r~ 383 (395)
T PLN03096 304 LVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRV 383 (395)
T ss_pred EEEEECCCCCHHHHHHHHHhhhhccccceEEEeCCCEeeeeecCCCCceEEEcccCEEeCCCEEEEEEEecCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCC
Q 014890 405 VDLADIVANNWK 416 (416)
Q Consensus 405 vdl~~~~~~~~~ 416 (416)
+||+.+|.++|+
T Consensus 384 ~dl~~~~~~~~~ 395 (395)
T PLN03096 384 VDLADIVANKWK 395 (395)
T ss_pred HHHHHHHHhhcC
Confidence 999999988763
No 3
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-125 Score=944.32 Aligned_cols=336 Identities=47% Similarity=0.786 Sum_probs=321.8
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCC--CCCceEEEEec-CCChhHHhhhhccccccccCCCceeee--------cCCeE
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPV--------GTDGI 134 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~--~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~--------~~~~i 134 (416)
.|++||||||||||||.++|+++++. .++++|||||| +.++++++|||||||+||+|+++|+ . +++.|
T Consensus 1 ~m~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~-~~~~~~~~~~~~~l 79 (361)
T PTZ00434 1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVE-TTKSSPSVKTDDVL 79 (361)
T ss_pred CCceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCcee-ecccccccccCCEE
Confidence 36789999999999999999988752 24599999999 7899999999999999999999998 6 78999
Q ss_pred EECCEEEEEE-eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC-CC
Q 014890 135 SVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DE 212 (416)
Q Consensus 135 ~v~G~~I~v~-~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~-~~ 212 (416)
.|||++|.++ +++||.+|||+++|+||||||||.|++++.+..||++||||||||||++++.|||||||||+.|++ .+
T Consensus 80 ~ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~ 159 (361)
T PTZ00434 80 VVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEH 159 (361)
T ss_pred EECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccC
Confidence 9999999986 999999999999999999999999999999999999999999999999875689999999999998 47
Q ss_pred CeEecCCcchhhhHHHHHHH-HHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCC
Q 014890 213 PIISNASCTTNCLAPFVKVL-DQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTS 290 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL-~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~ 290 (416)
+||||+|||||||||++|+| ||+| ||++|+|||||+||++|+++|.+ |+||||+|+|++||||++
T Consensus 160 ~IiSnASCTTNcLAP~~kvL~~~~f-------------GI~~g~mTTVHayT~~Q~~~D~~~~kD~Rr~Raaa~nIIPts 226 (361)
T PTZ00434 160 HVVSNASCTTNCLAPIVHVLTKEGF-------------GIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPST 226 (361)
T ss_pred cEEECCChHHHhhHHHHHHhhcCCc-------------ceEEEEEEEEecccCCcccccCcCcccccccccccccCccCC
Confidence 89999999999999999999 7999 99999999999999999999988 699999999999999999
Q ss_pred CChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCC
Q 014890 291 TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSD 370 (416)
Q Consensus 291 tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~ 370 (416)
||+||++++|||+|+|||+|+|+||||++||++||+++++|++++||||++|++|++++|||||+|+|+|+||+||+|++
T Consensus 227 TGAAkAv~~VlP~L~GKl~G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa~~~lkgIl~y~~~plVS~Df~g~~ 306 (361)
T PTZ00434 227 TGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGILGFTDDELVSADFINDN 306 (361)
T ss_pred cchhhhhceeccccCCceeeEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhhhccccCcccccCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeCCCCcccC----CceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 371 VSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 371 ~S~i~D~~~t~v~~----~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
||+|||+.+|++++ ++++|+++||||||||||||+||+.+|.+.+
T Consensus 307 ~Ssi~D~~~t~v~~~~~~~~~vKv~~WYDNEwGys~Rl~dl~~~~~~~~ 355 (361)
T PTZ00434 307 RSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVRYMAAKD 355 (361)
T ss_pred CCeEEEhhhCeEeccCCCCCEEEEEEEecCchHHHHHHHHHHHHHHhcc
Confidence 99999999999996 4899999999999999999999999997654
No 4
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-118 Score=892.48 Aligned_cols=334 Identities=73% Similarity=1.143 Sum_probs=322.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||+++|+++++++++++||||||+.++++++|||||||+||+|+++++ .+++.|.|+|++|++++++
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS-ADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEE-EcCCEEEECCEEEEEEEcC
Confidence 379999999999999999988763346999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~L 225 (416)
||+++||+++|+|+||||||.|+++++++.|+++|||||++|+|+++ |+||||||||++.|++. ++||||||||||||
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCTTn~L 159 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCL 159 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCCCCCCceEecccCHHHhccCCCCEEECCcHHHHHH
Confidence 99999999999999999999999999999999999999999999876 46999999999999864 78999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHccccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~ 305 (416)
+|++|+||++| ||+++.|||||+||++|+++|.+|+||||+|++++||||++||++|++++|||+|+
T Consensus 160 ap~lkvL~~~f-------------gI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~ 226 (337)
T PRK07403 160 APIAKVLHDNF-------------GIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELK 226 (337)
T ss_pred HHHHHHHHHhc-------------CeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCC
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGD 385 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~ 385 (416)
|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++
T Consensus 227 gki~g~avRVPt~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~ 306 (337)
T PRK07403 227 GKLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDYRGTDASSIVDASLTMVMGG 306 (337)
T ss_pred CcEEEEEEEeccCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecCCEeeeeecCCCCCEEEEcccCEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 386 DMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
+|+|+++||||||||||||+||+.+|.++.
T Consensus 307 ~~~k~~~WyDNE~Gys~r~~dl~~~~~~~~ 336 (337)
T PRK07403 307 DMVKVIAWYDNEWGYSQRVVDLAELVARKW 336 (337)
T ss_pred CEEEEEEEecCchhHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998754
No 5
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=1.7e-117 Score=886.78 Aligned_cols=330 Identities=48% Similarity=0.808 Sum_probs=320.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||.++|++++++ ++|||||||+.++++++|||||||+||+|+++|+ .+++.|.|+|++|.++++
T Consensus 1 m~~~i~inGfGRIGr~~~r~~~~~~--~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (331)
T PRK15425 1 MTIKVGINGFGRIGRIVFRAAQKRS--DIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAE 77 (331)
T ss_pred CceEEEEEeeChHHHHHHHHHHHCC--CCEEEEEecCCCHHHHHHHHccccCCCCcCCcEE-ecCCEEEECCeEEEEEEc
Confidence 5589999999999999999998764 5999999999999999999999999999999999 889999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
++|+++||+++|+|+||||||.|+++++|++|+++|||||++|+|+++++|+||||||++.|++ ++||||||||||||+
T Consensus 78 ~dp~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~~~vp~vV~gVN~~~~~~-~~IISnaSCtTn~La 156 (331)
T PRK15425 78 RDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG-QDIVSNASCTTNCLA 156 (331)
T ss_pred CChhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCCCCCCEEEcccCHHHcCC-CCEEECCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999998777899999999999975 789999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHccccc
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~ 305 (416)
|++|+||++| ||+++.|||||+||++|+++|.+ |+|+||+|++++||||++||+++++++|||+|+
T Consensus 157 pvlk~L~~~f-------------gI~~g~mTTvha~T~~q~llD~~~~~d~r~~R~aa~NiIPt~tGaa~av~kIlP~L~ 223 (331)
T PRK15425 157 PLAKVINDNF-------------GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELN 223 (331)
T ss_pred HHHHHHHHhC-------------CeEEEEEEEEEeccCccccccCCCCcccccCcchhhceecccCCchHHHHhhccccC
Confidence 9999999999 99999999999999999999966 689999999999999999999999999999999
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCC
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGD 385 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~ 385 (416)
|||+|+|+||||++||++||++++++++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++
T Consensus 224 gkl~g~avRVPv~~gs~~dltv~l~~~~t~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~ssi~d~~~t~v~~~ 303 (331)
T PRK15425 224 GKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALND 303 (331)
T ss_pred CeEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhhccccccccccCCcEeeeecCCCCcceEEEcccCEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 386 DMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+++|+++||||||||||||+||+.+|.+
T Consensus 304 ~~~k~~~WyDNE~gys~r~~d~~~~~~~ 331 (331)
T PRK15425 304 NFVKLVSWYDNETGYSNKVLDLIAHISK 331 (331)
T ss_pred CEEEEEEEecCchhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999853
No 6
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-117 Score=886.96 Aligned_cols=333 Identities=47% Similarity=0.788 Sum_probs=323.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||||||||||.++|++++++ +++|||||| +.++++++|||||||+||+|+++|+ .+++.|.|||++|++++
T Consensus 1 m~~ki~INGfGRIGr~v~r~~~~~~--~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~i~g~~i~~~~ 77 (337)
T PTZ00023 1 MVVKLGINGFGRIGRLVFRAALERE--DVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVS-VTDGFLMIGSKKVHVFF 77 (337)
T ss_pred CceEEEEECcChHHHHHHHHHHhcC--CeEEEEecCCCCChHHhhhhheeecCCCCCCCcEE-ecCCEEEECCeEEEEEe
Confidence 5689999999999999999998764 499999999 6899999999999999999999999 89999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
++||.++||++.|+|+||||||.|+++++++.|+++|||||++|+|.++++|+||||||++.|++.++||||||||||||
T Consensus 78 ~~dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~~~vp~vV~gVN~~~~~~~~~IISnasCTTn~L 157 (337)
T PTZ00023 78 EKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCL 157 (337)
T ss_pred CCChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCCCCCCeEEcccCHHHhCCCCCEEECCccHHHHH
Confidence 99999999999999999999999999999999999999999999998877899999999999987788999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc---hhHHHhhhccccccccCCCChHHHHHHHcc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS---HRDLRRARAAALNIVPTSTGAAKAVALVLP 302 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~---~~d~rr~Raaa~NIIPt~tGaakav~kVlP 302 (416)
+|++|+||++| ||+++.|||||+||++|.++|.+ ++||||+|++++||||++||++|++++|||
T Consensus 158 ap~lk~L~~~f-------------gI~~~~~TT~ha~T~~Q~lld~~~~~~kd~r~~r~~a~NiIP~~tGaakav~kVlP 224 (337)
T PTZ00023 158 APLAKVVNDKF-------------GIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIP 224 (337)
T ss_pred HHHHHHHHHhc-------------CeeEEEEEEEEecCCCceecCCcCcccCCCcccceeeccccccCCCcchhhhheec
Confidence 99999999999 99999999999999999999965 589999999999999999999999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
+|+|||+|+|+||||+++|++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++
T Consensus 225 eL~gkl~g~avRVPt~~~s~~dltv~l~k~vt~eev~~al~~aa~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~v 304 (337)
T PTZ00023 225 ELNGKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSDFVHDKRSSIFDVKAGIA 304 (337)
T ss_pred ccCCcEEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHHHhcccccCCcCccCCCeeeeecCCCCCCeEEEcccCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 383 MGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 383 ~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
++++|+|+++||||||||||||+||+.+|.+|+
T Consensus 305 ~~~~~~k~~~WyDNE~gys~r~~d~~~~~~~~~ 337 (337)
T PTZ00023 305 LNDTFVKLVSWYDNEWGYSNRLLDLAHYITQKY 337 (337)
T ss_pred ecCCEEEEEEEecCchhHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998764
No 7
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-116 Score=883.06 Aligned_cols=333 Identities=57% Similarity=0.891 Sum_probs=322.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||||||||||.++|++++++ +++||||||+.++++++|||||||+||+|+++|+ .+++.|.|+|++|+++++
T Consensus 1 m~~ki~INGfGRIGR~~~r~~~~~~--~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~-~~~~~l~v~g~~I~v~~~ 77 (343)
T PRK07729 1 MKTKVAINGFGRIGRMVFRKAIKES--AFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE-AFEDHLLVDGKKIRLLNN 77 (343)
T ss_pred CceEEEEECcChHHHHHHHHHhhcC--CcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEc
Confidence 6789999999999999999998864 4999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCC-CCeEecCCcchhhh
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCL 225 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~-~~IISnaSCTTn~L 225 (416)
++|+++||++.|+||||||||.|+++++++.|+++|||||++|+|++++++++|+|||++.|++. ++||||||||||||
T Consensus 78 ~dp~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~d~d~~lV~gVN~~~~~~~~~~IISnaSCTTn~L 157 (343)
T PRK07729 78 RDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCL 157 (343)
T ss_pred CChhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCCCCCCCcEEecccHHHhccCCCCEEECCchHHHHH
Confidence 99999999999999999999999999999999999999999999988756677999999999873 78999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHccccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~ 305 (416)
+|++|+||++| ||+++.|||||+||++|+++|.+|+||||+|++++||||++||+++++.+|||+|+
T Consensus 158 ap~lk~L~~~f-------------gI~~~~mTTiha~T~~Q~~~D~~~~d~rr~R~a~~niiPtstgaa~ai~~viP~l~ 224 (343)
T PRK07729 158 APVVKVLDEQF-------------GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLN 224 (343)
T ss_pred HHHHHHHHHhc-------------CeeEEEEEEEecccCcccccccchhhhhcccccccceecCCCcchhhHHHhccccC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCC
Q 014890 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGD 385 (416)
Q Consensus 306 gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~ 385 (416)
|||+|+|+||||+++|++||+++++|++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++
T Consensus 225 gkl~g~avRVPt~~~s~~dltv~l~k~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~D~~~t~v~~~ 304 (343)
T PRK07729 225 GKLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGD 304 (343)
T ss_pred CeEEEEEEEeeecCeEEEEEEEEECCCCCHHHHHHHHHHHhhCchhhccCccCCCccccccCCCCcceEEEcccCeEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 386 DMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
+++|+++||||||||||||+||+.+|.+++
T Consensus 305 ~~~K~~~WYDNE~Gys~r~~dl~~~~~~~~ 334 (343)
T PRK07729 305 RKVKVLAWYDNEWGYSCRVVDLVTLVADEL 334 (343)
T ss_pred CEEEEEEEecCchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998764
No 8
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-115 Score=862.81 Aligned_cols=333 Identities=59% Similarity=0.937 Sum_probs=324.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||||||||||+++|++.++++ +||||||||+.+++++||||||||+||+|+++|+ .+++.+.|+|+.|+++.++
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~-dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~-~~~~~~~v~g~~I~v~~~~ 78 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDG-DIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE-VKDDALVVNGKGIKVLAER 78 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCC-CeEEEEEecCCCHHHHHHHHhhcccCCCCCCccc-ccCCeEEECCceEEEEecC
Confidence 4799999999999999999999862 5999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHc-CCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~a-GAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
+|++|||+++|+|+|+||||.|+++|.+++|+++ |||||+|+||+++++++||+|||++.|++.+.||||+|||||||+
T Consensus 79 ~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLa 158 (335)
T COG0057 79 DPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLA 158 (335)
T ss_pred ChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhH
Confidence 9999999999999999999999999999999998 599999999999889999999999999988999999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++|+|||+|+||++|+++|.+|+||||+|+|++||||++||+||++++|||+|+|
T Consensus 159 p~~kvl~d~f-------------GI~~g~mTtVh~~T~dQ~~~dgph~~~rr~raa~~niIp~sTgaAkav~~VlP~L~g 225 (335)
T COG0057 159 PVAKVLNDAF-------------GIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKG 225 (335)
T ss_pred HHHHHHHHhc-------------CeeEEEEEEEEcccCCCccccCcccchhhhccccCCCCcCCCcchhhhhhhCcccCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+|+||||+++|++||+++++|++++||||++|++++++.|||+++|+|+|+||+||+|++||+|||+++|++++++
T Consensus 226 Kl~g~A~RVPt~~vs~~dl~v~l~k~~t~eeIn~alk~as~~~lkg~~~y~e~~~Vs~D~~~~~~ssI~d~~~t~~~~~~ 305 (335)
T COG0057 226 KLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDFNGDPHSSIFDASATIVLGGN 305 (335)
T ss_pred ceeeEEEEecCCCcEEEEEEEEeCCCCCHHHHHHHHHHhhcccccceeeeEeccccccccCCCcceeEEEccceEeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
++|+++||||||||++|++|+..++...+
T Consensus 306 ~vk~~~wydNE~gys~r~vD~~~~~~~~~ 334 (335)
T COG0057 306 LVKLVAWYDNEWGYSNRVVDLLAMVAKAL 334 (335)
T ss_pred EEEEEEEEeccccchHHHHHHHHHHhhhc
Confidence 99999999999999999999988877654
No 9
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=3.1e-113 Score=875.70 Aligned_cols=329 Identities=49% Similarity=0.819 Sum_probs=318.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||||||||||.++|++.++. +++|||||| ..++++++|||||||+||+|+++|+..+++.|.|+|++|+|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~--~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~ 163 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRD--DIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR 163 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcC--CcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence 79999999999999999998753 499999999 789999999999999999999999922889999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
+|.++||+++|+||||||||.|+++++++.|+++||||||||+|++ |+|+||||||++.|+++++||||||||||||+|
T Consensus 164 dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~-dvPlvV~gVN~~~l~~~~~IISnaSCTTn~Lap 242 (421)
T PLN02272 164 DPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSA-DAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAP 242 (421)
T ss_pred CcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCC-CCCeEEeccCHHHhCCCCCeeeCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 489999999999999878999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
++|+||++| ||++++|||||+||++|+++|.+ |+|+||+|++++||||++||++|+++||||+|+|
T Consensus 243 ~lk~L~~~f-------------GI~~g~mTTvha~T~tQ~llD~~~~~d~r~~R~aa~NIIPt~tGaakav~kVLP~L~g 309 (421)
T PLN02272 243 LAKVVHEEF-------------GILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNG 309 (421)
T ss_pred HHHHHHHhC-------------CeEEEEEEEEEeccCccccccCccccccccCCCcccccccCCCccchhhhhcccccCC
Confidence 999999999 99999999999999999999966 6899999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
||+|+||||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|++++++
T Consensus 310 kl~gtaVRVPv~~gs~~dltv~lek~~s~eev~~alk~a~~~~l~gil~y~~~~lVS~Df~~~~~ssi~D~~~t~~~~~~ 389 (421)
T PLN02272 310 KLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSAS 389 (421)
T ss_pred cEEEEEEEeccCceEEEEEEEEECCCCCHHHHHHHHHHHhccccccccccccCCEeeeecCCCCCcEEEEcccCeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++|+++||||||||||||+||+.+|.+
T Consensus 390 ~vKv~~WYDNEwGys~R~~dl~~~~~~ 416 (421)
T PLN02272 390 FMKLVSWYDNEWGYSNRVLDLIEHMAL 416 (421)
T ss_pred EEEEEEEecCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999865
No 10
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-113 Score=855.63 Aligned_cols=331 Identities=43% Similarity=0.725 Sum_probs=320.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||||||||||.++|+|++++ .+++++|||||+.++++++|||||||+||+|+++++ ++++.|.|+|++|++++++
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~ 80 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVR-QERDQLFVGDDAIRLLHER 80 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEE-ecCCEEEECCEEEEEEEcC
Confidence 69999999999999999999863 246999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC-CCCCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk-d~~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
+|+++||+++|+|+||||||.|.+++++++|+++|||||++|+|++ +..++||||||++.|++.++||||||||||||+
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~~vV~gVN~~~~~~~~~IISnasCTTn~La 160 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCII 160 (336)
T ss_pred CcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCCeEEeCcCHHHhCcCCCEEECCchHHHHHH
Confidence 9999999999999999999999999999999999999999999986 434699999999999987899999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccC
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~g 306 (416)
|++|+||++| ||++++|||||+||++|+++|.+|+|+||+|++++||||++||++++++||||+|+|
T Consensus 161 p~lk~L~~~f-------------gI~~~~mTT~ha~t~~Q~~vD~~~~d~rr~r~~a~NiIP~~tgaa~a~~kilP~l~g 227 (336)
T PRK13535 161 PVIKLLDDAF-------------GIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFND 227 (336)
T ss_pred HHHHHHHHhc-------------CeeEEEEEEEEhhcCCcchhhchhhccccccEeeeccccCccHHHhhhhhcccCCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCc
Q 014890 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDD 386 (416)
Q Consensus 307 kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~ 386 (416)
|++++||||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++++++
T Consensus 228 kv~~~avRVPv~~gs~~dl~v~~~~~~t~eei~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~ 307 (336)
T PRK13535 228 RFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAH 307 (336)
T ss_pred cEEEEEEEeCccCcEEEEEEEEECCCCCHHHHHHHHHHhhhccccccccccCCCccccccCCCCcceEEEcccCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 387 MVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 387 ~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++|+++||||||||||||+||+.+|..
T Consensus 308 ~~k~~~WyDNE~gys~r~~d~~~~~~~ 334 (336)
T PRK13535 308 LIKTLVWCDNEWGFANRMLDTTLAMAA 334 (336)
T ss_pred EEEEEEEEcCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 11
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.6e-113 Score=855.67 Aligned_cols=329 Identities=27% Similarity=0.470 Sum_probs=315.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCC-CceeeecCCeEEECC-EEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE-ADVKPVGTDGISVDG-KVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~-~~v~~~~~~~i~v~G-~~I~v 143 (416)
|++||||||||||||+++|++++++ ++||||||| +.++++++|||||||+||+|+ ++|+ .+++.|.+|| ++|++
T Consensus 1 m~~kv~INGfGRIGR~v~R~~~~~~--~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~-~~~~~l~i~g~~~i~~ 77 (342)
T PTZ00353 1 LPITVGINGFGPVGKAVLFASLTDP--LVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIR-VVGEQIVLNGTQKIRV 77 (342)
T ss_pred CCeEEEEECCChHHHHHHHHHHhcC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEE-EcCCEEecCCCeEEEE
Confidence 5689999999999999999998864 499999999 689999999999999999996 6898 8899999999 89999
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
+++++|+++||+++|+|+||||||.|.+++.+..|+++|||||||++|+++ +||||||||++.|+++++||||||||||
T Consensus 78 ~~~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~d-~p~vV~gVN~~~~~~~~~IISnaSCTTn 156 (342)
T PTZ00353 78 SAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSAD-APTVMAGSNDERLSASLPVCCAGAPIAV 156 (342)
T ss_pred EecCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCCC-CCeEEecCChHHcCCCCCEEECCCHHHH
Confidence 999999999999999999999999999999999999999999999999975 8999999999999987889999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhcc-c--hhHHHhhhccccccccCCCChHHHHHHH
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-S--HRDLRRARAAALNIVPTSTGAAKAVALV 300 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~-~--~~d~rr~Raaa~NIIPt~tGaakav~kV 300 (416)
||+|++|+||++| ||++++|||||+|+ +|...|. + |+|+||+|+|++||||++||++++++||
T Consensus 157 ~LapvlkvL~~~f-------------GI~~g~mTTvHs~q-~~~~~d~~~~~~~d~rr~RaA~~nIiPtstgaakav~kV 222 (342)
T PTZ00353 157 ALAPVIRALHEVY-------------GVEECSYTAIHGMQ-PQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKL 222 (342)
T ss_pred HHHHHHHHHHHhc-------------CeeEEEeeeeeecc-eeecCCCcccccccccccchHHhCCcccCCcchhhhhhh
Confidence 9999999999999 99999999999997 6888876 3 5999999999999999999999999999
Q ss_pred cccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCC
Q 014890 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLT 380 (416)
Q Consensus 301 lPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t 380 (416)
||+|+|||+|+|+||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++ |+|||+.+|
T Consensus 223 lP~L~gkl~g~avRVPt~~vs~vdltv~~~k~~t~eein~~l~~aa~~~l~gil~~~~~~~VS~Df~~~~-~si~D~~~t 301 (342)
T PTZ00353 223 LPHLVGRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVDCIPNG-KLCYDATSS 301 (342)
T ss_pred ccccCCcEEEEEEEccccCeEEEEEEEEECCCCCHHHHHHHHHHHhhcccCCeEEecCCCeeeeEeCCCC-CeEEEcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 599999999
Q ss_pred ccc-CCceEEEEEEecCCcchhhhHhHHHHHHhhc
Q 014890 381 LVM-GDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414 (416)
Q Consensus 381 ~v~-~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~ 414 (416)
+++ +++++|+++||||||||||||+||+.+|.+.
T Consensus 302 ~~~~~~~~vKv~~WYDNE~Gys~r~~dl~~~~~~~ 336 (342)
T PTZ00353 302 SSSREGEVHKMVLWFDVECYYAARLLSLVKQLHQI 336 (342)
T ss_pred eEEeCCCEEEEEEEecCchHHHHHHHHHHHHHHhc
Confidence 994 8899999999999999999999999999765
No 12
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=100.00 E-value=1.2e-111 Score=847.31 Aligned_cols=330 Identities=47% Similarity=0.807 Sum_probs=318.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCC-ceeee-cCCeEEECCEEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEA-DVKPV-GTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~-~v~~~-~~~~i~v~G~~I~v 143 (416)
+++||||||||||||..+|.+.+++ ++++||||| ..++++++|||||||+||+|++ +++ . +|+.|.++|++|.+
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~--~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~-~~~g~~l~~~g~~i~v 80 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRD--DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELK-VKDDKTLLFGEKPVTV 80 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCC--CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEE-ECCCCEEEECCEEEEE
Confidence 3589999999999999999998764 599999999 6899999999999999999996 898 5 67889999999999
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchh
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTN 223 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn 223 (416)
++++||+++||+++|+||||||||.|+++++++.|+++|||||+||+|++| +|+||||||++.|+++++||||||||||
T Consensus 81 ~~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~d-vp~iV~gVN~~~~~~~~~IISnasCTTn 159 (338)
T PLN02358 81 FGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD-APMFVVGVNEHEYKSDLDIVSNASCTTN 159 (338)
T ss_pred EEcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCC-CCeEecCcCHHHhCCCCCEEECCCchHH
Confidence 999999999999999999999999999999999999999999999999874 8999999999999887899999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccc-hhHHHhhhccccccccCCCChHHHHHHHcc
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDAS-HRDLRRARAAALNIVPTSTGAAKAVALVLP 302 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~-~~d~rr~Raaa~NIIPt~tGaakav~kVlP 302 (416)
||+|++|+||++| ||+++.|||||+||++|+++|.+ ++|+||+|++++||||++||+++++++|||
T Consensus 160 ~Lap~lk~L~~~f-------------gI~~~~mTTiha~T~~q~l~d~~~~~d~r~~ra~a~NiIP~~tGaaka~~kIlP 226 (338)
T PLN02358 160 CLAPLAKVINDRF-------------GIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLP 226 (338)
T ss_pred HHHHHHHHHHHhc-------------CeeEEEEEEEEeecCcccccCCCCCccccCccccccccccCCcchhhhhhhccc
Confidence 9999999999999 99999999999999999999966 699999999999999999999999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLV 382 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v 382 (416)
+|+|||+|+|+||||++||++||++++++++++||||++|+++++++|||||+|+++|+||+||+|++||+|||+.+|++
T Consensus 227 ~l~gkl~g~avRVPv~~gs~~dl~v~~~~~~t~eev~~~l~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~ 306 (338)
T PLN02358 227 SLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIA 306 (338)
T ss_pred cCCCcEEEEEEEeeEcCeeEEEEEEEECCCCCHHHHHHHHHHHhhccccCcccccCCceeeeecCCCCcceEEEcccCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 383 MGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 383 ~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
++++++|+++||||||||||||+||+.+|.+
T Consensus 307 ~~~~~vk~~~WyDNE~gys~r~~dl~~~~~~ 337 (338)
T PLN02358 307 LSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337 (338)
T ss_pred ecCCEEEEEEEecCchhHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999864
No 13
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6e-112 Score=848.42 Aligned_cols=329 Identities=46% Similarity=0.761 Sum_probs=319.2
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||||||||||.++|++.+++ +++||+||| +.++++++|||||||+||+|+++++ ++|+.|.++|++|++++
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~--~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~-~~g~~l~~~g~~i~v~~ 77 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWP--ELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVT-AEGDAIVINGKRIRTTQ 77 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEE-EcCCEEEECCEEEEEEe
Confidence 5689999999999999999998864 499999999 7899999999999999999999999 89999999999999999
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCC-CCeEecCCcchh
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTN 223 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~-~~IISnaSCTTn 223 (416)
+++|+++||+ |+|+||||||.|.++++|+.|+++|||||++|+|+++ ++||||||||++.|+++ ++||||||||||
T Consensus 78 ~~~~~~~~w~--gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~~d~d~p~vV~gVN~~~~~~~~~~IISnasCtTn 155 (334)
T PRK08955 78 NKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTN 155 (334)
T ss_pred cCChhhCCcc--CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCCCCCCCceEecccCHHHhcccCCCEEECCccHHH
Confidence 9999999997 9999999999999999999999999999999999876 57999999999999984 789999999999
Q ss_pred hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHccc
Q 014890 224 CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPA 303 (416)
Q Consensus 224 ~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPe 303 (416)
||+|++|+||++| ||++++|||||+||++|+++|.+|+|+||+|++++||||++||+++++++|||+
T Consensus 156 ~Lap~lk~L~~~f-------------gI~~~~mTTvha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tGaa~a~~kvlP~ 222 (334)
T PRK08955 156 CLAPVVKVIHEKL-------------GIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPE 222 (334)
T ss_pred HHHHHHHHHHHhc-------------CeeEEEEEEEEeccCccccccCCCcccccchhheeccccccCCCccccceEccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCccc
Q 014890 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM 383 (416)
Q Consensus 304 L~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~ 383 (416)
|+||++|+|+||||++||++||++++++++++||||++|+++++++|||||+|+|+|+||+||+|++||+|||+.+|+++
T Consensus 223 L~gkl~~~avRVPv~~gs~~dl~v~~~~~~s~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~ 302 (334)
T PRK08955 223 LKGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSIDYKTDPRSSIVDALSTMVV 302 (334)
T ss_pred cCCcEEEEEEEeccCCeEEEEEEEEECCCCCHHHHHHHHHHhcCCCcCceeccccCCcccceeCCCCchHheehhcCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCcchhhhHhHHHHHHhh
Q 014890 384 GDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413 (416)
Q Consensus 384 ~~~~vK~~~WyDNE~gys~R~vdl~~~~~~ 413 (416)
+++++|+++||||||||||||+||+.+|..
T Consensus 303 ~~~~~k~~~WyDNE~gys~r~~dl~~~~~~ 332 (334)
T PRK08955 303 NGTQVKLYAWYDNEWGYANRTAELARKVGL 332 (334)
T ss_pred cCCEEEEEEEeCCchhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999864
No 14
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-111 Score=867.46 Aligned_cols=333 Identities=41% Similarity=0.659 Sum_probs=319.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCC--CCceEEEEe----cCCChhHHhhhhccccccccCCCceeeec--CCeEEECCE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKD--SPLEVVAIN----DTGGVKQASHLLKYDSTLGIFEADVKPVG--TDGISVDGK 139 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~--~~~~vVaIN----d~~~~~~~a~LlkyDS~~G~f~~~v~~~~--~~~i~v~G~ 139 (416)
+.||||||||||||+++|+++++.. ++++||||| |+.++++++|||||||+||+|+++++ .+ ++.|.+||+
T Consensus 127 ~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~-~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTIT-VDEENNAIIANGN 205 (477)
T ss_pred CceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceE-eecCCCEEEECCE
Confidence 5699999999999999999987621 359999995 68899999999999999999999998 55 789999999
Q ss_pred EEEEEeccCCCCCCCCCcccc--EEEcCCCCCCCHhhHHHHHH-cCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEe
Q 014890 140 VIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIIS 216 (416)
Q Consensus 140 ~I~v~~~~~p~~i~W~~~gvD--iVie~TG~f~s~~~a~~hl~-aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IIS 216 (416)
.|+++++++|+++||+++|+| +||||||.|.+++.+.+||+ +||||||||||+|+++|+||||||++.|+++++|||
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k~d~p~iV~GVN~~~~~~~~~IIS 285 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVS 285 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCCCCCCeEEcccCHHHhCCCCCEEE
Confidence 999999999999999999999 99999999999999999999 899999999999988899999999999987788999
Q ss_pred cCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHH
Q 014890 217 NASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKA 296 (416)
Q Consensus 217 naSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaaka 296 (416)
|||||||||+|++|+||++| ||+++.|||||+||++|+++|.+|+|+||+|++++||||++||++|+
T Consensus 286 nASCTTN~LaPvlKvL~d~f-------------GI~~g~mTTvHa~T~dQ~lvD~~hkd~RrgRaaa~NIIptsTGAAkA 352 (477)
T PRK08289 286 AASCTTNAITPVLKAVNDKY-------------GIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKA 352 (477)
T ss_pred CCccHHHHHHHHHHHHHHhc-------------CeeEEEEEEEecccCChHHhhhhhhcCcccceeeeeeEecCCChhhh
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc-cccCCCcccccCC-CeeeeccCCCCccee
Q 014890 297 VALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA-DNELKGILSVCDE-PLVSVDFRCSDVSST 374 (416)
Q Consensus 297 v~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa-~~~lkgil~~~~~-p~VS~Df~g~~~S~i 374 (416)
+++|||+|+|||+|+|+||||++||++||++++++++++||||++|++++ +++|+|||+|+++ |+||+||+|++||+|
T Consensus 353 v~kVLP~L~GKltg~avRVPt~nvS~vdLtv~l~k~vt~eevn~~lk~aa~~~~L~gil~yt~~~~lVSsDfig~~~SsI 432 (477)
T PRK08289 353 VAKALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTDSTEVVSSDFVGSRHAGV 432 (477)
T ss_pred hhhcccccCCcEEEEEEEeccccEEEEEEEEEECCCCCHHHHHHHHHHHhhcCCccceeeecccCCeeeeeecCCCchhh
Confidence 99999999999999999999999999999999999999999999999999 5999999999999 799999999999999
Q ss_pred eeCCCCcccCCceEEEEEEecCCcchhhhHhHHHHHHhhcC
Q 014890 375 VDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415 (416)
Q Consensus 375 ~D~~~t~v~~~~~vK~~~WyDNE~gys~R~vdl~~~~~~~~ 415 (416)
||+.+|+++ ++++|+++||||||||||||+||+.+|.+..
T Consensus 433 ~D~~~T~v~-g~~vkv~~WYDNE~GYS~rvvdl~~~~~~~~ 472 (477)
T PRK08289 433 VDSQATIVN-GNRAVLYVWYDNEFGYSCQVVRVMEQMAGVR 472 (477)
T ss_pred eehhccEEc-CCEEEEEEEecCchhHHHHHHHHHHHHHhcc
Confidence 999999999 6899999999999999999999999998753
No 15
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=100.00 E-value=2.2e-111 Score=842.32 Aligned_cols=323 Identities=62% Similarity=0.958 Sum_probs=312.4
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCC-eEEECCE-EEEEEecc
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD-GISVDGK-VIQVVSNR 147 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~-~i~v~G~-~I~v~~~~ 147 (416)
||||||||||||.++|++++++.++++||||||+.++++++|||||||+||+|+++|+ .+++ .|.|+|+ .|.+++++
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-ADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEE-ecCCceEEECCeEEEEEEecC
Confidence 7999999999999999999863235999999999999999999999999999999999 7888 8999999 99999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
+|.++||+++|+||||||||.|+++++|+.|+++|||||++|+|+++++||||||||++.|++.++||||||||||||+|
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~d~~plvV~gVN~~~~~~~~~IISn~sCtTn~Lap 159 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSKGDAPTIVYGVNHDEYDPEERIISNASCTTNCLAP 159 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCCCCCCeecCCCCHHHhCCCCCEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999876689999999999998778899999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||+||++|+++|.+++|+|++|++++||||++||+++++++|||+|+||
T Consensus 160 ~lk~L~~~f-------------gI~~~~~TTiha~t~~q~lld~~~~d~r~~r~~a~NiIP~~tg~ak~~~kvlP~L~gk 226 (327)
T TIGR01534 160 LAKVLDEAF-------------GIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGK 226 (327)
T ss_pred HHHHHHHhc-------------CeeEEEEEEEEeecCccccccCCCCCCcCceEeEeeeeccCCChHHHHhhccccCCCe
Confidence 999999999 9999999999999999999998889999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCccc--CC
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVM--GD 385 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~--~~ 385 (416)
|+++|+||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++ |+
T Consensus 227 v~~~avRVPv~~gs~~dl~v~~~~~~t~eev~~al~~a~~~~l~gil~~~~~~~VS~D~~~~~~s~i~d~~~t~~~~~~~ 306 (327)
T TIGR01534 227 LTGMAIRVPTPNVSLVDLVLNLEKDTTKEEVNAALKEAAEGSLKGVLGYTEDELVSSDFIGSPYSSIVDATATKVTGLGG 306 (327)
T ss_pred EEEEEEEecccCeEEEEEEEEECCCCCHHHHHHHHHhhhhcccCceeeeeCCCeeeeecCCCCcceEEEcccCeEEcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995 48
Q ss_pred ceEEEEEEecCCcchhhhHhH
Q 014890 386 DMVKVIAWYDNEWGYSQRVVD 406 (416)
Q Consensus 386 ~~vK~~~WyDNE~gys~R~vd 406 (416)
+++|+++||||||||||||+|
T Consensus 307 ~~~k~~~WyDNE~gys~r~~d 327 (327)
T TIGR01534 307 SLVKVVAWYDNEWGYSNRVVD 327 (327)
T ss_pred CEEEEEEEeCCCceeeeEccC
Confidence 999999999999999999987
No 16
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=7.9e-109 Score=823.69 Aligned_cols=323 Identities=45% Similarity=0.770 Sum_probs=313.3
Q ss_pred eEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||||||||||||.++|++++++ +++++||+|||+.+.++++|||||||+||+|+++++ ++++.|.|+|+.|+++++++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~-~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVK-VDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEE-EeCCEEEECCeEEEEEEcCC
Confidence 6999999999999999999874 346999999999999999999999999999999999 89999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCC-CCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapsk-d~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
|+++||+++|+|+||||||.|.+++++++|+++|||+|++|+|.+ +..+|||||||++.|++.++||||||||||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~~vV~gVN~~~~~~~~~IISnasCtTn~lap 159 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDATIVYGVNQQDLSAEHTIVSNASCTTNCIVP 159 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCceEEeccCHHHhCCCCCEEeCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999976 3345999999999998778999999999999999
Q ss_pred HHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccccCC
Q 014890 228 FVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307 (416)
Q Consensus 228 ~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gk 307 (416)
++|+||++| ||+++.|||||+||++|+++|.+|+|+||+|+|++||||++||++++++||||+|+||
T Consensus 160 ~lk~L~~~f-------------gI~~~~~tTvha~t~~q~~vD~~~~d~r~~r~a~~NiIP~~t~~a~a~~kilP~L~gk 226 (325)
T TIGR01532 160 LIKLLDDAI-------------GIESGTITTIHSAMNDQQVIDAYHHDLRRTRAASQSIIPVDTKLARGIERLFPEFAGR 226 (325)
T ss_pred HHHHHHHhc-------------CeeEEEEEEEEhhcCCccccccchhhccccchHhhCeeeCCccHHHHHHHhCcccCCe
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCce
Q 014890 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDM 387 (416)
Q Consensus 308 l~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~ 387 (416)
|+|+||||||++||++||++++++++++|||+++|+++++++|||||+|+++|+||+||+|++||+|||+.+|+++++++
T Consensus 227 l~~~avRVPv~~~s~~dl~v~~~~~~~~eev~~~l~~a~~~~l~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~~~~~~~ 306 (325)
T TIGR01532 227 FEAIAVRVPTVNVTALDLSVTTKRDVKANEVNRVLREAAQGPLRGIVDYTELPLVSCDFNHDPHSAIVDGTQTRVSGPRL 306 (325)
T ss_pred EEEEEEEecccCcEEEEEEEEECCCCCHHHHHHHHHHhhccccccccccccCCccccccCCCCcceEEEcccCEEecCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCcchhhhHhH
Q 014890 388 VKVIAWYDNEWGYSQRVVD 406 (416)
Q Consensus 388 vK~~~WyDNE~gys~R~vd 406 (416)
+|+++||||||||||||+|
T Consensus 307 ~k~~~WyDNE~gys~r~~d 325 (325)
T TIGR01532 307 VKLLVWCDNEWGFANRMLD 325 (325)
T ss_pred EEEEEEeCCcceeeeEccC
Confidence 9999999999999999997
No 17
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-85 Score=630.02 Aligned_cols=283 Identities=48% Similarity=0.802 Sum_probs=269.8
Q ss_pred hHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCCCCCCCc
Q 014890 79 IGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL 157 (416)
Q Consensus 79 IGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~i~W~~~ 157 (416)
|||.++ + +.+ ++||+||| ..++++++|+++|||+||+|+++++ .++..+.++|+.|.++++++|.+|+|.+.
T Consensus 1 ig~~~~---~-~~~--v~vv~indpfi~~~~~~y~~kydsthG~f~g~~k-~~~~~~i~~G~~i~~~~~~~p~~i~w~~~ 73 (285)
T KOG0657|consen 1 IGRLVL---Q-RNS--VDVVAINDPFIDLNYLAYMLKYDSTHGKFHGTVK-AENFKLIINGNPITIFQFRDPAKIPWGAK 73 (285)
T ss_pred CCcccc---c-cCC--cccccccCcccccccccccccccccCCcccccee-ecCCceeecCceEEeecccCcccCccccc
Confidence 577777 2 433 99999999 6899999999999999999999999 88998999999999999999999999999
Q ss_pred cccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhh
Q 014890 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFV 237 (416)
Q Consensus 158 gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~ 237 (416)
++|+|+|+||.|.+.+.+..|+++|||||||++|++| .|+||+|||+++|+++..||||+|||||||+|+.|+||++|
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~d-apmfv~gVn~~~y~~~~~iiSnascttnclaPlaKVi~d~f- 151 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSAD-APMFVMGVNGEKYDNSLDIISNASCTTNCLAPLAKVIHDNF- 151 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEeccccCC-CCcccccccccccccccceeechhhhhccccchhheecccc-
Confidence 9999999999999999999999999999999999985 99999999999999887799999999999999999999999
Q ss_pred hhccccccccccceeEEEEEeecccccchhhhcc-chhHHHhhhccccccccCCCChHHHHHHHcccccCCeeeEEEeeC
Q 014890 238 TQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVP 316 (416)
Q Consensus 238 ~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~-~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVP 316 (416)
||.+++|||+|++|++|+.+|. +.++||++|.+.|||||.+||++|+++||||||+||++|||+|||
T Consensus 152 ------------gI~EgLMtTvha~tatQktvdgps~k~wr~g~~a~qNIiPASTgAakAVgKvipeLngKLtGMAf~Vp 219 (285)
T KOG0657|consen 152 ------------GIMEGLMTTVHAITATQKTVDGPSGKLWRDGRRALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVP 219 (285)
T ss_pred ------------ccccccccceeeeccccccccCcccccccccchhhhccccccccHHHHHHHHhHHhhCccccceecCC
Confidence 9999999999999999999995 568999999999999999999999999999999999999999999
Q ss_pred cccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccCCceEEEEEEecC
Q 014890 317 TPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDN 396 (416)
Q Consensus 317 t~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~~~~vK~~~WyDN 396 (416)
|+ +|++||+++++++.++|+++++++++++++||||| ||+ +| ++||||
T Consensus 220 t~-vsVvdl~~~~~k~a~~ddikkvvk~~~~~~lkGIL--te~--------------------------~f---ISWYDN 267 (285)
T KOG0657|consen 220 TP-VSVVDLTCHLEKPAKYDDIKKVVKLASEIPLKGIL--TEH--------------------------HF---ISWYDN 267 (285)
T ss_pred cc-eEeeeeecccccccchHHHHHHHHHhhcccccccc--ccc--------------------------ce---eeeecc
Confidence 99 99999999999999999999999999999999999 777 23 899999
Q ss_pred CcchhhhHhHHHHHHhhc
Q 014890 397 EWGYSQRVVDLADIVANN 414 (416)
Q Consensus 397 E~gys~R~vdl~~~~~~~ 414 (416)
|||||+||+||+.||+++
T Consensus 268 E~GYS~rVvDl~~h~ask 285 (285)
T KOG0657|consen 268 EFGYSNRVVDLMEHMASK 285 (285)
T ss_pred ccccchHHHHHHHHHhcC
Confidence 999999999999999875
No 18
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=100.00 E-value=2.7e-58 Score=461.14 Aligned_cols=235 Identities=19% Similarity=0.265 Sum_probs=211.3
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChh---HHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVK---QASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~---~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||||||||||+++|++.+++ +++|||||| .+++ +++|+++|||.|+.+...++ .+++.+.++|+
T Consensus 1 VaInG~GrIGr~varav~~~~--d~elVaVnD-~~~~~~a~lA~~lgyds~~~~~~~~~~-~~~~~l~v~g~-------- 68 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQD--DMKLVGVTK-TSPDFEAYRAKELGIPVYAASEEFIPR-FEEAGIEVAGT-------- 68 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCC--CcEEEEEec-CChHHHHHHHHHhCCCEEeecCCcceE-eccCceEecCC--------
Confidence 699999999999999998764 599999999 5777 78888899999954444666 67777887775
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccCCCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~y~~~~~IISnaSCTTn~La 226 (416)
++++. .++|+|+||||.|...+.++.|+++|+|+|++++|+++. +++||+|+|++.|.+.+ ||||+|||||||+
T Consensus 69 -~eeLl---~~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~-~vs~aSCtTn~La 143 (333)
T TIGR01546 69 -LEDLL---EKVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD-YVRVVSCNTTGLV 143 (333)
T ss_pred -HHHHh---hcCCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc-eEEecCchHhhHH
Confidence 44443 379999999999999999999999999999999998863 68999999999998655 9999999999999
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccC-CC---ChHHHHHHHcc
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPT-ST---GAAKAVALVLP 302 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt-~t---Gaakav~kVlP 302 (416)
|++|+||++| ||+++.|||+|+ |+||+ |+|||| ++||||+ +| ++++++.+|||
T Consensus 144 p~~~~L~~~f-------------GI~~~~~Ttvh~-t~dq~-------d~rrgr--~~~IiP~~~t~ps~~a~av~~VlP 200 (333)
T TIGR01546 144 RTLNAINDYS-------------KVDKVRAVMVRR-AADPN-------DVKKGP--INAIVPDPVTVPSHHGPDVQTVIP 200 (333)
T ss_pred HHHHHHHHhc-------------CeEEEEEEEEee-cCChh-------hhccCc--hhceEeCCCCCCCchHHHHHHcCC
Confidence 9999999999 999999999996 99994 899999 6999999 45 77999999999
Q ss_pred cccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 303 eL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
+|+ |+|+|+||||+++|++||++++++++++||||++|+++++
T Consensus 201 ~L~--i~g~AvrVPt~~vs~~dl~v~l~~~~t~eeV~~~l~~~~r 243 (333)
T TIGR01546 201 NLN--IETMAFVVPTTLMHVHSIMVELKKPVTKDDIIDILENTPR 243 (333)
T ss_pred CCC--ccEEEEEeCCCCcEEEEEEEEECCCCCHHHHHHHHHhCCc
Confidence 997 9999999999999999999999999999999999999875
No 19
>PF02800 Gp_dh_C: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; InterPro: IPR020829 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the C-terminal domain which is a mixed alpha/antiparallel beta fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1DSS_R 1IHY_C 1CRW_R 1IHX_B 1SZJ_R 3HJA_D 2YYY_B 1OBF_O 3PYM_A 2VYN_D ....
Probab=100.00 E-value=8e-52 Score=375.30 Aligned_cols=157 Identities=56% Similarity=0.868 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCChHHHHHHHcccc
Q 014890 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304 (416)
Q Consensus 225 Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tGaakav~kVlPeL 304 (416)
|+|++|+||++| ||+++.|||+|+||++|+++|.+|+||||+|++++||||++||++|++++|||+|
T Consensus 1 Lap~~k~l~~~f-------------gI~~~~~Ttih~~t~~Q~~~D~~~~d~rrgr~a~~niip~~t~aa~av~~VlP~L 67 (157)
T PF02800_consen 1 LAPVLKVLDDNF-------------GIEKGRMTTIHAYTDPQKLVDGPHKDWRRGRAAAQNIIPTSTGAAKAVGKVLPEL 67 (157)
T ss_dssp HHHHHHHHHHHH-------------EEEEEEEEEEEESSTTSBSSSS--SSTGTTSBTTTSSEEEEESHHHHHHHHSGGG
T ss_pred Ccchhhhhhhhc-------------CEEEEEEEEEeccCCccceeeeccccccccccccccccccccccchhhhhhhhhc
Confidence 799999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCCeeeeccCCCCcceeeeCCCCcccC
Q 014890 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG 384 (416)
Q Consensus 305 ~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p~VS~Df~g~~~S~i~D~~~t~v~~ 384 (416)
+|||+|+|+||||+++|++||+++++|++++||||++|+++++++++||++|+++|+||+||+|+++|+|||..+|++++
T Consensus 68 ~gki~g~a~rVPt~~~s~~dl~~~l~k~~t~eeV~~~~~~aa~~~~~gil~~~~~~~vS~D~~~~~~s~i~d~~~t~v~~ 147 (157)
T PF02800_consen 68 NGKITGMAVRVPTPNVSLHDLTVELEKPVTKEEVNEALKQAARGPLKGILGYTEDPLVSSDFNGDRHSSIFDAEATIVVN 147 (157)
T ss_dssp TTTEEEEEEEESSSSEEEEEEEEEESSSS-HHHHHHHHHHHHHTTTTTTEEEEHSHHHGGGGTTGCSSEEEEGGGEEEEE
T ss_pred cCcceeeEEeeeecccCceEEEEecccchhhhhhhhhhhhhhHhhhhhhheecccceEEeccCCCceEEEEEhHHCeEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEe
Q 014890 385 DDMVKVIAWY 394 (416)
Q Consensus 385 ~~~vK~~~Wy 394 (416)
++++|+++||
T Consensus 148 ~~~vkl~~WY 157 (157)
T PF02800_consen 148 GNLVKLFAWY 157 (157)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEC
Confidence 9999999999
No 20
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=100.00 E-value=1.3e-50 Score=365.76 Aligned_cols=149 Identities=55% Similarity=0.907 Sum_probs=140.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC-ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||||||||||||+++|+++.++ +|+||||||+. ++++++|||||||+||+|+++++ .+++.|.++|++|++++++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~--~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~-~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQP--DIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVE-VDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTST--TEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEE-EETTEEEETTEEEEEEHTS
T ss_pred CEEEEECCCcccHHHHHhhcccc--eEEEEEEecccccchhhhhhhhccccccceecccc-cccceeEeecccccchhhh
Confidence 69999999999999999999765 59999999987 99999999999999999999999 8999999999999999999
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccCCCCCCCeEecCCc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASC 220 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~y~~~~~IISnaSC 220 (416)
+|+++||+++|||||+||||.|.+++.++.|+++||||||+|+|++++ +||||+|||++.|+++++|||++||
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~GvN~~~~~~~~~iIS~aSC 151 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVMGVNHDDYDPEHHIISNASC 151 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TTTSGGGGTTTTSEEEE--H
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccccccCCeEEeeccHHHhCCCCCEEEccCC
Confidence 999999999999999999999999999999999999999999999986 9999999999999998899999999
No 21
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.4e-49 Score=394.03 Aligned_cols=237 Identities=23% Similarity=0.321 Sum_probs=199.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc---cccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK---YDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk---yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
++||||||||||||.++|++.+++ +++||+|+|. ++++.+||++ || .||+++..++..++..+.+.+.
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~--d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~~~~~~~i~V~~~----- 71 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQP--DMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREKAFEEAGIPVAGT----- 71 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCC--CcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccccccCCceEEcCC-----
Confidence 479999999999999999998764 5999999996 6899999988 44 5666665443223334444432
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCC--CeEEeecCccCCCCCCCeEecCCcch
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI--PTYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~--ptvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
+.++. .++|+||||||.+.+.+.++.|+++| ++||+++|+++++ .+||+|||++.|.+. +||+|+||||
T Consensus 72 ----~~el~---~~vDVVIdaT~~~~~~e~a~~~~~aG-k~VI~~~~~~~~~~~~~~v~~vN~~~~~~~-~~v~~~sCtT 142 (341)
T PRK04207 72 ----IEDLL---EKADIVVDATPGGVGAKNKELYEKAG-VKAIFQGGEKAEVAGVSFNALANYEEALGK-DYVRVVSCNT 142 (341)
T ss_pred ----hhHhh---ccCCEEEECCCchhhHHHHHHHHHCC-CEEEEcCCCCCCCCCCcEEeeECHHHhCCC-CcEEccChHH
Confidence 33331 37999999999999999999999999 7899999986554 358999999998753 4999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCC----CChHHHHH
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTS----TGAAKAVA 298 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~----tGaakav~ 298 (416)
|||+|+||+||++| ||+++.|||||++|+ + +|+| |++++||+|.+ ++.++++.
T Consensus 143 ~~l~~~l~~L~~~f-------------gI~~~~vTtv~a~td------~--~~~~--r~~~~niip~p~~~~~~~g~~v~ 199 (341)
T PRK04207 143 TGLCRTLCALDRAF-------------GVKKVRATLVRRAAD------P--KEVK--RGPINAIVPDPVTVPSHHGPDVK 199 (341)
T ss_pred HHHHHHHHHHHHhc-------------CceEEEEEEEEcCCC------c--chhh--HHHhcCcCCCCCCCCCCchhHHH
Confidence 99999999999999 999999999999884 2 3554 78999999862 45578999
Q ss_pred HHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 299 LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 299 kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
+|+|+|+ |+++|+||||+++|+++++++|++++++|||+++|++++.
T Consensus 200 ~vlp~l~--i~~~avrVPv~~gh~~~v~v~l~~~~t~eev~~~l~~~~~ 246 (341)
T PRK04207 200 TVLPDLD--ITTMAVKVPTTLMHMHSVNVELKKPVTKEEVLEALENTPR 246 (341)
T ss_pred hhCCCCc--eEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHhCCC
Confidence 9999996 9999999999999999999999999999999999999874
No 22
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=100.00 E-value=1.5e-45 Score=331.67 Aligned_cols=149 Identities=54% Similarity=0.905 Sum_probs=142.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||||||||||||.++|++.+++ ++++|+|||+.++++++|||+|||+||+|+.+++ .+++.|.++|+.|+++++++
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~--~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~-~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERP--DIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVE-VDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEE-EeCCEEEECCEEEEEEecCC
Confidence 58999999999999999988754 5999999998899999999999999999999998 88999999999999999999
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCc
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSC 220 (416)
|.++||+++|+||||||||.|.+++.++.|+++||||||||+|++++++|||+|||++.|+++++||||+||
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~~~~~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDEYDPEDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHHcCCCCCEEEcCCC
Confidence 999999999999999999999999999999999999999999998766799999999999988789999999
No 23
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-38 Score=316.50 Aligned_cols=233 Identities=16% Similarity=0.218 Sum_probs=199.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+++||| | +|.+||.++++|.+|+ |+ +.++ +|| +|. .+ +.++.+.|+|+++.|..
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~---fp---v~~l-------~l~--~s~-------~~-s~gk~i~f~g~~~~V~~- 57 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSD---LE---IEQI-------SIV--EIE-------PF-GEEQGIRFNNKAVEQIA- 57 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcC---Cc---hhhe-------eec--ccc-------cc-cCCCEEEECCEEEEEEE-
Confidence 579999 9 8999999999999986 77 3544 565 442 12 57899999999999964
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---C-CCCCeEEeecCccCCCC--CCCeEecCCc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKP--DEPIISNASC 220 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---k-d~~ptvV~gVN~~~y~~--~~~IISnaSC 220 (416)
.++..|+ ++|+||+ +|...++++++...++|+ ++||+++ + +|+|++||+||++.+.. .++||+||+|
T Consensus 58 --l~~~~f~--~vDia~f-ag~~~s~~~ap~a~~aG~--~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~~~~IIanPNC 130 (322)
T PRK06901 58 --PEEVEWA--DFNYVFF-AGKMAQAEHLAQAAEAGC--IVIDLYGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDP 130 (322)
T ss_pred --CCccCcc--cCCEEEE-cCHHHHHHHHHHHHHCCC--EEEECChHhhCCCCCCeecccCCHHHHhcCcCCCEEECCcH
Confidence 3444563 8999999 999999999999999999 9999987 3 48999999999998765 3589999999
Q ss_pred chhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH----------hhhccccccccC
Q 014890 221 TTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR----------RARAAALNIVPT 289 (416)
Q Consensus 221 TTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r----------r~Raaa~NIIPt 289 (416)
||.+|++.|++||+.| ||++..+|||||+||. ++.+|..+...+ ..+.+|+|+||+
T Consensus 131 sTi~l~~aL~pL~~~~-------------~l~rv~VsTyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~~~iAFNviP~ 197 (322)
T PRK06901 131 QVSQLALALAPFLQEQ-------------PLSQIFVTSLLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPA 197 (322)
T ss_pred HHHHHHHHHHHHHHhc-------------CCcEEEEEeecchhhcCHhHHHHHHHHHHHHhCCCCCCCCceeeecccccc
Confidence 9999999999999999 9999999999999999 777775432111 236799999999
Q ss_pred C-CChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 290 S-TGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 290 ~-tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
. .|-..+.+|+||+| .+++++|+||||.++|.+.++++++++++.||++++|++++
T Consensus 198 ig~~m~~EtrKIl~~l-~~VsaTcVRVPV~~GHs~sV~ve~e~~~~~e~~~~~l~~~~ 254 (322)
T PRK06901 198 NAQNLELQLQKIFPQL-ENVTFHSIQVPVFYGLAQMVTALSEYELDIESQLAEWQQNN 254 (322)
T ss_pred CCccHHHHHHHHhCCc-ccEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHhCC
Confidence 8 46778889999988 25999999999999999999999999999999999999876
No 24
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-37 Score=311.59 Aligned_cols=231 Identities=25% Similarity=0.380 Sum_probs=194.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||+|.| .|.+|+.++|.|.+++.+.++++++... + ..+..+.++|..+.+.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~-----------------------~-~~g~~l~~~g~~i~v~--- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA-----------------------R-SAGKELSFKGKELKVE--- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc-----------------------c-cCCCeeeeCCceeEEe---
Confidence 6999999 9999999999998865455777776421 0 2344455666666664
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---C-CCCCeEEeecCccCCCCC--CCeEecCCcc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKPD--EPIISNASCT 221 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---k-d~~ptvV~gVN~~~y~~~--~~IISnaSCT 221 (416)
++...+|. ++|+||+|+|.+.+++++++|+++|+ +||+.++ . +++|++++|||++.++.. ++|||||+|+
T Consensus 55 d~~~~~~~--~vDvVf~A~g~g~s~~~~~~~~~~G~--~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~~~~iVanp~C~ 130 (334)
T PRK14874 55 DLTTFDFS--GVDIALFSAGGSVSKKYAPKAAAAGA--VVIDNSSAFRMDPDVPLVVPEVNPEALAEHRKKGIIANPNCS 130 (334)
T ss_pred eCCHHHHc--CCCEEEECCChHHHHHHHHHHHhCCC--EEEECCchhhcCCCCCeEcCCcCHHHHhhhhcCCeEECccHH
Confidence 34445674 89999999999999999999999999 8897665 2 358999999999998764 4799999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeeccccc------------chhhhccc---hhHHHhhhcccccc
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTG------------DQRLLDAS---HRDLRRARAAALNI 286 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~------------~Q~~lD~~---~~d~rr~Raaa~NI 286 (416)
|+|++|.|++|+++| +|+++.|||+|++|| +|+.+|.+ ++++|++|++++|+
T Consensus 131 ~t~~~l~l~pL~~~~-------------~i~~i~vtt~~~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ni 197 (334)
T PRK14874 131 TIQMVVALKPLHDAA-------------GIKRVVVSTYQAVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNV 197 (334)
T ss_pred HHHHHHHHHHHHHhc-------------CceEEEEEEEechhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcc
Confidence 999999999999999 999999999999996 56777744 46888999999999
Q ss_pred ccCC-----CChHHH-------HHHHc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 287 VPTS-----TGAAKA-------VALVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 287 IPt~-----tGaaka-------v~kVl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
+|+. +|++++ +.+++ |++ +++++++|||+++||+.+++++++++++.+||+++|+++
T Consensus 198 ip~~~~~~~~gh~~eE~ki~~el~~il~~~~~--~v~~t~~rvPv~~G~~~ti~v~~~~~~~~~~v~~~l~~~ 268 (334)
T PRK14874 198 IPHIDVFMDDGYTKEEMKMVNETKKILGDPDL--KVSATCVRVPVFTGHSESVNIEFEEPISVEEAREILAEA 268 (334)
T ss_pred cCcCCccccCCCcHHHHHHHHHHHHHhCCCCC--eEEEEEEEcceeccEEEEEEEEECCCCCHHHHHHHHHcC
Confidence 9997 788877 35666 888 599999999999999999999999999999999999984
No 25
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=7.4e-37 Score=307.07 Aligned_cols=233 Identities=23% Similarity=0.324 Sum_probs=191.3
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||+|.| .|.+|+.++|.|.+++.+.++++.+. |. + ..+..+.+.|+.+.+... +
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~a---------------s~--------~-~~g~~~~~~~~~~~~~~~-~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLA---------------SD--------R-SAGRKVTFKGKELEVNEA-K 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEe---------------cc--------c-cCCCeeeeCCeeEEEEeC-C
Confidence 699999 99999999999987643334443321 10 1 345556666755555332 2
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---C-CCCCeEEeecCccCCCCC--CCeEecCCcch
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---K-GDIPTYVVGVNADAYKPD--EPIISNASCTT 222 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---k-d~~ptvV~gVN~~~y~~~--~~IISnaSCTT 222 (416)
+. .| .++|+||+|+|.+.+++.+++|+++|+ +||+.++ . +++|++|||||++.+++. ++|||||+|+|
T Consensus 56 ~~--~~--~~~D~v~~a~g~~~s~~~a~~~~~~G~--~VID~ss~~R~~~~~p~~vpevN~~~i~~~~~~~iianp~C~~ 129 (339)
T TIGR01296 56 IE--SF--EGIDIALFSAGGSVSKEFAPKAAKCGA--IVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCST 129 (339)
T ss_pred hH--Hh--cCCCEEEECCCHHHHHHHHHHHHHCCC--EEEECCHHHhCCCCCCEEeCCcCHHHHhhCccCCEEECCCcHH
Confidence 22 23 489999999999999999999999999 6897775 3 368999999999988763 56999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc------------hhhhccchhH--------HHhhhcc
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD------------QRLLDASHRD--------LRRARAA 282 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~------------Q~~lD~~~~d--------~rr~Raa 282 (416)
+|++|.|++|+++| +|+++.|||+|++||+ |++++..++| .+++|++
T Consensus 130 t~~~l~l~pL~~~~-------------~i~~i~vtt~~~vSgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~ 196 (339)
T TIGR01296 130 IQMVVVLKPLHDEA-------------KIKRVVVSTYQAVSGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQI 196 (339)
T ss_pred HHHHHHHHHHHHhc-------------CccEEEEEeeechhhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcc
Confidence 99999999999999 9999999999999997 4445544444 7889999
Q ss_pred ccccccCC-----CChHHHHHHHccccc-------CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 283 ALNIVPTS-----TGAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 283 a~NIIPt~-----tGaakav~kVlPeL~-------gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
++||||+. +|+++++.|+.|||+ .+++++++|||+++||+.+++++++++++.||++++|++++
T Consensus 197 ~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~t~~rVPv~~G~~~~v~v~~~~~v~~~~i~~~l~~~~ 272 (339)
T TIGR01296 197 AFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSATCVRVPVFTGHSESVNIEFEKEISPEDVRELLKNAP 272 (339)
T ss_pred cccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEEEeEEccccccEEEEEEEEECCCCCHHHHHHHHhcCC
Confidence 99999995 799999999999986 36999999999999999999999999999999999999653
No 26
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=5.8e-35 Score=295.94 Aligned_cols=235 Identities=16% Similarity=0.194 Sum_probs=190.0
Q ss_pred eeEEEEc-cChhHHHHHHHHH-hCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~-~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+||||+| +|.+||.++++|. +++ |++ ..+ ++| .|. + +++..+.++|+.+.|...
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~---fp~---~~~-------~~~--ss~--------~-s~g~~~~f~~~~~~v~~~ 56 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD---FDA---IRP-------VFF--STS--------Q-LGQAAPSFGGTTGTLQDA 56 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC---Ccc---ccE-------EEE--Ech--------h-hCCCcCCCCCCcceEEcC
Confidence 4899999 9999999999998 553 763 211 333 331 2 577888899988766542
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC--CCe--EecC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--EPI--ISNA 218 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~--~~I--ISna 218 (416)
.+.+ .| .++|+||+|.|...+++++++..++|...++||+++ ++|+|++||+||++.+... ++| |+||
T Consensus 57 ~~~~--~~--~~vDivffa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~~~gi~~ianP 132 (366)
T TIGR01745 57 FDID--AL--KALDIIITCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGLNNGIRTFVGG 132 (366)
T ss_pred cccc--cc--cCCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHHhCCcCeEECc
Confidence 2211 34 489999999999999999999999995448999987 3489999999999977653 567 8999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH--------------------
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR-------------------- 277 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r-------------------- 277 (416)
+|||++|++.|++||+.| ||+++.+|||||+||. ++.+|+.....+
T Consensus 133 NCst~~l~~aL~pL~~~~-------------~i~~v~VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~ 199 (366)
T TIGR01745 133 NCTVSLMLMSLGGLFAND-------------LVEWVSVATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDI 199 (366)
T ss_pred CHHHHHHHHHHHHHHhcc-------------CccEEEEEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhh
Confidence 999999999999999999 9999999999999999 667764332211
Q ss_pred -----------------hhhccccccccCC-----CChHHHHH-------HHc---ccccCCeeeEEEeeCcccceEEEE
Q 014890 278 -----------------RARAAALNIVPTS-----TGAAKAVA-------LVL---PALKGKLNGIALRVPTPNVSVVDL 325 (416)
Q Consensus 278 -----------------r~Raaa~NIIPt~-----tGaakav~-------kVl---PeL~gkl~g~avRVPt~~vs~vdl 325 (416)
..+.+|+|+||+. +|+++++. |+| |+| +++++|+||||.++|...+
T Consensus 200 ~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g~t~EE~K~~~EtrKILg~~~~l--~VsaTcVRVPV~~gHs~sv 277 (366)
T TIGR01745 200 ERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILGTSSTI--PVDGLCVRIGALRCHSQAF 277 (366)
T ss_pred ccccccccccCCCCcccCCCcccccccCcCCCccCCCCcHHHHHHHHHHHHHhCCCCCC--cEEEEEEecceeccEEEEE
Confidence 1356789999997 48877775 455 566 5999999999999999999
Q ss_pred EEEEccCCCHHHHHHHHHhcc
Q 014890 326 VVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 326 ~v~l~k~vs~eeV~~a~~~aa 346 (416)
+++++++++.||++++|+++.
T Consensus 278 ~ve~~~~vs~e~i~~~L~~~~ 298 (366)
T TIGR01745 278 TIKLKKDVSLETIEEIIRAHN 298 (366)
T ss_pred EEEECCCCCHHHHHHHHHhCC
Confidence 999999999999999999854
No 27
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-33 Score=280.69 Aligned_cols=296 Identities=25% Similarity=0.295 Sum_probs=214.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCe-EEECCEEEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~-i~v~G~~I~v~~ 145 (416)
++||||.| +|.+|+.+++.|.+++ .+++.+ ++| .|. + +.|.. +.+.|+.+.+..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~-f~~~~~------------~~~--AS~--------r-SaG~~~~~f~~~~~~v~~ 56 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERH-FPFEEL------------VLL--ASA--------R-SAGKKYIEFGGKSIGVPE 56 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcC-CCcceE------------EEE--ecc--------c-ccCCccccccCccccCcc
Confidence 37999999 9999999999999974 233321 333 332 2 45555 889888766643
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC--CC-eEecC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--EP-IISNA 218 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~--~~-IISna 218 (416)
. -.+...|. ++||||.|.|...+++++++..++|+ ++||+.| .+|+|++|++||++.+... .+ ||+||
T Consensus 57 ~-~~~~~~~~--~~Divf~~ag~~~s~~~~p~~~~~G~--~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~Iianp 131 (334)
T COG0136 57 D-AADEFVFS--DVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANP 131 (334)
T ss_pred c-cccccccc--cCCEEEEeCchHHHHHHHHHHHHcCC--EEEeCCcccccCCCCCEecCCcCHHHHHhhhhCCCEEECC
Confidence 1 14445565 89999999999999999999999998 9999987 3489999999999976543 35 99999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH----------hhhccccccc
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR----------RARAAALNIV 287 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r----------r~Raaa~NII 287 (416)
+|||.+|++.||+|+++| ||++..+|||||+||. .+.+++.....+ .++.+|+|+|
T Consensus 132 NCst~~l~~aL~PL~~~~-------------~i~~v~VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNvi 198 (334)
T COG0136 132 NCSTIQLVLALKPLHDAF-------------GIKRVVVSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVI 198 (334)
T ss_pred ChHHHHHHHHHHHHHhhc-------------CceEEEEEEeehhhhcCccchhhHHHHHhhhccCccccccccccccccc
Confidence 999999999999999999 9999999999999998 435554322111 1578999999
Q ss_pred cCCC-----ChHHHHHH-------HcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCccc
Q 014890 288 PTST-----GAAKAVAL-------VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 355 (416)
Q Consensus 288 Pt~t-----Gaakav~k-------VlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~ 355 (416)
|+.. |++|+++| ||.+-.-+++++|+||||..||+..++++++++++.+|+.+.+-..+.+ .-+..
T Consensus 199 P~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GHse~v~ve~~~~~~~~e~~~~~l~~ap~--v~v~~ 276 (334)
T COG0136 199 PHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGHSEAVTVEFKKDVDPEEIREELLPSAPG--VVVVD 276 (334)
T ss_pred ccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceecccceEEEEEecCCCCHHHHHHHHhccCCC--cEEEe
Confidence 9984 58877765 5554455799999999999999999999999999999999665333322 22222
Q ss_pred cc-CCCeeeeccCCCCcceeeeCCCCc-ccCCceEEEEEEecC-CcchhhhHhHHHH
Q 014890 356 VC-DEPLVSVDFRCSDVSSTVDSSLTL-VMGDDMVKVIAWYDN-EWGYSQRVVDLAD 409 (416)
Q Consensus 356 ~~-~~p~VS~Df~g~~~S~i~D~~~t~-v~~~~~vK~~~WyDN-E~gys~R~vdl~~ 409 (416)
-. +.|+.-.|-.|... ++=+..-. .+.++.+++..==|| -||=|--.+-+++
T Consensus 277 ~~~~~P~~~~d~~g~~~--v~VGRiR~d~~~~~~l~~~~v~dNl~~GAA~~av~iaE 331 (334)
T COG0136 277 NPEDRPQTPLDATGGDE--VSVGRIRKDLSGPEGLKLWVVGDNLRKGAALNAVLIAE 331 (334)
T ss_pred CCccCccChhhhcCCCc--eEEeEeeecCCCCCcEEEEEEechhhhhhHHHHHHHHH
Confidence 22 35666667677652 22222211 123344665555677 3564444444443
No 28
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-32 Score=275.52 Aligned_cols=294 Identities=18% Similarity=0.299 Sum_probs=216.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
.+||||.| +|-+|+.++|+|.+.+ +|++ .++ +++ .|. + +.|+.+.+.|+.+.+...
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~--~f~v---~~l-------~~~--aS~--------~-saGk~~~~~~~~l~v~~~ 61 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKET--KFNI---AEV-------TLL--SSK--------R-SAGKTVQFKGREIIIQEA 61 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCC--CCCc---ccE-------EEE--ECc--------c-cCCCCeeeCCcceEEEeC
Confidence 47999999 8999999999998543 3774 111 222 331 2 567888888887777543
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCCCCeEecCCcch
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPDEPIISNASCTT 222 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~~~IISnaSCTT 222 (416)
++.. | .++|+||.|+|...+++++++..++|+ +||+.++ ++++|+++|+||.+.++...+||+||+|+|
T Consensus 62 -~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~~G~--~VID~Ss~fR~~~~vplvvPEvN~e~i~~~~~iIanPnC~t 134 (347)
T PRK06728 62 -KINS--F--EGVDIAFFSAGGEVSRQFVNQAVSSGA--IVIDNTSEYRMAHDVPLVVPEVNAHTLKEHKGIIAVPNCSA 134 (347)
T ss_pred -CHHH--h--cCCCEEEECCChHHHHHHHHHHHHCCC--EEEECchhhcCCCCCCeEeCCcCHHHHhccCCEEECCCCHH
Confidence 4543 4 379999999999999999999999998 8999886 347999999999998876457999999999
Q ss_pred hhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH------------hh-------hcc
Q 014890 223 NCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR------------RA-------RAA 282 (416)
Q Consensus 223 n~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r------------r~-------Raa 282 (416)
++++..|++|+++| +|+++.++|+|++||. ...++..++..+ .. +.+
T Consensus 135 t~~~laL~PL~~~~-------------~i~~v~V~t~qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~i 201 (347)
T PRK06728 135 LQMVTALQPIRKVF-------------GLERIIVSTYQAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPI 201 (347)
T ss_pred HHHHHHHHHHHHcC-------------CccEEEEEEeecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCce
Confidence 99999999999999 9999999999999999 677775332222 12 778
Q ss_pred ccccccCC-----CChHHHHH-------HHc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc
Q 014890 283 ALNIVPTS-----TGAAKAVA-------LVL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348 (416)
Q Consensus 283 a~NIIPt~-----tGaakav~-------kVl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~ 348 (416)
++|+||+. .|+++++. ||| |+| +++++|+||||+++|...++++|+++++.|+++++|++++
T Consensus 202 afNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l--~VsatcvRVPV~~gHs~sv~ve~~~~~~~~~~~~~l~~~~-- 277 (347)
T PRK06728 202 AFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNL--KMAATCVRVPVISGHSESVYIELEKEATVAEIKEVLFDAP-- 277 (347)
T ss_pred eccccCcCCccccCCccHHHHHHHHHHHHHhCCCCC--cEEEEEEecceeccEEEEEEEEECCCCCHHHHHHHHHcCC--
Confidence 99999997 57776665 556 666 5999999999999999999999999999999999998763
Q ss_pred cCCCcccccCCCe-----eeeccCCCCcceeeeCCCCccc-CCceEEEEEEecCC-cchhhhHhHHHHHHhhc
Q 014890 349 ELKGILSVCDEPL-----VSVDFRCSDVSSTVDSSLTLVM-GDDMVKVIAWYDNE-WGYSQRVVDLADIVANN 414 (416)
Q Consensus 349 ~lkgil~~~~~p~-----VS~Df~g~~~S~i~D~~~t~v~-~~~~vK~~~WyDNE-~gys~R~vdl~~~~~~~ 414 (416)
||.-+ ++|- --.|..|.. .+.=+..-.-. .++-+++..-=||= ||=+---|-+++++.++
T Consensus 278 ---gi~~~-d~p~~~~~ptP~~~~g~~--~v~VGRiR~d~~~~~~l~~w~~~DNlr~GAA~nav~iaE~l~~~ 344 (347)
T PRK06728 278 ---GVILQ-DNPSEQLYPMPLYAEGKI--DTFVGRIRKDPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVEE 344 (347)
T ss_pred ---CCEEe-CCCcccCCcCccccCCCC--eEEEeCccccCCCCCeEEEEEEechHHHHHHHHHHHHHHHHHHc
Confidence 33333 3320 011222322 12222222111 13346665556773 56555556666666543
No 29
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3.7e-32 Score=275.97 Aligned_cols=235 Identities=17% Similarity=0.180 Sum_probs=185.9
Q ss_pred eeEEEEc-cChhHHHHHH-HHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAING-FGRIGRNFLR-CWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr-~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+||||+| +|.+|+.++| ++.+++ |++ .++ ++ +.|. + +++..+.++|+.+.++..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~---f~~---~~l-------~~--~ss~--------~-sg~~~~~f~g~~~~v~~~ 57 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEEND---FDL---IEP-------VF--FSTS--------Q-AGGAAPSFGGKEGTLQDA 57 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCC---CCc---CcE-------EE--ecch--------h-hCCcccccCCCcceEEec
Confidence 7999999 8999999998 554443 762 111 11 1221 1 344455678877777654
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC--C--CeEecC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD--E--PIISNA 218 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~--~--~IISna 218 (416)
.++.. | .++|+||.|+|...+++++++..++|++.+||+.++ ++++|++||+||++.+... . ++|+||
T Consensus 58 ~~~~~--~--~~~Divf~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~~g~~iIanP 133 (369)
T PRK06598 58 FDIDA--L--KKLDIIITCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALANGVKTFVGG 133 (369)
T ss_pred CChhH--h--cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhhcCCCEEEcC
Confidence 44443 3 379999999999999999999999996658999987 3579999999999987642 2 489999
Q ss_pred CcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhHHH--------------------
Q 014890 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDLR-------------------- 277 (416)
Q Consensus 219 SCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~r-------------------- 277 (416)
+|+|++++..|+||++.+ +|+++.++|||++||. .+.+|+.....+
T Consensus 134 nC~tt~~~laL~PL~~~~-------------~i~~viVst~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~ 200 (369)
T PRK06598 134 NCTVSLMLMALGGLFKND-------------LVEWVSVMTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDI 200 (369)
T ss_pred ChHHHHHHHHHHHHHhcC-------------CceEEEEEeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhh
Confidence 999999999999999999 9999999999999999 666664322211
Q ss_pred -----------------hhhccccccccCC-----CChHHHHHH-------Hc----ccccCCeeeEEEeeCcccceEEE
Q 014890 278 -----------------RARAAALNIVPTS-----TGAAKAVAL-------VL----PALKGKLNGIALRVPTPNVSVVD 324 (416)
Q Consensus 278 -----------------r~Raaa~NIIPt~-----tGaakav~k-------Vl----PeL~gkl~g~avRVPt~~vs~vd 324 (416)
..+.+++|+||+. +|+++++.| || |+| +++++|+||||.++|...
T Consensus 201 ~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~t~EE~K~~~EtrKIL~~~~~~l--~vs~tcVRVPV~~gHs~s 278 (369)
T PRK06598 201 DRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQSREEWKGQAETNKILGLTKNPI--PVDGLCVRVGAMRCHSQA 278 (369)
T ss_pred hhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCchHHHHHHHHHHHHHhCCCCCCC--eEEEEEEEcceeccEEEE
Confidence 1257899999997 588877764 55 555 599999999999999999
Q ss_pred EEEEEccCCCHHHHHHHHHhcc
Q 014890 325 LVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 325 l~v~l~k~vs~eeV~~a~~~aa 346 (416)
++++|+++++.+|++++|++++
T Consensus 279 v~ve~~~~~~~~~i~~~L~~~~ 300 (369)
T PRK06598 279 LTIKLKKDVPLAEIEEILAAHN 300 (369)
T ss_pred EEEEECCCCCHHHHHHHHHhcC
Confidence 9999999999999999999854
No 30
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.96 E-value=5.5e-28 Score=243.23 Aligned_cols=235 Identities=23% Similarity=0.303 Sum_probs=175.6
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhcccccc-----ccCCCceeeecCCeEEECCEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL-----GIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~-----G~f~~~v~~~~~~~i~v~G~~ 140 (416)
|++||+|+| +|.+|+.++|.|.+.+ .++|+++... ....-..+ ...| |.+.+. + +.
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p--~~el~~~~~s--~~~~G~~~--~~~~~~~~~~~~~~~----------~--~~ 63 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHP--WFEVTALAAS--ERSAGKTY--GEAVRWQLDGPIPEE----------V--AD 63 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCC--CceEEEEEcC--hhhcCCcc--ccccccccccccccc----------c--cc
Confidence 579999999 9999999999998764 4899988221 11111111 1111 001100 0 12
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC------
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP------ 210 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~------ 210 (416)
+.+.. .+|+.+ .++|+|++|++...+.+.++...++|++ +|+.++ .++.|.+++++|++.|..
T Consensus 64 ~~v~~-~~~~~~----~~~DvVf~a~p~~~s~~~~~~~~~~G~~--vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~ 136 (349)
T PRK08664 64 MEVVS-TDPEAV----DDVDIVFSALPSDVAGEVEEEFAKAGKP--VFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRK 136 (349)
T ss_pred eEEEe-CCHHHh----cCCCEEEEeCChhHHHHHHHHHHHCCCE--EEECCchhcCCCCCCcCChhhCHHHHcChHhhHh
Confidence 33322 244433 2789999999999999998888888984 454444 346789999999886531
Q ss_pred ----CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhcccccc
Q 014890 211 ----DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNI 286 (416)
Q Consensus 211 ----~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NI 286 (416)
..+|||||||+|+|+++.|++|++ | ||+++.|||+|++|++++-.. ..+.+++|+
T Consensus 137 ~~~~~~~iVa~p~C~~t~~~l~l~pL~~-~-------------gl~~i~v~~~~g~SgaG~~~~-------~~~~~~~N~ 195 (349)
T PRK08664 137 RRGWDGFIVTNPNCSTIGLVLALKPLMD-F-------------GIERVHVTTMQAISGAGYPGV-------PSMDIVDNV 195 (349)
T ss_pred hccCCceEEEccCHHHHHHHHHHHHHHH-C-------------CCcEEEEEEEeccccCCcccc-------hhhhhhcCc
Confidence 135999999999999999999999 9 999999999999999975322 245689999
Q ss_pred ccCCCCh--------HHHHHHH----cccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc
Q 014890 287 VPTSTGA--------AKAVALV----LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 287 IPt~tGa--------akav~kV----lPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~ 347 (416)
+|...+. .+.+.++ +|.++.+|+++++|||+++||+.+++++++++++.+|++++|+++..
T Consensus 196 ~p~~~~~ehrh~~Ei~~~l~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~~~l~~~~~~~~v~~~~~~~~~ 268 (349)
T PRK08664 196 IPYIGGEEEKIEKETLKILGKFEGGKIVPADFPISATCHRVPVIDGHTEAVFVKFKEDVDPEEIREALESFKG 268 (349)
T ss_pred ccccCchhhhhhHHHHHHhhhcccccccCCCceEEEEeEEccccccEEEEEEEEeCCCCCHHHHHHHHHhccC
Confidence 9998775 2444343 56668889999999999999999999999999999999999998765
No 31
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=99.96 E-value=3.2e-27 Score=237.60 Aligned_cols=235 Identities=20% Similarity=0.240 Sum_probs=185.1
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+++||||.| +|-+|+.++|+|.+++.|.++|+.+.. + + +.|+.+.+.|+.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS-------------~----------~-saG~~~~~~~~~~~v~- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALAS-------------E----------E-SAGETLRFGGKSVTVQ- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc-------------c----------C-cCCceEEECCcceEEE-
Confidence 468999999 999999999999987545567655531 1 1 4567777888766664
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC--CCCeEecCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP--DEPIISNAS 219 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~--~~~IISnaS 219 (416)
+++++.|. ++|+||.|+|...+.++++...++|+ +||+.++ ++++|.++|+||.+.++. ..+||+||+
T Consensus 58 --~~~~~~~~--~~Dvvf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~~~~iIAnPg 131 (336)
T PRK08040 58 --DAAEFDWS--QAQLAFFVAGREASAAYAEEATNAGC--LVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNIIAVAD 131 (336)
T ss_pred --eCchhhcc--CCCEEEECCCHHHHHHHHHHHHHCCC--EEEECChHhcCCCCCceEccccCHHHHhhhccCCEEECCC
Confidence 45667674 79999999999999999999999999 7898886 347899999999944432 367999999
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhH------------HHhhhcccccc
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRD------------LRRARAAALNI 286 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d------------~rr~Raaa~NI 286 (416)
|+|++++..|+||++++ +|+++.++|++++||. +...+..++. ....+..++|+
T Consensus 132 C~~t~~~laL~PL~~~~-------------~i~~viV~t~qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~ 198 (336)
T PRK08040 132 SLTSQLLTAIKPLIDQA-------------GLSRLHVTNLLSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNM 198 (336)
T ss_pred HHHHHHHHHHHHHHHhC-------------CCeEEEEEeeccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCce
Confidence 99999999999999999 9999999999999999 5555542211 11223479999
Q ss_pred ccCC---CChHHHHHHHcccc----c---CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 287 VPTS---TGAAKAVALVLPAL----K---GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 287 IPt~---tGaakav~kVlPeL----~---gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
+|.. .|......++.||+ + -+++.+++|||+++||+..++++++++++.+|+.++|+++
T Consensus 199 ~pyi~~~~g~~~~erh~~~Ei~kiL~~~~~~vs~t~~~vPv~rG~~~tv~v~~~~~v~~~~i~~~l~~~ 267 (336)
T PRK08040 199 LPLLPDSEGSVREERRLVDQVRKILQDEGLPISVSCVQSPVFYGHAQMVHFEALRPLAAEEARDALEQG 267 (336)
T ss_pred eeccCCcCCcchHhhhhHHHHHHHhCCCCCeEEEEeEEecchhcEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 9993 23333334433332 1 1388999999999999999999999999999999999984
No 32
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=99.96 E-value=1.2e-27 Score=240.07 Aligned_cols=254 Identities=24% Similarity=0.287 Sum_probs=187.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCC-h-hHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGG-V-KQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~-~-~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+||||+| +|.+|+.++|.+.+++ .++|+++-+... . +.+..++.+. .|+.+.+. + ..+.+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~--~~~l~~v~~~~~~~g~~~~~~~~~~-~~~~~~~~----------~--~~~~~~~ 65 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHP--YFELAKVVASPRSAGKRYGEAVKWI-EPGDMPEY----------V--RDLPIVE 65 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC--CceEEEEEEChhhcCCcchhhcccc-ccCCCccc----------c--ceeEEEe
Confidence 5899999 8999999999888764 489988854310 0 0111111000 00000000 0 1122221
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC---------CC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP---------DE 212 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~---------~~ 212 (416)
-+++ .| .++|+|+.|++...+.+.++...++|++ +|+.++ ++++|.+++++|++.|.. ..
T Consensus 66 -~~~~--~~--~~~DvVf~a~p~~~s~~~~~~~~~~G~~--VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~ 138 (341)
T TIGR00978 66 -PEPV--AS--KDVDIVFSALPSEVAEEVEPKLAEAGKP--VFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKG 138 (341)
T ss_pred -CCHH--Hh--ccCCEEEEeCCHHHHHHHHHHHHHCCCE--EEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCc
Confidence 2232 23 4799999999999999999988899994 454443 456899999999886652 12
Q ss_pred CeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhccccccccCCCC
Q 014890 213 PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTG 292 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIPt~tG 292 (416)
.||+||+|+|+|+++.|++|+++| +|+++.|||+|++||.++.... .+.+++|++|...+
T Consensus 139 ~iVanPgC~~t~~~lal~pL~~~~-------------~i~~v~v~t~~gvSgaG~~~~~-------~~~~~~Ni~py~~~ 198 (341)
T TIGR00978 139 FIVTNPNCTTAGLTLALKPLIDAF-------------GIKKVHVTTMQAVSGAGYPGVP-------SMDILDNIIPHIGG 198 (341)
T ss_pred cEEeCCCcHHHHHHHHHHHHHHhC-------------CCcEEEEEEEEccCCCCCCCCc-------cchhhCCeEecCcH
Confidence 599999999999999999999999 9999999999999999764322 14479999999876
Q ss_pred h----HHHHHHHcccccC--------CeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcccccCCC
Q 014890 293 A----AKAVALVLPALKG--------KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEP 360 (416)
Q Consensus 293 a----akav~kVlPeL~g--------kl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil~~~~~p 360 (416)
. ..++.++|+.+.| +++.+++|||+.+||+.+++++++++++.+|++++|+++.+.++...|.-+.+|
T Consensus 199 ~ehrh~~Ei~~il~~~~~~~~~~~~~~v~~t~~~vPv~rG~~~tv~v~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 278 (341)
T TIGR00978 199 EEEKIERETRKILGKLENGKIEPAPFSVSATTTRVPVLDGHTESVHVEFDKKFDIEEIREALKSFRGLPQKLGLPSAPEK 278 (341)
T ss_pred HHHHHHHHHHHHhCccccCcccCCCceEEEEEEEcCccccEEEEEEEEeCCCCCHHHHHHHHHhCcCccccccCCCCCCC
Confidence 4 2456788887744 499999999999999999999999999999999999998877666666666677
Q ss_pred eeee
Q 014890 361 LVSV 364 (416)
Q Consensus 361 ~VS~ 364 (416)
+|-.
T Consensus 279 fv~~ 282 (341)
T TIGR00978 279 PIIV 282 (341)
T ss_pred cEEE
Confidence 6644
No 33
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=99.95 E-value=1e-26 Score=234.52 Aligned_cols=235 Identities=17% Similarity=0.256 Sum_probs=185.2
Q ss_pred cccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 65 AQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 65 ~~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.+++||+|.| .|.+|+.++|.|.+++.+.++++.+- |. + ..|+.+.++|+.+.+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~--------r-saGk~~~~~~~~~~v 59 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SA--------R-SAGKKVTFEGRDYTV 59 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------cc--------C-CCCCeeeecCceeEE
Confidence 44568999999 99999999999998754456654442 11 1 345555566655554
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCCC------CC
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKPD------EP 213 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~~------~~ 213 (416)
.. -++.. | .++|+||.|+|...+++++++..++|+ +||+.++ +++.|.++|++|.+.++.. .+
T Consensus 60 ~~-~~~~~--~--~~~D~vf~a~p~~~s~~~~~~~~~~g~--~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~ 132 (344)
T PLN02383 60 EE-LTEDS--F--DGVDIALFSAGGSISKKFGPIAVDKGA--VVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGA 132 (344)
T ss_pred Ee-CCHHH--H--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCc
Confidence 32 23332 3 379999999999999999999989998 7898886 4578999999999877642 24
Q ss_pred eEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchhH------------HHhhh
Q 014890 214 IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRD------------LRRAR 280 (416)
Q Consensus 214 IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d------------~rr~R 280 (416)
||+||+|+|++++..|+||++++ +|+++.++|++++||. ...++..+.. -+...
T Consensus 133 iIanPgC~~t~~~laL~PL~~~~-------------~i~~vvv~t~~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~ 199 (344)
T PLN02383 133 LIANPNCSTIICLMAVTPLHRHA-------------KVKRMVVSTYQAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQ 199 (344)
T ss_pred EEECCCcHHHHHHHHHHHHHHcC-------------CeeEEEEEeeecccccCHHHHHHHHHHHHHHhcCCCCchhccCC
Confidence 99999999999999999999999 9999999999999999 6666655421 12346
Q ss_pred ccccccccCC-----CChHHHHHH-------Hc--ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 281 AAALNIVPTS-----TGAAKAVAL-------VL--PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 281 aaa~NIIPt~-----tGaakav~k-------Vl--PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
..++|++|+. +|+++++.+ ++ |++ +++.+++|||+.+||+..++++++++++.||+.++|+++
T Consensus 200 ~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~--~v~~t~~~vPv~rG~~~sv~v~~~~~v~~~~~~~~l~~~ 276 (344)
T PLN02383 200 QYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDV--KVTATCIRVPVMRAHAESINLQFEKPLDEATAREILASA 276 (344)
T ss_pred ccccccccccCccccCCCChHHHHHHHHHHHHhCCCCC--eEEEEeEecCccccEEEEEEEEECCCCCHHHHHHHHhcC
Confidence 6899999986 366655554 33 344 499999999999999999999999999999999999984
No 34
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=99.95 E-value=2.6e-26 Score=231.05 Aligned_cols=235 Identities=20% Similarity=0.239 Sum_probs=183.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||+|.| +|-+|+.++|+|.++..+.++++.+-.. + ..|+.|.+.|+...+..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-----------------------~-~aG~~l~~~~~~l~~~~- 58 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-----------------------E-SAGHSVPFAGKNLRVRE- 58 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-----------------------c-cCCCeeccCCcceEEee-
Confidence 37999999 8999999999999765445666555321 1 23555556665555532
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC---CCCCCeEEeecCccCCCC-C-CCeEecCCcc
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG---KGDIPTYVVGVNADAYKP-D-EPIISNASCT 221 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps---kd~~ptvV~gVN~~~y~~-~-~~IISnaSCT 221 (416)
++...| .++|+||.|+|...+.++++..+++|+ ++|+.++ .+++|+++|+||.+.++. . .+||+||+|+
T Consensus 59 --~~~~~~--~~vD~vFla~p~~~s~~~v~~~~~~G~--~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~~~~iIAnPgC~ 132 (336)
T PRK05671 59 --VDSFDF--SQVQLAFFAAGAAVSRSFAEKARAAGC--SVIDLSGALPSAQAPNVVPEVNAERLASLAAPFLVSSPSAS 132 (336)
T ss_pred --CChHHh--cCCCEEEEcCCHHHHHHHHHHHHHCCC--eEEECchhhcCCCCCEEecccCHHHHccccCCCEEECCCcH
Confidence 222235 389999999999999999999999998 6888876 347999999999998764 2 5799999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccc-hhhhccchh---HH---------Hhhhcccccccc
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHR---DL---------RRARAAALNIVP 288 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~---d~---------rr~Raaa~NIIP 288 (416)
|++++..|+||++.| +++++.++|++++||. ....+.... .+ ...+..++|++|
T Consensus 133 ~t~~~laL~PL~~~~-------------~~~~v~v~t~~~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P 199 (336)
T PRK05671 133 AVALAVALAPLKGLL-------------DIQRVQVTACLAVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLA 199 (336)
T ss_pred HHHHHHHHHHHHHhc-------------CCCEEEEEEeecCcccCcccchHHHHHHHHHhCCCCcccccccccccccccc
Confidence 999999999999999 9999999999999998 455554211 11 123567889999
Q ss_pred CCC-----ChHHHHHHHccccc-------CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 289 TST-----GAAKAVALVLPALK-------GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 289 t~t-----Gaakav~kVlPeL~-------gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
+.. |+++++.+..||+. -+++.+++|||+++||+..++++++++++.+|+++++++++
T Consensus 200 ~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~l~~~~ 269 (336)
T PRK05671 200 QVGAPDAQGHTALERRLVAELRQLLGLPELKISVTCIQVPVFFGDSLSVALQSAAPVDLAAVNAALEAAP 269 (336)
T ss_pred ccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEEeEEechhhhEeeEEEEEECCCCCHHHHHHHHhCCC
Confidence 863 77777776666532 23889999999999999999999999999999999999553
No 35
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=99.90 E-value=1.3e-22 Score=204.10 Aligned_cols=237 Identities=18% Similarity=0.157 Sum_probs=173.8
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.| .|.+|+.++|.|.+.+ +++++++-+-... ...+ ...|+.+... . ...+ .
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p--~~elv~v~~~~~~---g~~l--~~~~~~~~~~----------~---~~~~-~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP--EVEIVAVTSRSSA---GKPL--SDVHPHLRGL----------V---DLVL-E 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC--CceEEEEECcccc---Ccch--HHhCcccccc----------c---Ccee-e
Confidence 458999999 6999999999998764 4899888752111 0001 0111111100 0 0111 1
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CC-C------------------CCeEEee
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KG-D------------------IPTYVVG 202 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd-~------------------~ptvV~g 202 (416)
. .++..| .++|+|+.|++.....+.+...+++|+ +||+.++ ++ + .|..+++
T Consensus 60 ~--~~~~~~--~~vD~Vf~alP~~~~~~~v~~a~~aG~--~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe 133 (343)
T PRK00436 60 P--LDPEIL--AGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPE 133 (343)
T ss_pred c--CCHHHh--cCCCEEEECCCcHHHHHHHHHHHhCCC--EEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCc
Confidence 1 111123 369999999999999999999999887 8898876 22 3 6899999
Q ss_pred cCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccc-hhhhccchhHHHhh
Q 014890 203 VNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGD-QRLLDASHRDLRRA 279 (416)
Q Consensus 203 VN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~-Q~~lD~~~~d~rr~ 279 (416)
+|.+.++. .+||+||+|+|++++..|+||++.+ +|+ +..++|++++||. ....+..+...+..
T Consensus 134 ~~~~~i~~-~~iIanPgC~~t~~~l~L~PL~~~~-------------~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~~~ 199 (343)
T PRK00436 134 LNREEIKG-ARLIANPGCYPTASLLALAPLLKAG-------------LIDPDSIIIDAKSGVSGAGRKASEGTLFSEVNE 199 (343)
T ss_pred cCHHHhcC-CCEEECCCCHHHHHHHHHHHHHHcC-------------CCCCCCEEEEEEEecccCCCCccccccchhhcC
Confidence 99998875 5899999999999999999999998 888 8999999999999 56666554222222
Q ss_pred hccccccccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 280 Raaa~NIIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
.-.++|++|+. ...++.+.+-.+.++++.+++|||++.||+..++++++++++.+|++++++++-
T Consensus 200 ~~~~y~~~~h~--h~~Ei~~~l~~~~~~v~~t~~~vPv~~G~~~tv~v~~~~~~~~~~~~~~~~~~y 264 (343)
T PRK00436 200 NLRPYKVGGHR--HTPEIEQELSALAGEVSFTPHLVPMTRGILATIYARLKDPVTAEDVRAAYEEFY 264 (343)
T ss_pred CeeecccCCCC--CHHHHHHHHHHhcCCEEEEeEEecccCcEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 33477777764 344455444333237999999999999999999999999999999999998643
No 36
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=99.86 E-value=4.7e-21 Score=193.21 Aligned_cols=234 Identities=16% Similarity=0.150 Sum_probs=165.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCE-EEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK-VIQVVSN 146 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~-~I~v~~~ 146 (416)
+||||.| +|.+|+.++|.|.+.+ .++++++=+... .....+ ...|+.+. +. ...+ ..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP--~~el~~l~~s~~--sagk~~--~~~~~~l~--------------~~~~~~~-~~ 59 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP--EVEITYLVSSRE--SAGKPV--SEVHPHLR--------------GLVDLNL-EP 59 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC--CceEEEEeccch--hcCCCh--HHhCcccc--------------ccCCcee-ec
Confidence 5899999 7999999999998764 589886632200 000001 11111111 10 0111 11
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CC-------------------CCCeEEeec
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KG-------------------DIPTYVVGV 203 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd-------------------~~ptvV~gV 203 (416)
.++.+ |.+ ++|+||.|++...+++.++..+++|+ +||+.++ ++ +.|..++++
T Consensus 60 ~~~~~--~~~-~~DvVf~alP~~~s~~~~~~~~~~G~--~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~ 134 (346)
T TIGR01850 60 IDEEE--IAE-DADVVFLALPHGVSAELAPELLAAGV--KVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPEL 134 (346)
T ss_pred CCHHH--hhc-CCCEEEECCCchHHHHHHHHHHhCCC--EEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCcc
Confidence 12222 222 79999999999999999999999986 6888775 22 478999999
Q ss_pred CccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhcccccccccccee--EEEEEeecccccc-hhhhccchhHHHhhh
Q 014890 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGII--KGTMTTTHSYTGD-QRLLDASHRDLRRAR 280 (416)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~--~~~mTTiHa~T~~-Q~~lD~~~~d~rr~R 280 (416)
|.+.+.. .+||+||+|.|+++...|+||++.+ .|+ +..++|++++||. ....+..+-..+...
T Consensus 135 n~~~i~~-~~iianPgC~~t~~~l~L~PL~~~~-------------~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~~~~ 200 (346)
T TIGR01850 135 HREEIKG-ARLIANPGCYPTATLLALAPLLKEG-------------LIDPTSIIVDAKSGVSGAGRKASPANHFPEVNEN 200 (346)
T ss_pred CHHHhCC-CcEEEcCCcHHHHHHHHHHHHHHcC-------------CCCCCcEEEEEEEECcccCcCccccccchhhcCC
Confidence 9988764 6799999999999999999999998 786 7899999999999 456665443222222
Q ss_pred ccccccccCCCChHHHHHH----Hc-ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcc
Q 014890 281 AAALNIVPTSTGAAKAVAL----VL-PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESA 346 (416)
Q Consensus 281 aaa~NIIPt~tGaakav~k----Vl-PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa 346 (416)
-.+.|+.|+. +..++.+ ++ +++ +++.+++|||+.+||+..++++++++++.||+.++|+++-
T Consensus 201 ~~~y~~~~h~--h~~Ei~~~l~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~~~~~~~~~y 267 (346)
T TIGR01850 201 LRPYKVTGHR--HTPEIEQELGRLAGGKV--KVSFTPHLVPMTRGILATIYAKLKDGLTEEDLRAAYEEFY 267 (346)
T ss_pred eeeeccCCcC--cHHHHHHHHHHhcCCCC--CEEEEeEEeeccccEEEEEEEecCCCCCHHHHHHHHHHHh
Confidence 2234555543 2333333 32 333 4899999999999999999999999999999999999754
No 37
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=99.86 E-value=1.7e-20 Score=191.84 Aligned_cols=237 Identities=11% Similarity=0.088 Sum_probs=168.4
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
.|++||+|.| +|.+|+.++|.|.+++ .++|+.+-.- .. .|+- +. .....+.+....-+
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP--~~el~~l~s~---~s----------aG~~---i~---~~~~~l~~~~~~~~ 94 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP--DFEITVMTAD---RK----------AGQS---FG---SVFPHLITQDLPNL 94 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC--CCeEEEEECh---hh----------cCCC---ch---hhCccccCccccce
Confidence 4778999999 8999999999999884 4888777531 00 0110 00 00000111111111
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCC--------CCeEEeecCccC-CC--
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGD--------IPTYVVGVNADA-YK-- 209 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~--------~ptvV~gVN~~~-y~-- 209 (416)
..-++. .| .++|+||.|+|...+.+.++. +++|+ +||+.++ +++ .|..++++|.+. |.
T Consensus 95 ~~~~~~--~~--~~~DvVf~Alp~~~s~~i~~~-~~~g~--~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglp 167 (381)
T PLN02968 95 VAVKDA--DF--SDVDAVFCCLPHGTTQEIIKA-LPKDL--KIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLT 167 (381)
T ss_pred ecCCHH--Hh--cCCCEEEEcCCHHHHHHHHHH-HhCCC--EEEEcCchhccCCcccchhccCCCCCCcccchhhhcccc
Confidence 111222 23 379999999999999999888 57775 6788776 334 688999999874 43
Q ss_pred -------CCCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccce--eEEEEEeecccccc-hhhhccch-hHHHh
Q 014890 210 -------PDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGI--IKGTMTTTHSYTGD-QRLLDASH-RDLRR 278 (416)
Q Consensus 210 -------~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI--~~~~mTTiHa~T~~-Q~~lD~~~-~d~rr 278 (416)
...+||+||+|.|++++..|+||++++ +| ++..+++++++||. ....+..+ .+...
T Consensus 168 E~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~-------------~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~ 234 (381)
T PLN02968 168 ELQREEIKSARLVANPGCYPTGIQLPLVPLVKAG-------------LIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAE 234 (381)
T ss_pred hhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC-------------CCCCceEEEEEeeeccccCcccchhhhHHHhcc
Confidence 235799999999999999999999999 99 78999999999999 55555422 22111
Q ss_pred -hhccccccccCCCChHHHHHHHc-ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhc
Q 014890 279 -ARAAALNIVPTSTGAAKAVALVL-PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRES 345 (416)
Q Consensus 279 -~Raaa~NIIPt~tGaakav~kVl-PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~a 345 (416)
-|+.+.|..|+..-.-+.+.+++ +++ +++.+++|||+.+||+..++++++++++.+|+.++|+++
T Consensus 235 n~~~y~~~~h~h~pEie~~~~~~~~~~~--~v~ft~~~vPv~rG~~~tv~v~~~~~~~~~~v~~~~~~~ 301 (381)
T PLN02968 235 GIGAYGVTRHRHVPEIEQGLADAAGSKV--TPSFTPHLMPMSRGMQSTVYVHYAPGVTAEDLHQHLKER 301 (381)
T ss_pred cceeeccCCCCCcchHHHHHHHHhCCCC--CEEEEeEEeeccccEEEEEEEEeCCCCCHHHHHHHHHHh
Confidence 25667777776533222233332 444 499999999999999999999999999999999999995
No 38
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=99.76 E-value=3.2e-17 Score=164.00 Aligned_cols=219 Identities=14% Similarity=0.077 Sum_probs=159.3
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
|++||||.| +|-+|+.++|.|.+++ .++++++-.. .+..+
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp--~~~l~~~~s~--------------------------~~~~~----------- 41 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS--DIELLSIPEA--------------------------KRKDA----------- 41 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC--CeEEEEEecC--------------------------CCCcc-----------
Confidence 679999999 9999999999998886 4888776421 00000
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCC--CCCCeEecCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--PDEPIISNAS 219 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~--~~~~IISnaS 219 (416)
. +.+..|. ++|+||.|++...+++++++..++|+ +||+.++ +++.|..++++|++..+ ...++|+||+
T Consensus 42 -~-~~~~~~~--~~DvvFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPg 115 (313)
T PRK11863 42 -A-ARRELLN--AADVAILCLPDDAAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPG 115 (313)
T ss_pred -c-Cchhhhc--CCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCC
Confidence 0 1111232 68999999999999999999889998 6898886 45799999999975332 2467999999
Q ss_pred cchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccc---cc-hhhhccchhHHHhhhccccccccCCCC-h-
Q 014890 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYT---GD-QRLLDASHRDLRRARAAALNIVPTSTG-A- 293 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T---~~-Q~~lD~~~~d~rr~Raaa~NIIPt~tG-a- 293 (416)
|.+++++..|+||+++. .|++...++++++| |. .+..+..+.+ . -....|++|..-+ .
T Consensus 116 C~~Ta~~laL~PL~~~~-------------li~~~~~i~i~a~SG~SGAG~~~~~~~~~~--~-~~~~~n~~~Y~~~~~H 179 (313)
T PRK11863 116 CYPTGAIALLRPLVDAG-------------LLPADYPVSINAVSGYSGGGKAMIAAYEAA--P-DGKAPAFRLYGLGLAH 179 (313)
T ss_pred cHHHHHHHHHHHHHHcC-------------CcccCceEEEEEccccccCCccchHHHhhh--h-hhhccCeeeccCCcCC
Confidence 99999999999999976 56555568888885 44 4444433300 0 1246789998755 2
Q ss_pred --HHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEE---ccCCCHHHHHHHHHhccc
Q 014890 294 --AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESAD 347 (416)
Q Consensus 294 --akav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l---~k~vs~eeV~~a~~~aa~ 347 (416)
..++.+.+-.+. ++.-+..-+|+.+|++..+++++ +++++.+|+.++++++-+
T Consensus 180 rH~pEi~~~l~~~~-~~~F~Phl~p~~rGil~Ti~~~~~~~~~~~~~~~i~~~~~~~Y~ 237 (313)
T PRK11863 180 KHLPEMQAHAGLAR-RPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYA 237 (313)
T ss_pred cchHHHHHHhcccc-CcEEEeeEccccCcEEEEEEEEecccCCCCCHHHHHHHHHHHcC
Confidence 344445443321 22223334799999999999997 888999999999998643
No 39
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=99.63 E-value=1.1e-15 Score=148.68 Aligned_cols=226 Identities=19% Similarity=0.227 Sum_probs=162.6
Q ss_pred eEE-EEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECC---------
Q 014890 70 KVA-ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG--------- 138 (416)
Q Consensus 70 kVa-ING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G--------- 138 (416)
|+| |.| +|.+|++++-.|..++ .++|....- | -+ +.|+...+.|
T Consensus 5 k~a~vlGaTGaVGQrFi~lLsdhP--~f~ikvLgA--------------S--------~R-SAGK~ya~a~~wkqt~~lp 59 (361)
T KOG4777|consen 5 KSAPVLGATGAVGQRFISLLSDHP--YFSIKVLGA--------------S--------KR-SAGKRYAFAGNWKQTDLLP 59 (361)
T ss_pred cccceeeccchhHHHHHHHhccCC--cceeeeecc--------------c--------cc-ccCCceEecccchhccccc
Confidence 566 999 9999999998887764 466533321 1 12 4444455555
Q ss_pred ---EEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCCC-
Q 014890 139 ---KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYKP- 210 (416)
Q Consensus 139 ---~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~~- 210 (416)
..+.|. +-+++.| .++|||+.+.+.-...|.-+...++|. +|+|+.. .+++|++||.||++.++.
T Consensus 60 ~~~~e~~V~-ec~~~~F----~ecDIvfsgldad~ageiek~f~eag~--iiVsNaknyRre~~VPLvvP~VNpehld~i 132 (361)
T KOG4777|consen 60 ESAHEYTVE-ECTADSF----NECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLDGI 132 (361)
T ss_pred chhhhhhHh-hcChhhc----ccccEEEecCCchhhhhhhHHHHhcCe--EEEeCchhcccCCCCceEecccCHHHhhhh
Confidence 334443 2345544 489999999999999988888999998 8998875 357999999999997653
Q ss_pred ---------C-CCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchh-hhccchhHHHhh
Q 014890 211 ---------D-EPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQR-LLDASHRDLRRA 279 (416)
Q Consensus 211 ---------~-~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~-~lD~~~~d~rr~ 279 (416)
. --||+|++|+|..++..||+||++|- .|++..++|||+.+|..- ..-+. -|
T Consensus 133 k~~~~~~k~~~G~iI~nsNCSTa~~v~plkpL~~~fg------------pi~~~~v~t~QAiSGAG~apgv~~-vd---- 195 (361)
T KOG4777|consen 133 KVGLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFG------------PIKRMVVSTYQAISGAGAAPGVEL-VD---- 195 (361)
T ss_pred eeccccCCCCCceEEecCCCCeeeEEeechhHHhhcc------------chhhhhhhhhhhhccCCcCCCchH-HH----
Confidence 1 13999999999999999999999992 488889999999999832 11111 11
Q ss_pred hccccccccCCCChHH----HHHHHc-----cccc------CCeeeEEEeeCcccceEEEEEEEEccCC--CHHHHHHHH
Q 014890 280 RAAALNIVPTSTGAAK----AVALVL-----PALK------GKLNGIALRVPTPNVSVVDLVVQVSKKT--FAEEVNAAF 342 (416)
Q Consensus 280 Raaa~NIIPt~tGaak----av~kVl-----PeL~------gkl~g~avRVPt~~vs~vdl~v~l~k~v--s~eeV~~a~ 342 (416)
...||+|-..|-.. +..++| |-+. -+++..|-|||+.++|+.-+...+..++ +.+|+.+++
T Consensus 196 --ildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqcnRv~v~Dgh~~cis~~f~~~~~pa~~qv~~~l 273 (361)
T KOG4777|consen 196 --ILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQCNRVIVNDGHVKCISTCFRVPVMPAHAQVVNLL 273 (361)
T ss_pred --HHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhcceeeEecCceEEEEEEeecCCCCcHHHHHHHH
Confidence 23488887755431 223444 2121 2356789999999999999999998554 589999999
Q ss_pred Hhcc
Q 014890 343 RESA 346 (416)
Q Consensus 343 ~~aa 346 (416)
.+..
T Consensus 274 ~eyv 277 (361)
T KOG4777|consen 274 FEYV 277 (361)
T ss_pred Hhcc
Confidence 8876
No 40
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=99.61 E-value=2.6e-14 Score=142.94 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=158.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||+|.| .|-.|..++|.|...+ ++|++.+..-.. ++ ..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP--~~el~~l~s~~~---------~~-----------------------------~~ 41 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRD--DIELLSIAPDRR---------KD-----------------------------AA 41 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCC--CeEEEEEecccc---------cC-----------------------------cC
Confidence 4899999 8999999999998875 599988863200 00 01
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCCC--CCCCeEecCCcc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAYK--PDEPIISNASCT 221 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y~--~~~~IISnaSCT 221 (416)
+++++ + .++|+||.|++...++++++...++|+ +||+.++ +++.|..+|++|.+..+ +..++||||+|.
T Consensus 42 ~~~~~-~--~~~D~vFlalp~~~s~~~~~~~~~~g~--~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 42 ERAKL-L--NAADVAILCLPDDAAREAVSLVDNPNT--CIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred CHhHh-h--cCCCEEEECCCHHHHHHHHHHHHhCCC--EEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 11111 1 268999999999999999999888888 6898876 44799999999866332 246899999999
Q ss_pred hhhhHHHHHHHHHHhhhhccccccccccceeEEEEEeeccccc---c-hhhhccchhHHHhhhccccccccCCCC----h
Q 014890 222 TNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTG---D-QRLLDASHRDLRRARAAALNIVPTSTG----A 293 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~---~-Q~~lD~~~~d~rr~Raaa~NIIPt~tG----a 293 (416)
+++++..|+||.++. .|++...+++++.|| . ....+..++..+.. ....|+-|-.-+ +
T Consensus 117 aTa~~LaL~PL~~~~-------------li~~~~~~~~~a~SG~SGAGr~~~~~l~~q~~~~-e~~~~~~~Y~~~~~HrH 182 (310)
T TIGR01851 117 PTGFIALMRPLVEAG-------------ILPADFPITINAVSGYSGGGKAMIADYEQGSADN-PSLQPFRIYGLALTHKH 182 (310)
T ss_pred HHHHHHHHHHHHHcC-------------CccccceEEEEeccccCccChhhhHHhhhcccch-hhccCceeccCCCCCCc
Confidence 999999999999987 676666799999987 3 44444433211100 124456565433 3
Q ss_pred HHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEE---ccCCCHHHHHHHHHhcc
Q 014890 294 AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQV---SKKTFAEEVNAAFRESA 346 (416)
Q Consensus 294 akav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l---~k~vs~eeV~~a~~~aa 346 (416)
..++...+-.+ -++.-+..-+|..+|=+..+++++ +++++.+|+.++|+++=
T Consensus 183 ~pEi~q~l~~~-~~v~FtPhl~p~~RGil~Ti~~~l~~~~~~~~~~~~~~~~~~~Y 237 (310)
T TIGR01851 183 LPEMRVHSGLA-LPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYY 237 (310)
T ss_pred HHHHHHHhCCC-CCEEEEeEEccccCcEEEEEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 34444444222 246677788999999999999999 88899999999999853
No 41
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.48 E-value=2.6e-13 Score=135.40 Aligned_cols=164 Identities=23% Similarity=0.213 Sum_probs=115.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.||+.++..+... +.++++++-|. +++... +++.-.+|.-. .++|.+- ++ .
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~--~~velvAVvdi-d~es~g--la~A~~~Gi~~-----------~~~~ie~-LL--~ 64 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRS--EHLEPGAMVGI-DPESDG--LARARRLGVAT-----------SAEGIDG-LL--A 64 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcC--CCcEEEEEEeC-ChhhHH--HHHHHHcCCCc-----------ccCCHHH-HH--h
Confidence 68999999999999988888764 35999999986 333111 11111122100 0111000 00 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC--CCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~--~~~IISnaSCTTn~L 225 (416)
+| +|. ++|+|++|||....++.+++.+++|+ .+|+..+.-..|++||+||.+.... ..++|+|++|+|+.+
T Consensus 65 ~~---~~~--dIDiVf~AT~a~~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ati~~ 137 (302)
T PRK08300 65 MP---EFD--DIDIVFDATSAGAHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPI 137 (302)
T ss_pred Cc---CCC--CCCEEEECCCHHHHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccHHHHHH
Confidence 11 232 68999999999999999999999998 6676654336899999999887553 358999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeecccc-c--chhhhccc
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYT-G--DQRLLDAS 272 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T-~--~Q~~lD~~ 272 (416)
+..|+++++ . ++.+.. +||+|.+ + ...-+|+.
T Consensus 138 v~Al~~v~~-~-------------~~~eIv-at~~s~s~g~gtr~nidE~ 172 (302)
T PRK08300 138 VAAVSRVAP-V-------------HYAEIV-ASIASKSAGPGTRANIDEF 172 (302)
T ss_pred HHHhcccCc-C-------------ceeeee-eeehhhccCCcccccHHHH
Confidence 999999764 3 577766 9999998 3 35667754
No 42
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.24 E-value=4.1e-11 Score=118.89 Aligned_cols=162 Identities=21% Similarity=0.208 Sum_probs=113.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|.|+||+..+..+.+.+ ++++++|-|. +++... +++...+|. ...++|.+.-+ .
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~--~~elvaV~d~-d~es~~--la~A~~~Gi-----------~~~~~~~e~ll---~ 61 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSE--HLEMVAMVGI-DPESDG--LARARELGV-----------KTSAEGVDGLL---A 61 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCC--CcEEEEEEeC-CcccHH--HHHHHHCCC-----------CEEECCHHHHh---c
Confidence 479999999999998877777643 4999999875 332211 000111221 01122211011 1
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC--CCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP--DEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~--~~~IISnaSCTTn~L 225 (416)
+.++|+|++||+.....+.+...+++|. .||.-.|.. ..|++|+.||.+.... ..++|++++|.|+.+
T Consensus 62 --------~~dIDaV~iaTp~~~H~e~a~~al~aGk-~VIdekPa~-~~plvvp~VN~~~~~~~~~~~iv~c~~~atip~ 131 (285)
T TIGR03215 62 --------NPDIDIVFDATSAKAHARHARLLAELGK-IVIDLTPAA-IGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPI 131 (285)
T ss_pred --------CCCCCEEEECCCcHHHHHHHHHHHHcCC-EEEECCccc-cCCccCCCcCHHHHhcCcCCCEEEcCcHHHHHH
Confidence 1268999999999999999999999996 444444544 5899999999886543 368999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccceeEEEEEeeccccc---chhhhccch
Q 014890 226 APFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTG---DQRLLDASH 273 (416)
Q Consensus 226 ap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~---~Q~~lD~~~ 273 (416)
+..++.+++.+ .+ -.++||++.+. ....+|...
T Consensus 132 ~~al~r~~d~~-------------~~--~iv~ti~s~S~g~g~r~~idel~ 167 (285)
T TIGR03215 132 VAAISRVAPVH-------------YA--EIVASIASRSAGPGTRANIDEFT 167 (285)
T ss_pred HHHHHHhhccc-------------cE--EEEEEEEeeccCCCchhHHHHHH
Confidence 99999998876 45 46788999986 356667654
No 43
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=98.90 E-value=4.2e-08 Score=99.56 Aligned_cols=235 Identities=17% Similarity=0.165 Sum_probs=148.5
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCC--ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTG--GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~--~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
|++||+|.| .|-.|-+++|.|.+++ ++|+..+-... +.. + ...|..+.+.+ ..++
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp--~ve~~~~ss~~~~g~~-~------~~~~p~l~g~~-------------~l~~ 58 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHP--DVELILISSRERAGKP-V------SDVHPNLRGLV-------------DLPF 58 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCC--CeEEEEeechhhcCCc-h------HHhCccccccc-------------cccc
Confidence 568999999 8999999999999886 48966555321 100 0 01111111110 0111
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC--C--------------C----CeEEeec
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG--D--------------I----PTYVVGV 203 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd--~--------------~----ptvV~gV 203 (416)
+.-+++.+ ...++|+||-|+....+++.++..++.|.| ||+.+.+= . . .--|||.
T Consensus 59 -~~~~~~~~--~~~~~DvvFlalPhg~s~~~v~~l~~~g~~--VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGL 133 (349)
T COG0002 59 -QTIDPEKI--ELDECDVVFLALPHGVSAELVPELLEAGCK--VIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGL 133 (349)
T ss_pred -ccCChhhh--hcccCCEEEEecCchhHHHHHHHHHhCCCe--EEECCcccccCCHHHHHHhhCCCCCCchhhhcccccC
Confidence 12234433 234689999999999999999999999994 78877520 0 1 2455554
Q ss_pred ---CccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccce---eEE-EEEeecccccch-hhhccchhH
Q 014890 204 ---NADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGI---IKG-TMTTTHSYTGDQ-RLLDASHRD 275 (416)
Q Consensus 204 ---N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI---~~~-~mTTiHa~T~~Q-~~lD~~~~d 275 (416)
|.++++ ..+.|+||.|-.+|....++||-+. || ... ++-..=.|||.- +.....|-
T Consensus 134 pEl~~e~i~-~A~lIAnPGCypTa~iLal~PL~~~--------------~ll~~~~~~ivdakSG~SGaGrk~s~~~~~- 197 (349)
T COG0002 134 PELHREKIR-GAKLIANPGCYPTAAILALAPLVKA--------------GLLDPDSPPIVDAKSGVSGAGRKASVKNHF- 197 (349)
T ss_pred cccCHHHHh-cCCEeeCCCchHHHHHHHHHHHHHc--------------CCcCCCCceEEEEeEecCcCCCCccccccc-
Confidence 333343 3579999999999999999999776 33 221 222233344442 22222221
Q ss_pred HHhhhccccccccCC---CChHHHHHHHccccc---CCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc
Q 014890 276 LRRARAAALNIVPTS---TGAAKAVALVLPALK---GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348 (416)
Q Consensus 276 ~rr~Raaa~NIIPt~---tGaakav~kVlPeL~---gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~ 348 (416)
-....|+.|-. .-+..++..-+..|. ..+.-+..=+|..+|=+..+++.+++.++.+|+.+++++.=++
T Consensus 198 ----~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~~~~~~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y~~~Y~~ 272 (349)
T COG0002 198 ----PEVNDSLRPYGLTGHRHTPEIEQHLGRLAGRKVPVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAYEEFYAG 272 (349)
T ss_pred ----hhhccccccccccccCchHHHHHHhhhcccCcCceEEecccccccceEEEEEEEecCCCCCHHHHHHHHHHHhCC
Confidence 11234777754 233444555555444 3355566678999999999999999999999999999986443
No 44
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.75 E-value=5.8e-09 Score=90.04 Aligned_cols=111 Identities=27% Similarity=0.330 Sum_probs=76.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCC--hhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGG--VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~--~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
||||.| +|.+|+.++|.|.+.+ +++++.+-.... -+.+... ++.+. ....+.+..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~~~~~~~~~g~~~~~~------~~~~~-------------~~~~~~~~~- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHP--DFELVALVSSSRSAGKPLSEV------FPHPK-------------GFEDLSVED- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTS--TEEEEEEEESTTTTTSBHHHT------TGGGT-------------TTEEEBEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CccEEEeeeeccccCCeeehh------ccccc-------------cccceeEee-
Confidence 799999 9999999999999854 599988865322 1112121 21111 011233322
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC----CCCCCeEEeecCccCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG----KGDIPTYVVGVNADAY 208 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y 208 (416)
-+++.+ .++|+||.|++...+++.+++.++.|+ .||+.++ +++.|.++|++|.+.+
T Consensus 59 ~~~~~~----~~~Dvvf~a~~~~~~~~~~~~~~~~g~--~ViD~s~~~R~~~~~~~~~pevn~~~i 118 (121)
T PF01118_consen 59 ADPEEL----SDVDVVFLALPHGASKELAPKLLKAGI--KVIDLSGDFRLDDDVPYGLPEVNREQI 118 (121)
T ss_dssp TSGHHH----TTESEEEE-SCHHHHHHHHHHHHHTTS--EEEESSSTTTTSTTSEEE-HHHHHHHH
T ss_pred cchhHh----hcCCEEEecCchhHHHHHHHHHhhCCc--EEEeCCHHHhCCCCCCEEeCCcCHHHH
Confidence 233333 489999999999999999999999999 7888876 3468999999998765
No 45
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=98.59 E-value=2.4e-07 Score=85.95 Aligned_cols=104 Identities=16% Similarity=0.257 Sum_probs=77.6
Q ss_pred HHHHHHH-hhhhccccccccccceeEEEEEeecccccc-hhhhccchhHH------------HhhhccccccccCCCC--
Q 014890 229 VKVLDQK-FVTQLNDRIFPMCAGIIKGTMTTTHSYTGD-QRLLDASHRDL------------RRARAAALNIVPTSTG-- 292 (416)
Q Consensus 229 lkvL~~~-f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~-Q~~lD~~~~d~------------rr~Raaa~NIIPt~tG-- 292 (416)
|+||+++ | +++++.++|++++||. .+.+|+..+.- -....+++|++|..-+
T Consensus 1 L~PL~~~l~-------------~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~ 67 (184)
T PF02774_consen 1 LAPLHKALF-------------GLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFE 67 (184)
T ss_dssp HHHHHHTHH-------------HECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBT
T ss_pred CcchhhCcC-------------CCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcc
Confidence 6889997 9 9999999999999999 56666432111 1124589999998744
Q ss_pred -----hHHHHHHHc------ccccCCeeeEEEeeCcccceEEEEEEEEc-cCCCHHHHHHHHHhc
Q 014890 293 -----AAKAVALVL------PALKGKLNGIALRVPTPNVSVVDLVVQVS-KKTFAEEVNAAFRES 345 (416)
Q Consensus 293 -----aakav~kVl------PeL~gkl~g~avRVPt~~vs~vdl~v~l~-k~vs~eeV~~a~~~a 345 (416)
..+.+.+.+ -....+++.+|+|||+..||+..++++++ ++.+++++.++|.+.
T Consensus 68 h~h~~e~~~el~~~~~~~~~l~~~~~v~~t~~~vPv~rG~~~ti~v~~~~~~~~~~~~~~~~~~~ 132 (184)
T PF02774_consen 68 HRHEPEIEEELKMIAETRKILGFPPRVSFTCVRVPVFRGHLATIYVELKETPVDVEEIYEAFYKG 132 (184)
T ss_dssp TTSHHHBHHHHHHHHHHHHHCTETTEEEEEEEEESSSSEEEEEEEEEESSSHHHHHHHHHHHHTS
T ss_pred cCchHHHHHHHHhhccccceeeccccccccEEEEeeeeeEceeEEEEecCCHHHHHHHHHHHhCC
Confidence 233332222 11223789999999999999999999995 888889998888876
No 46
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.09 E-value=9.5e-05 Score=75.13 Aligned_cols=266 Identities=18% Similarity=0.167 Sum_probs=139.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|.|||.+++++..++ ++++|+|=|..+++.+.. + . .+....
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~p--d~ELVgV~dr~~~~~~~~----~--~----------------------~v~~~~ 52 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQP--DMELVGVFSRRGAETLDT----E--T----------------------PVYAVA 52 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCC--CcEEEEEEcCCcHHHHhh----c--C----------------------CccccC
Confidence 589999999999999999988764 499999977633332210 0 0 011111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC-CCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK-PDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~-~~~~IISnaSCTTn~La 226 (416)
+... + ..++|+|+-||+.....+.+...+++|.. ||.+-+.....|-..-.+..-.-. ..-.+|+ +--=-.+-
T Consensus 53 d~~e--~-l~~iDVViIctPs~th~~~~~~~L~aG~N-VV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~--~GwDPG~~ 126 (324)
T TIGR01921 53 DDEK--H-LDDVDVLILCMGSATDIPEQAPYFAQFAN-TVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS--TGWDPGMF 126 (324)
T ss_pred CHHH--h-ccCCCEEEEcCCCccCHHHHHHHHHcCCC-EEECCCcccCCHHHHHHHHHHHHHcCCEEEEE--CCCCcChH
Confidence 1111 1 13689999999999999999999999973 555432100000000000000000 0011222 01111334
Q ss_pred HHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhh-c---cccccccCCCChHHHHHHHc-
Q 014890 227 PFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRAR-A---AALNIVPTSTGAAKAVALVL- 301 (416)
Q Consensus 227 p~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~R-a---aa~NIIPt~tGaakav~kVl- 301 (416)
.+.+.+.+.. +-+| +.||...+.+++.|.+.-|.. + |.+=-|| .-.++..|+
T Consensus 127 si~r~~~ea~--------------lp~g-----~~yt~wG~g~s~ghs~a~~~~~Gv~~a~~~tip----~~dal~~v~~ 183 (324)
T TIGR01921 127 SINRVYGEAV--------------LPKG-----QTYTFWGPGLSQGHSDAVRRIDGVKKAVQYTLP----SEDALEKARR 183 (324)
T ss_pred HHHHHHHhcc--------------CCCC-----cceeccCCCcCchhhhhhcccCCcccceEEEEe----hHHHHHHHHc
Confidence 4555555554 4444 456666777777666543322 1 2444455 345566664
Q ss_pred ---ccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhccc---ccCCCcccccCCCeeeeccCCCCcceee
Q 014890 302 ---PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD---NELKGILSVCDEPLVSVDFRCSDVSSTV 375 (416)
Q Consensus 302 ---PeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~---~~lkgil~~~~~p~VS~Df~g~~~S~i~ 375 (416)
|+|..+ ..|--..++.++.-.+.++|.+.++.-+. ..=--+--++++.+. .|+-|-+|...+
T Consensus 184 Ge~~~l~~~-----------~~h~r~~~vv~e~g~~~~~v~~~i~~~p~yf~~~~t~v~~i~~~~~~-~~~~~~~hg~~~ 251 (324)
T TIGR01921 184 GEAPELTGK-----------QTHKRQCFVVLKDGADHERVENEIRTMPDYFVGYETEVNFIDEATFD-SEHTGMPHGGHV 251 (324)
T ss_pred CCccccccc-----------cceeeeEEEEecCCCCHHHHHHHHhhCcccccCCCcEEEEeChHHHH-HhcCCCCCceEE
Confidence 444322 23445667778877789999999997652 000111122222221 256677777665
Q ss_pred eCCCCccc-CCceEEEEEEecCCcchhhhH
Q 014890 376 DSSLTLVM-GDDMVKVIAWYDNEWGYSQRV 404 (416)
Q Consensus 376 D~~~t~v~-~~~~vK~~~WyDNE~gys~R~ 404 (416)
-.+...-- +.+.+..-.=+|..--|+.+|
T Consensus 252 ~r~g~t~~~~~~~~~~~~~~~~np~~ta~v 281 (324)
T TIGR01921 252 IRTGDSGGTFNQTVEFNLKLDRNPDFTASV 281 (324)
T ss_pred EEEecCCCCcceEEEEEEecCCCHHHHHHH
Confidence 54432222 233344444367333454444
No 47
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.07 E-value=9.8e-06 Score=80.17 Aligned_cols=95 Identities=20% Similarity=0.298 Sum_probs=68.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++||||.|||.||+.+++.|.......+++++|++. +++....+.+ . .++ .
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~-~~~~~~~~~~-----------------~--------~~~--~ 52 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRN-AADLPPALAG-----------------R--------VAL--L 52 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecC-CHHHHHHhhc-----------------c--------Ccc--c
Confidence 6789999999999999999987653345999999885 2222212110 0 111 1
Q ss_pred cCCCCC-CCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i-~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++++ .| ..|+|+||.|.-.-++++++.|++|..=+++|-..
T Consensus 53 ~~l~~ll~~---~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGA 96 (267)
T PRK13301 53 DGLPGLLAW---RPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGA 96 (267)
T ss_pred CCHHHHhhc---CCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhH
Confidence 334443 33 68999999999999999999999999877776443
No 48
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.92 E-value=2.2e-05 Score=67.30 Aligned_cols=112 Identities=29% Similarity=0.353 Sum_probs=67.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
||||.| .|.+|+.+++.+.+.+ +++++++-+. + ......++ ..|++. . + + +. .+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~--~~~l~av~~~-~-~~~~~~~~--~~~~~~----~----------~--~-~~--~~ 55 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHP--DFEVVALAAS-A-RSAGKRVS--EAGPHL----K----------G--E-VV--LE 55 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCC--CceEEEEEec-h-hhcCcCHH--HHCccc----c----------c--c-cc--cc
Confidence 689999 6999999999888764 3899999432 1 11001110 011110 0 0 0 00 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHH---HHHHcCCCEEEEcCCC----CCCCCeEEeecCccCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAG---KHIQAGAKKVLITAPG----KGDIPTYVVGVNADAY 208 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~---~hl~aGAkkVIIsaps----kd~~ptvV~gVN~~~y 208 (416)
.....|...+.|+||-|++.-...+... ..++.|. ++|+..+ .++.|..++++|.+.+
T Consensus 56 ~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~g~--~viD~s~~~~~~~~~~~~~~~~n~~~~ 120 (122)
T smart00859 56 LEPEDFEELAVDIVFLALPHGVSKEIAPLLPKAAEAGV--KVIDLSSAFRMDDDVPYGLPEVNPEAI 120 (122)
T ss_pred cccCChhhcCCCEEEEcCCcHHHHHHHHHHHhhhcCCC--EEEECCccccCCCCceEEcCccCHHHh
Confidence 1222344458899999999887777433 3334555 8887665 2467999999997754
No 49
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.67 E-value=0.00012 Score=71.83 Aligned_cols=91 Identities=26% Similarity=0.317 Sum_probs=60.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC-ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||||.|+|+||+.+++.+...+ +++++++-+.. ..+.....+ .. + +.++ .
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~--~~~l~~v~~~~~~~~~~~~~~----------------~~------~--~~~~--~ 53 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDP--DLRVDWVIVPEHSIDAVRRAL----------------GE------A--VRVV--S 53 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCC--CceEEEEEEcCCCHHHHhhhh----------------cc------C--Ceee--C
Confidence 69999999999999999987754 37887775421 111111100 00 1 2222 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+.+++ +..+|+|+|||+.....+.+...+++|. .|++-.|
T Consensus 54 d~~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk-~Vvi~s~ 93 (265)
T PRK13303 54 SVDAL---PQRPDLVVECAGHAALKEHVVPILKAGI-DCAVISV 93 (265)
T ss_pred CHHHh---ccCCCEEEECCCHHHHHHHHHHHHHcCC-CEEEeCh
Confidence 33334 2468999999999888899999999995 4555444
No 50
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.53 E-value=0.00035 Score=70.99 Aligned_cols=143 Identities=19% Similarity=0.299 Sum_probs=76.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCC---------ChhHHhhhhccccccccCCCceeeec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTG---------GVKQASHLLKYDSTLGIFEADVKPVG 130 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~---------~~~~~a~LlkyDS~~G~f~~~v~~~~ 130 (416)
|++||||.|||.||+.+++.+.++. ..+++||+|-|.. +++.+ ..+-..+|.+..
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~------ 71 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLAD------ 71 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCccc------
Confidence 6799999999999999999987652 1148999997731 12221 111111111000
Q ss_pred CCeEEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCC-----HhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCc
Q 014890 131 TDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVD-----REGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA 205 (416)
Q Consensus 131 ~~~i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s-----~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~ 205 (416)
+.+.. ...++.++ ..+.++|+|+|||+.... .+.+...+++|. -||++.-+ |+-. +.
T Consensus 72 -----~~~~~----~~~d~~el-l~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~Gk--hVVtaNK~---pla~---~~ 133 (341)
T PRK06270 72 -----YPEGG----GEISGLEV-IRSVDADVVVEATPTNIETGEPALSHCRKALERGK--HVVTSNKG---PLAL---AY 133 (341)
T ss_pred -----Ccccc----ccCCHHHH-hhccCCCEEEECCcCcccccchHHHHHHHHHHCCC--EEEcCCcH---HHHh---hH
Confidence 00000 00122221 123468999999987554 567778889986 45554211 1100 11
Q ss_pred cCCC---CCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 206 DAYK---PDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 206 ~~y~---~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
+.+. ...++.=--.++...-.|+++.|.+..
T Consensus 134 ~eL~~~A~~~g~~~~~ea~v~~glPii~~l~~~l 167 (341)
T PRK06270 134 KELKELAKKNGVRFRYEATVGGAMPIINLAKETL 167 (341)
T ss_pred HHHHHHHHHcCCEEEEeeeeeechhHHHHHHhhc
Confidence 1111 111221112355666789999998765
No 51
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.36 E-value=0.00045 Score=60.30 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=53.9
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||+|+|+ ||+||.+++.+.+++ +++|+++-+....+.. .-|. |.+.+ .....+.++ .
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~v~~~~~~~~----g~d~--g~~~~-----------~~~~~~~v~--~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESP--GFELVGAVDRKPSAKV----GKDV--GELAG-----------IGPLGVPVT--D 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHST--TEEEEEEEETTTSTTT----TSBC--HHHCT-----------SST-SSBEB--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC--CcEEEEEEecCCcccc----cchh--hhhhC-----------cCCcccccc--h
Confidence 69999998 999999999999865 4999999875321110 0011 10000 000111221 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVI 187 (416)
+.+++ ...+|++||.|-.....+.++..++.|.+-|+
T Consensus 60 ~l~~~---~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~Vi 96 (124)
T PF01113_consen 60 DLEEL---LEEADVVIDFTNPDAVYDNLEYALKHGVPLVI 96 (124)
T ss_dssp -HHHH---TTH-SEEEEES-HHHHHHHHHHHHHHT-EEEE
T ss_pred hHHHh---cccCCEEEEcCChHHhHHHHHHHHhCCCCEEE
Confidence 22222 12489999999666666677777778875433
No 52
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.35 E-value=0.00047 Score=67.13 Aligned_cols=94 Identities=27% Similarity=0.317 Sum_probs=66.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
++|||+|+|+||+.+++.+.+.. .+++++++=|. +.+..-++. .+. .+. .
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~-~~~e~v~v~D~-~~ek~~~~~--~~~------------------~~~--------~ 50 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGR-VDFELVAVYDR-DEEKAKELE--ASV------------------GRR--------C 50 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCC-cceeEEEEecC-CHHHHHHHH--hhc------------------CCC--------c
Confidence 58999999999999999877542 35999999886 444444443 121 111 1
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+.+||-.-..+|+++||.+..--++..++.|++|..-+|+|-..
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGA 94 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGA 94 (255)
T ss_pred cccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechh
Confidence 11222112478999999999999999999999999877777654
No 53
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.27 E-value=0.00064 Score=66.80 Aligned_cols=95 Identities=22% Similarity=0.323 Sum_probs=60.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
|||+|+| +|++|+.+++.+.+.+ ++++|++-|..+++.. .+|. +.+.+. .. .| +.++ .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~--~~elvav~d~~~~~~~----~~~~--~~~~~~----~~-----~g--v~~~--~ 60 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE--GLQLVAAFERHGSSLQ----GTDA--GELAGI----GK-----VG--VPVT--D 60 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecCCcccc----CCCH--HHhcCc----Cc-----CC--ceee--C
Confidence 7999999 7999999999998764 4999999873222111 0010 110000 00 01 2222 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++.+ ...+|+|||+|......+.+...+++|.. ||+
T Consensus 61 d~~~l---~~~~DvVIdfT~p~~~~~~~~~al~~g~~-vVi 97 (266)
T TIGR00036 61 DLEAV---ETDPDVLIDFTTPEGVLNHLKFALEHGVR-LVV 97 (266)
T ss_pred CHHHh---cCCCCEEEECCChHHHHHHHHHHHHCCCC-EEE
Confidence 33333 13589999999998888999999999964 555
No 54
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.23 E-value=0.001 Score=65.17 Aligned_cols=92 Identities=25% Similarity=0.312 Sum_probs=61.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||.|+|+||+.+++.+.... .+++++++-|. +++....+.+ .+| ..++ .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~-~~~elv~v~d~-~~~~a~~~a~---~~~--------------------~~~~--~~ 54 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGR-INAELYAFYDR-NLEKAENLAS---KTG--------------------AKAC--LS 54 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCC-CCeEEEEEECC-CHHHHHHHHH---hcC--------------------CeeE--CC
Confidence 69999999999999999988653 14899998875 3433333221 010 0111 23
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+++. .++|+|++|++...-.+.+...+++|. .|++..+
T Consensus 55 ~~ell---~~~DvVvi~a~~~~~~~~~~~al~~Gk-~Vvv~s~ 93 (265)
T PRK13304 55 IDELV---EDVDLVVECASVNAVEEVVPKSLENGK-DVIIMSV 93 (265)
T ss_pred HHHHh---cCCCEEEEcCChHHHHHHHHHHHHcCC-CEEEEch
Confidence 33332 268999999999888888888899885 4555433
No 55
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.18 E-value=0.0014 Score=64.71 Aligned_cols=91 Identities=22% Similarity=0.247 Sum_probs=60.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|+|+||+.+++.+... .+++++++|-|. +++....+.+ .+|. .. . ..
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr-~~~~a~~~a~---~~g~----~~---------------~--~~ 59 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVR-DPQRHADFIW---GLRR----PP---------------P--VV 59 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECC-CHHHHHHHHH---hcCC----Cc---------------c--cC
Confidence 58999999999999999998763 134899999875 3333222211 0110 00 0 12
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++++- .++|+|++|++...-.+.+...+++|. .|++
T Consensus 60 ~~eell---~~~D~Vvi~tp~~~h~e~~~~aL~aGk-~Vi~ 96 (271)
T PRK13302 60 PLDQLA---THADIVVEAAPASVLRAIVEPVLAAGK-KAIV 96 (271)
T ss_pred CHHHHh---cCCCEEEECCCcHHHHHHHHHHHHcCC-cEEE
Confidence 233332 257999999999888899999999885 3444
No 56
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.16 E-value=0.0006 Score=71.31 Aligned_cols=95 Identities=26% Similarity=0.421 Sum_probs=57.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~ 140 (416)
++||||.|+|.||+.+++.+.++. ..+++|++|-+. +++.. .-+ . ..+
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~-~~~-------------~--------~~~-- 57 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD-RGV-------------D--------LPG-- 57 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc-cCC-------------C--------Ccc--
Confidence 689999999999999999886542 125899998764 22110 000 0 000
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCC-CCHhhHHHHHHcCCCEEEEcCC
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVF-VDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f-~s~~~a~~hl~aGAkkVIIsap 191 (416)
..++ .+++++ ..+.++|+|+||||.. ...+.....+++|. .||..++
T Consensus 58 ~~~~--~d~~~l-l~d~~iDvVve~tg~~~~~~~~~~~aL~~Gk-hVVtaNK 105 (426)
T PRK06349 58 ILLT--TDPEEL-VNDPDIDIVVELMGGIEPARELILKALEAGK-HVVTANK 105 (426)
T ss_pred ccee--CCHHHH-hhCCCCCEEEECCCCchHHHHHHHHHHHCCC-eEEEcCH
Confidence 0111 223222 1234789999999864 34677778888884 5554444
No 57
>PRK11579 putative oxidoreductase; Provisional
Probab=96.98 E-value=0.003 Score=63.55 Aligned_cols=93 Identities=25% Similarity=0.389 Sum_probs=62.7
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|.||+. .++.+...+ +++++||-|. +.+.++- +| + + ++++
T Consensus 4 ~irvgiiG~G~i~~~~~~~~~~~~~--~~~l~av~d~-~~~~~~~--~~----~-----------------~--~~~~-- 53 (346)
T PRK11579 4 KIRVGLIGYGYASKTFHAPLIAGTP--GLELAAVSSS-DATKVKA--DW----P-----------------T--VTVV-- 53 (346)
T ss_pred cceEEEECCCHHHHHHHHHHHhhCC--CCEEEEEECC-CHHHHHh--hC----C-----------------C--Ccee--
Confidence 589999999999985 566665543 4999999986 3333220 11 0 0 0111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ -.+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~vD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (346)
T PRK11579 54 SEPQHL-FNDPNIDLIVIPTPNDTHFPLAKAALEAG-KHVVVDKPF 97 (346)
T ss_pred CCHHHH-hcCCCCCEEEEcCCcHHHHHHHHHHHHCC-CeEEEeCCC
Confidence 122222 11237899999999999999999999999 578886664
No 58
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.95 E-value=0.0014 Score=63.99 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=57.5
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+|||+|+|+ |++|+.+++.+.+.+ ++++|++-|. +++..... + ...+.+ .
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~--~~elvav~d~-~~~~~~~~---~---------------------~~~i~~--~ 51 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAE--DLELVAAVDR-PGSPLVGQ---G---------------------ALGVAI--T 51 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEec-CCcccccc---C---------------------CCCccc--c
Confidence 379999996 999999999887654 4999998875 11111000 0 000111 1
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.+.+.+- .++|+|+|+|......+.+...+++|.. |++
T Consensus 52 ~dl~~ll---~~~DvVid~t~p~~~~~~~~~al~~G~~-vvi 89 (257)
T PRK00048 52 DDLEAVL---ADADVLIDFTTPEATLENLEFALEHGKP-LVI 89 (257)
T ss_pred CCHHHhc---cCCCEEEECCCHHHHHHHHHHHHHcCCC-EEE
Confidence 2232221 1589999999877778888999999974 444
No 59
>PRK08374 homoserine dehydrogenase; Provisional
Probab=96.92 E-value=0.0012 Score=67.23 Aligned_cols=166 Identities=22% Similarity=0.313 Sum_probs=84.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCCC-h---h--HHhhhhccccccccCCCceeeecCCe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGG-V---K--QASHLLKYDSTLGIFEADVKPVGTDG 133 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~~-~---~--~~a~LlkyDS~~G~f~~~v~~~~~~~ 133 (416)
|++||+|.|||.||+.+++.+.++. .-+++|++|.|... . + .+..+++|-..+|... .
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~---------~ 71 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS---------N 71 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh---------h
Confidence 6799999999999999999987632 12489999987310 0 0 0011111111111100 0
Q ss_pred EEECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCC
Q 014890 134 ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP 213 (416)
Q Consensus 134 i~v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~ 213 (416)
+.-+. .. ...++.++ +.+..+|+|||+|+.....+...+.++.|. -|+++. |......-..+..-.-....+
T Consensus 72 ~~~~~---~~-~~~~~~el-l~~~~~DVvVd~t~~~~a~~~~~~al~~G~--~VVtan-K~~la~~~~el~~la~~~~~~ 143 (336)
T PRK08374 72 WGNDY---EV-YNFSPEEI-VEEIDADIVVDVTNDKNAHEWHLEALKEGK--SVVTSN-KPPIAFHYDELLDLANERNLP 143 (336)
T ss_pred ccccc---cc-cCCCHHHH-HhcCCCCEEEECCCcHHHHHHHHHHHhhCC--cEEECC-HHHHHhCHHHHHHHHHHcCCe
Confidence 00000 00 00012222 234578999999998777777778888887 344432 210000000010000001122
Q ss_pred eEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 214 IISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 214 IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
+.- +.+.-.=.|+++.|.+.+ ..++| ..+.||-.|+
T Consensus 144 ~~~--ea~v~~GiPii~~l~~~l---~g~~i-~~i~GIlnGT 179 (336)
T PRK08374 144 YLF--EATVMAGTPIIGLLRENL---LGDTV-KRIEAVVNAT 179 (336)
T ss_pred EEE--eccccccCCchHHHHhhc---cccce-EEEEEEEech
Confidence 331 334445689999998766 34554 5566777774
No 60
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.86 E-value=0.0019 Score=54.34 Aligned_cols=95 Identities=34% Similarity=0.426 Sum_probs=66.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
|||||+|+|.+|+..++.+.... +++++++|-|. +++......+ .+|- . .+ .+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~-~~~~~~~~~~---~~~~---~-----------------~~--~~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDP-DPERAEAFAE---KYGI---P-----------------VY--TD 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECS-SHHHHHHHHH---HTTS---E-----------------EE--SS
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeC-CHHHHHHHHH---Hhcc---c-----------------ch--hH
Confidence 69999999999999999998873 45999999987 4433322211 1110 0 11 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+++ ..+.++|+|+-||+...-.+.+...+++|. .|++.-|-
T Consensus 54 ~~~l-l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~-~v~~EKP~ 95 (120)
T PF01408_consen 54 LEEL-LADEDVDAVIIATPPSSHAEIAKKALEAGK-HVLVEKPL 95 (120)
T ss_dssp HHHH-HHHTTESEEEEESSGGGHHHHHHHHHHTTS-EEEEESSS
T ss_pred HHHH-HHhhcCCEEEEecCCcchHHHHHHHHHcCC-EEEEEcCC
Confidence 2222 112378999999999999999999999998 78887664
No 61
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.72 E-value=0.0045 Score=63.00 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=79.4
Q ss_pred eeEEEEccChhHHHHHHHHHhC-----CCCCceEEEEecCCC----hh--HHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGR-----KDSPLEVVAINDTGG----VK--QASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~-----~~~~~~vVaINd~~~----~~--~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
|||+|.|||.||+.+++.+.++ ..-+++||+|-|... ++ .+..+++|-.. |. + .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~------------l--~ 65 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GR------------L--E 65 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-Cc------------c--c
Confidence 4899999999999999998774 113589999987411 00 00111111000 10 0 0
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcCCCCCCC----HhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC---C
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVD----REGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK---P 210 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s----~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~---~ 210 (416)
..... .-++.++ + +...|+|||||+...+ .+..+..+++|. -||++. |. |+-.. .+.+. .
T Consensus 66 ~~~~~---~~~~~~l-l-~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~--hVVTaN-Kg--alA~~---~~eL~~lA~ 132 (326)
T PRK06392 66 EIDYE---KIKFDEI-F-EIKPDVIVDVTPASKDGIREKNLYINAFEHGI--DVVTAN-KS--GLANH---WHDIMDSAS 132 (326)
T ss_pred cCCCC---cCCHHHH-h-cCCCCEEEECCCCCCcCchHHHHHHHHHHCCC--EEEcCC-HH--HHHhh---HHHHHHHHH
Confidence 00000 0011111 1 2468999999975322 234467788887 566654 32 22111 11111 1
Q ss_pred CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 211 DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
.++.-=--..|.-+=.|+++.|+... ..++| ..+.||-.|+
T Consensus 133 ~~g~~~~~eatV~~g~Pii~~~~~~~---~g~~i-~~i~GilnGT 173 (326)
T PRK06392 133 KNRRIIRYEATVAGGVPLFSLRDYST---LPSRI-KNFRGIVSST 173 (326)
T ss_pred HcCCeEEEeeeeeeccchhhhhhhhc---ccCCE-EEEEEEEeCh
Confidence 11111111345566789999996544 33443 5556777774
No 62
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.70 E-value=0.0027 Score=65.10 Aligned_cols=163 Identities=16% Similarity=0.249 Sum_probs=81.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEecCCChhHHhhhhcccccccc-CCCceeeecCCeEEECC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAINDTGGVKQASHLLKYDSTLGI-FEADVKPVGTDGISVDG 138 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~i~v~G 138 (416)
|+++|+|.|||.||+.+++.+.++. .-+++|++|-+... .+ |+. .|- ++.-++ .......+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~-----~~--~~~-~gi~~~~~l~-~~~~~~~~~- 70 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNV-----AI--HNE-DGLSIHHLLR-YGGGSCAIE- 70 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecch-----hh--ccc-cCCChhhhhh-ccccccchh-
Confidence 5689999999999999999987542 12588888865310 01 111 010 000000 000000000
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCCCCC-----CCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC---C
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVF-----VDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK---P 210 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f-----~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~---~ 210 (416)
... ..++.++--....+|+|||||+.- ...++....|++|. -|||+. |. |+--.+ +.+. .
T Consensus 71 ---~~~-~~~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~--hVVTAN-K~--~la~~~---~eL~~lA~ 138 (346)
T PRK06813 71 ---KYI-EHHPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKM--DIVAIS-KG--ALVTNW---REINEAAK 138 (346)
T ss_pred ---hhh-ccChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCC--eEEcCC-cH--HHhccH---HHHHHHHH
Confidence 000 011111100123689999998653 33455567788887 577765 32 211111 1111 1
Q ss_pred CCCeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 211 DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
.++.-=--.+|.-+=.|+++.|+..+ ..++| ..+.||-.|+
T Consensus 139 ~~g~~~~yEasVggGiPiI~~l~~~~---~g~~I-~~i~GIlNGT 179 (346)
T PRK06813 139 IANVRIRYSGATAAALPTLDIGQFSL---AGCHI-EKIEGILNGT 179 (346)
T ss_pred HcCCeEEEeeeeeeccchHHHHhhhc---ccCcE-EEEEEEEech
Confidence 11111112345556789999996544 34444 4556777764
No 63
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.005 Score=63.00 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=79.8
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCC-------CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKD-------SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~-------~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G 138 (416)
+|++||+|.|||.||+.++|.+.++++ -+++|++|-+. +.... + .+|-. +.... ..+..+.
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~-~~~~~-~--~~~~~----~~~~~-~~~~~~~--- 68 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADR-DGSLV-R--DLDLL----NAEVW-TTDGALS--- 68 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEec-cchhc-c--ccccc----chhhh-eeccccc---
Confidence 367999999999999999999987532 25888888764 11000 0 01110 00000 0000000
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCCCC-CCCHh---hHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCC--
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGV-FVDRE---GAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-- 212 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~TG~-f~s~~---~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~-- 212 (416)
.. ..+-+ ...+|+|+|++|. ..+.+ ...+.++.|- -|+|+- |. |+=..+-.-..+....
T Consensus 69 --------~~-~~~~~-~~~~dvvve~~~~d~~~~~~~~~~~~al~~Gk--hVVTaN-K~--~lA~~~~el~~~A~~~g~ 133 (333)
T COG0460 69 --------LG-DEVLL-DEDIDVVVELVGGDVEPAEPADLYLKALENGK--HVVTAN-KA--LLALHYHELREAAEKNGV 133 (333)
T ss_pred --------cc-Hhhhc-cccCCEEEecCcccCCchhhHHHHHHHHHcCC--eEECCC-ch--HhHhhHHHHHHHHHHhCC
Confidence 00 11212 3478999999998 33333 4456666665 677754 32 1111100000010000
Q ss_pred CeEecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 213 PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 213 ~IISnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
.+-= --|.-+=.|+++.|.+.. ..++ +..+.||..|+
T Consensus 134 ~l~y--EAtV~gGiPiI~~lr~~l---~g~~-I~~i~GIlNGT 170 (333)
T COG0460 134 KLLY--EATVGGGIPIIKLLRELL---AGDE-ILSIRGILNGT 170 (333)
T ss_pred eEEE--EeeeccCcchHHHHHhhc---ccCc-eEEEEEEEecc
Confidence 1110 112334479999999887 2344 34556777774
No 64
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.013 Score=58.16 Aligned_cols=140 Identities=22% Similarity=0.229 Sum_probs=78.8
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEE-ECCEEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGIS-VDGKVIQVV 144 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~-v~G~~I~v~ 144 (416)
|+|||+|+| .||.||++++++.+.+ ++++++.=+..+.. ..|+ +.+.+. ++-..+.+.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~--~~~L~aa~~~~~~~----------~~g~--------d~ge~~g~~~~gv~v~ 60 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAP--DLELVAAFDRPGSL----------SLGS--------DAGELAGLGLLGVPVT 60 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCC--CceEEEEEecCCcc----------cccc--------chhhhccccccCceee
Confidence 458999999 5999999999999875 49998887631110 0111 111110 111122332
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeE--ecCCcch
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPII--SNASCTT 222 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~II--SnaSCTT 222 (416)
. + +.-.....|++||=|-...+.+.++..++.|.+-||=|...+++.-. .-+.+....+++ .|-|=-.
T Consensus 61 ~--~---~~~~~~~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~-----~l~~~a~~v~vv~a~NfSiGv 130 (266)
T COG0289 61 D--D---LLLVKADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLE-----KLREAAEKVPVVIAPNFSLGV 130 (266)
T ss_pred c--c---hhhcccCCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHH-----HHHHHHhhCCEEEeccchHHH
Confidence 1 1 11234578999999888888888888889997666555544331100 001111123444 3444445
Q ss_pred hhhHHHHHHHHHHh
Q 014890 223 NCLAPFVKVLDQKF 236 (416)
Q Consensus 223 n~Lap~lkvL~~~f 236 (416)
|-|.-+++-.-+.|
T Consensus 131 nll~~l~~~aak~l 144 (266)
T COG0289 131 NLLFKLAEQAAKVL 144 (266)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555555
No 65
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=96.35 E-value=0.022 Score=56.45 Aligned_cols=285 Identities=20% Similarity=0.234 Sum_probs=140.5
Q ss_pred cccccccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCE
Q 014890 61 RKVAAQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 139 (416)
Q Consensus 61 ~~~~~~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~ 139 (416)
.++..+.++|||..| -|--|+++.|.+-.. +.+||..+..- +..-.-|+ +-++ . ++. ...+..
T Consensus 12 ~~~~~~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssr---el~Gqkl~-~ytk--~--eiq---y~~lst--- 75 (340)
T KOG4354|consen 12 SSVKPEKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSR---ELAGQKLE-VYTK--L--EIQ---YADLST--- 75 (340)
T ss_pred cccccCCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehh---hhcCCccc-Ccch--h--hee---ecccch---
Confidence 345667789999999 699999999987765 45887666531 00001111 1111 0 000 011111
Q ss_pred EEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCC--eEEeec---Ccc-CCCCCC
Q 014890 140 VIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIP--TYVVGV---NAD-AYKPDE 212 (416)
Q Consensus 140 ~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~p--tvV~gV---N~~-~y~~~~ 212 (416)
.|...+. ...-+|..+.+-+.-+-+.+...--.+--|-+||+-..+- -.| -.+||. |+. +++ ..
T Consensus 76 -------~D~~kle-e~~avd~wvmaLPn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-na 146 (340)
T KOG4354|consen 76 -------VDAVKLE-EPHAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-NA 146 (340)
T ss_pred -------hhHHHhh-cCCceeeeeeecchhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-hh
Confidence 1111110 0124565566655544444444333344556788665421 134 667664 533 333 35
Q ss_pred CeEecCCcchh----hhHHHHHHHHHHhhhhccccccccccceeEEEEEeecccccchhhhccchhHHHhhhcccccccc
Q 014890 213 PIISNASCTTN----CLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVP 288 (416)
Q Consensus 213 ~IISnaSCTTn----~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD~~~~d~rr~Raaa~NIIP 288 (416)
+.|+||.|-.+ .|.|++|.++-+- + +-.+--|+|...--. +..|+ .-.++|+||
T Consensus 147 ~~iaNPGCYaTgsQl~l~Pllk~i~g~p----------------~--ifgvSGySGAGtkps-pkNd~---~~l~nnlip 204 (340)
T KOG4354|consen 147 RLIANPGCYATGSQLPLVPLLKAILGKP----------------E--IFGVSGYSGAGTKPS-PKNDY---SELANNLIP 204 (340)
T ss_pred hhccCCCcccccCcccchHHHHHhcCCc----------------c--eeeeccccCCCCCCC-CccCH---HHHhcCCcc
Confidence 68999999554 3678888775322 1 112234555522111 11232 236899999
Q ss_pred CCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccc-cCCCcccccCCCeeeeccC
Q 014890 289 TSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFR 367 (416)
Q Consensus 289 t~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~-~lkgil~~~~~p~VS~Df~ 367 (416)
-.-.--..+..+=-.++-.+.-+---.|-+.|-...+++.+++.++.||+++.++..-++ +|--+++ |-|+| -|..
T Consensus 205 Y~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmkksv~~~elr~lyk~~YedE~lvhV~d--dvPlv-kdv~ 281 (340)
T KOG4354|consen 205 YGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMKKSVRTEELRQLYKTSYEDEELVHVLD--DVPLV-KDVR 281 (340)
T ss_pred ccccccchhHhHHHhhCCceeechhHHHHhhhceEEEEEeecCcccHHHHHHHHHhhccCcceeeeec--cccce-eccC
Confidence 752111112211111111111111112333444456788899999999999999986554 3433332 34555 4566
Q ss_pred CCCcceeeeCCCCcccCCceEEEEEEecCC
Q 014890 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397 (416)
Q Consensus 368 g~~~S~i~D~~~t~v~~~~~vK~~~WyDNE 397 (416)
|.-+- .+-.---. ..++-+-|++=-||-
T Consensus 282 gsh~v-~~ggF~~~-~~g~Ravii~tIDNL 309 (340)
T KOG4354|consen 282 GSHYV-HMGGFPDR-IPGDRAVIISTIDNL 309 (340)
T ss_pred Cccee-EeccccCC-CCCceEEEEEehhhh
Confidence 64332 22111111 122334466667764
No 66
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.28 E-value=0.051 Score=52.53 Aligned_cols=35 Identities=40% Similarity=0.624 Sum_probs=31.1
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+.+||+|-|||.||+.+++.|.+.. ..||+|.|.
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g---~~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAG---AKVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECC
Confidence 35689999999999999999998864 899999985
No 67
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.16 E-value=0.025 Score=60.08 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=63.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec----------CCChhHHhhhhcccccc-ccCCCceeeecCCeEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND----------TGGVKQASHLLKYDSTL-GIFEADVKPVGTDGIS 135 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd----------~~~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~ 135 (416)
...||+|-|||.||+.+++.|.+.. ..||+|.| + +++ .|++|--.+ |.... ..+..
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~G---akVVavsDs~G~iyn~~GL-D~~---~L~~~k~~~~~~l~~----~~~~~-- 297 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQLG---AKVVTCSDSSGYVYDEEGI-DLE---KLKEIKEVRRGRISE----YAEEF-- 297 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCC-CHH---HHHHHHHhcCCchhh----hhhhc--
Confidence 3579999999999999999998875 89999988 3 333 334332211 22111 10000
Q ss_pred ECCEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEE
Q 014890 136 VDGKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 136 v~G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVII 188 (416)
+.+. -+++.+ | ...+||.+.|+ +.-++.+.+.++.+.+|| +|+
T Consensus 298 -~~~~------i~~~~i-~-~~d~DVliPaAl~n~It~~~a~~i~~~~ak-iIv 341 (445)
T PRK09414 298 -GAEY------LEGGSP-W-SVPCDIALPCATQNELDEEDAKTLIANGVK-AVA 341 (445)
T ss_pred -CCee------cCCccc-c-ccCCcEEEecCCcCcCCHHHHHHHHHcCCe-EEE
Confidence 0111 122222 5 35899999996 677788999999887884 444
No 68
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.08 E-value=0.061 Score=51.70 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
+..||+|-|||.+|+.+++.|.+.. ..+|+|.|.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G---~~vV~vsD~ 55 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEG---GKVLAVSDP 55 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 4679999999999999999999875 789999996
No 69
>PRK10206 putative oxidoreductase; Provisional
Probab=95.92 E-value=0.02 Score=58.01 Aligned_cols=96 Identities=25% Similarity=0.278 Sum_probs=61.8
Q ss_pred ceeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
++||||.|+|+|++. .++.+.... +.++|+||-|. +.+.....-+| | + ++++
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~-~~~~l~av~d~-~~~~~~~~~~~----~-----------------~--~~~~-- 53 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRK-DSWHVAHIFRR-HAKPEEQAPIY----S-----------------H--IHFT-- 53 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCC-CCEEEEEEEcC-ChhHHHHHHhc----C-----------------C--Cccc--
Confidence 479999999998853 466664432 34999999986 22221111111 1 0 0111
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ ..+.++|+|+-||+...-.+.+...+++| |.|++--|-
T Consensus 54 ~~~~el-l~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~EKPl 97 (344)
T PRK10206 54 SDLDEV-LNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLVEKPF 97 (344)
T ss_pred CCHHHH-hcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEEecCC
Confidence 112221 12347899999999999999999999999 678886664
No 70
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.86 E-value=0.0034 Score=53.49 Aligned_cols=87 Identities=28% Similarity=0.329 Sum_probs=48.4
Q ss_pred ccChhHHHHHHHHHhCCCC-CceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCC-C
Q 014890 75 GFGRIGRNFLRCWHGRKDS-PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVN-L 152 (416)
Q Consensus 75 GfGrIGR~vlr~l~~~~~~-~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~-i 152 (416)
|||.||+.+++.+.++... +++|++|-+... ++..+. . . ...+.... .+.++ +
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~------~~~~~~-------~-~-~~~~~~~~----------~~~~~~~ 55 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSM------LISKDW-------A-A-SFPDEAFT----------TDLEELI 55 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSE------EEETTH-------H-H-HHTHSCEE----------SSHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCc------hhhhhh-------h-h-hccccccc----------CCHHHHh
Confidence 8999999999999876421 489999977520 000000 0 0 00000000 11111 1
Q ss_pred CCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 153 PWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 153 ~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
.| ..+|+|||||+.....+..+..+++|. =||++
T Consensus 56 ~~--~~~dvvVE~t~~~~~~~~~~~~L~~G~--~VVt~ 89 (117)
T PF03447_consen 56 DD--PDIDVVVECTSSEAVAEYYEKALERGK--HVVTA 89 (117)
T ss_dssp TH--TT-SEEEE-SSCHHHHHHHHHHHHTTC--EEEES
T ss_pred cC--cCCCEEEECCCchHHHHHHHHHHHCCC--eEEEE
Confidence 11 168999999999888888888899987 44554
No 71
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.83 E-value=0.029 Score=58.50 Aligned_cols=111 Identities=19% Similarity=0.250 Sum_probs=65.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCC---eE--EECCEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD---GI--SVDGKVI 141 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~---~i--~v~G~~I 141 (416)
.||+|.| +|.||++.|+++...++ .++|+++---.+++.+..+.+ |...| +-+.++. .+ .+.+..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~-~f~VvaLaa~~n~~~l~~q~~~f~p~~------v~i~~~~~~~~l~~~l~~~~~ 74 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPD-RFRVVALSAGKNVELLAEQAREFRPKY------VVVADEEAAKELKEALAAAGI 74 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcc-ccEEEEEEcCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHhhccCCc
Confidence 4899999 99999999999876543 599999973225554444432 22211 1100100 00 0011113
Q ss_pred EEEeccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 142 QVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 142 ~v~~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+++...+ ..++- ...++|+|+.+++.+...+..-..+++| |+|.+
T Consensus 75 ~v~~G~~~~~~l~-~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aG-K~VaL 120 (385)
T PRK05447 75 EVLAGEEGLCELA-ALPEADVVVAAIVGAAGLLPTLAAIRAG-KRIAL 120 (385)
T ss_pred eEEEChhHHHHHh-cCCCCCEEEEeCcCcccHHHHHHHHHCC-CcEEE
Confidence 3333221 11110 1226899999999999998888899999 55655
No 72
>PLN02775 Probable dihydrodipicolinate reductase
Probab=95.54 E-value=0.045 Score=55.03 Aligned_cols=140 Identities=15% Similarity=0.159 Sum_probs=78.9
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
.+.+||.||| .||+|+.+.+++.. ++ |++|+.-|.... -++-.+.+.|..+++.
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~-~~--~~Lv~~~~~~~~----------------------~~~~~~~~~g~~v~~~ 63 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVS-AG--LQLVPVSFTGPA----------------------GVGVTVEVCGVEVRLV 63 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhc-CC--CEEEEEeccccc----------------------cccccceeccceeeee
Confidence 3568999999 79999999999988 43 999987654110 0011123445466665
Q ss_pred eccCCCCC--CCCCcccc-EEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeE--ecCC
Q 014890 145 SNRNPVNL--PWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPII--SNAS 219 (416)
Q Consensus 145 ~~~~p~~i--~W~~~gvD-iVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~II--SnaS 219 (416)
...|.+.. .-+....| ++||=|-.....+.+...++.|.+-||=|..-.++ ......-.+.-+++ .|-|
T Consensus 64 ~~~dl~~~l~~~~~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e------~l~~~~~~~~i~vv~apNfS 137 (286)
T PLN02775 64 GPSEREAVLSSVKAEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRD------RLLKDVEESGVYAVIAPQMG 137 (286)
T ss_pred cCccHHHHHHHhhccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHH------HHHHHHhcCCccEEEECccc
Confidence 22222221 00111468 89997777777777778888898665544433222 11111111223444 4444
Q ss_pred cchhhhHHHHHHHHHHh
Q 014890 220 CTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f 236 (416)
=-.|-|.-+++.+-+.|
T Consensus 138 iGv~ll~~l~~~aA~~l 154 (286)
T PLN02775 138 KQVVAFQAAMEIMAEQF 154 (286)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45555555555555555
No 73
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.44 E-value=0.05 Score=53.64 Aligned_cols=98 Identities=28% Similarity=0.295 Sum_probs=63.9
Q ss_pred cceeEEEEccChhHH-HHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 67 AKLKVAINGFGRIGR-NFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 67 m~ikVaINGfGrIGR-~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+++||||.|.|.|++ ..+..+...++. +++|+|-|. +++.+..+. ..||.- +.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~-~~~vav~d~-~~~~a~~~a---~~~~~~-------------------~~~- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGG-LELVAVVDR-DPERAEAFA---EEFGIA-------------------KAY- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCc-eEEEEEecC-CHHHHHHHH---HHcCCC-------------------ccc-
Confidence 579999999997764 577777765422 799999876 444333222 112110 000
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.+.+++ -.+..+|+|+=||+...-.+.+.+.|++|. .|++--|-
T Consensus 57 -~~~~~l-l~~~~iD~V~Iatp~~~H~e~~~~AL~aGk-hVl~EKPl 100 (342)
T COG0673 57 -TDLEEL-LADPDIDAVYIATPNALHAELALAALEAGK-HVLCEKPL 100 (342)
T ss_pred -CCHHHH-hcCCCCCEEEEcCCChhhHHHHHHHHhcCC-EEEEcCCC
Confidence 111111 012258999999999999999999999997 68886664
No 74
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.02 E-value=0.17 Score=54.01 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=67.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCC--------eEEEC
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD--------GISVD 137 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~--------~i~v~ 137 (416)
+.||+|.| +|-||.+.|+.+...++ +|+|+++.--.+.+.++...+ |...| +- +.+. .+ .
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd-~f~vvaLaag~Ni~lL~~q~~~f~p~~------v~-v~d~~~~~~l~~~l--~ 126 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPD-KFKVVALAAGSNVTLLADQVRKFKPKL------VA-VRNESLVDELKEAL--A 126 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCcc-ccEEEEEECCCCHHHHHHHHHHhCCCE------EE-EcCHHHHHHHHHhh--c
Confidence 46999999 79999999999887653 599999977556666655332 22211 11 1110 01 1
Q ss_pred CE--EEEEEec-cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 138 GK--VIQVVSN-RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 138 G~--~I~v~~~-~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
|. .++++.. ....++- ....+|+|+.+.+.+....-.-..+++| |+|.+.
T Consensus 127 ~~~~~~~vl~G~egl~~la-~~~evDiVV~AIvG~aGL~pTl~AIkaG-K~VALA 179 (454)
T PLN02696 127 DLDDKPEIIPGEEGIVEVA-RHPEAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 179 (454)
T ss_pred CCCCCcEEEECHHHHHHHH-cCCCCCEEEEeCccccchHHHHHHHHCC-CcEEEe
Confidence 10 1233321 1111110 1126899999999998887777888999 566553
No 75
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.96 E-value=0.052 Score=53.37 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=88.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC------C--CCceEEEEe-cCCChhHHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK------D--SPLEVVAIN-DTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~------~--~~~~vVaIN-d~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
.+.||.|.|.|-+|-.+++.|.... . ..++|+.+- |..+...+-.-+-+++.-|+.+.++- ...--.++
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~--~~ri~~~~ 87 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVL--VNRLNQAM 87 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHH--HHHHHhcc
Confidence 4679999999999999999987531 0 013555554 33344444433334555677665432 11111122
Q ss_pred CEEEEEEecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC--CEEEEcCCC----------------CCCCCe
Q 014890 138 GKVIQVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA--KKVLITAPG----------------KGDIPT 198 (416)
Q Consensus 138 G~~I~v~~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA--kkVIIsaps----------------kd~~pt 198 (416)
|..|....++ ++.++ ..+.|+||+|+..+.+|......+..+- .+..|++.. +.....
T Consensus 88 ~~~i~a~~~~~~~~~~---~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~ 164 (244)
T TIGR03736 88 GTDWTAHPERVERSST---LHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGENRL 164 (244)
T ss_pred CceEEEEEeeeCchhh---hcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCCce
Confidence 4334433322 12222 1378999999999988876644443211 122333222 334566
Q ss_pred EEeecCcc---CCCCC-CCeEecCCcch-----------hh--hHHHHHHHHHHh
Q 014890 199 YVVGVNAD---AYKPD-EPIISNASCTT-----------NC--LAPFVKVLDQKF 236 (416)
Q Consensus 199 vV~gVN~~---~y~~~-~~IISnaSCTT-----------n~--Lap~lkvL~~~f 236 (416)
++|.+-+. .+++. +.=-+.||||. |. -......|.+.|
T Consensus 165 ~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf 219 (244)
T TIGR03736 165 RLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLF 219 (244)
T ss_pred ecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence 77766532 23331 12237899973 22 234566777777
No 76
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=94.93 E-value=0.11 Score=51.45 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=64.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhcccccccc-CCCceeeecCCeEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGI-FEADVKPVGTDGISV 136 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~i~v 136 (416)
...||+|-|||.||+.+++.|.+.. ..||+|.|. .+++.+..|++|+..++. ...-. ..+
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~G---akvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~-------~~~ 106 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLELG---AKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYA-------KKY 106 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHh-------hcC
Confidence 3579999999999999999998875 899999882 134555555554432221 00000 001
Q ss_pred CCEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCEEEE
Q 014890 137 DGKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 137 ~G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.| -+.. +++++ | ...+||.+=| ++.-++.+.+++-.+.+|| +|+
T Consensus 107 ~~--a~~~---~~~~~-~-~~~~DIliPcAl~~~I~~~na~~i~~~~ak-~I~ 151 (254)
T cd05313 107 GT--AKYF---EGKKP-W-EVPCDIAFPCATQNEVDAEDAKLLVKNGCK-YVA 151 (254)
T ss_pred CC--CEEe---CCcch-h-cCCCcEEEeccccccCCHHHHHHHHHcCCE-EEE
Confidence 11 0111 23332 4 3578988876 5777888888877666774 444
No 77
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.75 E-value=0.042 Score=50.52 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=29.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG 105 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~ 105 (416)
..+|||.|||+|||.+++.+.... ++|++.+....
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~~~~ 70 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFG---MRVIGYDRSPK 70 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT----EEEEEESSCH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCC---ceeEEecccCC
Confidence 468999999999999999998875 89999987533
No 78
>PLN02700 homoserine dehydrogenase family protein
Probab=94.68 E-value=0.081 Score=55.12 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred ccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhh
Q 014890 159 IDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVT 238 (416)
Q Consensus 159 vDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~ 238 (416)
-+++||||+.....+..+..+++|. -|||+. |. |.-...=-...+.. ++.-=--.+|.-+=.|++..|.+.+
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~--hVVTaN-K~--~~a~~~~~~~~la~-~~~~~~yEatVgaGlPiI~tl~~ll-- 181 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGC--CIVLAN-KK--PLTSTLEDYDKLAA-HPRRIRHESTVGAGLPVIASLNRIL-- 181 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCC--eEEcCC-ch--HhccCHHHHHHHHH-cCCeEEEEeeeeeccchHHHHHHHh--
Confidence 4899999998666677788899998 567654 32 11111000011110 1111112456666799999998876
Q ss_pred hccccccccccceeEEE
Q 014890 239 QLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 239 ~~~~~~~~~~~GI~~~~ 255 (416)
...++| ..+.||-.|+
T Consensus 182 ~sGd~I-~~I~GIlnGT 197 (377)
T PLN02700 182 SSGDPV-HRIVGSLSGT 197 (377)
T ss_pred hccCCE-EEEEEEEeCh
Confidence 112343 4445666664
No 79
>PLN02477 glutamate dehydrogenase
Probab=94.54 E-value=0.32 Score=51.31 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..||+|-|||.||+.+++.|.+.. ..||||.|.
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~e~G---akVVaVsD~ 238 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIHEKG---GKIVAVSDI 238 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEECC
Confidence 579999999999999999998875 899999985
No 80
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.34 E-value=0.086 Score=50.70 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=60.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc--cccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK--YDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk--yDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
|++.|+|.|++|+.+++.|.+++ .+|++|-+ +.+.+...++ +|. ..+..++....++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g---~~Vv~Id~--d~~~~~~~~~~~~~~--------------~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG---HNVVLIDR--DEERVEEFLADELDT--------------HVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC---CceEEEEc--CHHHHHHHhhhhcce--------------EEEEecCCCHHHHHh
Confidence 58999999999999999999885 57888875 2333222221 221 112222222222221
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCH-hhHHHHHH-cCCCEEEEcCCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDR-EGAGKHIQ-AGAKKVLITAPGK 193 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~-~~a~~hl~-aGAkkVIIsapsk 193 (416)
. +-..+|+|+-+||.-... --+..+++ .|+++||.-+.+.
T Consensus 62 -----a--gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 62 -----A--GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -----c--CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 1 123679999999984433 34445545 6899988776653
No 81
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.05 E-value=0.18 Score=49.01 Aligned_cols=135 Identities=27% Similarity=0.337 Sum_probs=81.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce---EEEEec-CCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE---VVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~---vVaINd-~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+.||+|.|.|.||.-++--++... ..+| .|+|.- ...+...+.| --.++|- + +.| +
T Consensus 4 k~kvaiigsgni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarl-gv~tt~e-----------g---v~~----l 63 (310)
T COG4569 4 KRKVAIIGSGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARL-GVATTHE-----------G---VIG----L 63 (310)
T ss_pred cceEEEEccCcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHhc-CCcchhh-----------H---HHH----H
Confidence 579999999999987765555442 2243 344432 2123333322 1122220 0 001 1
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccC-CCC-CCCeEecCCcc
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKP-DEPIISNASCT 221 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~-y~~-~~~IISnaSCT 221 (416)
+ +-|+ +.++|+|||+|..+..++.|++..++|.+- |+-....--|-+|+-+|-+. .+. .-+.| .|-
T Consensus 64 l--~~p~-----~~di~lvfdatsa~~h~~~a~~~ae~gi~~--idltpaaigp~vvp~~n~~eh~~a~nvnmv---tcg 131 (310)
T COG4569 64 L--NMPE-----FADIDLVFDATSAGAHVKNAAALAEAGIRL--IDLTPAAIGPYVVPVVNLEEHVDALNVNMV---TCG 131 (310)
T ss_pred H--hCCC-----CCCcceEEeccccchhhcchHhHHhcCCce--eecchhccCCeeccccchHHhcCCCCcceE---eec
Confidence 1 1232 247899999999999999999999999954 54433223689999999875 332 23455 466
Q ss_pred hhhhHHHHHHHHH
Q 014890 222 TNCLAPFVKVLDQ 234 (416)
Q Consensus 222 Tn~Lap~lkvL~~ 234 (416)
..+-.|++....+
T Consensus 132 gqatipiv~avsr 144 (310)
T COG4569 132 GQATIPIVAAVSR 144 (310)
T ss_pred Ccccchhhhhhhh
Confidence 6666677666544
No 82
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=93.98 E-value=0.12 Score=51.87 Aligned_cols=94 Identities=18% Similarity=0.156 Sum_probs=57.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||.||| .|++||.+.+++.. + +|++|+.. + |..+ ..++...+.|..|++....
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~--~~~Lv~~~-~------------~~~~---------~~~~~~~~~g~~v~v~~~~ 55 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-A--GLEIVPTS-F------------GGEE---------EAENEAEVAGKEILLHGPS 55 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-C--CCEEEeeE-c------------cccc---------cccchhhhcccceeeeccc
Confidence 5899999 89999999999877 3 39998752 1 2110 1112222444455663211
Q ss_pred ----CCCCCCCCCcccc-EEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 148 ----NPVNLPWGDLGID-LVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 148 ----~p~~i~W~~~gvD-iVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+++.+- +...| ++||=|-.....+.+...++.|..-|+=|
T Consensus 56 ~~~~~l~~~~--~~~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGT 100 (275)
T TIGR02130 56 EREARIGEVF--AKYPELICIDYTHPSAVNDNAAFYGKHGIPFVMGT 100 (275)
T ss_pred cccccHHHHH--hhcCCEEEEECCChHHHHHHHHHHHHCCCCEEEcC
Confidence 122221 11267 99998777777778888888888554433
No 83
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.71 E-value=0.14 Score=53.23 Aligned_cols=92 Identities=29% Similarity=0.392 Sum_probs=52.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeec-----CCeEEECCEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG-----TDGISVDGKVI 141 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~-----~~~i~v~G~~I 141 (416)
.++|||..|.|..|+-++-.....+ .|++|||.|. .++..- ..||..++.-..-++ .. .+.|. .| +|
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~--Gm~vvaisd~-~~~~ak--~A~~~ag~~~~~~~e-~~~~s~~a~Ai~-aG-Ki 87 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMP--GMEVVAISDR-NLDAAK--RAYDRAGGPKIEAVE-ADDASKMADAIE-AG-KI 87 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcC--CceEEEEecc-cchHHH--HHHHHhcCCcccccc-cchhhHHHHHHh-cC-cE
Confidence 5699999999999999988877554 4999999995 222221 124655544221111 10 00011 12 12
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCC
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVF 169 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f 169 (416)
.+.. |.+ +-.....+|++||+||.-
T Consensus 88 ~vT~--D~~-~i~~~~~IdvIIdATG~p 112 (438)
T COG4091 88 AVTD--DAE-LIIANDLIDVIIDATGVP 112 (438)
T ss_pred EEec--chh-hhhcCCcceEEEEcCCCc
Confidence 3321 111 112334799999999974
No 84
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.69 E-value=0.15 Score=48.35 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=61.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+.||+|.|.|.+|+.+++.+... ...++++++=|. +++.. | .. ++|.++ ....
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~-~~g~~ivgv~D~-d~~~~----------~-----------~~--i~g~~v--~~~~ 136 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFE-KRGFKIVAAFDV-DPEKI----------G-----------TK--IGGIPV--YHID 136 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcc-cCCcEEEEEEEC-Chhhc----------C-----------CE--eCCeEE--cCHH
Confidence 46999999999999999864322 235899988664 22111 1 00 223222 2212
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
+..++ ..+.++|+|+-|++.....+-+..-+++|.+.|+.-.|-
T Consensus 137 ~l~~l-i~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 137 ELEEV-VKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHHH-HHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 22222 134579999999998777776777888998877665554
No 85
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=93.65 E-value=0.32 Score=51.93 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=65.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---------ChhHHhhhhcccccc-ccCCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTL-GIFEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---------~~~~~a~LlkyDS~~-G~f~~~v~~~~~~~i~v~ 137 (416)
..||+|-|||.+|+..++.|.+.. ..||+|.|.. +++.+.+|++|-..+ |+... ..+. ..
T Consensus 237 Gk~VaVqG~GnVg~~aa~~L~e~G---akVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~----~~~~---~~ 306 (454)
T PTZ00079 237 GKTVVVSGSGNVAQYAVEKLLQLG---AKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKE----YAKH---SS 306 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHh----hhhc---cC
Confidence 469999999999999999999875 7999999963 255555555432211 22111 0000 00
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkk 185 (416)
| .+... +++ +|. ..+||.+=| ++..++.+.|..-++.|||-
T Consensus 307 ~--a~~~~---~~~-~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~ 348 (454)
T PTZ00079 307 T--AKYVP---GKK-PWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKL 348 (454)
T ss_pred C--cEEeC---CcC-ccc-CCccEEEeccccccCCHHHHHHHHHcCCeE
Confidence 1 01111 222 375 589998877 68888999998888889954
No 86
>PLN00016 RNA-binding protein; Provisional
Probab=93.35 E-value=0.23 Score=50.39 Aligned_cols=40 Identities=28% Similarity=0.155 Sum_probs=31.7
Q ss_pred ccccccccceeEEEE----c-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 60 YRKVAAQAKLKVAIN----G-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 60 ~~~~~~~m~ikVaIN----G-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.......|+.||.|. | +|.||+.+++.|.+++ .+|+++..
T Consensus 44 ~~~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G---~~V~~l~R 88 (378)
T PLN00016 44 AAAAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAG---HEVTLFTR 88 (378)
T ss_pred hhhhcccccceEEEEeccCCCceeEhHHHHHHHHHCC---CEEEEEec
Confidence 344455567899999 8 9999999999999875 68877764
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=93.03 E-value=0.41 Score=47.28 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=26.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEc
Confidence 4899999 8999999999999875 68888864
No 88
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=92.89 E-value=0.12 Score=52.06 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+...+ ++|.+.+.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fg---m~V~~~d~ 176 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFG---AKVVYYST 176 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcC---CEEEEECC
Confidence 568999999999999999987764 88877764
No 89
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=92.88 E-value=0.069 Score=60.59 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=80.3
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC------CCCceEEEEecCCChhHHhhhhccccccccCCCceee-ecCCeEEECC-
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK------DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP-VGTDGISVDG- 138 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~------~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~-~~~~~i~v~G- 138 (416)
++++|+|.|||.||+.+++.+.++. .-+++|++|-+... .++ |. .|--....+. ..+..-..+-
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~-----~~~--~~-~g~~~~~~~~~~~~~~~~~~~~ 535 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRK-----MLL--DE-HGIDLDNWREELAEAGEPFDLD 535 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCc-----ccc--CC-CCCCHHHHHHHHhhccCCCCHH
Confidence 6799999999999999999987542 12478888865310 111 10 0100000000 0000000000
Q ss_pred EEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCC---CCCCeE
Q 014890 139 KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYK---PDEPII 215 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~---~~~~II 215 (416)
..+.+... .....|+|||||+...........+++|. -|||+. |. |+--+--.+..+. ..++.-
T Consensus 536 ~~~~~~~~--------~~~~~~vvvd~t~~~~~~~~~~~al~~g~--~VVtaN-K~--~~a~~~~~~~el~~~a~~~~~~ 602 (819)
T PRK09436 536 RLIRLVKE--------YHLLNPVIVDCTSSQAVADQYADFLAAGF--HVVTPN-KK--ANTSSYAYYHQLREAARKSRRK 602 (819)
T ss_pred HHHHHHhh--------cCCCCCEEEECCCChHHHHHHHHHHHcCC--EEEcCC-ch--hccCCHHHHHHHHHHHHHcCCe
Confidence 00000000 01245899999997554555567888887 677765 42 1110000111111 011111
Q ss_pred ecCCcchhhhHHHHHHHHHHhhhhccccccccccceeEEE
Q 014890 216 SNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGT 255 (416)
Q Consensus 216 SnaSCTTn~Lap~lkvL~~~f~~~~~~~~~~~~~GI~~~~ 255 (416)
=--.+|.-+=.|+++.|.+.+ +..++| ..+.||-.|+
T Consensus 603 ~~yeatV~~giPii~~l~~~~--~~g~~i-~~i~GilnGT 639 (819)
T PRK09436 603 FLYETNVGAGLPVIETLQNLL--NAGDEL-LKFEGILSGS 639 (819)
T ss_pred EEEeeeeccccchHHHHHHHH--hccCcE-EEEEEEEeCh
Confidence 111455666689999997765 223443 4445666664
No 90
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.66 E-value=0.49 Score=44.67 Aligned_cols=32 Identities=19% Similarity=0.425 Sum_probs=26.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.++|+|.|||++|+.+++.|.+.. .+|+ +.|.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G---~~Vv-v~D~ 59 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEG---AKLI-VADI 59 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEE-EEcC
Confidence 358999999999999999998875 6888 4444
No 91
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.53 E-value=0.12 Score=48.48 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=55.7
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
|+|.| +|.+|+.+++.|.... ++|.++-... .+..+.-|+.. | ++ + +. ....++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~---~~V~~l~R~~-~~~~~~~l~~~---g-----~~------v------v~-~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG---FSVRALVRDP-SSDRAQQLQAL---G-----AE------V------VE-ADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---GCEEEEESSS-HHHHHHHHHHT---T-----TE------E------EE-S-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCC---CCcEEEEecc-chhhhhhhhcc---c-----ce------E------ee-cccCCH
Confidence 68999 8999999999999853 8888876532 22222222211 1 11 1 00 011233
Q ss_pred CCCCCCCccccEEEcCCCCCCCH------hhHHHHHHcCCCEEEEcCC
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDR------EGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~------~~a~~hl~aGAkkVIIsap 191 (416)
+.|.=...|+|.||-+++..... ..+....++|+|++|.|..
T Consensus 56 ~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~ 103 (233)
T PF05368_consen 56 ESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSF 103 (233)
T ss_dssp HHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEE
T ss_pred HHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEe
Confidence 33322335999999999976332 2334555789999887544
No 92
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.44 E-value=0.15 Score=51.54 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+...+ ++|++.+.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fg---m~V~~~~~ 179 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFG---MRVLIGQL 179 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECC
Confidence 468999999999999999987764 88877764
No 93
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=92.42 E-value=0.085 Score=59.87 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=29.7
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCC-------CCCceEEEEec
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRK-------DSPLEVVAIND 102 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~-------~~~~~vVaINd 102 (416)
.+.++|+|.|||.||+.+++.+.++. .-++.|++|-+
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~ 499 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVD 499 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 35799999999999999999987642 12588899865
No 94
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.35 E-value=0.89 Score=45.38 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=27.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|++||+|.|.|.||..+...|.... .+|..++.
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAG---ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcC---CcEEEEec
Confidence 5679999999999999999998764 46666653
No 95
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.13 E-value=0.4 Score=45.45 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=26.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~ 103 (416)
.+||+|.|.|++|+.+++.+......+++ +++.++.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 47999999999999999998765322344 6666653
No 96
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=92.04 E-value=0.31 Score=46.77 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=68.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+.+|.|+|.|.+||.+|.--+... .+|.++++=|. +++. -|++-+ | +.|....
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~-~~~~iv~~FDv-~~~~----------VG~~~~-------------~--v~V~~~d 136 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKK-NGMKIVAAFDV-DPDK----------VGTKIG-------------D--VPVYDLD 136 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhh-cCceEEEEecC-CHHH----------hCcccC-------------C--eeeechH
Confidence 369999999999999977555432 35999998876 3321 233222 2 3333333
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP 197 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~p 197 (416)
+.+++ -++.++|++|=|.+.....+-|..-.++|+|.++=-+|..=..|
T Consensus 137 ~le~~-v~~~dv~iaiLtVPa~~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 137 DLEKF-VKKNDVEIAILTVPAEHAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred HHHHH-HHhcCccEEEEEccHHHHHHHHHHHHHcCCceEEeccceEecCC
Confidence 33322 13458999999999998888899999999998665566532344
No 97
>PRK06932 glycerate dehydrogenase; Provisional
Probab=91.97 E-value=0.18 Score=50.91 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|||+|||.+++.+...+ ++|++.+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg---~~V~~~~ 177 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALG---MKVLYAE 177 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEEC
Confidence 469999999999999999987664 7887765
No 98
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.78 E-value=0.62 Score=44.77 Aligned_cols=31 Identities=39% Similarity=0.457 Sum_probs=28.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||||.| .|++|..++.-+..|. -||+||-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RG---HeVTAivR 32 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRG---HEVTAIVR 32 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCC---CeeEEEEe
Confidence 5999999 8999999999999996 79999964
No 99
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=91.72 E-value=0.68 Score=40.09 Aligned_cols=83 Identities=22% Similarity=0.221 Sum_probs=54.7
Q ss_pred eEEEEc----cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 70 KVAING----FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 70 kVaING----fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+|||.| -++.|+.+++.+.++. ++|..||-- ++. +.|.+ .+
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G---~~v~~Vnp~-----------~~~------------------i~G~~--~y- 46 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAG---YEVYPVNPK-----------GGE------------------ILGIK--CY- 46 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT-----------CSE------------------ETTEE---B-
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCC---CEEEEECCC-----------ceE------------------ECcEE--ee-
Confidence 689999 5999999999999854 799999842 222 23322 11
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+..++| ..+|+++-++..-...+..+.-.+.|+|.|++...
T Consensus 47 -~sl~e~p---~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 47 -PSLAEIP---EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG 88 (116)
T ss_dssp -SSGGGCS---ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT
T ss_pred -ccccCCC---CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 1122121 37899999999888888888888889999998655
No 100
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.67 E-value=0.21 Score=49.83 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|+|.|+|+||+.+++.+.... .+|...|.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R 182 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALG---ARVFVGAR 182 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998775 67777775
No 101
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.60 E-value=0.28 Score=49.10 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..||+|.|+|++|+.+++.|.... .+|.+++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r 183 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGAR 183 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEEC
Confidence 469999999999999999998764 57766764
No 102
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=91.52 E-value=0.29 Score=49.96 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..++||.|+||||+.++|.+...+ ++|..-+-.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fg---m~v~y~~~~ 178 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFG---MKVLYYDRS 178 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCC---CEEEEECCC
Confidence 468999999999999999998654 787666644
No 103
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.38 E-value=0.48 Score=38.43 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=31.5
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
||||.|+|.+|..+++.|.+.+..+-+|..+++. +++.+.++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-~~~~~~~~~ 43 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-SPEKAAELA 43 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-SHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-cHHHHHHHH
Confidence 7999999999999999998874223576656443 566666654
No 104
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.36 E-value=0.43 Score=50.51 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-+|+|.|+|.||+.+++.+.... .+|+.++
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~G---a~ViV~d 242 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLG---ARVIVTE 242 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 358999999999999999988775 5766554
No 105
>PLN02928 oxidoreductase family protein
Probab=91.19 E-value=0.25 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|||+|||.+++.+...+ ++|++.+..
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG---~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFG---VKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCC---CEEEEECCC
Confidence 468999999999999999998765 899888753
No 106
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.16 E-value=0.87 Score=48.58 Aligned_cols=103 Identities=15% Similarity=0.222 Sum_probs=62.9
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec----------CCChhHHhhhhccccc-cccCCCceeeecCCeEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND----------TGGVKQASHLLKYDST-LGIFEADVKPVGTDGIS 135 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd----------~~~~~~~a~LlkyDS~-~G~f~~~v~~~~~~~i~ 135 (416)
...||+|-|||.+|...++.|++.. -.||+|.| + +++.+.|+.+|... +|+ +....+.
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~G---AkVVaVSD~~G~iy~~~Gl-d~~~l~~~~~~k~~~~~~----v~~~~~~--- 295 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLELG---GKVVTMSDSDGYIYDPDGI-DREKLDYIMELKNLYRGR----IREYAEK--- 295 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECCCCeEECCCCC-CHHHHHHHHHHHhhcCCc----hhhhHhh---
Confidence 3469999999999999999999875 79999999 3 45555444433221 111 1100000
Q ss_pred ECCEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 136 VDGKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 136 v~G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
. | .+... +++ +|. ..+|+.+=| ++.-++.+.|++-...|++ +|+.
T Consensus 296 ~-g--a~~i~---~d~-~~~-~~cDIliPaAl~n~I~~~na~~l~a~g~~-~V~E 341 (444)
T PRK14031 296 Y-G--CKYVE---GAR-PWG-EKGDIALPSATQNELNGDDARQLVANGVI-AVSE 341 (444)
T ss_pred c-C--CEEcC---Ccc-ccc-CCCcEEeecccccccCHHHHHHHHhcCCe-EEEC
Confidence 0 1 11111 222 353 578988877 5667888888887666773 3443
No 107
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.10 E-value=0.13 Score=45.93 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=26.0
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|.|.| +|.||+.+++.|.+++ .+|+++..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R 30 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVR 30 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEec
Confidence 68999 8999999999999986 79988875
No 108
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.84 E-value=0.28 Score=49.99 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... |+|++.+-
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afg---m~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFG---MKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEECC
Confidence 468999999999999999888775 89888775
No 109
>PRK07574 formate dehydrogenase; Provisional
Probab=90.76 E-value=0.28 Score=51.19 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.++|.+.... ++|.+.+.
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG---~~V~~~dr 223 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFD---VKLHYTDR 223 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999998764 88877764
No 110
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=90.74 E-value=0.29 Score=49.71 Aligned_cols=31 Identities=26% Similarity=0.425 Sum_probs=25.4
Q ss_pred ceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaIN 101 (416)
..+|||.|||+|||.+++.+. ..+ ++|++.+
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fg---m~V~~~~ 176 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFN---MPILYNA 176 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCC---CEEEEEC
Confidence 468999999999999999886 554 7876554
No 111
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.62 E-value=0.3 Score=51.15 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+...+ ++|++.+.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~fG---m~V~~~d~ 182 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESLG---MRVYFYDI 182 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998765 89887763
No 112
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.60 E-value=0.31 Score=49.12 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+...+ ++|++.|.
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG---~~V~~~~r 153 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFG---MNIYAYTR 153 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999876654 89888875
No 113
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.59 E-value=2.2 Score=42.52 Aligned_cols=139 Identities=22% Similarity=0.185 Sum_probs=70.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC-CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~-~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|.|.|.||...+..+.... ..|+++... .+.+.+..+.+ +|- + . ++-..-.+..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G---~~vi~~~~~~~~~~~~~~~~~----~Ga---~-------~--v~~~~~~~~~-- 232 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRG---FEVYVLNRRDPPDPKADIVEE----LGA---T-------Y--VNSSKTPVAE-- 232 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCHHHHHHHHH----cCC---E-------E--ecCCccchhh--
Confidence 37999999999999988777664 577777531 12333322221 111 0 0 1100000000
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCe-EE-eecCccCCCCCCCeEecCCcchhhh
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPT-YV-VGVNADAYKPDEPIISNASCTTNCL 225 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~pt-vV-~gVN~~~y~~~~~IISnaSCTTn~L 225 (416)
.. .+ .++|+||||+|.-...+.+-..++.|.+=|++..+..+ .+. +- ..++...+.+...|+.+-.|+..-+
T Consensus 233 --~~-~~--~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~-~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~ 306 (355)
T cd08230 233 --VK-LV--GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGG-REFEVDGGELNRDLVLGNKALVGSVNANKRHF 306 (355)
T ss_pred --hh-hc--CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCC-CccccChhhhhhhHhhcCcEEEEecCCchhhH
Confidence 00 11 37899999999654445566777777644444333321 111 11 1112222323445666555655556
Q ss_pred HHHHHHHHH
Q 014890 226 APFVKVLDQ 234 (416)
Q Consensus 226 ap~lkvL~~ 234 (416)
..+++.|.+
T Consensus 307 ~~~~~~l~~ 315 (355)
T cd08230 307 EQAVEDLAQ 315 (355)
T ss_pred HHHHHHHHh
Confidence 666666643
No 114
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.39 E-value=0.33 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+...+ ++|.+.+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~ 181 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFG---MRILYYSR 181 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877764
No 115
>PLN02494 adenosylhomocysteinase
Probab=90.26 E-value=0.77 Score=49.36 Aligned_cols=32 Identities=16% Similarity=0.282 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.-+|+|.|||.||+.+++.+.... .+|++++.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~G---a~VIV~e~ 285 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAG---ARVIVTEI 285 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 358999999999999999998775 68777653
No 116
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.02 E-value=0.47 Score=42.85 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+|||+.|+|++|+.+++.|.... ++|.+.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g---~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAG---YEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTT---TEEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcC---CeEEeec
Confidence 69999999999999999998775 7887776
No 117
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.98 E-value=1.1 Score=46.48 Aligned_cols=101 Identities=27% Similarity=0.326 Sum_probs=66.4
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
.+.+|+||.|.|+|+|-+++++..-++++.+||||-+. +.+...-. ...|+-- +.++ +++
T Consensus 4 s~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~f---Aq~~~~~--~~k~-------y~s------- 63 (351)
T KOG2741|consen 4 SATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADP-SLERAKEF---AQRHNIP--NPKA-------YGS------- 63 (351)
T ss_pred CceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHH---HHhcCCC--CCcc-------ccC-------
Confidence 35699999999999999999998776567999999986 44333222 2222210 1110 111
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
-++| -++..||+|.-++..-...|++-..++.|- .|++--|
T Consensus 64 ---yEeL-akd~~vDvVyi~~~~~qH~evv~l~l~~~K-~VL~EKP 104 (351)
T KOG2741|consen 64 ---YEEL-AKDPEVDVVYISTPNPQHYEVVMLALNKGK-HVLCEKP 104 (351)
T ss_pred ---HHHH-hcCCCcCEEEeCCCCccHHHHHHHHHHcCC-cEEeccc
Confidence 0111 023378999999998888888888887763 4777555
No 118
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.97 E-value=1.6 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||+|.|.|.||..++..+...+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~ 28 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKN 28 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC
Confidence 469999999999999988777654
No 119
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=89.87 E-value=0.27 Score=43.74 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||+|.|.||+|+.+.++|.+.. .+|++|-.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag---~~v~~v~s 41 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAG---HEVVGVYS 41 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTT---SEEEEESS
T ss_pred ccEEEEECCCHHHHHHHHHHHHCC---CeEEEEEe
Confidence 579999999999999999998765 78888854
No 120
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.84 E-value=0.63 Score=49.12 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=24.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
.-+|+|.|+|.||+.+++.+.... .+|+++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~G---a~ViV~ 231 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQG---ARVIVT 231 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEE
Confidence 358999999999999999888765 566554
No 121
>PRK14030 glutamate dehydrogenase; Provisional
Probab=89.79 E-value=1.5 Score=46.82 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=65.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhccccccccCCCceeeecCCeEEEC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVD 137 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~ 137 (416)
...||+|-|||.+|...++.|.+.. ..||+|.|. .+++.+.+|++|-..+|..-.. ... .+.
T Consensus 227 ~g~~vaIQGfGnVG~~aA~~L~e~G---akvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~---~~~---~~~ 297 (445)
T PRK14030 227 KGKTVAISGFGNVAWGAATKATELG---AKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAP---YAE---KFP 297 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHH---HHh---cCC
Confidence 3579999999999999999998875 799997662 1345566677654433321000 000 111
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcC-CCCCCCHhhHHHHHHcCCCE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEG-TGVFVDREGAGKHIQAGAKK 185 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~-TG~f~s~~~a~~hl~aGAkk 185 (416)
|- +.. ++++ .|. ..+||.+=| ++.-++.+.|++-.+.+||-
T Consensus 298 ga--~~i---~~~~-~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~ 339 (445)
T PRK14030 298 GS--TFF---AGKK-PWE-QKVDIALPCATQNELNGEDADKLIKNGVLC 339 (445)
T ss_pred CC--EEc---CCcc-cee-ccccEEeeccccccCCHHHHHHHHHcCCeE
Confidence 21 111 1222 253 588988876 68889999999888888853
No 122
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.61 E-value=0.44 Score=48.15 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=27.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||.||+.+++.+...+ ++|.+.+.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG---~~V~~~~~ 167 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWG---FPLRCWSR 167 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 358999999999999999998764 88877764
No 123
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.55 E-value=1.2 Score=46.64 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd 102 (416)
.+|+|.|.|.||+.+++.|...+ . +|+.+|.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G---~~~V~v~~r 214 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKG---VRKITVANR 214 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCC---CCeEEEEeC
Confidence 58999999999999999998764 4 5666665
No 124
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=89.41 E-value=1.2 Score=46.12 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=25.9
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
...||+|.| +|.+|+.+.++|...+ .+|.+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d 129 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILE 129 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeC
Confidence 447999999 9999999999998764 5665554
No 125
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.29 E-value=3.4 Score=40.66 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=64.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|+|.|.||...+..+.... ..+|.+-|. ..+.+....++ + .++- .+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G---~~~v~~~~~-~~~rl~~a~~~----~--------------~i~~--------~~ 195 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAG---GSPPAVWET-NPRRRDGATGY----E--------------VLDP--------EK 195 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcC---CceEEEeCC-CHHHHHhhhhc----c--------------ccCh--------hh
Confidence 37999999999999988776654 443333233 22222111110 0 0110 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCcc-CCCCCCCeEecCCcchhhhHH
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~-~y~~~~~IISnaSCTTn~Lap 227 (416)
. ...++|+||||+|.-...+.+-..++.|.+=|++..+. + ++ .+|.. .+.+...++....++..-+..
T Consensus 196 ~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~--~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~ 264 (308)
T TIGR01202 196 D-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYT-E--PV---NFDFVPAFMKEARLRIAAEWQPGDLHA 264 (308)
T ss_pred c-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecC-C--Cc---ccccchhhhcceEEEEecccchhHHHH
Confidence 0 12378999999998655566667777776444443332 1 10 12222 222233556554444444555
Q ss_pred HHHHHHH
Q 014890 228 FVKVLDQ 234 (416)
Q Consensus 228 ~lkvL~~ 234 (416)
+++.+.+
T Consensus 265 ~~~l~~~ 271 (308)
T TIGR01202 265 VRELIES 271 (308)
T ss_pred HHHHHHc
Confidence 6666643
No 126
>PLN02306 hydroxypyruvate reductase
Probab=89.07 E-value=0.47 Score=49.54 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=26.0
Q ss_pred ceeEEEEccChhHHHHHHHHH-hCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~-~~~~~~~~vVaINd 102 (416)
..+|||.|||+|||.+++.+. ..+ ++|.+.+-
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~fG---m~V~~~d~ 197 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDL 197 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC---CEEEEECC
Confidence 468999999999999999874 543 78877764
No 127
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.07 E-value=0.54 Score=45.36 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=25.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|++||+|.|+|.||..+++.|........+|..++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 56799999999999999999886531113444444
No 128
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.05 E-value=0.57 Score=41.09 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=52.2
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhcc-ccccccCCCceeeecCCeEEEC-CEEEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVVSN 146 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Llky-DS~~G~f~~~v~~~~~~~i~v~-G~~I~v~~~ 146 (416)
||.|.|.|.+|..+++.|....-+ ++..+.+ ..+++.+..-+-| .+.-|+.+.+.- .+.--.++ +-++.....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~--~~~l~~~~p~v~i~~~~~ 76 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVA--ARRLNELNPGVNVTAVPE 76 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHH--HHHHHHHCCCcEEEEEee
Confidence 689999999999999999876422 3434533 4455555544434 233454332210 11100111 112222221
Q ss_pred c-CCCCCCCCCccccEEEcCCCCCCCHhhH
Q 014890 147 R-NPVNLPWGDLGIDLVIEGTGVFVDREGA 175 (416)
Q Consensus 147 ~-~p~~i~W~~~gvDiVie~TG~f~s~~~a 175 (416)
. ++.+......+.|+||+|+..+..+...
T Consensus 77 ~~~~~~~~~~~~~~diVi~~~d~~~~~~~l 106 (143)
T cd01483 77 GISEDNLDDFLDGVDLVIDAIDNIAVRRAL 106 (143)
T ss_pred ecChhhHHHHhcCCCEEEECCCCHHHHHHH
Confidence 1 1111111124789999999986655433
No 129
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.95 E-value=0.53 Score=47.95 Aligned_cols=32 Identities=31% Similarity=0.473 Sum_probs=27.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++|||.|+|+||+.+++.+.... ++|++.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G---~~V~~~d~ 177 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFG---ATITAYDA 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 458999999999999999998764 78877764
No 130
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.83 E-value=0.5 Score=49.27 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=26.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||+|+|.||+.+++.+...+ ++|.+.+
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G---~~V~~~d 146 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALG---IKTLLCD 146 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999998765 8887665
No 131
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=88.76 E-value=1.6 Score=44.89 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=57.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
++||||.|. ++|+..++++.+.+ +++++|||-|. +.+....+-+ .||. ..+ .
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~-~~~eLvaV~d~-~~erA~~~A~---~~gi--------------------~~y--~ 54 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAP-ERFELAGILAQ-GSERSRALAH---RLGV--------------------PLY--C 54 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCC-CCcEEEEEEcC-CHHHHHHHHH---HhCC--------------------Ccc--C
Confidence 579999999 68999999887753 14999999986 4443332221 1221 000 1
Q ss_pred CCCCCCCCCccccEEEc--CCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 148 NPVNLPWGDLGIDLVIE--GTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie--~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+.+++. .+-++|+|.= ++......+.+...+++| |.|++--|
T Consensus 55 ~~eell-~d~Di~~V~ipt~~P~~~H~e~a~~aL~aG-kHVL~EKP 98 (343)
T TIGR01761 55 EVEELP-DDIDIACVVVRSAIVGGQGSALARALLARG-IHVLQEHP 98 (343)
T ss_pred CHHHHh-cCCCEEEEEeCCCCCCccHHHHHHHHHhCC-CeEEEcCC
Confidence 222222 2224555554 334567789999999999 47877444
No 132
>PLN03139 formate dehydrogenase; Provisional
Probab=88.65 E-value=0.49 Score=49.44 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|+|+||+.+++.+...+ ++|.+.+.
T Consensus 199 gktVGIVG~G~IG~~vA~~L~afG---~~V~~~d~ 230 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPFN---CNLLYHDR 230 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHCC---CEEEEECC
Confidence 468999999999999999998764 78877653
No 133
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.56 E-value=0.99 Score=44.82 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=78.9
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhcc-----c--cccccCCCceeeecCCeEEECCEEEE
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKY-----D--STLGIFEADVKPVGTDGISVDGKVIQ 142 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llky-----D--S~~G~f~~~v~~~~~~~i~v~G~~I~ 142 (416)
||||.|.|.+|+.++..+.... ++|+..+- +++.+....++ | -..|.....- .+..+ ..|+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~--~~~~~~~~~~~i~~~~~~~~~~g~~~~~~---~~~~~----~~l~ 74 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAG---VDVLVFET--TEELATAGRNRIEKSLERAVSRGKLTERE---RDAAL----ARLR 74 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCC---CEEEEEEC--CHHHHHHHHHHHHHHHHHHHhcccCChhh---HHHHH----hCeE
Confidence 8999999999999998877654 78766653 23333221100 0 0112221100 00000 1233
Q ss_pred EEeccCCCCCCCCCccccEEEcCCCCCCCHhhH-----HHHH-HcCCCEEEEcCCCC-C--------CCCeEEee---cC
Q 014890 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGA-----GKHI-QAGAKKVLITAPGK-G--------DIPTYVVG---VN 204 (416)
Q Consensus 143 v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a-----~~hl-~aGAkkVIIsapsk-d--------~~ptvV~g---VN 204 (416)
+. .+.+.+ .++|+||||...-...+.. +++. ..|+ +|.|+.+. + ..|--+.| .|
T Consensus 75 ~~--~~~~~~----~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la~~~~~~~r~~g~hf~~ 146 (286)
T PRK07819 75 FT--TDLGDF----ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLAAATKRPGRVLGLHFFN 146 (286)
T ss_pred ee--CCHHHh----CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCCccEEEEecCC
Confidence 32 333333 4899999998766554322 3444 4455 88877662 0 12322333 33
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
+-.+.+.-.||..+.+....+.-+...+.+..
T Consensus 147 P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~l 178 (286)
T PRK07819 147 PVPVLPLVELVPTLVTSEATVARAEEFASDVL 178 (286)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 32222334577777777777777777766655
No 134
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.50 E-value=0.55 Score=47.93 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=53.8
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
|.|.|.|.+|+.+++.|.++.. + +|+... - +.+.+..+.+ ... ...++ .......|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~--~~~v~va~-r-~~~~~~~~~~--~~~---~~~~~-------------~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGP--FEEVTVAD-R-NPEKAERLAE--KLL---GDRVE-------------AVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTC--E-EEEEEE-S-SHHHHHHHHT----T---TTTEE-------------EEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCC--CCcEEEEE-C-CHHHHHHHHh--hcc---cccee-------------EEEEecCCH
Confidence 6899999999999999988753 4 544443 2 4444444442 100 00111 111112233
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
+.+.=--.+.|+||.|.|.|....-++..+++|+ -.|+.
T Consensus 59 ~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 59 ESLAELLRGCDVVINCAGPFFGEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp HHHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHHhcCCEEEECCccchhHHHHHHHHHhCC--Ceecc
Confidence 2221112367999999999988888889999999 46663
No 135
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=88.40 E-value=1.4 Score=51.67 Aligned_cols=99 Identities=21% Similarity=0.152 Sum_probs=62.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCce------------EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLE------------VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGIS 135 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~------------vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~ 135 (416)
+.||+|.|.|+||+..++.|.+.++ .+ +|+|-|. +++.+..+.+- + ++ +
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~--~~~~~~~~~~~~~~lV~VaD~-~~~~a~~la~~---~---~~-~--------- 629 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKT--ISYYGDDSEEPTDVHVIVASL-YLKDAKETVEG---I---EN-A--------- 629 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcC--ccccccccccccccEEEEECC-CHHHHHHHHHh---c---CC-C---------
Confidence 3599999999999999999976532 44 7888886 44444333320 0 00 0
Q ss_pred ECCEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 136 VDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 136 v~G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
+.+.+- -.|++++.=.-.++|+||-|++.+...+-+...+++|. . +++..
T Consensus 630 ---~~v~lD-v~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGk-H-vv~ek 679 (1042)
T PLN02819 630 ---EAVQLD-VSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKK-H-LVTAS 679 (1042)
T ss_pred ---ceEEee-cCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCC-C-EEECc
Confidence 112220 12333321000268999999999999999999999997 3 44443
No 136
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.31 E-value=0.94 Score=47.76 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=25.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-+|+|.|+|.||+.+++.+.... .+|+++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~G---a~ViV~d 225 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMG---ARVIVTE 225 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCc---CEEEEEe
Confidence 458999999999999999888764 6776664
No 137
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.27 E-value=0.61 Score=45.75 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|++||||.|+|.+|+.+++.+.... ++|.+.|
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g---~~v~~~d 32 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAG---YSLVVYD 32 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCC---CeEEEEc
Confidence 5579999999999999999998754 6777665
No 138
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.12 E-value=1.3 Score=42.62 Aligned_cols=30 Identities=10% Similarity=0.286 Sum_probs=24.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.| +|.||+.+++.|.++. .+|.++..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g---~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS---VPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC---CcEEEEeC
Confidence 578999 8999999999998874 67777754
No 139
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.83 E-value=2.6 Score=41.80 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||+|.|.|.+|..++..+...+- . +|+.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-~-ev~L~D 33 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-G-DVVLFD 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-e-EEEEEE
Confidence 699999999999999988876531 1 665553
No 140
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.74 E-value=0.89 Score=45.49 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.4
Q ss_pred cceeEEEEccChhHHHHHHHHHhCC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
+.++|+|.|+|.||+.+.|.+.++.
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g 26 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAG 26 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcC
Confidence 4579999999999999999998875
No 141
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=86.15 E-value=0.86 Score=49.25 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.5
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+.... ++|++.+.
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 169 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFG---MKVLAYDP 169 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 358999999999999999988764 88888875
No 142
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=86.05 E-value=2.1 Score=38.21 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=45.3
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
+||+|.|. |.||..++-.+..+.-. =||+-+....+ ..-+.. .|-.|..+.. +..+.+.. .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~-~ei~L~D~~~~-~~~g~a--~Dl~~~~~~~-------------~~~~~i~~-~ 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA-DEIVLIDINED-KAEGEA--LDLSHASAPL-------------PSPVRITS-G 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS-SEEEEEESSHH-HHHHHH--HHHHHHHHGS-------------TEEEEEEE-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC-CceEEeccCcc-cceeee--hhhhhhhhhc-------------cccccccc-c
Confidence 59999998 99999999988876421 14544443201 111111 1332322111 12234443 4
Q ss_pred CCCCCCCCCccccEEEcCCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFV 170 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~ 170 (416)
+.+++ .+.|+||-+.|.-.
T Consensus 63 ~~~~~----~~aDivvitag~~~ 81 (141)
T PF00056_consen 63 DYEAL----KDADIVVITAGVPR 81 (141)
T ss_dssp SGGGG----TTESEEEETTSTSS
T ss_pred ccccc----ccccEEEEeccccc
Confidence 45555 38999999999854
No 143
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=85.99 E-value=1.5 Score=45.95 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|+|.|+|.||+.+++.|...+- -+|+.+|.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~--~~V~v~~r 212 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGV--GKILIANR 212 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCC--CEEEEEeC
Confidence 589999999999999999987541 36666775
No 144
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.90 E-value=2.1 Score=45.07 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=60.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||-|.|.|.||+.+++-|.++.+ .+|. |-|- +++..+... ++..++ ++ .+.+|- .+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d--~~V~-iAdR-s~~~~~~i~--~~~~~~----v~-----~~~vD~--------~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD--GEVT-IADR-SKEKCARIA--ELIGGK----VE-----ALQVDA--------AD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC--ceEE-EEeC-CHHHHHHHH--hhcccc----ce-----eEEecc--------cC
Confidence 689999999999999999888764 4543 3443 344444443 222221 11 222221 11
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
.+.+.=--.+.|+||.|.+.|.+..-.+..+++|+. .++..
T Consensus 59 ~~al~~li~~~d~VIn~~p~~~~~~i~ka~i~~gv~--yvDts 99 (389)
T COG1748 59 VDALVALIKDFDLVINAAPPFVDLTILKACIKTGVD--YVDTS 99 (389)
T ss_pred hHHHHHHHhcCCEEEEeCCchhhHHHHHHHHHhCCC--EEEcc
Confidence 111000012449999999999999988899999994 44444
No 145
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=85.82 E-value=0.96 Score=47.23 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|||.|+|.||+.+.+.+...+ ++|++.+
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~G---~~V~~~D 146 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGLG---WKVLVCD 146 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHCC---CEEEEEC
Confidence 468999999999999999998765 8887664
No 146
>PLN02712 arogenate dehydrogenase
Probab=85.75 E-value=1.1 Score=50.00 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=29.3
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+++||||.|+|+||+.+++.|...+ .+|++++..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G---~~V~~~dr~ 401 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQG---HTVLAYSRS 401 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCc---CEEEEEECC
Confidence 34689999999999999999998754 688888764
No 147
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=85.69 E-value=0.6 Score=38.82 Aligned_cols=92 Identities=26% Similarity=0.322 Sum_probs=57.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE-ec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV-SN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~-~~ 146 (416)
+.||+|.|.|+.|+.++...+... .+.++++=|. ++ ++. + -.++| ++|+ +.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~--g~~i~~~~dv-~~-------------~~~--------G--~~i~g--ipV~~~~ 54 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMR--GFGIVAVFDV-DP-------------EKI--------G--KEIGG--IPVYGSM 54 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHH--CECEEEEEEE-CT-------------TTT--------T--SEETT--EEEESSH
T ss_pred CCeEEEECCCCcHHHHHHhHHHHc--CCCCEEEEEc-CC-------------Ccc--------C--cEECC--EEeeccH
Confidence 368999999999999885555432 2777777653 11 111 1 11344 4454 22
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 191 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsap 191 (416)
++..+. .++|+.+=|.+.....+.+...+++|.|.++.-+|
T Consensus 55 ~~l~~~----~~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nft~ 95 (96)
T PF02629_consen 55 DELEEF----IEIDIAIITVPAEAAQEVADELVEAGIKGIVNFTP 95 (96)
T ss_dssp HHHHHH----CTTSEEEEES-HHHHHHHHHHHHHTT-SEEEEESS
T ss_pred HHhhhh----hCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 222111 13899999998888888888999999999876554
No 148
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.68 E-value=1.5 Score=44.53 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=19.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
.||+|.|.|.+|..++..+..++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~g 29 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKN 29 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC
Confidence 58999999999999988777654
No 149
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=85.58 E-value=3.5 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..||+|.|.|.||+.+++.+..... -+|..+|-
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~--~~V~v~~r 210 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGV--AEITIANR 210 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 4689999999999999999887431 34555653
No 150
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.28 E-value=1.9 Score=43.95 Aligned_cols=101 Identities=19% Similarity=0.163 Sum_probs=51.1
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECC-EEEEEEeccC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G-~~I~v~~~~~ 148 (416)
+|+|.|.|.||-+.+.++.... --+|+++ |. +.+-+++.-++. +....++. +.... ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G--a~~Viv~-d~-~~~Rl~~A~~~~--------------g~~~~~~~~~~~~~---~~ 229 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG--ASVVIVV-DR-SPERLELAKEAG--------------GADVVVNPSEDDAG---AE 229 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC--CceEEEe-CC-CHHHHHHHHHhC--------------CCeEeecCccccHH---HH
Confidence 8999999999988755554443 2466666 43 333333322211 11111111 11000 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
...+.. ..|+|+||||+|.....+.+-..++.|-+=+++.-+.
T Consensus 230 ~~~~t~-g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 230 ILELTG-GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHHHhC-CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccC
Confidence 001111 1489999999995554556666666555334443343
No 151
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.28 E-value=0.99 Score=48.78 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|||.|||+||+.+++.+...+ ++|++.+.
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG---~~V~~~d~ 171 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFG---MKVIAYDP 171 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CEEEEECC
Confidence 468999999999999999988764 89888875
No 152
>PRK08818 prephenate dehydrogenase; Provisional
Probab=85.26 E-value=1.5 Score=45.58 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=24.9
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
+.||+|.|+ |.||+.+.+++.++. ..+|.++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~--~~~V~g~ 35 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM--QLEVIGH 35 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC--CCEEEEE
Confidence 469999999 999999999998652 3676555
No 153
>PRK08605 D-lactate dehydrogenase; Validated
Probab=85.16 E-value=1.1 Score=45.63 Aligned_cols=33 Identities=36% Similarity=0.463 Sum_probs=25.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++|||.|+|+||+.+++.+...- .++|.+.+.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~--g~~V~~~d~ 178 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGY--GSDVVAYDP 178 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC--CCEEEEECC
Confidence 468999999999999999884221 278776653
No 154
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=84.90 E-value=2.2 Score=38.32 Aligned_cols=110 Identities=22% Similarity=0.344 Sum_probs=59.7
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCC-------eEEECCEEE
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTD-------GISVDGKVI 141 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~-------~i~v~G~~I 141 (416)
|+|.| +|-||++.|+.+.+.+ ++|+|+++---.+.+.+..+.+ |...| +-+.++. .+.-.+..+
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~~~L~~q~~~f~p~~------v~i~~~~~~~~l~~~~~~~~~~~ 73 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNIEKLAEQAREFKPKY------VVIADEEAYEELKKALPSKGPGI 73 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTHHHHHHHHHHHT-SE------EEESSHHHHHHHHHHHHHTTSSS
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCHHHHHHHHHHhCCCE------EEEcCHHHHHHHHHHhhhcCCCC
Confidence 68999 9999999999998875 3699999976556666655443 22111 1100000 000011122
Q ss_pred EEEeccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 142 QVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 142 ~v~~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+++...+ ..++- ...++|+|+-+.-.|...+-.-..+++| |++.+.
T Consensus 74 ~v~~G~~~l~~~~-~~~~~D~vv~Ai~G~aGL~pt~~Ai~~g-k~iaLA 120 (129)
T PF02670_consen 74 EVLSGPEGLEELA-EEPEVDIVVNAIVGFAGLKPTLAAIKAG-KDIALA 120 (129)
T ss_dssp EEEESHHHHHHHH-THTT-SEEEE--SSGGGHHHHHHHHHTT-SEEEE-
T ss_pred EEEeChHHHHHHh-cCCCCCEEEEeCcccchHHHHHHHHHCC-CeEEEe
Confidence 3322111 01110 1136788888888887777777778888 455553
No 155
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.75 E-value=4.9 Score=38.87 Aligned_cols=137 Identities=19% Similarity=0.221 Sum_probs=71.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|.|.|.||...++.+.... .. |+++ +. +.+.+..+.+ +|- + ..++.+.. . .
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G---~~~Vi~~-~~-~~~r~~~a~~----~Ga---~--------~~i~~~~~---~-~ 177 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAG---AARVVAA-DP-SPDRRELALS----FGA---T--------ALAEPEVL---A-E 177 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEE-CC-CHHHHHHHHH----cCC---c--------EecCchhh---H-H
Confidence 37999999999999888776654 44 6666 32 2333322221 221 0 01111000 0 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccC-CCCCCCeEecCCcchhhhH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADA-YKPDEPIISNASCTTNCLA 226 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~-y~~~~~IISnaSCTTn~La 226 (416)
...++. ...++|+||||+|.-...+.+-..++.|.+-|++...... .+ ..+|... +.+...|+..-..+...+.
T Consensus 178 ~~~~~~-~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~---~~i~~~~~~~~~~~i~g~~~~~~~~~~ 252 (280)
T TIGR03366 178 RQGGLQ-NGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPG-GP---VALDPEQVVRRWLTIRGVHNYEPRHLD 252 (280)
T ss_pred HHHHHh-CCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCC-Cc---eeeCHHHHHhCCcEEEecCCCCHHHHH
Confidence 000011 1237999999999766566677778777754444433211 11 1233332 2233456655444445566
Q ss_pred HHHHHHHH
Q 014890 227 PFVKVLDQ 234 (416)
Q Consensus 227 p~lkvL~~ 234 (416)
.+++.|.+
T Consensus 253 ~~~~~l~~ 260 (280)
T TIGR03366 253 QAVRFLAA 260 (280)
T ss_pred HHHHHHHh
Confidence 67777665
No 156
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.72 E-value=1.2 Score=43.70 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=26.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|.|.||..+.+.|.+.+ .+|.+++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLG---HTVYGVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCC---CEEEEEEC
Confidence 48999999999999999998764 68777763
No 157
>PLN02256 arogenate dehydrogenase
Probab=84.70 E-value=1.4 Score=44.42 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=28.1
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.++||+|.|+|.||+.+++.|.+.+ .+|++++..
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRS 68 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECc
Confidence 3579999999999999999987653 688888754
No 158
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=84.55 E-value=1.2 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=27.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+|||+|+|+||+.+++.|.... ++|++.|+.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G---~~ViV~~r~ 48 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSG---VEVVVGVRP 48 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCc---CEEEEEECc
Confidence 47999999999999999998764 898887754
No 159
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.29 E-value=5 Score=39.95 Aligned_cols=90 Identities=17% Similarity=0.077 Sum_probs=49.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.||...+..+.... . .|+++.. +.+.+..+.+ +|. + ..++-+.-.+..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G---~~~Vi~~~~--~~~~~~~a~~----lGa---~--------~vi~~~~~~~~~-- 228 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLG---AAEIVCADV--SPRSLSLARE----MGA---D--------KLVNPQNDDLDH-- 228 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEeC--CHHHHHHHHH----cCC---c--------EEecCCcccHHH--
Confidence 37999999999999988877664 4 4555432 2333333332 221 0 011110000000
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
..+ .. .++|+||||+|.-.+.+.+-..++.|.+
T Consensus 229 -~~~-~~--g~~D~vid~~G~~~~~~~~~~~l~~~G~ 261 (343)
T PRK09880 229 -YKA-EK--GYFDVSFEVSGHPSSINTCLEVTRAKGV 261 (343)
T ss_pred -Hhc-cC--CCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000 01 2589999999975445566677777763
No 160
>PLN00106 malate dehydrogenase
Probab=84.18 E-value=5.1 Score=40.97 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=69.6
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE-EEe
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ-VVS 145 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~-v~~ 145 (416)
.||+|.|. |+||..++..+..++. ..+-++-||.. .. ..+ |-.|..+.. .+. +..
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~-~g----~a~--Dl~~~~~~~---------------~i~~~~~ 76 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT-PG----VAA--DVSHINTPA---------------QVRGFLG 76 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC-Ce----eEc--hhhhCCcCc---------------eEEEEeC
Confidence 49999997 9999999998876542 12333333331 11 111 222211110 111 111
Q ss_pred ccCC-CCCCCCCccccEEEcCCCCCCC----Hh------------hHHHHHHcCCCEEEE--cCCCCCCCCeEEeec-Cc
Q 014890 146 NRNP-VNLPWGDLGIDLVIEGTGVFVD----RE------------GAGKHIQAGAKKVLI--TAPGKGDIPTYVVGV-NA 205 (416)
Q Consensus 146 ~~~p-~~i~W~~~gvDiVie~TG~f~s----~~------------~a~~hl~aGAkkVII--sapskd~~ptvV~gV-N~ 205 (416)
..++ +.+ .|+|+||-+.|.-.. +. .++.-.+.|.+.+|| |+|.....|.+.+-+ +.
T Consensus 77 ~~d~~~~l----~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~ 152 (323)
T PLN00106 77 DDQLGDAL----KGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKA 152 (323)
T ss_pred CCCHHHHc----CCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHc
Confidence 1111 123 489999999997443 22 222333456555554 666532223222212 11
Q ss_pred cCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 206 DAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 206 ~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
..+ +.+++|.- | +-=.+.+-..|.+++
T Consensus 153 s~~-p~~~viG~--~-~LDs~Rl~~~lA~~l 179 (323)
T PLN00106 153 GVY-DPKKLFGV--T-TLDVVRANTFVAEKK 179 (323)
T ss_pred CCC-CcceEEEE--e-cchHHHHHHHHHHHh
Confidence 122 23678876 3 344557778888888
No 161
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.88 E-value=1.7 Score=38.28 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=53.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-||.|.|.|-+||.++..|...+- =+|..+|.. .+.+..|.+ . + .+..+.+....+
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~--~~i~i~nRt--~~ra~~l~~--~-~-----------------~~~~~~~~~~~~ 68 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGA--KEITIVNRT--PERAEALAE--E-F-----------------GGVNIEAIPLED 68 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTS--SEEEEEESS--HHHHHHHHH--H-H-----------------TGCSEEEEEGGG
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC--CEEEEEECC--HHHHHHHHH--H-c-----------------CccccceeeHHH
Confidence 589999999999999999998752 136668863 333333331 0 0 111122322222
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC--EEEEcC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK--KVLITA 190 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk--kVIIsa 190 (416)
.. -.....|+||.||+..... --+.+++.+-+ +++++-
T Consensus 69 ~~---~~~~~~DivI~aT~~~~~~-i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 69 LE---EALQEADIVINATPSGMPI-ITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp HC---HHHHTESEEEE-SSTTSTS-STHHHHTTTCHHCSEEEES
T ss_pred HH---HHHhhCCeEEEecCCCCcc-cCHHHHHHHHhhhhceecc
Confidence 21 1123689999999986542 22344554433 488876
No 162
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.59 E-value=1.6 Score=45.04 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+.||.|.|+|++|+.+++.+.... .+|++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~ 198 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDI 198 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEEC
Confidence 357999999999999999998765 57777763
No 163
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=83.00 E-value=2.5 Score=42.78 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||+|.|.|.||..++-.+..++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~ 29 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQG 29 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC
Confidence 359999999999999999887764
No 164
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.98 E-value=7.1 Score=40.43 Aligned_cols=94 Identities=22% Similarity=0.260 Sum_probs=59.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|+|.|+|-.|-..++.+.... .+|+|+.-..+-...|.-| +....++.+ +
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~g---a~Via~~~~~~K~e~a~~l-----------------GAd~~i~~~--------~ 219 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMG---AEVIAITRSEEKLELAKKL-----------------GADHVINSS--------D 219 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEeCChHHHHHHHHh-----------------CCcEEEEcC--------C
Confidence 58999999999988888777654 7998887543322222211 111112221 1
Q ss_pred CCCCC-CCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLP-WGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~-W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++.++ ..+ -+|++|++.| ..+-+.+-+.++.|-+=|++-.|.
T Consensus 220 ~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 220 SDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred chhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCC
Confidence 21111 111 1899999999 888888888898887667776663
No 165
>PLN02712 arogenate dehydrogenase
Probab=82.73 E-value=1.6 Score=48.81 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.7
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
++||||+|+|+||+.+++.+...+ ++|++++..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 469999999999999999998764 688887653
No 166
>PF12338 RbcS: Ribulose-1,5-bisphosphate carboxylase small subunit; InterPro: IPR024680 This domain is found in the N-terminal region of the small subunit of ribulose-1,5-bisphosphate in plants. It contains a conserved APF sequence motif. There are also two completely conserved residues (L and P) that may be functionally important.
Probab=82.02 E-value=0.75 Score=34.25 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=18.4
Q ss_pred CcccccccccccCCCCCcCCCC
Q 014890 18 KGFSEFSGLRNSASLPFGRKSS 39 (416)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (416)
.-.+-|+|||+.+.+|..|+..
T Consensus 22 ~mVAPFtGLKS~a~fPvtrK~~ 43 (45)
T PF12338_consen 22 SMVAPFTGLKSTAAFPVTRKSN 43 (45)
T ss_pred ceeeccccccccccCccccccC
Confidence 4678999999999999877754
No 167
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.74 E-value=1.5 Score=44.91 Aligned_cols=127 Identities=15% Similarity=0.049 Sum_probs=61.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEec-CCChhHHhhhhccccc---cccCCCc-----eeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND-TGGVKQASHLLKYDST---LGIFEAD-----VKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd-~~~~~~~a~LlkyDS~---~G~f~~~-----v~~~~~~~i~v~ 137 (416)
..||.|.|.|.+|..+++.|.... + .+..|.+ ..+...+..-+-|+.. .|+.+.. ++ .-+..+.+
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aG---vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~-~inp~v~i- 98 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAG---IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLR-KINSEVEI- 98 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC---CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHH-HHCCCcEE-
Confidence 458999999999999999988764 3 3333432 2233333322222211 1221110 00 00122222
Q ss_pred CEEEEEEec-cCCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCCEEEEcCCC-CCCCCeEEeec
Q 014890 138 GKVIQVVSN-RNPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPG-KGDIPTYVVGV 203 (416)
Q Consensus 138 G~~I~v~~~-~~p~~i~W~~~gvDiVie~TG~f~s~~~a~-~hl~aGAkkVIIsaps-kd~~ptvV~gV 203 (416)
..... -+++++.--..+.|+||+||..|.++.... ...+.|.+.|....-+ .+-.+++.+|-
T Consensus 99 ----~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~ 163 (338)
T PRK12475 99 ----VPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGK 163 (338)
T ss_pred ----EEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCC
Confidence 22111 112222212347899999999988775443 3335677654332222 12234555553
No 168
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=81.52 E-value=6.2 Score=38.35 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=25.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+|.|-| .|-||+.+++.|.+++ .+|+++.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g---~~V~~~~ 35 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRG---YTVKATV 35 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCC---CEEEEEE
Confidence 3799999 8999999999999875 5776654
No 169
>PLN02688 pyrroline-5-carboxylate reductase
Probab=81.47 E-value=3 Score=40.19 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=26.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~ 103 (416)
|||+|.|+|.+|..+++.|.+... +..+|++.++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC
Confidence 589999999999999999987641 12377777443
No 170
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.46 E-value=8.9 Score=40.32 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=51.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
.||.|.|.|.+|..+++.|.++. .+|+.+... +.+....+.++ .+.. | |.+.....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G---~~V~~~d~~-~~~~~~~~~~~-------------l~~~-----g--v~~~~~~~ 72 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG---ARVTVVDDG-DDERHRALAAI-------------LEAL-----G--ATVRLGPG 72 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCC-chhhhHHHHHH-------------HHHc-----C--CEEEECCC
Confidence 48999999999999999998775 676666432 22111111110 0000 1 11111111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
+. + ..+.|+||.++|.--+.+......+.|. -|++
T Consensus 73 ~~-~---~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi--~v~~ 107 (480)
T PRK01438 73 PT-L---PEDTDLVVTSPGWRPDAPLLAAAADAGI--PVWG 107 (480)
T ss_pred cc-c---cCCCCEEEECCCcCCCCHHHHHHHHCCC--eecc
Confidence 11 1 1367999999998766666555566676 4454
No 171
>PRK06545 prephenate dehydrogenase; Validated
Probab=81.03 E-value=4.9 Score=41.12 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
||+|.|+|.||..+++.|.... .++.+...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G-~~v~i~~~~ 32 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAG-PDVFIIGYD 32 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 7999999999999999998764 234544443
No 172
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.80 E-value=2.9 Score=40.72 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhh-ccccccccCCCceeeecCCeEEECC-EEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLL-KYDSTLGIFEADVKPVGTDGISVDG-KVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Ll-kyDS~~G~f~~~v~~~~~~~i~v~G-~~I~v~ 144 (416)
..||.|.|.|-+|-.++..|....-+ +++-|.+ ..++..+..-+ ...+..|+.+.++- .+.-..+|. -.|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg--~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~--~~~l~~inP~~~V~~~ 86 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVG--KLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVM--AERIRDINPECEVDAV 86 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEECchhhcchhCcChhhCCCcHHHHH--HHHHHHHCCCcEEEEe
Confidence 46899999999999999999765422 3333432 23444443322 22355666543220 111111221 112221
Q ss_pred ecc-CCCCC-CCCCccccEEEcCCCCCCCHhhHHHHH-HcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcc
Q 014890 145 SNR-NPVNL-PWGDLGIDLVIEGTGVFVDREGAGKHI-QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCT 221 (416)
Q Consensus 145 ~~~-~p~~i-~W~~~gvDiVie~TG~f~s~~~a~~hl-~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCT 221 (416)
... +++++ .+-..+.|+||+|+..+..+...-.+. +.+ .|+|.-+-....++|..=-|+.-+.|
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~-------------ip~I~s~g~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK-------------IPVISSMGAGGKLDPTRIRVADISKT 153 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC-------------CCEEEEeCCcCCCCCCeEEEccEecc
Confidence 110 11111 011235899999998876554332222 223 33333222333444433234444556
Q ss_pred hhhhHHHHHHHHHHh
Q 014890 222 TNCLAPFVKVLDQKF 236 (416)
Q Consensus 222 Tn~Lap~lkvL~~~f 236 (416)
.+| |+++.+.+..
T Consensus 154 ~~~--pla~~~R~~L 166 (231)
T cd00755 154 SGD--PLARKVRKRL 166 (231)
T ss_pred ccC--cHHHHHHHHH
Confidence 654 7777776665
No 173
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=80.77 E-value=9 Score=42.36 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=25.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-.|.|.| .|.||+.+++.|++++ .+|+++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G---~~Vval~ 111 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLG---FRVRAGV 111 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 34689999 8999999999998875 6777664
No 174
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.52 E-value=6.1 Score=38.87 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=68.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.||..+++.+.... .. |+++.. +.+....+.+ +|- + ..++-+.-.. +
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G---~~~vi~~~~--~~~~~~~~~~----~ga---~--------~~i~~~~~~~---~ 221 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALG---AEDVIGVDP--SPERLELAKA----LGA---D--------FVINSGQDDV---Q 221 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECC--CHHHHHHHHH----hCC---C--------EEEcCCcchH---H
Confidence 48999999999999988777664 45 776643 2233322221 221 0 0111100000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHH
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAP 227 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap 227 (416)
...++. ...++|+||||+|.....+.+-.+++.|.+-+++..+.. +.+-+ ....+.+...|+..-.++...+.-
T Consensus 222 ~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~~~--~~~~~~~~~~i~g~~~~~~~~~~~ 295 (339)
T cd08239 222 EIRELT-SGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE---LTIEV--SNDLIRKQRTLIGSWYFSVPDMEE 295 (339)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC---cccCc--HHHHHhCCCEEEEEecCCHHHHHH
Confidence 000010 113799999999976555566778888775444443321 11111 011222233455444444455555
Q ss_pred HHHHHHH
Q 014890 228 FVKVLDQ 234 (416)
Q Consensus 228 ~lkvL~~ 234 (416)
+++.+.+
T Consensus 296 ~~~~~~~ 302 (339)
T cd08239 296 CAEFLAR 302 (339)
T ss_pred HHHHHHc
Confidence 5555543
No 175
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=80.42 E-value=1.5 Score=45.23 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=24.4
Q ss_pred ccccccccceeEEEEccChhHHHHHHHHHhC
Q 014890 60 YRKVAAQAKLKVAINGFGRIGRNFLRCWHGR 90 (416)
Q Consensus 60 ~~~~~~~m~ikVaINGfGrIGR~vlr~l~~~ 90 (416)
...+...+.-+|||.|+||||+.+++.|...
T Consensus 154 ~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F 184 (336)
T KOG0069|consen 154 WPLGYDLEGKTVGILGLGRIGKAIAKRLKPF 184 (336)
T ss_pred ccccccccCCEEEEecCcHHHHHHHHhhhhc
Confidence 3444445567999999999999999988764
No 176
>PLN02214 cinnamoyl-CoA reductase
Probab=80.33 E-value=7.1 Score=39.16 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|.|-| .|.||+.+++.|.++. .+|+++..
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERG---YTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc---CEEEEEeC
Confidence 35799999 7999999999999875 67777643
No 177
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=79.83 E-value=19 Score=35.06 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=52.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
=+|.|.|.|.+|..+++.+.... ++|+++-+.. +....+-+ +|- + ..++. +.
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g---~~v~~~~~~~--~~~~~~~~----~g~---~--------~~~~~--------~~ 220 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQG---AEVFAFTRSG--EHQELARE----LGA---D--------WAGDS--------DD 220 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEcCCh--HHHHHHHH----hCC---c--------EEecc--------Cc
Confidence 37899999999999888776654 6777775431 22222211 121 0 00110 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEE
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV 186 (416)
+ ...++|++++++|.....+.+..+++.|.+-|
T Consensus 221 ~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v 253 (329)
T cd08298 221 L-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVV 253 (329)
T ss_pred c-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEE
Confidence 0 12378999999887777788889998887444
No 178
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.53 E-value=7.9 Score=37.03 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=26.2
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+|-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g---~~V~~~~r 32 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAG---HDVRGLDR 32 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCC---CeEEEEeC
Confidence 489999 8999999999999874 78888875
No 179
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.93 E-value=2.7 Score=41.76 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||||.|+|.+|+.+++.|.+.. .+|+..|-
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g---~~v~v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGG---HEVVGYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCC---CeEEEEEC
Confidence 38999999999999999998764 67777764
No 180
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=78.73 E-value=2.5 Score=45.61 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-||||.|.|.+|+-++..+.... ++|+..+-
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG---~~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAG---HTVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 37999999999999999887664 78877663
No 181
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=78.39 E-value=10 Score=35.43 Aligned_cols=89 Identities=21% Similarity=0.358 Sum_probs=46.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
..++.|.|||.+||-+++.+.... .. |.|-|. +|- .+++ .. .+|-.+. ...
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~G---a~-V~V~e~-DPi---~alq-A~------------------~dGf~v~--~~~ 73 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLG---AR-VTVTEI-DPI---RALQ-AA------------------MDGFEVM--TLE 73 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT----E-EEEE-S-SHH---HHHH-HH------------------HTT-EEE---HH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCC---CE-EEEEEC-ChH---HHHH-hh------------------hcCcEec--CHH
Confidence 357999999999999999998875 23 334554 332 1221 00 1121111 111
Q ss_pred CCCCCCCCCccccEEEcCCCCCC--CHhhHHHHHHcCCCEEEEcCCCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFV--DREGAGKHIQAGAKKVLITAPGKG 194 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~--s~~~a~~hl~aGAkkVIIsapskd 194 (416)
+-++ ..|++|-+||.-- +.+.. .+++-|| +|.+..+.|
T Consensus 74 --~a~~----~adi~vtaTG~~~vi~~e~~-~~mkdga--il~n~Gh~d 113 (162)
T PF00670_consen 74 --EALR----DADIFVTATGNKDVITGEHF-RQMKDGA--ILANAGHFD 113 (162)
T ss_dssp --HHTT----T-SEEEE-SSSSSSB-HHHH-HHS-TTE--EEEESSSST
T ss_pred --HHHh----hCCEEEECCCCccccCHHHH-HHhcCCe--EEeccCcCc
Confidence 1122 4699999999743 44432 4567788 777666644
No 182
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=78.10 E-value=23 Score=33.51 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||-|.|.|.+|...++.|.+.+ -+|+.|+.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~ 41 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYG---AHIVVISP 41 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 48999999999999999998865 46666764
No 183
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=78.07 E-value=9.8 Score=40.83 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=55.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC-CChhHHh-hhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQAS-HLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~-~~~~~~a-~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
..||+|.|+|+-|+.++|.|.++. .+| .++|. ..++... ..+.+. | |.+..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G---~~v-~v~D~~~~~~~~~~~~~~~~---------------------~--i~~~~ 59 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG---AEV-TVSDDRPAPEGLAAQPLLLE---------------------G--IEVEL 59 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC---CeE-EEEcCCCCccchhhhhhhcc---------------------C--ceeec
Confidence 469999999999999999999875 454 34552 1111000 000000 1 12222
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
.+.+. ..| ...|+|+-+-|...+.+...+..++|++
T Consensus 60 g~~~~-~~~--~~~d~vV~SPGi~~~~p~v~~A~~~gi~ 95 (448)
T COG0771 60 GSHDD-EDL--AEFDLVVKSPGIPPTHPLVEAAKAAGIE 95 (448)
T ss_pred Cccch-hcc--ccCCEEEECCCCCCCCHHHHHHHHcCCc
Confidence 22222 333 3789999999999999999999999994
No 184
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=77.97 E-value=3 Score=41.42 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||||.|+|++|..+++.|.... ++|+..|.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g---~~v~v~dr 31 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDG---HEVVGYDV 31 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCC---CEEEEEEC
Confidence 38999999999999999998764 68877764
No 185
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.87 E-value=9.2 Score=40.79 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=51.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-||.|.|+|++|+..++.|..+. .+|++ .|. ..+....+.+ +| +. + +.| ...
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G---~~v~~-~D~-~~~~~~~l~~----~g-----~~------~-~~~-------~~~ 64 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFG---ARPTV-CDD-DPDALRPHAE----RG-----VA------T-VST-------SDA 64 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCC---CEEEE-EcC-CHHHHHHHHh----CC-----CE------E-EcC-------cch
Confidence 48999999999999999888765 46544 664 2333332221 11 11 1 111 111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
++.+ .+.|+||.+.|.-.+.+......+.|.
T Consensus 65 ~~~l----~~~D~VV~SpGi~~~~p~~~~a~~~gi 95 (488)
T PRK03369 65 VQQI----ADYALVVTSPGFRPTAPVLAAAAAAGV 95 (488)
T ss_pred HhHh----hcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2223 256999999999887776666667776
No 186
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=77.60 E-value=3 Score=44.94 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..+|+|.|+|+|||.+++.+.... ++|++++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~G---a~ViV~e 284 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFG---ARVVVTE 284 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEe
Confidence 468999999999999999998875 6776664
No 187
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=77.47 E-value=3.8 Score=34.12 Aligned_cols=29 Identities=38% Similarity=0.656 Sum_probs=23.7
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|-|.|+|++|+.+++.|.++. .+++.|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~---~~vvvid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG---IDVVVIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT---SEEEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 568999999999999999853 68888875
No 188
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=77.44 E-value=3.1 Score=41.35 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=26.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||||.|+|++|..+.+.|.+.. .+|++.|-
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRG---HDCVGYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCC---CEEEEEEC
Confidence 38999999999999999988764 78877764
No 189
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=77.33 E-value=3 Score=43.49 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=25.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+||.||||||+++.+++.... +.++.-.+.
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~g---m~vI~~dpi 178 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMG---MHVIGYDPI 178 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcC---ceEEeecCC
Confidence 46999999999999999988764 676665544
No 190
>PRK08507 prephenate dehydrogenase; Validated
Probab=77.05 E-value=3.5 Score=40.22 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|+|.+|..+++.|..... ..+|.+++-
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~ 33 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDH 33 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcC
Confidence 389999999999999999987541 246666653
No 191
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=76.79 E-value=6.1 Score=40.45 Aligned_cols=137 Identities=26% Similarity=0.277 Sum_probs=73.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCC-CceEEEEec-C--CChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDS-PLEVVAIND-T--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~-~~~vVaINd-~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
+||+|.|.|.||..++..+..+.-. ++-++-||+ . +..- |-.|+.+. .+....+.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~--------DL~~~~~~-------------~~~~~~i~ 59 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVAL--------DLSHAAAP-------------LGSDVKIT 59 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhc--------chhhcchh-------------ccCceEEe
Confidence 4899999999999999998765433 456666663 1 1121 22222211 11112232
Q ss_pred eccCCCCCCCCCccccEEEcCCCCCCC----Hh------------hHHHHHHcC--CCEEEEcCCCCCCCCeEEeecCcc
Q 014890 145 SNRNPVNLPWGDLGIDLVIEGTGVFVD----RE------------GAGKHIQAG--AKKVLITAPGKGDIPTYVVGVNAD 206 (416)
Q Consensus 145 ~~~~p~~i~W~~~gvDiVie~TG~f~s----~~------------~a~~hl~aG--AkkVIIsapskd~~ptvV~gVN~~ 206 (416)
...+-+++ .|.|+||-+.|.-.- |. .++.-.+.+ ++=+|+|+|. |+-+++.--+-.
T Consensus 60 ~~~~y~~~----~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--D~~ty~~~k~sg 133 (313)
T COG0039 60 GDGDYEDL----KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--DILTYIAMKFSG 133 (313)
T ss_pred cCCChhhh----cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--HHHHHHHHHhcC
Confidence 21122233 388999998876542 22 112222233 2224457776 233333322222
Q ss_pred CCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 207 AYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 207 ~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
. |.+++|. +-|+-=-+++-..|-++|
T Consensus 134 ~--p~~rvig--~gt~LDsaR~~~~lae~~ 159 (313)
T COG0039 134 F--PKNRVIG--SGTVLDSARFRTFLAEKL 159 (313)
T ss_pred C--Cccceec--ccchHHHHHHHHHHHHHh
Confidence 2 4456664 456667788889999998
No 192
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=76.64 E-value=15 Score=39.03 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=29.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..||+|-|||-+|+.+++.+++.. -+||++.|.
T Consensus 207 G~rVaVQG~GNVg~~aa~~l~~~G---Akvva~sds 239 (411)
T COG0334 207 GARVAVQGFGNVGQYAAEKLHELG---AKVVAVSDS 239 (411)
T ss_pred CCEEEEECccHHHHHHHHHHHHcC---CEEEEEEcC
Confidence 469999999999999999998765 699999985
No 193
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=76.59 E-value=7.2 Score=39.27 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=56.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-||-|.| +|++|..+++.+..-+ .+ .+.+||- |++..+ +.|. +.+ +
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g-~~-~v~~V~p-----------------~~~~~~----------v~G~--~~y--~ 53 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYG-TN-IVGGVTP-----------------GKGGTT----------VLGL--PVF--D 53 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCC-CC-EEEEECC-----------------CCCcce----------ecCe--ecc--C
Confidence 4899999 8999999999887764 22 5556772 111111 2232 221 3
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
..+++|..- ++|+++-+.+...-.+-.....++|+|.+||
T Consensus 54 sv~dlp~~~-~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avI 93 (286)
T TIGR01019 54 SVKEAVEET-GANASVIFVPAPFAADAIFEAIDAGIELIVC 93 (286)
T ss_pred CHHHHhhcc-CCCEEEEecCHHHHHHHHHHHHHCCCCEEEE
Confidence 344555321 3799999999887777777888899988765
No 194
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=76.59 E-value=9.8 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|.|.|.||..++..+.... .+++++..
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~G---a~vi~~~~ 215 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFG---LKVTVISS 215 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 37999999999999988777664 56666543
No 195
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=76.30 E-value=3.8 Score=40.62 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=24.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
..||+|.|+|.||+.+++.+..... ..+|.+++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~d 38 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGL-AGEIVGAD 38 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEE
Confidence 3589999999999999999876531 13565554
No 196
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=76.17 E-value=3.1 Score=40.84 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=25.6
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||||.|+|.+|+.+++.|.... ++|+..|-
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G---~~V~~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAG---YQLHVTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCC---CeEEEEcC
Confidence 6999999999999999998764 78877764
No 197
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.81 E-value=4 Score=40.64 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=26.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|+|.+|+.+.+.|.... .+|...|.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r 35 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANG---HRVRVWSR 35 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 58999999999999999998764 57766664
No 198
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=75.44 E-value=2.4 Score=39.14 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred eEEEEccChhHHHHHHHHHhCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~ 91 (416)
||+|.|.|-+|-.++..|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~G 22 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG 22 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC
Confidence 6899999999999999887654
No 199
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=75.42 E-value=9.7 Score=41.88 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=27.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||.|-| .|-||+.+++.|.++. ...+|+++..
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeC
Confidence 46899999 9999999999999863 2378888764
No 200
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=75.36 E-value=4.7 Score=42.36 Aligned_cols=107 Identities=16% Similarity=0.252 Sum_probs=61.3
Q ss_pred EEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCe----EE--ECCEEEEEE
Q 014890 73 ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDG----IS--VDGKVIQVV 144 (416)
Q Consensus 73 ING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~----i~--v~G~~I~v~ 144 (416)
|.| +|-||++.|+.+...+ ++|+|+++.--.+.+.+....+ |...| +- ..+.. +. ..|..++++
T Consensus 1 ILGsTGSIG~qtLdVi~~~~-d~f~v~~Laa~~n~~~L~~q~~~f~p~~------v~-i~~~~~~~~l~~~l~~~~~~v~ 72 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHP-EHFKVVGLTANYNIELLEQQIKRFQPRI------VS-VADKELADTLRTRLSANTSKIT 72 (383)
T ss_pred CCccccHHHHHHHHHHHhCc-cccEEEEEECCCCHHHHHHHHHHhCCCE------EE-EcCHHHHHHHHHhccCCCcEEE
Confidence 568 9999999999887654 3599999976556666555443 22211 11 11100 00 012123343
Q ss_pred eccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 145 SNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 145 ~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
...+ ..++- ....+|+|+-+.-.+...+-.-..+++| |++.+.
T Consensus 73 ~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLA 116 (383)
T PRK12464 73 YGTDGLIAVA-THPGSDLVLSSVVGAAGLLPTIEALKAK-KDIALA 116 (383)
T ss_pred ECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEe
Confidence 3221 11110 1126899999988877777666778888 566554
No 201
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.29 E-value=4 Score=39.43 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
|||||.|+|++|+.+++.|....
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g 23 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSP 23 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC
Confidence 38999999999999999998653
No 202
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.22 E-value=7.1 Score=39.54 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.||+|.|.|.||..++-.+..++. .-|++-++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~-~~el~LiD 35 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGL-ADELVLVD 35 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 599999999999999988876642 12555553
No 203
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.18 E-value=18 Score=35.01 Aligned_cols=84 Identities=19% Similarity=0.149 Sum_probs=52.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|+|.|.+|..+++.+..+. .+++++-. ..+...++.++... .. ++- ++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G---~~vi~~~~--~~~~~~~~~~~g~~-------~~--------~~~--------~~ 208 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTG---PDVVLVGR--HSEKLALARRLGVE-------TV--------LPD--------EA 208 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHHcCCc-------EE--------eCc--------cc
Confidence 47899999999999998887775 67666643 34444444432211 00 000 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
+ .++ .++|+++||+|.-..-+.+..+++.+.+
T Consensus 209 ~--~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~ 240 (319)
T cd08242 209 E--SEG--GGFDVVVEATGSPSGLELALRLVRPRGT 240 (319)
T ss_pred c--ccC--CCCCEEEECCCChHHHHHHHHHhhcCCE
Confidence 0 122 3799999999875555666777877763
No 204
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.03 E-value=3.7 Score=42.40 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=26.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.|+|++|+.+++.|.+++ .+++.|..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g---~~v~vid~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGEN---NDVTVIDT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 48999999999999999998764 68888864
No 205
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=74.75 E-value=4.6 Score=44.39 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=31.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
..+|-|.||||+|+.+.|.+.+++ .++++|.. +++.+..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v~~~ 439 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANK---MRITVLER--DISAVNLM 439 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCC---CCEEEEEC--CHHHHHHH
Confidence 468999999999999999998765 78888863 45544433
No 206
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=74.65 E-value=4.3 Score=39.81 Aligned_cols=102 Identities=25% Similarity=0.431 Sum_probs=59.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC---------ChhHHhhhhcccccccc-CCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG---------GVKQASHLLKYDSTLGI-FEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~---------~~~~~a~LlkyDS~~G~-f~~~v~~~~~~~i~v~ 137 (416)
..||+|=|||.+|+.+++.|.+.. ..||+|.|.. +++.+..+. +. +|. +..- ... .-+
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~G---a~vv~vsD~~G~i~~~~Gld~~~l~~~~--~~-~~~~v~~~----~~~--~~~ 99 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELG---AKVVAVSDSSGAIYDPDGLDVEELLRIK--EE-RGSRVDDY----PLE--SPD 99 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---EEEEEEEESSEEEEETTEEHHHHHHHHH--HH-HSSHSTTG----THT--CSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC---CEEEEEecCceEEEcCCCchHHHHHHHH--HH-hCCccccc----ccc--ccc
Confidence 469999999999999999999875 7999995521 344333321 11 111 1110 000 000
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcCC-CCCCCHhhHHHHHHcCCCEEEE
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGT-GVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~T-G~f~s~~~a~~hl~aGAkkVII 188 (416)
+ .+.+... .++ | +..+||.+=|. +.-++.+.++.-++.|||- |+
T Consensus 100 ~--~~~~~~~--~~i-l-~~~~DiliP~A~~~~I~~~~~~~~i~~~aki-Iv 144 (244)
T PF00208_consen 100 G--AEYIPND--DEI-L-SVDCDILIPCALGNVINEDNAPSLIKSGAKI-IV 144 (244)
T ss_dssp T--SEEECHH--CHG-G-TSSSSEEEEESSSTSBSCHHHCHCHHTT-SE-EE
T ss_pred c--eeEeccc--ccc-c-cccccEEEEcCCCCeeCHHHHHHHHhccCcE-EE
Confidence 0 0111110 111 3 35899999886 7788888888778888864 44
No 207
>PLN00203 glutamyl-tRNA reductase
Probab=74.36 E-value=8.7 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=26.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.||+|.|.|.+|+.+++.|..++- -+|+.+|..
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nRs 299 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNRS 299 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeCC
Confidence 589999999999999999987641 256667753
No 208
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.24 E-value=13 Score=38.63 Aligned_cols=86 Identities=17% Similarity=0.317 Sum_probs=52.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-||.|.|+|.+|+.+++.+.++. .+|.+..+- .+. +.+ .+. .++. . ..+
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~--~~~---~~~----~~~-------~~~~----------~--~~~ 52 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKS--LEA---LQS----CPY-------IHER----------Y--LEN 52 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCC--ccc---cch----hHH-------Hhhh----------h--cCC
Confidence 47999999999999999998875 566555432 110 000 000 0000 0 011
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
++.++ .+.|+||=+.|.--+.+.....+++|++ +++-
T Consensus 53 ~~~~~---~~~dlvV~s~gi~~~~~~l~~A~~~g~~--vv~~ 89 (418)
T PRK00683 53 AEEFP---EQVDLVVRSPGIKKEHPWVQAAIASHIP--VVTD 89 (418)
T ss_pred cHHHh---cCCCEEEECCCCCCCcHHHHHHHHCCCc--EEEH
Confidence 22221 2569999999988777888888899984 4543
No 209
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=74.14 E-value=5.5 Score=39.79 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=24.5
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||+|.|.|.+|+.++..|..++- .-+|+.++-
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D~ 33 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLIDI 33 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeC
Confidence 89999999999999999887642 115655653
No 210
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=73.71 E-value=2.2 Score=40.86 Aligned_cols=103 Identities=15% Similarity=0.128 Sum_probs=50.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhcccc-ccccCCCceee----ecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDS-TLGIFEADVKP----VGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS-~~G~f~~~v~~----~~~~~i~v~G~~I 141 (416)
..||.|.|.|.+|-.+++.|....-+ .+..|.+ ..+++.+..-+-|.. .-|+.+.++-. .-+..+.+.....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 46999999999999999998765422 2222322 223333332221221 23544322100 0112222322222
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHH
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~ 176 (416)
.+. +++++--..++|+||+|+..+.++....
T Consensus 99 ~i~----~~~~~~~~~~~DvVi~~~d~~~~r~~l~ 129 (228)
T cd00757 99 RLD----AENAEELIAGYDLVLDCTDNFATRYLIN 129 (228)
T ss_pred eeC----HHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 221 1111111236899999999886655443
No 211
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=73.31 E-value=5.2 Score=39.57 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=30.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhhh
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~Ll 113 (416)
|.+||+|.|+|.+|..+++.|.+.+- ..-+|.+.|. +.+.+..+.
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r--~~~~~~~l~ 46 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL--NVSNLKNAS 46 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC--CHHHHHHHH
Confidence 55699999999999999999987541 1235666653 344443433
No 212
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.17 E-value=5 Score=39.42 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=25.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|.|.+|..+...|.... .+|..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g---~~V~~~~r 32 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNG---HDVTLWAR 32 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEEC
Confidence 59999999999999999998764 56655653
No 213
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.86 E-value=5.4 Score=44.10 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=29.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHh
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS 110 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a 110 (416)
.-+|-|.||||+|+.+.|.|.+++ +++++|.. +++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g---~~vvvID~--d~~~v~ 437 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSG---VKMTVLDH--DPDHIE 437 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCC---CCEEEEEC--CHHHHH
Confidence 458999999999999999998875 78888853 444443
No 214
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=72.44 E-value=2.3 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||+|.|.|-+|-.++..|....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~G 51 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSG 51 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999987654
No 215
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=72.27 E-value=16 Score=37.80 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=52.4
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEE-ecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI-NDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaI-Nd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
+..+|-|-| .|-||.-+++.|++|+ -.|.|- -|..+.+...||.+.+.. .+ .++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG---Y~V~gtVR~~~~~k~~~~L~~l~~a-----------~~--------~l~l~ 62 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG---YTVRGTVRDPEDEKKTEHLRKLEGA-----------KE--------RLKLF 62 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC---CEEEEEEcCcchhhhHHHHHhcccC-----------cc--------cceEE
Confidence 346899999 8999999999999996 577664 446666667788765531 01 11111
Q ss_pred e--ccCCCCCCCCCccccEEEcCCCCC
Q 014890 145 S--NRNPVNLPWGDLGIDLVIEGTGVF 169 (416)
Q Consensus 145 ~--~~~p~~i~W~~~gvDiVie~TG~f 169 (416)
. ..|+..|+=.-.|+|+||-++-.+
T Consensus 63 ~aDL~d~~sf~~ai~gcdgVfH~Asp~ 89 (327)
T KOG1502|consen 63 KADLLDEGSFDKAIDGCDGVFHTASPV 89 (327)
T ss_pred eccccccchHHHHHhCCCEEEEeCccC
Confidence 1 234444444456788888765543
No 216
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.91 E-value=5.8 Score=38.87 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=26.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCC-CCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd 102 (416)
+||+|.|.|.+|+.+++.|...+ ....+|+..|.
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 58999999999999999998763 11246666664
No 217
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=71.85 E-value=2.9 Score=41.70 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..+|.|.|.|-+|-.++..|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~G 53 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTG 53 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999987654
No 218
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=71.80 E-value=7.1 Score=41.15 Aligned_cols=111 Identities=17% Similarity=0.255 Sum_probs=64.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-cccccccCCCceeeecCCe----EE--EC--C
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGIFEADVKPVGTDG----IS--VD--G 138 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~f~~~v~~~~~~~----i~--v~--G 138 (416)
.||+|.| +|-||++.|+.+...+ .+|+|+++---.+.+.++.+.+ |...+ +- ..+.. +. .. |
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~-~~f~v~~Laa~~n~~~L~~q~~~f~p~~------v~-i~d~~~~~~l~~~l~~~~ 73 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNP-DHFQVVALSAGKNVALMVEQILEFRPKF------VA-IDDEASLKDLKTMLQQQG 73 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCc-cccEEEEEEcCCCHHHHHHHHHHcCCCE------EE-EcCHHHHHHHHHHhhcCC
Confidence 4899999 9999999999887654 3599999976556665555442 22211 11 11100 00 01 2
Q ss_pred EEEEEEeccC-CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 139 KVIQVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 139 ~~I~v~~~~~-p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
..++|+...+ ..++- ....+|+|+-+.-.+....---..+++| |++-+.
T Consensus 74 ~~~~v~~G~~~l~~l~-~~~~~D~vv~AivG~aGL~pt~~Ai~~g-k~iaLA 123 (389)
T TIGR00243 74 SRTEVLVGEEGICEMA-ALEDVDQVMNAIVGAAGLLPTLAAIRAG-KTIALA 123 (389)
T ss_pred CCcEEEECHHHHHHHH-cCCCCCEEEEhhhcHhhHHHHHHHHHCC-CcEEEe
Confidence 1234443221 11110 1125899999987777776666777888 555554
No 219
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=71.25 E-value=0.67 Score=40.43 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=54.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhcccc-ccccCCCceeeecCCeEEEC-CEEEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDS-TLGIFEADVKPVGTDGISVD-GKVIQVVS 145 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS-~~G~f~~~v~~~~~~~i~v~-G~~I~v~~ 145 (416)
.||.|.|.|.+|-.+++.|....-. ++.-+.+ ..+++.+.+-+-|.. .-|+.+.+. ....--.++ +-.+..+.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~--~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~--~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVG--KITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEA--AKERLQEINPDVEVEAIP 78 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTS--EEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHH--HHHHHHHHSTTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCC--ceeecCCcceeecccccccccccccchhHHHHH--HHHHHHHhcCceeeeeee
Confidence 5899999999999999998765422 3434544 446666665333332 235544321 001001111 22233332
Q ss_pred ccC-CCCCCCCC-ccccEEEcCCCCCCCHhhHHHHH
Q 014890 146 NRN-PVNLPWGD-LGIDLVIEGTGVFVDREGAGKHI 179 (416)
Q Consensus 146 ~~~-p~~i~W~~-~gvDiVie~TG~f~s~~~a~~hl 179 (416)
..- ++++ +.. .+.|+||+|+..+..+.....+.
T Consensus 79 ~~~~~~~~-~~~~~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 79 EKIDEENI-EELLKDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp SHCSHHHH-HHHHHTSSEEEEESSSHHHHHHHHHHH
T ss_pred cccccccc-cccccCCCEEEEecCCHHHHHHHHHHH
Confidence 211 1111 111 37899999999876665554433
No 220
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.15 E-value=4.5 Score=39.48 Aligned_cols=128 Identities=16% Similarity=0.162 Sum_probs=61.8
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCceeeecCCeEEEC-CEEEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVD-GKVIQVVSN 146 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~i~v~-G~~I~v~~~ 146 (416)
||.|.|.|-+|-.+++.|...+-+++. .|.+ ..+...+..-+-|. +.-|+.+.++- ...--.++ +-.|.....
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~--ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va--~~~l~~~np~v~i~~~~~ 76 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIH--VIDMDTIDVSNLNRQFLFRPKDIGRPKSEVA--AEAVNDRNPNCKVVPYQN 76 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEE--EEeCCEEcchhhccccCCChhhCChHHHHHH--HHHHHHHCCCCEEEEEec
Confidence 689999999999999998765432233 2432 33444444333232 23465544321 00000011 111111111
Q ss_pred c-CC-CCCC-CCCccccEEEcCCCCCCCHhhHHHH-HHcCCCEEEEcCCC---CCCCCeEEeec
Q 014890 147 R-NP-VNLP-WGDLGIDLVIEGTGVFVDREGAGKH-IQAGAKKVLITAPG---KGDIPTYVVGV 203 (416)
Q Consensus 147 ~-~p-~~i~-W~~~gvDiVie~TG~f~s~~~a~~h-l~aGAkkVIIsaps---kd~~ptvV~gV 203 (416)
+ ++ .+++ --..+.|+||+|+..+..+.+.... .+.+. -+|++.. ++..-.+++|.
T Consensus 77 ~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~i--plI~~g~~G~~G~v~vi~p~~ 138 (234)
T cd01484 77 KVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIV--PLIESGTEGFKGNAQVILPGM 138 (234)
T ss_pred cCChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEcccCCceEEEEEcCCC
Confidence 1 00 1111 0124789999999988776654432 23443 3455443 22334555554
No 221
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=71.03 E-value=12 Score=39.80 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=54.1
Q ss_pred ceeEEEEcc----ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEE
Q 014890 68 KLKVAINGF----GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 68 ~ikVaINGf----GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v 143 (416)
+-+|+|+|. |.+|+.+++.+.+..-. =+|..||-- |+. +.|. ++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~-g~v~~Vnp~-----------~~~------------------i~G~--~~ 54 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYK-GKIYPVNPK-----------AGE------------------ILGV--KA 54 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCC-CcEEEECCC-----------CCc------------------cCCc--cc
Confidence 347999995 88999999999875410 167778732 122 2221 11
Q ss_pred EeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 144 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 144 ~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+ .+.+++| ..+|+++-+++.....+-.+...+.|+|.+||
T Consensus 55 ~--~sl~~lp---~~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi 94 (447)
T TIGR02717 55 Y--PSVLEIP---DPVDLAVIVVPAKYVPQVVEECGEKGVKGAVV 94 (447)
T ss_pred c--CCHHHCC---CCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE
Confidence 1 2233343 36788888888777777777777788888765
No 222
>PLN02602 lactate dehydrogenase
Probab=70.88 E-value=9 Score=39.60 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=70.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCC-CCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||+|.|.|.||..++-.+..++- +.+-++-||+- ...+..+ |-.|.. .+.+. +.|....
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~---~~~g~a~--DL~~~~-------------~~~~~-~~i~~~~ 98 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD---KLRGEML--DLQHAA-------------AFLPR-TKILAST 98 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc---hhhHHHH--HHHhhh-------------hcCCC-CEEEeCC
Confidence 599999999999999988876642 22444444431 0011111 322221 01111 1222222
Q ss_pred CCCCCCCCCccccEEEcCCCCCC----CHh------------hHHHHHHcC--CCEEEEcCCCCCCCCeEEeecCccCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFV----DRE------------GAGKHIQAG--AKKVLITAPGKGDIPTYVVGVNADAYK 209 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~----s~~------------~a~~hl~aG--AkkVIIsapskd~~ptvV~gVN~~~y~ 209 (416)
+.+++ .+.|+||-+.|.-. +|. .++.-.+.+ +.-+++|+|. |.-+.+. -....+
T Consensus 99 dy~~~----~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv--dv~t~~~-~k~sg~- 170 (350)
T PLN02602 99 DYAVT----AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV--DVLTYVA-WKLSGF- 170 (350)
T ss_pred CHHHh----CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch--HHHHHHH-HHHhCC-
Confidence 33333 38899999999743 332 222222333 3345557775 2222222 111112
Q ss_pred CCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 210 PDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 210 ~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
+.++||. .||.-=-+.+-..|.+++
T Consensus 171 p~~rviG--~gt~LDs~R~r~~lA~~l 195 (350)
T PLN02602 171 PANRVIG--SGTNLDSSRFRFLIADHL 195 (350)
T ss_pred CHHHEEe--ecchHHHHHHHHHHHHHh
Confidence 2346663 566666778888888888
No 223
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=70.70 E-value=6 Score=40.42 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
|.++|-|.|||.+|+..+|.+...+ .+|+|+.=+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akp--e~elvgawv~ 35 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKP--ELELVGAWVH 35 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCC--CCceEEEEec
Confidence 6789999999999999999999864 4999987654
No 224
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=70.63 E-value=7.7 Score=37.72 Aligned_cols=93 Identities=19% Similarity=0.084 Sum_probs=55.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
++++|.|+|.||..+.+.|.... .||+-.|.- +++..+-+.+|=. .. |.. ...
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag---~eV~igs~r-~~~~~~a~a~~l~--------------~~-------i~~--~~~ 54 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG---HEVIIGSSR-GPKALAAAAAALG--------------PL-------ITG--GSN 54 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC---CeEEEecCC-ChhHHHHHHHhhc--------------cc-------ccc--CCh
Confidence 68999999999999999998764 677666542 4444443332210 00 111 111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
++ .-...|+||-+.+-.--..-++.+.+.=--|+||+...
T Consensus 55 ~d----A~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tn 94 (211)
T COG2085 55 ED----AAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATN 94 (211)
T ss_pred HH----HHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCC
Confidence 11 12356888888876655555555554212578997553
No 225
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=70.61 E-value=6.6 Score=36.40 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=23.1
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||||.|.|.+|+.++..+...+ ++|+.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G---~~V~l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG---YEVTLYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT---SEEEEE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCC---CcEEEEEC
Confidence 7999999999999998887764 77666653
No 226
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.42 E-value=6.9 Score=36.86 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=53.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCceeeecCCeEEEC-CEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVD-GKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~i~v~-G~~I~v~ 144 (416)
..||.|.|.|.+|..+++.|....-+ ++..+.+ ..+.+.+..-+-|+ +.-|+.+.+. ..+.--.+| .-.+...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~--~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV--AAQRLRELNSDIQVTAL 96 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCCEEcccchhhhhccChhhCCChHHHH--HHHHHHHhCCCCEEEEe
Confidence 45899999999999999998876422 4444543 33444444322222 1224332211 000000011 1122222
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHH
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~ 177 (416)
... ++++++.-..+.|+||+|+..+..+.....
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~ 130 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTDNFATRYLIND 130 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 111 112222112478999999998876655443
No 227
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=70.31 E-value=6.1 Score=36.95 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=22.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.|.|.+|-.++-++.+.. ++|+++-
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G---~~V~g~D 30 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG---HQVIGVD 30 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT---SEEEEE-
T ss_pred CEEEEECCCcchHHHHHHHHhCC---CEEEEEe
Confidence 69999999999998887777765 7888874
No 228
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=70.23 E-value=9.3 Score=38.50 Aligned_cols=96 Identities=23% Similarity=0.225 Sum_probs=51.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.||...+..+.... . .|+++.. +.+.+..+.+ +|- + -.++...-... +
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G---~~~Vi~~~~--~~~r~~~a~~----~Ga---~--------~~i~~~~~~~~--~ 250 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAG---ASQVVAVDL--NEDKLALARE----LGA---T--------ATVNAGDPNAV--E 250 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEcC--CHHHHHHHHH----cCC---c--------eEeCCCchhHH--H
Confidence 37999999999999888777654 4 4655532 3333333322 221 0 01111000000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
...++. ..++|+||||+|.-...+.+-..++.|.+-|++
T Consensus 251 ~i~~~~--~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 251 QVRELT--GGGVDYAFEMAGSVPALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHHh--CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEE
Confidence 000111 127899999999755556666777777643444
No 229
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=70.12 E-value=22 Score=35.49 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=69.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe-cc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS-NR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~-~~ 147 (416)
-+|.|.|.|.||...+..+.... ..|+++.. +.+.+..+.+ +|- + ..++-+...... .+
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G---~~vi~~~~--~~~~~~~~~~----~Ga-~----------~~i~~~~~~~~~~~~ 227 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMG---AAVVAIDI--DPEKLEMMKG----FGA-D----------LTLNPKDKSAREVKK 227 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEcC--CHHHHHHHHH----hCC-c----------eEecCccccHHHHHH
Confidence 47999999999999988887764 56766632 3344433322 221 0 011110000000 00
Q ss_pred CCCCCCCCCcccc----EEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCcc-CCCCCCCeEecCCcch
Q 014890 148 NPVNLPWGDLGID----LVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKPDEPIISNASCTT 222 (416)
Q Consensus 148 ~p~~i~W~~~gvD----iVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~-~y~~~~~IISnaSCTT 222 (416)
...++ ....|+| +||||+|.-...+.+-..++.|.+=+++..+... .+ ++.. .+..+..++.+-.|+.
T Consensus 228 ~~~~~-t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~-----~~~~~~~~~~~~~~g~~~~~~ 300 (349)
T TIGR03201 228 LIKAF-AKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAK-TE-----YRLSNLMAFHARALGNWGCPP 300 (349)
T ss_pred HHHhh-cccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCC-cc-----cCHHHHhhcccEEEEEecCCH
Confidence 00000 0113554 8999999866566667788888744444333321 11 1111 1222234665555665
Q ss_pred hhhHHHHHHHHH
Q 014890 223 NCLAPFVKVLDQ 234 (416)
Q Consensus 223 n~Lap~lkvL~~ 234 (416)
..+..+++.|.+
T Consensus 301 ~~~~~~~~~i~~ 312 (349)
T TIGR03201 301 DRYPAALDLVLD 312 (349)
T ss_pred HHHHHHHHHHHc
Confidence 556666666654
No 230
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.00 E-value=8.1 Score=39.32 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.0
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhC
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGR 90 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~ 90 (416)
+.||+|.|. |.||..++-.+..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~ 25 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG 25 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 579999997 99999999888754
No 231
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=69.97 E-value=2.3 Score=43.45 Aligned_cols=118 Identities=17% Similarity=0.109 Sum_probs=57.9
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccc---cccCCCceee----ecCCeEEECCEEE
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDST---LGIFEADVKP----VGTDGISVDGKVI 141 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~---~G~f~~~v~~----~~~~~i~v~G~~I 141 (416)
||.|.|.|-+|-.+++.|..-.-+ +|+-+.+ ..+.+.+..-+-|+.. -|+.+.+.-. --+..+.+.+...
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg--~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~ 78 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVL 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeee
Confidence 689999999999999999765422 2222322 2233333332212221 2554321100 0122233333322
Q ss_pred EEE-------------eccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 142 QVV-------------SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 142 ~v~-------------~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
.|- ...+++++.=--.+.|+||+||..+-+| +...-+..-.+|.+|++
T Consensus 79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR-~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESR-WLPTLLSAAKNKLVINA 139 (307)
T ss_pred eccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHH-HHHHHHHHHhCCcEEEE
Confidence 220 0011211111124789999999998876 44444443345567764
No 232
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=69.73 E-value=7.1 Score=42.21 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+++=+|-|.|+|++||.+.|.+.+++ .+++.|..
T Consensus 415 ~~~~hiiI~G~G~~G~~la~~L~~~g---~~vvvId~ 448 (558)
T PRK10669 415 DICNHALLVGYGRVGSLLGEKLLAAG---IPLVVIET 448 (558)
T ss_pred ccCCCEEEECCChHHHHHHHHHHHCC---CCEEEEEC
Confidence 34558999999999999999998875 68888864
No 233
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=69.73 E-value=6.1 Score=39.36 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=24.5
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
||||.|.|++|..+++.|.+.. ++|...|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~ 30 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAG---HQLHVTT 30 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CeEEEEe
Confidence 7999999999999999998764 5766555
No 234
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.87 E-value=11 Score=38.11 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred eEEEEccChhHHHHHHHHHhCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~ 91 (416)
||+|.|.|.||..++..+..++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~ 22 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALG 22 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcC
Confidence 7999999999999988887664
No 235
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=68.82 E-value=29 Score=37.84 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=24.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-||.|.|.|.||...++.+.... -+|+++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D 195 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFD 195 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEe
Confidence 569999999999999999888765 3555543
No 236
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=68.67 E-value=6.3 Score=40.57 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=25.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|||.|+|.+|+.+++.|.... ++|+..+.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG---~~Vvv~~r 48 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSG---VDVVVGLR 48 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCC---CEEEEEEC
Confidence 57999999999999999998764 78766554
No 237
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=68.41 E-value=3.4 Score=40.24 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=51.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhcc-ccccccCCCcee---e-ecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVK---P-VGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Llky-DS~~G~f~~~v~---~-~~~~~i~v~G~~I 141 (416)
..||.|.|.|-+|..+++.|..-.-+ ++..|.+ ..+.+.+..-+-| +..-|+.+.++- + .-+..+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i----- 104 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVG--TLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAI----- 104 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEE-----
Confidence 45999999999999999998765422 3333433 3344444433333 122354432210 0 00122222
Q ss_pred EEEecc-CCCCCCCCCccccEEEcCCCCCCCHhhH
Q 014890 142 QVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGA 175 (416)
Q Consensus 142 ~v~~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a 175 (416)
.....+ ++.+++--..+.|+||+|+..+..+...
T Consensus 105 ~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~l 139 (245)
T PRK05690 105 ETINARLDDDELAALIAGHDLVLDCTDNVATRNQL 139 (245)
T ss_pred EEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHH
Confidence 222111 1111110013789999999988766533
No 238
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.30 E-value=7.8 Score=38.14 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=26.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCC-CCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd 102 (416)
+||+|.|+|.+|..+++.|.+.. ....+|++++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 58999999999999999988753 11246777765
No 239
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=67.90 E-value=8.1 Score=36.52 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=24.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.| .|.+|..+++.|.+.. .+|+..+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~ 31 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGS 31 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEE
Confidence 4899997 9999999999998764 4665554
No 240
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=67.84 E-value=6.5 Score=40.83 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||+|.|.|.+|..++..|.+.. .+|++++-
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G---~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLG---HEVTGVDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcC---CeEEEEEC
Confidence 48999999999999999998764 67877763
No 241
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=67.48 E-value=7.6 Score=38.85 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||+|.|.|.+|..+...|.... .+|..++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G---~~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKG---VPVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CeEEEEeC
Confidence 58999999999999999988764 67777775
No 242
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=67.01 E-value=8 Score=38.09 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=26.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||||.|.|.+|..+++.+.... .+|+.++-
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G---~~V~~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAG---MDVWLLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC---CeEEEEeC
Confidence 37999999999999999988764 78777764
No 243
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=66.88 E-value=11 Score=37.99 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.5
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||+|.|. |.+|..++..+...+- ..+|+.+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd 33 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLIS 33 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEE
Confidence 58999995 9999999999987642 12566654
No 244
>PRK07201 short chain dehydrogenase; Provisional
Probab=66.84 E-value=38 Score=36.70 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
|||-|-| .|-||+.+++.|.... ...+|+++...
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~R~ 35 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLVRR 35 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEECc
Confidence 3799999 8999999999998521 12677777653
No 245
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=66.78 E-value=11 Score=37.15 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=26.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||-|.| .|.||+.+.+.+.+++ +++++++
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~~ 31 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIATS 31 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEeC
Confidence 6999999 8999999999988764 8999995
No 246
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=66.53 E-value=7.6 Score=38.54 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=25.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||+|.|.|.+|..+++.|.+.. .+|.+.|.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~ 32 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDV 32 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcC
Confidence 38999999999999999998764 67776764
No 247
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=66.37 E-value=28 Score=36.10 Aligned_cols=84 Identities=24% Similarity=0.359 Sum_probs=49.1
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHh---hhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS---HLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a---~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
||.|.|.|.+|+.++|.|.++. .+| .+.|....+... .+++. . .| |.+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G---~~V-~~sD~~~~~~~~~~~~~~~~---------------~-----~g--i~~~~g 54 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKG---AEV-TVTDLKPNEELEPSMGQLRL---------------N-----EG--SVLHTG 54 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCC---CEE-EEEeCCCCccchhHHHHHhh---------------c-----cC--cEEEec
Confidence 5889999999999999998875 564 456642211110 11110 0 01 111112
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
.+++++. +.|+||=+.|.-.+.+......+.|.
T Consensus 55 ~~~~~~~----~~d~vv~sp~i~~~~p~~~~a~~~~i 87 (433)
T TIGR01087 55 LHLEDLN----NADLVVKSPGIPPDHPLVQAAAKRGI 87 (433)
T ss_pred CchHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 3344442 57999999999776665555566665
No 248
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=66.30 E-value=11 Score=39.65 Aligned_cols=44 Identities=30% Similarity=0.374 Sum_probs=35.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhh
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Ll 113 (416)
.|+.|.| +|-||.+.|+.+...++ .|+|+++.--..++.+....
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~-~f~vval~ag~n~~~l~~q~ 46 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPD-KFEVVALAAGKNVELLAEQI 46 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCC-cEEEEEEecCCcHHHHHHHH
Confidence 5899999 99999999999988763 59999998765666655544
No 249
>PLN02740 Alcohol dehydrogenase-like
Probab=66.13 E-value=14 Score=37.51 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=23.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|+|.|.||...++.+.... . +|+++.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G---~~~Vi~~~ 230 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARG---ASKIIGVD 230 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCcEEEEc
Confidence 47999999999999988877664 4 466663
No 250
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=65.90 E-value=21 Score=36.47 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|.|.|.||...++.+.... .+++++-
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~G---a~Vi~~~ 209 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFG---LRVTVIS 209 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcC---CeEEEEe
Confidence 37899999999999988877764 5676664
No 251
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=65.75 E-value=2.6 Score=39.91 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||+|.|.|.+|..++..|....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~G 44 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAG 44 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcC
Confidence 468999999999999999887654
No 252
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=65.33 E-value=8.5 Score=40.36 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=27.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|.|.+|..++.+|.+.. .+|++++-
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G---~~V~~~D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQ---KQVIGVDI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCC---CEEEEEeC
Confidence 68999999999999999998875 78888874
No 253
>PRK08618 ornithine cyclodeaminase; Validated
Probab=65.01 E-value=15 Score=37.22 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=24.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
-+|+|.|.|.+||..++++.... +++-|.|=+.
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~--~~~~v~v~~r 160 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR--DIERVRVYSR 160 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC--CccEEEEECC
Confidence 58999999999999998876432 2555555443
No 254
>PRK05865 hypothetical protein; Provisional
Probab=64.90 E-value=19 Score=41.57 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=26.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G---~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQG---HEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc---CEEEEEEC
Confidence 4899999 8999999999998875 68877754
No 255
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=64.71 E-value=31 Score=34.46 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=23.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaIN 101 (416)
-+|.|.|.|.||..++..+.... .+ |+++.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G---~~~Vi~~~ 208 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAG---ASKIIAVD 208 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999988777664 54 66664
No 256
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=64.46 E-value=14 Score=37.85 Aligned_cols=110 Identities=16% Similarity=0.135 Sum_probs=56.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccccc-c--ccCCCc-----eeeecCCeEEECC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDST-L--GIFEAD-----VKPVGTDGISVDG 138 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyDS~-~--G~f~~~-----v~~~~~~~i~v~G 138 (416)
..||.|.|.|.+|..++..|....-+ +|..|.+ ..+...+..-+-|+.. - |+.+.. ++ .-+..+.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~-~inp~v~v-- 98 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLE-EINSDVRV-- 98 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHH-HHCCCcEE--
Confidence 46899999999999999988765421 5555554 3355444433323211 1 111111 00 00122222
Q ss_pred EEEEEEecc-CCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCCE
Q 014890 139 KVIQVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKK 185 (416)
Q Consensus 139 ~~I~v~~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~-~hl~aGAkk 185 (416)
.....+ ++.++.--..+.|+||+||..+.++...- ...+.|.+-
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~ 144 (339)
T PRK07688 99 ---EAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPW 144 (339)
T ss_pred ---EEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCE
Confidence 221111 12221111247899999999987775443 334456543
No 257
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=64.41 E-value=8.9 Score=38.99 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.||||.|+|.+|+.+++.|.... ++++..++.
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG---~~Viv~~~~ 35 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSG---LNVIVGLRK 35 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCC---CeEEEEECc
Confidence 47999999999999999998764 676554543
No 258
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=64.31 E-value=21 Score=35.07 Aligned_cols=93 Identities=18% Similarity=0.169 Sum_probs=52.0
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
+|.|.|.|.+|..+++.+.... .+++++... .+....+-+ +|- + -.++.++-.+. +..
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~--~~~~~~~~~----~g~----------~-~~i~~~~~~~~--~~~ 223 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKMG---FRTVAISRG--SDKADLARK----LGA----------H-HYIDTSKEDVA--EAL 223 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHCC---CeEEEEeCC--hHHHHHHHH----cCC----------c-EEecCCCccHH--HHH
Confidence 7999999999999988887765 577776542 223333322 121 0 01121110000 001
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
..| .++|+++||+|.-...+.+-.++..|.+-|.+
T Consensus 224 --~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 224 --QEL--GGAKLILATAPNAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred --Hhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEE
Confidence 112 26899999987555556666777776643434
No 259
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=64.21 E-value=28 Score=35.01 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=51.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|+|.|.||..+++.+.... ..++++-+. .+....+++ .+|- +.. ++... ...
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~G---~~vi~~~~~--~~~~~~~~~---~~Ga---~~~--------i~~~~-----~~~ 237 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAMG---HHVTVISSS--DKKREEALE---HLGA---DDY--------LVSSD-----AAE 237 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CeEEEEeCC--HHHHHHHHH---hcCC---cEE--------ecCCC-----hHH
Confidence 47899999999999988877664 566666532 222222221 1221 100 11000 000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
...+. .++|+||||+|.-.+.+.+-..++.|.+-|++
T Consensus 238 ~~~~~---~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 238 MQEAA---DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred HHHhc---CCCcEEEECCCchHHHHHHHHHhccCCEEEEE
Confidence 00111 26899999999655555566677777644444
No 260
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=64.21 E-value=10 Score=37.78 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=23.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
++||+|.|.|.||..+...|.+.. .++.+++-
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r 36 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLR 36 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEe
Confidence 469999999999999988887653 23444443
No 261
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=64.11 E-value=12 Score=39.88 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=25.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
+..|.+.| +|++||.+.+.|.+|. +.+.+.
T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg---f~vra~ 109 (411)
T KOG1203|consen 79 PTTVLVVGATGKVGRRIVKILLKRG---FSVRAL 109 (411)
T ss_pred CCeEEEecCCCchhHHHHHHHHHCC---Ceeeee
Confidence 57899999 9999999999999986 666544
No 262
>PTZ00325 malate dehydrogenase; Provisional
Probab=63.94 E-value=49 Score=33.85 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=70.7
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||+|.|. |+||..++..+..++. .-+++-+. ...++ +..+ |-.|+.. ...+....
T Consensus 9 ~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~D-i~~~~--g~a~--Dl~~~~~-----------------~~~v~~~t 65 (321)
T PTZ00325 9 FKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYD-IVGAP--GVAA--DLSHIDT-----------------PAKVTGYA 65 (321)
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEe-cCCCc--cccc--chhhcCc-----------------CceEEEec
Confidence 49999997 9999999887775431 12443333 10000 0001 2111110 01122222
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCH-----h-----------hHHHHHHcCCCEEEE--cCCCCCCCCeEEee---cCcc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDR-----E-----------GAGKHIQAGAKKVLI--TAPGKGDIPTYVVG---VNAD 206 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~-----~-----------~a~~hl~aGAkkVII--sapskd~~ptvV~g---VN~~ 206 (416)
++.+.-=.-.|.|+||-+.|.-... + -.+.-.+.|.+++|+ |+|. |.-+.+.. -...
T Consensus 66 d~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv--dv~~~~~~~~~~~~s 143 (321)
T PTZ00325 66 DGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV--NSTVPIAAETLKKAG 143 (321)
T ss_pred CCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH--HHHHHHHHhhhhhcc
Confidence 3221000124899999999985541 1 112233468888766 4443 22222221 0111
Q ss_pred CCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 207 AYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 207 ~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
.+ +.+++|..+ |-=-+++-..|-+++
T Consensus 144 g~-p~~~viG~g---~LDs~R~r~~la~~l 169 (321)
T PTZ00325 144 VY-DPRKLFGVT---TLDVVRARKFVAEAL 169 (321)
T ss_pred CC-Chhheeech---hHHHHHHHHHHHHHh
Confidence 22 236788662 477789999999999
No 263
>PRK07877 hypothetical protein; Provisional
Probab=63.75 E-value=3.8 Score=46.37 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=55.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCC-CCceEEEEe-cCCChhHHhhhhccccccccCCCceeeecCCeEEECC-EEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAIN-DTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~-~~~~vVaIN-d~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G-~~I~v~ 144 (416)
..||+|.|.| +|-.++..|....- +.+. -|. |..++.++-..+--.+..|+.+..+ ....-..+|- -.|..+
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~--lvD~D~ve~sNLnRq~~~~~diG~~Kv~~--a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELR--LADFDTLELSNLNRVPAGVFDLGVNKAVV--AARRIAELDPYLPVEVF 181 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEE--EEcCCEEcccccccccCChhhcccHHHHH--HHHHHHHHCCCCEEEEE
Confidence 5699999999 99999988775541 2222 232 1223333323221122345554322 1111112231 233333
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHH-HHHcCC
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGA 183 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~-hl~aGA 183 (416)
.+. ++++++=-..++|+||||+-.|-++-.... ..+.|.
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~i 222 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRI 222 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 322 233332112479999999999977754443 234454
No 264
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=63.57 E-value=9.5 Score=37.98 Aligned_cols=31 Identities=32% Similarity=0.308 Sum_probs=26.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||+|.|.|.+|..+...+..++ .+|+.++-
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G---~~V~v~d~ 33 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG---HEVRLWDA 33 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC---CeeEEEeC
Confidence 38999999999999999988775 67777764
No 265
>PRK07680 late competence protein ComER; Validated
Probab=63.27 E-value=9.7 Score=37.12 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=20.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
|||+|.|.|.+|+.+++.|.+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g 23 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESG 23 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCC
Confidence 37999999999999999988653
No 266
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=62.67 E-value=9.2 Score=37.44 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=49.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.+|..+++.+..+. + .++++ +. ..+....+.+ +|.. .++.+.-.. .+
T Consensus 169 ~~vlI~g~g~vg~~~~~~a~~~g---~~~v~~~-~~-~~~~~~~~~~----~g~~------------~~~~~~~~~--~~ 225 (344)
T cd08284 169 DTVAVIGCGPVGLCAVLSAQVLG---AARVFAV-DP-VPERLERAAA----LGAE------------PINFEDAEP--VE 225 (344)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CceEEEE-cC-CHHHHHHHHH----hCCe------------EEecCCcCH--HH
Confidence 47999999999999999888764 4 67777 32 2333333332 2210 011000000 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
...++. ...++|++|||+|.-...+.+..+++.+.
T Consensus 226 ~l~~~~-~~~~~dvvid~~~~~~~~~~~~~~l~~~g 260 (344)
T cd08284 226 RVREAT-EGRGADVVLEAVGGAAALDLAFDLVRPGG 260 (344)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHhcccCC
Confidence 000000 12478999999996444455667776665
No 267
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=62.62 E-value=34 Score=35.97 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=48.6
Q ss_pred eeEEEEccChhHHH-HHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||.|.|.|..|+. ++|.|.++. .+| .+.|....+....|.++ | |.+....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G---~~V-~~~D~~~~~~~~~l~~~----------------------g--i~~~~~~ 59 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLG---YKV-SGSDLKESAVTQRLLEL----------------------G--AIIFIGH 59 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCC---CeE-EEECCCCChHHHHHHHC----------------------C--CEEeCCC
Confidence 47999999999999 799888875 564 45654222222232211 1 1111122
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
+++.+ .+.|+||=+.|.-.+.+......+.|.
T Consensus 60 ~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~~i 91 (461)
T PRK00421 60 DAENI----KDADVVVYSSAIPDDNPELVAARELGI 91 (461)
T ss_pred CHHHC----CCCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 23333 257888888888776655555555554
No 268
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=62.45 E-value=5.2 Score=38.95 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=52.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCcee---e-ecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVK---P-VGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~---~-~~~~~i~v~G~~I 141 (416)
..||.|.|.|-+|..++..|....-+ +++.+.+ ..++..+..-+-|+ +.-|+.+.++- + .-+..+.+
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i----- 96 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAI----- 96 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEE-----
Confidence 35899999999999999998865422 3333432 33443343322232 33454433210 0 01222222
Q ss_pred EEEecc-CCCCCCCCCccccEEEcCCCCCCCHhhHH
Q 014890 142 QVVSNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAG 176 (416)
Q Consensus 142 ~v~~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~ 176 (416)
.....+ ++++++=-..+.|+||+|+..+.++....
T Consensus 97 ~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln 132 (240)
T TIGR02355 97 NPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLN 132 (240)
T ss_pred EEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHH
Confidence 222211 11111100137899999999987765443
No 269
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.45 E-value=11 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=25.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-||+|.|.|.+|+.++..+.... ++|+.++-
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G---~~V~l~d~ 34 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTG---YDVTIVDV 34 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcC---CeEEEEeC
Confidence 37999999999999999888764 67776653
No 270
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.44 E-value=10 Score=37.23 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=24.3
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
||+|.|.|.+|+.++..+.... .+|+.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G---~~V~~~d 31 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSG---FQTTLVD 31 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCC---CcEEEEe
Confidence 7999999999999999988764 5666664
No 271
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.94 E-value=38 Score=36.03 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||.|.|+|+.|+.++|.|..+. .+|.+ .|
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G---~~v~~-~D 37 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHG---ARLRV-AD 37 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCC---CEEEE-Ec
Confidence 37999999999999999998875 56654 44
No 272
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.89 E-value=45 Score=35.46 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=49.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec-c
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN-R 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~-~ 147 (416)
.||.|.|+|..|+.+++.+..+. .+|.+ .|. +......++. . .|. ++... .
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G---~~V~~-~D~-~~~~~~~~l~--~-------------------~gi--~~~~~~~ 67 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELG---CDVVV-ADD-NETARHKLIE--V-------------------TGV--ADISTAE 67 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CEEEE-ECC-ChHHHHHHHH--h-------------------cCc--EEEeCCC
Confidence 37999999999999999998775 45544 442 2222222221 0 011 12211 2
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
+++++ .+.|+||-+.|.-.+........+.|.
T Consensus 68 ~~~~~----~~~d~vV~Spgi~~~~p~~~~a~~~gi 99 (473)
T PRK00141 68 ASDQL----DSFSLVVTSPGWRPDSPLLVDAQSQGL 99 (473)
T ss_pred chhHh----cCCCEEEeCCCCCCCCHHHHHHHHCCC
Confidence 23333 267899999998777666666666676
No 273
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=61.89 E-value=14 Score=38.15 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=27.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G---~~V~~l~R 92 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRG---YNVVAVAR 92 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEEe
Confidence 46899999 8999999999999875 67777753
No 274
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.67 E-value=34 Score=35.45 Aligned_cols=85 Identities=26% Similarity=0.376 Sum_probs=49.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC---hhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG---VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~---~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
-+|.|.|.|++|+.+++.|.+.. .+|++ .|... .+....|-+ + | +++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G---~~V~~-~d~~~~~~~~~~~~l~~----~------------------g--~~~~~ 57 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLG---ANVTV-NDGKPFSENPEAQELLE----E------------------G--IKVIC 57 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CEEEE-EcCCCccchhHHHHHHh----c------------------C--CEEEe
Confidence 37899999999999999998875 56544 45311 111122210 0 1 11111
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
..++.++. ..+.|+||-+.|.-.+........+.|.
T Consensus 58 ~~~~~~~~--~~~~d~vV~s~gi~~~~~~~~~a~~~~i 93 (447)
T PRK02472 58 GSHPLELL--DEDFDLMVKNPGIPYTNPMVEKALEKGI 93 (447)
T ss_pred CCCCHHHh--cCcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 12232221 1147999999998877766666667776
No 275
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=61.50 E-value=12 Score=36.36 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.|.|.+|..+...|.+.. .+|..+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 48999999999999998887654 4555555
No 276
>PLN02778 3,5-epimerase/4-reductase
Probab=61.46 E-value=16 Score=36.07 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=26.2
Q ss_pred cccceeEEEEc-cChhHHHHHHHHHhCCCCCceEEE
Q 014890 65 AQAKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVA 99 (416)
Q Consensus 65 ~~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVa 99 (416)
..|++||-|-| .|-||+.+++.|.+++ .+|+.
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g---~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQG---IDFHY 38 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCC---CEEEE
Confidence 44667999999 8999999999998875 46653
No 277
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=61.46 E-value=55 Score=31.96 Aligned_cols=94 Identities=18% Similarity=0.121 Sum_probs=50.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|-|.+|..+++.+.... .+ ++++-. +.+...++.+|... . .++.+.-...+
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~g---~~~v~~~~~--s~~~~~~~~~~g~~--------------~-~~~~~~~~~~~-- 224 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKASG---ARKVIVSDL--NEFRLEFAKKLGAD--------------Y-TIDAAEEDLVE-- 224 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHHhCCc--------------E-EecCCccCHHH--
Confidence 48999999999999988776654 56 555532 34444444332210 0 01111000000
Q ss_pred CC-CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEE
Q 014890 148 NP-VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186 (416)
Q Consensus 148 ~p-~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV 186 (416)
.. ...+ ..++|+|++|+|.......+..+++.+.+-+
T Consensus 225 ~i~~~~~--~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 225 KVRELTD--GRGADVVIVATGSPEAQAQALELVRKGGRIL 262 (343)
T ss_pred HHHHHhC--CcCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 00 0011 2369999999996444455567777776433
No 278
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.14 E-value=53 Score=34.14 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=51.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC-hhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~-~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
.||.|.|+|+.|+..++.|..+. .+|.+ .|... +.....| . .|-.+.. ...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G---~~v~~-~D~~~~~~~~~~l-----------------~------~g~~~~~-~~~ 58 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARG---VTPRV-IDTRITPPGLDKL-----------------P------ENVERHT-GSL 58 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCC---CeEEE-EcCCCCchhHHHH-----------------h------cCCEEEe-CCC
Confidence 37999999999999999777664 56544 44211 1100111 0 0111111 112
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
++..+ .+.|+||-+.|.-.+.+......+.|++ |++
T Consensus 59 ~~~~~----~~~d~vv~spgi~~~~~~~~~a~~~g~~--v~~ 94 (438)
T PRK03806 59 NDEWL----LAADLIVASPGIALAHPSLSAAADAGIE--IVG 94 (438)
T ss_pred CHHHh----cCCCEEEECCCCCCCCHHHHHHHHCCCe--EEE
Confidence 22222 2468999999998887777788888984 554
No 279
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=61.00 E-value=12 Score=40.24 Aligned_cols=32 Identities=22% Similarity=0.265 Sum_probs=26.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||||.|.|.+|..++..+...+ ++|+..+-
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G---~~V~v~D~ 35 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAG---IDVAVFDP 35 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 358999999999999999888764 67766653
No 280
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=60.71 E-value=19 Score=36.08 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|.|.|.||..+++.+.... . .|+++.
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G---~~~vi~~~ 219 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRG---ASRIIGVD 219 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999988877664 5 566664
No 281
>PRK06444 prephenate dehydrogenase; Provisional
Probab=60.61 E-value=10 Score=36.14 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCC
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~ 91 (416)
|||+|.| .|+.||.+.+.+.+.+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g 24 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNG 24 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCC
Confidence 4899999 7999999998876543
No 282
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=60.54 E-value=55 Score=32.22 Aligned_cols=87 Identities=20% Similarity=0.242 Sum_probs=48.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|.|.|.+|+.+++.+.... ..++++-.. .+...++.+ +|. + . .++.+....
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G---~~v~~~~~~--~~~~~~~~~----~g~-~---------~-vi~~~~~~~----- 225 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALG---AEVTAFSRS--PSKKEDALK----LGA-D---------E-FIATKDPEA----- 225 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CeEEEEcCC--HHHHHHHHH----cCC-c---------E-EecCcchhh-----
Confidence 47889999999999887776653 566555432 222222221 220 0 0 011100000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
...+ ..++|+|+||+|.-...+.+-.+++.+.
T Consensus 226 ~~~~---~~~~d~v~~~~g~~~~~~~~~~~l~~~G 257 (337)
T cd05283 226 MKKA---AGSLDLIIDTVSASHDLDPYLSLLKPGG 257 (337)
T ss_pred hhhc---cCCceEEEECCCCcchHHHHHHHhcCCC
Confidence 0011 2479999999998655566677777665
No 283
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=60.50 E-value=16 Score=33.26 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=26.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
+.||.|.|.|++|+..++++...+ .+++.+.+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lG---a~v~~~d~~ 52 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLG---AEVVVPDER 52 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT----EEEEEESS
T ss_pred CeEEEEECCCHHHHHHHHHHhHCC---CEEEeccCC
Confidence 579999999999999999998876 788777653
No 284
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.14 E-value=12 Score=36.59 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.||+|.|.|.+|..++..+.... .+|+.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g---~~V~~~d 33 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAG---YDVVMVD 33 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCC---CceEEEe
Confidence 37999999999999999988764 5777665
No 285
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.10 E-value=42 Score=34.79 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=51.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
.+|.|.|-|++|+.+++.|.++. .+|.++ |....+.+...++ + .+ ..+ +++.....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G---~~V~~~-d~~~~~~~~~~~~-~---------l~-~~~---------~~~~~~~~ 61 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG---AKVILT-DEKEEDQLKEALE-E---------LG-ELG---------IELVLGEY 61 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEE-eCCchHHHHHHHH-H---------HH-hcC---------CEEEeCCc
Confidence 58999999999999999999876 565544 4322122211111 0 00 001 11211111
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
+.++ ..+.|+||-++|...+.+......+.|.
T Consensus 62 ~~~~---~~~~d~vv~~~g~~~~~~~~~~a~~~~i 93 (450)
T PRK14106 62 PEEF---LEGVDLVVVSPGVPLDSPPVVQAHKKGI 93 (450)
T ss_pred chhH---hhcCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2111 1368999999999888776666666665
No 286
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=60.03 E-value=50 Score=31.17 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=48.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.+|+.+++.+.... .. |+++-. +.+....+-+ +|..+..+. ..
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~g---~~~vi~~~~--~~~~~~~~~~----~g~~~~~~~----------~~-------- 151 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAAG---AREVVGVDP--DAARRELAEA----LGPADPVAA----------DT-------- 151 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEECC--CHHHHHHHHH----cCCCccccc----------cc--------
Confidence 47899999999999988877664 45 666642 2333332222 221110000 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
+.. +...++|++|+|+|.....+.+..+++.+.
T Consensus 152 -~~~--~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g 184 (277)
T cd08255 152 -ADE--IGGRGADVVIEASGSPSALETALRLLRDRG 184 (277)
T ss_pred -hhh--hcCCCCCEEEEccCChHHHHHHHHHhcCCc
Confidence 000 123479999999886544455566666665
No 287
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=59.86 E-value=13 Score=37.24 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=30.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCC-CCCceEEEEecCCChhHHhhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK-DSPLEVVAINDTGGVKQASHLL 113 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~-~~~~~vVaINd~~~~~~~a~Ll 113 (416)
+|||+.|+|.+|+.+++-|++.. -+.-+|...|. ..+...+|.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~--~~e~~~~l~ 45 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR--SEEKRAALA 45 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC--CHHHHHHHH
Confidence 58999999999999999999875 22346655664 344443333
No 288
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=59.76 E-value=12 Score=34.96 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=26.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++|.|.| +|.||+.+++.|.++. -+|++++.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~---~~v~~~~r 32 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARG---HEVRAAVR 32 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCC---CEEEEEEe
Confidence 4789999 9999999999999985 68888875
No 289
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=59.43 E-value=37 Score=38.62 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=48.0
Q ss_pred eEEEEccChhHHHH-HHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGfGrIGR~v-lr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+|.|.|.|..|+.. +|.|.++. .+| .+.|....+.+..|-+. | |.+....+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G---~~V-~~sD~~~~~~~~~L~~~----------------------g--i~~~~g~~ 57 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRG---YSV-SGSDLSEGKTVEKLKAK----------------------G--ARFFLGHQ 57 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCC---CeE-EEECCCCChHHHHHHHC----------------------C--CEEeCCCC
Confidence 69999999999998 88888775 564 45664332233333211 1 11111122
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
++.++ +.|+||-+.|.-.+.+......+.|.
T Consensus 58 ~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 88 (809)
T PRK14573 58 EEHVP----EDAVVVYSSSISKDNVEYLSAKSRGN 88 (809)
T ss_pred HHHcC----CCCEEEECCCcCCCCHHHHHHHHCCC
Confidence 32232 57899999988776554444444554
No 290
>PLN02427 UDP-apiose/xylose synthase
Probab=59.28 E-value=15 Score=37.21 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=27.9
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++||.|-| .|-||+.+++.|.+++ ..+|+++..
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r 47 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDV 47 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEec
Confidence 346899999 8999999999999863 258888864
No 291
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.25 E-value=14 Score=36.63 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=25.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.||+|.|.|.+|..++..+.... .+|+.++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g---~~V~~~d 34 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKG---LQVVLID 34 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCC---CeEEEEE
Confidence 48999999999999999887654 6777665
No 292
>PRK08655 prephenate dehydrogenase; Provisional
Probab=59.20 E-value=13 Score=39.42 Aligned_cols=30 Identities=30% Similarity=0.582 Sum_probs=24.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.| +|.||+.+.+.+.+.. .+|.+++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~ 31 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTG 31 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEE
Confidence 4899998 9999999999998764 5666665
No 293
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=58.92 E-value=52 Score=32.54 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=23.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaIN 101 (416)
-+|.|+|-|.+|..+++.+.... .+ |+++.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G---~~~v~~~~ 192 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALG---AKSVTAID 192 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEC
Confidence 48999999999999988877664 55 44553
No 294
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=58.84 E-value=44 Score=32.30 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=50.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+| .|.+|..+++.+.... .+|+++.. +.+...++.+ +|. + .+ ++.+.-.+. +
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~G---~~vi~~~~--s~~~~~~l~~----~Ga-~---------~v-i~~~~~~~~--~ 202 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIKG---CKVIGCAG--SDDKVAWLKE----LGF-D---------AV-FNYKTVSLE--E 202 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHH----cCC-C---------EE-EeCCCccHH--H
Confidence 3789999 7999999988887764 67766653 2333434432 221 0 00 110000000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
... .+...++|+|+||+|. ...+.+..+++.|.+
T Consensus 203 ~v~--~~~~~gvd~vld~~g~-~~~~~~~~~l~~~G~ 236 (329)
T cd08294 203 ALK--EAAPDGIDCYFDNVGG-EFSSTVLSHMNDFGR 236 (329)
T ss_pred HHH--HHCCCCcEEEEECCCH-HHHHHHHHhhccCCE
Confidence 000 1112479999999997 444555677766664
No 295
>PRK06988 putative formyltransferase; Provisional
Probab=58.80 E-value=13 Score=37.73 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=26.2
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
|+|||.+.|++.+|...|+.|+++. ++|++|
T Consensus 1 ~~mkIvf~Gs~~~a~~~L~~L~~~~---~~i~~V 31 (312)
T PRK06988 1 MKPRAVVFAYHNVGVRCLQVLLARG---VDVALV 31 (312)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHhCC---CCEEEE
Confidence 4579999999999999999999864 676665
No 296
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.66 E-value=56 Score=34.13 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=49.0
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC-hhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe-cc
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS-NR 147 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~-~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~-~~ 147 (416)
-|+|.|.|.+|+.++|.|.++. .+| .+.|... ......|.+ .. -| +++.. ..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G---~~v-~~~D~~~~~~~~~~l~~---------------~~-----~g--~~~~~~~~ 61 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQG---IPF-AVMDSREQPPGLDTLAR---------------EF-----PD--VELRCGGF 61 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCC---CeE-EEEeCCCCchhHHHHHh---------------hc-----CC--cEEEeCCC
Confidence 4899999999999999998875 554 4565321 111111110 00 01 12211 23
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
+++.+. +.|+||-+.|.-.+.+......+.|.
T Consensus 62 ~~~~~~----~~d~vV~sp~i~~~~p~~~~a~~~~i 93 (448)
T PRK03803 62 DCELLV----QASEIIISPGLALDTPALRAAAAMGI 93 (448)
T ss_pred ChHHhc----CCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 344442 56899999998777665555556665
No 297
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=58.49 E-value=6.7 Score=40.37 Aligned_cols=110 Identities=20% Similarity=0.172 Sum_probs=54.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCce-----eeecCCeEEECCEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADV-----KPVGTDGISVDGKV 140 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v-----~~~~~~~i~v~G~~ 140 (416)
..||.|.|.|-+|-.++..|....-+.+. .|.+ ..++..+..-+-|+ ..-|+.+.+. + .-+..+.+.-..
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~--lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~-~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHIT--IIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAML-ALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEE--EEeCCEEcccccccCcccChhHCCChHHHHHHHHHH-HHCCCcEEEEEE
Confidence 46999999999999999998765422233 2432 22333333322221 1224332211 0 012222222111
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHH-HHHcCCC
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGAK 184 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~-hl~aGAk 184 (416)
-.+ ++++..=-..+.|+||+|+..+.++..... ..+.|.+
T Consensus 105 ~~i----~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 105 RRL----TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred eec----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 111 111110012478999999999987764433 3344543
No 298
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.35 E-value=46 Score=33.03 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|+|.|.+|+.+++.+.... . .|+++.
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~G---~~~v~~~~ 209 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLAG---ARRVIVID 209 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999988877764 5 666664
No 299
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=58.13 E-value=90 Score=30.45 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=71.5
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNP 149 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p 149 (416)
.|.|+|.|.+|+.+++.+.... ..|+++....+.+....+.+ +|. + . . +.+.-.. .+..
T Consensus 167 ~vlI~g~g~~g~~~~~la~~~G---~~v~~~~~~~~~~~~~~~~~----~g~-~---~-~-------~~~~~~~--~~~l 225 (306)
T cd08258 167 TVVVFGPGPIGLLAAQVAKLQG---ATVVVVGTEKDEVRLDVAKE----LGA-D---A-V-------NGGEEDL--AELV 225 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHcC---CEEEEECCCCCHHHHHHHHH----hCC-c---c-c-------CCCcCCH--HHHH
Confidence 6888999999999998887765 67766532212333322222 221 0 0 0 0000000 0000
Q ss_pred CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCcc-CCCCCCCeEecCCcchhhhHHH
Q 014890 150 VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKPDEPIISNASCTTNCLAPF 228 (416)
Q Consensus 150 ~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~-~y~~~~~IISnaSCTTn~Lap~ 228 (416)
..+ ....++|++|||.|.-.....+..+++.+.+-|.+...+ + .+ + .+|.. .+.+...|..+-.++...+.-+
T Consensus 226 ~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~-~--~~~~~~~~~~~~~i~g~~~~~~~~~~~~ 299 (306)
T cd08258 226 NEI-TDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFG-P-LA-A--SIDVERIIQKELSVIGSRSSTPASWETA 299 (306)
T ss_pred HHH-cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccC-C-CC-c--ccCHHHHhhcCcEEEEEecCchHhHHHH
Confidence 000 122478999999975434445567787766544454433 1 11 1 11211 2223446666667777777777
Q ss_pred HHHHHH
Q 014890 229 VKVLDQ 234 (416)
Q Consensus 229 lkvL~~ 234 (416)
++.+++
T Consensus 300 ~~~~~~ 305 (306)
T cd08258 300 LRLLAS 305 (306)
T ss_pred HHHHhc
Confidence 777654
No 300
>PRK06153 hypothetical protein; Provisional
Probab=58.07 E-value=6.2 Score=41.65 Aligned_cols=106 Identities=14% Similarity=-0.043 Sum_probs=53.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhh-cc-ccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLL-KY-DSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Ll-ky-DS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
..||+|.|.|-+|-.++..|...+- -+|+.|-. ..+...+-..+ .| ....|+-...+++..+..-.++- .|...
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I~~~ 252 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPV--REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GIVPH 252 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCC--CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eEEEE
Confidence 4699999999999999998876542 25555543 22333332322 11 11233311111101110001221 12222
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHH
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~ 177 (416)
.+. ++++++. ..+.|+||+|+..+-+|...-.
T Consensus 253 ~~~I~~~n~~~-L~~~DiV~dcvDn~~aR~~ln~ 285 (393)
T PRK06153 253 PEYIDEDNVDE-LDGFTFVFVCVDKGSSRKLIVD 285 (393)
T ss_pred eecCCHHHHHH-hcCCCEEEEcCCCHHHHHHHHH
Confidence 111 3333331 2489999999998877655443
No 301
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=58.06 E-value=9.4 Score=37.17 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
+||+|.|+|.+|..+++.|.+.+
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~ 26 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSN 26 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCC
Confidence 58999999999999999998753
No 302
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=57.98 E-value=38 Score=38.13 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=73.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhh-------hhccccccccCCCceeeecCCeEEECCEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH-------LLKYDSTLGIFEADVKPVGTDGISVDGKVI 141 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~-------LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I 141 (416)
-||+|.|.|.+|+.++..+..+.. ++|+.+.- +.+.+.. +|...-..|++..... ...+ ..|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G--~~V~l~d~--~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~----~~i 378 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAG--LPVRIKDI--NPQGINHALKYSWDLLDKKVKRRHLKPSER---DKQM----ALI 378 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcC--CeEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHH----hcE
Confidence 479999999999999987762322 77665542 2232222 2211111222221100 0000 123
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHh-----hHHHHHHcCCCEEEEcCCCC-C--------CCCeEEeec---C
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDRE-----GAGKHIQAGAKKVLITAPGK-G--------DIPTYVVGV---N 204 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~-----~a~~hl~aGAkkVIIsapsk-d--------~~ptvV~gV---N 204 (416)
++. .+.+.+ .++|+||||...-...+ ...+|+..++ +|-|+.|. + ..|-=+.|. |
T Consensus 379 ~~~--~~~~~~----~~aDlViEav~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~ig~Hff~ 450 (708)
T PRK11154 379 SGT--TDYRGF----KHADVVIEAVFEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIAAAAARPEQVIGLHYFS 450 (708)
T ss_pred EEe--CChHHh----ccCCEEeecccccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHHhcCcccceEEEecCC
Confidence 333 222223 48999999976655443 2334444555 77777662 0 234334443 3
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHHH
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVLD 233 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~ 233 (416)
+-.+-+--.||..+.+.-..+.-+...+.
T Consensus 451 P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 451 PVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 22222223477776666665555555553
No 303
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=57.84 E-value=55 Score=30.07 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=23.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|+|.|.+|+.+++.+.... .+|+++.
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g---~~v~~~~ 165 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAG---ARVIVTD 165 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEc
Confidence 47999998779999998877664 5666664
No 304
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=57.61 E-value=43 Score=33.82 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|+|.|.||...+..+.... . +|+++.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G---~~~Vi~~~ 217 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAK---ASRIIAID 217 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEc
Confidence 47999999999999988776654 4 566663
No 305
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=57.58 E-value=12 Score=40.20 Aligned_cols=153 Identities=18% Similarity=0.358 Sum_probs=78.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhcccccccc----CCCcee-eec----CCeEEE---
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGI----FEADVK-PVG----TDGISV--- 136 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~----f~~~v~-~~~----~~~i~v--- 136 (416)
.+|||.|+|.+|..+++.|.++. ++|.+.|- +.+....+.+..-..|. +. +++ .+. -+.+.+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G---~~V~v~dr--~~~~~~~l~~~~~~~g~~i~~~~-s~~e~v~~l~~~d~Iil~v~ 75 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRG---FKISVYNR--TYEKTEEFVKKAKEGNTRVKGYH-TLEELVNSLKKPRKVILLIK 75 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCC---CeEEEEeC--CHHHHHHHHHhhhhcCCcceecC-CHHHHHhcCCCCCEEEEEeC
Confidence 48999999999999999998875 68777774 33333333321000010 11 110 000 111111
Q ss_pred CCEEE-EEEeccCCCCCCCCCccccEEEcCCCCC-CC-HhhHHHHHHcCCCEEEEcCCCCC------CCCeEEeecCccC
Q 014890 137 DGKVI-QVVSNRNPVNLPWGDLGIDLVIEGTGVF-VD-REGAGKHIQAGAKKVLITAPGKG------DIPTYVVGVNADA 207 (416)
Q Consensus 137 ~G~~I-~v~~~~~p~~i~W~~~gvDiVie~TG~f-~s-~~~a~~hl~aGAkkVIIsapskd------~~ptvV~gVN~~~ 207 (416)
+++.+ .+... -+|--+.| |++||++-.+ .+ .+.+....+.|+ -.+++|-.+ .-|++.+|=+.+.
T Consensus 76 ~~~~v~~vi~~----l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi--~fldapVSGG~~gA~~G~~lm~GG~~~a 148 (470)
T PTZ00142 76 AGEAVDETIDN----LLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGI--LYLGMGVSGGEEGARYGPSLMPGGNKEA 148 (470)
T ss_pred ChHHHHHHHHH----HHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCC--eEEcCCCCCCHHHHhcCCEEEEeCCHHH
Confidence 11100 00000 01111223 8999987554 33 344455666788 578887422 2468999999887
Q ss_pred CCCCCCeE---ecC----Ccc----hhhhHHHHHHHHH
Q 014890 208 YKPDEPII---SNA----SCT----TNCLAPFVKVLDQ 234 (416)
Q Consensus 208 y~~~~~II---Sna----SCT----Tn~Lap~lkvL~~ 234 (416)
|+.-.++. +.. .|. ...-+..+|.+|+
T Consensus 149 ~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN 186 (470)
T PTZ00142 149 YDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHN 186 (470)
T ss_pred HHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhH
Confidence 76422222 211 122 2345667777775
No 306
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=57.55 E-value=14 Score=38.18 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=26.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+.+|-|.|+|++|+.+++.|.+++ .+++.|..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~---~~v~vid~ 262 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEG---YSVKLIER 262 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC---CeEEEEEC
Confidence 468999999999999999988764 67777753
No 307
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=57.37 E-value=18 Score=37.03 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.6
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~ 91 (416)
++||+|.|. |.||..++-.+..++
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCC
Confidence 689999997 999999988877653
No 308
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=57.07 E-value=34 Score=34.13 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=21.0
Q ss_pred eeEEEEccChhHHHHHHHHHh-CCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHG-RKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~-~~~~~~~vVaIN 101 (416)
-+|.|.|.|.||...+..+.. ... -.|+++.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~--~~vi~~~ 196 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPE--SKLVVFG 196 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCC--CcEEEEe
Confidence 379999999999887776543 221 3555553
No 309
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=57.03 E-value=23 Score=33.78 Aligned_cols=92 Identities=27% Similarity=0.296 Sum_probs=49.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.+|..+++.+.... .+ ++++... .+....+-+ +|- + . .++...-... +
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~g---~~~v~~~~~~--~~~~~~~~~----~g~---~-~-------~~~~~~~~~~--~ 188 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAAG---ARRVIAIDRR--PARLALARE----LGA---T-E-------VVTDDSEAIV--E 188 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECCC--HHHHHHHHH----hCC---c-e-------EecCCCcCHH--H
Confidence 47999999999999998887764 66 6666542 333322211 121 0 0 0111000000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
...++ ....++|++++|.|.-...+.+..+++.+.
T Consensus 189 ~l~~~-~~~~~vd~vld~~g~~~~~~~~~~~l~~~g 223 (312)
T cd08269 189 RVREL-TGGAGADVVIEAVGHQWPLDLAGELVAERG 223 (312)
T ss_pred HHHHH-cCCCCCCEEEECCCCHHHHHHHHHHhccCC
Confidence 00000 112479999999986545556667777665
No 310
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=56.82 E-value=17 Score=39.99 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=31.7
Q ss_pred ccceeEEEEc-cChhHHHHHHHHHhCCCCCceE-EEEecCCChhHHhhh
Q 014890 66 QAKLKVAING-FGRIGRNFLRCWHGRKDSPLEV-VAINDTGGVKQASHL 112 (416)
Q Consensus 66 ~m~ikVaING-fGrIGR~vlr~l~~~~~~~~~v-VaINd~~~~~~~a~L 112 (416)
++.|||-|-| .|.||+.+.+.|.+++ .++ ++..|+.+.+.+..+
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g---~~v~~~~~~l~d~~~v~~~ 423 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQG---IAYEYGKGRLEDRSSLLAD 423 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCC---CeEEeeccccccHHHHHHH
Confidence 4457999999 8999999999998764 566 455555555544333
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=56.56 E-value=82 Score=30.40 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=52.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
-+|.|+|.|.+|+.+++.+.... ..|+++-. +.+...++-+ +|. + .+ ++.+.-. ..+.
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G---~~V~~~~~--s~~~~~~~~~----~g~-~---------~~-~~~~~~~-~~~~- 224 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMG---AAVIAVDI--KEEKLELAKE----LGA-D---------EV-LNSLDDS-PKDK- 224 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CEEEEEcC--CHHHHHHHHH----hCC-C---------EE-EcCCCcC-HHHH-
Confidence 37889999999999988877764 67766643 2333333322 121 0 00 1100000 0000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
....+ ..++|+|+||.|.-...+.+..+++.|.+-|.+
T Consensus 225 ~~~~~--~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 225 KAAGL--GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHHhc--CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00011 237999999998654556677888887743333
No 312
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=56.49 E-value=51 Score=33.10 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=23.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|.|.|.||..+++.+.... . .|+++.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G---~~~Vi~~~ 216 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAG---ASRIIGVD 216 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 48999999999999888777664 5 466664
No 313
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=56.42 E-value=69 Score=33.42 Aligned_cols=87 Identities=20% Similarity=0.257 Sum_probs=50.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
.+|.|.|.|.+|+.++|.|.++. .+|++......++....|-++ ..| |++.....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g---~~v~~~d~~~~~~~~~~l~~~--------------------~~g--i~~~~g~~ 60 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNG---AEVAAYDAELKPERVAQIGKM--------------------FDG--LVFYTGRL 60 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeCCCCchhHHHHhhc--------------------cCC--cEEEeCCC
Confidence 48999999999999999998875 566544322111111111100 012 12222121
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
+..+ + .+.|+||-+.|.--+.+......+.|.
T Consensus 61 ~~~~-~--~~~d~vv~spgi~~~~p~~~~a~~~~i 92 (445)
T PRK04308 61 KDAL-D--NGFDILALSPGISERQPDIEAFKQNGG 92 (445)
T ss_pred CHHH-H--hCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 2111 1 267999999999877766666666666
No 314
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=56.16 E-value=12 Score=42.51 Aligned_cols=144 Identities=14% Similarity=0.103 Sum_probs=71.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhh-------hhccccccccCCCceeeecCCeEEECCEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASH-------LLKYDSTLGIFEADVKPVGTDGISVDGKVI 141 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~-------LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I 141 (416)
-||+|.|.|.+|..++-.+.... ++|+.+. . +.+.+.. +|...-..|+....-. +..+ ..|
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G---~~V~l~d-~-~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~---~~~~----~~i 403 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKG---LKTVLKD-A-TPAGLDRGQQQVFKGLNKKVKRKKITSLER---DSIL----SNL 403 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCC---CcEEEec-C-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHH----hCe
Confidence 37999999999999988777654 7776554 2 3333332 2211111232221100 0000 123
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHh-----hHHHHHHcCCCEEEEcCCCC-C--------CCCeEEeecC---
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDRE-----GAGKHIQAGAKKVLITAPGK-G--------DIPTYVVGVN--- 204 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~-----~a~~hl~aGAkkVIIsapsk-d--------~~ptvV~gVN--- 204 (416)
+.. .+.+.+ .++|+||||.-.-...+ ....++..++ +|-|+.|. + ..|-=+.|..
T Consensus 404 ~~~--~~~~~~----~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la~~~~~p~r~ig~Hff~ 475 (737)
T TIGR02441 404 TPT--LDYSGF----KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIAAVSSRPEKVIGMHYFS 475 (737)
T ss_pred EEe--CCHHHh----ccCCeehhhccccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHHhhcCCccceEEEeccC
Confidence 322 223323 48999999976655433 2234444455 77777762 0 2344444442
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHH
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVL 232 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL 232 (416)
+-..-+--.||..+..+--.++-+...+
T Consensus 476 P~~~m~LvEvv~g~~Ts~~~~~~~~~~~ 503 (737)
T TIGR02441 476 PVDKMQLLEIITHDGTSKDTLASAVAVG 503 (737)
T ss_pred CcccCceEEEeCCCCCCHHHHHHHHHHH
Confidence 2211111246666555555555555544
No 315
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=56.01 E-value=15 Score=36.71 Aligned_cols=24 Identities=17% Similarity=0.165 Sum_probs=19.8
Q ss_pred cceeEEEEccChhHHHHHHHHHhC
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGR 90 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~ 90 (416)
|.|||+|.|.|.||..+.-.|.+.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~ 24 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARA 24 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhC
Confidence 457999999999999887776654
No 316
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.91 E-value=70 Score=33.98 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=49.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChh---HHhhhhccccccccCCCceeeecCCeEEECCEEEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVK---QASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~---~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~ 145 (416)
-||+|.|+|+-|+..+|.|..+. .++ .+.|..+.+ ....|- .. + +.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g---~~v-~~~d~~~~~~~~~~~~l~-----------------~~-----~--~~~~~ 60 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHL---PAQ-ALTLFCNAVEAREVGALA-----------------DA-----A--LLVET 60 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcC---CEE-EEEcCCCcccchHHHHHh-----------------hc-----C--EEEeC
Confidence 48999999999999999998875 454 346532211 111110 01 1 11112
Q ss_pred ccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 146 NRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 146 ~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
..+++.+ .++|+||-+.|.-.+.+......+.|.
T Consensus 61 ~~~~~~~----~~~d~vV~SpgI~~~~p~~~~a~~~~i 94 (468)
T PRK04690 61 EASAQRL----AAFDVVVKSPGISPYRPEALAAAARGT 94 (468)
T ss_pred CCChHHc----cCCCEEEECCCCCCCCHHHHHHHHcCC
Confidence 2233333 267999999999877766666666665
No 317
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=55.87 E-value=76 Score=31.03 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=22.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
=+|.|+|.|.+|..+++.+.... .+++.+-+
T Consensus 163 ~~VlI~g~g~vg~~~~~la~~~G---~~~v~~~~ 193 (341)
T cd08262 163 EVALVIGCGPIGLAVIAALKARG---VGPIVASD 193 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEEC
Confidence 47899999999999888777654 55444433
No 318
>PRK10083 putative oxidoreductase; Provisional
Probab=55.82 E-value=40 Score=32.94 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.7
Q ss_pred eeEEEEccChhHHHHHHHHHh
Q 014890 69 LKVAINGFGRIGRNFLRCWHG 89 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~ 89 (416)
-+|.|+|-|.+|..+++.+..
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~ 182 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKG 182 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 379999999999998887664
No 319
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=55.31 E-value=37 Score=34.19 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=70.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+||+|.|.|.+|..++-++..++. .+|+.+.-..+... +..+ |-.+.. .. .. ..+ .|+. ..|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~--~~VvlvDi~~~l~~-g~a~--d~~~~~---~~---~~----~~~-~i~~--t~d 63 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKEL--ADLVLLDVVEGIPQ-GKAL--DMYEAS---PV---GG----FDT-KVTG--TNN 63 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCC--CeEEEEeCCCChhH-HHHH--hhhhhh---hc---cC----CCc-EEEe--cCC
Confidence 589999999999999998887642 26555543322222 1111 221111 00 00 011 2222 223
Q ss_pred CCCCCCCCccccEEEcCCCCCCCH------------hhHHH----HHHc--CCCEEEEcCCCCCCCCeEEeecCccCCCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDR------------EGAGK----HIQA--GAKKVLITAPGKGDIPTYVVGVNADAYKP 210 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~------------~~a~~----hl~a--GAkkVIIsapskd~~ptvV~gVN~~~y~~ 210 (416)
.+++ .+.|+||-|.|.-... +.... -.+. .++=+++|+|. |+-+.+. .+...+ +
T Consensus 64 ~~~~----~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~--di~t~~~-~~~sg~-~ 135 (305)
T TIGR01763 64 YADT----ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL--DAMTYVA-WQKSGF-P 135 (305)
T ss_pred HHHh----CCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH--HHHHHHH-HHHHCc-C
Confidence 3333 3789999999953321 11111 1122 23234457775 2222111 011112 2
Q ss_pred CCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 211 DEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 211 ~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
.+++| +.||..--+.+-+.|.+.+
T Consensus 136 ~~rvi--G~g~~lds~R~~~~la~~l 159 (305)
T TIGR01763 136 KERVI--GQAGVLDSARFRTFIAMEL 159 (305)
T ss_pred HHHEE--EeccchHHHHHHHHHHHHh
Confidence 35677 3577777778888888888
No 320
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=54.93 E-value=6.9 Score=40.66 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=57.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCcee---e-ecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVK---P-VGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~---~-~~~~~i~v~G~~I 141 (416)
..||.|.|.|-+|..++..|....-+ ++..+.+ ..++..+..-+-|+ +.-|+.+.+.- + .-+..+.+....-
T Consensus 41 ~~~VliiG~GglG~~v~~~La~~Gvg--~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVG--TITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 46899999999999999998765422 4433443 23444444332222 22344332110 0 0012222222222
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHH-HHHcCCC
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGAK 184 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~-hl~aGAk 184 (416)
.+ +++++..-..++|+||+|+..+.++..... ..+.|..
T Consensus 119 ~i----~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 119 RL----TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred ec----CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 22 122221112478999999999988765443 3345554
No 321
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=54.92 E-value=23 Score=33.61 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+||.|.| .|.||+.+++.|+++. .+|+++.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g---~~V~~~~ 48 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKG---FAVKAGV 48 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCC---CEEEEEe
Confidence 5899999 8999999999998864 6777664
No 322
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=54.87 E-value=18 Score=40.74 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=23.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-||+|.|.|.+|+.++..+.... ++|+.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d 343 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKG---VPVIMKD 343 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCC---CeEEEEe
Confidence 37999999999999988776653 6766554
No 323
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=54.86 E-value=18 Score=35.94 Aligned_cols=32 Identities=28% Similarity=0.274 Sum_probs=26.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||.|-| .|.||+.+++.|.++. ..+|++++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeC
Confidence 5899999 7999999999998753 268888864
No 324
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=54.73 E-value=57 Score=31.69 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|.|-|-+|+.+++.+.... .+|+++..
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G---~~v~~~~~ 194 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMG---FETVAITR 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999889999988887764 67766654
No 325
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.71 E-value=18 Score=35.55 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.||+|.|.|.+|..++..+.... ++|+..+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G---~~V~l~d 34 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAG---YDVLLND 34 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 57999999999999999888764 6776665
No 326
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=54.07 E-value=41 Score=34.04 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=56.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
+-||-|.| +|.+|+.+++.+.+.+ .. ++..||--.. |+. +.|. +.+
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g-~~-~v~pVnp~~~---------~~~------------------v~G~--~~y-- 54 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYG-TN-IVGGVTPGKG---------GTT------------------VLGL--PVF-- 54 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCC-CC-EEEEECCCCC---------CCe------------------EeCe--ecc--
Confidence 35899999 8999999999998754 22 5546773100 111 2232 221
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
++..++|=.. ++|+++-+++...-.+-.+.-.++|+|.+||
T Consensus 55 ~sv~dlp~~~-~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI 95 (291)
T PRK05678 55 NTVAEAVEAT-GANASVIYVPPPFAADAILEAIDAGIDLIVC 95 (291)
T ss_pred CCHHHHhhcc-CCCEEEEEcCHHHHHHHHHHHHHCCCCEEEE
Confidence 3344555211 3899999999887777778888899998655
No 327
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=54.04 E-value=14 Score=41.60 Aligned_cols=145 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHh-------hhhccccccccCCCceeeecCCeEEECCEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQAS-------HLLKYDSTLGIFEADVKPVGTDGISVDGKVI 141 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a-------~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I 141 (416)
-||+|+|.|.+|..++.++.... ++|+.+.- +.+.+. .+|+..-..|+....- .+..+ ..|
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G---~~V~l~d~--~~~~l~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~----~~i 381 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG---TPIVMKDI--NQHSLDLGLTEAAKLLNKQVERGRITPAK---MAGVL----NGI 381 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC---CeEEEEeC--CHHHHHHHHHHHHHHHHHHHHcCCCChhh---HHHHH----hCe
Confidence 37999999999999998877654 77665542 222222 2221111123222110 00000 012
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHh-----hHHHHHHcCCCEEEEcCCCC-C--------CCCeEEeec---C
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDRE-----GAGKHIQAGAKKVLITAPGK-G--------DIPTYVVGV---N 204 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~-----~a~~hl~aGAkkVIIsapsk-d--------~~ptvV~gV---N 204 (416)
+.. .+.+.+ .++|+||||.-.-...+ ....++..++ +|-|+.|. + ..|-=+.|. |
T Consensus 382 ~~~--~~~~~~----~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~ 453 (714)
T TIGR02437 382 TPT--LSYAGF----DNVDIVVEAVVENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLAKALKRPENFCGMHFFN 453 (714)
T ss_pred EEe--CCHHHh----cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHHhhcCCcccEEEEecCC
Confidence 322 222223 48999999977665543 2233444445 77777662 0 134333333 2
Q ss_pred ccCCCCCCCeEecCCcchhhhHHHHHHHH
Q 014890 205 ADAYKPDEPIISNASCTTNCLAPFVKVLD 233 (416)
Q Consensus 205 ~~~y~~~~~IISnaSCTTn~Lap~lkvL~ 233 (416)
+-.+-+--.||...-..--.+.-++..+.
T Consensus 454 P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~ 482 (714)
T TIGR02437 454 PVHRMPLVEVIRGEKSSDETIATVVAYAS 482 (714)
T ss_pred CcccCceEeecCCCCCCHHHHHHHHHHHH
Confidence 22222222466665555555555555554
No 328
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=53.87 E-value=73 Score=31.16 Aligned_cols=92 Identities=25% Similarity=0.260 Sum_probs=49.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.+|+.+++.+.... .. ++++... .+...++.+ +|. . . .++.+.... +
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G---~~~v~~~~~~--~~~~~~l~~----~g~-~---~-------~~~~~~~~~---~ 217 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILG---AKRVIAVDID--DEKLAVARE----LGA-D---D-------TINPKEEDV---E 217 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEcCC--HHHHHHHHH----cCC-C---E-------EecCccccH---H
Confidence 37999999999999988777654 55 6666532 233333322 121 0 0 111110000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
...++. ...++|++++|+|.....+.+..+++.+.+
T Consensus 218 ~~~~~~-~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 253 (343)
T cd08236 218 KVRELT-EGRGADLVIEAAGSPATIEQALALARPGGK 253 (343)
T ss_pred HHHHHh-CCCCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 000010 123689999999865455566677776663
No 329
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=53.71 E-value=38 Score=33.15 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=29.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhh
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLL 113 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Ll 113 (416)
.+|.|-| .|-||+.+++.|.+++ .+|+++.+ ....+.+..++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~ 49 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRG---YTVKATVRDLTDRKKTEHLL 49 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEECCCcchHHHHHHH
Confidence 4799999 8999999999999875 57776543 33333333343
No 330
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=53.39 E-value=7.6 Score=36.63 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=26.0
Q ss_pred CCccccccccc-ccccCCCcccccccccccCCCCCcCCCCCcc
Q 014890 1 MASATLSVAKS-ALQGNGKGFSEFSGLRNSASLPFGRKSSDDF 42 (416)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (416)
||+.+++.+.+ +..+...-.+-|+|||+.+..|..|+...++
T Consensus 1 Mas~~~~s~~~~~~~~qas~vapf~gLKs~~~fp~~~k~~~~~ 43 (176)
T PLN02289 1 MASSMLSSAAVATSPAQATMVAPFTGLKSSAAFPVTRKANNDI 43 (176)
T ss_pred CcchhhhcccccccccccccccccccccccccCcceeeccccc
Confidence 67765544332 1111124678999999998888877754333
No 331
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=53.13 E-value=22 Score=37.38 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.1
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~ 91 (416)
++||+|.|. |+||-.++-.+..++
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 689999998 999999999887654
No 332
>PRK05442 malate dehydrogenase; Provisional
Probab=53.04 E-value=19 Score=36.74 Aligned_cols=144 Identities=16% Similarity=0.153 Sum_probs=70.3
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCC----CCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRK----DSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ 142 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~----~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~ 142 (416)
+.||+|.|. |.||..++-.+..++ +..++++-+. ..+-+..+.=...|-.|..+. +.+ .+.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiD-i~~~~~~~~g~a~Dl~~~~~~------------~~~-~~~ 69 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLE-IPPALKALEGVVMELDDCAFP------------LLA-GVV 69 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEe-cCCcccccceeehhhhhhhhh------------hcC-CcE
Confidence 469999997 999999988776532 1123554442 101000001111133232211 111 112
Q ss_pred EEeccCCCCCCCCCccccEEEcCCCCCC----CHh------------hHHHHHHcC---CCEEEEcCCCCCCCCeEEeec
Q 014890 143 VVSNRNPVNLPWGDLGIDLVIEGTGVFV----DRE------------GAGKHIQAG---AKKVLITAPGKGDIPTYVVGV 203 (416)
Q Consensus 143 v~~~~~p~~i~W~~~gvDiVie~TG~f~----s~~------------~a~~hl~aG---AkkVIIsapskd~~ptvV~gV 203 (416)
+. ..+.+++ .+.|+||-+.|.-. +|. .+++-.+.+ +.=+++|+|. |.-+++.-=
T Consensus 70 i~-~~~y~~~----~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv--Dv~t~v~~k 142 (326)
T PRK05442 70 IT-DDPNVAF----KDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA--NTNALIAMK 142 (326)
T ss_pred Ee-cChHHHh----CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch--HHHHHHHHH
Confidence 22 2334444 38899999998633 332 122222212 2223446665 333333321
Q ss_pred CccCCCCCCCeEecCCcchhhhHHHHHHHHHHh
Q 014890 204 NADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f 236 (416)
..-.| +.++||.. |+-=-+++-..|.+++
T Consensus 143 ~s~g~-p~~rViG~---t~LDs~R~r~~la~~l 171 (326)
T PRK05442 143 NAPDL-PAENFTAM---TRLDHNRALSQLAAKA 171 (326)
T ss_pred HcCCC-CHHHEEee---eHHHHHHHHHHHHHHh
Confidence 11122 23567754 5566788888899988
No 333
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=52.86 E-value=30 Score=37.15 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhC
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGR 90 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~ 90 (416)
++||+|.|. |.||-.++-.+..+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 799999998 99999999988765
No 334
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=52.77 E-value=14 Score=37.24 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=32.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYD 116 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyD 116 (416)
|+||.+|+||.|.++.+.+..+. .++|+-. . +++.+..|-+|.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD-~-n~~av~~~~~~g 43 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYD-V-NQTAVEELKDEG 43 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEc-C-CHHHHHHHHhcC
Confidence 47999999999999999999875 6887764 2 455555555443
No 335
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.73 E-value=19 Score=35.15 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=23.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.|.|.||..+...|.+.. .+|..+.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g---~~V~~~~ 30 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG---RDVTFLV 30 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC---CceEEEe
Confidence 48999999999999999888754 3554454
No 336
>PLN02827 Alcohol dehydrogenase-like
Probab=52.63 E-value=66 Score=32.79 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=22.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaI 100 (416)
-+|.|.|.|.||..+++.+.... .. ++++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~G---~~~vi~~ 224 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLRG---ASQIIGV 224 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEE
Confidence 47999999999999988777664 53 5554
No 337
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=52.55 E-value=88 Score=31.25 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=50.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.+|+.+++.+.... .. ++++... .+....+.++ |. + . .++.+.... . +
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G---~~~vi~~~~s--~~~~~~~~~~----g~---~-~-------v~~~~~~~~-~-~ 246 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFG---ASPIIAVDVR--DEKLAKAKEL----GA---T-H-------TVNAAKEDA-V-A 246 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEeCC--HHHHHHHHHh----CC---c-e-------EecCCcccH-H-H
Confidence 37899999999999998887664 55 6555432 2222222221 11 0 0 011100000 0 0
Q ss_pred CC-CCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NP-VNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p-~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
.. ...+ ..++|+||+|+|.....+.+..+++.+.+-|.+
T Consensus 247 ~l~~~~~--~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 247 AIREITG--GRGVDVVVEALGKPETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred HHHHHhC--CCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEE
Confidence 00 0011 246899999999752334566788877744334
No 338
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=52.46 E-value=10 Score=35.79 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||.|.|.|-+|-.+++.|....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~G 42 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAG 42 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcC
Confidence 358999999999999999987654
No 339
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.35 E-value=19 Score=37.97 Aligned_cols=32 Identities=28% Similarity=0.596 Sum_probs=27.9
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||.|-| .|-||+.+++.|.+++ .+|+++..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G---~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRG---DEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999 8999999999999875 68888854
No 340
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=52.25 E-value=24 Score=36.00 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.4
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++||.|-| .|-||+.+++.|.+++ .+|+++.-
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G---~~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEG---HYIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCC---CEEEEEEe
Confidence 57999999 8999999999998874 68887753
No 341
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.03 E-value=16 Score=37.97 Aligned_cols=101 Identities=23% Similarity=0.192 Sum_probs=52.4
Q ss_pred ccccccceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC--hhHHhhhhccccccccCCCceeeecCCeEEECCE
Q 014890 62 KVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG--VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 139 (416)
Q Consensus 62 ~~~~~m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~--~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~ 139 (416)
++...+.-||.|.|.|.||-..+.++-...-+ +|| |-|+.+ ++ +|.-| | .++- +....+
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~--~VV-i~d~~~~Rle-~Ak~~------G---a~~~------~~~~~~ 224 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGAS--DVV-ITDLVANRLE-LAKKF------G---ATVT------DPSSHK 224 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCC--cEE-EeecCHHHHH-HHHHh------C---CeEE------eecccc
Confidence 34455667999999999998777766655433 333 344422 22 22212 1 1111 000000
Q ss_pred E-EEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 140 V-IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 140 ~-I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
. +..+.+. -++. .++...|++|||||...+.+.|-..++.|-
T Consensus 225 ~~~~~~~~~-v~~~-~g~~~~d~~~dCsG~~~~~~aai~a~r~gG 267 (354)
T KOG0024|consen 225 SSPQELAEL-VEKA-LGKKQPDVTFDCSGAEVTIRAAIKATRSGG 267 (354)
T ss_pred ccHHHHHHH-HHhh-ccccCCCeEEEccCchHHHHHHHHHhccCC
Confidence 0 0000000 0011 122348999999999999888877776654
No 342
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=51.87 E-value=70 Score=32.16 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=23.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|+|-|.||...+..+.... . .|+++-
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G---~~~vi~~~ 218 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAG---ASRIIGID 218 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999988877664 4 465553
No 343
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=51.74 E-value=18 Score=37.78 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=28.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK 114 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk 114 (416)
|||+|.|.|.+|..++.++. .. .+|++++- +.+.+..+.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G---~~VigvD~--d~~kv~~l~~ 40 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QN---HEVVALDI--LPSRVAMLND 40 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hC---CcEEEEEC--CHHHHHHHHc
Confidence 48999999999999996554 33 78888874 3444544443
No 344
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=51.40 E-value=7.4 Score=43.62 Aligned_cols=119 Identities=20% Similarity=0.165 Sum_probs=61.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe-cCCChhHHhhhhcc--ccc--cccCCCce-----eeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN-DTGGVKQASHLLKY--DST--LGIFEADV-----KPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN-d~~~~~~~a~Llky--DS~--~G~f~~~v-----~~~~~~~i~v~ 137 (416)
..||.|.|.|-+|-.+++.|..-+-+ +|+.|- |..+...+.+-+-| +-. .|+.+... + --+-.+.+.
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg--~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk-~InP~v~i~ 414 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVR--HITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALK-RIFPSIQAT 414 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHH-HHCCCcEEE
Confidence 47999999999999999999875422 222232 22233233232222 221 15554321 1 012334444
Q ss_pred CEEEEE------Eec-------cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 138 GKVIQV------VSN-------RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 138 G~~I~v------~~~-------~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
|...+| +.+ ++.+++.=--.+.|+||+||-.+-+| +...-+-.-.+|.+|++
T Consensus 415 ~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR-~L~n~~c~~~~kplI~a 479 (664)
T TIGR01381 415 GHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR-WLPTVLCSRHKKIAISA 479 (664)
T ss_pred EeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH-HHHHHHHHHhCCCEEEE
Confidence 433332 111 11122211124679999999999887 44433333345567766
No 345
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=51.28 E-value=14 Score=36.51 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=23.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaIN 101 (416)
-+|.|+|.|.+|+..++.+.... . .|+++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G---~~~v~~~~ 204 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAG---ASKIIVSE 204 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEEC
Confidence 37999999999999998887764 5 565553
No 346
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.19 E-value=37 Score=35.79 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=49.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhH----HhhhhccccccccCCCceeeecCCeEEECCEEEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQ----ASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVV 144 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~----~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~ 144 (416)
.||+|.|+|+.|+.+++.|..+. .+|. +.|..+.+. ...|- -.|- .+.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G---~~V~-~~D~~~~~~~~~~~~~l~----------------------~~gi--~~~ 66 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLG---AKVT-AFDKKSEEELGEVSNELK----------------------ELGV--KLV 66 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCC---CEEE-EECCCCCccchHHHHHHH----------------------hCCC--EEE
Confidence 38999999999999999988875 4543 455321100 01110 0111 111
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
... .++.+ .+.|+||-+.|.-.+.+......+.|.
T Consensus 67 ~~~~~~~~~----~~~dlVV~Spgi~~~~p~~~~a~~~~i 102 (458)
T PRK01710 67 LGENYLDKL----DGFDVIFKTPSMRIDSPELVKAKEEGA 102 (458)
T ss_pred eCCCChHHh----ccCCEEEECCCCCCCchHHHHHHHcCC
Confidence 111 12333 256899999888777776666667776
No 347
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=51.18 E-value=58 Score=31.82 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=25.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.++.|.|.|.+||.+++.+.+.. .+|...|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g---~~v~v~~R 148 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKAD---CNVIIANR 148 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 47999999999999999998764 46666664
No 348
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=51.17 E-value=31 Score=36.16 Aligned_cols=97 Identities=24% Similarity=0.250 Sum_probs=52.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEE-EEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQ-VVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~-v~~~~ 147 (416)
-.|+|.|.|-||-..+..+..-.. =.|+||.- .++.+..-.++--|| .+|.++.. +.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA--~~IiAvD~--~~~Kl~~A~~fGAT~---------------~vn~~~~~~vv~-- 245 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGA--GRIIAVDI--NPEKLELAKKFGATH---------------FVNPKEVDDVVE-- 245 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCC--ceEEEEeC--CHHHHHHHHhcCCce---------------eecchhhhhHHH--
Confidence 479999999999888776654432 36777753 233333323322222 23333221 111
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
...++ | +.|+|++|||+|..-..+.+-.....|=+-|+|
T Consensus 246 ~i~~~-T-~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~i 284 (366)
T COG1062 246 AIVEL-T-DGGADYAFECVGNVEVMRQALEATHRGGTSVII 284 (366)
T ss_pred HHHHh-c-CCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEE
Confidence 01112 2 249999999999877665554433333333444
No 349
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=51.12 E-value=22 Score=34.86 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=26.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| .|-||+.+++.|.++. .+|+++..
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g---~~V~~~~~ 32 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNG---HDVVILDN 32 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCC---CeEEEEec
Confidence 4899999 8999999999998875 68887753
No 350
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=50.98 E-value=76 Score=31.86 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=23.5
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|+|- |.||...++.+..+. .+++++-
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~G---~~Vi~~~ 190 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLHG---CYVVGSA 190 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEc
Confidence 47999996 999999988777664 6776653
No 351
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.97 E-value=51 Score=33.10 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=18.4
Q ss_pred eeEEEEccCh-hHHHHHHHHHhCC
Q 014890 69 LKVAINGFGR-IGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGr-IGR~vlr~l~~~~ 91 (416)
.+|.|.|.|. +||-++..|.++.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~g 183 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNAN 183 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCC
Confidence 4899999876 9999888877654
No 352
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=50.78 E-value=16 Score=36.93 Aligned_cols=148 Identities=20% Similarity=0.313 Sum_probs=73.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCC------CCceEEEEecCCChhHHhhhhccccc---c-ccCCCceeeecCCeEEEC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKD------SPLEVVAINDTGGVKQASHLLKYDST---L-GIFEADVKPVGTDGISVD 137 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~------~~~~vVaINd~~~~~~~a~LlkyDS~---~-G~f~~~v~~~~~~~i~v~ 137 (416)
+++|+|.|.|-|||.+|..+..... -.+.||+|.|... ++.--|-. . .-|....-.+.+..+..+
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~-----~~~skD~~p~nl~sewk~~L~~st~~alsLd 77 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES-----LVASKDVLPENLNSEWKSELIKSTGSALSLD 77 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccc-----cccccccChhhhchHHHHHHHHhcCCcccHH
Confidence 5789999999999999998864321 1378899887411 01100100 0 000000000123333322
Q ss_pred CEEEEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCC------C
Q 014890 138 GKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP------D 211 (416)
Q Consensus 138 G~~I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~------~ 211 (416)
.-.-.+. ..| -.=+++|||...-..+...+.++.|. .|..|.|...- --| +.|+. .
T Consensus 78 aLia~L~--~sp--------~p~ilVDntaS~~ia~~y~Kfv~~gi---~IatpNKKafs----s~l-~~y~~l~~~~~s 139 (364)
T KOG0455|consen 78 ALIAKLL--GSP--------TPLILVDNTASMEIAEIYMKFVDLGI---CIATPNKKAFS----STL-EHYDKLALHSKS 139 (364)
T ss_pred HHHHHHc--CCC--------CceEEEecccHHHHHHHHHHHHhcCc---eEecCCccccc----ccH-HHHHHHHhcCCC
Confidence 1100111 112 12478899988777777778888877 45556542100 000 11111 1
Q ss_pred CCeEecCCcchhhhHHHHHHHHHHhhhh
Q 014890 212 EPIISNASCTTNCLAPFVKVLDQKFVTQ 239 (416)
Q Consensus 212 ~~IISnaSCTTn~Lap~lkvL~~~f~~~ 239 (416)
.+.|-- -.|.-+=.|++.-|++-..|+
T Consensus 140 ~~fi~H-EatVGAGLPiIs~L~eiI~tG 166 (364)
T KOG0455|consen 140 PRFIRH-EATVGAGLPIISSLNEIISTG 166 (364)
T ss_pred CceEEe-eccccCCchhHHHHHHHHhcC
Confidence 112211 124455679999999887443
No 353
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=50.32 E-value=17 Score=38.99 Aligned_cols=153 Identities=17% Similarity=0.296 Sum_probs=77.3
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhcc-cccccc-CCC--ceeeecCCeEEECCEEEEEEe
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKY-DSTLGI-FEA--DVKPVGTDGISVDGKVIQVVS 145 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llky-DS~~G~-f~~--~v~~~~~~~i~v~G~~I~v~~ 145 (416)
+|||.|+|++|+.+++.|.... ++|++.|.. .+....+.+. . .|. +.. +++.... . ...-.+-++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G---~~V~v~drt--~~~~~~l~~~~~--~g~~~~~~~s~~e~v~-~--l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHG---FTVSVYNRT--PEKTDEFLAEHA--KGKKIVGAYSIEEFVQ-S--LERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcC---CeEEEEeCC--HHHHHHHHhhcc--CCCCceecCCHHHHHh-h--cCCCCEEEEE
Confidence 4899999999999999998875 788777753 3333333321 0 011 000 0000000 0 0000111111
Q ss_pred ccCC-------CC-CCCCCccccEEEcCCC-CCCC-HhhHHHHHHcCCCEEEEcCCCCC------CCCeEEeecCccCCC
Q 014890 146 NRNP-------VN-LPWGDLGIDLVIEGTG-VFVD-REGAGKHIQAGAKKVLITAPGKG------DIPTYVVGVNADAYK 209 (416)
Q Consensus 146 ~~~p-------~~-i~W~~~gvDiVie~TG-~f~s-~~~a~~hl~aGAkkVIIsapskd------~~ptvV~gVN~~~y~ 209 (416)
..++ .. +|--..| |++||++- .+.+ .+.+....+.|+ -.+++|-.+ .-|++.+|-+.+.|+
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi--~fvdapVsGG~~gA~~G~~im~GG~~~a~~ 147 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGI--LFVGSGVSGGEEGARKGPSIMPGGSAEAWP 147 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCC--EEEcCCCCCCHHHHhcCCcCCCCCCHHHHH
Confidence 1110 01 1211123 89999975 3343 334445556788 578887422 246888888877775
Q ss_pred CCCCeE---ecC----Cc----chhhhHHHHHHHHHH
Q 014890 210 PDEPII---SNA----SC----TTNCLAPFVKVLDQK 235 (416)
Q Consensus 210 ~~~~II---Sna----SC----TTn~Lap~lkvL~~~ 235 (416)
.-.++. +.. .| -...-+..+|.+|+-
T Consensus 148 ~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~ 184 (467)
T TIGR00873 148 LVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNG 184 (467)
T ss_pred HHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHH
Confidence 422222 111 13 234457777777753
No 354
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=50.26 E-value=35 Score=37.30 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.2
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
+-||.|.|+|++|+..++.+....
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lG 187 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLG 187 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC
Confidence 369999999999999999888765
No 355
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=50.17 E-value=1e+02 Score=30.11 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=47.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|.|.+|+.+++.+.... . .++++.. +.+....+.+ +|. + . .++-+...+ ...
T Consensus 167 ~~VLI~g~g~vG~~~~~lak~~G---~~~v~~~~~--s~~~~~~~~~----~g~-~---------~-vi~~~~~~~-~~~ 225 (339)
T cd08232 167 KRVLVTGAGPIGALVVAAARRAG---AAEIVATDL--ADAPLAVARA----MGA-D---------E-TVNLARDPL-AAY 225 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHH----cCC-C---------E-EEcCCchhh-hhh
Confidence 47899999999999988777654 4 5555532 2222222221 121 0 0 011110000 000
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
.+ ...++|+|++|+|.....+.+..+++.+.+
T Consensus 226 ----~~-~~~~vd~vld~~g~~~~~~~~~~~L~~~G~ 257 (339)
T cd08232 226 ----AA-DKGDFDVVFEASGAPAALASALRVVRPGGT 257 (339)
T ss_pred ----hc-cCCCccEEEECCCCHHHHHHHHHHHhcCCE
Confidence 00 123699999999964444556677777663
No 356
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=50.09 E-value=91 Score=32.21 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=23.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
-+|.|.|.|.||..++..+.... ..++.+.|.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~G---a~~vi~~d~ 218 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLG---AAVVIVGDL 218 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CceEEEeCC
Confidence 47889999999999988877664 554445443
No 357
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=50.06 E-value=35 Score=34.32 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=50.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+|-|.+|..+++.+.... . .++++... .+....+-+ +|. + -.++.+...+. +
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G---~~~v~~~~~~--~~k~~~~~~----~g~---~--------~~i~~~~~~~~--~ 245 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAG---CTTIIAVDIV--DSRLELAKE----LGA---T--------HVINPKEEDLV--A 245 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEeCC--HHHHHHHHH----cCC---c--------EEecCCCcCHH--H
Confidence 47999999999999888777664 4 35555432 222222111 221 0 00111000000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV 186 (416)
...++. ..++|+|+||+|.-...+.+..+++.+.+-|
T Consensus 246 ~v~~~~--~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 246 AIREIT--GGGVDYALDTTGVPAVIEQAVDALAPRGTLA 282 (365)
T ss_pred HHHHHh--CCCCcEEEECCCCcHHHHHHHHHhccCCEEE
Confidence 001111 2479999999986544566777887776433
No 358
>PLN02572 UDP-sulfoquinovose synthase
Probab=50.03 E-value=28 Score=36.70 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+||-|-| .|.||+.+++.|.+++ .+|+++.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G---~~V~~~d 78 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRG---YEVAIVD 78 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CeEEEEe
Confidence 46899999 8999999999999875 6887765
No 359
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.25 E-value=24 Score=36.06 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-||||+|.|.||+.++..+.... ++|+..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG---~~V~l~D 37 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG---LDVVAWD 37 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC---CeEEEEe
Confidence 37999999999999998887664 7876554
No 360
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=49.18 E-value=28 Score=34.71 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.8
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||-|.| .|.||+.+++.|.+++ .+|+++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G---~~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRG---YTVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 45899999 8999999999999875 68877644
No 361
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=48.86 E-value=37 Score=33.35 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|+|.|.+|+.++..+.... +.|+++..
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~G---~~vi~~~~ 197 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASALG---ARVIAVDI 197 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEEeC
Confidence 37999999999999988877664 67776643
No 362
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.73 E-value=91 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=22.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaIN 101 (416)
-+|.|+|.|.||..++..+.... .+ ++++.
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G---~~~v~~~~ 198 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRG---AGRIIAVG 198 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCeEEEEe
Confidence 47999999999999988776654 43 54443
No 363
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.15 E-value=27 Score=34.39 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=24.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.||+|.|.|.+|..++..+.... .+|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G---~~V~l~d 33 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHG---FDVTIYD 33 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC---CeEEEEe
Confidence 48999999999999998887654 5665554
No 364
>PLN02240 UDP-glucose 4-epimerase
Probab=48.00 E-value=28 Score=34.30 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=27.0
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..||.|.| .|.||+.+++.|.++. .+|+++..
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g---~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAG---YKVVVIDN 37 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 46899999 8999999999999875 68888753
No 365
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=48.00 E-value=34 Score=27.52 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.0
Q ss_pred eeEEEEccChhHHHHHHHHHhC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGR 90 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~ 90 (416)
.|++|.|+|.+|+.+++.+.+.
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~ 45 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADE 45 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHc
Confidence 4899999999999999998875
No 366
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=47.85 E-value=1.4e+02 Score=28.41 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=24.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-||.|+|-|.+|..-++.|++.+ -.|+.|..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~g---a~VtVvsp 40 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAG---AQLRVIAE 40 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC---CEEEEEcC
Confidence 38999999999999999998865 35544543
No 367
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=47.61 E-value=32 Score=33.69 Aligned_cols=29 Identities=17% Similarity=0.451 Sum_probs=23.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||-|-| .|-||+.+.+.|.++. +|+++.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g----~V~~~~ 30 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG----NLIALD 30 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC----CEEEec
Confidence 4899999 8999999999988763 355554
No 368
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=47.39 E-value=32 Score=29.85 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=24.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||+|.|.|.+|+.+++.+.... .-+|..++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r 51 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELG--AAKIVIVNR 51 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcC
Confidence 58999999999999999998763 134555553
No 369
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=47.10 E-value=31 Score=35.16 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=19.6
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCC
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~ 91 (416)
+||+|.|. |.||..++..+..++
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC
Confidence 48999997 999999998887653
No 370
>PRK09291 short chain dehydrogenase; Provisional
Probab=47.09 E-value=30 Score=32.25 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.3
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|..+|-|.| .|.||+.+++.+.++. .+|++...
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G---~~v~~~~r 34 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKG---HNVIAGVQ 34 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 334789999 8999999999998875 67777653
No 371
>PLN02206 UDP-glucuronate decarboxylase
Probab=47.00 E-value=24 Score=37.29 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.6
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||.|.| .|-||+.+++.|.+++ .+|+++..
T Consensus 119 ~~kILVTGatGfIGs~Lv~~Ll~~G---~~V~~ld~ 151 (442)
T PLN02206 119 GLRVVVTGGAGFVGSHLVDRLMARG---DSVIVVDN 151 (442)
T ss_pred CCEEEEECcccHHHHHHHHHHHHCc---CEEEEEeC
Confidence 47999999 8999999999999875 68888754
No 372
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=46.85 E-value=58 Score=32.06 Aligned_cols=30 Identities=17% Similarity=0.060 Sum_probs=23.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|+| .|.+|..+++.+..+. .+++++-
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~G---~~Vi~~~ 183 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLKG---CYVVGSA 183 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHcC---CEEEEEe
Confidence 3799999 5999999998877764 6766554
No 373
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.54 E-value=94 Score=30.34 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=50.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|+| -|.||..+++.+..+. .+++++-. +.+....+.+ +|- + -.++.+.-.-.. +
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~--s~~~~~~~~~----lGa-~----------~vi~~~~~~~~~-~ 198 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAG--SDEKVAYLKK----LGF-D----------VAFNYKTVKSLE-E 198 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHH----cCC-C----------EEEeccccccHH-H
Confidence 3799999 6999999988877664 57766543 2333333321 221 0 011110000000 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
....+. ..++|+||||+|.-. .+.+-.+++.|.+-|.+
T Consensus 199 ~~~~~~--~~gvdvv~d~~G~~~-~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 199 TLKKAS--PDGYDCYFDNVGGEF-SNTVIGQMKKFGRIAIC 236 (325)
T ss_pred HHHHhC--CCCeEEEEECCCHHH-HHHHHHHhCcCcEEEEe
Confidence 000111 137999999999643 34555667666644433
No 374
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=46.48 E-value=70 Score=31.58 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.6
Q ss_pred EEc-cChhHHHHHHHHHhCC
Q 014890 73 ING-FGRIGRNFLRCWHGRK 91 (416)
Q Consensus 73 ING-fGrIGR~vlr~l~~~~ 91 (416)
|-| .|.+|+.+++.|+++.
T Consensus 2 VTGgsGflG~~iv~~Ll~~g 21 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERG 21 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCC
Confidence 456 8999999999999985
No 375
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=46.44 E-value=38 Score=33.61 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCc-eEEEE
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~-~vVaI 100 (416)
|+|.|.|.+|..++..+..+. + +|+.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~---l~eV~L~ 28 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKE---LGDVVLL 28 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCC---CcEEEEE
Confidence 689999999999988776653 3 65555
No 376
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=46.35 E-value=24 Score=36.52 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=24.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||.+.|.|.|||-++..++.+.. .+|+.|.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g--~~V~~vd 31 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNG--FEVTFVD 31 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCC--CeEEEEE
Confidence 489999999999977766666542 7777776
No 377
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.88 E-value=30 Score=34.76 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
|||+|.|.|.+|..++..+..++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g 23 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRG 23 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 48999999999999999888764
No 378
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=45.63 E-value=89 Score=30.76 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=25.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|.|.|.|.+||.++++|....- -+|..+|.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R 155 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGV--AEITIVNR 155 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeC
Confidence 479999999999999999987642 35666665
No 379
>PRK14851 hypothetical protein; Provisional
Probab=45.43 E-value=7.4 Score=43.74 Aligned_cols=99 Identities=20% Similarity=0.206 Sum_probs=52.1
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe-cCCChhHHhhhhcc-ccccccCCCceeeecCCeEEEC-CEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN-DTGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN-d~~~~~~~a~Llky-DS~~G~f~~~v~~~~~~~i~v~-G~~I~v~ 144 (416)
..||+|.|.|-+|-.++..|....-+.+.| |. |..++..+-.-+-| .+..|+.+.++ ..+.-..+| +-.|..+
T Consensus 43 ~~~VlIvG~GGlGs~va~~Lar~GVG~l~L--vD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v--~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 43 EAKVAIPGMGGVGGVHLITMVRTGIGRFHI--ADFDQFEPVNVNRQFGARVPSFGRPKLAV--MKEQALSINPFLEITPF 118 (679)
T ss_pred cCeEEEECcCHHHHHHHHHHHHhCCCeEEE--EcCCEecccccccCcCcChhhCCCHHHHH--HHHHHHHhCCCCeEEEE
Confidence 468999999999999999887654222332 32 22233333332212 23346654332 112112233 2234444
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCCC
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVFV 170 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f~ 170 (416)
.+. +++++..-..++|+||||+-.|.
T Consensus 119 ~~~i~~~n~~~~l~~~DvVid~~D~~~ 145 (679)
T PRK14851 119 PAGINADNMDAFLDGVDVVLDGLDFFQ 145 (679)
T ss_pred ecCCChHHHHHHHhCCCEEEECCCCCc
Confidence 322 23333222348999999998763
No 380
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=45.22 E-value=26 Score=37.52 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=69.2
Q ss_pred eEEEEccChhHHHHHHHHHhCCC---CCceEEEEec-CCChhHHhhhhccc-cccccCCCceeeecCCeEEEC-CEEEEE
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKD---SPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVD-GKVIQV 143 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~---~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~i~v~-G~~I~v 143 (416)
||.|+|.|.+|-.+++.|...+- ++=.|..+.+ ..+...+..-+-|. ..-|+.+..+- .+.-..+| +-.|..
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vA--a~~l~~lNp~v~I~a 78 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVA--AAAVKAMNPDLKITA 78 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHH--HHHHHHHCCCCEEEE
Confidence 68999999999999999876541 0013333432 33444444332222 22355433211 00000111 111222
Q ss_pred Eecc-CCC---CCC---CCCccccEEEcCCCCCCCHhhHHHH-HHcCCCEEEEcCCC---CCCCCeEEeecCccCCCCC-
Q 014890 144 VSNR-NPV---NLP---WGDLGIDLVIEGTGVFVDREGAGKH-IQAGAKKVLITAPG---KGDIPTYVVGVNADAYKPD- 211 (416)
Q Consensus 144 ~~~~-~p~---~i~---W~~~gvDiVie~TG~f~s~~~a~~h-l~aGAkkVIIsaps---kd~~ptvV~gVN~~~y~~~- 211 (416)
...+ +++ .++ | .+.|+|++|.-.+-++...... ...|. -+|.+.. ++....+++++- +.|...
T Consensus 79 ~~~~v~~~~~~~~~~~f~--~~~DvVi~alDn~~aR~~vn~~C~~~~i--Pli~~gt~G~~G~v~v~iP~~t-e~y~~~~ 153 (435)
T cd01490 79 LQNRVGPETEHIFNDEFW--EKLDGVANALDNVDARMYVDRRCVYYRK--PLLESGTLGTKGNTQVVIPHLT-ESYSSSR 153 (435)
T ss_pred EecccChhhhhhhhHHHh--cCCCEEEECCCCHHHHHHHHHHHHHhCC--CEEEEecccceeEEEEEeCCCC-CCccCCC
Confidence 2211 111 011 3 3789999999888666544322 23443 3444332 344667777763 233311
Q ss_pred -CCeEecCCcch
Q 014890 212 -EPIISNASCTT 222 (416)
Q Consensus 212 -~~IISnaSCTT 222 (416)
..--+.|+||-
T Consensus 154 ~p~~~~~P~Ctl 165 (435)
T cd01490 154 DPPEKSIPLCTL 165 (435)
T ss_pred CCCCCCCCCccc
Confidence 11125667764
No 381
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=44.91 E-value=98 Score=29.88 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=23.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|+| .|.+|..+++.+.... .+++++.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~G---~~vi~~~ 177 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLLG---ARVVGIA 177 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHcC---CEEEEEe
Confidence 4789999 7999999988887764 5776664
No 382
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=44.90 E-value=44 Score=32.73 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=51.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
=+|.|+|-|.+|..+++.+..+. .. ++++... .+.. .+++ .+|. + -.++.+.... .+
T Consensus 170 ~~vlI~g~g~vg~~~~~lak~~G---~~~v~~~~~~--~~~~-~~~~---~~ga-~----------~v~~~~~~~~--~~ 227 (345)
T cd08287 170 STVVVVGDGAVGLCAVLAAKRLG---AERIIAMSRH--EDRQ-ALAR---EFGA-T----------DIVAERGEEA--VA 227 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEECCC--HHHH-HHHH---HcCC-c----------eEecCCcccH--HH
Confidence 37889999999999988777664 54 5555432 1111 1111 1221 0 0111110000 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEc
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIs 189 (416)
....+. ...++|+++||+|.-...+.+..++..+..-+++.
T Consensus 228 ~i~~~~-~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 228 RVRELT-GGVGADAVLECVGTQESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred HHHHhc-CCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEec
Confidence 000111 12379999999987555566778887776434333
No 383
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=44.57 E-value=1.5e+02 Score=28.67 Aligned_cols=91 Identities=23% Similarity=0.172 Sum_probs=48.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
=+|.|+|.|.+|+.+++.+.... .. ++++.. +.+....+-++ |. + ..++...-... .+
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G---~~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~~~-~~ 219 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNG---ASRVTVAEP--NEEKLELAKKL----GA---T--------ETVDPSREDPE-AQ 219 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEECC--CHHHHHHHHHh----CC---e--------EEecCCCCCHH-HH
Confidence 37899999999999988877764 55 555533 23333333221 11 0 01111000000 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
... ...++|++|+|+|.-...+.+..+++.+.+
T Consensus 220 --~~~--~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~ 252 (334)
T cd08234 220 --KED--NPYGFDVVIEATGVPKTLEQAIEYARRGGT 252 (334)
T ss_pred --HHh--cCCCCcEEEECCCChHHHHHHHHHHhcCCE
Confidence 001 123799999999864444556677777663
No 384
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=44.40 E-value=1.7e+02 Score=28.56 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhh
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHL 112 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~L 112 (416)
-+|.|+|.|.+|+.+++.+.... .+++++.. +.+...++
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~~g---~~v~~~~~--s~~~~~~~ 199 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKARG---ARVIVVDI--DDERLEFA 199 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CeEEEECC--CHHHHHHH
Confidence 37899999999999998887764 67766643 34444433
No 385
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=44.31 E-value=22 Score=38.58 Aligned_cols=154 Identities=18% Similarity=0.276 Sum_probs=81.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhc-ccccccc----CCCceeeecCCeEEECCEEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLK-YDSTLGI----FEADVKPVGTDGISVDGKVIQV 143 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~Llk-yDS~~G~----f~~~v~~~~~~~i~v~G~~I~v 143 (416)
.+||+.|+|..|+.+++.|.+.. ++|.+-|-. ++...-+.+ ... .|. ...+++.+... +.--+..|..
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G---~~V~V~NRt--~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~~-l~~~dvIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKG---FPISVYNRT--TSKVDETVERAKK-EGNLPLYGFKDPEDFVLS-IQKPRSVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCC---CeEEEECCC--HHHHHHHHHhhhh-cCCcccccCCCHHHHHhc-CCCCCEEEEE
Confidence 48999999999999999999875 888888753 222222221 000 010 00011100000 0000111111
Q ss_pred EeccCCCC--------CCCCCccccEEEcCCCCC--CCHhhHHHHHHcCCCEEEEcCCCCC------CCCeEEeecCccC
Q 014890 144 VSNRNPVN--------LPWGDLGIDLVIEGTGVF--VDREGAGKHIQAGAKKVLITAPGKG------DIPTYVVGVNADA 207 (416)
Q Consensus 144 ~~~~~p~~--------i~W~~~gvDiVie~TG~f--~s~~~a~~hl~aGAkkVIIsapskd------~~ptvV~gVN~~~ 207 (416)
+ .+++. ++--..| |++||++-.. .+++.+..+.+.|+ -.+++|-.+ .-|++.+|=+.+.
T Consensus 80 v--~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi--~fldapVSGG~~gA~~G~~im~GG~~~a 154 (493)
T PLN02350 80 V--KAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGL--LYLGMGVSGGEEGARNGPSLMPGGSFEA 154 (493)
T ss_pred C--CCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCC--eEEeCCCcCCHHHhcCCCeEEecCCHHH
Confidence 1 11110 1211223 8999997664 34455566667788 478888421 3469999999888
Q ss_pred CCCCCCeE---ecC----Ccc----hhhhHHHHHHHHH
Q 014890 208 YKPDEPII---SNA----SCT----TNCLAPFVKVLDQ 234 (416)
Q Consensus 208 y~~~~~II---Sna----SCT----Tn~Lap~lkvL~~ 234 (416)
|+.-.++. +.- .|. ...-+-.+|.+|+
T Consensus 155 ~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N 192 (493)
T PLN02350 155 YKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHN 192 (493)
T ss_pred HHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHH
Confidence 76433322 211 233 2345667777775
No 386
>PLN02702 L-idonate 5-dehydrogenase
Probab=44.27 E-value=1.1e+02 Score=30.57 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=20.9
Q ss_pred cccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 158 GIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 158 gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
++|+||||+|.-...+.+..+++.+.+
T Consensus 254 ~~d~vid~~g~~~~~~~~~~~l~~~G~ 280 (364)
T PLN02702 254 GIDVSFDCVGFNKTMSTALEATRAGGK 280 (364)
T ss_pred CCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 689999999964455667788887774
No 387
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=43.99 E-value=31 Score=34.57 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=27.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+||-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g---~~V~~~d~ 47 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLN---QTVIGLDN 47 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5899999 8999999999999875 68888854
No 388
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=43.98 E-value=8.3 Score=32.40 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=27.5
Q ss_pred ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCC
Q 014890 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG 192 (416)
Q Consensus 157 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsaps 192 (416)
.++|+||||+|.--..+.+-..++.|.+-|++..+.
T Consensus 57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 489999999997666666777777787667776555
No 389
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=43.95 E-value=35 Score=34.76 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=25.3
Q ss_pred ceeEEEEcc-ChhHHHHHHHHHhCCC----CCceEEEEe
Q 014890 68 KLKVAINGF-GRIGRNFLRCWHGRKD----SPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGf-GrIGR~vlr~l~~~~~----~~~~vVaIN 101 (416)
++||+|.|. |.||..+++.|..++- ...+|+.+.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D 40 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLD 40 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEE
Confidence 579999996 9999999999887531 113666663
No 390
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=43.64 E-value=1.9e+02 Score=29.30 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=23.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|.| .|.||..++..+.... ++++++-
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~G---~~vv~~~ 225 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAAG---ANPVAVV 225 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CeEEEEe
Confidence 4899999 5999999988777664 6766663
No 391
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=43.59 E-value=1e+02 Score=31.65 Aligned_cols=34 Identities=18% Similarity=-0.016 Sum_probs=23.9
Q ss_pred ccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcC
Q 014890 157 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITA 190 (416)
Q Consensus 157 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsa 190 (416)
.++|+|||++|.-...+.+-.+++.+.+.|++.+
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 4799999999975555666677775555555543
No 392
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=43.36 E-value=56 Score=31.91 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=25.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
-+|.|+| .|.+|..+++.+.... .+++++.+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~ 180 (341)
T cd08290 148 DWVIQNGANSAVGQAVIQLAKLLG---IKTINVVRD 180 (341)
T ss_pred CEEEEccchhHHHHHHHHHHHHcC---CeEEEEEcC
Confidence 3799998 6999999998888764 678777764
No 393
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=43.01 E-value=83 Score=30.31 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=51.0
Q ss_pred eEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+|.|+|- |.+|..+++.+..+. ..++++... .+....+.+ +|- + . .++.+... .+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~-~-~---------v~~~~~~~---~~~ 205 (326)
T cd08289 149 PVLVTGATGGVGSLAVSILAKLG---YEVVASTGK--ADAADYLKK----LGA-K-E---------VIPREELQ---EES 205 (326)
T ss_pred EEEEEcCCchHHHHHHHHHHHCC---CeEEEEecC--HHHHHHHHH----cCC-C-E---------EEcchhHH---HHH
Confidence 7899995 999999988887765 677766543 222222222 121 0 0 01111100 000
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
-.. +...++|+|+||+|. ...+.+-.++..+.+-+.+
T Consensus 206 ~~~--~~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 206 IKP--LEKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred HHh--hccCCcCEEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 001 122468999999997 4455666777766643333
No 394
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=42.78 E-value=56 Score=31.99 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=50.6
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
-+|.|+|- |.+|..+++.+.... . +|+++-.. .+....+.+ .+|- + . .++.+...+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G---~~~Vi~~~~s--~~~~~~~~~---~lGa---~-------~-vi~~~~~~~~-- 214 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG---CSRVVGICGS--DEKCQLLKS---ELGF---D-------A-AINYKTDNVA-- 214 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CCEEEEEcCC--HHHHHHHHH---hcCC---c-------E-EEECCCCCHH--
Confidence 37999995 999999988777664 5 67776432 222222221 1221 0 0 0111000000
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+...++. ..|+|+||||+|.-. .+.+-.+++.|.+-|.+
T Consensus 215 ~~i~~~~--~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 215 ERLRELC--PEGVDVYFDNVGGEI-SDTVISQMNENSHIILC 253 (345)
T ss_pred HHHHHHC--CCCceEEEECCCcHH-HHHHHHHhccCCEEEEE
Confidence 0000111 138999999999753 35566777777744433
No 395
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.74 E-value=1.4e+02 Score=31.16 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=50.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCCC-hhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec-
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN- 146 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~~-~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~- 146 (416)
.||.|.|.|..|+..++.|+... +..+|. +.|... +....+| +. | |++...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~-~~D~~~~~~~~~~l-----------------~~------g--~~~~~g~ 60 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVK-VIDTRETPPGQEQL-----------------PE------D--VELHSGG 60 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEE-EEeCCCCchhHHHh-----------------hc------C--CEEEeCC
Confidence 47999999999999999998763 124543 455321 1100011 00 1 222222
Q ss_pred cCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
.++++++ +.|+||=+.|.-.+.+......+.|.
T Consensus 61 ~~~~~~~----~~d~vV~SpgI~~~~p~~~~a~~~gi 93 (438)
T PRK04663 61 WNLEWLL----EADLVVTNPGIALATPEIQQVLAAGI 93 (438)
T ss_pred CChHHhc----cCCEEEECCCCCCCCHHHHHHHHCCC
Confidence 2444442 57999999999777666665566665
No 396
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=42.71 E-value=68 Score=36.18 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=70.6
Q ss_pred eeEEEEccChhHHHHHHHHHh-CCCCCceEEEEecCCChhHHhhhhcc-------ccccccCCCceeeecCCeEEECCEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHG-RKDSPLEVVAINDTGGVKQASHLLKY-------DSTLGIFEADVKPVGTDGISVDGKV 140 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~-~~~~~~~vVaINd~~~~~~~a~Llky-------DS~~G~f~~~v~~~~~~~i~v~G~~ 140 (416)
.||+|.|.|.+|+.++..+.. .. ++|+.+ |. +.+.+...+++ .-..|++..... +..+ ..
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G---~~V~l~-d~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~----~~ 372 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAG---IPVRIK-DI-NPQGINNALKYAWKLLDKGVKRRHMTPAER---DNQM----AL 372 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcC---CeEEEE-eC-CHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHH----cC
Confidence 479999999999999876653 33 665444 32 23332222211 001122211100 0000 12
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCCCCHh-----hHHHHHHcCCCEEEEcCCCC-C--------CCCeEEeec---
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDRE-----GAGKHIQAGAKKVLITAPGK-G--------DIPTYVVGV--- 203 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~-----~a~~hl~aGAkkVIIsapsk-d--------~~ptvV~gV--- 203 (416)
|++. .+.+.+ .++|+||||...-...+ ....+....+ +|-|+.|. . ..|-=+.|.
T Consensus 373 i~~~--~~~~~~----~~adlViEav~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la~~~~~p~r~~g~Hff 444 (699)
T TIGR02440 373 ITGT--TDYRGF----KDVDIVIEAVFEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIAAAASRPENVIGLHYF 444 (699)
T ss_pred eEEe--CChHHh----ccCCEEEEeccccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHHHhcCCcccEEEEecC
Confidence 3332 233333 48999999977655443 2233444444 77777661 0 234333443
Q ss_pred CccCCCCCCCeEecCCcchhhhHHHHHHHH
Q 014890 204 NADAYKPDEPIISNASCTTNCLAPFVKVLD 233 (416)
Q Consensus 204 N~~~y~~~~~IISnaSCTTn~Lap~lkvL~ 233 (416)
|+-.+-+--.||..+.++--.+.-+...+.
T Consensus 445 nP~~~~~lVEvv~g~~T~~~~~~~~~~~~~ 474 (699)
T TIGR02440 445 SPVEKMPLVEVIPHAGTSEQTIATTVALAK 474 (699)
T ss_pred CccccCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 333232223477776665555555555444
No 397
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=42.28 E-value=2.4e+02 Score=26.79 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=51.0
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|.|.|- |.+|+.+++.+.... ..+.++.. +.+....+.+ +|. . ...+..+
T Consensus 134 ~~vli~g~~~~~g~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~----~g~-~---------~~~~~~~-------- 186 (305)
T cd08270 134 RRVLVTGASGGVGRFAVQLAALAG---AHVVAVVG--SPARAEGLRE----LGA-A---------EVVVGGS-------- 186 (305)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHH----cCC-c---------EEEeccc--------
Confidence 47899995 999999988887764 56666643 2333333322 221 0 0101110
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVII 188 (416)
+ +...++|+++||+|.- ..+.+-.++..+.+-|.+
T Consensus 187 ---~--~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 187 ---E--LSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSV 221 (305)
T ss_pred ---c--ccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEE
Confidence 0 1123799999999974 455667788777644444
No 398
>PRK08017 oxidoreductase; Provisional
Probab=42.28 E-value=39 Score=31.41 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=24.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g---~~v~~~~r 34 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRG---YRVLAACR 34 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3699999 6999999999998774 57766643
No 399
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=42.17 E-value=1.1e+02 Score=29.29 Aligned_cols=88 Identities=18% Similarity=0.109 Sum_probs=47.3
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccC
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN 148 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~ 148 (416)
+|.|+| .|.+|..+++.+.... .+|++... +.+...++.++ |. +. .++.+... ..
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g---~~v~~~~~--~~~~~~~~~~~----g~----------~~-~~~~~~~~----~~ 204 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLG---YTVVALTG--KEEQADYLKSL----GA----------SE-VLDREDLL----DE 204 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcC---CEEEEEeC--CHHHHHHHHhc----CC----------cE-EEcchhHH----HH
Confidence 699999 5999999988777664 56554433 23334344322 21 00 11111000 00
Q ss_pred CCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 149 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 149 p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
..+. +...++|+|+||+|.. ..+.+..++..+.
T Consensus 205 ~~~~-~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g 237 (325)
T cd05280 205 SKKP-LLKARWAGAIDTVGGD-VLANLLKQTKYGG 237 (325)
T ss_pred HHHH-hcCCCccEEEECCchH-HHHHHHHhhcCCC
Confidence 0000 1224789999999973 4455566666555
No 400
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=42.12 E-value=17 Score=35.33 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.1
Q ss_pred EEEEcc-ChhHHHHHHHHHhCC
Q 014890 71 VAINGF-GRIGRNFLRCWHGRK 91 (416)
Q Consensus 71 VaINGf-GrIGR~vlr~l~~~~ 91 (416)
|+|.|. |.+|..++..+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 689998 999999999887654
No 401
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=41.72 E-value=35 Score=32.91 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=25.4
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g---~~V~~~~r 32 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQG---EEVRVLVR 32 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCC---CEEEEEEe
Confidence 789999 7999999999998875 57777764
No 402
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=41.62 E-value=34 Score=38.21 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=25.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||+|.|+|.+|+.+++.|..... ..+|++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~-~~~V~~~d~ 36 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGL-AREVVAVDR 36 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CCEEEEEEC
Confidence 589999999999999999987531 136666654
No 403
>PRK08328 hypothetical protein; Provisional
Probab=41.59 E-value=15 Score=35.48 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.9
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||.|.|.|-+|..++..|....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~G 50 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAG 50 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC
Confidence 458999999999999999987654
No 404
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=41.33 E-value=1.1e+02 Score=29.83 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|+| .|.+|..+++.+.... .+++++.+
T Consensus 164 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~ 195 (350)
T cd08248 164 KRVLILGGSGGVGTFAIQLLKAWG---AHVTTTCS 195 (350)
T ss_pred CEEEEECCCChHHHHHHHHHHHCC---CeEEEEeC
Confidence 4789999 7999999998877664 57766654
No 405
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=41.30 E-value=31 Score=36.45 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||||.|.|.+|.-+..++.. . ++|++++-
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~---~~V~g~D~ 36 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-S---RQVVGFDV 36 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-C---CEEEEEeC
Confidence 589999999999999888554 2 78888874
No 406
>PRK08223 hypothetical protein; Validated
Probab=41.02 E-value=19 Score=36.54 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=50.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCceeeecCCeEEECC-EEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKPVGTDGISVDG-KVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~~~~~~~i~v~G-~~I~v~ 144 (416)
.-||.|.|.|-+|-.++..|....-+ +++-|.+ ..+...+-.-+-|+ +.-|+.+.++ ..+.-..+|- -.|..+
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~--a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIG--KFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV--LAEMVRDINPELEIRAF 102 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCC--eEEEEeCCCcchhccccccCcChhHCCCcHHHH--HHHHHHHHCCCCEEEEE
Confidence 46899999999999999988765422 2222332 33444444333222 2346544322 1111112221 123332
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCC
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVF 169 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f 169 (416)
.++ +++++..-..+.|+|+||+..|
T Consensus 103 ~~~l~~~n~~~ll~~~DlVvD~~D~~ 128 (287)
T PRK08223 103 PEGIGKENADAFLDGVDVYVDGLDFF 128 (287)
T ss_pred ecccCccCHHHHHhCCCEEEECCCCC
Confidence 211 2333222224899999999987
No 407
>PRK07326 short chain dehydrogenase; Provisional
Probab=40.83 E-value=42 Score=30.83 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=25.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|-|.| .|.||+.+++.+.+++ .+|+++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g---~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEG---YKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEeeC
Confidence 5799999 8999999999998764 67777753
No 408
>PLN00198 anthocyanidin reductase; Provisional
Probab=40.74 E-value=40 Score=33.32 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=25.2
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEE
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
+.+|.|-| .|-||+.+++.|.++. .+|+++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~g---~~V~~~ 39 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQKG---YAVNTT 39 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHCC---CEEEEE
Confidence 46899999 9999999999999875 576554
No 409
>PRK07411 hypothetical protein; Validated
Probab=40.70 E-value=13 Score=38.83 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=53.6
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhccc-cccccCCCceee----ecCCeEEECCEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDGKVI 141 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~LlkyD-S~~G~f~~~v~~----~~~~~i~v~G~~I 141 (416)
..||.|.|.|-+|-.++..|..-.-+.+- -|.+ ..+...+-.-+-|. ..-|+.+..+-. .-+..+.|....-
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~--lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~ 115 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIG--IVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET 115 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEE--EECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence 46999999999999999988765422122 2322 22333333311111 112443321100 0122222221111
Q ss_pred EEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHH-HHHHcCCC
Q 014890 142 QVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAG-KHIQAGAK 184 (416)
Q Consensus 142 ~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~-~hl~aGAk 184 (416)
.+..+ +..++ ..+.|+||+|+..+.++.... ...+.|..
T Consensus 116 ~~~~~-~~~~~---~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 116 RLSSE-NALDI---LAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ccCHH-hHHHH---HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 12111 11111 137899999999998776544 33445553
No 410
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=40.36 E-value=41 Score=34.48 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.5
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|||.|-|..||++..++...+ ++++++..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG---~~v~~~d~ 33 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLG---YKVIVLDP 33 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CEEEEEeC
Confidence 48999999999999999888875 88877754
No 411
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=40.32 E-value=37 Score=32.32 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.2
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
||.|.| .|.||+.+++.|.++. .+|+++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g---~~v~~~~ 30 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG---RVVVALT 30 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC---CEEEEeC
Confidence 688999 8999999999998864 5777664
No 412
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=39.44 E-value=41 Score=32.33 Aligned_cols=32 Identities=16% Similarity=0.147 Sum_probs=25.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
-+|.|+| .|.||..+++.+.... ..++++.+.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~G---~~v~~~~~~ 173 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAARG---INVINLVRR 173 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHCC---CeEEEEecC
Confidence 4799998 6999999999887765 677777653
No 413
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=39.01 E-value=1e+02 Score=31.01 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=19.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
=+|.|+|-|.+|..++..+....
T Consensus 185 ~~vlI~g~g~vG~~a~~~a~~~G 207 (365)
T cd05279 185 STCAVFGLGGVGLSVIMGCKAAG 207 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC
Confidence 37899999999999988877664
No 414
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.93 E-value=67 Score=33.61 Aligned_cols=99 Identities=20% Similarity=0.125 Sum_probs=56.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecCC-ChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~~-~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
..+|||.|.|-+|-.-.+..-... ++|++|.... .-|.+...| | ++.. |...
T Consensus 182 G~~vgI~GlGGLGh~aVq~AKAMG---~rV~vis~~~~kkeea~~~L------G---------Ad~f---------v~~~ 234 (360)
T KOG0023|consen 182 GKWVGIVGLGGLGHMAVQYAKAMG---MRVTVISTSSKKKEEAIKSL------G---------ADVF---------VDST 234 (360)
T ss_pred CcEEEEecCcccchHHHHHHHHhC---cEEEEEeCCchhHHHHHHhc------C---------ccee---------EEec
Confidence 368999998778887777666665 8999998642 222221111 1 1111 1112
Q ss_pred cCCCCCCCCCccccEEEcCCC--CCCCHhhHHHHHHcCCCEEEEcCCCC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTG--VFVDREGAGKHIQAGAKKVLITAPGK 193 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG--~f~s~~~a~~hl~aGAkkVIIsapsk 193 (416)
.||....=-..-.|..++++- .....+.+...++.+-+=|.+..|.+
T Consensus 235 ~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 235 EDPDIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred CCHHHHHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCC
Confidence 233221101112355666666 44455677788887777788888875
No 415
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=38.50 E-value=52 Score=28.57 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=22.5
Q ss_pred EEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|+|.|.|.||..+.-.|.+.. .+|..+-.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g---~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG---HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT---CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC---CceEEEEc
Confidence 789999999999988887754 46655653
No 416
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=38.44 E-value=16 Score=38.05 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=54.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec-CCChhHHhhhhcc-ccccccCCCceeeecCCeEEEC-CEEEEEE
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKY-DSTLGIFEADVKPVGTDGISVD-GKVIQVV 144 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd-~~~~~~~a~Llky-DS~~G~f~~~v~~~~~~~i~v~-G~~I~v~ 144 (416)
..||.|.|.|-+|-.++..|....-+ .+..|.+ ..+...+..-+-| .+.-|+.+.++- ...--.+| .-.|...
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a--~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVG--TLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSA--RDSIVEINPLVNVRLH 117 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecCcccccccccChhcCCChHHHHH--HHHHHHhCCCcEEEEE
Confidence 46999999999999999988765422 2222332 2344333332222 222455433210 00000111 1112222
Q ss_pred ecc-CCCCCCCCCccccEEEcCCCCCCCHhhHHH-HHHcCC
Q 014890 145 SNR-NPVNLPWGDLGIDLVIEGTGVFVDREGAGK-HIQAGA 183 (416)
Q Consensus 145 ~~~-~p~~i~W~~~gvDiVie~TG~f~s~~~a~~-hl~aGA 183 (416)
..+ ++.+++=-..+.|+||+|+..+.++..... -.+.|.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~ 158 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGK 158 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 111 111110011478999999999877654432 234454
No 417
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=38.38 E-value=12 Score=40.43 Aligned_cols=31 Identities=19% Similarity=0.102 Sum_probs=24.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-+|+|.|.|.+|-..+..|.... .+|+.+.
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G---~~V~v~e 167 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMG---HAVTIFE 167 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CeEEEEe
Confidence 358999999999988888777654 5666664
No 418
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=38.34 E-value=72 Score=29.01 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=25.5
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCC
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGG 105 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~ 105 (416)
|-|.| +|-||+.+++.|+++. .+|+++.....
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g---~~v~~~~~~~~ 33 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG---HEVIVLSRSSN 33 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---TEEEEEESCST
T ss_pred EEEEccCCHHHHHHHHHHHHcC---Ccccccccccc
Confidence 57889 9999999999999886 57766665433
No 419
>PRK07023 short chain dehydrogenase; Provisional
Probab=38.34 E-value=45 Score=31.01 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=24.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+++-|.| .|.||+.+++.+.++. .+|+.+.
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G---~~v~~~~ 32 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPG---IAVLGVA 32 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCC---CEEEEEe
Confidence 4899999 8999999999998764 5665553
No 420
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=38.26 E-value=52 Score=32.41 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=22.7
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaI 100 (416)
-+|.|+|.|.+|+.+++.+.... . .++++
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAG---ASLVIAS 194 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 37899999999999988877664 5 46666
No 421
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=38.10 E-value=42 Score=31.99 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=25.3
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|-| +|-||+.+++.|.++. +..+|++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEecC
Confidence 578999 8999999999998753 2368877753
No 422
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=37.75 E-value=52 Score=29.93 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=24.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-||.|.|-|++|...++.|++.+ -+|+.|+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~g---a~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTG---AFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CEEEEEc
Confidence 58999999999999999998864 4666664
No 423
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=37.39 E-value=44 Score=36.25 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.||||.|.|.+|+.++..+.... ++|+.+|-
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG---~~V~l~d~ 36 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAG---HQVLLYDI 36 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCC---CeEEEEeC
Confidence 37999999999999999888764 78777764
No 424
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=37.07 E-value=75 Score=29.89 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=21.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..||.|.|.|-+|-.+++.|....
T Consensus 21 ~s~VlIiG~gglG~evak~La~~G 44 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSG 44 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcC
Confidence 468999999999999999998654
No 425
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=37.01 E-value=50 Score=33.69 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.4
Q ss_pred eEEEEcc-ChhHHHHHHHHHhC
Q 014890 70 KVAINGF-GRIGRNFLRCWHGR 90 (416)
Q Consensus 70 kVaINGf-GrIGR~vlr~l~~~ 90 (416)
||+|.|. |+||..++..+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~ 22 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG 22 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc
Confidence 6999998 99999999888754
No 426
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=36.65 E-value=2e+02 Score=28.26 Aligned_cols=91 Identities=19% Similarity=0.190 Sum_probs=48.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
=+|.|+|.|.+|..+++.+.... . .|+++.. +.+...++-++ |- + ..++.+..... +
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G---~~~v~~~~~--~~~~~~~~~~~----g~---~--------~~~~~~~~~~~--~ 234 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALG---PANIIVVDI--DEAKLEAAKAA----GA---D--------VVVNGSDPDAA--K 234 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC---CCeEEEEeC--CHHHHHHHHHh----CC---c--------EEecCCCccHH--H
Confidence 37899999999999988777654 4 3444432 23333333222 21 0 11221111100 0
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGA 183 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGA 183 (416)
.-..+ +.. ++|+||||+|.....+.+..++..+.
T Consensus 235 ~~~~~-~~~-~~d~vid~~g~~~~~~~~~~~l~~~g 268 (350)
T cd08240 235 RIIKA-AGG-GVDAVIDFVNNSATASLAFDILAKGG 268 (350)
T ss_pred HHHHH-hCC-CCcEEEECCCCHHHHHHHHHHhhcCC
Confidence 00000 123 79999999996555566667777666
No 427
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.62 E-value=1.8e+02 Score=22.25 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=40.6
Q ss_pred cccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHh
Q 014890 286 IVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 344 (416)
Q Consensus 286 IIPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~ 344 (416)
.||...|+=+.+..+|-+ ...|+....|-.......+.+.+++..+-..+++.+.|++
T Consensus 4 ~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 4 TFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred ECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 367777876666667766 6678877777766666667778888766566677777765
No 428
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=36.59 E-value=1.3e+02 Score=28.93 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|+| .|.+|+.+++.+.... ..++++-
T Consensus 164 ~~vlI~ga~g~vG~~~~~~a~~~g---~~v~~~~ 194 (332)
T cd08259 164 DTVLVTGAGGGVGIHAIQLAKALG---ARVIAVT 194 (332)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CeEEEEe
Confidence 4799999 7999999999888764 6766654
No 429
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=36.53 E-value=73 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=23.7
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.|-|.||-.++..+.+.. .++.++.-++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEeccc
Confidence 7899999999999999998875 2244433344
No 430
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=36.02 E-value=59 Score=36.18 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=63.3
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
-+|-|-| .|-||..++|.+++.+ + =+|+-.... |+--|.+..+- ..+|+ ..+ -...++ .-+
T Consensus 251 K~vLVTGagGSiGsel~~qil~~~-p-~~i~l~~~~---E~~~~~i~~el-~~~~~-~~~----~~~~ig-------dVr 312 (588)
T COG1086 251 KTVLVTGGGGSIGSELCRQILKFN-P-KEIILFSRD---EYKLYLIDMEL-REKFP-ELK----LRFYIG-------DVR 312 (588)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhcC-C-CEEEEecCc---hHHHHHHHHHH-HhhCC-Ccc----eEEEec-------ccc
Confidence 4789999 8999999999998874 2 243333221 22223332111 11222 011 001111 122
Q ss_pred CCCCCC--CCCccccEEEcCC------------------CCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecC
Q 014890 148 NPVNLP--WGDLGIDLVIEGT------------------GVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVN 204 (416)
Q Consensus 148 ~p~~i~--W~~~gvDiVie~T------------------G~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN 204 (416)
|.+.+. ...+.+|+|+.++ -.+-+..-++..++.|+|++|.-..-|.-.|+=|||.-
T Consensus 313 D~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmGaT 389 (588)
T COG1086 313 DRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMGAT 389 (588)
T ss_pred cHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhhHH
Confidence 322211 1234577777663 33445556777888999998765444545688888763
No 431
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.00 E-value=57 Score=30.35 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=25.8
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|+..|-|.| .|.||+.+++.|.+++ .+|+.+..
T Consensus 1 ~~k~vlItG~sg~iG~~la~~L~~~g---~~vi~~~r 34 (256)
T PRK12745 1 MRPVALVTGGRRGIGLGIARALAAAG---FDLAINDR 34 (256)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCC---CEEEEEec
Confidence 334678889 8999999999999875 57777653
No 432
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.93 E-value=52 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
|||+|.|.|.+|..+...|.+..
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g 23 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK 23 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC
Confidence 48999999999999998887654
No 433
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.85 E-value=20 Score=36.92 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=25.0
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+..||.|.|.|-+|..++..|....-+ ++..|++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg--~i~lvD~ 167 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVG--TLGIVDH 167 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeC
Confidence 356899999999999999998765422 3444544
No 434
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=35.77 E-value=2e+02 Score=29.32 Aligned_cols=29 Identities=24% Similarity=0.146 Sum_probs=22.3
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
-+|.|+|- |.||..++..+.... ..++.+
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~G---~~vi~~ 220 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAGG---GNPVAV 220 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcC---CeEEEE
Confidence 48999995 999999988777664 565555
No 435
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.76 E-value=36 Score=36.52 Aligned_cols=25 Identities=24% Similarity=0.151 Sum_probs=22.1
Q ss_pred ccceeEEEEccChhHHHHHHHHHhC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGR 90 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~ 90 (416)
.|+.+|+|.|.|..|-..+|+|.+.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHC
Confidence 3567999999999999999999875
No 436
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=35.63 E-value=60 Score=29.59 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|.|.| .|.||+.+++.+.+++ .+|+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g---~~v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADG---AKVVIYDS 37 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CEEEEEeC
Confidence 5799999 8999999999999875 56766654
No 437
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.50 E-value=1.4e+02 Score=30.25 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=52.1
Q ss_pred ceeEEEEccCh-hHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEec
Q 014890 68 KLKVAINGFGR-IGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSN 146 (416)
Q Consensus 68 ~ikVaINGfGr-IGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~ 146 (416)
..+|.|.|.|. +|+-++..|..+. -.|...+.- . ..+..
T Consensus 158 Gk~vvVIGrs~~VG~pla~lL~~~g---atVtv~~s~-t-~~l~~----------------------------------- 197 (286)
T PRK14175 158 GKNAVVIGRSHIVGQPVSKLLLQKN---ASVTILHSR-S-KDMAS----------------------------------- 197 (286)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC---CeEEEEeCC-c-hhHHH-----------------------------------
Confidence 36899999887 9999999887764 354334321 0 00000
Q ss_pred cCCCCCCCCCccccEEEcCCCCC--CCHhhHHHHHHcCCCEEEEcCCCCCC-CCeEEeecCccC
Q 014890 147 RNPVNLPWGDLGIDLVIEGTGVF--VDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADA 207 (416)
Q Consensus 147 ~~p~~i~W~~~gvDiVie~TG~f--~s~~~a~~hl~aGAkkVIIsapskd~-~ptvV~gVN~~~ 207 (416)
.-...|+||-++|.- ++. .+++-|+ |||+-....+ .--++-.|+++.
T Consensus 198 --------~~~~ADIVIsAvg~p~~i~~----~~vk~ga--vVIDvGi~~~~~gkl~GDvd~~~ 247 (286)
T PRK14175 198 --------YLKDADVIVSAVGKPGLVTK----DVVKEGA--VIIDVGNTPDENGKLKGDVDYDA 247 (286)
T ss_pred --------HHhhCCEEEECCCCCcccCH----HHcCCCc--EEEEcCCCcCCCCCeecCccHHH
Confidence 012668999998874 443 3567787 9997765321 113555666554
No 438
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=35.23 E-value=46 Score=28.73 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=27.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-||-|.|-|.|+.+++|.+.+.. ++.|+||.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~G---i~tv~v~s 33 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELG---IETVAVNS 33 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTT---SEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhC---CcceeccC
Confidence 48999999999999999999986 89999996
No 439
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=35.22 E-value=56 Score=30.59 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=24.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|+|.|.| .|.||+.+++.+.+++ .+|+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G---~~V~~~~ 31 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQG---HKVIATG 31 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCC---CEEEEEE
Confidence 4788999 8999999999998765 5766654
No 440
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=35.13 E-value=3.5e+02 Score=24.65 Aligned_cols=106 Identities=25% Similarity=0.369 Sum_probs=64.0
Q ss_pred EEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEeccCCCC
Q 014890 73 ING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVN 151 (416)
Q Consensus 73 ING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~~p~~ 151 (416)
|-| =|.|||.+...+.++-..+++|.|+-.- .. -.+.|||---..|. ..++.+.++=+
T Consensus 5 IDGQGGGiG~~iv~~lr~~~~~~~eI~AlGTN-a~-AT~~MlKaGA~~gA-------TGENaIv~n~~------------ 63 (131)
T PF12953_consen 5 IDGQGGGIGKQIVEKLRKELPEEVEIIALGTN-AI-ATSAMLKAGANEGA-------TGENAIVVNAR------------ 63 (131)
T ss_pred EeCCCChhHHHHHHHHHHhCCCCcEEEEEehh-HH-HHHHHHHcCCCCcc-------cccchheeccC------------
Confidence 456 6999999999998764234999998641 11 22346652222221 34455554422
Q ss_pred CCCCCccccEEEc--------CCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCC
Q 014890 152 LPWGDLGIDLVIE--------GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY 208 (416)
Q Consensus 152 i~W~~~gvDiVie--------~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y 208 (416)
.+|+++- +--..++..-|..-.+.-|+|++| |-. ..-.++.|+...-+
T Consensus 64 ------~aDiIvGpigIv~a~smlGEiTp~mA~AI~~S~A~KiLi--Pl~-~~~~~ivG~~~~pl 119 (131)
T PF12953_consen 64 ------KADIIVGPIGIVIANSMLGEITPAMAEAIAQSPAKKILI--PLN-RCNIEIVGVENEPL 119 (131)
T ss_pred ------CCCEEECcHHHhccCcccccccHHHHHHHhcCCCCEEEE--eec-CCCCEEECCCCCCH
Confidence 3455553 344566777788888889999998 432 23467778765543
No 441
>PRK05586 biotin carboxylase; Validated
Probab=35.04 E-value=48 Score=34.81 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=27.3
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.-||+|.|-|.+|+.+++++.+.+ +++|++-
T Consensus 2 ~kkvli~g~G~~~~~~~~aa~~lG---~~~v~v~ 32 (447)
T PRK05586 2 FKKILIANRGEIAVRIIRACREMG---IETVAVY 32 (447)
T ss_pred cceEEEECCcHHHHHHHHHHHHcC---CcEEEEc
Confidence 359999999999999999998875 8888884
No 442
>PRK12320 hypothetical protein; Provisional
Probab=34.77 E-value=50 Score=37.47 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.| .|.||+.+++.|.+++ .+|+++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ldr 32 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIAQ 32 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEeC
Confidence 3899999 8999999999999875 68887764
No 443
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=34.46 E-value=55 Score=31.92 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=23.9
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|.|-|.+|..+++.+.... ...|+++..
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g--~~~v~~~~~ 200 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALT--PATVIAVDR 200 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC--CCcEEEEeC
Confidence 47999998889999988877653 156766653
No 444
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=34.29 E-value=40 Score=34.47 Aligned_cols=98 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec--CCChhHHhhhhccc-cccccCCCceee--e--cCCeEEECCEEEE
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND--TGGVKQASHLLKYD-STLGIFEADVKP--V--GTDGISVDGKVIQ 142 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd--~~~~~~~a~LlkyD-S~~G~f~~~v~~--~--~~~~i~v~G~~I~ 142 (416)
||.|.|.|-+|-.+++.|...+-+.+. |=| ..+...+..-+-|. ..-|+.+.++-. . -+..+.+ .
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~It---IvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V-----~ 72 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIH---IIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKI-----V 72 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEE---EEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeE-----E
Confidence 689999999999999988765422233 333 34455544333222 223554332210 0 0122222 2
Q ss_pred EEecc--CCC-CCCCCCccccEEEcCCCCCCCHhhHH
Q 014890 143 VVSNR--NPV-NLPWGDLGIDLVIEGTGVFVDREGAG 176 (416)
Q Consensus 143 v~~~~--~p~-~i~W~~~gvDiVie~TG~f~s~~~a~ 176 (416)
....+ +.. +.+| ..+.|+||.|...+..+.+.-
T Consensus 73 ~~~~~i~~~~~~~~f-~~~~DvVv~a~Dn~~ar~~in 108 (312)
T cd01489 73 AYHANIKDPDFNVEF-FKQFDLVFNALDNLAARRHVN 108 (312)
T ss_pred EEeccCCCccchHHH-HhcCCEEEECCCCHHHHHHHH
Confidence 22111 100 1112 137899999998876655444
No 445
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.25 E-value=1.6e+02 Score=21.43 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=35.9
Q ss_pred ccCCCChHHHHHHHcccccCCeeeEEEeeCc----ccceEEEEEEEEccCCCHHHHHHHHHh
Q 014890 287 VPTSTGAAKAVALVLPALKGKLNGIALRVPT----PNVSVVDLVVQVSKKTFAEEVNAAFRE 344 (416)
Q Consensus 287 IPt~tGaakav~kVlPeL~gkl~g~avRVPt----~~vs~vdl~v~l~k~vs~eeV~~a~~~ 344 (416)
+|...|.-..+..++-+.+..|..+..+-+- .....+.+++++......+++.+.|++
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4566677777888888888888777665432 344556666666432334455555554
No 446
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=34.23 E-value=50 Score=34.96 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.1
Q ss_pred ccceeEEEEccChhHHHHHHHHHhCC
Q 014890 66 QAKLKVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 66 ~m~ikVaINGfGrIGR~vlr~l~~~~ 91 (416)
..+.+|||.|||-.|+.++.-+...+
T Consensus 50 k~tl~IaIIGfGnmGqflAetli~aG 75 (480)
T KOG2380|consen 50 KATLVIAIIGFGNMGQFLAETLIDAG 75 (480)
T ss_pred ccceEEEEEecCcHHHHHHHHHHhcC
Confidence 34689999999999999998887664
No 447
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=34.20 E-value=99 Score=31.83 Aligned_cols=59 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred cEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCCCCCeEEeecCcc-CCCCCCCeEecCCcch
Q 014890 160 DLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-AYKPDEPIISNASCTT 222 (416)
Q Consensus 160 DiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~-~y~~~~~IISnaSCTT 222 (416)
|++|...-.-...+-.+.|++-|+ +|+++.-..|+.+.|--+|.= .+++ ++++.++-.|
T Consensus 232 ~i~v~vAs~~~g~~I~pq~lkpg~--~ivD~g~P~dvd~~vk~~~~V~Ii~G--GlV~~s~~it 291 (351)
T COG5322 232 DILVWVASMPKGVEIFPQHLKPGC--LIVDGGYPKDVDTSVKNVGGVRIIPG--GLVEHSLDIT 291 (351)
T ss_pred ceEEEEeecCCCceechhhccCCe--EEEcCCcCcccccccccCCCeEEecC--ccccCccccc
Confidence 444444333344455689999999 999987644566777766633 3332 5666655444
No 448
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=34.07 E-value=36 Score=33.68 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=21.7
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
|||-|.| +|- ||.+++.|.+++ .+|++-
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g---~~v~~s 29 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQG---IEILVT 29 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCC---CeEEEE
Confidence 4788888 898 999999998764 666543
No 449
>PLN02583 cinnamoyl-CoA reductase
Probab=34.01 E-value=58 Score=31.82 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.5
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+|.|-| .|.||+.+++.|+++. .+|+++..
T Consensus 8 ~vlVTGatG~IG~~lv~~Ll~~G---~~V~~~~R 38 (297)
T PLN02583 8 SVCVMDASGYVGFWLVKRLLSRG---YTVHAAVQ 38 (297)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC---CEEEEEEc
Confidence 689999 8999999999999875 68877653
No 450
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=33.98 E-value=53 Score=32.56 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCC
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~ 91 (416)
.||-|-| +|-||+.+++.|.++.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g 25 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINET 25 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcC
Confidence 4899999 8999999999999874
No 451
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.97 E-value=48 Score=35.59 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=47.6
Q ss_pred CCCCCCHh------hHHHHHHcCCCEEEEcCCCCCCCCeEEeecCccCCCCCCCeEecCCcchhhhHHHHHHHHHHhhhh
Q 014890 166 TGVFVDRE------GAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239 (416)
Q Consensus 166 TG~f~s~~------~a~~hl~aGAkkVIIsapskd~~ptvV~gVN~~~y~~~~~IISnaSCTTn~Lap~lkvL~~~f~~~ 239 (416)
-|...|+. .++.-.++|+|-+++++- |-..|..+.+= . ..-|+-+|+-|.+--
T Consensus 167 RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gq------------dv~aYG~D~~~----~--~~~l~~Ll~~l~~I~--- 225 (437)
T COG0621 167 RGKERSRPPEDILKEVKRLVAQGVKEIVLTGQ------------DVNAYGKDLGG----G--KPNLADLLRELSKIP--- 225 (437)
T ss_pred CCCccCCCHHHHHHHHHHHHHCCCeEEEEEEE------------ehhhccccCCC----C--ccCHHHHHHHHhcCC---
Confidence 45555553 566777889998888654 22344332110 0 345788888888855
Q ss_pred ccccccccccceeEEEEEeecccccchhhhc
Q 014890 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLD 270 (416)
Q Consensus 240 ~~~~~~~~~~GI~~~~mTTiHa~T~~Q~~lD 270 (416)
||.+..+++.|+.--+-.+++
T Consensus 226 ----------G~~riR~~~~~P~~~~d~lI~ 246 (437)
T COG0621 226 ----------GIERIRFGSSHPLEFTDDLIE 246 (437)
T ss_pred ----------CceEEEEecCCchhcCHHHHH
Confidence 999999999998544444444
No 452
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.86 E-value=1.9e+02 Score=30.12 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=23.6
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
||.|.|.|..|+..++.|..+. .+|. +.|
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G---~~V~-~~D 30 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG---WEVV-VSD 30 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC---CEEE-EEC
Confidence 7999999999999999888775 5644 455
No 453
>PRK08219 short chain dehydrogenase; Provisional
Probab=33.76 E-value=57 Score=29.55 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=24.3
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+.++.|.| .|.||+.+++.|.++ .+|+++..
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~----~~V~~~~r 34 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT----HTLLLGGR 34 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh----CCEEEEeC
Confidence 35799999 899999999999875 35666643
No 454
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.37 E-value=60 Score=29.85 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=26.1
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
..+|.|.| .|.||+.+++.+.++. .+|+++..
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g---~~V~~~~r 38 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADG---AEVIVVDI 38 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCC---CEEEEEeC
Confidence 35799999 8999999999999875 57777653
No 455
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=33.25 E-value=61 Score=33.01 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.0
Q ss_pred eeEEEEcc-ChhHHHHHHHHHhCC
Q 014890 69 LKVAINGF-GRIGRNFLRCWHGRK 91 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~~~ 91 (416)
|||+|.|. |.||..++-.+..++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~ 24 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNP 24 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 59999997 999999998887654
No 456
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=33.00 E-value=49 Score=35.30 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.||.|.|.|-+|+.+++.|.+.+- -.|.-.|-.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT 211 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGV--KKITIANRT 211 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence 579999999999999999998752 355556763
No 457
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=32.99 E-value=1.4e+02 Score=29.20 Aligned_cols=29 Identities=28% Similarity=0.156 Sum_probs=22.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaI 100 (416)
-+|.|+|-|.+|..+++.+.... . .|+++
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G---~~~v~~~ 194 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVG---ARHVVIT 194 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 47899999999999888776654 4 45556
No 458
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=32.93 E-value=49 Score=31.29 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.0
Q ss_pred EEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 71 VAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 71 VaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|-|-| .|.||+.+++.|.++. .+|++++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEeC
Confidence 35778 8999999999998864 78888875
No 459
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=32.91 E-value=77 Score=35.01 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.7
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+..||||.|-|..||.+++++.+.. ++++++..
T Consensus 21 ~~k~IgIIGgGqlg~mla~aA~~lG---~~Vi~ld~ 53 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQAASQMG---IKVKVLDP 53 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3569999999999999999988875 78877743
No 460
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=32.90 E-value=63 Score=32.31 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=23.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaIN 101 (416)
-+|.|+|.|.+|..+++.+.... .. |+++.
T Consensus 184 ~~vLI~g~g~vG~a~i~lak~~G---~~~Vi~~~ 214 (363)
T cd08279 184 DTVAVIGCGGVGLNAIQGARIAG---ASRIIAVD 214 (363)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCcEEEEc
Confidence 37999999999999988887664 54 65654
No 461
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=32.84 E-value=41 Score=39.74 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=78.4
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCC---CCceEEEEe-cCCChhHHhhhhccc-cccccCCCceee----ecCCeEEECC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKD---SPLEVVAIN-DTGGVKQASHLLKYD-STLGIFEADVKP----VGTDGISVDG 138 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~---~~~~vVaIN-d~~~~~~~a~LlkyD-S~~G~f~~~v~~----~~~~~i~v~G 138 (416)
..||.|+|.|.+|-.+++.|...+- +.=.+..+. |..+...+-.-|-|. ..-|+.+..+-. .-+..+.+.-
T Consensus 419 ~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~ 498 (1008)
T TIGR01408 419 NLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDA 498 (1008)
T ss_pred hCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 4699999999999999998875431 000333343 233443343322222 123544332110 0122222221
Q ss_pred EEEEEEeccCCCCC-C---CCCccccEEEcCCCCCCCHhhHH-HHHHcCCCEEEEcCCC---CCCCCeEEeecCccCCCC
Q 014890 139 KVIQVVSNRNPVNL-P---WGDLGIDLVIEGTGVFVDREGAG-KHIQAGAKKVLITAPG---KGDIPTYVVGVNADAYKP 210 (416)
Q Consensus 139 ~~I~v~~~~~p~~i-~---W~~~gvDiVie~TG~f~s~~~a~-~hl~aGAkkVIIsaps---kd~~ptvV~gVN~~~y~~ 210 (416)
..-++..+ .+++ + | .+.|+|++|...+-++.+.. .-...+. -+|.+.. ++.+-+++++.- +.|..
T Consensus 499 ~~~~v~~~--~e~i~~~~f~--~~~dvVi~alDn~~aR~~vn~~c~~~~i--Pli~~gt~G~~G~v~v~ip~~t-e~y~~ 571 (1008)
T TIGR01408 499 HQNRVGPE--TETIFNDEFY--EKLDVVINALDNVEARRYVDSRCLAFLK--PLLESGTLGTKGNTQVVVPHLT-ESYGS 571 (1008)
T ss_pred EEeecChh--hhhhhhHHHh--hCCCEEEECCCCHHHHHHHHHHHHHcCC--CEEEEeccCceeeEEEEeCCCc-CCCCC
Confidence 11112110 0111 1 3 37899999999876665443 2334444 4554443 344567777753 22321
Q ss_pred --CCCeEecCCcc--------hhhhHHHHHHHHHHh
Q 014890 211 --DEPIISNASCT--------TNCLAPFVKVLDQKF 236 (416)
Q Consensus 211 --~~~IISnaSCT--------Tn~Lap~lkvL~~~f 236 (416)
+..=.+.|.|| -.|+.=+-...+..|
T Consensus 572 ~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F 607 (1008)
T TIGR01408 572 SRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLF 607 (1008)
T ss_pred CCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHH
Confidence 11123455665 456665555555554
No 462
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.76 E-value=1e+02 Score=28.55 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=25.9
Q ss_pred ceeEEEEccChh-HHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRI-GRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrI-GR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..||.|.|.|.+ |+.+++.|.++. ..|..+|..
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g---~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRN---ATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCC---CEEEEEECC
Confidence 368999999985 998999888764 467677753
No 463
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=32.70 E-value=1.1e+02 Score=30.17 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=52.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
=+|.|+| .|.+|..+++.+.... ..++++... +...++-+ +|. ...+. .... .. .+
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G---~~v~~~~~~---~~~~~~~~----~g~-~~v~~--------~~~~--~~--~~ 212 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAG---YKVITTASP---KNFDLVKS----LGA-DAVFD--------YHDP--DV--VE 212 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcC---CeEEEEECc---ccHHHHHh----cCC-CEEEE--------CCCc--hH--HH
Confidence 3789999 6999999998888765 566665422 33323321 221 10111 0000 00 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHc--CCCEEEE
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA--GAKKVLI 188 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~a--GAkkVII 188 (416)
....+. ..++|+|||++|.-.....+..+++. |.+-|.+
T Consensus 213 ~l~~~~--~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~ 253 (339)
T cd08249 213 DIRAAT--GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSL 253 (339)
T ss_pred HHHHhc--CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEe
Confidence 001111 24789999999974455667788887 6644444
No 464
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=32.70 E-value=3.3e+02 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.7
Q ss_pred eEEEEccChhHHHHHHHHHhCC
Q 014890 70 KVAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~ 91 (416)
+|.|.|.|.+|..++..+....
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~G 198 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLKN 198 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC
Confidence 6888889999999988887764
No 465
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=32.58 E-value=66 Score=29.83 Aligned_cols=31 Identities=26% Similarity=0.115 Sum_probs=24.7
Q ss_pred cceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEE
Q 014890 67 AKLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 67 m~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
|+.+|.|.| .|.||+.+++.+.++. .+|+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARG---WSVGIN 32 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCC---CEEEEE
Confidence 455899999 8999999999998775 566543
No 466
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=32.45 E-value=59 Score=26.11 Aligned_cols=48 Identities=19% Similarity=0.209 Sum_probs=33.9
Q ss_pred EEEEEEEccCCCHHHHHHHHHhcccc--cCCCcccccCCC-eeeeccCCCC
Q 014890 323 VDLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP-LVSVDFRCSD 370 (416)
Q Consensus 323 vdl~v~l~k~vs~eeV~~a~~~aa~~--~lkgil~~~~~p-~VS~Df~g~~ 370 (416)
..++++.+++.+.+.+.+.|.+.+.+ ..||++.+.++| ..-.+..++.
T Consensus 2 ~s~~~~~~~p~~~~~l~~~l~~~~~~vlR~KG~v~~~~~~~~~~~q~v~~~ 52 (94)
T PF07683_consen 2 SSVTFEFDRPFDPERLEAWLQELPGDVLRAKGIVWVADGPRRLVFQGVGGR 52 (94)
T ss_dssp EEEEEEESS-B-HHHHHHHHHHTTTTEEEEEEEE-BTT-SEEEEEEEETTE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhCCCCEEEEEEEEEeCCcCeEEEEEeeCCE
Confidence 35788999999999999999996554 479999999874 4456666653
No 467
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=32.34 E-value=74 Score=25.28 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=37.8
Q ss_pred EEEEEEccCCCHHHHHHHHHhcccc--cCCCcccccCCC--eeeeccCCCCcc
Q 014890 324 DLVVQVSKKTFAEEVNAAFRESADN--ELKGILSVCDEP--LVSVDFRCSDVS 372 (416)
Q Consensus 324 dl~v~l~k~vs~eeV~~a~~~aa~~--~lkgil~~~~~p--~VS~Df~g~~~S 372 (416)
.++++...+.+.+++.+.+++-+.+ .+||++...+.+ .+-.++.++.++
T Consensus 3 s~~~~~~~~~~~~~l~~~l~~l~~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~ 55 (92)
T smart00833 3 SFVYRARRPFHPQRLLAALDELPEGVLRAKGFFWLASRPDLPGVLSGAGGRLR 55 (92)
T ss_pred EEEEecCCCCCHHHHHHHHHhccCCeEEEEEEEEeCCCCCeEEEEEccCCeeE
Confidence 5677888999999999999887644 579999998775 456677776433
No 468
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=32.31 E-value=1.1e+02 Score=28.96 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=49.6
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEecCCChhHHhhhhccccccccCCCceeeecCCeEEECCEEEEEEecc
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR 147 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd~~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G~~I~v~~~~ 147 (416)
=+|.|+| .|.+|+.+++.+..+. .+|+++... .+...++.+ +|. +.+ +..+. .+ .+
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~g---~~v~~~~~~--~~~~~~~~~----~g~----------~~~-~~~~~-~~--~~ 200 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKALG---ATVTATTRS--PERAALLKE----LGA----------DEV-VIDDG-AI--AE 200 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHcC---CEEEEEeCC--HHHHHHHHh----cCC----------cEE-EecCc-cH--HH
Confidence 3789999 5999999998887765 677666543 233333322 121 011 11000 00 00
Q ss_pred CCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCC
Q 014890 148 NPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184 (416)
Q Consensus 148 ~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAk 184 (416)
.-. .+ ..++|++++|+|.. ..+.+..++..+.+
T Consensus 201 ~i~--~~-~~~~d~vl~~~~~~-~~~~~~~~l~~~g~ 233 (320)
T cd08243 201 QLR--AA-PGGFDKVLELVGTA-TLKDSLRHLRPGGI 233 (320)
T ss_pred HHH--Hh-CCCceEEEECCChH-HHHHHHHHhccCCE
Confidence 000 12 34799999999974 34555677776663
No 469
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.22 E-value=56 Score=34.19 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=23.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|||.|.|+|+.|+.++|.|. +. .+|+ +.|
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G---~~V~-~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KF---GGVD-IFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CC---CeEE-EEc
Confidence 47999999999999999988 65 4544 444
No 470
>PRK10537 voltage-gated potassium channel; Provisional
Probab=32.01 E-value=59 Score=34.20 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=24.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|-|.|+|++|+.+++.|.+++ .+++.|-
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g---~~vvVId 270 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRG---QAVTVIV 270 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCC---CCEEEEE
Confidence 46999999999999999988764 5666664
No 471
>PRK06046 alanine dehydrogenase; Validated
Probab=31.93 E-value=89 Score=31.62 Aligned_cols=34 Identities=29% Similarity=0.228 Sum_probs=27.8
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
..+|||.|.|.+|+..++++.... +++.|.|=|.
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~--~i~~v~v~~r 162 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVF--DLEEVRVYDR 162 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC--CceEEEEECC
Confidence 358999999999999999887542 3888888775
No 472
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.89 E-value=61 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
-.+||.|.|.+|-.++.-...+..+ .|++|
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAs--rIIgv 223 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGAS--RIIGV 223 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcc--cEEEE
Confidence 4799999999998887766655433 55555
No 473
>PRK12827 short chain dehydrogenase; Provisional
Probab=31.67 E-value=71 Score=29.31 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=25.4
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+++.|.| .|.||+.+++.|.+++ .+++.+.
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g---~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADG---ADVIVLD 37 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC---CeEEEEc
Confidence 35899999 8999999999999875 5666654
No 474
>PLN02858 fructose-bisphosphate aldolase
Probab=31.40 E-value=56 Score=39.87 Aligned_cols=33 Identities=12% Similarity=0.228 Sum_probs=27.5
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|..|||+.|+|.+|..+++.|.... ++|.+.|-
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G---~~V~v~dr 355 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSN---FSVCGYDV 355 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCC---CEEEEEeC
Confidence 3468999999999999999998764 78877764
No 475
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=31.31 E-value=64 Score=31.99 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.5
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
+|-|-| .|-||+.+++.|.++. .+|+++..
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G---~~V~~~~r 32 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKG---YEVHGLIR 32 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCC---CEEEEEec
Confidence 688999 8999999999999875 68887754
No 476
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=31.30 E-value=3e+02 Score=26.27 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=24.4
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|+| -|.+|..+++.+.... .+++++..
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~g---~~v~~~~~ 175 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAAG---ATVVGAAG 175 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC---CEEEEEeC
Confidence 3699999 7999999988887765 67766643
No 477
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=31.21 E-value=74 Score=32.25 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=23.1
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaI 100 (416)
=+|.|+|-|.+|..+++.+..+. . .|+++
T Consensus 205 ~~VlV~g~g~vG~~ai~lA~~~G---~~~vi~~ 234 (384)
T cd08265 205 AYVVVYGAGPIGLAAIALAKAAG---ASKVIAF 234 (384)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 37899999999999988887765 4 46555
No 478
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=31.11 E-value=66 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=23.0
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~ 103 (416)
.+|+|.|||.-|+.....|.+.. ++|+.-+..
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG---~~V~Vglr~ 36 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSG---VNVIVGLRE 36 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC----EEEEEE-T
T ss_pred CEEEEECCChHHHHHHHHHHhCC---CCEEEEecC
Confidence 48999999999999988887764 787655543
No 479
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=30.93 E-value=2e+02 Score=28.08 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=22.2
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCc-eEEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~-~vVaI 100 (416)
-+|.|.|.|.+|..+++.+.... . .++++
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g---~~~v~~~ 198 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLG---AARIIAV 198 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCEEEEE
Confidence 47899999999999988777654 3 56666
No 480
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=30.92 E-value=2.6e+02 Score=30.78 Aligned_cols=98 Identities=20% Similarity=0.347 Sum_probs=57.0
Q ss_pred ceeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC---------CChhHHhhhhccccccccCCCceeeecCCeEEECC
Q 014890 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT---------GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG 138 (416)
Q Consensus 68 ~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~---------~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G 138 (416)
-.|+.|-|||-+|....+-+.+.. =.+|+|.|. .+++.+..+ ....+.+++ +++....-.|
T Consensus 251 gkr~~i~G~Gnv~~~aa~~l~~~G---~kvvavsD~~G~l~np~Gid~~eL~~~---~~~k~~i~~----f~~~~~~~~~ 320 (514)
T KOG2250|consen 251 GKRVVIQGFGNVGGHAAKKLSEKG---AKVVAVSDSKGVLINPDGIDIEELLDL---ADEKKTIKS----FDGAKLSYEG 320 (514)
T ss_pred ceEEEEeCCCchHHHHHHHHHhcC---CEEEEEEcCceeEECCCCCCHHHHHHH---HHhhccccc----cccccccCcc
Confidence 468999999999999988888654 356666652 245544433 222333221 1222222222
Q ss_pred EEEEEEeccCCCCCCCC-CccccEEEcCC-CCCCCHhhHHHHHHcCC
Q 014890 139 KVIQVVSNRNPVNLPWG-DLGIDLVIEGT-GVFVDREGAGKHIQAGA 183 (416)
Q Consensus 139 ~~I~v~~~~~p~~i~W~-~~gvDiVie~T-G~f~s~~~a~~hl~aGA 183 (416)
-.+ ..| ||. ...+||.+=|. ...++.+.|....+.|+
T Consensus 321 ~~~-----~~~---~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~ 359 (514)
T KOG2250|consen 321 YIA-----GLP---PWTLVEKCDILVPCATQNEITGENAKALVAKGC 359 (514)
T ss_pred ccc-----cCc---chhhHhhCcEEeecCccCcccHhhHHHHHhcCC
Confidence 000 112 232 24789998884 56678888888777777
No 481
>PRK06924 short chain dehydrogenase; Provisional
Probab=30.90 E-value=74 Score=29.52 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=24.1
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
+|-|.| .|.||+.+++.+.+++ .+|+.+.
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g---~~V~~~~ 32 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKG---THVISIS 32 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcC---CEEEEEe
Confidence 688999 8999999999998875 5666654
No 482
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.86 E-value=2e+02 Score=28.24 Aligned_cols=29 Identities=24% Similarity=0.093 Sum_probs=22.3
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCce-EEEE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLE-VVAI 100 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~-vVaI 100 (416)
-+|.|+|.|.+|..+++.+.... .. ++++
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G---~~~v~~~ 193 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFG---ATKVVVT 193 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CcEEEEE
Confidence 48899999999999988877654 45 5445
No 483
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=30.74 E-value=66 Score=30.73 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=23.9
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
||.|.| .|-||+.+++.|.++. .+|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g---~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG---HEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC---CeEEEEe
Confidence 578999 8999999999998875 5776664
No 484
>PRK05884 short chain dehydrogenase; Provisional
Probab=30.04 E-value=78 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=23.8
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|+-|-| .|.||+.+++.+.++. .+|+.+.
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g---~~v~~~~ 31 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDG---HKVTLVG 31 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCC---CEEEEEe
Confidence 789999 7999999999998764 5666654
No 485
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=29.86 E-value=71 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=24.8
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
|||+|.|.|.+|-.+.-++.+.. ..++|+++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD 33 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVD 33 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEE
Confidence 68999999999988877666542 237888874
No 486
>PLN02650 dihydroflavonol-4-reductase
Probab=29.80 E-value=67 Score=31.94 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=25.0
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+|-|-| .|.||+.+++.|.+++ .+|+++-
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G---~~V~~~~ 36 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERG---YTVRATV 36 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCC---CEEEEEE
Confidence 4799999 8999999999999875 5776653
No 487
>PRK04435 hypothetical protein; Provisional
Probab=29.70 E-value=1.6e+02 Score=26.62 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=45.7
Q ss_pred Hhhhcccccc-ccCCCChHHHHHHHcccccCCeeeEEEeeCcccceEEEEEEEEccCCCHHHHHHHHHhcccccCCCcc
Q 014890 277 RRARAAALNI-VPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGIL 354 (416)
Q Consensus 277 rr~Raaa~NI-IPt~tGaakav~kVlPeL~gkl~g~avRVPt~~vs~vdl~v~l~k~vs~eeV~~a~~~aa~~~lkgil 354 (416)
-++|.+...+ .+...|.-..+..+|-+.+..+..+..++|......+.+++++.... +++++++.+-. .++||.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~--~~L~~Li~~L~--~i~gV~ 139 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME--GDIDELLEKLR--NLDGVE 139 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH--HHHHHHHHHHH--cCCCcE
Confidence 3456666666 55567776777788888888888887788775544556666665432 24555444321 245554
No 488
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=29.49 E-value=70 Score=33.55 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=28.6
Q ss_pred cceeEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 67 m~ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
|+-||+|.|-|.++..+++++.+.. +++|++..
T Consensus 1 ~~kkili~g~g~~~~~~~~aa~~lG---~~vv~~~~ 33 (449)
T TIGR00514 1 MLDKILIANRGEIALRILRACKELG---IKTVAVHS 33 (449)
T ss_pred CcceEEEeCCCHHHHHHHHHHHHcC---CeEEEEEC
Confidence 3459999999999999999999875 89999853
No 489
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=29.42 E-value=61 Score=32.56 Aligned_cols=146 Identities=15% Similarity=0.181 Sum_probs=73.6
Q ss_pred eeEEEEccChhHHHHHHHHHhCCCCCceEEEEecC--CChhHHhhhhccccccccCCCceeeecCCeEEECC------EE
Q 014890 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT--GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG------KV 140 (416)
Q Consensus 69 ikVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd~--~~~~~~a~LlkyDS~~G~f~~~v~~~~~~~i~v~G------~~ 140 (416)
-+|.|.|-|-+|--++.+|....-+.+.++=-.|+ .+.+-=.|-+ -++.|+-+-++ ..+....||= ..
T Consensus 31 ~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~--~~~iGk~Kv~v--m~eri~~InP~c~V~~~~ 106 (263)
T COG1179 31 AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHAL--LGDIGKPKVEV--MKERIKQINPECEVTAIN 106 (263)
T ss_pred CcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhh--hhhcccHHHHH--HHHHHHhhCCCceEeehH
Confidence 47999999999999999998654333444222221 2222222333 23467654322 1222222222 11
Q ss_pred EEEEeccCCCCCCCCCccccEEEcCCCCCCCHhhHHHHHHcCCCEEEEcCCCCC-CCCeEEeecCccCCCCCCCeEecCC
Q 014890 141 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDEPIISNAS 219 (416)
Q Consensus 141 I~v~~~~~p~~i~W~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkVIIsapskd-~~ptvV~gVN~~~y~~~~~IISnaS 219 (416)
..+. +.+.+++- ..+.||||||.-....+-..-.+...--.+||-+..... -+||-+ ..+.
T Consensus 107 ~f~t-~en~~~~~--~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri---------------~v~D 168 (263)
T COG1179 107 DFIT-EENLEDLL--SKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRI---------------QVAD 168 (263)
T ss_pred hhhC-HhHHHHHh--cCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceE---------------Eeee
Confidence 1111 12222332 237899999998887775444433333335555444321 255443 1112
Q ss_pred cchhhhHHHHHHHHHHh
Q 014890 220 CTTNCLAPFVKVLDQKF 236 (416)
Q Consensus 220 CTTn~Lap~lkvL~~~f 236 (416)
=+.+---|+++.+.++.
T Consensus 169 iskT~~DPLa~~vR~~L 185 (263)
T COG1179 169 ISKTIQDPLAAKVRRKL 185 (263)
T ss_pred chhhccCcHHHHHHHHH
Confidence 22223357888877665
No 490
>PRK05086 malate dehydrogenase; Provisional
Probab=29.00 E-value=83 Score=31.80 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.0
Q ss_pred eeEEEEcc-ChhHHHHHHHHHh
Q 014890 69 LKVAINGF-GRIGRNFLRCWHG 89 (416)
Q Consensus 69 ikVaINGf-GrIGR~vlr~l~~ 89 (416)
+||+|.|. |+||+.++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 58999996 9999999987754
No 491
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.93 E-value=83 Score=28.99 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=25.2
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+|.|.| .|.||+.+++.+.+++ .+|+++..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G---~~V~~~~r 37 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEG---ARVVVTDR 37 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCC---CEEEEEeC
Confidence 3789999 8999999999999875 57766643
No 492
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=28.83 E-value=73 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=27.4
Q ss_pred ceeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 68 KLKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 68 ~ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
.+||.|-| .|-||+.+++.|+++. ..+|+++..
T Consensus 315 ~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r 348 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDI 348 (660)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeC
Confidence 36899999 8999999999998752 278888864
No 493
>PRK07578 short chain dehydrogenase; Provisional
Probab=28.55 E-value=1.2e+02 Score=27.35 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=22.1
Q ss_pred eEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 70 KVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 70 kVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
++-|-| .|.||+.+++.+.++ .+|+.+.
T Consensus 2 ~vlItGas~giG~~la~~l~~~----~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR----HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc----CcEEEEe
Confidence 688999 899999999998765 3555554
No 494
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.29 E-value=90 Score=28.59 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.1
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEE
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAI 100 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaI 100 (416)
.++-|.| .|.||+.+++.+.++. .+++.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g---~~v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEG---AKVVIA 35 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCC---CEEEEE
Confidence 4789999 8999999999988764 677666
No 495
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=28.26 E-value=2.7e+02 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=23.1
Q ss_pred eEEEEccChhHHH-HHHHHHhCCCCCceEEEEecC
Q 014890 70 KVAINGFGRIGRN-FLRCWHGRKDSPLEVVAINDT 103 (416)
Q Consensus 70 kVaINGfGrIGR~-vlr~l~~~~~~~~~vVaINd~ 103 (416)
+|-+.|.|.+|.. ++|.|.++. .+|. +.|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G---~~v~-~~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRG---YQVS-GSDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCC---CeEE-EECC
Confidence 4778999999998 899888875 5654 4553
No 496
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=27.84 E-value=62 Score=31.35 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=23.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
-+|.|.| .|.+|+.+++.+.... .+++++-.
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~G---~~v~~~~~ 173 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKALG---AKLIGTVG 173 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHcC---CEEEEEeC
Confidence 4789997 8999999988777664 67766643
No 497
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=27.58 E-value=3.1e+02 Score=25.58 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=23.9
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
-+|.|+| .|.+|+.+++.+.... .+++++.
T Consensus 138 ~~vlI~g~~g~~g~~~~~~a~~~g---~~v~~~~ 168 (320)
T cd05286 138 DTVLVHAAAGGVGLLLTQWAKALG---ATVIGTV 168 (320)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcC---CEEEEEc
Confidence 3789999 7999999988877664 6776664
No 498
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=27.42 E-value=99 Score=27.62 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=24.8
Q ss_pred eEEEEccChhHHHHHHHHHhCCCCCceEEEEec
Q 014890 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102 (416)
Q Consensus 70 kVaINGfGrIGR~vlr~l~~~~~~~~~vVaINd 102 (416)
++.|.|.|..|+.+++.+.++ .+++++.=|
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~---g~~vvgfid 30 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS---GWEIVGFLD 30 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCEEEEEEc
Confidence 478999999999999998754 388888765
No 499
>PRK07577 short chain dehydrogenase; Provisional
Probab=27.34 E-value=92 Score=28.50 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=24.5
Q ss_pred eeEEEEc-cChhHHHHHHHHHhCCCCCceEEEEe
Q 014890 69 LKVAING-FGRIGRNFLRCWHGRKDSPLEVVAIN 101 (416)
Q Consensus 69 ikVaING-fGrIGR~vlr~l~~~~~~~~~vVaIN 101 (416)
.+|.|.| .|.||+.+++.+.++. .+|+++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G---~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLG---HQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCC---CEEEEEe
Confidence 3688999 8999999999998875 5776664
No 500
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=27.30 E-value=1.3e+02 Score=29.98 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.2
Q ss_pred EEEEccChhHHHHHHHHHhCC
Q 014890 71 VAINGFGRIGRNFLRCWHGRK 91 (416)
Q Consensus 71 VaINGfGrIGR~vlr~l~~~~ 91 (416)
|+|.|.|.||..++-.+...+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~ 21 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKG 21 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcC
Confidence 589999999999998887764
Done!