RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014890
(416 letters)
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 229 bits (584), Expect = 5e-75
Identities = 157/176 (89%), Positives = 161/176 (91%), Gaps = 13/176 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
CTTNCLAPFVKVLDQKF GIIKGTMTTTHSYTGDQRLLDASHRDLRRA
Sbjct: 1 CTTNCLAPFVKVLDQKF-------------GIIKGTMTTTHSYTGDQRLLDASHRDLRRA 47
Query: 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 339
RAA LNIVPTSTGAAKAVALVLP LKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN
Sbjct: 48 RAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 107
Query: 340 AAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
AAFRESADNELKGILSVCDEPLVS+DFRC+DVSST+DSSLT+VMGDDMVKVIAWYD
Sbjct: 108 AAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYD 163
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 225 bits (575), Expect = 1e-73
Identities = 109/176 (61%), Positives = 135/176 (76%), Gaps = 13/176 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
CTTNCLAPF KVL ++F GI++G MTT HSYT DQR+LD H+DLRRA
Sbjct: 1 CTTNCLAPFAKVLHEQF-------------GIVRGMMTTVHSYTNDQRILDLPHKDLRRA 47
Query: 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 339
RAAA +I+PT+TGAAKAVALVLP LKGKLNG+A+RVPTPNVSVVDLV ++ K+ EEVN
Sbjct: 48 RAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVN 107
Query: 340 AAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
AA + +A+ ELKGIL+ +EPLVS D+ S VSST+D+ T+V+ MVKV++WYD
Sbjct: 108 AALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYD 163
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 213 bits (545), Expect = 4e-69
Identities = 76/177 (42%), Positives = 102/177 (57%), Gaps = 14/177 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDL-RR 278
CTTNCLAP KV+ F GI++G MTT H+ T Q+ +D L R
Sbjct: 1 CTTNCLAPLAKVIHDNF-------------GIVEGLMTTVHAITATQKTVDGPSGKLWRD 47
Query: 279 ARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEV 338
R A NI+P STGAAKAV V+P L GKL G+A RVPT NVSVVDL ++ K +++
Sbjct: 48 GRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDI 107
Query: 339 NAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
+++++ LKGIL + +VS DF SST D+ + + D VK+I+WYD
Sbjct: 108 KKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYD 164
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 207 bits (527), Expect = 2e-66
Identities = 129/171 (75%), Positives = 143/171 (83%), Gaps = 3/171 (1%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
LKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK
Sbjct: 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKT 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
G ISVDGKVI+VVS+RNPVNLPWGD+GIDLVIEGTGVFVDR+GAGKH+QAGAKKVLI
Sbjct: 61 AGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCT---TNCLAPFVKVLDQKF 236
TAPGKGDIPTYVVGVN + Y + IISNAS + + ++ K+
Sbjct: 121 TAPGKGDIPTYVVGVNEEGYTHADTIISNASNEWGYSQRVVDLADIVANKW 171
Score = 29.9 bits (67), Expect = 0.39
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 389 KVIAWYDNEWGYSQRVVDLADIVANNWK 416
+I+ NEWGYSQRVVDLADIVAN W+
Sbjct: 145 TIISNASNEWGYSQRVVDLADIVANKWQ 172
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 203 bits (517), Expect = 5e-65
Identities = 93/176 (52%), Positives = 113/176 (64%), Gaps = 14/176 (7%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRR 278
SCTTNCLAP VK L+ K G+ G MTT H+YT +Q L D H DLRR
Sbjct: 1 SCTTNCLAPLVKPLNDKL-------------GLQDGLMTTVHAYTNNQVLTDVYHEDLRR 47
Query: 279 ARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEV 338
AR+A ++++PT TGAA AV VLP L GKLNG A+RVPT NVS+VDL + T EEV
Sbjct: 48 ARSATMSMIPTKTGAAAAVGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEV 107
Query: 339 NAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWY 394
N + +++ ELKGIL EPLVSVD+ SSTVD+SLT V G +VKV +WY
Sbjct: 108 NGILKAASEGELKGILDYNTEPLVSVDYNHDPASSTVDASLTKVSG-RLVKVSSWY 162
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 195 bits (496), Expect = 1e-61
Identities = 83/164 (50%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
+VAINGFGRIGR R + RK+ +EVVAIND K +HLLKYDS F V+
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVE-Y 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + VDGK I+V + +P LPW DLG+D VIE TGVF +RE A H+QAGAKKV+IT
Sbjct: 61 TENSLIVDGKEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIIT 120
Query: 190 APGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLD 233
AP KG+ T V+G N D KP+ IIS AS V L+
Sbjct: 121 APAKGEDITVVIGCNEDQLKPEHTIISCASNEYGYSNRVVDTLE 164
>d2g82a2 d.81.1.1 (A:149-310) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 162
Score = 193 bits (491), Expect = 5e-61
Identities = 93/176 (52%), Positives = 120/176 (68%), Gaps = 14/176 (7%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
CTTN LAP +KVL++ F G+ K MTT HSYT DQRLLD H+DLRRA
Sbjct: 1 CTTNSLAPVMKVLEEAF-------------GVEKALMTTVHSYTNDQRLLDLPHKDLRRA 47
Query: 280 RAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVN 339
RAAA+NI+PT+TGAAKA ALVLP+LKG+ +G+ALRVPT S+ D+ + ++ AEEVN
Sbjct: 48 RAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVN 107
Query: 340 AAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYD 395
AA + +A+ LKGIL+ ++ +V D SS VD+ LT +G +MVKV AWYD
Sbjct: 108 AALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYD 162
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Length = 166
Score = 185 bits (470), Expect = 6e-58
Identities = 73/164 (44%), Positives = 101/164 (61%), Gaps = 4/164 (2%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R R D +E+VAIND +++LKYDST G F+ V+
Sbjct: 2 IKVGINGFGRIGRIVFRAAQKRSD--IEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE- 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
V + V+GK I+V + R+P NL W ++G+D+V E TG+F+ E A KHI AGAKKV++
Sbjct: 59 VKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVL 232
T P K + P +V G N D Y + I+SNAS T + ++
Sbjct: 119 TGPSKDNTPMFVKGANFDKYAGQD-IVSNASNETGYSNKVLDLI 161
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 185 bits (471), Expect = 6e-58
Identities = 64/166 (38%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADV 126
K+KV +NGFGRIGR R +++VAIND + ++ +YDST G F V
Sbjct: 1 KVKVGVNGFGRIGRLVTRAAFNSGK--VDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTV 58
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
K + ++G I + R+P + WGD G + V+E TGVF E AG H+Q GAK+V
Sbjct: 59 K-AENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRV 117
Query: 187 LITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVL 232
+I+AP P +V+GVN + Y IISNAS V ++
Sbjct: 118 IISAPSADA-PMFVMGVNHEKYDNSLKIISNASNEFGYSNRVVDLM 162
>d1k3ta2 d.81.1.1 (A:165-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 169
Score = 178 bits (453), Expect = 2e-55
Identities = 80/181 (44%), Positives = 109/181 (60%), Gaps = 17/181 (9%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLL-DASHRDLR 277
SCTTNCLAP V VL + G+ G MTT HSYT Q+ + S +D R
Sbjct: 1 SCTTNCLAPIVHVLV-------KEGF-----GVQTGLMTTIHSYTATQKTVDGVSVKDWR 48
Query: 278 RARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 337
RAAA+NI+P++TGAAKAV +V+P+ +GKL G++ RVPTP+VSVVDL ++ T +E
Sbjct: 49 GGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQE 108
Query: 338 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMG----DDMVKVIAW 393
++AA + ++ +KGIL DE LVS DF + SS DS TL K+++W
Sbjct: 109 IDAALKRASKTYMKGILGYTDEELVSADFINDNRSSIYDSKATLQNNLPKERRFFKIVSW 168
Query: 394 Y 394
Y
Sbjct: 169 Y 169
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 178 bits (453), Expect = 2e-55
Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR LR + +VVA+ND ++ ++ KYDST G+F+ +VK
Sbjct: 2 KIGINGFGRIGRLVLRAAL---EMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVK- 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I V + P N+PW G + ++E TGVF E A H + GAKKV+I
Sbjct: 58 AEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
+AP D P +V GVN + Y D ++SNAS + ++
Sbjct: 118 SAPSA-DAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIKHMQ 164
>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}
Length = 190
Score = 172 bits (438), Expect = 7e-53
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 12/189 (6%)
Query: 68 KLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEA 124
+KV INGFGRIGR + C G + ++VVA+ D + ++ ++YD+ G F+
Sbjct: 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKY 61
Query: 125 DVKPVG-------TDGISVDGKVIQVVS-NRNPVNLPWGDLGIDLVIEGTGVFVDREGAG 176
+V D + V+G I V RNP +LPWG LG++ VIE TG+F + A
Sbjct: 62 EVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAE 121
Query: 177 KHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQK 235
H++ GA+KV+I+AP G T V+GVN Y P E ++SNA V ++
Sbjct: 122 GHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNADNEWGYSHRVVDLVRHM 181
Query: 236 FVTQLNDRI 244
+ R+
Sbjct: 182 ASKDRSARL 190
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 165 bits (418), Expect = 4e-50
Identities = 77/165 (46%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
KV INGFGRIGRN R D +EVVA+ND +HLLKYDS G + V
Sbjct: 3 KVGINGFGRIGRNVFRAALKNPD--IEVVAVNDLTDANTLAHLLKYDSVHGRLD-AEVSV 59
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
+ + V+GK I V + R+P NL WG++G+D+V+E TG F RE A KH++AGAKKV+I+
Sbjct: 60 NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIIS 119
Query: 190 APGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLD 233
AP K + T V+GVN D Y P +ISNAS T V +
Sbjct: 120 APAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVDLAA 164
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 158 bits (401), Expect = 1e-47
Identities = 77/171 (45%), Positives = 102/171 (59%), Gaps = 8/171 (4%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP 128
+KV INGFGRIGR R H R +EV IND K +HLLKYDS F +V
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRG---VEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAY 57
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ VDGK I+ + ++P +PW + G+ +VIE TGVF D + A H++ GAKKV+I
Sbjct: 58 DDQY-LYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116
Query: 189 TAPGKGDIPTYVVGVNADAYKPDE-PIISNASCT---TNCLAPFVKVLDQK 235
TAP KG+ T V+GVN +AY P IISNAS N +A V+++ +K
Sbjct: 117 TAPAKGEDITIVMGVNHEAYDPSRHHIISNASNEWGYANRVADLVELVLRK 167
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 158 bits (400), Expect = 1e-47
Identities = 69/168 (41%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGG-VKQASHLLKYDSTLGIFEADVKP 128
K+ INGFGRIGR R GRKD +EVVAIND + +LLKYDS G F
Sbjct: 2 KLGINGFGRIGRLVFRAAFGRKD--IEVVAINDPFMDLNHLCYLLKYDSVHGQFP-CEVT 58
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
+ + K + V + ++P +PWG +D+V E TGVF+ +E A H++ GAKKV++
Sbjct: 59 HADGFLLIGEKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 118
Query: 189 TAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
+AP K D P YV+G+N Y + I+SNAS +VLD
Sbjct: 119 SAPPKDDTPIYVMGINHHQYDTKQLIVSNASN---EWGYSNRVLDLAV 163
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 151 bits (383), Expect = 6e-45
Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 17/170 (10%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL-GIFEADVKP 128
VAING+G +G+ + D ++V+ ++ T +A LK L VK
Sbjct: 3 AVAINGYGTVGKRVADAIAQQDD--MKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKL 60
Query: 129 VGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 188
GI V G + D+VI+ T + + + + G K +
Sbjct: 61 FEKAGIEVAG------------TVDDMLDEADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ 108
Query: 189 TAPGKGDIP-TYVVGVNADAY-KPDEPIISNASCTTNCLAPFVKVLDQKF 236
DI ++ N + D + + + +++ + K+
Sbjct: 109 GGEKHEDIGLSFNSLSNYEESYGKDYTRVVIVPENVDAVRAILEMEEDKY 158
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 147 bits (371), Expect = 3e-43
Identities = 77/197 (39%), Positives = 103/197 (52%), Gaps = 30/197 (15%)
Query: 69 LKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
++VAING+GRIGRN LR + K +E+VAIND G K +HL +YD+ G F V
Sbjct: 2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVS 61
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V + V+G I+V +NRNP LPWG L +D+V+E TG F +E AG HI+ GAKKV+
Sbjct: 62 -VNGSYMVVNGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVI 120
Query: 188 ITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFVTQLNDRIFP 246
I+APG D T V GVN K + +ISNA ++
Sbjct: 121 ISAPGGADVDATVVYGVNHGTLKSTDTVISNAD--------------NEW---------- 156
Query: 247 MCAGIIKGTMTTTHSYT 263
G + TT +
Sbjct: 157 ---GFSNRMLDTTVALM 170
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 141 bits (357), Expect = 3e-41
Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 17/172 (9%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLG-IFEADV 126
K+KV +NG+G IG+ + D +E++ I T +A + + E +
Sbjct: 2 KVKVGVNGYGTIGKRVAYAVTKQDD--MELIGITKTKPDFEAYRAKELGIPVYAASEEFI 59
Query: 127 KPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKV 186
+G V L +D++++ T + + + +AG K +
Sbjct: 60 PRFEKEGFEVA------------GTLNDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAI 107
Query: 187 LITAPGKGDI-PTYVVGVN-ADAYKPDEPIISNASCTTNCLAPFVKVLDQKF 236
++V N A + + + + ++ D+
Sbjct: 108 FQGGEKADVAEVSFVAQANYEAALGKNYVRVVVIPENIDAIRAMFELADKWD 159
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 134 bits (338), Expect = 3e-38
Identities = 28/195 (14%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 70 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 129
VA+NG+G IG+ + D +++V + T +A + + + + +K
Sbjct: 3 NVAVNGYGTIGKRVADAIIKQPD--MKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKF 60
Query: 130 GTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 189
GI V + D+V++ T V + ++Q + +
Sbjct: 61 EESGIPVA------------GTVEDLIKTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQ 107
Query: 190 APGKGDI--PTYVVGVNADAYKPDE--PIISNASCTTNCLAPFVKVLD----QKFVTQLN 241
K ++ ++ N + + ++S + + + + + N
Sbjct: 108 GGEKAEVADISFSALCNYNEALGKKYIRVVSESIVVPENIDAIRASMKLMSAEDSMRITN 167
Query: 242 DRIFPMCAGIIKGTM 256
+ + GI+KG +
Sbjct: 168 ESL-----GILKGYL 177
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 119 bits (301), Expect = 4e-33
Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 29/187 (15%)
Query: 220 CTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRRA 279
C T L + +++ + K T + ++++
Sbjct: 1 CNTTALLRTICTVNKVS-------------KVEKVRATIVRRAADQK--------EVKKG 39
Query: 280 RAAALNIVPTSTGAA--KAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 337
+L P + + K V V+ L + +A+ PT + + + + + K ++
Sbjct: 40 PINSLVPDPATVPSHHAKDVNSVIRNLD--IATMAVIAPTTLMHMHFINITLKDKVEKKD 97
Query: 338 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
+ + + L + V+ D ++ D + V D+E
Sbjct: 98 ILSVLENTPRIVLISSKYDAEATAELVEVARDLKRDRNDIPEVMIFS-DSIYVK---DDE 153
Query: 398 WGYSQRV 404
V
Sbjct: 154 VMLMYAV 160
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 115 bits (289), Expect = 2e-31
Identities = 26/181 (14%), Positives = 56/181 (30%), Gaps = 34/181 (18%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRR 278
SC T L +K L F GI K +
Sbjct: 1 SCNTTGLCRTLKPLHDSF-------------GIKKVRAVIVRRGADPAQ----------V 37
Query: 279 ARAAALNIVPTSTGAAKAVA-LVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEE 337
++ I+P V L ++ +A+ VPT + +++V+V + ++
Sbjct: 38 SKGPINAIIPNPPKLPSHHGPDVKTVLDINIDTMAVIVPTTLMHQHNVMVEVEETPTVDD 97
Query: 338 VNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNE 397
+ F ++ L ++ L S + + +D+ ++ W ++
Sbjct: 98 IIDVFEDTPRVILIS----AEDGLTST---AEIMEYAKELG---RSRNDLFEIPVWRESI 147
Query: 398 W 398
Sbjct: 148 T 148
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 35.7 bits (81), Expect = 0.004
Identities = 5/35 (14%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
++++ + G I R R H + + +
Sbjct: 1 QIRIGVMGCADIARKVSRAIHLAPN--ATISGVAS 33
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 34.5 bits (78), Expect = 0.011
Identities = 9/58 (15%), Positives = 18/58 (31%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEAD 125
K V + G GR G LR + + + + + ++ S +
Sbjct: 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQ 64
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 34.1 bits (77), Expect = 0.016
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
++VAI G+G +GR+ + + D +++V I
Sbjct: 3 NIRVAIVGYGNLGRSVEKLIAKQPD--MDLVGIFS 35
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 32.4 bits (72), Expect = 0.066
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 11/76 (14%)
Query: 28 NSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRN-FLRC 86
+A+LP G + T A R + + AI G G+ N L
Sbjct: 1 QAATLPAG--------ASQVPTTPAGRPMPYAIRPMPEDRRFGYAIVGLGKYALNQILPG 52
Query: 87 WHGRKDSPLEVVAIND 102
+ G + + A+
Sbjct: 53 FAGCQH--SRIEALVS 66
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 31.6 bits (71), Expect = 0.088
Identities = 35/157 (22%), Positives = 51/157 (32%), Gaps = 25/157 (15%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 127
KLKVAI G G IG + + R LE+ A+ G+ AS L +G+
Sbjct: 4 KLKVAIIGSGNIGTDLMIK-VLRNAKYLEMGAM---VGIDAASDGLARAQRMGVTTTY-- 57
Query: 128 PVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVL 187
V+G + ID V + T + QA L
Sbjct: 58 ------AGVEGLIKL-----------PEFADIDFVFDATSASAHVQNEALLRQAKPGIRL 100
Query: 188 ITAPGKGDIPTYVVGVNADA--YKPDEPIISNASCTT 222
I P V VN + K + +++ A
Sbjct: 101 IDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTYAGNLD 137
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 31.4 bits (70), Expect = 0.11
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 68 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND 102
K+++ I G G R E+ A+
Sbjct: 3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS 37
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 29.8 bits (67), Expect = 0.30
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 25/132 (18%)
Query: 219 SCTTNCLAPFVKVLDQKFVTQLNDRIFPMCAGIIKGTMTTTHSYTGDQRLLDASHRDLRR 278
SC T L + + + + M + D
Sbjct: 1 SCNTTGLVRTLSAIREYA-------------DYVYAVMIRRAADPND------------T 35
Query: 279 ARAAALNIVPTSTGAAKAVALVLPALKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEV 338
R I PT + V + + +A VPT + V ++V++ K ++V
Sbjct: 36 KRGPINAIKPTVEVPSHHGPDVQTVIPINIETMAFVVPTTLMHVHSVMVELKKPLTKDDV 95
Query: 339 NAAFRESADNEL 350
F + L
Sbjct: 96 IDIFENTTRVLL 107
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 29.6 bits (65), Expect = 0.48
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 68 KLKVAINGFGRIGRNF-LRCWHGRKDSPLEVVAIND 102
KL++ + G G I + L D +
Sbjct: 1 KLRIGVVGLGGIAQKAWLPVLAAASD--WTLQGAWS 34
>d2icha1 b.176.1.1 (A:24-351) AttH-related protein NE1406
{Nitrosomonas europaea [TaxId: 915]}
Length = 328
Score = 28.5 bits (63), Expect = 1.6
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 366 FRCSDVSSTVDSSLTLVMGDDMVKVIAWYDNEWG 399
+ S+ V + D V AW D EW
Sbjct: 161 YYYSEPHLQVSGIINRQGEDIPVTGTAWLDREWS 194
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus
niger), endo-polygalacturonase I [TaxId: 5061]}
Length = 336
Score = 27.8 bits (61), Expect = 2.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 158 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI 196
G + EGT F +E G I+ G K + +T I
Sbjct: 42 GSTITFEGTTSFGYKEWKGPLIRFGGKDLTVTMADGAVI 80
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 26.4 bits (57), Expect = 3.5
Identities = 14/116 (12%), Positives = 32/116 (27%), Gaps = 23/116 (19%)
Query: 70 KVAINGFGRIGRNFLR----------CWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTL 119
+ A+ G GR G + ++ ++ + + A+ +L
Sbjct: 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATE-ENELLSL 60
Query: 120 GIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG------------DLGIDLVI 163
GI + V + ++ + W +G D +I
Sbjct: 61 GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRII 116
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 66 QAKLKVAINGF-GRIGRNFLRCWHGRKDSPLEVVAIND 102
A ++VAI G GR+GR ++ +++ A +
Sbjct: 2 DANIRVAIAGAGGRMGRQLIQA--ALALEGVQLGAALE 37
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 26.7 bits (58), Expect = 4.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 69 LKVAINGFGRIG-RNFLRCWHGRKDSPLEVVAIND 102
LK+A+ G G I + +L D L + N
Sbjct: 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP 36
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 25.4 bits (55), Expect = 8.2
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 69 LKVAINGFGRIGRNFLRCWHGRKD 92
+ V I G G IG+ + + K
Sbjct: 3 MTVLIIGMGNIGKKLVELGNFEKI 26
>d1xo8a_ b.1.25.1 (A:) Putative dessication related protein LEA14
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 25.5 bits (56), Expect = 8.7
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 125 DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 184
D+K V D + KV V+N ++P ++ G + + ++A
Sbjct: 30 DLKDVNRDSVEYLAKV--SVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDM 87
Query: 185 KVL 187
L
Sbjct: 88 TAL 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,482,966
Number of extensions: 67760
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 39
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)