RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014890
(416 letters)
>gnl|CDD|215572 PLN03096, PLN03096, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 395
Score = 737 bits (1905), Expect = 0.0
Identities = 335/411 (81%), Positives = 363/411 (88%), Gaps = 16/411 (3%)
Query: 6 LSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAA 65
S AK +LQ KGFSEFSGL++S+++ FG++S + ++ SSS G R+
Sbjct: 1 FSAAKPSLQAGSKGFSEFSGLKSSSAVTFGKRSDSL---DFVVFATSAVSSSGGARRAVT 57
Query: 66 QAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEAD 125
+AK+KVAINGFGRIGRNFLRCWHGRKDSPL+VVAINDTGGVKQASHLLKYDSTLG F+AD
Sbjct: 58 EAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDAD 117
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
VKPVG D ISVDGKVI+VVS+RNP+NLPWG+LGIDLVIEGTGVFVDREGAGKHIQAGAKK
Sbjct: 118 VKPVGDDAISVDGKVIKVVSDRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKK 177
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
VLITAPGKGDIPTYVVGVNAD YK +PIISNASCTTNCLAPFVKVLDQKF
Sbjct: 178 VLITAPGKGDIPTYVVGVNADDYKHSDPIISNASCTTNCLAPFVKVLDQKF--------- 228
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLP LK
Sbjct: 229 ----GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLK 284
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKLNGIALRVPTPNVSVVDLVVQV KKTFAEEVNAAFR++A+ ELKGIL+VCDEPLVSVD
Sbjct: 285 GKLNGIALRVPTPNVSVVDLVVQVEKKTFAEEVNAAFRDAAEKELKGILAVCDEPLVSVD 344
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
FRCSDVSST+DSSLT+VMGDDMVKV+AWYDNEWGYSQRVVDLADIVAN WK
Sbjct: 345 FRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLADIVANKWK 395
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 624 bits (1610), Expect = 0.0
Identities = 296/416 (71%), Positives = 334/416 (80%), Gaps = 19/416 (4%)
Query: 4 ATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSD-DFHSVIALQTSALGSSSSGYRK 62
AT + A + +EFSGLR S+ + F + + + F V+A Q + + S+ R
Sbjct: 12 ATTRLPSKASHKRLE-VAEFSGLRASSCVTFAKNAREASFFDVVASQLAPKVAGSTPVRG 70
Query: 63 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 122
AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F
Sbjct: 71 ET-VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTF 129
Query: 123 EADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG 182
+ADVK V + ISVDGK I+VVSNR+P+ LPW +LGID+VIEGTGVFVD GAGKHIQAG
Sbjct: 130 KADVKIVDDETISVDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAG 189
Query: 183 AKKVLITAPGKG-DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQL 240
AKKV+ITAP KG DIPTYVVGVN D Y + I+SNASCTTNCLAPFVKVLD++F
Sbjct: 190 AKKVIITAPAKGADIPTYVVGVNEDDYDHEVANIVSNASCTTNCLAPFVKVLDEEF---- 245
Query: 241 NDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALV 300
GI+KGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV+LV
Sbjct: 246 ---------GIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLV 296
Query: 301 LPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFRESADNELKGILSVCDE 359
LP LKGKLNGIALRVPTPNVSVVDLVV V KK AE+VNAAFR++AD LKGIL+VCD
Sbjct: 297 LPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILAVCDV 356
Query: 360 PLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
PLVSVDFRCSDVSST+D+SLT+VMGDDMVKV+AWYDNEWGYSQRVVDLA +VA W
Sbjct: 357 PLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKW 412
>gnl|CDD|180962 PRK07403, PRK07403, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 337
Score = 531 bits (1369), Expect = 0.0
Identities = 244/350 (69%), Positives = 279/350 (79%), Gaps = 16/350 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
++VAINGFGRIGRNFLRCW GR++S LE+VAINDT + +HLLKYDS LG AD+
Sbjct: 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADIS- 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I+V+GK I+ VS+RNP+NLPW + GIDL+IE TGVFV +EGA KHIQAGAKKVLI
Sbjct: 61 ADENSITVNGKTIKCVSDRNPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI 120
Query: 189 TAPGKG-DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
TAPGKG DI TYVVGVN Y ++ IISNASCTTNCLAP KVL F
Sbjct: 121 TAPGKGEDIGTYVVGVNHHEYDHEDHNIISNASCTTNCLAPIAKVLHDNF---------- 170
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GIIKGTMTTTHSYTGDQR+LDASHRDLRRARAAA+NIVPTSTGAAKAVALV+P LKG
Sbjct: 171 ---GIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKG 227
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KLNGIALRVPTPNVSVVDLVVQV K+T E+VN +++++ LKGIL D PLVS D+
Sbjct: 228 KLNGIALRVPTPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDLPLVSSDY 287
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
R +D SS VD+SLT+VMG DMVKVIAWYDNEWGYSQRVVDLA++VA WK
Sbjct: 288 RGTDASSIVDASLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAELVARKWK 337
>gnl|CDD|233453 TIGR01534, GAPDH-I, glyceraldehyde-3-phosphate dehydrogenase, type
I. This model represents glyceraldehyde-3-phosphate
dehydrogenase (GAPDH), the enzyme responsible for the
interconversion of 1,3-diphosphoglycerate and
glyceraldehyde-3-phosphate, a central step in glycolysis
and gluconeogenesis. Forms exist which utilize NAD (EC
1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In
some species, NAD- and NADP- utilizing forms exist,
generally being responsible for reactions in the
anabolic and catabolic directions respectively. Two PFAM
models cover the two functional domains of this protein;
pfam00044 represents the N-terminal NAD(P)-binding
domain and pfam02800 represents the C-terminal catalytic
domain. An additional form of gap gene is found in gamma
proteobacteria and is responsible for the conversion of
erythrose-4-phosphate (E4P) to 4-phospho-erythronate in
the biosynthesis of pyridoxine. This pathway of
pyridoxine biosynthesis appears to be limited, however,
to a relatively small number of bacterial species
although it is prevalent among the gamma-proteobacteria.
This enzyme is described by TIGR001532. These sequences
generally score between trusted and noise to this GAPDH
model due to the close evolutionary relationship. There
exists the possiblity that some forms of GAPDH may be
bifunctional and act on E4P in species which make
pyridoxine and via hydroxythreonine and lack a separate
E4PDH enzyme (for instance, the GAPDH from Bacillus
stearothermophilus has been shown to posess a limited
E4PD activity as well as a robust GAPDH activity). There
are a great number of sequences in the databases which
score between trusted and noise to this model, nearly
all of them due to fragmentary sequences. It seems that
study of this gene has been carried out in many species
utilizing PCR probes which exclude the extreme ends of
the consenses used to define this model. The noise level
is set relative not to E4PD, but the next closest
outliers, the class II GAPDH's (found in archaea,
TIGR01546) and aspartate semialdehyde dehydrogenase
(ASADH, TIGR01296) both of which have highest-scoring
hits around -225 to the prior model [Energy metabolism,
Glycolysis/gluconeogenesis].
Length = 326
Score = 484 bits (1247), Expect = e-172
Identities = 199/340 (58%), Positives = 238/340 (70%), Gaps = 17/340 (5%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
KV INGFGRIGR LR + + LEVVAIND ++ ++LLKYDS G FE +V
Sbjct: 1 KVGINGFGRIGRLVLRAILEKPGNDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVT-A 59
Query: 130 GTDGISVDGK-VIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
DG+ V+GK VI V S R+P +LPW LG+D+VIE TG F D+E H++AGAKKVLI
Sbjct: 60 DEDGLVVNGKEVISVFSERDPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLI 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP KGD+ T V GVN D Y P E I+SNASCTTNCLAP KVLD+ F
Sbjct: 120 SAPSKGDVKTIVYGVNHDEYDPSERIVSNASCTTNCLAPLAKVLDEAF------------ 167
Query: 249 AGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKL 308
GI+ G MTT HSYT DQ L+D H+DLRRARAAALNI+PTSTGAAKA+ VLP L GKL
Sbjct: 168 -GIVSGLMTTVHSYTNDQNLVDGPHKDLRRARAAALNIIPTSTGAAKAIGKVLPELAGKL 226
Query: 309 NGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRC 368
G+A+RVPTPNVS+VDLVV + K EEVNAA +E+A+ ELKG+L ++ LVS DF
Sbjct: 227 TGMAIRVPTPNVSLVDLVVNLEKDVTVEEVNAALKEAAEGELKGVLGYTEDELVSSDFIG 286
Query: 369 SDVSSTVDSSLTLVMGDD--MVKVIAWYDNEWGYSQRVVD 406
S SS VD++ T V G +VKV+AWYDNEWGYS RVVD
Sbjct: 287 SPYSSIVDATATKVTGLGDSLVKVVAWYDNEWGYSNRVVD 326
>gnl|CDD|223135 COG0057, GapA, Glyceraldehyde-3-phosphate
dehydrogenase/erythrose-4-phosphate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 335
Score = 474 bits (1222), Expect = e-168
Identities = 198/350 (56%), Positives = 245/350 (70%), Gaps = 16/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
+KVAINGFGRIGR R R +EVVAIND +HLLKYDS G F+ +V+
Sbjct: 1 MIKVAINGFGRIGRLVARAALERDGD-IEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKV 186
D + V+GK I+V++ R+P NLPW DLG+D+V+E TG F RE A KH++A GAKKV
Sbjct: 60 VKD-DALVVNGKGIKVLAERDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKV 118
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
LI+APGK D+ T V GVN + Y I+SNASCTTNCLAP KVL+ F
Sbjct: 119 LISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLNDAF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GI KG MTT H+YT DQ+L+D H+DLRRARAAALNI+PTSTGAAKAV LVLP LKG
Sbjct: 169 ---GIEKGLMTTVHAYTNDQKLVDGPHKDLRRARAAALNIIPTSTGAAKAVGLVLPELKG 225
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KL G+A+RVPTPNVSVVDL V++ K+ EE+NAA + +++ LKGIL ++PLVS DF
Sbjct: 226 KLTGMAIRVPTPNVSVVDLTVELEKEVTVEEINAALKAASEIGLKGILGYTEDPLVSSDF 285
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
SS D+S T+V+G ++VK++AWYDNEWGYS RVVDL +VA K
Sbjct: 286 NGDPHSSIFDASATIVLGGNLVKLVAWYDNEWGYSNRVVDLLAMVAKALK 335
>gnl|CDD|236079 PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 343
Score = 454 bits (1169), Expect = e-160
Identities = 192/350 (54%), Positives = 243/350 (69%), Gaps = 17/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K KVAINGFGRIGR R K+S E+VAIN + + +HL+KYD+ G F+ V+
Sbjct: 2 KTKVAINGFGRIGRMVFR--KAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
D + VDGK I++++NR+P LPW DLGID+VIE TG F +E A H++AGAKKV+
Sbjct: 60 AFE-DHLLVDGKKIRLLNNRDPKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVI 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
+TAPGK + T VVGVN D ++ IISNASCTTNCLAP VKVLD++F
Sbjct: 119 LTAPGKNEDVTIVVGVNEDQLDIEKHTIISNASCTTNCLAPVVKVLDEQF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GI G MTT H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA+A VLP L G
Sbjct: 169 ---GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPHLNG 225
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KL+G+ALRVPTPNVS+VDLVV V + EE+N AF+ +A+ LKGIL +EPLVS+DF
Sbjct: 226 KLHGMALRVPTPNVSLVDLVVDVKRDVTVEEINEAFKTAANGALKGILEFSEEPLVSIDF 285
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
+ S+ +D T+VMGD VKV+AWYDNEWGYS RVVDL +VA+
Sbjct: 286 NTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSCRVVDLVTLVADELA 335
>gnl|CDD|177912 PLN02272, PLN02272, glyceraldehyde-3-phosphate dehydrogenase.
Length = 421
Score = 337 bits (867), Expect = e-113
Identities = 178/419 (42%), Positives = 242/419 (57%), Gaps = 33/419 (7%)
Query: 2 ASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYR 61
+ + S + S+ S + S+SL F SS + +LQ+ S +
Sbjct: 12 TAPAAAARGSDFSSSSSDPSKVSSVGFSSSLSFSGSSSG---ASSSLQSC-SARSVQPIK 67
Query: 62 KVAAQA-----------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQA 109
A +A K K+ INGFGRIGR LR R D +EVVA+ND K
Sbjct: 68 ATATEAPPAVLKSSSSGKTKIGINGFGRIGRLVLRIATSRDD--IEVVAVNDPFIDAKYM 125
Query: 110 SHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVF 169
+++ KYDST G F+ + V + ++GK I+V S R+P +PWGD G + V+E +GVF
Sbjct: 126 AYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRDPAEIPWGDFGAEYVVESSGVF 185
Query: 170 VDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFV 229
E A H++ GAKKV+I+AP D P +VVGVN YKP+ I+SNASCTTNCLAP
Sbjct: 186 TTVEKASAHLKGGAKKVVISAP-SADAPMFVVGVNEKTYKPNMNIVSNASCTTNCLAPLA 244
Query: 230 KVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVP 288
KV+ ++F GI++G MTT H+ T Q+ +D S +D R R A+ NI+P
Sbjct: 245 KVVHEEF-------------GILEGLMTTVHATTATQKTVDGPSMKDWRGGRGASQNIIP 291
Query: 289 TSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADN 348
+STGAAKAV VLP L GKL G+A RVPTPNVSVVDL ++ K E+V AA + +++
Sbjct: 292 SSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEG 351
Query: 349 ELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 407
LKGIL DE +VS DF SS D+ + + +K+++WYDNEWGYS RV+DL
Sbjct: 352 PLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDL 410
>gnl|CDD|173322 PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase;
Provisional.
Length = 337
Score = 326 bits (836), Expect = e-110
Identities = 157/349 (44%), Positives = 212/349 (60%), Gaps = 20/349 (5%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R R+D +EVVAIND + +LLKYDS G A+V
Sbjct: 4 KLGINGFGRIGRLVFRAALERED--VEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSV 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ + K + V ++P +PWG G+D+V E TGVF+ +E A H++ GAKKV++
Sbjct: 62 -TDGFLMIGSKKVHVFFEKDPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM 120
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP K D P YV+GVN Y + I+SNASCTTNCLAP KV++ KF
Sbjct: 121 SAPPKDDTPIYVMGVNHTQYDKSQRIVSNASCTTNCLAPLAKVVNDKF------------ 168
Query: 249 AGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GI++G MTT H+ T +Q +D + D R R A +NI+P STGAAKAV V+P L
Sbjct: 169 -GIVEGLMTTVHASTANQLTVDGPSKGGKDWRAGRCAGVNIIPASTGAAKAVGKVIPELN 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKL G+A RVP P+VSVVDL +++K EE+ AA +++A+ LKGIL D+ +VS D
Sbjct: 228 GKLTGMAFRVPVPDVSVVDLTCKLAKPAKYEEIVAAVKKAAEGPLKGILGYTDDEVVSSD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
F SS D + + D VK+++WYDNEWGYS R++DLA +
Sbjct: 288 FVHDKRSSIFDVKAGIALNDTFVKLVSWYDNEWGYSNRLLDLAHYITQK 336
>gnl|CDD|184122 PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase;
Provisional.
Length = 336
Score = 313 bits (805), Expect = e-105
Identities = 144/341 (42%), Positives = 204/341 (59%), Gaps = 18/341 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN LR + GR+ + VVAIN+ + +HLLKYD++ G F DV
Sbjct: 2 IRVAINGFGRIGRNVLRALYESGRRAE-ITVVAINELADAEGMAHLLKYDTSHGRFAWDV 60
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+++ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 61 R-QERDQLFVGDDAIRLLHERDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKV 119
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD F
Sbjct: 120 LFSHPGSNDLDATVVYGVNHDQLRAEHRIVSNASCTTNCIIPVIKLLDDAF--------- 170
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A + + P
Sbjct: 171 ----GIESGTVTTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFN 226
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
+ I++RVPT NV+ +DL V V K EVN +++A GI+ + PLVS+D
Sbjct: 227 DRFEAISVRVPTINVTAIDLSVTVKKPVKVNEVNQLLQKAAQGAFHGIVDYTELPLVSID 286
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVD 406
F S+ VD + T V G ++K + W DNEWG++ R++D
Sbjct: 287 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 327
>gnl|CDD|169599 PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase;
Validated.
Length = 334
Score = 311 bits (799), Expect = e-104
Identities = 153/347 (44%), Positives = 209/347 (60%), Gaps = 21/347 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADV 126
+KV INGFGRIGR LR + LE V IND G +HLL++DS G + +V
Sbjct: 2 TIKVGINGFGRIGRLALRAAWDWPE--LEFVQINDPAGDAATLAHLLEFDSVHGRWHHEV 59
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
G D I ++GK I+ N+ + W G D+VIE +GV + ++ G K+V
Sbjct: 60 TAEG-DAIVINGKRIRTTQNKAIADTDWS--GCDVVIEASGVMKTKALLQAYLDQGVKRV 116
Query: 187 LITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244
++TAP K + + V+GVN + P PI++ ASCTTNCLAP VKV+ +K
Sbjct: 117 VVTAPVKEEGVLNIVMGVNDHLFDPAIHPIVTAASCTTNCLAPVVKVIHEKL-------- 168
Query: 245 FPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304
GI G+MTT H T Q +LDA H+DLRRARA ++++PT+TG+A A+ + P L
Sbjct: 169 -----GIKHGSMTTIHDLTNTQTILDAPHKDLRRARACGMSLIPTTTGSATAITEIFPEL 223
Query: 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
KGKLNG A+RVP N S+ D V +V + T EEVNA +E+A+ ELKGIL + PLVS+
Sbjct: 224 KGKLNGHAVRVPLANASLTDCVFEVERDTTVEEVNALLKEAAEGELKGILGYEERPLVSI 283
Query: 365 DFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
D++ SS VD+ T+V+ VK+ AWYDNEWGY+ R +LA V
Sbjct: 284 DYKTDPRSSIVDALSTMVVNGTQVKLYAWYDNEWGYANRTAELARKV 330
>gnl|CDD|130595 TIGR01532, E4PD_g-proteo, erythrose-4-phosphate dehydrogenase.
This model represents the small clade of dehydrogenases
in gamma-proteobacteria which utilize NAD+ to oxidize
erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a
precursor for the de novo synthesis of pyridoxine via
4-hydroxythreonine and D-1-deoxyxylulose. This enzyme
activity appears to have evolved from
glyceraldehyde-3-phosphate dehydrogenase, whose
substrate differs only in the lack of one carbon
relative to E4P. Accordingly, this model is very close
to the corresponding models for GAPDH, and those
sequences which hit above trusted here invariably hit
between trusted and noise to the GAPDH model
(TIGR01534). Similarly, it may be found that there are
species outside of the gamma proteobacteria which
synthesize pyridoxine and have more than one aparrent
GAPDH gene of which one may have E4PD activity - this
may necessitate a readjustment of these models.
Alternatively, some of the GAPDH enzymes may prove to be
bifunctional in certain species [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pyridoxine].
Length = 325
Score = 301 bits (771), Expect = e-100
Identities = 147/339 (43%), Positives = 203/339 (59%), Gaps = 16/339 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+VAINGFGRIGRN LR + + + + VVAIN+ +HLLKYD++ G F +V+
Sbjct: 1 RVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVR- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
D + V I+V+ R+ +LPW +LG+DLV++ TGV+ RE HI AGAKKVL
Sbjct: 60 QDRDQLFVGDDAIRVLHERSLQSLPWRELGVDLVLDCTGVYGSREHGEAHIAAGAKKVLF 119
Query: 189 TAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+ PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 120 SHPGASDLDATIVYGVNQDQLRAEHRIVSNASCTTNCIVPVIKLLDDAY----------- 168
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A + P +
Sbjct: 169 --GIESGTITTIHSAMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGIERFFPQFNDR 226
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
IA+RVPT NV+ +DL V V K A EVN +++A L+GI+ + PLVSVDF
Sbjct: 227 FEAIAVRVPTVNVTAIDLSVTVKKPVKANEVNLLLQKAAQGALRGIVDYTELPLVSVDFN 286
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVD 406
S+ VD + T V G +VK + W DNEWG++ R++D
Sbjct: 287 HDPHSAIVDGTQTRVSGAHLVKTLVWCDNEWGFANRMLD 325
>gnl|CDD|185323 PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase A;
Provisional.
Length = 331
Score = 292 bits (748), Expect = 1e-96
Identities = 162/340 (47%), Positives = 220/340 (64%), Gaps = 18/340 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 3 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 59
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 60 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 120 TGPSKDNTPMFVKGANFDKYA-GQDIVSNASCTTNCLAPLAKVINDNF------------ 166
Query: 249 AGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GII+G MTT H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L GK
Sbjct: 167 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 225
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
L G+A RVPTPNVSVVDL V++ K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 226 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 285
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 407
+S D+ + + D+ VK+++WYDNE GYS +V+DL
Sbjct: 286 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDL 325
>gnl|CDD|185614 PTZ00434, PTZ00434, cytosolic glyceraldehyde 3-phosphate
dehydrogenase; Provisional.
Length = 361
Score = 287 bits (736), Expect = 2e-94
Identities = 162/363 (44%), Positives = 223/363 (61%), Gaps = 29/363 (7%)
Query: 67 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFE 123
A +KV INGFGRIGR + C G + ++VVA+ D + + ++ +KYD+ G +
Sbjct: 2 APIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPK 61
Query: 124 ADVKPVGT-------DGISVDGKVIQVV-SNRNPVNLPWGDLGIDLVIEGTGVFVDREGA 175
V+ + D + V+G I+ V + RNP +LPWG LG+D VIE TG+F D+ A
Sbjct: 62 YTVETTKSSPSVKTDDVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAA 121
Query: 176 GKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQ 234
H++ GAKKV+I+AP G T V+GVN Y P E ++SNASCTTNCLAP V VL +
Sbjct: 122 EGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVLTK 181
Query: 235 KFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGA 293
+ GI G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGA
Sbjct: 182 EGF------------GIETGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGA 229
Query: 294 AKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGI 353
AKAV +V+P+ KGKL G++ RVPTP+VSVVDL + ++ T +E++AA + ++ +KGI
Sbjct: 230 AKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRASQTYMKGI 289
Query: 354 LSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLAD 409
L D+ LVS DF + SS DS TL K+++WYDNEWGYS RVVDL
Sbjct: 290 LGFTDDELVSADFINDNRSSIYDSKATLQNNLPGERRFFKIVSWYDNEWGYSHRVVDLVR 349
Query: 410 IVA 412
+A
Sbjct: 350 YMA 352
>gnl|CDD|165999 PLN02358, PLN02358, glyceraldehyde-3-phosphate dehydrogenase.
Length = 338
Score = 286 bits (733), Expect = 2e-94
Identities = 161/346 (46%), Positives = 220/346 (63%), Gaps = 19/346 (5%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFE 123
A K+++ INGFGRIGR R R D +E+VA+ND + +++ KYDS G ++
Sbjct: 2 ADKKIRIGINGFGRIGRLVARVVLQRDD--VELVAVNDPFITTEYMTYMFKYDSVHGQWK 59
Query: 124 ADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG 182
V D + G K + V RNP ++PWG+ G D V+E TGVF D++ A H++ G
Sbjct: 60 HHELKVKDDKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGG 119
Query: 183 AKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLND 242
AKKV+I+AP K D P +VVGVN YK D I+SNASCTTNCLAP KV++ +F
Sbjct: 120 AKKVVISAPSK-DAPMFVVGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRF------ 172
Query: 243 RIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVL 301
GI++G MTT HS T Q+ +D S +D R RAA+ NI+P+STGAAKAV VL
Sbjct: 173 -------GIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVL 225
Query: 302 PALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPL 361
P+L GKL G++ RVPT +VSVVDL V++ K +E+ A +E ++ +LKGIL ++ +
Sbjct: 226 PSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESEGKLKGILGYTEDDV 285
Query: 362 VSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDL 407
VS DF + SS D+ + + D VK+++WYDNEWGYS RVVDL
Sbjct: 286 VSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331
>gnl|CDD|236219 PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase;
Reviewed.
Length = 477
Score = 279 bits (715), Expect = 1e-89
Identities = 143/355 (40%), Positives = 198/355 (55%), Gaps = 28/355 (7%)
Query: 71 VAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-----VKQASHLLKYDSTLGIFE 123
V + GFGRIGR R + L + AI G K+AS LL+ DS G F
Sbjct: 130 VVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRAS-LLRRDSVHGPFN 188
Query: 124 ADVKP-VGTDGISVDGKVIQVVSNRNPVNLPWGDLGID--LVIEGTGVFVDREGAGKHIQ 180
+ + I +G IQV+ +P + + GI+ LV++ TG + D EG +H++
Sbjct: 189 GTITVDEENNAIIANGNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLK 248
Query: 181 A-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQ 239
+ G KVL+TAPGKGDI V GVN ++ I+S ASCTTN + P +K ++ K+
Sbjct: 249 SKGVAKVLLTAPGKGDIKNIVHGVNHSDITDEDKIVSAASCTTNAITPVLKAVNDKY--- 305
Query: 240 LNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL 299
GI+ G + T HSYT DQ L+D H+ RR R+A LN+V T TGAAKAVA
Sbjct: 306 ----------GIVNGHVETVHSYTNDQNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAK 355
Query: 300 VLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE-SADNELKGILSVCD 358
LP L GKL G A+RVPTPNVS+ L + + K+T EE+N R+ S + L+ + D
Sbjct: 356 ALPELAGKLTGNAIRVPTPNVSMAILNLNLEKETSREELNEYLRQMSLHSPLQNQIDYTD 415
Query: 359 EP-LVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+VS DF S + VDS T+V G+ V + WYDNE+GYS +VV + + +A
Sbjct: 416 STEVVSSDFVGSRHAGVVDSQATIVNGNRAV-LYVWYDNEFGYSCQVVRVMEQMA 469
>gnl|CDD|217235 pfam02800, Gp_dh_C, Glyceraldehyde 3-phosphate dehydrogenase,
C-terminal domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
C-terminal domain is a mixed alpha/antiparallel beta
fold.
Length = 157
Score = 254 bits (650), Expect = 3e-84
Identities = 99/170 (58%), Positives = 117/170 (68%), Gaps = 13/170 (7%)
Query: 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAAL 284
LAP KVL+ F GI KG MTT H+YT DQ+L+D SH+DLRR RAAA
Sbjct: 1 LAPLAKVLNDNF-------------GIEKGLMTTVHAYTADQKLVDPSHKDLRRGRAAAP 47
Query: 285 NIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 344
NI+PTSTGAAKAV LVLP LKGKL G+A RVPTPNVSVVDL V++ K EEVNAA +E
Sbjct: 48 NIIPTSTGAAKAVGLVLPELKGKLTGMAFRVPTPNVSVVDLTVELEKPVTVEEVNAALKE 107
Query: 345 SADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 394
+A+ LKGIL +EPLVS DF SS D+ T+V+ + VKV+AWY
Sbjct: 108 AAEGALKGILGYTEEPLVSSDFVGDPHSSIFDAKATIVLNGNFVKVVAWY 157
>gnl|CDD|215675 pfam00044, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 148
Score = 228 bits (585), Expect = 1e-74
Identities = 80/151 (52%), Positives = 106/151 (70%), Gaps = 3/151 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR LR + D LEVVAIND + ++LLKYDS G F+ +V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALAQDD--LEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEV 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
DG+ V+GK I+V + R+P LPWG+LG+D+V+E TGVF E A H++AGAKKV+I
Sbjct: 59 DE-DGLIVNGKKIKVFAERDPAELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNAS 219
+AP K D PT+V GVN + Y P++ I+SNAS
Sbjct: 118 SAPAKDDDPTFVYGVNHEDYDPEDDIVSNAS 148
>gnl|CDD|214851 smart00846, Gp_dh_N, Glyceraldehyde 3-phosphate dehydrogenase, NAD
binding domain. GAPDH is a tetrameric NAD-binding
enzyme involved in glycolysis and glyconeogenesis.
N-terminal domain is a Rossmann NAD(P) binding fold.
Length = 149
Score = 214 bits (548), Expect = 4e-69
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 3/152 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR LR R D +EVVAIND + ++LLKYDS G F V+
Sbjct: 1 IKVGINGFGRIGRLVLRAALERPD--VEVVAINDLTDPEYLAYLLKYDSVHGRFPGTVE- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V DG+ V+GK I+V + R+P NLPWG+LG+D+V+E TG F RE A H++AGAKKV+I
Sbjct: 58 VEGDGLVVNGKAIKVFAERDPANLPWGELGVDIVVECTGGFTTREKASAHLKAGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASC 220
+AP K PT+V GVN D Y ++ IISNASC
Sbjct: 118 SAPSKDADPTFVYGVNHDEYDGEDHIISNASC 149
>gnl|CDD|173546 PTZ00353, PTZ00353, glycosomal glyceraldehyde-3-phosphate
dehydrogenase; Provisional.
Length = 342
Score = 126 bits (317), Expect = 7e-33
Identities = 93/351 (26%), Positives = 164/351 (46%), Gaps = 32/351 (9%)
Query: 71 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPV 129
V INGFG +G+ L + D + VVA+ND + +++L+ +S L + V
Sbjct: 5 VGINGFGPVGKAVL--FASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRV 62
Query: 130 GTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ I ++G + I+V + + V + W D G+ V+E TG++ R H+ GAK V +
Sbjct: 63 VGEQIVLNGTQKIRVSAKHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFV 122
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
A D PT + G N + P+ + LAP ++ L + +
Sbjct: 123 -AGQSADAPTVMAGSNDERLSASLPVCCAGAPIAVALAPVIRALHEVY------------ 169
Query: 249 AGIIKGTMTTTHSYTGDQRLLDA---SHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
G+ + + T H Q + A + +D R+ R A I P A+ V +LP L
Sbjct: 170 -GVEECSYTAIHG-MQPQEPIAARSKNSQDWRQTRVAIDAIAPYRDNGAETVCKLLPHLV 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
G+++G A +VP +D++V+ + E V++A E+A + L G+L + ++SVD
Sbjct: 228 GRISGSAFQVPVKKGCAIDMLVRTKQPVSKEVVDSALAEAASDRLNGVLCISKRDMISVD 287
Query: 366 F-----RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIV 411
C D +S+ SS ++ K++ W+D E Y+ R++ L +
Sbjct: 288 CIPNGKLCYDATSS--SSSR---EGEVHKMVLWFDVECYYAARLLSLVKQL 333
>gnl|CDD|215163 PLN02289, PLN02289, ribulose-bisphosphate carboxylase small
chain.
Length = 176
Score = 32.9 bits (75), Expect = 0.15
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 1 MASATLS---VAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDDFHSV 45
MAS+ LS VA S Q + F+GL++SA+ P RK+++D S+
Sbjct: 1 MASSMLSSAAVATSPAQATM--VAPFTGLKSSAAFPVTRKANNDITSI 46
>gnl|CDD|223214 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 33.0 bits (76), Expect = 0.23
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 195 DIPTYVVGVNADA---YKPDEPIISNASCTTNCLAPFVKVLDQKF 236
D+P V VN + Y+ II+N +C+T L +K L F
Sbjct: 105 DVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAF 149
>gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding
Rossmann fold. This family of enzymes utilise NADP or
NAD. This family is called the GFO/IDH/MOCA family in
swiss-prot.
Length = 120
Score = 30.6 bits (70), Expect = 0.47
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG 104
L+V I G G+IGR LR + E+V I D
Sbjct: 1 LRVGIVGAGKIGRRHLRALN-ESQDGAELVGILDPD 35
>gnl|CDD|237845 PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 334
Score = 30.9 bits (71), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 195 DIPTYVVGVNADAYK--PDEPIISNASCTTNCLAPFVKVLDQKF 236
D+P V VN +A + II+N +C+T + +K L
Sbjct: 102 DVPLVVPEVNPEALAEHRKKGIIANPNCSTIQMVVALKPLHDAA 145
>gnl|CDD|177348 PHA02106, PHA02106, hypothetical protein.
Length = 91
Score = 28.9 bits (64), Expect = 1.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 389 KVIAWYDNEWGYSQRVV 405
K + WY+ EW Y + +V
Sbjct: 10 KAVKWYEQEWYYGKWIV 26
>gnl|CDD|221537 pfam12338, RbcS, Ribulose-1,5-bisphosphate carboxylase small
subunit. This domain family is found in eukaryotes,
and is approximately 40 amino acids in length. The
family is found in association with pfam00101. There is
a conserved APF sequence motif. There are two
completely conserved residues (L and P) that may be
functionally important. This family is the small
subunit of ribulose-1,5-bisphosphate.
Length = 43
Score = 27.0 bits (60), Expect = 2.4
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1 MASATLSVAKSALQGNGKGFSEFSGLRNSASLPFGRKSSDD 41
M+SA ++ S Q + + F+GL+++A+ P RK+++D
Sbjct: 5 MSSAAVATRASPAQASM--VAPFTGLKSTAAFPVTRKTNND 43
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 29.3 bits (66), Expect = 4.6
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 266 QRLLDASHRDLRRARAAALNIVPTSTGAAKAVA--LVLPALKGKLNGIALRVP 316
R L S + RR + L S GA V LVL G LNGI+L++P
Sbjct: 415 LRRLTGSTLEQRRVVRSQLAARRGSIGALSTVCGGLVLALFIGILNGISLQLP 467
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional.
Length = 372
Score = 29.0 bits (65), Expect = 5.3
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 27/89 (30%)
Query: 40 DDFHSVIALQT--SALG---------SSSSGYRK-VAAQAKLKVAINGFGRIGR------ 81
H + L+T S LG + YRK V QAK+ + F RI +
Sbjct: 86 KKVHPMSVLRTAISMLGLYDEEAEIMDEEANYRKAVRLQAKVPTIVAAFSRIRKGLDPVE 145
Query: 82 ---------NFLRCWHGRKDSPLEVVAIN 101
NFL +G + +EV A N
Sbjct: 146 PRKDLSLAANFLYMLNGEEPDEVEVEAFN 174
>gnl|CDD|226935 COG4569, MhpF, Acetaldehyde dehydrogenase (acetylating) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 310
Score = 28.4 bits (63), Expect = 6.7
Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 26/167 (15%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K KVAI G G IG + + R LE+ + G+ S L + LG
Sbjct: 4 KRKVAIIGSGNIGTDLMIKIL-RHGQHLEMAVMV---GIDPQSDGLARAARLG------- 52
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V T V G +N+P IDLV + T + A +AG + +
Sbjct: 53 -VATTHEGVIGL----------LNMP-EFADIDLVFDATSAGAHVKNAAALAEAGIRLID 100
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ 234
+T G P V VN + + D ++ +C P V + +
Sbjct: 101 LTPAAIG--PYVVPVVNLEEHV-DALNVNMVTCGGQATIPIVAAVSR 144
>gnl|CDD|181541 PRK08727, PRK08727, hypothetical protein; Validated.
Length = 233
Score = 28.3 bits (63), Expect = 6.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 278 RARAAALNIVPTSTGAAKAVALVLPALKGKL 308
RARAA + ++ T+ +ALVLP L+ +L
Sbjct: 121 RARAAGITLLYTARQMPDGLALVLPDLRSRL 151
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 28.4 bits (64), Expect = 8.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 83 FLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD 132
R D P +++A+ ++ G S K LG+F +K +GTD
Sbjct: 70 VERMGELMADDPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTD 119
>gnl|CDD|215144 PLN02256, PLN02256, arogenate dehydrogenase.
Length = 304
Score = 28.1 bits (63), Expect = 8.5
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 33 PFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG----RNFLRCWH 88
P R+ I S ++ KLK+ I GFG G + F++ H
Sbjct: 2 PLSRRPRSLRVRAIDA-AQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH 60
>gnl|CDD|233347 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978 [Amino
acid biosynthesis, Aspartate family].
Length = 338
Score = 28.2 bits (63), Expect = 8.9
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNA--DAYKPDEP 213
GID+ + G V +E A K +AG + T+ + D +P V VN +
Sbjct: 61 GIDIALFSAGGSVSKEFAPKAAKAGVIVIDNTSAFRMDPDVPLVVPEVNFEDLKEFNPKG 120
Query: 214 IISNASCTTNCLAPFVKVLDQKF 236
II+N +C+T + +K L +
Sbjct: 121 IIANPNCSTIQMVVVLKPLHDEA 143
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 28.2 bits (63), Expect = 9.0
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 265 DQRLLDASHRDLRRARAAALNIVPTS--TGAAKAVALVLPALKGKL-NGIALRVPTP 318
D R L S DL R AL ++P GA +++ V+ ++ L +G A V P
Sbjct: 98 DWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVVEMVEKLLASGAAYIVEGP 154
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,687,365
Number of extensions: 2024142
Number of successful extensions: 1822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 40
Length of query: 416
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 317
Effective length of database: 6,546,556
Effective search space: 2075258252
Effective search space used: 2075258252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)