RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014890
(416 letters)
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 648 bits (1675), Expect = 0.0
Identities = 305/349 (87%), Positives = 319/349 (91%), Gaps = 13/349 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK 60
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVL
Sbjct: 61 TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVL 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAPGKGDIPTYVVGVN + Y + IISNASCTTNCLAPFVKVLDQKF
Sbjct: 121 ITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKF----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAA LNIVPTSTGAAKAVALVLP LKGK
Sbjct: 170 --GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGK 227
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS+DFR
Sbjct: 228 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFR 287
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
C+DVSST+DSSLT+VMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN W+
Sbjct: 288 CTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKWQ 336
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 635 bits (1640), Expect = 0.0
Identities = 234/350 (66%), Positives = 272/350 (77%), Gaps = 16/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVL
Sbjct: 62 YDE-NSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 188 ITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
ITAPGKG + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 121 ITAPGKGEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GIIKGTMTTTHSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKAVALV+P LK
Sbjct: 172 ----GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELK 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKLNGIALRVPTPNVSVVDLVVQV K T E+VN ++++ +KGI+ D PLVS D
Sbjct: 228 GKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
FR +D SS VDSSLTLVM D+VKVIAWYDNEWGYSQRVVDLA++ A W
Sbjct: 288 FRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKW 337
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 635 bits (1640), Expect = 0.0
Identities = 232/350 (66%), Positives = 270/350 (77%), Gaps = 16/350 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGRNFLRCW GR+++ LEVVAIN+T + A+HLL+YDS LG F AD+
Sbjct: 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADIS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ I+V+GK +++V +RNP+NLPW + IDLVIE TGVFV EGA KHIQAGAKKVL
Sbjct: 62 YDE-NSITVNGKTMKIVCDRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVL 120
Query: 188 ITAPGKG-DIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
ITAPGK + TYV+GVN Y+ D +ISNASCTTNCLAP KVL F
Sbjct: 121 ITAPGKAEGVGTYVIGVNDSEYRHEDFAVISNASCTTNCLAPVAKVLHDNF--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GIIKGTMTTTHSYT DQR+LDASHRDLRRARAAA+NIVPT+TGAAKAVALV+P LK
Sbjct: 172 ----GIIKGTMTTTHSYTLDQRILDASHRDLRRARAAAVNIVPTTTGAAKAVALVIPELK 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
GKLNGIALRVPTPNVSVVDLVVQV K T E+VN ++++ +KGI+ D PLVS D
Sbjct: 228 GKLNGIALRVPTPNVSVVDLVVQVEKPTITEQVNEVLQKASQTTMKGIIKYSDLPLVSSD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
FR +D SS VDSSLTLVM D+VKVIAWYDNEWGYSQRVVDLA++ A
Sbjct: 288 FRGTDESSIVDSSLTLVMDGDLVKVIAWYDNEWGYSQRVVDLAELAARKS 337
>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural
genomics, PSI, protein structure initiative; HET: NAD;
2.40A {Brucella melitensis biovar ABORTUS2308} PDB:
3l0d_A*
Length = 335
Score = 625 bits (1614), Expect = 0.0
Identities = 179/345 (51%), Positives = 225/345 (65%), Gaps = 14/345 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGRN LR + ++VVAIND G V+ +HLL+YDS G F +V+
Sbjct: 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVE 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V D I V I+V + RNP LPW + +D+ +E TG+F R+ A H++AGAK+V+
Sbjct: 62 -VAGDTIDVGYGPIKVHAVRNPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVI 120
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
++AP G T V GVN D D +ISNASCTTNCLAP +VL+
Sbjct: 121 VSAPADGADLTVVYGVNNDKLTKDHLVISNASCTTNCLAPVAQVLNDTI----------- 169
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GI KG MTT HSYTGDQ LD H+DL RARAAAL+++PTSTGAAKAV LVLP LKGK
Sbjct: 170 --GIEKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGK 227
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
L+G+A+RVPTPNVSVVDL ++T EEVN A RE+A+ LKGIL DE LVS DF
Sbjct: 228 LDGVAIRVPTPNVSVVDLTFIAKRETTVEEVNNAIREAANGRLKGILGYTDEKLVSHDFN 287
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
SS + T VM MV++++WYDNEWG+S R+ D A +
Sbjct: 288 HDSHSSVFHTDQTKVMDGTMVRILSWYDNEWGFSSRMSDTAVALG 332
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 624 bits (1612), Expect = 0.0
Identities = 186/343 (54%), Positives = 237/343 (69%), Gaps = 14/343 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R + RK+ +EVVAIND K +HLLKYDS F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + VDGK I+V + +P LPW DLG+D VIE TGVF +RE A H+QAGAKKV+IT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
AP KG+ T V+G N D KP+ IIS ASCTTN +AP VKVL +KF
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKF------------- 167
Query: 250 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLN 309
GI+ G +TT HSYT DQR+LD H+DLRRARAAA+NI+PT+TGAAKAVALV+P +KGKL+
Sbjct: 168 GIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLD 227
Query: 310 GIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCS 369
G+A+RVPTP+ S+ DL V V K+T EEVNA +E+ + LKGI+ DEP+VS D +
Sbjct: 228 GMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGT 287
Query: 370 DVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
S D+++T V+G +VKV +WYDNE+GYS RVVD +++
Sbjct: 288 TFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELLL 330
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 622 bits (1606), Expect = 0.0
Identities = 183/353 (51%), Positives = 239/353 (67%), Gaps = 17/353 (4%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEA 124
+ A +VAINGFGRIGR R E+VAIN + + +HL+KYD+ G F+
Sbjct: 1 SNAMTRVAINGFGRIGRMVFRQAIKESA--FEIVAINASYPSETLAHLIKYDTVHGKFDG 58
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
V+ D + VDGK+I++++NR+P LPW DLG+++VIE TG F +E A H++AGAK
Sbjct: 59 TVEAFE-DHLLVDGKMIRLLNNRDPKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAK 117
Query: 185 KVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDR 243
KV++TAPGK + T VVGVN D + +ISNASCTTNCLAP VKVLD++F
Sbjct: 118 KVILTAPGKNEDVTIVVGVNEDQLDITKHTVISNASCTTNCLAPVVKVLDEQF------- 170
Query: 244 IFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPA 303
GI G MTT H+YT DQ+ +D H+DLRRARA +I+PT+TGAAKA+A VLP
Sbjct: 171 ------GIENGLMTTVHAYTNDQKNIDNPHKDLRRARACGQSIIPTTTGAAKALAKVLPH 224
Query: 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS 363
L GKL+G+ALRVPTPNVS+VDLVV V + E +N AF+ A+ LKGI+ +EPLVS
Sbjct: 225 LNGKLHGMALRVPTPNVSLVDLVVDVKRDVTVEAINDAFKTVANGALKGIVEFSEEPLVS 284
Query: 364 VDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 416
+DF + S+ +D T+VMGD VKV+AWYDNEWGYS+RVVDL +V +
Sbjct: 285 IDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYDNEWGYSRRVVDLVTLVVDELA 337
>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase,
hydride transfer, aldehyde dehydrogenase, PY
biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A*
2x5k_O*
Length = 339
Score = 610 bits (1576), Expect = 0.0
Identities = 144/348 (41%), Positives = 204/348 (58%), Gaps = 16/348 (4%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
++VAINGFGRIGRN +R + + + + VVAIN+ +HLLKYD++ G F +V
Sbjct: 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEV 61
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ D + V I+V+ R+ +LPW +LG+D+V++ TGV+ RE HI AGAKKV
Sbjct: 62 R-QERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKV 120
Query: 187 LITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
L + PG D+ T V GVN D + + I+SNASCTTNC+ P +K+LD +
Sbjct: 121 LFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCIIPVIKLLDDAY--------- 171
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
GI GT+TT HS DQ+++DA H DLRR RAA+ +I+P T A + P
Sbjct: 172 ----GIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRFFPQFN 227
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
+ IA+RVPT NV+ +DL V V K A EVN +++A GI+ + PLVSVD
Sbjct: 228 DRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIVDYTELPLVSVD 287
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
F S+ VD + T V G ++K + W DNEWG++ R++D +A
Sbjct: 288 FNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMAT 335
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 609 bits (1572), Expect = 0.0
Identities = 198/346 (57%), Positives = 249/346 (71%), Gaps = 17/346 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGRN R D +EVVA+ND +HLLKYDS G +A+V
Sbjct: 2 VKVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I
Sbjct: 59 VNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
+AP K + T V+GVN D Y P +ISNASCTTNCLAPF KVL ++F
Sbjct: 119 SAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQF----------- 167
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GI++G MTT HSYT DQR+LD H+DLRRARAAA +I+PT+TGAAKAVALVLP LKGK
Sbjct: 168 --GIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGK 225
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
LNG+A+RVPTPNVSVVDLV ++ K+ EEVNAA + +A+ ELKGIL+ +EPLVS D+
Sbjct: 226 LNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYN 285
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
S VSST+D+ T+V+ MVKV++WYDNE GYS RVVDLA +A+
Sbjct: 286 GSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIAS 331
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 608 bits (1570), Expect = 0.0
Identities = 176/348 (50%), Positives = 226/348 (64%), Gaps = 19/348 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVA- 56
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 57 YDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
TAP KG+ T V+GVN +AY P IISNASCTTN LAP +KVL++ F
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAF----------- 165
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
G+ K MTT HSYT DQRLLD H+DLRRARAAA+NI+PT+TGAAKA ALVLP+LKG+
Sbjct: 166 --GVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGR 223
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
+G+ALRVPT S+ D+ + ++ AEEVNAA + +A+ LKGIL+ ++ +V D
Sbjct: 224 FDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIV 283
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 415
SS VD+ LT +G +MVKV AWYDNEWGY+ RV DL ++V
Sbjct: 284 MDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRKG 330
>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway,
oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A
{Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB:
3gnq_A*
Length = 335
Score = 604 bits (1561), Expect = 0.0
Identities = 176/347 (50%), Positives = 224/347 (64%), Gaps = 17/347 (4%)
Query: 69 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR + G K +E+VAIND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V + V+G I+V +NRNP LPWG L +D+V+E TG F +E AG HI+ GAKKV+
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 188 ITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
I+APG D+ T V GVN K + +ISNASCTTNCLAP VK L+ K
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNASCTTNCLAPLVKPLNDKL---------- 170
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
G+ G MTT H+YT +Q L D H DLRRAR+A ++++PT TGAA AV VLP L G
Sbjct: 171 ---GLQDGLMTTVHAYTNNQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGDVLPELDG 227
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KLNG A+RVPT NVS+VDL + T EEVN + +++ ELKGIL EPLVSVD+
Sbjct: 228 KLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKAASEGELKGILDYNTEPLVSVDY 287
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
SSTVD+SLT V G +VKV +WYDNEWG+S R++D + +
Sbjct: 288 NHDPASSTVDASLTKVSG-RLVKVSSWYDNEWGFSNRMLDTTVALMS 333
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 596 bits (1539), Expect = 0.0
Identities = 190/355 (53%), Positives = 238/355 (67%), Gaps = 26/355 (7%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
+KV INGFGRIGR+F R GR++ +E+VAIND K +HLLKYDS GIF+ V+
Sbjct: 2 AIKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
D I VDGK I+V + ++P +PWGDLG+D+VIE TGVF DRE A KH+Q GAKKV+
Sbjct: 60 -AKDDSIVVDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVI 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
ITAP K T V+GVN + Y P E IISNASCTTNCLAP VKVL++ F
Sbjct: 119 ITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAF---------- 168
Query: 247 MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
G+ KG M T H+YT DQRLLD H+D RRARAAA+NIVPT+TGAAKA+ V+P LKG
Sbjct: 169 ---GVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKG 225
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADN-------ELKGILSVCD 358
KL+G A RVP P+ S++DL V V+K + EEVN FRE+A LK IL C+
Sbjct: 226 KLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCE 285
Query: 359 EPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+P+VS D + S+ D+ LT V+ ++V + AWYDNEWGYS R+ DL +A
Sbjct: 286 DPIVSTDIVGNPHSAIFDAPLTQVID-NLVHIAAWYDNEWGYSCRLRDLVIYLAE 339
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 590 bits (1524), Expect = 0.0
Identities = 180/359 (50%), Positives = 234/359 (65%), Gaps = 24/359 (6%)
Query: 61 RKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLG 120
+ +K+AINGFGRIGRN + R +++VAIND K +HLLKYDST G
Sbjct: 14 AQTQGPGSMKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFG 70
Query: 121 IFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFV----DREGAG 176
++ V+ I VDG+ I++++ R+P NLPW LGID+VIE TGVF D+ G
Sbjct: 71 VYNKKVESRD-GAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYL 129
Query: 177 KHI-QAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQK 235
H+ AGAKKV++T P K +I T V+GVN D +SNASCTTNCLAP KVL +
Sbjct: 130 DHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHES 189
Query: 236 FVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAK 295
F GI +G MTT H+YT DQR+LD H DLRRARAAAL+I+PTSTGAAK
Sbjct: 190 F-------------GIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAK 236
Query: 296 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADN-ELKGI 353
AV LVLP LKGKLNG ++RVP P S+VDL VQ+ KK EE+N+ R++++ ELKGI
Sbjct: 237 AVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGI 296
Query: 354 LSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
L ++P+VS D + + SS VD T+V+ + K+++WYDNE+GYS RVVDLA +
Sbjct: 297 LGYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLV 355
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 524 bits (1352), Expect = 0.0
Identities = 151/351 (43%), Positives = 201/351 (57%), Gaps = 26/351 (7%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KVAINGFGRIGR R + LEVVA+ND +HLLKYD+ G F +V+
Sbjct: 5 VKVAINGFGRIGRLAFRRIQEVEG--LEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVE- 61
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V G V+GK ++ S + LPW DL ID+V+E TG + D++ A HI+AGAKKVLI
Sbjct: 62 VVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
+AP GD+ T V N E ++S ASCTTN LAP KVL+ F
Sbjct: 122 SAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDF------------ 169
Query: 249 AGIIKGTMTTTHSYTGDQRLLDASHR--DLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
G+++G MTT H+YTGDQ DA HR D RRARAAA NI+P STGAAKA+ V+P + G
Sbjct: 170 -GLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDG 228
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 365
KL+G A RVP S+ +L V + K+ E+VN A + +++ ++ +VS D
Sbjct: 229 KLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASN----ESFGYTEDEIVSSD 284
Query: 366 FRCSDVSSTVDSSLTLVMG---DDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
S D++ T VM +VKV AWYDNE Y+ ++V +A
Sbjct: 285 VVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAE 335
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 493 bits (1272), Expect = e-176
Identities = 162/345 (46%), Positives = 222/345 (64%), Gaps = 18/345 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMC 248
T P K + P +V G N D Y + I+SNASCTTNCLAP KV++ F
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQD-IVSNASCTTNCLAPLAKVINDNF------------ 165
Query: 249 AGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKGK 307
GII+G MTT H+ T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L GK
Sbjct: 166 -GIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGK 224
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 367
L G+A RVPTPNVSVVDL V++ K E++ AA + +A+ E+KG+L ++ +VS DF
Sbjct: 225 LTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFN 284
Query: 368 CSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
+S D+ + + D+ VK+++WYDNE GYS +V+DL ++
Sbjct: 285 GEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 329
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 488 bits (1260), Expect = e-174
Identities = 161/350 (46%), Positives = 217/350 (62%), Gaps = 21/350 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADV 126
+ + INGFGRIGR LR R D + VVAIND V+ ++LLKYDS G F V
Sbjct: 17 QGTLGINGFGRIGRLVLRACMERND--ITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTV 74
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ V + ++GKV++V ++P +PWG G +V E TGVF E A H++ GAKKV
Sbjct: 75 E-VSGKDLCINGKVVKVFQAKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKV 133
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+I+AP K ++P YV+GVN Y P + +ISNASCTTNCLAP K+++ KF
Sbjct: 134 IISAPPKDNVPMYVMGVNNTEYDPSKFNVISNASCTTNCLAPLAKIINDKF--------- 184
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLP 302
GI++G MTT HS T +Q +D + D R R A NI+P STGAAKAV V+P
Sbjct: 185 ----GIVEGLMTTVHSLTANQLTVDGPSKGGKDWRAGRCAGNNIIPASTGAAKAVGKVIP 240
Query: 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLV 362
AL GKL G+A+RVPTP+VSVVDL +++K EE+ A +E+++ +KGI+ + +V
Sbjct: 241 ALNGKLTGMAIRVPTPDVSVVDLTCKLAKPASIEEIYQAVKEASNGPMKGIMGYTSDDVV 300
Query: 363 SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
S DF SS D + + + D VK+I+WYDNE GYS R+VDLA VA
Sbjct: 301 STDFIGCKYSSIFDKNACIALNDSFVKLISWYDNESGYSNRLVDLAVYVA 350
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 485 bits (1250), Expect = e-172
Identities = 157/352 (44%), Positives = 212/352 (60%), Gaps = 20/352 (5%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEAD 125
A K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F +
Sbjct: 10 AATKLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFPCE 67
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
V + + K + V + ++P +PWG +D+V E TGVF+ +E A H++ GAKK
Sbjct: 68 VT-HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKK 126
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
V+++AP K D P YV+G+N Y + I+SNASCTTNCLAP KV++ +F
Sbjct: 127 VIMSAPPKDDTPIYVMGINHHQYDTKQLIVSNASCTTNCLAPLAKVINDRF--------- 177
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPTSTGAAKAVALVLP 302
GI++G MTT H+ T +Q ++D + D R R A NI+P STGAAKAV VLP
Sbjct: 178 ----GIVEGLMTTVHASTANQLVVDGPSKGGKDWRAGRCALSNIIPASTGAAKAVGKVLP 233
Query: 303 ALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLV 362
L GKL G+A RVP VSVVDLV ++ K EEV +++A+ LKGIL ++ +V
Sbjct: 234 ELNGKLTGVAFRVPIGTVSVVDLVCRLQKPAKYEEVALEIKKAAEGPLKGILGYTEDEVV 293
Query: 363 SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
S DF + SS D L + D+ K+++WYDNEWGYS RV+DLA + +
Sbjct: 294 SQDFVHDNRSSIFDMKAGLALNDNFFKLVSWYDNEWGYSNRVLDLAVHITTS 345
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 483 bits (1245), Expect = e-171
Identities = 156/361 (43%), Positives = 218/361 (60%), Gaps = 29/361 (8%)
Query: 69 LKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEAD 125
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+ +
Sbjct: 3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYE 62
Query: 126 VKPVGT-------DGISVDGKVIQVVSN-RNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
V + D + V+G I V RNP +LPWG LG++ VIE TG+F + A
Sbjct: 63 VTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEG 122
Query: 178 HIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKF 236
H++ GA+KV+I+AP G T V+GVN Y P + ++SNASCTTNCLAP V VL
Sbjct: 123 HLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVL---- 178
Query: 237 VTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAK 295
+ + G+ G MTT HSYT Q+ +D S +D R RAAA+NI+P++TGAAK
Sbjct: 179 ---VKEGF-----GVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAK 230
Query: 296 AVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILS 355
AV +V+P+ +GKL G++ RVPTP+VSVVDL ++ T +E++AA + ++ +KGIL
Sbjct: 231 AVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILG 290
Query: 356 VCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAWYDNEWGYSQRVVDLADIV 411
DE LVS DF + SS DS TL K+++WYDNEWGYS RVVDL +
Sbjct: 291 YTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSWYDNEWGYSHRVVDLVRHM 350
Query: 412 A 412
A
Sbjct: 351 A 351
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 481 bits (1241), Expect = e-171
Identities = 164/346 (47%), Positives = 220/346 (63%), Gaps = 19/346 (5%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVK 127
++VAINGFGRIGR +R R + +EVVA+ND A+++ KYDST G + +V
Sbjct: 2 VRVAINGFGRIGRLVMRIALSRPN--VEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVS 59
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
I VDGK I R+P NLPWG +D+ I+ TGVF + + A KHI AGAKKV+
Sbjct: 60 -HDDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVV 118
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
ITAP P +V+GVN + Y D I+SNASCTTNCLAP KV++ F
Sbjct: 119 ITAPSS-TAPMFVMGVNEEKYTSDLKIVSNASCTTNCLAPLAKVINDAF----------- 166
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPALKG 306
GI +G MTT HS T Q+ +D SH+D R R A+ NI+P+STGAAKAV VLP L+G
Sbjct: 167 --GIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQG 224
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
KL G+A RVPT +VSVVDL V+++K+T +E+ + +A+ +LKG+L ++ +VS DF
Sbjct: 225 KLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDF 284
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
SS D+S + + VK+++WYDNE+GYS RVVDL + VA
Sbjct: 285 LGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 477 bits (1230), Expect = e-169
Identities = 148/348 (42%), Positives = 207/348 (59%), Gaps = 21/348 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADV 126
+L V INGFGRIGR LR + ++VVA+ND + ++ KYDST G ++ V
Sbjct: 7 ELTVGINGFGRIGRLVLRACMEKG---VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSV 63
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+ + VD I V + P +PW +G V+E TGV++ + A HI AGA++V
Sbjct: 64 E-FRNGQLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRV 122
Query: 187 LITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+I+AP D P +V+GVN + Y P I+SNASCTTNCLAP KV+ ++F
Sbjct: 123 VISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERF--------- 172
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304
GI++G MTT HSYT Q+ +D S + R R A NI+P STGAAKAV V+P L
Sbjct: 173 ----GIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPEL 228
Query: 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
KGKL G+A RVPTP+VSVVDL ++++ + A + +A + GIL+ ++ +VS
Sbjct: 229 KGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVST 288
Query: 365 DFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF SS D+ + + D+ VK+I+WYDNE+GYS RVVDL +
Sbjct: 289 DFLGDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSHRVVDLLRYMF 336
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 475 bits (1225), Expect = e-169
Identities = 156/349 (44%), Positives = 217/349 (62%), Gaps = 19/349 (5%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFE-A 124
K+K+ INGFGRIGR R +D +E+VA+ND +++ KYD+ G ++ +
Sbjct: 2 GKIKIGINGFGRIGRLVARVALQSED--VELVAVNDPFITTDYMTYMFKYDTVHGQWKHS 59
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
D+K + + + K + V RNP +PW + G + V+E TGVF D+E A H++ GAK
Sbjct: 60 DIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAK 119
Query: 185 KVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRI 244
KV+I+AP K D P +V GVN D Y D I+SNASCTTNCLAP KV+ F
Sbjct: 120 KVVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNF-------- 170
Query: 245 FPMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPA 303
GII+G MTT H+ T Q+ +D S +D R RAA+ NI+P+STGAAKAV VLP
Sbjct: 171 -----GIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPD 225
Query: 304 LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVS 363
L GKL G++ RVPT +VSVVDL V++ K + + +A + +++ +LKGI+ +E LVS
Sbjct: 226 LNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVS 285
Query: 364 VDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF SS D+ + + D+ VK++AWYDNEWGYS RV+DL +A
Sbjct: 286 TDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 467 bits (1204), Expect = e-165
Identities = 151/348 (43%), Positives = 204/348 (58%), Gaps = 19/348 (5%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEAD 125
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F
Sbjct: 2 GKVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGT 59
Query: 126 VKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
VK + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+
Sbjct: 60 VK-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKR 118
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
V+I+AP D P +V+GVN + Y IISNASCTTNCLAP KV+ F
Sbjct: 119 VIISAPSA-DAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNF--------- 168
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDA-SHRDLRRARAAALNIVPTSTGAAKAVALVLPAL 304
GI++G MTT H+ T Q+ +D S + R R A NI+P STGAAKAV V+P L
Sbjct: 169 ----GIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPEL 224
Query: 305 KGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSV 364
GKL G+A RVPT NVSVVDL ++ K +++ +++++ LKGIL + +VS
Sbjct: 225 NGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSS 284
Query: 365 DFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 412
DF SST D+ + + D VK+I+WYDNE+GYS RVVDL +A
Sbjct: 285 DFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase,
oxidoreductase; HET: NAP; 2.10A {Methanothermus
fervidus} SCOP: c.2.1.3 d.81.1.1
Length = 337
Score = 281 bits (721), Expect = 1e-92
Identities = 66/348 (18%), Positives = 114/348 (32%), Gaps = 45/348 (12%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKP 128
VAING+G +G+ + D ++V+ ++ T + L K VK
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
GI V G V ++ D+VI+ T + + + + G K +
Sbjct: 61 FEKAGIEVAGTVDDMLDEA------------DIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 189 TAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPM 247
DI ++ N + + SC T L +K L F
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESY-GKDYTRVVSCNTTGLCRTLKPLHDSF----------- 156
Query: 248 CAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVAL-VLPALKG 306
GI K ++ ++ I+P V L
Sbjct: 157 --GIKKVRAVIVRRGADPAQV----------SKGPINAIIPNPPKLPSHHGPDVKTVLDI 204
Query: 307 KLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 366
++ +A+ VPT + +++V+V + +++ F + + IL ++ L S
Sbjct: 205 NIDTMAVIVPTTLMHQHNVMVEVEETPTVDDIIDVFE----DTPRVILISAEDGLTSTAE 260
Query: 367 RCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
S L + I DNE Y Q V +DIV N
Sbjct: 261 IMEYAKELGRSRNDLFEIPVWRESITVVDNEIYYMQAVHQESDIVPEN 308
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde
3-phosphate binding, alpha and beta proteins (A/B)
class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus
jannaschii}
Length = 343
Score = 262 bits (672), Expect = 3e-85
Identities = 51/353 (14%), Positives = 110/353 (31%), Gaps = 45/353 (12%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KV ING+G IG+ + D +EV+ + T + ++ V
Sbjct: 2 PAKVLINGYGSIGKRVADAVSMQDD--MEVIGVTKT-----KPDFEARLAVEKGYKLFVA 54
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+ + + + +++ D+V++G + ++ + K +
Sbjct: 55 IPDNERV-KLFEDAGIPVEGTILDIIED---ADIVVDGAPKKIGKQNLENIYKPHKVKAI 110
Query: 188 ITAP--GKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+ K + + + + + SC T L + ++
Sbjct: 111 LQGGEKAKDVEDNFNALWSYNRCYGKD-YVRVVSCNTTGLCRILYAINSIA--------- 160
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
I K + A N V + V V+P +
Sbjct: 161 ----DIKKARIVLVRRAADPNDDKT------GPVNAITPNPVTVPSHHGPDVVSVVPEFE 210
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGILSVCDEPL 361
GK+ A+ VPT + + L+V+V +++ A +++ G S
Sbjct: 211 GKILTSAVIVPTTLMHMHTLMVEVDGDVSRDDILEAIKKTPRIITVRAEDGFSSTAKIIE 270
Query: 362 VSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 414
D D + +V ++ + V+ +NE Q V + ++ N
Sbjct: 271 YGRDLG----RLRYDINELVVW-EESINVL---ENEIFLMQAVHQESIVIPEN 315
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD,
oxidoreductase, structural genomics; HET: NAD; 2.00A
{Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Length = 334
Score = 240 bits (614), Expect = 1e-76
Identities = 50/338 (14%), Positives = 103/338 (30%), Gaps = 48/338 (14%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K+KV +NG+G IG+ + D +E++ I T ++ K ++
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTK-PDFEAYRAKELGIPVYAASEEF 58
Query: 128 PVG--TDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKK 185
+G V G L +D++++ T + + + +AG K
Sbjct: 59 IPRFEKEGFEVAG------------TLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKA 106
Query: 186 VLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIF 245
+ V + + SC T L + + +
Sbjct: 107 IFQGGEKADVAEVSFVAQANYEAALGKNYVRVVSCNTTGLVRTLSAIREYA--------- 157
Query: 246 PMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPALK 305
+ M + D + R A V + V V+P
Sbjct: 158 ----DYVYAVMIRRAADPNDTK---------RGPINAIKPTVEVPSHHGPDVQTVIP--- 201
Query: 306 GKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGILSVCDEPL 361
+ +A VPT + V ++V++ K ++V F + + KG S
Sbjct: 202 INIETMAFVVPTTLMHVHSVMVELKKPLTKDDVIDIFENTTRVLLFEKEKGFDSTAQIIE 261
Query: 362 VSVD--FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
+ D +++ ++ + + + I E
Sbjct: 262 FARDLHREWNNLYEIAVWKESINIKGNRLFYIQAVHQE 299
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 208 bits (530), Expect = 3e-64
Identities = 47/336 (13%), Positives = 111/336 (33%), Gaps = 45/336 (13%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
VA+NG+G IG+ + D +++V + T +A + + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
GI V G V ++ D+V++ T V + ++Q +
Sbjct: 61 EESGIPVAGTVEDLIK------------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG 108
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
+ + I SC T L + +++
Sbjct: 109 GEKAEVADISFSALCNYNEALGKKYIRVVSCNTTALLRTICTVNKVS------------- 155
Query: 250 GIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGA--AKAVALVLPALKGK 307
+ K T + ++++ +L P + + AK V V+
Sbjct: 156 KVEKVRATIVRRAADQK--------EVKKGPINSLVPDPATVPSHHAKDVNSVIR--NLD 205
Query: 308 LNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAD----NELKGILSVCDEPLVS 363
+ +A+ PT + + + + + K +++ + + + + + V+
Sbjct: 206 IATMAVIAPTTLMHMHFINITLKDKVEKKDILSVLENTPRIVLISSKYDAEATAELVEVA 265
Query: 364 VDFRCS--DVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
D + D+ + S ++ + DD V ++ E
Sbjct: 266 RDLKRDRNDIPEVMIFSDSIYVKDDEVMLMYAVHQE 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 4e-08
Identities = 71/458 (15%), Positives = 135/458 (29%), Gaps = 166/458 (36%)
Query: 5 TLSVAKSALQGNGKGFSEFSGLRNS--ASLPF---GRKSSDDFHSVIALQTSALG----- 54
L V ++ F S L+ LP G + D+ + L LG
Sbjct: 19 VLLVPTAS-------FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 55 ---SSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-----SPLEVVAINDTGGV 106
S + +V L + + F +L D + L NDT V
Sbjct: 72 VEPSKVGQFDQV-----LNLCLTEFE---NCYLE----GNDIHALAAKLL--QENDTTLV 117
Query: 107 KQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGT 166
K + Y A ++++ R L
Sbjct: 118 KTKELIKNY------ITA-----------------RIMAKRPFDKKSNSAL--------- 145
Query: 167 GVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAD-------AYKPD-EPIISNA 218
F + + G +++ G+G+ Y + Y +I +
Sbjct: 146 --F-------RAVGEGNAQLVAIFGGQGNTDDYF-----EELRDLYQTYHVLVGDLIKFS 191
Query: 219 SCTTNCLAP--------FVKVLD-QKFVTQLNDR----------I-FPMCAGIIKGTMTT 258
+ T + L F + L+ +++ ++ I P +I +
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP----LI--GVIQ 245
Query: 259 THSYTGDQRLLDASHRDLRRARAAAL----NIVPTSTGAAKAVA----------LVLPAL 304
Y +LL + +LR A +V A A+A V A+
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV-----TAVAIAETDSWESFFVSVRKAI 300
Query: 305 KGKLNGIALRV--PTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGI----LSVCD 358
L I +R PN S+ +++ +S +N +G+ LS+ +
Sbjct: 301 T-VLFFIGVRCYEAYPNTSLPPSILE---------------DSLENN-EGVPSPMLSISN 343
Query: 359 EPLVSVDFRCSDVSSTVDS----SLTLVMGDDMVKVIA 392
V + +S + + ++LV G + V++
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVS 380
Score = 48.1 bits (114), Expect = 5e-06
Identities = 93/513 (18%), Positives = 168/513 (32%), Gaps = 156/513 (30%)
Query: 2 ASATLSVAKSALQGNGKGF-SEFSGLRNS------ASLPFGRKSSDD---------FHSV 45
V L F + + L + A L ++ +
Sbjct: 77 VGQFDQVLNLCLTE----FENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 46 IALQTSALGSSSSG-YRKVAA-QAKLKVAINGFGRIGRNFLRCWHGRKDSPL-EVVAIND 102
I + S+S +R V A+L VAI FG G+ G D E+ +
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQL-VAI--FG--GQ-------GNTDDYFEELRDLYQ 178
Query: 103 TGG------VKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN-------- 148
T +K ++ L S L D + V T G+++ ++ + N +
Sbjct: 179 TYHVLVGDLIKFSAETL---SELIRTTLDAEKVFTQGLNI----LEWLENPSNTPDKDYL 231
Query: 149 ---PVNLPWGDLGIDLV----------IEG--TGVFVDR-EGAGKHIQAGAKKVLITA-- 190
P++ P I ++ + G G +GA H Q L+TA
Sbjct: 232 LSIPISCP----LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG-----LVTAVA 282
Query: 191 PGKGD--------IPTYV-----VGVNA-DAYKPD---EPIISNASCTTNCLAP----FV 229
+ D + + +GV +AY P+ P I S N P +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 230 KVLD----QKFVTQLNDRIFP---MCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAA 282
L Q +V + N + + ++ G +G + L + LR+A+A
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--KNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 283 A-LNI--VPTSTGAAKAVALVLPA--------LKGKLNGIALRVPTPNVS--VVDLVVQV 329
+ L+ +P S K LP L + I + NVS D+ + V
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 330 SKKTFAEEVNAAFRESADNELKGIL-SVCDEPLVSVDF-RCSDVSST--VD------SSL 379
+ + R + + + I+ + P V + + +T +D S L
Sbjct: 460 ----YDTFDGSDLRVLSGSISERIVDCIIRLP---VKWETTTQFKATHILDFGPGGASGL 512
Query: 380 TLVMGDDM----VKVI------AWYDNEWGYSQ 402
++ + V+VI D+++G+ Q
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFKQ 545
Score = 37.7 bits (87), Expect = 0.007
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 45/154 (29%)
Query: 2 ASATLSVAK-SALQGNGK--------GFS--EFSGLRNSA-SLPFGRKSSDDFHSV---- 45
A + A L+ G G S E++ L + A + V
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI----ESLVEVVFYRG 1790
Query: 46 IALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIG--------RNFLRCWHGRKDSPLEV 97
+ +Q A+ G +AIN GR+ + + R +E+
Sbjct: 1791 MTMQV-AVPRDELGRSNYGM-----IAINP-GRVAASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 98 VAIN----------DTGGVKQASHLLKYDSTLGI 121
V N D + +++L + I
Sbjct: 1844 VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI 1877
Score = 34.6 bits (79), Expect = 0.061
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 44/137 (32%)
Query: 257 TTTHSYTGDQRLLD--------------ASHRDLRRARAAALNIVPT-------STG--- 292
+T++++ ++ LL A+ DL+ ++P S G
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK-----GLIPADATFAGHSLGEYA 1768
Query: 293 AAKAVALVLP---ALK-----GKLNGIALRVP-----TPNVSVVDLVVQVSKKTFAEEVN 339
A ++A V+ ++ G +A VP N ++ + +F++E
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVA--VPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 340 AAFRESADNELKGILSV 356
E ++ +
Sbjct: 1827 QYVVERVGKRTGWLVEI 1843
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 5e-06
Identities = 39/296 (13%), Positives = 85/296 (28%), Gaps = 89/296 (30%)
Query: 200 VVGVNADAYKPD----------EPIISNASCTTNCLAP---------FVKVLD------Q 234
++ V DA+ + + I+S ++ F +L Q
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 235 KFVTQLNDRIFPMCAGII----KGTMTTTHSYTGDQRLLDASHRD--------------L 276
KFV ++ + I + T Y +QR D + D
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQR--DRLYNDNQVFAKYNVSRLQPY 137
Query: 277 RRARAAALNIVPTS-------TGAAKAVALVLPAL-----KGKLNG----IAL-RVPTPN 319
+ R A L + P G+ K + L + K++ + L +P
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 320 VSV---VDLVVQVSKKTFAEEVNAAFR-----ESADNELKGILS-------------VCD 358
+ L+ Q+ + + + S EL+ +L V +
Sbjct: 197 TVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 359 EPLV-SVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 413
+ + C + +T +T + I+ + + ++ ++
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLK 309
Score = 35.6 bits (81), Expect = 0.037
Identities = 48/328 (14%), Positives = 100/328 (30%), Gaps = 121/328 (36%)
Query: 72 AINGFGRIGRNFLRCW----HGRKDSPLEVV--AIN--DTGGVKQASHLLKYDSTLGIFE 123
++ R+ L W H D ++ ++N + ++ +D L +F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDR-LSVFP 382
Query: 124 ADVK-PVGT------DGISVDGKVIQVVS--------NRNP----VNLPWGDLGIDLVIE 164
P D I D V+ VV+ + P +++P + ++L ++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVEKQPKESTISIP--SIYLELKVK 438
Query: 165 GTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNC 224
++ E A H + ++ D Y I + +
Sbjct: 439 -----LENEYA-LH-----RSIV------------------DHYN-----IPKTFDSDDL 464
Query: 225 LAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASH-RDLRRARAAA 283
+ P+ LDQ F +S+ G H +++
Sbjct: 465 IPPY---LDQYF-----------------------YSHIGH-------HLKNIEHPERMT 491
Query: 284 LNIVPTSTGAAKAVALVLPALKGKL--NGIALRVPTPNVSVVDLVVQVSK-KTFAEEVNA 340
L + V L L+ K+ + A S+++ + Q+ K + + N
Sbjct: 492 L---------FRMVFLDFRFLEQKIRHDSTAWNASG---SILNTLQQLKFYKPYICD-ND 538
Query: 341 AFRESADNELKGILSVCDEPLVSVDFRC 368
E N + L +E L+ +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTD 566
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 45.7 bits (108), Expect = 1e-05
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 35/140 (25%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
K++ AI G+G IGR L+ D E+ I + L + I + +
Sbjct: 9 KIRAAIVGYGNIGRYALQALREAPD--FEIAGIVRRNPAEVPFELQPFRVVSDIEQLE-- 64
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
+D+ + + A + ++ G
Sbjct: 65 ------------------------------SVDVALVCSPSREVERTALEILKKG-ICTA 93
Query: 188 ITAPGKGDIPTYVVGVNADA 207
+ I + A
Sbjct: 94 DSFDIHDGILALRRSLGDAA 113
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase;
HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB:
2ixb_A*
Length = 444
Score = 38.2 bits (88), Expect = 0.005
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 51 SALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
+ + SS+ K+++A G G+ + R D +E+VA D
Sbjct: 3 ALIPSSTLFNIFDFNPKKVRIAFIAVGLRGQTHVENMARRDD--VEIVAFAD 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.023
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 107 KQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 140
KQA L K ++L ++ D P +++ +
Sbjct: 19 KQA--LKKLQASLKLYADDSAP----ALAIKATM 46
Score = 28.4 bits (62), Expect = 2.6
Identities = 4/14 (28%), Positives = 7/14 (50%), Gaps = 2/14 (14%)
Query: 208 YKPDE-PIIS-NAS 219
Y D P ++ A+
Sbjct: 32 YADDSAPALAIKAT 45
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 34.8 bits (80), Expect = 0.043
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
K V + G GR G LR + + + +
Sbjct: 7 KFGVVVVGVGRAGSVRLRDLKDPRSA--AFLNLIG 39
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 34.2 bits (78), Expect = 0.059
Identities = 36/167 (21%), Positives = 56/167 (33%), Gaps = 24/167 (14%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAI G G IG + + R LE+ A+ G+ AS L +G+
Sbjct: 4 KLKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAM---VGIDAASDGLARAQRMGV------ 53
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
G+ +G + ID V + T + QA L
Sbjct: 54 TTTYAGV--EGLIKLPEFA-----------DIDFVFDATSASAHVQNEALLRQAKPGIRL 100
Query: 188 ITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQ 234
I P V VN + + + ++ +C P V + +
Sbjct: 101 IDLTPAAIGPYCVPVVNLEEHL-GKLNVNMVTCGGQATIPMVAAVSR 146
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor
ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A
{Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB:
1dap_A* 2dap_A* 3dap_A*
Length = 320
Score = 34.1 bits (78), Expect = 0.066
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAI 100
++VAI G+G +GR+ + + D +++V I
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPD--MDLVGI 33
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.19
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 26/174 (14%)
Query: 169 FVDREGAGKHI---QAGAKKVLITAPGKGDIPTYVVGVNADAYK-----PDEPIISNASC 220
F++ +GAG I A K + P G + D P + I++ A
Sbjct: 1177 FMEAQGAGIQIIMQADLALK--MGVPIYGIVAMA--ATATDKIGRSVPAPGKGILTTARE 1232
Query: 221 TTNCLAPFVKVLDQKFVTQLNDR----IFPMCA---GIIKGTMTTTHSYTGDQRLLDASH 273
+ + L+ K+ + I +K S DQ
Sbjct: 1233 HHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPS--EDQNEFLLE- 1289
Query: 274 RDLRRARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVV 327
R R A + ++ + + T +++ DL V
Sbjct: 1290 ----RTREIHNEAESQLRAAQQQWGNDFYKRDPRIAPLRGALATYGLTIDDLGV 1339
Score = 31.4 bits (71), Expect = 0.78
Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 250 GIIKGTMTTTHSYTGDQRLLDASHR---DLRRARAAALNIVPT------STGAAKAVALV 300
G+ T+T + D+ + L R+ + V GAA A +
Sbjct: 1338 GVASFHGTSTKA--NDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMN 1395
Query: 301 --LPALKGKLNGIA-----LRVPTPNVSVVDLVVQVSKKTFAEEVNAAF 342
L L +GI + + V+ SK + V A
Sbjct: 1396 GALQILN---SGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVRAVS 1441
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding
rossmann fold, structural genomics; HET: MSE PG4 PGE;
1.85A {Magnetospirillum magnetotacticum}
Length = 315
Score = 31.9 bits (73), Expect = 0.33
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 64 AAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
A + +++A+ G GR G+N++R G +V +
Sbjct: 6 ANNSPVRLALIGAGRWGKNYIRTIAGLPG--AALVRLAS 42
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 31.4 bits (72), Expect = 0.43
Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDS----PLEVVAINDTGGVKQASHLLKYDSTLGIFE 123
++++ + G G +G N LR ++VV ++D+ +L D + I
Sbjct: 4 EIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNL---DISSIISN 60
Query: 124 ADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-- 181
+ +D + + DL+++ T D +
Sbjct: 61 KEKTGRISDRAFSGPEDLM-------------GEAADLLVDCTPASRDGVREYSLYRMAF 107
Query: 182 GAKKVLITA 190
+ ++TA
Sbjct: 108 ESGMNVVTA 116
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 30.8 bits (70), Expect = 0.83
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103
+ K ++ I G+G +G + + LEV + D
Sbjct: 2 SLKKYQLVIVGYGGMGSYHVTLASAADN--LEVHGVFDI 38
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT 103
K++ A+ G GRI N D E++ + D
Sbjct: 13 KIRFALVGCGRIANNHFGALEKHADR-AELIDVCDI 47
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 67 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADV 126
A +K+ + G+G + + R ++ E+V + + + Y + ADV
Sbjct: 2 ASMKILLIGYGAMNQRVARL---AEEKGHEIVGVIENTPKATTPYQQ-YQHIADVKGADV 57
>1xo8_A AT1G01470; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG, unknown
function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Length = 151
Score = 29.2 bits (65), Expect = 1.6
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 118 TLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
+ + D+K V D + KV V+N ++P ++ G + +
Sbjct: 23 EGSVTDVDLKDVNRDSVEYLAKVS--VTNPYSHSIPICEISFTFHSAGREIGKGKIPDPG 80
Query: 178 HIQAGAKKVL 187
++A L
Sbjct: 81 SLKAKDMTAL 90
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 29.6 bits (67), Expect = 1.7
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
L++A+ G GRIG D E+V I D
Sbjct: 4 TLRIALFGAGRIGHVHAANIAANPDL--ELVVIAD 36
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 29.6 bits (67), Expect = 1.8
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 65 AQAKLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDT 103
+ + +A+ G+G +G+ F L + +
Sbjct: 4 SNNTINIALIGYGFVGKTFHAPLIRSVPG--LNLAFVASR 41
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 29.6 bits (67), Expect = 1.8
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
+ VA G GR + + ++V
Sbjct: 5 PVGVAAIGLGRWAYVMADAYTKSEKL--KLVTCYS 37
>1yyc_A LEA protein, putative late embryogenesis abundant protein;
structural genomics, protein structure initiative, CESG;
NMR {Arabidopsis thaliana}
Length = 174
Score = 28.9 bits (64), Expect = 2.1
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 118 TLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGK 177
+ + D K V DG+ KV V N ++P + L +
Sbjct: 46 EATVDDVDFKGVTRDGVDYHAKVS--VKNPYSQSIPICQISYILKSATRTIASGTIPDPG 103
Query: 178 HIQAGAKKVL 187
+ VL
Sbjct: 104 SLVGSGTTVL 113
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
2h2a_A*
Length = 189
Score = 29.0 bits (66), Expect = 2.1
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 20/74 (27%)
Query: 354 LSVCDEPLVSVD---FRCSDVSSTVD-----------SSLTLVMGDDMVKVIA-WYDNEW 398
+ + + + + S T D S L V+G D + WY
Sbjct: 62 MIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQ--- 118
Query: 399 GYSQRVVDLADIVA 412
+ + ++ V
Sbjct: 119 --IEYLKEMVTFVV 130
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine
deaminase, ferredoxin-like domain; 2.40A {Methanopyrus
kandleri}
Length = 278
Score = 28.9 bits (64), Expect = 2.6
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 163 IEGTGVFVDR----EGAGKHIQAGAKKVLITAPGKGDIPTYV--VGVNADAYKPDEPI 214
+EG VFV A + +AG V+ G+G P Y+ GV PDEP+
Sbjct: 55 VEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGRGLGPYYLARSGVEVVEVHPDEPL 112
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 29.1 bits (66), Expect = 2.8
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 22/130 (16%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDS-----PLEVVAINDTGGVKQASHLLKYDSTLGIF 122
+ ++I G G +G N LR + VV + D+ + +G
Sbjct: 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERI-----DIGKV 60
Query: 123 EADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA- 181
+ + D + + R+ D+V++ T D + +
Sbjct: 61 ISYKEKGSLDSLEYESISASEALARD----------FDIVVDATPASADGKKELAFYKET 110
Query: 182 -GAKKVLITA 190
K ++TA
Sbjct: 111 FENGKDVVTA 120
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 68 KLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDT 103
K+KV + G+G + F G LE+ ++ +
Sbjct: 7 KIKVGLLGYGYASKTFHAPLIMGTPG--LELAGVSSS 41
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 29.0 bits (66), Expect = 3.3
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 195 DIPTYVVGVNADAYK--PDEPIISNASCTTNCLAPFVKVLDQKF 236
P +V VNA+ ++S+ L + L
Sbjct: 106 VAPPVMVSVNAERLASQAAPFLLSSPCAVAAELCEVLAPLLATL 149
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
PDB: 1yul_A* 1yun_A*
Length = 242
Score = 28.5 bits (64), Expect = 3.4
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 21/75 (28%)
Query: 354 LSVCDEPLVSVD---FRCSDVSSTVD------------SSLTLVMGDDMVKVIA-WYDNE 397
+V ++VD + S T+D L +++G D + W+
Sbjct: 82 RAVAGVERLTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHR-- 139
Query: 398 WGYSQRVVDLADIVA 412
+ ++D IV
Sbjct: 140 ---WEALLDHCHIVV 151
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 28.8 bits (65), Expect = 3.5
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 65 AQAKLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDT 103
+ +K + FG G+ F E+ I +
Sbjct: 2 SLEIIKTGLAAFGMSGQVFHAPFISTNPH--FELYKIVER 39
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
1kaq_A*
Length = 194
Score = 28.3 bits (64), Expect = 3.6
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 354 LSVCDEPLVSVD---FRCSDVSSTVD-----------SSLTLVMGDDMVKVIA-WYDNEW 398
L++ P ++ S T D L ++G DM++ + WY
Sbjct: 67 LAIQSNPSFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYK--- 123
Query: 399 GYSQRVVDLADIVA 412
+++L +
Sbjct: 124 --LDELLNLIQFIG 135
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine
dehydrogenase, structural G joint center for structural
genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Length = 327
Score = 28.7 bits (65), Expect = 3.8
Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 26/130 (20%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDS------PLEVVAINDTGGVKQASHLLKYDSTLGIF 122
+K+AI GFG +G+ +++ +V A+ D+ +
Sbjct: 3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSI--------SGDFSLV 54
Query: 123 EADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA- 181
EA T + D K I+VV D++IE + VD +I+
Sbjct: 55 EALRMKRETGMLRDDAKAIEVVR----------SADYDVLIEASVTRVDGGEGVNYIREA 104
Query: 182 -GAKKVLITA 190
K ++T+
Sbjct: 105 LKRGKHVVTS 114
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD,
nucleotidyltransferase, pyridine nucleotide biosynthesi
transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB:
3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A*
2qtm_A*
Length = 189
Score = 28.3 bits (64), Expect = 3.8
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 20/74 (27%)
Query: 354 LSVCDEPLVSVD---FRCSDVSSTVD-----------SSLTLVMGDDMVKVIA-WYDNEW 398
L+ E S+ S T D ++G DMV+ + WY+
Sbjct: 62 LATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYN--- 118
Query: 399 GYSQRVVDLADIVA 412
+ ++DL V
Sbjct: 119 --IEALLDLVTFVG 130
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative
oxidoreductase YVAA, oxidoredu PSI-2, protein structure
initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Length = 358
Score = 28.5 bits (64), Expect = 4.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 65 AQAKLKVAINGFGRIGRNFLRCWHG---RKDSPLEVVAIND 102
+ +KV I G+G G F HG ++ I
Sbjct: 2 SLDTIKVGILGYGLSGSVF----HGPLLDVLDEYQISKIMT 38
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 28.4 bits (64), Expect = 4.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 69 LKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDTGGVKQASHLLKY 115
+K+ GFG+ + L R+ LEV I D ++A+ K
Sbjct: 3 VKMGFIGFGKSANRYHLPYVMIRET--LEVKTIFDLHVNEKAAAPFKE 48
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 28.7 bits (63), Expect = 4.2
Identities = 25/194 (12%), Positives = 53/194 (27%), Gaps = 17/194 (8%)
Query: 63 VAAQAKLKVAINGFG----RIGRNFLRCWHGRKDSPLEVVAIN----DTGGVKQ--ASHL 112
++ + G G + F + +A+N D ++
Sbjct: 37 SVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDR 96
Query: 113 LKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDR 172
+ +D G A V TD + + F+
Sbjct: 97 IHFDGLKGA--ARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLIC 154
Query: 173 EGAGKHIQAGAKKVLITAPGKG--DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVK 230
GAG + G +++ + P ++ D I+NA + + F++
Sbjct: 155 LGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLP---SGDPDEINNALVLLSEIDEFMR 211
Query: 231 VLDQKFVTQLNDRI 244
D+ F +
Sbjct: 212 EQDRLFGNSDIKPL 225
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 28.4 bits (64), Expect = 4.3
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
L++ + G GRIG D+ + AI+D
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDA--ILYAISD 34
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structu genomics, PSI; 1.65A {Vibrio
parahaemolyticus}
Length = 177
Score = 27.9 bits (63), Expect = 4.5
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 26/82 (31%)
Query: 346 ADNELKGILSVCDEPLVSVDFRCSDVSSTVD--------------SSLTLVMGDDMVKVI 391
D L + D ++ +V + +T V+G D
Sbjct: 60 KDMGLSNV-QRSD-----LEQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKF 113
Query: 392 A-WYDNEWGYSQRVVDLADIVA 412
A +Y ++ + + ++A
Sbjct: 114 AKFYK-----AEEITERWTVMA 130
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 28.4 bits (64), Expect = 4.7
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 68 KLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAIND 102
+K+ + G G I + L + E V
Sbjct: 6 NIKMGMIGLGSIAQKAYLPILTKSERF--EFVGAFT 39
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 28.4 bits (64), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
LK I G G IG + LR +EVVA+ D
Sbjct: 23 TLKAGIVGIGMIGSDHLRRLANTVSG-VEVVAVCD 56
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 28.5 bits (64), Expect = 4.9
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
L++ + G G IG+ + + E+VA+ D
Sbjct: 2 SLRIGVIGTGAIGKEHINRITNKLSG-AEIVAVTD 35
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 28.4 bits (62), Expect = 5.2
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 5/61 (8%)
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFPMCA 249
A G G + ++ + A C + CL+ + + F N+ C
Sbjct: 1 AAGPGAAAARRLD---ESLSAGS--VQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQ 55
Query: 250 G 250
Sbjct: 56 N 56
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 27.9 bits (63), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 195 DIPTYVVGVNADAYKPDEP--IISNASCTTNCLAPFVKVLDQKF 236
D+P V VN + P II+N +CTT P +KVL +
Sbjct: 102 DVPLVVSEVNFERDAHRRPKGIIANPNCTTMAAMPVLKVLHDEA 145
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 27.7 bits (62), Expect = 6.9
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 9/44 (20%)
Query: 63 VAAQAKLKVAINGFGRIGRNFLRCWHGR----KDSPLEVVAIND 102
V + L+ AI G GR+G H R K +++VA
Sbjct: 3 VTTRKPLRAAIIGLGRLGER-----HARHLVNKIQGVKLVAACA 41
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 27.8 bits (63), Expect = 7.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 195 DIPTYVVGVNADAYKPDEPIISNASCTT 222
+P V VN + II+N +CTT
Sbjct: 100 WVPLVVPEVNREKIFQHRGIIANPNCTT 127
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 27.9 bits (63), Expect = 7.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 195 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
D+P V VNA A II+ +C+T + ++ + QK+
Sbjct: 103 DVPLVVPEVNAHALDAHNGIIACPNCSTIQMMVALEPVRQKW 144
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 27.8 bits (62), Expect = 7.6
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 49 QTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHG---RKDSPLEVVAI 100
S+ + + + + +AI G G+I R+ H K++ ++VA
Sbjct: 6 HHSSGVDLGTENLYFQSMSPINLAIVGVGKIVRDQ----HLPSIAKNANFKLVAT 56
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 27.7 bits (62), Expect = 7.8
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 68 KLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAINDT 103
KL++ + G G I + L D +
Sbjct: 5 KLRIGVVGLGGIAQKAWLPVLAAASDW--TLQGAWSP 39
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 27.4 bits (61), Expect = 9.4
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 68 KLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAIN 101
LK+A+ G G I + L D L + N
Sbjct: 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRN 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,337,780
Number of extensions: 398866
Number of successful extensions: 1003
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 94
Length of query: 416
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,021,377
Effective search space: 1286840640
Effective search space used: 1286840640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)