Query 014891
Match_columns 416
No_of_seqs 259 out of 809
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 01:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0396 Uncharacterized conser 100.0 3.6E-91 7.8E-96 675.6 30.7 377 38-416 2-389 (389)
2 KOG2817 Predicted E3 ubiquitin 100.0 3.1E-64 6.7E-69 493.6 26.4 271 144-415 117-394 (394)
3 COG5109 Uncharacterized conser 100.0 1.1E-40 2.4E-45 316.2 21.1 268 145-415 102-396 (396)
4 PF10607 CLTH: CTLH/CRA C-term 100.0 8.9E-32 1.9E-36 237.9 13.4 142 181-322 2-145 (145)
5 KOG2659 LisH motif-containing 99.9 2.6E-25 5.6E-30 206.8 16.7 176 142-318 25-204 (228)
6 smart00757 CRA CT11-RanBPM. pr 99.7 2.1E-17 4.6E-22 136.5 7.3 94 233-326 1-98 (99)
7 PF13445 zf-RING_UBOX: RING-ty 99.4 1.4E-13 3.1E-18 96.5 3.2 42 358-399 1-43 (43)
8 smart00668 CTLH C-terminal to 99.3 5.9E-12 1.3E-16 93.7 5.6 56 181-236 2-57 (58)
9 smart00504 Ubox Modified RING 99.0 6.5E-10 1.4E-14 84.1 4.1 53 356-414 2-54 (63)
10 PF04564 U-box: U-box domain; 98.7 1.5E-08 3.2E-13 79.5 3.5 55 354-413 3-57 (73)
11 PF04641 Rtf2: Rtf2 RING-finge 98.5 8.5E-08 1.8E-12 93.2 4.2 60 351-414 109-169 (260)
12 PF11789 zf-Nse: Zinc-finger o 98.2 7.9E-07 1.7E-11 66.3 3.1 44 355-402 11-55 (57)
13 KOG3113 Uncharacterized conser 98.2 7.5E-07 1.6E-11 83.9 3.3 58 351-413 107-165 (293)
14 PLN03208 E3 ubiquitin-protein 97.9 8.5E-06 1.8E-10 75.0 4.5 58 354-414 17-87 (193)
15 PF15227 zf-C3HC4_4: zinc fing 97.9 7.2E-06 1.6E-10 57.3 3.0 41 358-401 1-42 (42)
16 KOG0293 WD40 repeat-containing 97.9 8.5E-05 1.8E-09 74.8 11.5 175 142-322 16-216 (519)
17 smart00667 LisH Lissencephaly 97.8 4.4E-05 9.5E-10 49.9 4.6 32 142-173 2-33 (34)
18 PF14634 zf-RING_5: zinc-RING 97.8 2.3E-05 4.9E-10 55.2 3.0 43 358-403 2-44 (44)
19 PF08513 LisH: LisH; InterPro 97.7 5.2E-05 1.1E-09 47.8 4.1 27 144-170 1-27 (27)
20 PF13639 zf-RING_2: Ring finge 97.7 2.9E-05 6.2E-10 54.5 3.1 42 357-401 2-43 (44)
21 KOG0320 Predicted E3 ubiquitin 97.7 2.5E-05 5.5E-10 70.3 2.8 60 352-415 128-187 (187)
22 KOG0978 E3 ubiquitin ligase in 97.3 6.2E-05 1.3E-09 81.2 0.5 61 350-415 638-698 (698)
23 PF00097 zf-C3HC4: Zinc finger 97.3 0.00039 8.5E-09 47.8 3.9 40 358-401 1-41 (41)
24 TIGR00599 rad18 DNA repair pro 97.3 0.0002 4.4E-09 73.2 3.5 66 343-414 14-79 (397)
25 PF13923 zf-C3HC4_2: Zinc fing 97.1 0.00063 1.4E-08 46.5 3.4 38 358-401 1-39 (39)
26 smart00184 RING Ring finger. E 97.0 0.00069 1.5E-08 44.7 3.1 39 358-401 1-39 (39)
27 cd00162 RING RING-finger (Real 96.9 0.00099 2.1E-08 45.6 3.4 43 358-404 2-44 (45)
28 KOG0823 Predicted E3 ubiquitin 96.8 0.0014 3E-08 61.7 4.5 61 351-414 43-103 (230)
29 TIGR00570 cdk7 CDK-activating 96.8 0.0011 2.4E-08 65.5 3.7 42 372-415 22-63 (309)
30 KOG3039 Uncharacterized conser 96.7 0.0015 3.2E-08 61.9 3.6 59 351-412 216-276 (303)
31 PF13920 zf-C3HC4_3: Zinc fing 96.4 0.0042 9E-08 44.7 3.9 44 357-406 4-48 (50)
32 PHA02929 N1R/p28-like protein; 96.3 0.0038 8.3E-08 59.8 3.6 33 371-406 195-227 (238)
33 KOG1734 Predicted RING-contain 96.0 0.0023 4.9E-08 61.4 0.7 61 345-408 216-283 (328)
34 KOG0317 Predicted E3 ubiquitin 95.8 0.015 3.2E-07 56.6 5.5 66 342-413 226-291 (293)
35 KOG2164 Predicted E3 ubiquitin 95.7 0.0078 1.7E-07 62.6 3.0 57 356-415 187-245 (513)
36 PHA02926 zinc finger-like prot 95.5 0.013 2.8E-07 55.0 3.6 44 371-414 192-238 (242)
37 KOG2879 Predicted E3 ubiquitin 95.0 0.019 4.2E-07 55.4 3.3 59 353-414 237-295 (298)
38 KOG2177 Predicted E3 ubiquitin 94.9 0.011 2.3E-07 56.7 1.2 46 352-403 10-55 (386)
39 KOG1477 SPRY domain-containing 94.8 0.011 2.3E-07 62.3 1.1 181 148-335 254-458 (469)
40 COG5243 HRD1 HRD ubiquitin lig 94.8 0.026 5.6E-07 56.6 3.6 55 352-409 284-348 (491)
41 PF12678 zf-rbx1: RING-H2 zinc 94.6 0.039 8.4E-07 43.1 3.6 32 368-402 42-73 (73)
42 KOG0287 Postreplication repair 93.7 0.019 4.1E-07 56.9 -0.1 66 344-415 12-77 (442)
43 PF14447 Prok-RING_4: Prokaryo 92.9 0.068 1.5E-06 39.3 1.9 35 371-410 20-54 (55)
44 KOG2979 Protein involved in DN 92.6 0.067 1.5E-06 51.3 2.0 45 357-404 178-222 (262)
45 PF12861 zf-Apc11: Anaphase-pr 92.4 0.14 3.1E-06 41.2 3.3 42 368-409 44-85 (85)
46 COG5540 RING-finger-containing 92.4 0.096 2.1E-06 51.3 2.7 49 356-406 324-372 (374)
47 COG5432 RAD18 RING-finger-cont 92.1 0.068 1.5E-06 52.0 1.3 64 344-413 14-77 (391)
48 PF02891 zf-MIZ: MIZ/SP-RING z 91.1 0.27 5.9E-06 35.5 3.3 44 356-403 3-49 (50)
49 KOG4628 Predicted E3 ubiquitin 90.8 0.16 3.4E-06 51.3 2.4 49 356-406 230-278 (348)
50 COG5574 PEX10 RING-finger-cont 90.1 0.19 4.2E-06 48.4 2.3 50 356-410 216-266 (271)
51 KOG0828 Predicted E3 ubiquitin 89.3 0.2 4.4E-06 52.0 1.9 59 345-405 548-633 (636)
52 smart00744 RINGv The RING-vari 89.0 0.61 1.3E-05 33.5 3.7 44 357-402 1-49 (49)
53 KOG0826 Predicted E3 ubiquitin 89.0 0.21 4.7E-06 49.4 1.8 54 357-415 302-355 (357)
54 KOG0802 E3 ubiquitin ligase [P 85.9 0.49 1.1E-05 50.9 2.5 50 354-406 290-341 (543)
55 PF04494 TFIID_90kDa: WD40 ass 84.8 3.3 7.2E-05 36.4 6.8 48 215-262 38-85 (142)
56 smart00531 TFIIE Transcription 84.2 0.82 1.8E-05 40.6 2.7 34 375-409 104-137 (147)
57 PF13805 Pil1: Eisosome compon 83.9 9.4 0.0002 37.4 10.0 113 13-125 14-135 (271)
58 PF12126 DUF3583: Protein of u 83.8 33 0.00071 33.9 13.5 115 87-234 36-155 (324)
59 KOG1333 Uncharacterized conser 82.9 20 0.00043 33.6 11.1 172 144-322 6-189 (241)
60 COG4391 Uncharacterized protei 82.6 0.61 1.3E-05 35.0 1.0 18 391-408 44-61 (62)
61 cd08044 TAF5_NTD2 TAF5_NTD2 is 81.8 3 6.4E-05 36.3 5.2 65 200-264 12-76 (133)
62 KOG0275 Conserved WD40 repeat- 81.5 13 0.00027 37.4 9.8 138 144-294 8-151 (508)
63 PF04136 Sec34: Sec34-like fam 80.9 42 0.0009 30.1 14.5 37 195-231 103-139 (157)
64 PF03966 Trm112p: Trm112p-like 79.7 1.7 3.6E-05 33.3 2.6 18 392-409 50-67 (68)
65 KOG1814 Predicted E3 ubiquitin 79.5 1.5 3.2E-05 45.0 2.8 61 350-410 179-246 (445)
66 COG5222 Uncharacterized conser 77.3 1.5 3.3E-05 43.0 2.1 43 356-403 275-318 (427)
67 KOG1645 RING-finger-containing 77.2 0.91 2E-05 46.4 0.6 48 366-414 17-64 (463)
68 PF04710 Pellino: Pellino; In 76.8 0.79 1.7E-05 46.7 0.0 48 368-415 356-411 (416)
69 KOG4185 Predicted E3 ubiquitin 73.3 3.1 6.7E-05 41.0 3.2 50 354-405 2-54 (296)
70 PHA01750 hypothetical protein 72.6 22 0.00047 27.2 6.7 49 52-111 25-74 (75)
71 PF05605 zf-Di19: Drought indu 70.8 1.1 2.3E-05 32.7 -0.6 16 395-410 2-17 (54)
72 PF03962 Mnd1: Mnd1 family; I 69.7 67 0.0014 29.7 11.0 121 49-177 58-187 (188)
73 PF07889 DUF1664: Protein of u 69.5 34 0.00073 29.7 8.3 28 56-83 38-65 (126)
74 PF10607 CLTH: CTLH/CRA C-term 69.3 32 0.00069 29.7 8.4 58 149-207 7-67 (145)
75 COG5152 Uncharacterized conser 68.7 2.5 5.3E-05 39.3 1.2 44 356-405 197-240 (259)
76 KOG1002 Nucleotide excision re 68.5 3.2 6.9E-05 43.9 2.1 54 353-409 534-589 (791)
77 PF14835 zf-RING_6: zf-RING of 68.4 1.1 2.4E-05 34.1 -0.9 48 356-411 8-56 (65)
78 COG5175 MOT2 Transcriptional r 67.9 4.5 9.8E-05 40.5 2.9 56 357-414 16-72 (480)
79 PF14712 Snapin_Pallidin: Snap 67.4 51 0.0011 26.3 8.7 76 49-131 13-91 (92)
80 PF06160 EzrA: Septation ring 67.1 1.9E+02 0.0042 31.3 16.3 47 182-228 259-305 (560)
81 PF10367 Vps39_2: Vacuolar sor 66.5 2 4.4E-05 35.1 0.2 17 370-386 92-108 (109)
82 KOG0883 Cyclophilin type, U bo 64.9 3.9 8.4E-05 41.7 1.8 69 344-413 90-159 (518)
83 PF14570 zf-RING_4: RING/Ubox 64.2 11 0.00023 27.2 3.4 47 358-406 1-48 (48)
84 PF04100 Vps53_N: Vps53-like, 64.0 1.8E+02 0.0039 29.9 16.6 60 54-113 25-84 (383)
85 KOG2910 Uncharacterized conser 64.0 1.3E+02 0.0027 28.1 11.5 78 145-247 40-117 (209)
86 COG1579 Zn-ribbon protein, pos 63.9 6.7 0.00014 37.8 3.2 30 376-406 203-232 (239)
87 KOG1940 Zn-finger protein [Gen 61.5 5.3 0.00011 39.2 2.0 45 356-403 159-204 (276)
88 KOG1493 Anaphase-promoting com 60.3 3.6 7.8E-05 32.4 0.5 43 367-409 41-84 (84)
89 PF10602 RPN7: 26S proteasome 60.3 1.3E+02 0.0029 27.2 15.9 105 145-250 37-144 (177)
90 PF09723 Zn-ribbon_8: Zinc rib 60.1 1.4 3E-05 30.6 -1.6 26 374-403 9-34 (42)
91 KOG4159 Predicted E3 ubiquitin 60.0 5.9 0.00013 41.0 2.2 48 353-406 82-129 (398)
92 PF14353 CpXC: CpXC protein 60.0 7.8 0.00017 33.2 2.7 26 383-408 26-51 (128)
93 KOG1941 Acetylcholine receptor 59.7 4.5 9.8E-05 41.3 1.3 47 356-403 366-413 (518)
94 COG1322 Predicted nuclease of 59.6 83 0.0018 33.2 10.6 72 89-160 127-215 (448)
95 PF04641 Rtf2: Rtf2 RING-finge 59.0 13 0.00029 36.0 4.4 63 347-415 26-93 (260)
96 KOG0824 Predicted E3 ubiquitin 58.8 5.5 0.00012 39.4 1.6 38 369-408 18-55 (324)
97 KOG1785 Tyrosine kinase negati 58.3 6.1 0.00013 40.5 1.9 47 366-413 376-423 (563)
98 PF10276 zf-CHCC: Zinc-finger 58.1 4.8 0.0001 27.8 0.8 12 394-405 28-39 (40)
99 PF00096 zf-C2H2: Zinc finger, 58.0 4.7 0.0001 23.5 0.7 13 396-408 1-13 (23)
100 PF09398 FOP_dimer: FOP N term 56.7 21 0.00045 28.6 4.3 33 143-175 18-50 (81)
101 KOG0883 Cyclophilin type, U bo 56.5 9.7 0.00021 39.0 3.0 58 344-414 36-93 (518)
102 KOG0311 Predicted E3 ubiquitin 55.9 2.3 5E-05 42.8 -1.5 56 342-405 33-89 (381)
103 PF13719 zinc_ribbon_5: zinc-r 55.3 7.3 0.00016 26.2 1.3 16 391-406 21-36 (37)
104 KOG2462 C2H2-type Zn-finger pr 54.9 11 0.00023 36.9 2.9 74 330-407 162-255 (279)
105 KOG2114 Vacuolar assembly/sort 54.3 7.4 0.00016 43.5 1.9 29 371-405 853-882 (933)
106 PF11221 Med21: Subunit 21 of 54.1 1.5E+02 0.0033 26.0 10.7 75 57-131 65-142 (144)
107 PF06248 Zw10: Centromere/kine 54.0 1.6E+02 0.0034 32.1 12.0 32 182-213 110-141 (593)
108 PF09538 FYDLN_acid: Protein o 53.5 7.5 0.00016 32.8 1.4 15 394-408 25-39 (108)
109 KOG0825 PHD Zn-finger protein 53.3 4.6 9.9E-05 44.7 0.1 76 331-411 98-176 (1134)
110 PF01601 Corona_S2: Coronaviru 53.1 1E+02 0.0022 33.5 10.0 113 48-168 239-356 (610)
111 PF13913 zf-C2HC_2: zinc-finge 52.5 3 6.4E-05 25.6 -0.9 16 395-410 2-17 (25)
112 TIGR01837 PHA_granule_1 poly(h 52.3 1.5E+02 0.0032 25.3 10.8 35 69-103 20-54 (118)
113 KOG2034 Vacuolar sorting prote 52.0 6.8 0.00015 43.9 1.2 27 144-170 531-557 (911)
114 PF04710 Pellino: Pellino; In 51.3 5 0.00011 41.1 0.0 42 366-407 298-340 (416)
115 KOG2104 Nuclear transport fact 51.1 30 0.00065 29.6 4.6 21 280-301 3-23 (126)
116 KOG3039 Uncharacterized conser 51.1 11 0.00023 36.3 2.2 32 353-387 41-72 (303)
117 PF10915 DUF2709: Protein of u 50.9 19 0.0004 33.5 3.6 52 350-415 82-133 (238)
118 PF02591 DUF164: Putative zinc 50.9 15 0.00033 26.8 2.6 30 374-404 26-55 (56)
119 PRK11032 hypothetical protein; 50.9 1.2E+02 0.0026 27.4 8.8 16 150-165 104-119 (160)
120 PF09755 DUF2046: Uncharacteri 50.8 1.3E+02 0.0029 30.0 9.8 87 46-132 23-120 (310)
121 PF13894 zf-C2H2_4: C2H2-type 50.3 7.8 0.00017 22.2 0.8 13 396-408 1-13 (24)
122 KOG3800 Predicted E3 ubiquitin 50.3 12 0.00026 36.8 2.4 36 374-411 21-56 (300)
123 cd00350 rubredoxin_like Rubred 49.8 5.4 0.00012 26.1 -0.0 21 374-403 5-25 (33)
124 PF13465 zf-H2C2_2: Zinc-finge 49.6 8.7 0.00019 23.6 0.9 15 392-406 11-25 (26)
125 KOG0827 Predicted E3 ubiquitin 49.4 13 0.00029 38.0 2.6 28 375-402 25-52 (465)
126 PF03938 OmpH: Outer membrane 49.0 1.8E+02 0.0039 25.3 12.1 71 39-109 25-96 (158)
127 PF07303 Occludin_ELL: Occludi 48.7 1.6E+02 0.0034 24.5 8.8 66 64-131 25-93 (101)
128 PF12895 Apc3: Anaphase-promot 48.5 79 0.0017 24.3 6.6 50 189-244 34-83 (84)
129 KOG3647 Predicted coiled-coil 48.5 1.2E+02 0.0025 29.9 8.7 69 91-159 110-190 (338)
130 KOG2659 LisH motif-containing 47.3 69 0.0015 30.6 7.0 65 146-210 66-133 (228)
131 PF14559 TPR_19: Tetratricopep 47.1 80 0.0017 22.8 6.1 65 191-262 2-66 (68)
132 PF07139 DUF1387: Protein of u 46.6 2.6E+02 0.0057 27.9 11.1 41 90-130 215-255 (302)
133 COG2835 Uncharacterized conser 46.1 16 0.00035 27.5 2.0 16 395-410 26-41 (60)
134 smart00782 PhnA_Zn_Ribbon PhnA 45.7 12 0.00026 26.8 1.2 37 329-365 7-46 (47)
135 KOG3230 Vacuolar assembly/sort 44.3 2.7E+02 0.006 26.1 11.3 25 49-73 8-35 (224)
136 PF06676 DUF1178: Protein of u 44.2 18 0.00039 32.3 2.4 28 375-404 9-41 (148)
137 TIGR02552 LcrH_SycD type III s 44.1 1.8E+02 0.0039 23.9 8.8 58 148-208 55-113 (135)
138 PF13878 zf-C2H2_3: zinc-finge 44.0 13 0.00028 25.6 1.2 17 394-410 12-28 (41)
139 PHA02825 LAP/PHD finger-like p 43.8 22 0.00047 32.1 2.8 35 374-409 23-62 (162)
140 KOG3161 Predicted E3 ubiquitin 43.6 8.5 0.00018 41.7 0.3 22 368-389 25-46 (861)
141 PF12660 zf-TFIIIC: Putative z 43.3 3.7 7.9E-05 34.0 -2.0 32 350-381 35-66 (99)
142 PF14255 Cys_rich_CPXG: Cystei 43.3 8.9 0.00019 28.0 0.3 12 396-407 1-12 (52)
143 PF05531 NPV_P10: Nucleopolyhe 43.2 1.6E+02 0.0036 23.2 7.6 54 58-112 8-61 (75)
144 TIGR01562 FdhE formate dehydro 42.8 23 0.0005 35.4 3.2 39 327-367 182-222 (305)
145 PRK11788 tetratricopeptide rep 42.4 3.5E+02 0.0076 26.7 12.2 99 146-247 109-208 (389)
146 PF04423 Rad50_zn_hook: Rad50 42.2 12 0.00026 27.1 0.8 14 397-410 22-35 (54)
147 COG3937 Uncharacterized conser 41.9 2.1E+02 0.0046 24.1 8.1 41 72-112 25-65 (108)
148 TIGR02098 MJ0042_CXXC MJ0042 f 41.8 11 0.00023 25.1 0.5 15 395-409 2-16 (38)
149 TIGR02605 CxxC_CxxC_SSSS putat 41.8 5.2 0.00011 28.6 -1.1 26 374-403 9-34 (52)
150 KOG2069 Golgi transport comple 41.5 3.2E+02 0.0069 29.7 11.4 116 48-168 29-154 (581)
151 PF13934 ELYS: Nuclear pore co 41.3 2.5E+02 0.0054 26.6 9.9 91 144-248 78-169 (226)
152 PF05265 DUF723: Protein of un 41.2 21 0.00046 26.8 2.0 14 354-367 31-44 (60)
153 PHA02862 5L protein; Provision 41.2 25 0.00053 31.3 2.7 47 357-408 4-55 (156)
154 TIGR01206 lysW lysine biosynth 41.2 13 0.00028 27.4 0.8 15 395-409 2-16 (54)
155 cd00730 rubredoxin Rubredoxin; 41.0 9.4 0.0002 27.6 0.1 10 394-403 33-42 (50)
156 PRK10361 DNA recombination pro 41.0 1.7E+02 0.0036 31.2 9.3 83 88-170 135-235 (475)
157 PF13838 Clathrin_H_link: Clat 40.4 37 0.00081 26.1 3.3 41 220-261 7-47 (66)
158 PF05120 GvpG: Gas vesicle pro 40.3 1.8E+02 0.0039 23.1 7.3 58 50-107 7-70 (79)
159 PF00412 LIM: LIM domain; Int 40.2 16 0.00034 26.2 1.2 54 332-387 1-56 (58)
160 PF07035 Mic1: Colon cancer-as 39.7 2.3E+02 0.0049 25.8 8.9 83 144-245 29-115 (167)
161 PF12569 NARP1: NMDA receptor- 39.4 1.7E+02 0.0037 31.5 9.4 93 142-234 260-366 (517)
162 KOG1813 Predicted E3 ubiquitin 38.8 11 0.00025 37.1 0.3 45 356-406 242-286 (313)
163 PRK11827 hypothetical protein; 38.5 27 0.00058 26.3 2.2 22 354-375 25-47 (60)
164 COG1675 TFA1 Transcription ini 38.4 22 0.00047 32.7 2.1 37 371-412 113-149 (176)
165 PF13717 zinc_ribbon_4: zinc-r 38.4 16 0.00034 24.5 0.8 16 395-410 2-17 (36)
166 PRK10780 periplasmic chaperone 37.4 3E+02 0.0065 24.5 10.2 71 40-110 33-104 (165)
167 KOG1088 Uncharacterized conser 37.4 17 0.00036 31.1 1.0 18 393-410 96-113 (124)
168 TIGR02300 FYDLN_acid conserved 37.0 18 0.00039 31.4 1.2 14 395-408 26-39 (129)
169 cd05804 StaR_like StaR_like; a 36.4 3.4E+02 0.0073 26.5 10.5 97 146-246 116-213 (355)
170 PF00627 UBA: UBA/TS-N domain; 35.9 49 0.0011 21.8 3.0 18 186-203 18-37 (37)
171 PF14282 FlxA: FlxA-like prote 35.6 2.5E+02 0.0054 23.3 7.9 52 64-115 22-73 (106)
172 PF11793 FANCL_C: FANCL C-term 35.1 18 0.00039 27.8 0.9 34 375-408 27-68 (70)
173 KOG4057 Uncharacterized conser 35.0 3.4E+02 0.0073 24.4 9.5 29 51-80 3-31 (180)
174 smart00659 RPOLCX RNA polymera 34.6 21 0.00045 25.1 1.0 23 375-405 7-29 (44)
175 COG4530 Uncharacterized protei 34.2 16 0.00036 30.8 0.5 17 392-408 23-39 (129)
176 COG1655 Uncharacterized protei 33.8 22 0.00048 33.9 1.4 33 330-362 20-69 (267)
177 PF10122 Mu-like_Com: Mu-like 33.8 19 0.00042 26.2 0.7 15 394-408 23-37 (51)
178 COG5183 SSM4 Protein involved 33.7 31 0.00067 38.7 2.6 52 357-410 14-70 (1175)
179 PRK14714 DNA polymerase II lar 33.4 47 0.001 39.2 4.1 47 356-413 680-727 (1337)
180 PF04124 Dor1: Dor1-like famil 33.3 5.1E+02 0.011 26.0 12.4 30 49-82 6-35 (338)
181 PF13432 TPR_16: Tetratricopep 33.0 1.8E+02 0.004 20.7 6.7 55 150-206 3-57 (65)
182 PF06160 EzrA: Septation ring 32.5 6.8E+02 0.015 27.2 16.1 23 224-246 520-543 (560)
183 KOG4603 TBP-1 interacting prot 32.3 4E+02 0.0087 24.5 11.4 34 139-173 166-200 (201)
184 KOG3002 Zn finger protein [Gen 32.2 32 0.00069 34.3 2.3 48 350-406 43-91 (299)
185 KOG0297 TNF receptor-associate 32.2 20 0.00044 37.0 1.0 48 355-408 21-69 (391)
186 PF12906 RINGv: RING-variant d 32.1 29 0.00063 24.5 1.5 42 358-401 1-47 (47)
187 PF10046 BLOC1_2: Biogenesis o 32.0 2.8E+02 0.0062 22.6 9.0 27 56-82 2-28 (99)
188 COG4049 Uncharacterized protei 31.7 17 0.00037 26.9 0.2 16 393-408 15-30 (65)
189 PRK11088 rrmA 23S rRNA methylt 31.7 25 0.00055 34.0 1.5 7 331-337 4-10 (272)
190 KOG2169 Zn-finger transcriptio 31.7 34 0.00073 37.7 2.6 55 354-411 305-361 (636)
191 smart00806 AIP3 Actin interact 31.7 6.3E+02 0.014 26.5 12.9 102 49-150 161-292 (426)
192 KOG0804 Cytoplasmic Zn-finger 31.3 24 0.00052 36.8 1.3 45 357-406 177-222 (493)
193 KOG0263 Transcription initiati 31.2 1.2E+02 0.0025 33.7 6.5 33 141-173 19-51 (707)
194 PF05205 COMPASS-Shg1: COMPASS 30.6 3E+02 0.0065 22.9 7.6 65 102-167 13-80 (106)
195 smart00668 CTLH C-terminal to 30.2 60 0.0013 23.0 3.0 28 222-249 4-31 (58)
196 KOG3842 Adaptor protein Pellin 30.2 17 0.00037 36.2 0.0 45 362-406 308-352 (429)
197 TIGR03362 VI_chp_7 type VI sec 30.2 5.6E+02 0.012 25.5 10.7 26 145-170 134-159 (301)
198 PF01383 CpcD: CpcD/allophycoc 29.9 33 0.0007 25.4 1.5 23 41-64 23-45 (56)
199 cd00729 rubredoxin_SM Rubredox 29.9 32 0.0007 22.6 1.3 7 397-403 20-26 (34)
200 KOG3091 Nuclear pore complex, 29.9 3.6E+02 0.0077 28.8 9.4 11 50-60 334-344 (508)
201 PF08569 Mo25: Mo25-like; Int 29.8 4E+02 0.0087 27.0 9.7 113 85-210 9-126 (335)
202 TIGR03545 conserved hypothetic 29.5 7.7E+02 0.017 26.9 12.6 63 69-131 192-257 (555)
203 PF03833 PolC_DP2: DNA polymer 29.1 18 0.0004 40.7 0.0 18 234-251 470-487 (900)
204 PF05642 Sporozoite_P67: Sporo 29.1 1.4E+02 0.0031 32.4 6.4 42 160-201 451-492 (727)
205 cd00189 TPR Tetratricopeptide 29.0 2.1E+02 0.0045 20.2 8.9 88 150-245 6-94 (100)
206 KOG0259 Tyrosine aminotransfer 29.0 34 0.00074 35.3 1.9 16 375-390 211-226 (447)
207 KOG3842 Adaptor protein Pellin 28.9 32 0.00069 34.4 1.6 33 374-406 376-414 (429)
208 cd00194 UBA Ubiquitin Associat 28.8 73 0.0016 20.8 3.0 19 186-204 17-37 (38)
209 PRK00398 rpoP DNA-directed RNA 28.5 26 0.00057 24.4 0.7 14 395-408 21-34 (46)
210 PF10234 Cluap1: Clusterin-ass 28.3 5.8E+02 0.013 25.1 12.3 71 92-162 168-250 (267)
211 PRK11186 carboxy-terminal prot 28.0 8.8E+02 0.019 27.1 12.7 35 176-210 86-121 (667)
212 PF07282 OrfB_Zn_ribbon: Putat 27.4 29 0.00063 26.1 0.9 16 393-408 44-59 (69)
213 KOG1920 IkappaB kinase complex 27.2 8E+02 0.017 29.3 12.2 50 145-208 940-993 (1265)
214 cd00632 Prefoldin_beta Prefold 27.2 2.1E+02 0.0045 23.5 6.1 41 41-81 50-90 (105)
215 PRK14127 cell division protein 27.2 2.2E+02 0.0047 24.1 6.1 28 85-112 22-49 (109)
216 PF05508 Ran-binding: RanGTP-b 27.1 4.7E+02 0.01 26.2 9.3 67 49-116 38-107 (302)
217 PF07754 DUF1610: Domain of un 27.1 36 0.00078 20.8 1.0 11 393-403 14-24 (24)
218 PTZ00196 60S ribosomal protein 27.0 1.1E+02 0.0023 25.5 4.1 42 221-262 50-93 (98)
219 COG2888 Predicted Zn-ribbon RN 26.5 35 0.00076 25.6 1.1 11 370-380 9-19 (61)
220 PF09763 Sec3_C: Exocyst compl 26.2 9.3E+02 0.02 26.7 18.9 49 61-110 5-54 (701)
221 PF02609 Exonuc_VII_S: Exonucl 25.8 1.6E+02 0.0034 21.2 4.5 12 118-129 34-45 (53)
222 PF10158 LOH1CR12: Tumour supp 25.5 4.5E+02 0.0098 22.9 8.3 6 126-131 109-114 (131)
223 COG1777 Predicted transcriptio 25.5 4.8E+02 0.01 24.8 8.6 24 143-166 164-187 (217)
224 cd07651 F-BAR_PombeCdc15_like 25.4 5.7E+02 0.012 24.0 9.9 23 60-82 103-125 (236)
225 PHA03395 p10 fibrous body prot 25.3 3.7E+02 0.0081 21.8 7.3 53 58-111 8-60 (87)
226 KOG0933 Structural maintenance 25.3 6.4E+02 0.014 29.5 10.9 49 13-67 645-694 (1174)
227 KOG2758 Translation initiation 25.2 7.5E+02 0.016 25.3 14.5 121 88-213 68-200 (432)
228 PRK03564 formate dehydrogenase 25.1 91 0.002 31.3 4.1 36 328-366 186-223 (309)
229 PF14769 CLAMP: Flagellar C1a 25.1 1.9E+02 0.0042 23.6 5.5 25 276-300 61-85 (101)
230 PF07544 Med9: RNA polymerase 25.0 3.5E+02 0.0076 21.4 8.1 55 76-130 11-71 (83)
231 PF10058 DUF2296: Predicted in 24.8 44 0.00094 24.5 1.3 35 369-403 18-52 (54)
232 KOG4253 Tryptophan-rich basic 24.7 4.9E+02 0.011 23.5 8.1 51 58-109 35-86 (175)
233 PF10537 WAC_Acf1_DNA_bd: ATP- 24.4 67 0.0014 26.8 2.5 38 354-404 2-39 (102)
234 PF12760 Zn_Tnp_IS1595: Transp 24.2 58 0.0013 22.7 1.8 9 396-404 19-27 (46)
235 COG4416 Com Mu-like prophage p 24.2 32 0.0007 25.3 0.5 10 395-404 24-33 (60)
236 COG5627 MMS21 DNA repair prote 24.1 38 0.00081 32.5 1.1 49 357-408 191-241 (275)
237 PF03884 DUF329: Domain of unk 23.9 33 0.00072 25.5 0.6 14 395-408 2-15 (57)
238 KOG4594 Sequence-specific sing 23.7 82 0.0018 31.1 3.3 30 142-171 16-45 (354)
239 PLN03088 SGT1, suppressor of 23.6 5.4E+02 0.012 26.0 9.5 90 151-247 9-98 (356)
240 smart00150 SPEC Spectrin repea 23.5 3.4E+02 0.0073 20.7 8.6 50 54-103 35-87 (101)
241 PF12777 MT: Microtubule-bindi 23.5 3.2E+02 0.0069 27.6 7.8 68 91-158 240-319 (344)
242 PF01158 Ribosomal_L36e: Ribos 23.4 1.4E+02 0.0031 24.8 4.2 44 219-262 48-93 (98)
243 KOG4367 Predicted Zn-finger pr 23.4 39 0.00085 35.2 1.1 26 356-384 5-30 (699)
244 smart00165 UBA Ubiquitin assoc 23.3 1E+02 0.0023 19.9 2.9 18 186-203 17-36 (37)
245 smart00734 ZnF_Rad18 Rad18-lik 23.2 29 0.00062 21.5 0.1 13 396-408 2-14 (26)
246 PLN02372 violaxanthin de-epoxi 23.2 7E+02 0.015 26.2 9.9 75 52-129 363-443 (455)
247 PF04799 Fzo_mitofusin: fzo-li 23.2 5.9E+02 0.013 23.3 8.6 15 95-109 139-153 (171)
248 PF05290 Baculo_IE-1: Baculovi 23.2 75 0.0016 27.9 2.6 55 354-410 79-136 (140)
249 PF14691 Fer4_20: Dihydroprymi 23.1 97 0.0021 26.1 3.3 27 220-246 39-65 (111)
250 PF04475 DUF555: Protein of un 22.8 42 0.00091 27.8 1.0 14 394-407 46-59 (102)
251 smart00834 CxxC_CXXC_SSSS Puta 22.6 52 0.0011 21.8 1.3 26 374-403 9-34 (41)
252 COG3357 Predicted transcriptio 22.6 16 0.00035 29.7 -1.4 30 369-405 57-86 (97)
253 PF00804 Syntaxin: Syntaxin; 22.6 2.7E+02 0.0059 21.8 5.9 28 105-132 43-70 (103)
254 PLN03086 PRLI-interacting fact 22.5 62 0.0013 35.2 2.5 36 371-406 478-515 (567)
255 PF07304 SRA1: Steroid recepto 22.3 1.7E+02 0.0036 26.3 4.9 27 180-206 105-131 (157)
256 KOG3850 Predicted membrane pro 22.3 5.9E+02 0.013 26.4 9.1 76 22-103 14-93 (455)
257 KOG1854 Mitochondrial inner me 22.3 1.1E+03 0.024 26.2 17.5 59 64-122 289-347 (657)
258 TIGR00373 conserved hypothetic 22.0 80 0.0017 28.3 2.8 38 366-409 104-142 (158)
259 PLN02915 cellulose synthase A 21.9 78 0.0017 36.8 3.2 59 347-407 7-69 (1044)
260 KOG2148 Exocyst protein Sec3 [ 21.9 1.2E+03 0.025 26.3 18.7 31 178-208 308-338 (867)
261 PF01399 PCI: PCI domain; Int 21.9 3.6E+02 0.0077 21.1 6.5 27 184-210 3-29 (105)
262 PF10154 DUF2362: Uncharacteri 21.8 3.4E+02 0.0073 29.2 7.7 76 36-113 105-180 (510)
263 PF06309 Torsin: Torsin; Inte 21.7 2.4E+02 0.0052 24.5 5.5 17 143-159 66-82 (127)
264 PF13934 ELYS: Nuclear pore co 21.7 5.3E+02 0.011 24.4 8.5 58 150-211 114-171 (226)
265 PF07926 TPR_MLP1_2: TPR/MLP1/ 21.7 5.2E+02 0.011 22.2 10.8 80 52-131 33-118 (132)
266 PF14823 Sirohm_synth_C: Siroh 21.6 1.4E+02 0.0029 23.2 3.6 36 94-133 3-38 (70)
267 PLN02195 cellulose synthase A 21.5 79 0.0017 36.5 3.1 50 356-407 7-60 (977)
268 PF09943 DUF2175: Uncharacteri 21.4 1.4E+02 0.003 24.9 3.8 32 49-80 69-101 (101)
269 PF07729 FCD: FCD domain; Int 21.4 1.4E+02 0.0031 23.7 4.1 29 179-207 95-123 (125)
270 PF06794 UPF0270: Uncharacteri 21.3 2.6E+02 0.0057 21.7 5.1 44 141-196 8-51 (70)
271 PF06156 DUF972: Protein of un 21.2 3.6E+02 0.0078 22.6 6.4 41 92-132 14-57 (107)
272 KOG0801 Predicted E3 ubiquitin 20.9 46 0.001 30.1 1.0 23 394-416 137-159 (205)
273 KOG1001 Helicase-like transcri 20.9 49 0.0011 36.8 1.4 49 356-409 455-503 (674)
274 PF06676 DUF1178: Protein of u 20.8 3.7E+02 0.0081 24.0 6.7 47 50-96 74-132 (148)
275 PF13371 TPR_9: Tetratricopept 20.8 2.7E+02 0.0059 20.2 5.2 52 191-247 6-57 (73)
276 PF12126 DUF3583: Protein of u 20.8 3.4E+02 0.0074 27.0 6.9 80 53-132 38-122 (324)
277 PF02813 Retro_M: Retroviral M 20.8 1.3E+02 0.0029 23.8 3.4 39 255-295 23-61 (86)
278 PF06588 Muskelin_N: Muskelin 20.6 1.4E+02 0.003 28.0 4.0 34 140-173 162-195 (199)
279 smart00030 CLb CLUSTERIN Beta 20.5 7.2E+02 0.016 23.4 12.4 60 50-113 4-63 (206)
280 KOG1039 Predicted E3 ubiquitin 20.4 76 0.0016 32.3 2.5 59 348-406 154-221 (344)
281 PF10552 ORF6C: ORF6C domain; 20.4 5.2E+02 0.011 21.6 8.1 21 189-209 88-108 (116)
282 PF14787 zf-CCHC_5: GAG-polypr 20.3 58 0.0013 22.0 1.1 12 397-408 4-15 (36)
283 KOG1488 Translational represso 20.3 1.1E+03 0.024 25.4 12.4 28 222-249 455-482 (503)
284 PF12805 FUSC-like: FUSC-like 20.3 7.6E+02 0.016 23.9 9.5 82 49-130 192-280 (284)
285 PF14276 DUF4363: Domain of un 20.2 1.6E+02 0.0035 24.7 4.2 47 181-227 29-75 (121)
286 PLN02189 cellulose synthase 20.1 75 0.0016 36.9 2.6 53 352-406 31-87 (1040)
287 PF14569 zf-UDP: Zinc-binding 20.1 1.2E+02 0.0026 24.1 2.9 53 354-408 8-64 (80)
288 PRK11788 tetratricopeptide rep 20.0 8.4E+02 0.018 24.0 16.1 90 150-246 186-276 (389)
No 1
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.6e-91 Score=675.56 Aligned_cols=377 Identities=41% Similarity=0.728 Sum_probs=360.2
Q ss_pred hhhhhcccccccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhh---c-CCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014891 38 TEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD---S-ENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (416)
Q Consensus 38 ~~~~~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~---~-~~~~~~~~~~~l~~li~kl~~lkrkl~~~~ 113 (416)
+|++.|||++||||||.++|+||++||.|+||++.|...++++.+ + .....+.+++.+|.||.+++.+||++++.+
T Consensus 2 ~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~e~~i 81 (389)
T KOG0396|consen 2 TFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKLEEYI 81 (389)
T ss_pred cchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999987 2 235578999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh-hcC---chhhhhccHHHHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 014891 114 RTEHLQAQKCRARLNHLE-SAD---AENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVID 189 (416)
Q Consensus 114 ~~e~~~~~~~~~Rl~~L~-~~~---~~~~~~w~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~ 189 (416)
+.|.+.+++|++||+|+. ++. +.....|.+.++||+|+|||+|+||+++|..|.++++|++++|+|+|.+++.|.+
T Consensus 82 q~e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~ 161 (389)
T KOG0396|consen 82 QSEEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRD 161 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHH
Confidence 999999999999999999 443 3668899999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHHHhcccCC
Q 014891 190 ALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269 (416)
Q Consensus 190 ~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~lLaf~~~ 269 (416)
+|+.|++.|||.||++|+..|+|.+|.|||+||+|+|||||+.+++.+||+|||+||.||+.+++++++.+||+|||++.
T Consensus 162 sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 162 SLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhcCcccHHHHHHHHHHHHHHHhCCCCCchHHHHHHhhhhcccCcccccCCC---CCCCCCCchhhhcccCCC
Q 014891 270 TECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDC---TKEDPLSQESFRKLASPL 346 (416)
Q Consensus 270 ~~~spY~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aG~salkt~~c~~~~~---~~~~P~c~~~~~~l~~~L 346 (416)
+..++|..++++.||+.|+++|.++++++||+|.+|+|.+.+++|+|++|||.|+.+.+ .+.||+|++.++|++.+|
T Consensus 242 t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp~c~~~~~~~~~~~CpvC~~~f~~ia~~L 321 (389)
T KOG0396|consen 242 TSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTPRCLNDESDNNPNNCPVCCEAFKPIAQAL 321 (389)
T ss_pred cCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccccccccccCCCCCCCCCcccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999998753 356999999999999999
Q ss_pred CCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecccC
Q 014891 347 PYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYIS 416 (416)
Q Consensus 347 P~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi~ 416 (416)
||+||.||+++|.|||+.||++|||+++|||+|||.++|.+|...++ +.||+++++|..+++.|||++
T Consensus 322 Pfah~~~S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~--i~dP~~~k~f~~~~l~kvy~~ 389 (389)
T KOG0396|consen 322 PFAHHAQSRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDG--IGDPRTKKVFRYSELCKVYLS 389 (389)
T ss_pred CchhhhhhHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCC--CcCCCCCccccHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999964332 999999999999999999985
No 2
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-64 Score=493.57 Aligned_cols=271 Identities=28% Similarity=0.503 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHhCCCCc-c-cHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHh
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDL-V-DIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~-~-d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~L 221 (416)
..||.+|+.||+|+|..|+|+.|.+|+|+... . ....|.++++|.++|+.||+++||+|+..|+..|...+|.|||.|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~L 196 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKL 196 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHH
Confidence 44799999999999999999999999999854 3 357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChH--HHHHHHHHhccccccccHHHHHHHHHHhcccCC-CCcchhhhhcCcccHHHHHHHHHHHHHHH
Q 014891 222 RLQEFIELVRGENNL--RAITYARKYLAPWGATHMKELQRVMATLAFKSN-TECTTYKALFEPKQWDFLVDQFKQEFCKL 298 (416)
Q Consensus 222 r~q~fIELir~~~~~--eAi~yar~~l~~~~~~~~~ei~~lm~lLaf~~~-~~~spY~~L~~~~rw~~L~~~F~~~~~~l 298 (416)
|.++|+++++.|+.. |||.|||+||+||...+..|||.+|++|.|-.. ...+||.+++++..|.++.+.|.++||.+
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycal 276 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCAL 276 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999998665 999999999999999999999999999999876 46799999999999999999999999999
Q ss_pred hCCCCCchHHHHHHhhhhcccCcccccCCCCC--CCCCCchhhhcccCCCCCCCCCCCeeeecccccccCCCCCceeccC
Q 014891 299 YGMTLEPLLNIYLQAGLSALNTPYCYEDDCTK--EDPLSQESFRKLASPLPYSKQHHSKLVCYITKELMDTENPPQVLPN 376 (416)
Q Consensus 299 ~gl~~~s~L~~~l~aG~salkt~~c~~~~~~~--~~P~c~~~~~~l~~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~ 376 (416)
+|+|.+|||.+.+.||+.|||++..+..+... ..| -+.+.+|++++||..+||||+|+|||++|+++++||||+|+|
T Consensus 277 lg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W-~~~deLPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~C 355 (394)
T KOG2817|consen 277 LGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEW-NTKDELPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLIC 355 (394)
T ss_pred cCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCc-cccccCccceeccccccccceeecccchhhccCCCCCeeeec
Confidence 99999999999999999999999988775432 123 255778999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 377 GYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 377 G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
|||||++||.+|++++.-+|||||||.+...+++++|||
T Consensus 356 GHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 356 GHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred cceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 999999999999875545699999999999999999998
No 3
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=100.00 E-value=1.1e-40 Score=316.23 Aligned_cols=268 Identities=19% Similarity=0.262 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHH
Q 014891 145 RVKRILVDYMLRMSYYETAEKLAESSNIQDLVD-IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 223 (416)
Q Consensus 145 ~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d-~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~ 223 (416)
.++.+.-.++.+.|...-+-.+..+.|++++.. .+.|..++.|.+.|.+.++..-++|. +....|.+.++.+|++|..
T Consensus 102 ~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtesel~l~~ 180 (396)
T COG5109 102 TYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTESELELYL 180 (396)
T ss_pred eehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchhhhHHHH
Confidence 456677777778888888888999999998875 58999999999999999999999999 7888899988777766654
Q ss_pred --HHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHHHhcccCCCC--------cchhhhhc------------C-
Q 014891 224 --QEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTE--------CTTYKALF------------E- 280 (416)
Q Consensus 224 --q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~lLaf~~~~~--------~spY~~L~------------~- 280 (416)
.++.-++.. ++++|+.|.++.++.|..+|..+|+.+|-.|.+.+... .....+++ |
T Consensus 181 ~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdIDk 259 (396)
T COG5109 181 VSHESLLLIHK-RYDEALRLCFTKLASFVPKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDIDK 259 (396)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHHH
Confidence 455555544 89999999999999999999999999999999865410 00001111 1
Q ss_pred -cccHHHHHHHHHHHHHHHhCCCCCchHHHHHHhhhhcccCcccccCCCC--CCCCCCchhhhcccCCCCCCCCCCCeee
Q 014891 281 -PKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCT--KEDPLSQESFRKLASPLPYSKQHHSKLV 357 (416)
Q Consensus 281 -~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aG~salkt~~c~~~~~~--~~~P~c~~~~~~l~~~LP~~~~~hS~~~ 357 (416)
..-|.+|...|.++||+..|+|.+|||...+.+|.+|++.+.++..+.. +++|+ +.+..|+++.||...||||+|+
T Consensus 260 vnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~~l~k~~si~~~kHvdWT-~~~eLP~eIklp~~~hfHs~Fi 338 (396)
T COG5109 260 VNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFLQLSKSGSILFDKHVDWT-DDSELPMEIKLPKGRHFHSLFI 338 (396)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHHHHHHhhhHHHhhccCcc-CCCCCceEEecCCcccccceee
Confidence 3679999999999999999999999999999999999999999988653 45666 6778899999999999999999
Q ss_pred ecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 358 CYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
|||++|+++++||||||.|||||+++||.+|++++.-.|||||||..-..+++.||||
T Consensus 339 CPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvrf 396 (396)
T COG5109 339 CPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILRVRF 396 (396)
T ss_pred ccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhcccC
Confidence 9999999999999999999999999999999988878999999999999999999997
No 4
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=99.97 E-value=8.9e-32 Score=237.93 Aligned_cols=142 Identities=39% Similarity=0.677 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHH
Q 014891 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRV 260 (416)
Q Consensus 181 f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~l 260 (416)
|.++++|+++|++||+++|++||++|++.|.+.++.|+|.|++|+|||||+.|+..+||+|||++|.++...+.++|+++
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~ 81 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL 81 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999988877789999999
Q ss_pred HHHhcccCCCC--cchhhhhcCcccHHHHHHHHHHHHHHHhCCCCCchHHHHHHhhhhcccCcc
Q 014891 261 MATLAFKSNTE--CTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPY 322 (416)
Q Consensus 261 m~lLaf~~~~~--~spY~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aG~salkt~~ 322 (416)
|++|+|.++.. .+||++++++++|+.+++.|++++|..+|+|.+|||++++++|++++||+.
T Consensus 82 ~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l~ 145 (145)
T PF10607_consen 82 MSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTLM 145 (145)
T ss_pred HHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhcC
Confidence 99999999876 689999999999999999999999999999999999999999999999973
No 5
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.93 E-value=2.6e-25 Score=206.85 Aligned_cols=176 Identities=22% Similarity=0.353 Sum_probs=165.3
Q ss_pred cHHHHHHHHHHHHHHcChHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHH
Q 014891 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQ 220 (416)
Q Consensus 142 ~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~-~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~ 220 (416)
.+..+|+||++||+++||.++|+.|++++|+.. ..|.+.+.++.+|+.+|+.|++..|++.+++..|.+.+.+..|.|.
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~ 104 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFH 104 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHH
Confidence 457899999999999999999999999999997 7899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhccccccc---cHHHHHHHHHHhcccCCCCcchhhhhcCcccHHHHHHHHHHHHHH
Q 014891 221 LRLQEFIELVRGENNLRAITYARKYLAPWGAT---HMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCK 297 (416)
Q Consensus 221 Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~---~~~ei~~lm~lLaf~~~~~~spY~~L~~~~rw~~L~~~F~~~~~~ 297 (416)
|++|+||||||+|+..+||+|||.+++|++.. .+.+++++|++|+|.++. .+|+.+|++.++|.++|+..++..++
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~-~sp~~~l~~~s~R~kvA~~vN~aiL~ 183 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQ-ESPSAELLSQSLRQKVASEVNSAILA 183 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcc-cCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975 578999999999998654 58999999999999999999999999
Q ss_pred HhCCCCCchHHHHHHhhhhcc
Q 014891 298 LYGMTLEPLLNIYLQAGLSAL 318 (416)
Q Consensus 298 l~gl~~~s~L~~~l~aG~sal 318 (416)
.++....+.|.-.+..+..+-
T Consensus 184 ~~~~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 184 SQEHESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HhcccccchHHHHHHHHHHHH
Confidence 999999999998886665554
No 6
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.70 E-value=2.1e-17 Score=136.46 Aligned_cols=94 Identities=37% Similarity=0.552 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHhcccccccc---HHHHHHHHHHhcccCCCCcchhhhhcCcccHHHHHHHHHHHHHHHh-CCCCCchHH
Q 014891 233 ENNLRAITYARKYLAPWGATH---MKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLY-GMTLEPLLN 308 (416)
Q Consensus 233 ~~~~eAi~yar~~l~~~~~~~---~~ei~~lm~lLaf~~~~~~spY~~L~~~~rw~~L~~~F~~~~~~l~-gl~~~s~L~ 308 (416)
+++.+||+|||++|++|..++ +++|+++||+|+|.++.+.+||++++++++|+.+++.|++++|.++ |++.+|+|.
T Consensus 1 ~~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~ 80 (99)
T smart00757 1 GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLE 80 (99)
T ss_pred CcHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHH
Confidence 357899999999999999887 8899999999999987567999999999999999999999999999 999999999
Q ss_pred HHHHhhhhcccCcccccC
Q 014891 309 IYLQAGLSALNTPYCYED 326 (416)
Q Consensus 309 ~~l~aG~salkt~~c~~~ 326 (416)
+++++|+.+++++.|+..
T Consensus 81 ~~~~~~~~~~~~l~~~~~ 98 (99)
T smart00757 81 ILLSAGLAALKTLLEKGG 98 (99)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999753
No 7
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.40 E-value=1.4e-13 Score=96.46 Aligned_cols=42 Identities=43% Similarity=0.886 Sum_probs=28.3
Q ss_pred ecccccccCCCCCceeccCCccccHHHHHHHHHhCC-CceecC
Q 014891 358 CYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNN-GKITCP 399 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~-~~~~CP 399 (416)
|||++|..+++||||+|||||||++++|++|+++++ ++|+||
T Consensus 1 CpIc~e~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999668999999999999999999999998763 899998
No 8
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.28 E-value=5.9e-12 Score=93.68 Aligned_cols=56 Identities=38% Similarity=0.556 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChH
Q 014891 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNL 236 (416)
Q Consensus 181 f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~ 236 (416)
|.++.+|+++|..|||++|++||+++++.+.+.+|.++|.|++|+||||++.++..
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~~ 57 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLE 57 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCcC
Confidence 67899999999999999999999999999999999999999999999999988653
No 9
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.95 E-value=6.5e-10 Score=84.07 Aligned_cols=53 Identities=32% Similarity=0.525 Sum_probs=47.7
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
|+|||+++.|++ ||++||||||++++|.++.++ ..+||.|++.++.+++++.+
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSGQTYERRAIEKWLLS---HGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHH---CCCCCCCcCCCChhhceeCH
Confidence 789999999987 899999999999999999865 35899999999999888764
No 10
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.67 E-value=1.5e-08 Score=79.51 Aligned_cols=55 Identities=35% Similarity=0.492 Sum_probs=43.4
Q ss_pred CeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 354 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 354 S~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
..|.||||+++|.+ ||++|+||+|.+.+|+++.+. +...||.|++....+++...
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQ--NGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCT--TSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHc--CCCCCCCCCCcCCcccceEC
Confidence 35899999999999 999999999999999999754 45799999999998887653
No 11
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.50 E-value=8.5e-08 Score=93.19 Aligned_cols=60 Identities=23% Similarity=0.426 Sum_probs=51.1
Q ss_pred CCCCeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 351 QHHSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 351 ~~hS~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
..++.|+||||+.+|++..+-|. .|||||||++||+++. ..-.||.|++.|...|+..|.
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k----~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK----KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc----ccccccccCCccccCCEEEec
Confidence 35889999999999988777666 5999999999999994 124699999999999988763
No 12
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.24 E-value=7.9e-07 Score=66.30 Aligned_cols=44 Identities=27% Similarity=0.510 Sum_probs=32.2
Q ss_pred eeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCC
Q 014891 355 KLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTG 402 (416)
Q Consensus 355 ~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~ 402 (416)
-+.||||+..+.+ ||. ..|||||++++|.++. ++++.++||..|
T Consensus 11 ~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i-~~~~~~~CPv~G 55 (57)
T PF11789_consen 11 SLKCPITLQPFED---PVKSKKCGHTFEKEAILQYI-QRNGSKRCPVAG 55 (57)
T ss_dssp -SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHC-TTTS-EE-SCCC
T ss_pred ccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHH-HhcCCCCCCCCC
Confidence 4789999999986 887 6999999999999998 456789999954
No 13
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=7.5e-07 Score=83.90 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=50.1
Q ss_pred CCCCeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 351 QHHSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 351 ~~hS~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
..|+.|+|||+|-+|++--..+. ++||||||.+||+++- .-.|+.|+..|..+|+.-+
T Consensus 107 ~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----as~C~~C~a~y~~~dvIvl 165 (293)
T KOG3113|consen 107 TQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----ASVCHVCGAAYQEDDVIVL 165 (293)
T ss_pred cccceeecccccceecceEEEEEEeccceeccHHHHHHhh-----hccccccCCcccccCeEee
Confidence 35899999999999998776655 7999999999999994 3589999999999998654
No 14
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.95 E-value=8.5e-06 Score=74.97 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=49.1
Q ss_pred CeeeecccccccCCCCCceeccCCccccHHHHHHHHHhC-------------CCceecCCCCcccCcCCceecc
Q 014891 354 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKN-------------NGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 354 S~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~-------------~~~~~CP~~~~~~~~~~~~kvy 414 (416)
..|.|||..+...+ |++++|||+|+..+|.+|.... .+..+||.|...++..++..+|
T Consensus 17 ~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45889999987754 8999999999999999986421 2457999999999999999988
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=97.94 E-value=7.2e-06 Score=57.28 Aligned_cols=41 Identities=32% Similarity=0.669 Sum_probs=30.8
Q ss_pred ecccccccCCCCCceeccCCccccHHHHHHHHHhCCCc-eecCCC
Q 014891 358 CYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGK-ITCPRT 401 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~-~~CP~~ 401 (416)
|||-.+.+.+ ||.|+|||+|.+..|.++.+..++. +.||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 7888888877 9999999999999999998765554 899987
No 16
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.93 E-value=8.5e-05 Score=74.79 Aligned_cols=175 Identities=12% Similarity=0.135 Sum_probs=126.8
Q ss_pred cHHHHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHh
Q 014891 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (416)
Q Consensus 142 ~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~L 221 (416)
...++-|++.+.|+..||-+++..+..|+||--.. .......++++.|+++.++.-...-.-...+......|.|
T Consensus 16 kk~efi~il~q~l~slgy~~S~~~lE~es~ll~~t-----at~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv 90 (519)
T KOG0293|consen 16 KKGEFIRILWQILYSLGYDHSSPLLEWESGLLIPT-----ATTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLV 90 (519)
T ss_pred ccchhhHhHHHHHHhcCccccchhhHHhhCccccc-----chHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHH
Confidence 34578899999999999999999999999986433 2233467889999999999887766444455567899999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHHHhcccCCCC--------------------cchh---hhh
Q 014891 222 RLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTE--------------------CTTY---KAL 278 (416)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~lLaf~~~~~--------------------~spY---~~L 278 (416)
.+|.|+|+++.|++.+|+...|..+.+... +.+.+.++...|+++++.. .+.| ..+
T Consensus 91 ~kQ~fLEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il 169 (519)
T KOG0293|consen 91 NKQIFLEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL 169 (519)
T ss_pred HHHHHHHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc
Confidence 999999999999999999999976766543 6788889999998875410 1111 122
Q ss_pred cCcccHHHHHH---HHHHHHHHHhCCCCCchHHHHHHhhhhcccCcc
Q 014891 279 FEPKQWDFLVD---QFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPY 322 (416)
Q Consensus 279 ~~~~rw~~L~~---~F~~~~~~l~gl~~~s~L~~~l~aG~salkt~~ 322 (416)
+.+.|.+.|.+ ...++-|-.++--..-.|.....+|-..+|+..
T Consensus 170 lP~rRLehLl~qAv~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt 216 (519)
T KOG0293|consen 170 LPKRRLEHLLEQAVKYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQT 216 (519)
T ss_pred CChHHHHHHHHHHHHHHHhHhHHhcccchhhhhhhcccCcccCCchh
Confidence 33456677765 456666766663333355556667766666543
No 17
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.79 E-value=4.4e-05 Score=49.86 Aligned_cols=32 Identities=34% Similarity=0.689 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHcChHHHHHHHHHHhCCC
Q 014891 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (416)
Q Consensus 142 ~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~ 173 (416)
.+..++++|++||.++||.++|.+|.+|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999875
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.75 E-value=2.3e-05 Score=55.21 Aligned_cols=43 Identities=23% Similarity=0.497 Sum_probs=36.5
Q ss_pred ecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 358 CYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
|+|-.+..+++.+|++++|||+|..+.+.++. +..++||.|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~---~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK---GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc---CCCCCCcCCCC
Confidence 56666666778889999999999999999996 56789999975
No 19
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.74 E-value=5.2e-05 Score=47.82 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHh
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESS 170 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~es 170 (416)
+.||++|.+||.++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 20
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.72 E-value=2.9e-05 Score=54.53 Aligned_cols=42 Identities=29% Similarity=0.483 Sum_probs=36.8
Q ss_pred eecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCC
Q 014891 357 VCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRT 401 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~ 401 (416)
.|||-.+.+.+.+.++.++|||+|..+.|.+|.+++ .+||.|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~---~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN---NSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS---SB-TTT
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC---CcCCcc
Confidence 489999999888889999999999999999999764 399998
No 21
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.5e-05 Score=70.34 Aligned_cols=60 Identities=15% Similarity=0.332 Sum_probs=50.8
Q ss_pred CCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 352 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 352 ~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
--+.+-|||..+-..+.- |+...|||||++++|+...++ ..+||.|++.....++.+||+
T Consensus 128 ~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~---~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKN---TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHh---CCCCCCcccccchhhheeccC
Confidence 345688999888877655 588999999999999998764 479999999999999999995
No 22
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=6.2e-05 Score=81.15 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 350 KQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 350 ~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
..|.-++.||+..+-.-+ -++..||||||..|++..-. ...-+||.|+..|..+|+++||+
T Consensus 638 k~yK~~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~e--tRqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYE--TRQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred HHHHhceeCCCccCchhh---HHHHhcchHHHHHHHHHHHH--HhcCCCCCCCCCCCcccccccCC
Confidence 357778899988855444 56788999999999998754 34679999999999999999996
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.25 E-value=0.00039 Score=47.75 Aligned_cols=40 Identities=28% Similarity=0.626 Sum_probs=32.6
Q ss_pred ecccccccCCCCCce-eccCCccccHHHHHHHHHhCCCceecCCC
Q 014891 358 CYITKELMDTENPPQ-VLPNGYVYSTKALEEMAKKNNGKITCPRT 401 (416)
Q Consensus 358 Cpis~~~~~~~NpP~-~lp~G~V~s~~al~~l~~~~~~~~~CP~~ 401 (416)
|||-.+.+.+ |+ +++|||.|....|.++.++ .+.++||.|
T Consensus 1 C~iC~~~~~~---~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED---PVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS---EEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred CCcCCccccC---CCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence 5666666655 44 8999999999999999875 678899987
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.25 E-value=0.0002 Score=73.19 Aligned_cols=66 Identities=18% Similarity=0.347 Sum_probs=53.7
Q ss_pred cCCCCCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 343 ASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 343 ~~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
.-.+|.--.+..-|.|+|..+.+.. |+++||||+|+..+|..+... ...||.|+..+..+.+++-+
T Consensus 14 ~t~~~~l~~Le~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~---~~~CP~Cr~~~~~~~Lr~N~ 79 (397)
T TIGR00599 14 TTPIPSLYPLDTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSN---QPKCPLCRAEDQESKLRSNW 79 (397)
T ss_pred cCCcccccccccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhC---CCCCCCCCCccccccCccch
Confidence 3466666778889999999999865 789999999999999998753 34899999999877665443
No 25
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.08 E-value=0.00063 Score=46.46 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=29.3
Q ss_pred ecccccccCCCCCc-eeccCCccccHHHHHHHHHhCCCceecCCC
Q 014891 358 CYITKELMDTENPP-QVLPNGYVYSTKALEEMAKKNNGKITCPRT 401 (416)
Q Consensus 358 Cpis~~~~~~~NpP-~~lp~G~V~s~~al~~l~~~~~~~~~CP~~ 401 (416)
|||-.+.+.+ | ++++|||+|.++.+.++.++ ..+||.|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEK---NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence 6677776655 6 68999999999999999764 3699987
No 26
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.01 E-value=0.00069 Score=44.71 Aligned_cols=39 Identities=33% Similarity=0.571 Sum_probs=30.6
Q ss_pred ecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCC
Q 014891 358 CYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRT 401 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~ 401 (416)
|+|-.+. ..+++.+||||+|....+..+.+ .+..+||.|
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~--~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLK--SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHHHHHH--hCcCCCCCC
Confidence 4555555 45689999999999999999976 456789986
No 27
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.92 E-value=0.00099 Score=45.59 Aligned_cols=43 Identities=33% Similarity=0.562 Sum_probs=32.4
Q ss_pred ecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcc
Q 014891 358 CYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLV 404 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~ 404 (416)
|+|-.+.+ .++.++.+|||+|....+.++.+. +..+||.|+..
T Consensus 2 C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEF--REPVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhh--hCceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCc
Confidence 56666665 344445669999999999999764 56789999875
No 28
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0014 Score=61.71 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=56.3
Q ss_pred CCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 351 QHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 351 ~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
.--+.|-|-|.-+..-+ ||+..|||.|+=-+|-+|..-..++..||+|+-+.+.+.+..||
T Consensus 43 ~~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45688999999998887 99999999999999999998888888999999999999999988
No 29
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.79 E-value=0.0011 Score=65.46 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=33.7
Q ss_pred eeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 372 QVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 372 ~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
|+-+|||.||+.+|..+.. .+...||.|+..+...+++...|
T Consensus 22 ~i~~CGH~~C~sCv~~l~~--~~~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 22 MVNVCGHTLCESCVDLLFV--RGSGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred ccCCCCCcccHHHHHHHhc--CCCCCCCCCCCccchhhcccccc
Confidence 4458999999999999863 35569999999999888765543
No 30
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.0015 Score=61.90 Aligned_cols=59 Identities=20% Similarity=0.421 Sum_probs=48.6
Q ss_pred CCC-CeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCcee
Q 014891 351 QHH-SKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 412 (416)
Q Consensus 351 ~~h-S~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~k 412 (416)
..| -.++|||++..++-.-|-.+ -|||||+..+++++|.++. .+||.|++..+..|+.-
T Consensus 216 ~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 216 IAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD---MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred hhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc---ccccCCCCcCcccceEe
Confidence 345 45999999999987766555 5899999999999998643 68999999998888764
No 31
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.44 E-value=0.0042 Score=44.72 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=33.8
Q ss_pred eecccccccCCCCCceeccCCcc-ccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 357 VCYITKELMDTENPPQVLPNGYV-YSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~V-~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
.|+|-.+...+ ++.+||||+ +....+.++.+ ...+||.|.+.+.
T Consensus 4 ~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 4 ECPICFENPRD---VVLLPCGHLCFCEECAERLLK---RKKKCPICRQPIE 48 (50)
T ss_dssp B-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHH---TTSBBTTTTBB-S
T ss_pred CCccCCccCCc---eEEeCCCChHHHHHHhHHhcc---cCCCCCcCChhhc
Confidence 46666665433 888999999 99999999976 4679999998764
No 32
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.25 E-value=0.0038 Score=59.78 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=28.1
Q ss_pred ceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 371 PQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 371 P~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
+++.+|||+|+..+|.+|.+. ...||.|...+.
T Consensus 195 ~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~ 227 (238)
T PHA02929 195 GILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFI 227 (238)
T ss_pred eecCCCCCcccHHHHHHHHhc---CCCCCCCCCEee
Confidence 567799999999999999753 458999998876
No 33
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0023 Score=61.38 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=42.1
Q ss_pred CCCCCCCCCCeeeecccccccCCCC-------CceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcC
Q 014891 345 PLPYSKQHHSKLVCYITKELMDTEN-------PPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 345 ~LP~~~~~hS~~~Cpis~~~~~~~N-------pP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~ 408 (416)
.||..|-..| +|.|.|++.+.+- .-+.|.|+||+-+.+|+-|.- -+.+-+||||++....+
T Consensus 216 glPtkhl~d~--vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci-vGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 216 GLPTKHLSDS--VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI-VGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCCCCCcc--hhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee-ecCCCCCchHHHHhhHh
Confidence 3444444333 4666666664332 478999999999999988763 34567999999986543
No 34
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.015 Score=56.58 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=52.4
Q ss_pred ccCCCCCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 342 LASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 342 l~~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
++..+-.....+-..-|.+..+.+.. |-..||||+|+=.+|..|... +--||.|.+.|..+++.=+
T Consensus 226 ~~~s~~~~~i~~a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~e---k~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 226 LEDSNSLSSIPEATRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSE---KAECPLCREKFQPSKVICL 291 (293)
T ss_pred hhhccCCccCCCCCCceEEEecCCCC---CCcCcCcchHHHHHHHHHHcc---ccCCCcccccCCCcceeee
Confidence 34555555667777889888887765 889999999999999999854 3459999999999987644
No 35
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0078 Score=62.59 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=43.2
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhC--CCceecCCCCcccCcCCceeccc
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKN--NGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~--~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
..|||.-+.-.- |++..||||||-.+|.++-..+ .+..+||.|...+.+.|++.|++
T Consensus 187 ~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 187 MQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 355555544333 5556699999999999876433 35679999999999999999885
No 36
>PHA02926 zinc finger-like protein; Provisional
Probab=95.48 E-value=0.013 Score=55.04 Aligned_cols=44 Identities=9% Similarity=0.141 Sum_probs=34.4
Q ss_pred ceeccCCccccHHHHHHHHHhC---CCceecCCCCcccCcCCceecc
Q 014891 371 PQVLPNGYVYSTKALEEMAKKN---NGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 371 P~~lp~G~V~s~~al~~l~~~~---~~~~~CP~~~~~~~~~~~~kvy 414 (416)
+++.+|||+|+..++.+|.+.. +....||.|...|..=.-.++|
T Consensus 192 GIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~ 238 (242)
T PHA02926 192 GLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFY 238 (242)
T ss_pred cccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccce
Confidence 6778999999999999998642 3456799999998765544444
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.019 Score=55.35 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=41.1
Q ss_pred CCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 353 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 353 hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
.|-..||+.|+.- .+|-++.||||+|+--++..-. .-+-.+.||.||+....=+...|+
T Consensus 237 t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~-~~~asf~Cp~Cg~~~~~lq~sgv~ 295 (298)
T KOG2879|consen 237 TSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSR-LWDASFTCPLCGENVEPLQASGVK 295 (298)
T ss_pred cCCceeeccCCCC--CCCeeeccccceeehhhhhhhh-cchhhcccCccCCCCcchhhccCC
Confidence 4556666666643 4566668899999999997532 234579999999998854454443
No 38
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.011 Score=56.70 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=39.7
Q ss_pred CCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 352 HHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 352 ~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
....+.|||..+.+.+ |+++||||.+++.++..+.. +.+.||.|..
T Consensus 10 ~~~~~~C~iC~~~~~~---p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFRE---PVLLPCGHNFCRACLTRSWE---GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhc---CccccccchHhHHHHHHhcC---CCcCCcccCC
Confidence 4567899999999887 59999999999999999875 6699999983
No 39
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=94.84 E-value=0.011 Score=62.25 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=136.0
Q ss_pred HHHHHHHHHcChHHHHHHHHHHhCCC-Cccc---HHHHH--------HHHHHHHHHhcCChHHHHHHHHhhhhhhhh---
Q 014891 148 RILVDYMLRMSYYETAEKLAESSNIQ-DLVD---IEVFQ--------EAKKVIDALQNKEVAPALAWCSDNKSRLKK--- 212 (416)
Q Consensus 148 rlI~dyLlR~Gy~etA~~l~~esgi~-~~~d---~~~f~--------~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k--- 212 (416)
..+..|++..|+.+++..+.....-. +.+. ...+. .+.......-.+-+..+.+.+.+.....++
T Consensus 254 ~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 333 (469)
T KOG1477|consen 254 VPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVGQ 333 (469)
T ss_pred CCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccce
Confidence 47889999999999998886544211 1110 11111 122222223356677778888777776666
Q ss_pred ----ccchHHHHhHHHHHHHHHhcCChHHHHHHHHHhcccccc-----ccHHHHHHHHHHhcccCCCCcchhhhhcCccc
Q 014891 213 ----SKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGA-----THMKELQRVMATLAFKSNTECTTYKALFEPKQ 283 (416)
Q Consensus 213 ----~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~-----~~~~ei~~lm~lLaf~~~~~~spY~~L~~~~r 283 (416)
..+..-+.+.++.+|.+.+.+.+...++|-+..|++... ...++++..+++|+|.++.. ++-..+.++..
T Consensus 334 ~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~-s~~g~~~~~~~ 412 (469)
T KOG1477|consen 334 VFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEE-SPVGYLLDPIQ 412 (469)
T ss_pred eecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCccc-CccccccCccc
Confidence 347889999999999999999999999999999988765 35688999999999998875 66778889999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHhhhhcccCcccccCCCCCCCCCC
Q 014891 284 WDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTPYCYEDDCTKEDPLS 335 (416)
Q Consensus 284 w~~L~~~F~~~~~~l~gl~~~s~L~~~l~aG~salkt~~c~~~~~~~~~P~c 335 (416)
.+-+++..+.+.+...+.+.+++|..++. +++.|........+|-|
T Consensus 413 ~e~v~~~~n~~il~t~~~~~~~~l~~~l~------~~~~~~~~~~~~~~~~~ 458 (469)
T KOG1477|consen 413 REPVAEALNSAILETDNNSKDPDLERVLS------QTPAELSLYARDNPPRN 458 (469)
T ss_pred chhHHhhhcccccccCCCCccchhhhhhc------cchhhHhhhhhcCCCcc
Confidence 99999999999999999999999887776 67777666544555554
No 40
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.026 Score=56.57 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=40.2
Q ss_pred CCCeeeeccccccc--CCC--------CCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 352 HHSKLVCYITKELM--DTE--------NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 352 ~hS~~~Cpis~~~~--~~~--------NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
.+|-=+|-|.+++| +++ --|=.|||||++--.+|+.|.++ +-+||+|....-.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER---qQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER---QQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh---ccCCCcccCcccccc
Confidence 44555677777775 222 23678999999999999999875 469999987644433
No 41
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.64 E-value=0.039 Score=43.13 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=24.4
Q ss_pred CCCceeccCCccccHHHHHHHHHhCCCceecCCCC
Q 014891 368 ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTG 402 (416)
Q Consensus 368 ~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~ 402 (416)
+-+++..+|||+|-...|.+|.+.+. +||.|.
T Consensus 42 ~~~i~~~~C~H~FH~~Ci~~Wl~~~~---~CP~CR 73 (73)
T PF12678_consen 42 ECPIVWGPCGHIFHFHCISQWLKQNN---TCPLCR 73 (73)
T ss_dssp TS-EEEETTSEEEEHHHHHHHHTTSS---B-TTSS
T ss_pred ccceEecccCCCEEHHHHHHHHhcCC---cCCCCC
Confidence 45556679999999999999986543 999984
No 42
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=93.66 E-value=0.019 Score=56.88 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 344 SPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 344 ~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
-.+|.-...-+.+-|-|..+-++- ||..||||.|+.-+|++... .+..||.|-.+|..++++.=+|
T Consensus 12 tsipslk~lD~lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~---~~p~CP~C~~~~~Es~Lr~n~i 77 (442)
T KOG0287|consen 12 TSIPSLKTLDDLLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLS---YKPQCPTCCVTVTESDLRNNRI 77 (442)
T ss_pred ccCchhhhhHHHHHHhHHHHHhcC---ceeccccchHHHHHHHHHhc---cCCCCCceecccchhhhhhhhH
Confidence 356777778888999998887655 99999999999999998863 4689999999999999887554
No 43
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.90 E-value=0.068 Score=39.32 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=27.8
Q ss_pred ceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCc
Q 014891 371 PQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 410 (416)
Q Consensus 371 P~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~ 410 (416)
.+++||||++.+....- .+---||.|+..|..++.
T Consensus 20 ~~~~pCgH~I~~~~f~~-----~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 20 GTVLPCGHLICDNCFPG-----ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred cccccccceeeccccCh-----hhccCCCCCCCcccCCCC
Confidence 78899999999998742 223479999999987763
No 44
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=92.62 E-value=0.067 Score=51.32 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=31.7
Q ss_pred eecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcc
Q 014891 357 VCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLV 404 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~ 404 (416)
.||+|.... .||-+.-.|||||.++++..+.. ....++||.-|-+
T Consensus 178 rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~-~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 178 RDPISKKPI--VNPVISKKCGHVYDRDSIMQILC-DEITIRCPVLGCE 222 (262)
T ss_pred cCchhhhhh--hchhhhcCcCcchhhhhHHHHhc-cCceeecccccCC
Confidence 344443333 57666688999999999999973 3457899994444
No 45
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=92.38 E-value=0.14 Score=41.16 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=34.2
Q ss_pred CCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 368 ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 368 ~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
+-|++.-.|||.|-..+|.++.....++-.||.|.+++.+.+
T Consensus 44 ~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 44 DCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 345555679999999999999876666789999999987654
No 46
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.096 Score=51.31 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=40.0
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
.-|.|.++-+.-...-|+|||.|++-.-++.+|. .+-+-+||.|....+
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~--~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWL--LGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHH--hhhcccCCccCCCCC
Confidence 5677777777666667889999999999999997 345789999988754
No 47
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=92.09 E-value=0.068 Score=51.97 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 344 SPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 344 ~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
-.+|..+..-|.+.|.|..+-+.- |+..||||.|+.-+|+... +.+.-||.|-..+..+-.+.=
T Consensus 14 T~IPSL~~LDs~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL---~~qp~CP~Cr~~~~esrlr~~ 77 (391)
T COG5432 14 TKIPSLKGLDSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHL---GTQPFCPVCREDPCESRLRGS 77 (391)
T ss_pred ccCcchhcchhHHHhhhhhheeec---ceecccccchhHHHHHHHh---cCCCCCccccccHHhhhcccc
Confidence 467888899999999999999887 9999999999999999875 457899999999887766543
No 48
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=91.12 E-value=0.27 Score=35.52 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=26.6
Q ss_pred eeecccccccCCCCCcee-ccCCcc--ccHHHHHHHHHhCCCceecCCCCc
Q 014891 356 LVCYITKELMDTENPPQV-LPNGYV--YSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~-lp~G~V--~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
+.||+|+..|.- |+. -.|-|+ |..++..++..+. +..+||.|++
T Consensus 3 L~CPls~~~i~~---P~Rg~~C~H~~CFDl~~fl~~~~~~-~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRI---PVRGKNCKHLQCFDLESFLESNQRT-PKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SS---EEEETT--SS--EEHHHHHHHHHHS----B-TTT--
T ss_pred eeCCCCCCEEEe---CccCCcCcccceECHHHHHHHhhcc-CCeECcCCcC
Confidence 689999999965 777 779998 7777777776543 4589999986
No 49
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=0.16 Score=51.27 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=42.5
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
+.|-|..|...+..--..|||+|.|-.++++.|.... +-.||.|+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--CccCCCCCCcCC
Confidence 8999999999888888889999999999999998643 567999998543
No 50
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.12 E-value=0.19 Score=48.39 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=38.6
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHH-HHHhCCCceecCCCCcccCcCCc
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEE-MAKKNNGKITCPRTGLVCNYSDL 410 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~-l~~~~~~~~~CP~~~~~~~~~~~ 410 (416)
+-|+|..+.+.. |.+.||||||+--+|.. |.++. .-.||.|......+++
T Consensus 216 ~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k--~~~CplCRak~~pk~v 266 (271)
T COG5574 216 YKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKK--YEFCPLCRAKVYPKKV 266 (271)
T ss_pred cceeeeecccCC---cccccccchhhHHHHHHHHHhhc--cccCchhhhhccchhh
Confidence 457777776655 99999999999999998 66542 3469999887766655
No 51
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.32 E-value=0.2 Score=52.05 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=40.2
Q ss_pred CCCCCCCCCCeee-------------ecccccccC---CCC---C--------ceeccCCccccHHHHHHHHHhCCCcee
Q 014891 345 PLPYSKQHHSKLV-------------CYITKELMD---TEN---P--------PQVLPNGYVYSTKALEEMAKKNNGKIT 397 (416)
Q Consensus 345 ~LP~~~~~hS~~~-------------Cpis~~~~~---~~N---p--------P~~lp~G~V~s~~al~~l~~~~~~~~~ 397 (416)
-+|..+.||-+|- |+|.+...+ +.+ + =|+.||.|||.+.+|++|.. +-+..
T Consensus 548 ~lpe~YsY~r~l~~dh~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd--~ykl~ 625 (636)
T KOG0828|consen 548 FLPEKYSYHRRLQQDHLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMD--TYKLI 625 (636)
T ss_pred hCccccccccccccccccchhhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHh--hhccc
Confidence 4555555555554 777777663 222 2 23459999999999999973 34678
Q ss_pred cCCCCccc
Q 014891 398 CPRTGLVC 405 (416)
Q Consensus 398 CP~~~~~~ 405 (416)
||.|....
T Consensus 626 CPvCR~pL 633 (636)
T KOG0828|consen 626 CPVCRCPL 633 (636)
T ss_pred CCccCCCC
Confidence 99997654
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.04 E-value=0.61 Score=33.53 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=32.4
Q ss_pred eecccccccCCCCCceeccCC-----ccccHHHHHHHHHhCCCceecCCCC
Q 014891 357 VCYITKELMDTENPPQVLPNG-----YVYSTKALEEMAKKNNGKITCPRTG 402 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G-----~V~s~~al~~l~~~~~~~~~CP~~~ 402 (416)
+|+|-.+ ..+++.|+..||. +.+-+..|.+|.... +..+||.|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~-~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINES-GNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHc-CCCcCCCCC
Confidence 4667766 3334457889986 789999999998644 456999985
No 53
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=0.21 Score=49.44 Aligned_cols=54 Identities=22% Similarity=0.447 Sum_probs=44.3
Q ss_pred eecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 357 VCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
+|||..+ +--||-++.-.|+|+|-.++-+...+ .-+||+|+..-..++++|+|-
T Consensus 302 ~CpvClk--~r~Nptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 302 VCPVCLK--KRQNPTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred cChhHHh--ccCCCceEEecceEEeHHHHHHHHHh---cCCCCccCCcchHHHHHHHhc
Confidence 5666544 34688899999999999999998753 458999999999999998873
No 54
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.94 E-value=0.49 Score=50.94 Aligned_cols=50 Identities=28% Similarity=0.517 Sum_probs=38.5
Q ss_pred CeeeecccccccCC-CC-CceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 354 SKLVCYITKELMDT-EN-PPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 354 S~~~Cpis~~~~~~-~N-pP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
+.-.|+|..|.|.. +| -|-.|||||++...+|++|.+. +-.||.|...+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er---~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER---QQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH---hCcCCcchhhhh
Confidence 45677777777743 22 2667999999999999999986 469999998443
No 55
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=84.80 E-value=3.3 Score=36.44 Aligned_cols=48 Identities=13% Similarity=0.405 Sum_probs=42.9
Q ss_pred chHHHHhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHH
Q 014891 215 SKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 262 (416)
Q Consensus 215 S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~ 262 (416)
+.|-|=+.+.-|++||..|...+|..|..++-.-+...+.++|+++.+
T Consensus 38 ~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~ 85 (142)
T PF04494_consen 38 SRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSS 85 (142)
T ss_dssp GGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 568999999999999999999999999999988888888899988864
No 56
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=84.16 E-value=0.82 Score=40.56 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=23.2
Q ss_pred cCCccccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 375 PNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 375 p~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
.||..|+..-...+. ...+.|.||.||.+....|
T Consensus 104 ~C~~~y~~~ea~~~~-d~~~~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 104 NCQSKYTFLEANQLL-DMDGTFTCPRCGEELEEDD 137 (147)
T ss_pred CCCCEeeHHHHHHhc-CCCCcEECCCCCCEEEEcC
Confidence 488888854443332 2357799999999886544
No 57
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=83.90 E-value=9.4 Score=37.41 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=44.5
Q ss_pred CCCCCCCCCCCCCCCCCC---CCCCCCchhh---hhcccccccccHHHHHHHHHhhhHHHH---HhHHHHHHHHHHhhhc
Q 014891 13 AASPPQNPTPAAAGGMTP---FPKLTQLTEA---LKLEHQFLRVPFEHYKKTIRTNHRAVE---KEITSVISNVADVSDS 83 (416)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~le~~~~~vP~E~l~k~fr~~qk~ie---ke~~~v~~~~~~l~~~ 83 (416)
++|...+|+|+..+|..+ |..++.+.+. ...-+|.+--|.-.|-|.-|..-..+| +|...+.+.+.+....
T Consensus 14 ~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~r~~~~~~~~pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~ 93 (271)
T PF13805_consen 14 TASQIANPPPPPSSTKSGRFFGKGSLSHSFRKSTAGSQQPELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQ 93 (271)
T ss_dssp ----------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccCCCCCCCCCCCCcccCCCCcchhhhcccccccChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555554444432 1123333443 122335555555555555555444444 4666666667776654
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 014891 84 ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRA 125 (416)
Q Consensus 84 ~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~ 125 (416)
++.+-.++..+|..|+..+..+.....+..+.-...++.++.
T Consensus 94 edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~ 135 (271)
T PF13805_consen 94 EDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRN 135 (271)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445666777777777776666665555443334444433
No 58
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=83.82 E-value=33 Score=33.92 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=66.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhhhhcCchhhhhccHHHHHHHHHHHHHHcChHHHHHH
Q 014891 87 SKDDAVNHLTSLVSRLQGLKRKLEEGSRTE-HLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEK 165 (416)
Q Consensus 87 ~~~~~~~~l~~li~kl~~lkrkl~~~~~~e-~~~~~~~~~Rl~~L~~~~~~~~~~w~~~~lnrlI~dyLlR~Gy~etA~~ 165 (416)
..+.+...+..+|+.++.-+|+|-+..+.. ..-++.+..++.||. ....|-+.--.+++-|.+++-
T Consensus 36 teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~Le-------avLqRir~G~~LVekM~~YAS------ 102 (324)
T PF12126_consen 36 TEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLE-------AVLQRIRTGGALVEKMKLYAS------ 102 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHhHHHHHHHHHHhcc------
Confidence 345677888889999998888887655432 234555666777775 223344444555555555441
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhh----hhhccchHHHHhHHHHHHHHHhcCC
Q 014891 166 LAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR----LKKSKSKFEFQLRLQEFIELVRGEN 234 (416)
Q Consensus 166 l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~----L~k~~S~LeF~Lr~q~fIELir~~~ 234 (416)
|-+++.--.-|+++| .-+..-.|. .-+..+--||++++|.++.-|.+|.
T Consensus 103 -----------DQEVLdMh~FlreAL---------~rLrqeePq~lqa~V~td~F~E~k~rLQ~L~scItq~t 155 (324)
T PF12126_consen 103 -----------DQEVLDMHGFLREAL---------ERLRQEEPQNLQAAVRTDGFDEFKARLQDLVSCITQGT 155 (324)
T ss_pred -----------hHHHHHHHHHHHHHH---------HHhhhhcCcccccceecccHHHHHHHHHHHHHHHhcCc
Confidence 222222222233333 223332222 2223456799999999999999874
No 59
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.89 E-value=20 Score=33.61 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHH-HH---Hhhhhhhhhcc----c
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALA-WC---SDNKSRLKKSK----S 215 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~-W~---~~n~~~L~k~~----S 215 (416)
.+++.++-+||+-.|+..|-++|-.|...+.......=.-..+..+++..+|++..-+ |- +...++|.... .
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~ 85 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH 85 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5789999999999999999999877665543322211122334556777788876443 22 22334444432 3
Q ss_pred hHHHHhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHHHhcccCCCCcchhhhhcCcccHHHHHH----HH
Q 014891 216 KFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVD----QF 291 (416)
Q Consensus 216 ~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~lLaf~~~~~~spY~~L~~~~rw~~L~~----~F 291 (416)
.||-.|.+.-.+.-+..++...|=+|.+|.-+-.. +..|=+.-+.+=-.+...+..|++.+|+ +.|.++.= .|
T Consensus 86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq--nq~eWkDWF~fPf~~~a~~tppf~~~F~-ktw~e~~~~sl~Nf 162 (241)
T KOG1333|consen 86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ--NQAEWKDWFVLPFLPSAKDTPPFRKYFD-KTWIEIYYVSLHNF 162 (241)
T ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh--cchhhhhheecccCCCCCCCccHHHHHH-hhhhHhhhhhHHhH
Confidence 56666777777777778888888777775432221 1222222222111122234577777775 46765421 23
Q ss_pred HHHHHHHhCCCCCchHHHHHHhhhhcccCcc
Q 014891 292 KQEFCKLYGMTLEPLLNIYLQAGLSALNTPY 322 (416)
Q Consensus 292 ~~~~~~l~gl~~~s~L~~~l~aG~salkt~~ 322 (416)
.+..++ .+| +|......+|+.-.++..
T Consensus 163 lst~~q--c~p--~pvi~~~~~e~ar~~~~~ 189 (241)
T KOG1333|consen 163 LSTLFQ--CMP--VPVILNFDAECQRTNQVQ 189 (241)
T ss_pred HHHHHH--cCC--cceeehHHHHHhcccccc
Confidence 333321 122 344444555665555543
No 60
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.62 E-value=0.61 Score=35.03 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=14.8
Q ss_pred hCCCceecCCCCcccCcC
Q 014891 391 KNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 391 ~~~~~~~CP~~~~~~~~~ 408 (416)
...|.++||||+..|...
T Consensus 44 g~~gev~CPYC~t~y~l~ 61 (62)
T COG4391 44 GDEGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCCCcEecCccccEEEec
Confidence 356899999999998764
No 61
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=81.82 E-value=3 Score=36.30 Aligned_cols=65 Identities=11% Similarity=0.311 Sum_probs=49.4
Q ss_pred HHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHHHh
Q 014891 200 LAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL 264 (416)
Q Consensus 200 L~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~lL 264 (416)
-.|+.+.-+..+.-=+.+-|=+...-|++||.+|...+|..|..++-.-+...|.++|+++.+..
T Consensus 12 ~~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~ 76 (133)
T cd08044 12 RKWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSIT 76 (133)
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccC
Confidence 35665552222222256899999999999999999999999999988888777888999885543
No 62
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=81.46 E-value=13 Score=37.36 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHhCCCC-ccc-HHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHh
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVD-IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~-~~d-~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~L 221 (416)
..+-|+|.+||-.+....|-..|.+|.++.- -+| +| ...++|.+|+|+..|.-.+..+--- .-...|
T Consensus 8 sdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd------~Fv~dI~sG~WD~VL~~vqsLKLP~-----kkL~dL 76 (508)
T KOG0275|consen 8 SDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVD------GFVNDINSGHWDTVLKTVQSLKLPD-----KKLIDL 76 (508)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHH------HHHHhcccCchHHHHHHHHhccCch-----hHHHHH
Confidence 4677999999999999999999999998862 233 33 5678999999999998887664322 224578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhccccc--cccHHHHHHHHHHhc--ccCCCCcchhhhhcCcccHHHHHHHHHHH
Q 014891 222 RLQEFIELVRGENNLRAITYARKYLAPWG--ATHMKELQRVMATLA--FKSNTECTTYKALFEPKQWDFLVDQFKQE 294 (416)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~~--~~~~~ei~~lm~lLa--f~~~~~~spY~~L~~~~rw~~L~~~F~~~ 294 (416)
+.|-.+|||+-.....|-..+|+--+-.. ....+..-++=.+|. |-++ .+.|.+--.+.|+..+++.+..+
T Consensus 77 YEqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp--~EaY~dssKEkrRa~IAQ~ls~E 151 (508)
T KOG0275|consen 77 YEQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDP--REAYGDSSKEKRRAVIAQALSGE 151 (508)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccCh--hhhcCcchHHHHHHHHHHHhcCc
Confidence 88888899887777777777774322111 112233333333443 2222 24566544456777777766443
No 63
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=80.90 E-value=42 Score=30.13 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=21.0
Q ss_pred ChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHh
Q 014891 195 EVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVR 231 (416)
Q Consensus 195 dl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir 231 (416)
.++.||+|+.+|...-....-.+-|+--+.+.+.|||
T Consensus 103 ~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl~lIk 139 (157)
T PF04136_consen 103 RLDECLEFLEEHPNFKEAEVYLIRFRQCLTRALTLIK 139 (157)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4788999999997654332223344444444444444
No 64
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=79.66 E-value=1.7 Score=33.32 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.1
Q ss_pred CCCceecCCCCcccCcCC
Q 014891 392 NNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 392 ~~~~~~CP~~~~~~~~~~ 409 (416)
-+|..+||.|+..|...+
T Consensus 50 ~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 50 VEGELICPECGREYPIRD 67 (68)
T ss_dssp TTTEEEETTTTEEEEEET
T ss_pred cCCEEEcCCCCCEEeCCC
Confidence 368999999999998654
No 65
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=1.5 Score=45.01 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=43.4
Q ss_pred CCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHh--CCC---ceecCC--CCcccCcCCc
Q 014891 350 KQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKK--NNG---KITCPR--TGLVCNYSDL 410 (416)
Q Consensus 350 ~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~--~~~---~~~CP~--~~~~~~~~~~ 410 (416)
+-..|-|-|-|.-+.-.+..--+-+||+|||++.+++....- .+| .++||- ||++-....+
T Consensus 179 ~F~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~v 246 (445)
T KOG1814|consen 179 KFVNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQV 246 (445)
T ss_pred HHHhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHH
Confidence 445788999999888888777888999999999999876532 234 455654 4554444433
No 66
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=77.33 E-value=1.5 Score=43.01 Aligned_cols=43 Identities=19% Similarity=0.447 Sum_probs=34.3
Q ss_pred eeecccccccCCCCCceecc-CCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 356 LVCYITKELMDTENPPQVLP-NGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp-~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
+-||.++...-- ||..| |||.+|+++|..-.- +.-++||.|..
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~--dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALL--DSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhh--hccccCCCccc
Confidence 889999888754 78875 999999999985432 34589999976
No 67
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.19 E-value=0.91 Score=46.37 Aligned_cols=48 Identities=15% Similarity=0.284 Sum_probs=37.2
Q ss_pred CCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 366 DTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 366 ~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
..+.--+.+-|||.||.+++++|.- ......||-|..+-...++++.|
T Consensus 17 ~g~hr~vsl~cghlFgs~cie~wl~-k~~~~~cp~c~~katkr~i~~e~ 64 (463)
T KOG1645|consen 17 AGNHRIVSLQCGHLFGSQCIEKWLG-KKTKMQCPLCSGKATKRQIRPEY 64 (463)
T ss_pred cCceEEeeecccccccHHHHHHHHh-hhhhhhCcccCChhHHHHHHHHH
Confidence 3444455688999999999999984 33467899999988887777665
No 68
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=76.81 E-value=0.79 Score=46.74 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCCcee-ccCCccccHHHHHHHHHhC--CC----ceecCCCCcccCc-CCceeccc
Q 014891 368 ENPPQV-LPNGYVYSTKALEEMAKKN--NG----KITCPRTGLVCNY-SDLVKAYI 415 (416)
Q Consensus 368 ~NpP~~-lp~G~V~s~~al~~l~~~~--~~----~~~CP~~~~~~~~-~~~~kvyi 415 (416)
.-|-.+ -|||||.|++..+-|++-. +| .-.||.|...... .-..|++|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 445555 5999999999999887631 22 3699999987763 33455544
No 69
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.30 E-value=3.1 Score=40.96 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=39.2
Q ss_pred CeeeecccccccC---CCCCceeccCCccccHHHHHHHHHhCCCceecCCCCccc
Q 014891 354 SKLVCYITKELMD---TENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 405 (416)
Q Consensus 354 S~~~Cpis~~~~~---~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~ 405 (416)
|.+.|-|.++..+ ++.-|-.|.|||.+...++.++.. .+.+.||-|-+..
T Consensus 2 ~~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~--~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 2 SFPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLG--NSRILCPFCRETT 54 (296)
T ss_pred CCCceeecCccccccCcccCCcccccCceehHhHHHHHhc--CceeeccCCCCcc
Confidence 3456667766663 466799999999999999999974 5678999998873
No 70
>PHA01750 hypothetical protein
Probab=72.57 E-value=22 Score=27.20 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhHH-HHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 014891 52 FEHYKKTIRTNHRA-VEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (416)
Q Consensus 52 ~E~l~k~fr~~qk~-ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~ 111 (416)
|=-++..||.+-+. +.+|++++...+.+++. +.|.+-+++..+|||++.
T Consensus 25 YlKIKq~lkdAvkeIV~~ELdNL~~ei~~~ki-----------kqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 25 YLKIKQALKDAVKEIVNSELDNLKTEIEELKI-----------KQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHhhcc
Confidence 33456677776654 46688888887777764 566777888888888753
No 71
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=70.77 E-value=1.1 Score=32.73 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.0
Q ss_pred ceecCCCCcccCcCCc
Q 014891 395 KITCPRTGLVCNYSDL 410 (416)
Q Consensus 395 ~~~CP~~~~~~~~~~~ 410 (416)
.+.||||++.|+...+
T Consensus 2 ~f~CP~C~~~~~~~~L 17 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSL 17 (54)
T ss_pred CcCCCCCCCccCHHHH
Confidence 5889999997765543
No 72
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.74 E-value=67 Score=29.71 Aligned_cols=121 Identities=17% Similarity=0.307 Sum_probs=61.4
Q ss_pred cccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhh-------cCCC--ChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 014891 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD-------SENF--SKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQ 119 (416)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~-------~~~~--~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~ 119 (416)
.-|.+..++..+.. ..+.+++..+...+.++.. .... .....++.+..+-+.+..|+.++.......-+.
T Consensus 58 sFps~~~~~~~~~~-~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 58 SFPSQAKQKRQNKL-EKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred ecChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 35777777665554 3444555555554444433 1111 223445555556666666666665433333334
Q ss_pred HHHHHHHHHhhhhcCchhhhhccHHHHHHHHHHHHHHcChHHHHHHHHHHhCCCCccc
Q 014891 120 AQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVD 177 (416)
Q Consensus 120 ~~~~~~Rl~~L~~~~~~~~~~w~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d 177 (416)
+...+..+..+. .....|.... -+|..|+.+. +.-....|.++.||++..|
T Consensus 137 i~~~~~~~~~~~----~~anrwTDNI--~~l~~~~~~k-~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 137 IEKLKEEIKIAK----EAANRWTDNI--FSLKSYLKKK-FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHH----HHHHHHHhhH--HHHHHHHHHh-cCCCHHHHHHHcCCccccC
Confidence 444444444432 2334564322 3566777763 2234566778999986443
No 73
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=69.51 E-value=34 Score=29.72 Aligned_cols=28 Identities=11% Similarity=0.303 Sum_probs=25.1
Q ss_pred HHHHHhhhHHHHHhHHHHHHHHHHhhhc
Q 014891 56 KKTIRTNHRAVEKEITSVISNVADVSDS 83 (416)
Q Consensus 56 ~k~fr~~qk~ieke~~~v~~~~~~l~~~ 83 (416)
||++..+-..|-+.+++|...++..+++
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988773
No 74
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=69.26 E-value=32 Score=29.70 Aligned_cols=58 Identities=9% Similarity=0.105 Sum_probs=45.0
Q ss_pred HHHHHHHHcChHHHHHHHHHHhCC---CCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhh
Q 014891 149 ILVDYMLRMSYYETAEKLAESSNI---QDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (416)
Q Consensus 149 lI~dyLlR~Gy~etA~~l~~esgi---~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~ 207 (416)
-|.+.+ +.|..+.|-..+++..- +...++.......+..+-|+.|++.+|++|++.+-
T Consensus 7 ~I~~~I-~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 7 KIRQAI-LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 455666 88999998888776531 22345677778888999999999999999999864
No 75
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=68.73 E-value=2.5 Score=39.28 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=33.8
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCccc
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 405 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~ 405 (416)
|+|-|.++-..+ ||+..|||-|+..+.-+-.+++ .+|-.|++..
T Consensus 197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg---~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKG---DECGVCGKAT 240 (259)
T ss_pred eeehhchhhccc---hhhhhcchhHHHHHHHHHhccC---Ccceecchhh
Confidence 699999998777 9999999999988754433333 4788888754
No 76
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=68.49 E-value=3.2 Score=43.87 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=41.7
Q ss_pred CCeeeecccccccCCCCCceeccCCccccHHHHHHHHHh--CCCceecCCCCcccCcCC
Q 014891 353 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKK--NNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 353 hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~--~~~~~~CP~~~~~~~~~~ 409 (416)
.+..+|-+..++..+ ++.-.|.|+|++-++.+.... .+..+.||.|..-.+.+.
T Consensus 534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 467788888877766 899999999999999876542 123399999988776653
No 77
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=68.39 E-value=1.1 Score=34.10 Aligned_cols=48 Identities=17% Similarity=0.358 Sum_probs=22.2
Q ss_pred eeecccccccCCCCCce-eccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCce
Q 014891 356 LVCYITKELMDTENPPQ-VLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 411 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~-~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~ 411 (416)
+-|++....|.+ || +..|.|+|+..++..-. | -.||.|...--..|++
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~----~-~~CPvC~~Paw~qD~~ 56 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCI----G-SECPVCHTPAWIQDIQ 56 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGT----T-TB-SSS--B-S-SS--
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhc----C-CCCCCcCChHHHHHHH
Confidence 457777777766 65 57899999999996532 1 2499999887777765
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=67.95 E-value=4.5 Score=40.50 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=42.1
Q ss_pred eecccccccCC-CCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 357 VCYITKELMDT-ENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 357 ~Cpis~~~~~~-~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
.||+..|+||- +-...--|||+-+++-+...+.++- .-.||-|...|..+.++-|-
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l--ngrcpacrr~y~denv~~~~ 72 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL--NGRCPACRRKYDDENVRYVT 72 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhc--cCCChHhhhhccccceeEEe
Confidence 38888888852 2224557999999999999886543 34799999999988887554
No 79
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=67.39 E-value=51 Score=26.33 Aligned_cols=76 Identities=14% Similarity=0.357 Sum_probs=45.4
Q ss_pred cccHHHHHHHH---HhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 014891 49 RVPFEHYKKTI---RTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRA 125 (416)
Q Consensus 49 ~vP~E~l~k~f---r~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~ 125 (416)
..+.+.+..++ +..|..+--.++.....+.++...... .+.. .++.-+.||..+|+++.... +.++.++.
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~--~~~~-~~~~y~~KL~~ikkrm~~l~----~~l~~lk~ 85 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQI--NEPF-DLDPYVKKLVNIKKRMSNLH----ERLQKLKK 85 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHH-HhhHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34455555443 456777777777777777777651111 1111 23347788888888886655 35566677
Q ss_pred HHHhhh
Q 014891 126 RLNHLE 131 (416)
Q Consensus 126 Rl~~L~ 131 (416)
|+.+|+
T Consensus 86 R~~~L~ 91 (92)
T PF14712_consen 86 RADKLQ 91 (92)
T ss_pred HHHhhc
Confidence 877764
No 80
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.11 E-value=1.9e+02 Score=31.34 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHH
Q 014891 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (416)
Q Consensus 182 ~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIE 228 (416)
..+......|.+++++.|-++..+....+...-..|+=++.-.++++
T Consensus 259 ~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~ 305 (560)
T PF06160_consen 259 EQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE 305 (560)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778999999999999999999888888888887777765
No 81
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=66.53 E-value=2 Score=35.14 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=12.7
Q ss_pred CceeccCCccccHHHHH
Q 014891 370 PPQVLPNGYVYSTKALE 386 (416)
Q Consensus 370 pP~~lp~G~V~s~~al~ 386 (416)
+-+++|||||+-..+++
T Consensus 92 ~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 92 VFVVFPCGHVVHYSCIK 108 (109)
T ss_pred eEEEeCCCeEEeccccc
Confidence 34779999999776653
No 82
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=3.9 Score=41.73 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 344 SPLPYSKQHHSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 344 ~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
++|-|.....--+-|||+..+++.+---|. -..|+|||-+|+++|.-+ ....++-.+.+.|...|+..+
T Consensus 90 IkL~F~Kns~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK-~knwkdLltdepFtR~DiIti 159 (518)
T KOG0883|consen 90 IKLKFHKNSEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIK-TKNWKDLLTDEPFTRADIITI 159 (518)
T ss_pred eeeeeccCCCCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcc-hhhHHHhhccCCcchhceeee
Confidence 445555555667889999999998776666 469999999999999533 234678888888888877654
No 83
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=64.17 E-value=11 Score=27.18 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=22.5
Q ss_pred ecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 358 CYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
||+.-+.+++..--+. =+||+-|.+....++.+ ++.-+||-|.+.|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~--~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE--NEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT--SS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh--ccCCCCCCCCCCCC
Confidence 6777777754432222 58999999999999854 34568999998874
No 84
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=63.97 E-value=1.8e+02 Score=29.95 Aligned_cols=60 Identities=17% Similarity=0.328 Sum_probs=39.4
Q ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014891 54 HYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (416)
Q Consensus 54 ~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~ 113 (416)
.+....+.-.+.++.|+......-......+...-+++...+..|++++..+|.+.+++-
T Consensus 25 ~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 25 ELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666665554433332334446778899999999999999986654
No 85
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=63.97 E-value=1.3e+02 Score=28.11 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHH
Q 014891 145 RVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (416)
Q Consensus 145 ~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q 224 (416)
...+.++--|+|.|..+-|..+.+..... +. =++-+..|+. .|..+-+++||..-..
T Consensus 40 e~Er~~Ar~lird~rKdrAlllLKkKryQ---------------E~----Ll~qt~~qL~----nlEqmvsdiEft~vqk 96 (209)
T KOG2910|consen 40 EAERQLARDLIRDGRKDRALLLLKKKRYQ---------------EE----LLTQTDNQLI----NLEQMVSDIEFTQVQK 96 (209)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHH---------------HH----HHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 56788888999999888777765543322 11 1334455554 3445568999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhcc
Q 014891 225 EFIELVRGENNLRAITYARKYLA 247 (416)
Q Consensus 225 ~fIELir~~~~~eAi~yar~~l~ 247 (416)
+|++=++.| .+||+-.++.|.
T Consensus 97 ~V~~gLk~G--N~~lkkl~~~~~ 117 (209)
T KOG2910|consen 97 KVMEGLKQG--NEALKKLQQEFD 117 (209)
T ss_pred HHHHHHHHH--HHHHHHHHHhcC
Confidence 999999998 577777776653
No 86
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.90 E-value=6.7 Score=37.76 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=23.9
Q ss_pred CCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 376 NGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 376 ~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
|+-+++..-+..+.+ ++..++||+||...=
T Consensus 203 C~m~l~~~~~~~V~~-~d~iv~CP~CgRILy 232 (239)
T COG1579 203 CHMKLPSQTLSKVRK-KDEIVFCPYCGRILY 232 (239)
T ss_pred CeeeecHHHHHHHhc-CCCCccCCccchHHH
Confidence 777777788888875 778999999997543
No 87
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=61.51 E-value=5.3 Score=39.25 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=36.5
Q ss_pred eeeccccccc-CCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 356 LVCYITKELM-DTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 356 ~~Cpis~~~~-~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
+.|||-.+-+ +....|-+++|||......++++.. ++ ..||.|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~--~~-y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC--EG-YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhc--cC-CCCCcccc
Confidence 3388888888 4556677799999999999999863 34 99999988
No 88
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.31 E-value=3.6 Score=32.42 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=35.4
Q ss_pred CCCCceecc-CCccccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 367 TENPPQVLP-NGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 367 ~~NpP~~lp-~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
+++-|+++- |-|.+-.-+|.++....+++-.||.|.++|.+.+
T Consensus 41 gDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~e 84 (84)
T KOG1493|consen 41 GDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFKE 84 (84)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEecC
Confidence 467788764 8899999999998876778899999999987653
No 89
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=60.25 E-value=1.3e+02 Score=27.22 Aligned_cols=105 Identities=11% Similarity=-0.029 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHH--HHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhcc-chHHHHh
Q 014891 145 RVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEV--FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK-SKFEFQL 221 (416)
Q Consensus 145 ~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~--f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~-S~LeF~L 221 (416)
....-+++|+++.|..+.|.....+.- +..+.... =.-++-|+=+|..||+..+..++...+.-+.+.+ -....+|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 444678999999998877666544321 11112221 2235668889999999999999999988887743 4677788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhccccc
Q 014891 222 RLQEFIELVRGENNLRAITYARKYLAPWG 250 (416)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~~ 250 (416)
+.-+.+-.+..+++.+|-...-.-.+.|.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 99999999999999888776665555554
No 90
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=60.05 E-value=1.4 Score=30.57 Aligned_cols=26 Identities=19% Similarity=0.537 Sum_probs=17.9
Q ss_pred ccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 374 LPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
-.|||++.. +..++. .....||.||.
T Consensus 9 ~~Cg~~fe~--~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 9 EECGHEFEV--LQSISE--DDPVPCPECGS 34 (42)
T ss_pred CCCCCEEEE--EEEcCC--CCCCcCCCCCC
Confidence 358888743 344543 56789999997
No 91
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.00 E-value=5.9 Score=41.00 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=35.5
Q ss_pred CCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 353 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 353 hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
-|-|-|-|...- -=||+++||||-+|..+|.+... -.-.||.|..++.
T Consensus 82 ~sef~c~vc~~~---l~~pv~tpcghs~c~~Cl~r~ld---~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 82 RSEFECCVCSRA---LYPPVVTPCGHSFCLECLDRSLD---QETECPLCRDELV 129 (398)
T ss_pred cchhhhhhhHhh---cCCCccccccccccHHHHHHHhc---cCCCCcccccccc
Confidence 455666666333 44599999999999999988543 4568999988775
No 92
>PF14353 CpXC: CpXC protein
Probab=59.98 E-value=7.8 Score=33.23 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCceecCCCCcccCcC
Q 014891 383 KALEEMAKKNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 383 ~al~~l~~~~~~~~~CP~~~~~~~~~ 408 (416)
+..+++....=..++||.||..+...
T Consensus 26 ~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 26 ELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred HHHHHHHcCCcCEEECCCCCCceecC
Confidence 44455553334579999999999763
No 93
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=59.73 E-value=4.5 Score=41.27 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=37.0
Q ss_pred eeecccccccCCCCCce-eccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 356 LVCYITKELMDTENPPQ-VLPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~-~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
+.|-..||....-|--+ .|||-|++-.+++.++..++ +.-.||.|.+
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-~~rsCP~Crk 413 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN-GTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC-CCCCCccHHH
Confidence 57888888886544433 49999999999999998655 4569999984
No 94
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=59.59 E-value=83 Score=33.22 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhc---------------C-chhhhhccHHHHHHHHH
Q 014891 89 DDAVNHLTSLVSR-LQGLKRKLEEGSRTEHLQAQKCRARLNHLESA---------------D-AENLAEWNNTRVKRILV 151 (416)
Q Consensus 89 ~~~~~~l~~li~k-l~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~---------------~-~~~~~~w~~~~lnrlI~ 151 (416)
++..+.|+.+... ++++++.+++.+.++-+-.....++|..+... . +-....|-...|.++|-
T Consensus 127 ~~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGEv~Le~ILe 206 (448)
T COG1322 127 QQNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGEVQLERILE 206 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHH
Confidence 3455566665544 56777788777766665555555555444311 1 33367899999999999
Q ss_pred HHHHHcChH
Q 014891 152 DYMLRMSYY 160 (416)
Q Consensus 152 dyLlR~Gy~ 160 (416)
+.+++.||.
T Consensus 207 ~~gl~~~~e 215 (448)
T COG1322 207 DSGLREGYE 215 (448)
T ss_pred HhCchhccc
Confidence 999999984
No 95
>PF04641 Rtf2: Rtf2 RING-finger
Probab=59.02 E-value=13 Score=36.03 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=44.1
Q ss_pred CCCCCCCCeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCccc----CcCCceeccc
Q 014891 347 PYSKQHHSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVC----NYSDLVKAYI 415 (416)
Q Consensus 347 P~~~~~hS~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~----~~~~~~kvyi 415 (416)
+...+.+....|++|++.+.. ||+ =..|++|.+++|.++.-..... +..+..+ .+.|+..|-|
T Consensus 26 ~~~~~~~~w~~CaLS~~pL~~---PiV~d~~G~LynKeaile~Ll~~~~~---~~~~~~~~hI~~LKDl~~l~~ 93 (260)
T PF04641_consen 26 KEEEREARWTHCALSQQPLED---PIVSDRLGRLYNKEAILEFLLDKKKN---KDLPKTFSHIKSLKDLVELKF 93 (260)
T ss_pred HhHHhhCCcCcccCcCCccCC---CeeeCCCCeeEcHHHHHHHHHhcCcC---CCCccccccccCccceeeEEe
Confidence 334566777899999999988 775 6799999999999876543211 3333333 5677776654
No 96
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.83 E-value=5.5 Score=39.38 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=30.2
Q ss_pred CCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcC
Q 014891 369 NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 369 NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~ 408 (416)
|-|+.|+|||+++.-+|+--.+ +++-.||.|-..+..+
T Consensus 18 n~Pv~l~C~HkFCyiCiKGsy~--ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 18 NCPVNLYCFHKFCYICIKGSYK--NDKKTCAVCRFPIDST 55 (324)
T ss_pred CcCccccccchhhhhhhcchhh--cCCCCCceecCCCCcc
Confidence 5578899999999999975432 4577899999888654
No 97
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=58.33 E-value=6.1 Score=40.47 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=33.7
Q ss_pred CCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 366 DTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 366 ~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
.++|--|. -||||..+..+|..|.. +++--.||.|.-+.+-.+..-|
T Consensus 376 aendKdvkIEPCGHLlCt~CLa~WQ~-sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 376 AENDKDVKIEPCGHLLCTSCLAAWQD-SDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred hccCCCcccccccchHHHHHHHhhcc-cCCCCCCCceeeEeccccceee
Confidence 34554555 69999999999999954 3334599999888766554443
No 98
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=58.14 E-value=4.8 Score=27.78 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=10.3
Q ss_pred CceecCCCCccc
Q 014891 394 GKITCPRTGLVC 405 (416)
Q Consensus 394 ~~~~CP~~~~~~ 405 (416)
+.+.||||+..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 469999999876
No 99
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=57.99 E-value=4.7 Score=23.49 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.8
Q ss_pred eecCCCCcccCcC
Q 014891 396 ITCPRTGLVCNYS 408 (416)
Q Consensus 396 ~~CP~~~~~~~~~ 408 (416)
++||+|++.|...
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 5799999999754
No 100
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=56.69 E-value=21 Score=28.56 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHhCCCCc
Q 014891 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQDL 175 (416)
Q Consensus 143 ~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~ 175 (416)
...++.+|.+||--+||.-|+..|..|+|....
T Consensus 18 g~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 18 GRLINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred hHHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 346899999999999999999999999998754
No 101
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.47 E-value=9.7 Score=38.95 Aligned_cols=58 Identities=28% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceecc
Q 014891 344 SPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAY 414 (416)
Q Consensus 344 ~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvy 414 (416)
..||+.|+. ++..+ .+.||..+.|.||.-.+|--|.++-+ +-|.+|+.....++.++-
T Consensus 36 krLP~~hC~-------lt~~P---fe~PvC~~dg~vFd~~~Ivp~lkk~g---~nP~tG~kl~~~dLIkL~ 93 (518)
T KOG0883|consen 36 KRLPFNHCS-------LTMLP---FEDPVCTVDGTVFDLTAIVPWLKKHG---TNPITGQKLDGKDLIKLK 93 (518)
T ss_pred ccCChhhce-------ecccc---ccCcccccCCcEEeeehhhHHHHHcC---CCCCCCCccccccceeee
Confidence 467776644 44334 44588888899998888888776532 335555555555544443
No 102
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.95 E-value=2.3 Score=42.82 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=42.2
Q ss_pred ccCCCCCCCCCCCeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCccc
Q 014891 342 LASPLPYSKQHHSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 405 (416)
Q Consensus 342 l~~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~ 405 (416)
++++|- .+|+-|+|||....+.. -|+ --|+|-|+.++|.+-.+.+ --.||.|.+..
T Consensus 33 i~~~l~---~~~~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~g--n~ecptcRk~l 89 (381)
T KOG0311|consen 33 IMVDLA---MFDIQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSG--NNECPTCRKKL 89 (381)
T ss_pred heecHH---HhhhhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhc--CCCCchHHhhc
Confidence 444443 48899999999888865 455 4599999999998765433 35899998765
No 103
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=55.32 E-value=7.3 Score=26.17 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=13.3
Q ss_pred hCCCceecCCCCcccC
Q 014891 391 KNNGKITCPRTGLVCN 406 (416)
Q Consensus 391 ~~~~~~~CP~~~~~~~ 406 (416)
..+++++||.|+..|.
T Consensus 21 ~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 21 AGGRKVRCPKCGHVFR 36 (37)
T ss_pred cCCcEEECCCCCcEee
Confidence 3567999999999886
No 104
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=54.95 E-value=11 Score=36.93 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCCCCchhhhcccCCCCC---CCCCCC-eeeecccccccC-------------CCCCceeccCCccccHHHHHH-HHH-
Q 014891 330 KEDPLSQESFRKLASPLPY---SKQHHS-KLVCYITKELMD-------------TENPPQVLPNGYVYSTKALEE-MAK- 390 (416)
Q Consensus 330 ~~~P~c~~~~~~l~~~LP~---~~~~hS-~~~Cpis~~~~~-------------~~NpP~~lp~G~V~s~~al~~-l~~- 390 (416)
..|++|.+.. +.+|- --++|. -+.|+|.|+-++ ++-|...--||..|..++=.+ -.+
T Consensus 162 ~~C~~C~K~Y----vSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQT 237 (279)
T KOG2462|consen 162 FSCKYCGKVY----VSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQT 237 (279)
T ss_pred ccCCCCCcee----eehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHh
Confidence 5688887753 34443 135777 689999999887 455544456888887665332 111
Q ss_pred -hCCCceecCCCCcccCc
Q 014891 391 -KNNGKITCPRTGLVCNY 407 (416)
Q Consensus 391 -~~~~~~~CP~~~~~~~~ 407 (416)
.+..++.|++|++.|..
T Consensus 238 HS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 238 HSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred hcCCccccCcchhhHHHH
Confidence 13457899999999864
No 105
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.30 E-value=7.4 Score=43.47 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.0
Q ss_pred cee-ccCCccccHHHHHHHHHhCCCceecCCCCccc
Q 014891 371 PQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 405 (416)
Q Consensus 371 P~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~ 405 (416)
|++ +-|||.|-+.+++ ++..+||.|.-+.
T Consensus 853 P~VhF~CgHsyHqhC~e------~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 853 PFVHFLCGHSYHQHCLE------DKEDKCPKCLPEL 882 (933)
T ss_pred ceeeeecccHHHHHhhc------cCcccCCccchhh
Confidence 555 9999999999997 4578999998743
No 106
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=54.05 E-value=1.5e+02 Score=25.97 Aligned_cols=75 Identities=11% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHhhhHHHHHhHHHHHHHHHHhhhc---CCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 014891 57 KTIRTNHRAVEKEITSVISNVADVSDS---ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (416)
Q Consensus 57 k~fr~~qk~ieke~~~v~~~~~~l~~~---~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~ 131 (416)
-.|+...+.+-+.+..-.+.|..|-.+ -+.+.++..+.|..|-+.++...+++.+.+++-+.++..+...|..++
T Consensus 65 ~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 65 EEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666665555555554432 246778889999999999999999999999888888888888877654
No 107
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=53.99 E-value=1.6e+02 Score=32.14 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014891 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKS 213 (416)
Q Consensus 182 ~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~ 213 (416)
..+..+..++.+|++-.|++++.+-+..|...
T Consensus 110 ~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l 141 (593)
T PF06248_consen 110 ELLEEVEEALKEGNYLDAADLLEELKSLLDDL 141 (593)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 34566777888999999999999999988875
No 108
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=53.50 E-value=7.5 Score=32.81 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.4
Q ss_pred CceecCCCCcccCcC
Q 014891 394 GKITCPRTGLVCNYS 408 (416)
Q Consensus 394 ~~~~CP~~~~~~~~~ 408 (416)
.-++|||||.+|..+
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 457899999999877
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=53.35 E-value=4.6 Score=44.67 Aligned_cols=76 Identities=8% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCCCCchhhhcc---cCCCCCCCCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCc
Q 014891 331 EDPLSQESFRKL---ASPLPYSKQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 407 (416)
Q Consensus 331 ~~P~c~~~~~~l---~~~LP~~~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~ 407 (416)
.|++|+.++.+= --.+|...+.|+ -||++-.-+.+-------+|||.|+..+|..|++. .-+||.|..+|..
T Consensus 98 Ss~~C~~E~S~~~ds~~i~P~~~~~~~--~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~---aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 98 TSPVCEKEHSPDVDSSNICPVQTHVEN--QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC---AQTCPVDRGEFGE 172 (1134)
T ss_pred ccchhheecCCcccccCcCchhhhhhh--hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh---cccCchhhhhhhe
Confidence 366776666541 112333334443 35555444432111122689999999999999864 3599999999976
Q ss_pred CCce
Q 014891 408 SDLV 411 (416)
Q Consensus 408 ~~~~ 411 (416)
-.+.
T Consensus 173 v~V~ 176 (1134)
T KOG0825|consen 173 VKVL 176 (1134)
T ss_pred eeee
Confidence 5543
No 110
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=53.07 E-value=1e+02 Score=33.54 Aligned_cols=113 Identities=15% Similarity=0.235 Sum_probs=46.1
Q ss_pred ccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHH
Q 014891 48 LRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSR----LQGLKRKLEEGSRTEHLQAQKC 123 (416)
Q Consensus 48 ~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~k----l~~lkrkl~~~~~~e~~~~~~~ 123 (416)
+-+.-..|.+|.+..-..+.+-+.++...|..... ++.++..++.. |+.|-.+|...-..=...++.+
T Consensus 239 val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~--------Al~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~dI 310 (610)
T PF01601_consen 239 VALQTDVLQENQKIIANSFNKAIGNIQLGFTTTAS--------ALNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQDI 310 (610)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 45566778888877777777777777766655443 34444444443 4444445544444334556677
Q ss_pred HHHHHhhhh-cCchhhhhccHHHHHHHHHHHHHHcChHHHHHHHHH
Q 014891 124 RARLNHLES-ADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAE 168 (416)
Q Consensus 124 ~~Rl~~L~~-~~~~~~~~w~~~~lnrlI~dyLlR~Gy~etA~~l~~ 168 (416)
..||+.|.. .+.+.+..-.-..||-.+.+.|.+.--......|++
T Consensus 311 y~RLd~leAdaQVDRLItGRL~aLnafVtq~l~~~~evr~sr~LA~ 356 (610)
T PF01601_consen 311 YNRLDQLEADAQVDRLITGRLAALNAFVTQQLTKYTEVRASRQLAQ 356 (610)
T ss_dssp HHHHHHHHHH------------------------------------
T ss_pred HHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888762 223333333334455555555555554444444443
No 111
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=52.51 E-value=3 Score=25.60 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=12.4
Q ss_pred ceecCCCCcccCcCCc
Q 014891 395 KITCPRTGLVCNYSDL 410 (416)
Q Consensus 395 ~~~CP~~~~~~~~~~~ 410 (416)
.+.||.|+..|..+.+
T Consensus 2 l~~C~~CgR~F~~~~l 17 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRL 17 (25)
T ss_pred CCcCCCCCCEECHHHH
Confidence 3689999999976544
No 112
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=52.27 E-value=1.5e+02 Score=25.25 Aligned_cols=35 Identities=3% Similarity=-0.017 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 014891 69 EITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQ 103 (416)
Q Consensus 69 e~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~ 103 (416)
--......|.+|-+.|..+.++....++.++++++
T Consensus 20 ~~ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 20 VQEEGSKFFNRLVKEGELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33445566777777777888888888888888877
No 113
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.98 E-value=6.8 Score=43.95 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHh
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESS 170 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~es 170 (416)
+..+.+|..|+.+..|.++-+.|.++.
T Consensus 531 ~d~~~vv~~~~q~e~yeeaLevL~~~~ 557 (911)
T KOG2034|consen 531 KDYEFVVSYWIQQENYEEALEVLLNQR 557 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 556677777788888888888877663
No 114
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.27 E-value=5 Score=41.11 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCc
Q 014891 366 DTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 407 (416)
Q Consensus 366 ~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~ 407 (416)
.++..|++ |.||||.+....-.-.......-.||.|-++-..
T Consensus 298 ~~~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 298 PDERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------
T ss_pred ccccCceeeccccceeeecccccccccccccccCCCccccCCc
Confidence 34555666 8999999988775433222346799999887654
No 115
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.07 E-value=30 Score=29.63 Aligned_cols=21 Identities=19% Similarity=0.566 Sum_probs=17.9
Q ss_pred CcccHHHHHHHHHHHHHHHhCC
Q 014891 280 EPKQWDFLVDQFKQEFCKLYGM 301 (416)
Q Consensus 280 ~~~rw~~L~~~F~~~~~~l~gl 301 (416)
++ .|+.++..|..-|+.++.-
T Consensus 3 d~-~~e~v~~~FvqhYY~~FD~ 23 (126)
T KOG2104|consen 3 DP-VYEAVAKAFVQHYYSLFDN 23 (126)
T ss_pred Cc-cHHHHHHHHHHHHHHHhcC
Confidence 45 7999999999999988873
No 116
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.05 E-value=11 Score=36.33 Aligned_cols=32 Identities=25% Similarity=0.534 Sum_probs=26.9
Q ss_pred CCeeeecccccccCCCCCceeccCCccccHHHHHH
Q 014891 353 HSKLVCYITKELMDTENPPQVLPNGYVYSTKALEE 387 (416)
Q Consensus 353 hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~ 387 (416)
.+.=.|.++.+++-+ ||.-|.||+|.++||.+
T Consensus 41 K~FdcCsLtLqPc~d---Pvit~~GylfdrEaILe 72 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRD---PVITPDGYLFDREAILE 72 (303)
T ss_pred CCcceeeeecccccC---CccCCCCeeeeHHHHHH
Confidence 344578888888876 99999999999999976
No 117
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=50.91 E-value=19 Score=33.47 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=35.2
Q ss_pred CCCCCeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceeccc
Q 014891 350 KQHHSKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKAYI 415 (416)
Q Consensus 350 ~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kvyi 415 (416)
-.+.-|.+||.||+++.++- |-=-.+|+=.|.. +||.--+...--.++|-|+
T Consensus 82 E~TkkIYICPFTGKVF~DNt--------~~nPQDAIYDWvS------kCPeN~ER~~G~rVKRF~V 133 (238)
T PF10915_consen 82 EQTKKIYICPFTGKVFGDNT--------HPNPQDAIYDWVS------KCPENTERQGGVRVKRFFV 133 (238)
T ss_pred cccceEEEcCCcCccccCCC--------CCChHHHHHHHHh------hCCccchhccCeEEEEEee
Confidence 46778999999999997632 2234688888863 6777666555555555444
No 118
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=50.89 E-value=15 Score=26.79 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=24.7
Q ss_pred ccCCccccHHHHHHHHHhCCCceecCCCCcc
Q 014891 374 LPNGYVYSTKALEEMAKKNNGKITCPRTGLV 404 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~ 404 (416)
--|+-.++...+.++. +++..+.||.|+..
T Consensus 26 ~gC~~~l~~~~~~~i~-~~~~i~~Cp~CgRi 55 (56)
T PF02591_consen 26 SGCHMELPPQELNEIR-KGDEIVFCPNCGRI 55 (56)
T ss_pred CCCCEEcCHHHHHHHH-cCCCeEECcCCCcc
Confidence 3588999999999995 44678999999863
No 119
>PRK11032 hypothetical protein; Provisional
Probab=50.88 E-value=1.2e+02 Score=27.45 Aligned_cols=16 Identities=13% Similarity=0.220 Sum_probs=9.4
Q ss_pred HHHHHHHcChHHHHHH
Q 014891 150 LVDYMLRMSYYETAEK 165 (416)
Q Consensus 150 I~dyLlR~Gy~etA~~ 165 (416)
+.+-|-++|.|.+++.
T Consensus 104 l~~dl~h~g~Y~sGEv 119 (160)
T PRK11032 104 VFQDLNHHGVYHSGEV 119 (160)
T ss_pred HHHHhhhcCeeeccee
Confidence 4455556677666554
No 120
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=50.83 E-value=1.3e+02 Score=30.04 Aligned_cols=87 Identities=21% Similarity=0.232 Sum_probs=50.6
Q ss_pred ccccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcC--CC---ChhHH--HHHHHHHHHHHHHHHHHHHhh----hH
Q 014891 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE--NF---SKDDA--VNHLTSLVSRLQGLKRKLEEG----SR 114 (416)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~--~~---~~~~~--~~~l~~li~kl~~lkrkl~~~----~~ 114 (416)
..++.+++.|....+.....++.+-........++.... .+ ...+. ...-..+++||+.+++.=+.. .+
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999998877777777665544433333333210 00 00011 123355777777777665443 35
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014891 115 TEHLQAQKCRARLNHLES 132 (416)
Q Consensus 115 ~e~~~~~~~~~Rl~~L~~ 132 (416)
+|.-+.+.+.++|..|..
T Consensus 103 EEE~ltn~L~rkl~qLr~ 120 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQ 120 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677777888888763
No 121
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=50.30 E-value=7.8 Score=22.19 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=8.6
Q ss_pred eecCCCCcccCcC
Q 014891 396 ITCPRTGLVCNYS 408 (416)
Q Consensus 396 ~~CP~~~~~~~~~ 408 (416)
+.||+|+..|.-.
T Consensus 1 ~~C~~C~~~~~~~ 13 (24)
T PF13894_consen 1 FQCPICGKSFRSK 13 (24)
T ss_dssp EE-SSTS-EESSH
T ss_pred CCCcCCCCcCCcH
Confidence 4799999998754
No 122
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.28 E-value=12 Score=36.80 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=29.0
Q ss_pred ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCce
Q 014891 374 LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLV 411 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~ 411 (416)
=||||-.++.++..+.. -|.--||.|+.....+.++
T Consensus 21 n~C~H~lCEsCvd~iF~--~g~~~CpeC~~iLRk~nfr 56 (300)
T KOG3800|consen 21 NECGHRLCESCVDRIFS--LGPAQCPECMVILRKNNFR 56 (300)
T ss_pred ccccchHHHHHHHHHHh--cCCCCCCcccchhhhcccc
Confidence 49999999999999975 4567899999877665543
No 123
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.81 E-value=5.4 Score=26.07 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=14.2
Q ss_pred ccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 374 LPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
..||++|..+. ...+||.|+.
T Consensus 5 ~~CGy~y~~~~---------~~~~CP~Cg~ 25 (33)
T cd00350 5 PVCGYIYDGEE---------APWVCPVCGA 25 (33)
T ss_pred CCCCCEECCCc---------CCCcCcCCCC
Confidence 35777775433 3469999986
No 124
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=49.60 E-value=8.7 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=12.2
Q ss_pred CCCceecCCCCcccC
Q 014891 392 NNGKITCPRTGLVCN 406 (416)
Q Consensus 392 ~~~~~~CP~~~~~~~ 406 (416)
+...++||+|++.|.
T Consensus 11 ~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 11 GEKPYKCPYCGKSFS 25 (26)
T ss_dssp SSSSEEESSSSEEES
T ss_pred CCCCCCCCCCcCeeC
Confidence 445699999999885
No 125
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.35 E-value=13 Score=37.96 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=22.6
Q ss_pred cCCccccHHHHHHHHHhCCCceecCCCC
Q 014891 375 PNGYVYSTKALEEMAKKNNGKITCPRTG 402 (416)
Q Consensus 375 p~G~V~s~~al~~l~~~~~~~~~CP~~~ 402 (416)
.|||||-..+|.+|....-..-.||.|.
T Consensus 25 ~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred chhhHHHHHHHHHHHccCCccCCCCcee
Confidence 5999999999999986432235899998
No 126
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=49.05 E-value=1.8e+02 Score=25.34 Aligned_cols=71 Identities=7% Similarity=0.096 Sum_probs=46.2
Q ss_pred hhhhcccccccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcC-CCChhHHHHHHHHHHHHHHHHHHHH
Q 014891 39 EALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKL 109 (416)
Q Consensus 39 ~~~~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~l~~li~kl~~lkrkl 109 (416)
+.+.-++|..+---+.+++.+...++.++..-..+.....++.+.. ..+.++....-..+-.+.+.+++..
T Consensus 25 ~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 25 DKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888888888888888888888888888877777776632 3555555444444444444444443
No 127
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=48.74 E-value=1.6e+02 Score=24.49 Aligned_cols=66 Identities=9% Similarity=0.233 Sum_probs=35.2
Q ss_pred HHHHHhHHHHHHHHHHhhhc---CCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 014891 64 RAVEKEITSVISNVADVSDS---ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (416)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~---~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~ 131 (416)
+.+-.++..|...|.+|... -..+..+. ..+..|+..-+.+| +-.-...++..-..-++..|.||+
T Consensus 25 k~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey-~~i~~I~~eY~k~K-k~~p~y~~~K~Rc~yL~~KL~HIK 93 (101)
T PF07303_consen 25 KELHAEVDAVSRRFQELDSELKRLPPGSQEY-KRIAQILQEYNKKK-KRDPNYQEKKKRCEYLHNKLSHIK 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-TTSHHH-HHHH---HHHHHHH-HTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHH
Confidence 55667777788888877651 11122222 23336666666655 334445555555666666777766
No 128
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=48.51 E-value=79 Score=24.26 Aligned_cols=50 Identities=16% Similarity=0.036 Sum_probs=30.1
Q ss_pred HHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChHHHHHHHHH
Q 014891 189 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARK 244 (416)
Q Consensus 189 ~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~ 244 (416)
-..+.|+...|+.|++. ..... .. +..+...---+++.|+..+||.+..+
T Consensus 34 ~~~~~~~y~~A~~~~~~--~~~~~--~~--~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 34 CYFQQGKYEEAIELLQK--LKLDP--SN--PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHTTHHHHHHHHHHC--HTHHH--CH--HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH--hCCCC--CC--HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 34468999999999987 22222 22 22222223345566899999988764
No 129
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=48.47 E-value=1.2e+02 Score=29.86 Aligned_cols=69 Identities=20% Similarity=0.408 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH----------HHHHHHHHHHhhhhcCchhhhhccH--HHHHHHHHHHHHHcC
Q 014891 91 AVNHLTSLVSRLQGLKRKLEEGSRTEHL----------QAQKCRARLNHLESADAENLAEWNN--TRVKRILVDYMLRMS 158 (416)
Q Consensus 91 ~~~~l~~li~kl~~lkrkl~~~~~~e~~----------~~~~~~~Rl~~L~~~~~~~~~~w~~--~~lnrlI~dyLlR~G 158 (416)
....|..+..+++.++.+|+....+|.. -+.+.++|++.|+++-+....+|.+ .+|..+---||+|.-
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~ 189 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFH 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888899999999887766653 3666778888888877555444443 567777777777754
Q ss_pred h
Q 014891 159 Y 159 (416)
Q Consensus 159 y 159 (416)
.
T Consensus 190 n 190 (338)
T KOG3647|consen 190 N 190 (338)
T ss_pred h
Confidence 3
No 130
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.34 E-value=69 Score=30.65 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcChHHHHHHHHHHhCCCCc---ccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhh
Q 014891 146 VKRILVDYMLRMSYYETAEKLAESSNIQDL---VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRL 210 (416)
Q Consensus 146 lnrlI~dyLlR~Gy~etA~~l~~esgi~~~---~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L 210 (416)
=.|+.+.++...|..+.|..+..+..-+-+ .++..+....+..+.|+.|.++.||++++..-...
T Consensus 66 ~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~ 133 (228)
T KOG2659|consen 66 DERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPF 133 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc
Confidence 358888999999999999999887653321 23455677778999999999999999998774433
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=47.15 E-value=80 Score=22.80 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=39.3
Q ss_pred HhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHHH
Q 014891 191 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 262 (416)
Q Consensus 191 L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm~ 262 (416)
+..|+++.|++.++..-.. ...+.+..+ .-..=+++.|+..+|..+..+-+....+ -.+++.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~--~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARL--LLAQCYLKQGQYDEAEELLERLLKQDPD--NPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHH--HHHHHHHHTT-HHHHHHHHHCCHGGGTT--HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHCcC--HHHHHHHHh
Confidence 6789999999988766322 222333333 2334467789999999998865544332 245555554
No 132
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=46.58 E-value=2.6e+02 Score=27.90 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 014891 90 DAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHL 130 (416)
Q Consensus 90 ~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L 130 (416)
+++..|+.=-++...|||.-+-+.+-.+..+..+++-|.|+
T Consensus 215 EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~f 255 (302)
T PF07139_consen 215 EAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHF 255 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 34444444444444455444444443333344444444444
No 133
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=46.07 E-value=16 Score=27.46 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=8.3
Q ss_pred ceecCCCCcccCcCCc
Q 014891 395 KITCPRTGLVCNYSDL 410 (416)
Q Consensus 395 ~~~CP~~~~~~~~~~~ 410 (416)
...||.|+..|...|-
T Consensus 26 ~L~c~~~~~aYpI~dG 41 (60)
T COG2835 26 ELICPRCKLAYPIRDG 41 (60)
T ss_pred EEEecccCceeecccC
Confidence 3455555555555443
No 134
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=45.74 E-value=12 Score=26.75 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCCCCCCchhhhcccCCCCCC---CCCCCeeeeccccccc
Q 014891 329 TKEDPLSQESFRKLASPLPYS---KQHHSKLVCYITKELM 365 (416)
Q Consensus 329 ~~~~P~c~~~~~~l~~~LP~~---~~~hS~~~Cpis~~~~ 365 (416)
.+.|+.|..+..--..+||+. ..-+|+++|..-.+|+
T Consensus 7 ~~kCELC~a~~~L~vy~Vpp~~~~~~d~~iliC~tC~~Qi 46 (47)
T smart00782 7 ESKCELCGSDSPLVVYAVPPSSDVTADNSVMLCDTCHSQI 46 (47)
T ss_pred CCcccCcCCCCCceEEecCCCCCCCccceeeechHHHHhh
Confidence 467999987543333478774 4578999999888775
No 135
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.32 E-value=2.7e+02 Score=26.06 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHhh---hHHHHHhHHHH
Q 014891 49 RVPFEHYKKTIRTN---HRAVEKEITSV 73 (416)
Q Consensus 49 ~vP~E~l~k~fr~~---qk~ieke~~~v 73 (416)
..|-|.||+|-|.. .+.+|||...+
T Consensus 8 ~tp~e~Lr~nqRal~~a~ReleRer~~l 35 (224)
T KOG3230|consen 8 KTPAELLRENQRALNKATRELERERQKL 35 (224)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46999999998864 56678887654
No 136
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=44.16 E-value=18 Score=32.29 Aligned_cols=28 Identities=29% Similarity=0.603 Sum_probs=20.7
Q ss_pred cCCccc-----cHHHHHHHHHhCCCceecCCCCcc
Q 014891 375 PNGYVY-----STKALEEMAKKNNGKITCPRTGLV 404 (416)
Q Consensus 375 p~G~V~-----s~~al~~l~~~~~~~~~CP~~~~~ 404 (416)
.|||+| |..+.++..+ .|.+.||+||..
T Consensus 9 ~~gH~FEgWF~ss~~fd~Q~~--~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFEGWFRSSAAFDRQQA--RGLVSCPVCGST 41 (148)
T ss_pred CCCCccceecCCHHHHHHHHH--cCCccCCCCCCC
Confidence 366766 5677777754 468999999975
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=44.10 E-value=1.8e+02 Score=23.92 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=34.2
Q ss_pred HHHHHHHHHcChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhh
Q 014891 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKS 208 (416)
Q Consensus 148 rlI~dyLlR~Gy~etA~~l~~es-gi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~ 208 (416)
..++.-+++.|.++.|....+.. .+. ..+.+.+..+..+. ...|+.+.|+.|.+..-.
T Consensus 55 ~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 55 LGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL--LALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH--HHcCCHHHHHHHHHHHHH
Confidence 45677777778777777654443 332 22444444433332 346899999998865533
No 138
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=44.03 E-value=13 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.659 Sum_probs=14.1
Q ss_pred CceecCCCCcccCcCCc
Q 014891 394 GKITCPRTGLVCNYSDL 410 (416)
Q Consensus 394 ~~~~CP~~~~~~~~~~~ 410 (416)
+.++||.||..|.....
T Consensus 12 ~~~~C~~CgM~Y~~~~~ 28 (41)
T PF13878_consen 12 GATTCPTCGMLYSPGSP 28 (41)
T ss_pred CCcCCCCCCCEECCCCH
Confidence 57899999999987654
No 139
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=43.82 E-value=22 Score=32.11 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=28.1
Q ss_pred ccCCc-----cccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 374 LPNGY-----VYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 374 lp~G~-----V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
-||.. ..-+++|++|... ++...||.|+.+|....
T Consensus 23 ~PC~CkGs~k~VH~sCL~rWi~~-s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 23 NYCNCKNENKIVHKECLEEWINT-SKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCcccCCCchHHHHHHHHHHHhc-CCCCcccccCCeEEEEE
Confidence 47776 5678999999864 46789999999998764
No 140
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.61 E-value=8.5 Score=41.73 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=19.0
Q ss_pred CCCceeccCCccccHHHHHHHH
Q 014891 368 ENPPQVLPNGYVYSTKALEEMA 389 (416)
Q Consensus 368 ~NpP~~lp~G~V~s~~al~~l~ 389 (416)
.=-|+.|-|||++++.+++.+-
T Consensus 25 ~~~Pvsl~cghtic~~c~~~ly 46 (861)
T KOG3161|consen 25 RLEPVSLQCGHTICGHCVQLLY 46 (861)
T ss_pred hcCcccccccchHHHHHHHhHh
Confidence 3348889999999999999985
No 141
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=43.32 E-value=3.7 Score=34.05 Aligned_cols=32 Identities=16% Similarity=-0.017 Sum_probs=13.8
Q ss_pred CCCCCeeeecccccccCCCCCceeccCCcccc
Q 014891 350 KQHHSKLVCYITKELMDTENPPQVLPNGYVYS 381 (416)
Q Consensus 350 ~~~hS~~~Cpis~~~~~~~NpP~~lp~G~V~s 381 (416)
..-|..-.|.+|...+.+-+-=+-.-||..+.
T Consensus 35 ~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 35 ENGHVWPRCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred CCCCEEeeeeeeeeeeccCCeeEcCCCCCEEe
Confidence 44566777788877776644322244555443
No 142
>PF14255 Cys_rich_CPXG: Cysteine-rich CPXCG
Probab=43.27 E-value=8.9 Score=28.01 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=9.7
Q ss_pred eecCCCCcccCc
Q 014891 396 ITCPRTGLVCNY 407 (416)
Q Consensus 396 ~~CP~~~~~~~~ 407 (416)
+.|||||+.+..
T Consensus 1 i~CPyCge~~~~ 12 (52)
T PF14255_consen 1 IQCPYCGEPIEI 12 (52)
T ss_pred CCCCCCCCeeEE
Confidence 479999998754
No 143
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=43.19 E-value=1.6e+02 Score=23.17 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=40.2
Q ss_pred HHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 014891 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (416)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~ 112 (416)
-.|..-|.++--++.+...+..+..+ -....+..++||.+-.+|..+..++.+.
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~-~~~v~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESN-LPDVTELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788889999999999888774 2334567778888888888777776543
No 144
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=42.77 E-value=23 Score=35.37 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=18.3
Q ss_pred CCCCCCCCCchhhhcccCCCC--CCCCCCCeeeecccccccCC
Q 014891 327 DCTKEDPLSQESFRKLASPLP--YSKQHHSKLVCYITKELMDT 367 (416)
Q Consensus 327 ~~~~~~P~c~~~~~~l~~~LP--~~~~~hS~~~Cpis~~~~~~ 367 (416)
+....||+|-.. |..--|= ....-+=.+.|+..+.+..-
T Consensus 182 ~~~~~CPvCGs~--P~~s~~~~~~~~~G~RyL~CslC~teW~~ 222 (305)
T TIGR01562 182 ESRTLCPACGSP--PVASMVRQGGKETGLRYLSCSLCATEWHY 222 (305)
T ss_pred CCCCcCCCCCCh--hhhhhhcccCCCCCceEEEcCCCCCcccc
Confidence 445689999442 1111110 01122335667766666543
No 145
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=42.43 E-value=3.5e+02 Score=26.73 Aligned_cols=99 Identities=13% Similarity=-0.028 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchH-HHHhHHH
Q 014891 146 VKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKF-EFQLRLQ 224 (416)
Q Consensus 146 lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~L-eF~Lr~q 224 (416)
....++..+.+.|.++.|..+.++.--....+...+..+ +.-....|+++.|+++....... ...+... .-..+..
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQL--LEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHH--HHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHH
Confidence 445567777788888887776555421122222222222 22234578888888877654221 1111110 1111112
Q ss_pred HHHHHHhcCChHHHHHHHHHhcc
Q 014891 225 EFIELVRGENNLRAITYARKYLA 247 (416)
Q Consensus 225 ~fIELir~~~~~eAi~yar~~l~ 247 (416)
--.-+.+.|+..+|+.+.++-+.
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Confidence 22233456777888887776543
No 146
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=42.19 E-value=12 Score=27.15 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.8
Q ss_pred ecCCCCcccCcCCc
Q 014891 397 TCPRTGLVCNYSDL 410 (416)
Q Consensus 397 ~CP~~~~~~~~~~~ 410 (416)
.||.|+..|..++-
T Consensus 22 ~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR 35 (54)
T ss_dssp E-TTT--EE-HHHH
T ss_pred cCCCCCCCCCHHHH
Confidence 99999999976543
No 147
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=41.87 E-value=2.1e+02 Score=24.12 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 014891 72 SVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (416)
Q Consensus 72 ~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~ 112 (416)
++...+.++-+.|..+.+++...++.++...+.-+..+.+.
T Consensus 25 k~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K 65 (108)
T COG3937 25 KVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEK 65 (108)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 34444556666788999999999999999988655555443
No 148
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=41.81 E-value=11 Score=25.15 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=11.1
Q ss_pred ceecCCCCcccCcCC
Q 014891 395 KITCPRTGLVCNYSD 409 (416)
Q Consensus 395 ~~~CP~~~~~~~~~~ 409 (416)
.+.||.|+..|..++
T Consensus 2 ~~~CP~C~~~~~v~~ 16 (38)
T TIGR02098 2 RIQCPNCKTSFRVVD 16 (38)
T ss_pred EEECCCCCCEEEeCH
Confidence 367888888877664
No 149
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=41.81 E-value=5.2 Score=28.62 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=16.8
Q ss_pred ccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 374 LPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
..||++|.. +..+. ....+.||.||.
T Consensus 9 ~~Cg~~fe~--~~~~~--~~~~~~CP~Cg~ 34 (52)
T TIGR02605 9 TACGHRFEV--LQKMS--DDPLATCPECGG 34 (52)
T ss_pred CCCCCEeEE--EEecC--CCCCCCCCCCCC
Confidence 358887753 23332 245688999997
No 150
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.51 E-value=3.2e+02 Score=29.75 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=71.9
Q ss_pred ccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 014891 48 LRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARL 127 (416)
Q Consensus 48 ~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl 127 (416)
.--|||.++|. +-.+--|...+.....++.-++-.+-.+....++.+..-++..++++......-.++...|++=.
T Consensus 29 ~~~~~e~l~ke----~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f~ 104 (581)
T KOG2069|consen 29 TTKPLEELRKE----KALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRFQ 104 (581)
T ss_pred cCCcHHHHHhh----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHHH
Confidence 45689999875 23367777778777777766433333345566777777777777777776665556666665545
Q ss_pred HhhhhcC----------chhhhhccHHHHHHHHHHHHHHcChHHHHHHHHH
Q 014891 128 NHLESAD----------AENLAEWNNTRVKRILVDYMLRMSYYETAEKLAE 168 (416)
Q Consensus 128 ~~L~~~~----------~~~~~~w~~~~lnrlI~dyLlR~Gy~etA~~l~~ 168 (416)
++..+++ ......|+--++-++ ++--.|.||++-|-.|..
T Consensus 105 ~~~~~i~e~~~~~~~~l~~~~~l~ellelp~l-M~~cir~~~~~ealel~a 154 (581)
T KOG2069|consen 105 DFAEEISEHRRLNSLTLDKHPQLLELLELPQL-MDRCIRNGYYDEALELAA 154 (581)
T ss_pred HHHHHhhHhHHHHHHHHhhcchhHHHHhHHHH-HHHHHHhhhhhhHHHHHH
Confidence 4444443 111234554444433 346679999988887753
No 151
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.31 E-value=2.5e+02 Score=26.59 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh-cCChHHHHHHHHhhhhhhhhccchHHHHhH
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQ-NKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~-~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr 222 (416)
..+..+=+-+++.+|.++.|-.+.-+..+.. +. ..+|.+.|. +|+-+-|+.+...-++.+... --
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~--~~-----~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~-------~~ 143 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIP--WF-----PDKILQALLRRGDPKLALRYLRAVGPPLSSP-------EA 143 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCc--cc-----HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH-------HH
Confidence 4455555666666677777766664443321 11 114666664 688888888888887776543 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccc
Q 014891 223 LQEFIELVRGENNLRAITYARKYLAP 248 (416)
Q Consensus 223 ~q~fIELir~~~~~eAi~yar~~l~~ 248 (416)
..-++.++..+.+.||..|+|++-.+
T Consensus 144 ~~~~~~~La~~~v~EAf~~~R~~~~~ 169 (226)
T PF13934_consen 144 LTLYFVALANGLVTEAFSFQRSYPDE 169 (226)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCchh
Confidence 22234456678888888888876553
No 152
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=41.23 E-value=21 Score=26.85 Aligned_cols=14 Identities=7% Similarity=0.130 Sum_probs=11.1
Q ss_pred CeeeecccccccCC
Q 014891 354 SKLVCYITKELMDT 367 (416)
Q Consensus 354 S~~~Cpis~~~~~~ 367 (416)
..+.||+.|.++..
T Consensus 31 vtI~CP~HG~~~~s 44 (60)
T PF05265_consen 31 VTIRCPKHGNFTCS 44 (60)
T ss_pred eEEECCCCCcEEec
Confidence 56889999988755
No 153
>PHA02862 5L protein; Provisional
Probab=41.22 E-value=25 Score=31.27 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=33.2
Q ss_pred eecccccccCCCCCceeccCCc-----cccHHHHHHHHHhCCCceecCCCCcccCcC
Q 014891 357 VCYITKELMDTENPPQVLPNGY-----VYSTKALEEMAKKNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~-----V~s~~al~~l~~~~~~~~~CP~~~~~~~~~ 408 (416)
+|.|-.+.-++++ -||++ ..-+++|.+|.. .+++..||.|+.+|...
T Consensus 4 iCWIC~~~~~e~~----~PC~C~GS~K~VHq~CL~~WIn-~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 4 ICWICNDVCDERN----NFCGCNEEYKVVHIKCMQLWIN-YSKKKECNLCKTKYNIK 55 (156)
T ss_pred EEEEecCcCCCCc----ccccccCcchhHHHHHHHHHHh-cCCCcCccCCCCeEEEE
Confidence 3555555544332 46655 677899999984 56789999999999753
No 154
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=41.18 E-value=13 Score=27.42 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=11.8
Q ss_pred ceecCCCCcccCcCC
Q 014891 395 KITCPRTGLVCNYSD 409 (416)
Q Consensus 395 ~~~CP~~~~~~~~~~ 409 (416)
.++||.|+.++.+.+
T Consensus 2 ~~~CP~CG~~iev~~ 16 (54)
T TIGR01206 2 QFECPDCGAEIELEN 16 (54)
T ss_pred ccCCCCCCCEEecCC
Confidence 468999999887765
No 155
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=40.99 E-value=9.4 Score=27.62 Aligned_cols=10 Identities=30% Similarity=0.694 Sum_probs=8.1
Q ss_pred CceecCCCCc
Q 014891 394 GKITCPRTGL 403 (416)
Q Consensus 394 ~~~~CP~~~~ 403 (416)
...+||.|+.
T Consensus 33 ~~w~CP~C~a 42 (50)
T cd00730 33 DDWVCPVCGA 42 (50)
T ss_pred CCCCCCCCCC
Confidence 3679999985
No 156
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=40.98 E-value=1.7e+02 Score=31.25 Aligned_cols=83 Identities=19% Similarity=0.402 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhcC----------------c-hhhhhccHHHHHHHH
Q 014891 88 KDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESAD----------------A-ENLAEWNNTRVKRIL 150 (416)
Q Consensus 88 ~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~~----------------~-~~~~~w~~~~lnrlI 150 (416)
++.+...|.=+=++|..+++++++...++.+....++..|..|.+.. + -....|-.-.|.|++
T Consensus 135 ~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerIL 214 (475)
T PRK10361 135 RQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVL 214 (475)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHH
Confidence 34445556667788999999999999888887777777787776322 1 235789888899999
Q ss_pred HHHHHHcCh-HHHHHHHHHHh
Q 014891 151 VDYMLRMSY-YETAEKLAESS 170 (416)
Q Consensus 151 ~dyLlR~Gy-~etA~~l~~es 170 (416)
-.-.++.|+ |++=..+..+.
T Consensus 215 E~sGL~~~~~y~~Q~~~~~~~ 235 (475)
T PRK10361 215 EASGLREGYEYETQVSIENDA 235 (475)
T ss_pred HHhCCCcCCcceeeeeccCCC
Confidence 888888883 44444444443
No 157
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=40.39 E-value=37 Score=26.05 Aligned_cols=41 Identities=20% Similarity=0.100 Sum_probs=27.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHhccccccccHHHHHHHH
Q 014891 220 QLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVM 261 (416)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~~~~ei~~lm 261 (416)
.|..++|-+|+..|++.+|.+.|-. -+.-.-+..+-|++.-
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~-sP~giLRt~~Ti~rFk 47 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN-SPRGILRTPETINRFK 47 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-SGGGTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh-CccchhcCHHHHHHHH
Confidence 4678999999999999999998874 2221223344455554
No 158
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=40.34 E-value=1.8e+02 Score=23.14 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHhhhHHHHHhH---HHHHHHHHHhhh---cCCCChhHHHHHHHHHHHHHHHHHH
Q 014891 50 VPFEHYKKTIRTNHRAVEKEI---TSVISNVADVSD---SENFSKDDAVNHLTSLVSRLQGLKR 107 (416)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~---~~v~~~~~~l~~---~~~~~~~~~~~~l~~li~kl~~lkr 107 (416)
-|+--+...++.++...|+|. ..|...+.++.. .|..+.++....=+.++.||+.+++
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~~ 70 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEALEAGEISEEEFERREDELLDRLEEARR 70 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 688888889999999999986 455555555544 5789999999999999999998776
No 159
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=40.16 E-value=16 Score=26.24 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCCCchhhhcccCCC-CCCCCCCCe-eeecccccccCCCCCceeccCCccccHHHHHH
Q 014891 332 DPLSQESFRKLASPL-PYSKQHHSK-LVCYITKELMDTENPPQVLPNGYVYSTKALEE 387 (416)
Q Consensus 332 ~P~c~~~~~~l~~~L-P~~~~~hS~-~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~ 387 (416)
|+.|...+.+-+.-+ .....+|.. |.|..-+..+++.. +...+|.+|.+..-.+
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~--~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECFKCSKCGKPLNDGD--FYEKDGKPYCKDCYQK 56 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTSBETTTTCBTTTSS--EEEETTEEEEHHHHHH
T ss_pred CCCCCCCccCcEEEEEeCCcEEEccccccCCCCCccCCCe--eEeECCEEECHHHHhh
Confidence 344555444333332 233456655 99999999997766 8888999999887654
No 160
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=39.75 E-value=2.3e+02 Score=25.81 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHh-cCChHHHHHHHHhhhhhhhhccchHHHHhH
Q 014891 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQ-NKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (416)
Q Consensus 144 ~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~-~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr 222 (416)
..+..++++-|.+.|.+..-..|.+-.=|++...+. -.|. -|... +...+.+=++-..|.
T Consensus 29 ~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA---------~~LLs~~~~~----------~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 29 HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLA---------CQLLSLGNQY----------PPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHH---------HHHHHhHccC----------hHHHHHHHHHHHHhh
Confidence 478999999999999999988888776666543222 1111 12211 122222233333433
Q ss_pred -H-HHHHH-HHhcCChHHHHHHHHHh
Q 014891 223 -L-QEFIE-LVRGENNLRAITYARKY 245 (416)
Q Consensus 223 -~-q~fIE-Lir~~~~~eAi~yar~~ 245 (416)
- ...+| |+..|++.+|+.|+|+.
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2 23445 78899999999999974
No 161
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=39.41 E-value=1.7e+02 Score=31.46 Aligned_cols=93 Identities=18% Similarity=0.253 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHcChHHHHHHHHHHhCCC---CcccHHHHHHHH---HHHH-HHhcCChHHHHHHHHhhhhhhhhcc
Q 014891 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQ---DLVDIEVFQEAK---KVID-ALQNKEVAPALAWCSDNKSRLKKSK 214 (416)
Q Consensus 142 ~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~---~~~d~~~f~~~~---~I~~-~L~~gdl~~AL~W~~~n~~~L~k~~ 214 (416)
....||.-.+-|++|.|..+.|...+.-.--+ ...|+..++-++ +.-+ -.+.|++..||..+...........
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~ 339 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFE 339 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999988887644222 122332222222 2222 3458999999999887655544432
Q ss_pred -chHHHHhHHH------HHHHHHhcCC
Q 014891 215 -SKFEFQLRLQ------EFIELVRGEN 234 (416)
Q Consensus 215 -S~LeF~Lr~q------~fIELir~~~ 234 (416)
-.+.|.-++. -||+||+-.+
T Consensus 340 ~DQfDFH~Yc~RK~t~r~Y~~~L~~ed 366 (517)
T PF12569_consen 340 EDQFDFHSYCLRKMTLRAYVDMLRWED 366 (517)
T ss_pred cccccHHHHHHhhccHHHHHHHHHHHH
Confidence 4566766554 4888888654
No 162
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.81 E-value=11 Score=37.10 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=33.0
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
|.|-|.++..-. ||+..|||-+++.+-.+-.++ .-+|+.|++...
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk---~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQK---GEKCYVCSQQTH 286 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhcccccc---CCcceecccccc
Confidence 367777777766 999999999999876443332 258999987653
No 163
>PRK11827 hypothetical protein; Provisional
Probab=38.46 E-value=27 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=11.0
Q ss_pred Ceeeeccccccc-CCCCCceecc
Q 014891 354 SKLVCYITKELM-DTENPPQVLP 375 (416)
Q Consensus 354 S~~~Cpis~~~~-~~~NpP~~lp 375 (416)
..|+|...+-.. -.++-|+||+
T Consensus 25 ~~Lic~~~~laYPI~dgIPVlL~ 47 (60)
T PRK11827 25 QELICKLDNLAFPLRDGIPVLLE 47 (60)
T ss_pred CeEECCccCeeccccCCccccCH
Confidence 355555555544 2445555554
No 164
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=38.41 E-value=22 Score=32.70 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=20.9
Q ss_pred ceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCcee
Q 014891 371 PQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVK 412 (416)
Q Consensus 371 P~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~k 412 (416)
-++-||||+. -++.+-.. -.|+||.||......|..+
T Consensus 113 ~y~C~~~~~r--~sfdeA~~---~~F~Cp~Cg~~L~~~d~s~ 149 (176)
T COG1675 113 YYVCPNCHVK--YSFDEAME---LGFTCPKCGEDLEEYDSSE 149 (176)
T ss_pred ceeCCCCCCc--ccHHHHHH---hCCCCCCCCchhhhccchH
Confidence 3444677764 22332221 1389999998876665433
No 165
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=38.36 E-value=16 Score=24.46 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=12.4
Q ss_pred ceecCCCCcccCcCCc
Q 014891 395 KITCPRTGLVCNYSDL 410 (416)
Q Consensus 395 ~~~CP~~~~~~~~~~~ 410 (416)
++.||.|+..|..+|-
T Consensus 2 ~i~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDE 17 (36)
T ss_pred EEECCCCCCEEeCCHH
Confidence 4788888888887764
No 166
>PRK10780 periplasmic chaperone; Provisional
Probab=37.44 E-value=3e+02 Score=24.54 Aligned_cols=71 Identities=6% Similarity=0.084 Sum_probs=45.6
Q ss_pred hhhcccccccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhc-CCCChhHHHHHHHHHHHHHHHHHHHHH
Q 014891 40 ALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-ENFSKDDAVNHLTSLVSRLQGLKRKLE 110 (416)
Q Consensus 40 ~~~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~-~~~~~~~~~~~l~~li~kl~~lkrkl~ 110 (416)
.+..++|..+-=-..|.+.|...|+.+++....+.....++.+. ...+.++....-..+..+.+.++++..
T Consensus 33 ~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~ 104 (165)
T PRK10780 33 SIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQ 104 (165)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566776666667788888888888887777777777777663 235555554444555555555555554
No 167
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.40 E-value=17 Score=31.08 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=15.7
Q ss_pred CCceecCCCCcccCcCCc
Q 014891 393 NGKITCPRTGLVCNYSDL 410 (416)
Q Consensus 393 ~~~~~CP~~~~~~~~~~~ 410 (416)
.|..+||.||.+|..++-
T Consensus 96 EG~l~CpetG~vfpI~~G 113 (124)
T KOG1088|consen 96 EGELVCPETGRVFPISDG 113 (124)
T ss_pred cceEecCCCCcEeecccC
Confidence 689999999999998764
No 168
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=37.02 E-value=18 Score=31.37 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=9.0
Q ss_pred ceecCCCCcccCcC
Q 014891 395 KITCPRTGLVCNYS 408 (416)
Q Consensus 395 ~~~CP~~~~~~~~~ 408 (416)
-++||+||.+|..+
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 45677777666555
No 169
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=36.36 E-value=3.4e+02 Score=26.49 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHcChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHH
Q 014891 146 VKRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (416)
Q Consensus 146 lnrlI~dyLlR~Gy~etA~~l~~es-gi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q 224 (416)
...+++.-+...|.++.|....++. .+. .-+......+..|. ...|+++.|++|+...-..... ...+....+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~--~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~ 191 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL--EMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWH 191 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH--HHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHH
Confidence 3446677788999888877776554 222 22323333333333 3589999999999876443221 23333333333
Q ss_pred HHHHHHhcCChHHHHHHHHHhc
Q 014891 225 EFIELVRGENNLRAITYARKYL 246 (416)
Q Consensus 225 ~fIELir~~~~~eAi~yar~~l 246 (416)
--.-++..|+..+|+.+.++.+
T Consensus 192 la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 192 LALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 3334667899999999998865
No 170
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=35.91 E-value=49 Score=21.81 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.8
Q ss_pred HHHHHHh--cCChHHHHHHH
Q 014891 186 KVIDALQ--NKEVAPALAWC 203 (416)
Q Consensus 186 ~I~~~L~--~gdl~~AL~W~ 203 (416)
..+++|+ +||++.|++|+
T Consensus 18 ~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHhC
Confidence 5777886 68999999996
No 171
>PF14282 FlxA: FlxA-like protein
Probab=35.57 E-value=2.5e+02 Score=23.34 Aligned_cols=52 Identities=12% Similarity=0.311 Sum_probs=38.8
Q ss_pred HHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 014891 64 RAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRT 115 (416)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~ 115 (416)
+.|.+.+..|...+.+|....+.+.++...++..|-..+..|...+.....+
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777888876556777888888888888888888888665543
No 172
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=35.08 E-value=18 Score=27.83 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=18.8
Q ss_pred cCCccccHHHHHHHHHh--CC------CceecCCCCcccCcC
Q 014891 375 PNGYVYSTKALEEMAKK--NN------GKITCPRTGLVCNYS 408 (416)
Q Consensus 375 p~G~V~s~~al~~l~~~--~~------~~~~CP~~~~~~~~~ 408 (416)
.||++|-...|.+|... ++ ..-+||+|.+...++
T Consensus 27 ~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 27 SCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp T----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred ccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 69999999999998763 11 134799999987654
No 173
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.96 E-value=3.4e+02 Score=24.35 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=21.8
Q ss_pred cHHHHHHHHHhhhHHHHHhHHHHHHHHHHh
Q 014891 51 PFEHYKKTIRTNHRAVEKEITSVISNVADV 80 (416)
Q Consensus 51 P~E~l~k~fr~~qk~ieke~~~v~~~~~~l 80 (416)
||-+++-+++.. -.||||+..+.....++
T Consensus 3 p~~l~~dri~Al-~~iEkeI~~~mq~Ag~i 31 (180)
T KOG4057|consen 3 PNPLLTDRIQAL-VTIEKEIDEMMQCAGEI 31 (180)
T ss_pred CcchhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 666777777765 78999999887766554
No 174
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=34.58 E-value=21 Score=25.07 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=15.4
Q ss_pred cCCccccHHHHHHHHHhCCCceecCCCCccc
Q 014891 375 PNGYVYSTKALEEMAKKNNGKITCPRTGLVC 405 (416)
Q Consensus 375 p~G~V~s~~al~~l~~~~~~~~~CP~~~~~~ 405 (416)
.||+.+..+ ..+.++||+||-..
T Consensus 7 ~Cg~~~~~~--------~~~~irC~~CG~rI 29 (44)
T smart00659 7 ECGRENEIK--------SKDVVRCRECGYRI 29 (44)
T ss_pred CCCCEeecC--------CCCceECCCCCceE
Confidence 466655432 35679999998654
No 175
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.15 E-value=16 Score=30.75 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=13.3
Q ss_pred CCCceecCCCCcccCcC
Q 014891 392 NNGKITCPRTGLVCNYS 408 (416)
Q Consensus 392 ~~~~~~CP~~~~~~~~~ 408 (416)
|..-++|||||+.|+.+
T Consensus 23 NrdPiVsPytG~s~P~s 39 (129)
T COG4530 23 NRDPIVSPYTGKSYPRS 39 (129)
T ss_pred CCCccccCcccccchHH
Confidence 34568999999999765
No 176
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.78 E-value=22 Score=33.94 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=20.7
Q ss_pred CCCCCCchhhhc----------ccCCCCCC-------CCCCCeeeecccc
Q 014891 330 KEDPLSQESFRK----------LASPLPYS-------KQHHSKLVCYITK 362 (416)
Q Consensus 330 ~~~P~c~~~~~~----------l~~~LP~~-------~~~hS~~~Cpis~ 362 (416)
-.||||+.-|.. ++.+|.+. ..+-++.+||+.+
T Consensus 20 ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~ 69 (267)
T COG1655 20 IECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICY 69 (267)
T ss_pred eccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhh
Confidence 469999886642 45555553 2345667777754
No 177
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=33.76 E-value=19 Score=26.15 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=12.1
Q ss_pred CceecCCCCcccCcC
Q 014891 394 GKITCPRTGLVCNYS 408 (416)
Q Consensus 394 ~~~~CP~~~~~~~~~ 408 (416)
..+|||+|+....+.
T Consensus 23 leIKCpRC~tiN~~~ 37 (51)
T PF10122_consen 23 LEIKCPRCKTINHVR 37 (51)
T ss_pred EEEECCCCCccceEe
Confidence 479999999877654
No 178
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=33.66 E-value=31 Score=38.65 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=40.7
Q ss_pred eecccccccCCCCCceeccCCcc-----ccHHHHHHHHHhCCCceecCCCCcccCcCCc
Q 014891 357 VCYITKELMDTENPPQVLPNGYV-----YSTKALEEMAKKNNGKITCPRTGLVCNYSDL 410 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~V-----~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~ 410 (416)
+|+|.+.+-.++| |+-=||-+- +-+++|.+|.. .++..||-.|+-+|.+.++
T Consensus 14 ~CRICr~e~~~d~-pLfhPCKC~GSIkYiH~eCL~eW~~-~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 14 SCRICRTEDIRDD-PLFHPCKCSGSIKYIHRECLMEWME-CSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred hceeecCCCCCCC-cCcccccccchhHHHHHHHHHHHHh-cCCCcceeeecceeeeeee
Confidence 6888888888877 566788765 45778888875 5678999999999877654
No 179
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=33.45 E-value=47 Score=39.20 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=29.5
Q ss_pred eeecccccccCCCCCce-eccCCccccHHHHHHHHHhCCCceecCCCCcccCcCCceec
Q 014891 356 LVCYITKELMDTENPPQ-VLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDLVKA 413 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~-~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~~kv 413 (416)
..||-.|..+. |++ +-.||..+.. ...+...||+|+.......-+++
T Consensus 680 ~fCP~CGs~te---~vy~CPsCGaev~~--------des~a~~CP~CGtplv~~~~~~i 727 (1337)
T PRK14714 680 NRCPDCGTHTE---PVYVCPDCGAEVPP--------DESGRVECPRCDVELTPYQRRTI 727 (1337)
T ss_pred ccCcccCCcCC---CceeCccCCCccCC--------CccccccCCCCCCcccccceEEe
Confidence 37888888763 344 3457775432 11225689999988776665554
No 180
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=33.28 E-value=5.1e+02 Score=25.96 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=19.6
Q ss_pred cccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhh
Q 014891 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD 82 (416)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (416)
.-|||.|.+ --..++.+...+...+.++..
T Consensus 6 s~~l~~L~~----Ep~~L~~~~~~l~~ql~~La~ 35 (338)
T PF04124_consen 6 SLSLESLFS----EPQSLSEEIASLDAQLQSLAF 35 (338)
T ss_pred cCCHHHHHh----hHHHHHHHHHHHHHHHHHHHH
Confidence 457777776 345566666777777776655
No 181
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=33.03 E-value=1.8e+02 Score=20.73 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=32.0
Q ss_pred HHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 014891 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDN 206 (416)
Q Consensus 150 I~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n 206 (416)
.+..++..|.++.|....++.=-..+-+.+....+..+.. ..|+++.|++|....
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY--QQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 4567778888887777766542223334444444443333 578888888877644
No 182
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=32.54 E-value=6.8e+02 Score=27.15 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=10.9
Q ss_pred HHHHHHHhc-CChHHHHHHHHHhc
Q 014891 224 QEFIELVRG-ENNLRAITYARKYL 246 (416)
Q Consensus 224 q~fIELir~-~~~~eAi~yar~~l 246 (416)
.+--.+-+. +++.+|+.-+-+-+
T Consensus 520 ~~Ae~~F~~~~~Y~~ALe~i~~al 543 (560)
T PF06160_consen 520 TEAEDLFRNEYDYEKALETIATAL 543 (560)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHH
Confidence 333444444 55555555544433
No 183
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.34 E-value=4e+02 Score=24.48 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=23.6
Q ss_pred hhcc-HHHHHHHHHHHHHHcChHHHHHHHHHHhCCC
Q 014891 139 AEWN-NTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (416)
Q Consensus 139 ~~w~-~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~ 173 (416)
..|. +.++-|-|.+-++ .|+-..-..|-+|.||+
T Consensus 166 ~~wrk~krmf~ei~d~~~-e~~pk~ksel~eelGIE 200 (201)
T KOG4603|consen 166 KEWRKRKRMFREIIDKLL-EGLPKKKSELYEELGIE 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcchHHHHHHHhCcC
Confidence 4675 4677777877766 46666666777788875
No 184
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=32.24 E-value=32 Score=34.31 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=32.5
Q ss_pred CCCCCeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 350 KQHHSKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 350 ~~~hS~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
.-...+|-|||..+.+.. |.+ =+|||..+..+-.++. .+||.|...+.
T Consensus 43 ~~~~~lleCPvC~~~l~~---Pi~QC~nGHlaCssC~~~~~------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSP---PIFQCDNGHLACSSCRTKVS------NKCPTCRLPIG 91 (299)
T ss_pred ccchhhccCchhhccCcc---cceecCCCcEehhhhhhhhc------ccCCccccccc
Confidence 335677778887777765 555 6788888877775552 46777766554
No 185
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=32.23 E-value=20 Score=37.00 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=35.2
Q ss_pred eeeecccccccCCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcC
Q 014891 355 KLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 355 ~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~ 408 (416)
-+.||+-..++-+ |+- ..|||.|+..++.++... ..+||.|...-..+
T Consensus 21 ~l~C~~C~~vl~~---p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRD---PVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccC---CCCCCCCCCcccccccchhhcc---CcCCcccccccchh
Confidence 3567777777765 555 699999999999988643 67999986554433
No 186
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=32.08 E-value=29 Score=24.53 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=23.8
Q ss_pred ecccccccCCCCCceeccCCc-----cccHHHHHHHHHhCCCceecCCC
Q 014891 358 CYITKELMDTENPPQVLPNGY-----VYSTKALEEMAKKNNGKITCPRT 401 (416)
Q Consensus 358 Cpis~~~~~~~NpP~~lp~G~-----V~s~~al~~l~~~~~~~~~CP~~ 401 (416)
|.|-.+.-++++ |+..||+. ..-++.|++|... .+..+|+.|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~-~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRE-SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHH-HT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHh-cCCCcCCCC
Confidence 455555555555 89999875 4456788888764 345678876
No 187
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=32.04 E-value=2.8e+02 Score=22.64 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHhHHHHHHHHHHhhh
Q 014891 56 KKTIRTNHRAVEKEITSVISNVADVSD 82 (416)
Q Consensus 56 ~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (416)
.+-|-.+.+.|+-|+......+.-|.+
T Consensus 2 ~~~f~~~~~~v~~el~~t~~d~~LLe~ 28 (99)
T PF10046_consen 2 ERMFSKVSKYVESELEATNEDYNLLEN 28 (99)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356777888888888888777777765
No 188
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=31.69 E-value=17 Score=26.92 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=12.3
Q ss_pred CCceecCCCCcccCcC
Q 014891 393 NGKITCPRTGLVCNYS 408 (416)
Q Consensus 393 ~~~~~CP~~~~~~~~~ 408 (416)
...++||+|+..|..+
T Consensus 15 E~~lrCPRC~~~FR~~ 30 (65)
T COG4049 15 EEFLRCPRCGMVFRRR 30 (65)
T ss_pred ceeeeCCchhHHHHHh
Confidence 3457999999998643
No 189
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=31.68 E-value=25 Score=34.01 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=3.9
Q ss_pred CCCCCch
Q 014891 331 EDPLSQE 337 (416)
Q Consensus 331 ~~P~c~~ 337 (416)
.||+|..
T Consensus 4 ~CP~C~~ 10 (272)
T PRK11088 4 QCPLCHQ 10 (272)
T ss_pred cCCCCCc
Confidence 3666654
No 190
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=31.66 E-value=34 Score=37.75 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=44.5
Q ss_pred CeeeecccccccCCCCCcee-ccCCccccHHHHHHHHHh-CCCceecCCCCcccCcCCce
Q 014891 354 SKLVCYITKELMDTENPPQV-LPNGYVYSTKALEEMAKK-NNGKITCPRTGLVCNYSDLV 411 (416)
Q Consensus 354 S~~~Cpis~~~~~~~NpP~~-lp~G~V~s~~al~~l~~~-~~~~~~CP~~~~~~~~~~~~ 411 (416)
=.|-||+++..|.- |+. ..|.|+=+.+++.-+..+ ..+.-.||+|.+.+.++++.
T Consensus 305 vSL~CPl~~~Rm~~---P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSL---PARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred eEecCCcccceeec---CCcccccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 35789999999987 565 899999999998877654 34678999999999887754
No 191
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.65 E-value=6.3e+02 Score=26.53 Aligned_cols=102 Identities=11% Similarity=0.284 Sum_probs=49.7
Q ss_pred cccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhh-----cCCC-------C-------hhHHHHHHHHHHHHHHHHHHHH
Q 014891 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD-----SENF-------S-------KDDAVNHLTSLVSRLQGLKRKL 109 (416)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~-----~~~~-------~-------~~~~~~~l~~li~kl~~lkrkl 109 (416)
|-=+-.||-.+...++.+..-+..|...+..++. +++. + .+.++.++|.+-+-|+.|++.+
T Consensus 161 rrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV 240 (426)
T smart00806 161 QRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDV 240 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556666666666666666666655543 1111 1 2444555666555566655555
Q ss_pred Hhhh----HHH----HHHHHHHHHHHHhhhhcCchhhhhccH---HHHHHHH
Q 014891 110 EEGS----RTE----HLQAQKCRARLNHLESADAENLAEWNN---TRVKRIL 150 (416)
Q Consensus 110 ~~~~----~~e----~~~~~~~~~Rl~~L~~~~~~~~~~w~~---~~lnrlI 150 (416)
.+.- ..+ .+-++.+.+.|..+++.=..--+.|.+ ..|+.+.
T Consensus 241 ~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~Vc 292 (426)
T smart00806 241 AQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVC 292 (426)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 3321 111 123445555666665432222344543 4666544
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=31.34 E-value=24 Score=36.84 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=35.1
Q ss_pred eecccccccCCCCCc-eeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 357 VCYITKELMDTENPP-QVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP-~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
.|||.-|.||++-.- +..+|.|.|--.++.+|. --.||.|.-...
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~-----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW-----DSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhcc-----cCcChhhhhhcC
Confidence 799999999876544 448999999999999984 246777765444
No 193
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.22 E-value=1.2e+02 Score=33.74 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=28.6
Q ss_pred ccHHHHHHHHHHHHHHcChHHHHHHHHHHhCCC
Q 014891 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (416)
Q Consensus 141 w~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~ 173 (416)
.....+|+++.+||-+.||..+-..+.+|.++.
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~ 51 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLP 51 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhccc
Confidence 345789999999999999999999999987643
No 194
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=30.60 E-value=3e+02 Score=22.90 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh--cC-chhhhhccHHHHHHHHHHHHHHcChHHHHHHHH
Q 014891 102 LQGLKRKLEEGSRTEHLQAQKCRARLNHLES--AD-AENLAEWNNTRVKRILVDYMLRMSYYETAEKLA 167 (416)
Q Consensus 102 l~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~--~~-~~~~~~w~~~~lnrlI~dyLlR~Gy~etA~~l~ 167 (416)
.+.++|++-.-. ......+.+..|++.+-+ ++ .+....+++..+..+|-.++.|.|++..++...
T Consensus 13 FD~lRk~~l~~~-~~~~~~~~l~~~v~~~v~~~l~~~~~l~~~nk~k~~alI~~~i~rs~~~~~~e~~i 80 (106)
T PF05205_consen 13 FDKLRKECLADF-DTSPAYQNLRQRVEEIVESELERDPWLLSKNKGKARALIEGAIDRSGVYKGVERII 80 (106)
T ss_pred hHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 344555554433 233455556666655542 11 223455668889999999999999987755443
No 195
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=30.24 E-value=60 Score=23.03 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhcccc
Q 014891 222 RLQEFIELVRGENNLRAITYARKYLAPW 249 (416)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~ 249 (416)
...++.+.|..|+..+|++++.++-+..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPL 31 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHH
Confidence 3567889999999999999999876654
No 196
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=30.22 E-value=17 Score=36.21 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=26.7
Q ss_pred ccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 362 KELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 362 ~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
+.+.++..|=|-|.||||-+..-.-.-...+...-+||.|-.+-.
T Consensus 308 ~~~~~~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~gp 352 (429)
T KOG3842|consen 308 KRVVDEKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVVGP 352 (429)
T ss_pred cccccccCCeEEEeccccccccccccccccCcccCcCCeeeeecc
Confidence 344455454455999999887544221111223679999977643
No 197
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=30.19 E-value=5.6e+02 Score=25.51 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHHh
Q 014891 145 RVKRILVDYMLRMSYYETAEKLAESS 170 (416)
Q Consensus 145 ~lnrlI~dyLlR~Gy~etA~~l~~es 170 (416)
.+.+++++.|.+.||.+.|+.+..+.
T Consensus 134 Dgq~~~~qal~~lG~~~~a~aI~~el 159 (301)
T TIGR03362 134 DGQRLSAQALERLGYAAVAQAIRDEL 159 (301)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 68899999999999988888776554
No 198
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=29.93 E-value=33 Score=25.36 Aligned_cols=23 Identities=13% Similarity=0.483 Sum_probs=17.9
Q ss_pred hhcccccccccHHHHHHHHHhhhH
Q 014891 41 LKLEHQFLRVPFEHYKKTIRTNHR 64 (416)
Q Consensus 41 ~~le~~~~~vP~E~l~k~fr~~qk 64 (416)
-.-.+.++ ||||.|+..++.+++
T Consensus 23 Rrs~~~~~-Vpy~~ls~~~q~I~r 45 (56)
T PF01383_consen 23 RRSNQTYV-VPYSQLSQEMQRINR 45 (56)
T ss_dssp HHHEEEEE-EEHHHHHHHHHHHHH
T ss_pred EeeeEEEE-EcHHHhHHHHHHHHH
Confidence 33455566 999999999998876
No 199
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.91 E-value=32 Score=22.64 Aligned_cols=7 Identities=43% Similarity=1.032 Sum_probs=5.2
Q ss_pred ecCCCCc
Q 014891 397 TCPRTGL 403 (416)
Q Consensus 397 ~CP~~~~ 403 (416)
+||.|+.
T Consensus 20 ~CP~Cg~ 26 (34)
T cd00729 20 KCPICGA 26 (34)
T ss_pred cCcCCCC
Confidence 7777775
No 200
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=3.6e+02 Score=28.83 Aligned_cols=11 Identities=27% Similarity=0.676 Sum_probs=7.0
Q ss_pred ccHHHHHHHHH
Q 014891 50 VPFEHYKKTIR 60 (416)
Q Consensus 50 vP~E~l~k~fr 60 (416)
|=||-|+++.+
T Consensus 334 vGF~dL~~R~K 344 (508)
T KOG3091|consen 334 VGFEDLRQRLK 344 (508)
T ss_pred cchHHHHHHHH
Confidence 44677777655
No 201
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=29.81 E-value=4e+02 Score=26.98 Aligned_cols=113 Identities=13% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhcC-chhhhhccHHHHHHHHHHHHHHcChHHHH
Q 014891 85 NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESAD-AENLAEWNNTRVKRILVDYMLRMSYYETA 163 (416)
Q Consensus 85 ~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~~-~~~~~~w~~~~lnrlI~dyLlR~Gy~etA 163 (416)
..++.++++.+...+.++. ........+..+.+.+.+..++.+= .+...+|....+.. +++=+++.|..
T Consensus 9 ~KtP~ElVr~l~e~L~~L~------~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~q-La~Ei~~~dll--- 78 (335)
T PF08569_consen 9 PKTPAELVRSLREALEKLD------SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQ-LAQEIYRSDLL--- 78 (335)
T ss_dssp ---HHHHHHHHHHHHHHHH------SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHH-HHHHHHHHTHH---
T ss_pred CCCHHHHHHHHHHHHHHhc------cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH-HHHHHHHhCHH---
Confidence 4567888888888888884 1111222233444444555555332 33345677666543 34444455433
Q ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHhcCC----hHHHHHHHHhhhhhh
Q 014891 164 EKLAESSNIQDLVDIEVFQEAKKVIDALQNKE----VAPALAWCSDNKSRL 210 (416)
Q Consensus 164 ~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gd----l~~AL~W~~~n~~~L 210 (416)
..|+. .+. ..|.+.=.....|...+..++ ..|+.+|+..|++.+
T Consensus 79 ~~Li~--~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~pei 126 (335)
T PF08569_consen 79 YLLIR--NLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEI 126 (335)
T ss_dssp HHHHH--TGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THH
T ss_pred HHHHH--Hhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHH
Confidence 23332 222 235565566666777776433 337888988886653
No 202
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.49 E-value=7.7e+02 Score=26.85 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhhcCCCChh---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q 014891 69 EITSVISNVADVSDSENFSKD---DAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (416)
Q Consensus 69 e~~~v~~~~~~l~~~~~~~~~---~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~ 131 (416)
++....+.++++.+..-.++. ...+.+|.+-..++..+.++....++=....++++..+..|+
T Consensus 192 ~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 192 DLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445555555555542112222 233344444444444333333333333334445555555555
No 203
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=29.15 E-value=18 Score=40.66 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhcccccc
Q 014891 234 NNLRAITYARKYLAPWGA 251 (416)
Q Consensus 234 ~~~eAi~yar~~l~~~~~ 251 (416)
+..||+.+++++=.|+-.
T Consensus 470 ~~~eA~~~s~~~~vPLHP 487 (900)
T PF03833_consen 470 SAEEALEISEEYGVPLHP 487 (900)
T ss_dssp ------------------
T ss_pred CHHHHHHHHHHhCCCCCC
Confidence 457899998887666543
No 204
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=29.11 E-value=1.4e+02 Score=32.36 Aligned_cols=42 Identities=26% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHH
Q 014891 160 YETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALA 201 (416)
Q Consensus 160 ~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~ 201 (416)
.+.|+-+-+-+-|.+-+--+.-..+.+|.-.=+..++++|+.
T Consensus 451 ~e~a~~iw~l~tip~kv~~e~~la~ek~~~~~k~~el~eaf~ 492 (727)
T PF05642_consen 451 SEVAEGIWKLSTIPDKVVNEFELAIEKIKASPKKPELEEAFK 492 (727)
T ss_pred HHHHhHhHhhhcCcHHHHHHHHHHHHHhhcCCCcHHHHHHHh
Confidence 344555555455544433333333333433334455555554
No 205
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=29.04 E-value=2.1e+02 Score=20.15 Aligned_cols=88 Identities=10% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHHHcChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHH
Q 014891 150 LVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (416)
Q Consensus 150 I~dyLlR~Gy~etA~~l~~es-gi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIE 228 (416)
++..+.+.|.++.|..+.++. .+.+ .+...+..+..+ ....|+++.|++++..-...... .....+ ..-.-
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~----~~~~~ 77 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAA--YYKLGKYEEALEDYEKALELDPD-NAKAYY----NLGLA 77 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCc-chhHHH----HHHHH
Confidence 455566677776666655443 2221 122222222222 22358888888888765332211 111222 22222
Q ss_pred HHhcCChHHHHHHHHHh
Q 014891 229 LVRGENNLRAITYARKY 245 (416)
Q Consensus 229 Lir~~~~~eAi~yar~~ 245 (416)
+...|+..+|+.+..+-
T Consensus 78 ~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 78 YYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 33456677777776653
No 206
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=29.03 E-value=34 Score=35.26 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=14.7
Q ss_pred cCCccccHHHHHHHHH
Q 014891 375 PNGYVYSTKALEEMAK 390 (416)
Q Consensus 375 p~G~V~s~~al~~l~~ 390 (416)
|||.||+++-|++++.
T Consensus 211 PcGnVys~~HL~kiae 226 (447)
T KOG0259|consen 211 PCGNVYSEDHLKKIAE 226 (447)
T ss_pred CCcccccHHHHHHHHH
Confidence 7999999999999875
No 207
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=28.88 E-value=32 Score=34.39 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=25.3
Q ss_pred ccCCccccHHHHHHHHHhC------CCceecCCCCcccC
Q 014891 374 LPNGYVYSTKALEEMAKKN------NGKITCPRTGLVCN 406 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~------~~~~~CP~~~~~~~ 406 (416)
-|||||-|++...=|++-. .=...||.|..-..
T Consensus 376 ~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 376 NPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred CCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4899999999999998631 12468999987653
No 208
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=28.76 E-value=73 Score=20.77 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=15.2
Q ss_pred HHHHHHh--cCChHHHHHHHH
Q 014891 186 KVIDALQ--NKEVAPALAWCS 204 (416)
Q Consensus 186 ~I~~~L~--~gdl~~AL~W~~ 204 (416)
+++.+|. +||++.|++|+-
T Consensus 17 ~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 17 EARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHhCCCHHHHHHHHh
Confidence 5777775 699999999974
No 209
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=28.46 E-value=26 Score=24.45 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.1
Q ss_pred ceecCCCCcccCcC
Q 014891 395 KITCPRTGLVCNYS 408 (416)
Q Consensus 395 ~~~CP~~~~~~~~~ 408 (416)
.++||+||..+...
T Consensus 21 ~~~Cp~CG~~~~~~ 34 (46)
T PRK00398 21 GVRCPYCGYRILFK 34 (46)
T ss_pred ceECCCCCCeEEEc
Confidence 68999999877543
No 210
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.31 E-value=5.8e+02 Score=25.06 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHhhhhcCchhhhhccH--HHHHHHHHHHHHHcCh
Q 014891 92 VNHLTSLVSRLQGLKRKLEEGSRTEH----------LQAQKCRARLNHLESADAENLAEWNN--TRVKRILVDYMLRMSY 159 (416)
Q Consensus 92 ~~~l~~li~kl~~lkrkl~~~~~~e~----------~~~~~~~~Rl~~L~~~~~~~~~~w~~--~~lnrlI~dyLlR~Gy 159 (416)
...+..+...++.+++.+.....+|. .-+++.++|++-|+++-+...+++.+ ..|..+=..|+.+...
T Consensus 168 ~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRN 247 (267)
T PF10234_consen 168 KEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRN 247 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666677777777777666664 34777788888888887766666653 6788888888888765
Q ss_pred HHH
Q 014891 160 YET 162 (416)
Q Consensus 160 ~et 162 (416)
.+-
T Consensus 248 l~y 250 (267)
T PF10234_consen 248 LDY 250 (267)
T ss_pred HHH
Confidence 443
No 211
>PRK11186 carboxy-terminal protease; Provisional
Probab=28.04 E-value=8.8e+02 Score=27.07 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.4
Q ss_pred ccHHHHHH-HHHHHHHHhcCChHHHHHHHHhhhhhh
Q 014891 176 VDIEVFQE-AKKVIDALQNKEVAPALAWCSDNKSRL 210 (416)
Q Consensus 176 ~d~~~f~~-~~~I~~~L~~gdl~~AL~W~~~n~~~L 210 (416)
.|++.|.. ..++-+.|++||+++|.+..+-...++
T Consensus 86 sDi~~f~~~~~~ldd~~~~g~l~~~~~i~~~~~~r~ 121 (667)
T PRK11186 86 SDIDQFAKYKTQLDDELKSGKLDVAYDLYNLAQKRR 121 (667)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 37777766 556778899999999999887654433
No 212
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=27.38 E-value=29 Score=26.15 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=10.0
Q ss_pred CCceecCCCCcccCcC
Q 014891 393 NGKITCPRTGLVCNYS 408 (416)
Q Consensus 393 ~~~~~CP~~~~~~~~~ 408 (416)
+..++||.||..++.+
T Consensus 44 ~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 44 GRVFTCPNCGFEMDRD 59 (69)
T ss_pred cceEEcCCCCCEECcH
Confidence 4457777777765543
No 213
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=27.17 E-value=8e+02 Score=29.30 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH----hcCChHHHHHHHHhhhh
Q 014891 145 RVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDAL----QNKEVAPALAWCSDNKS 208 (416)
Q Consensus 145 ~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L----~~gdl~~AL~W~~~n~~ 208 (416)
.+-.+=++||.+++.++-|..+-+..| ++.++| ..|||..|+.-......
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~G--------------klekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCG--------------KLEKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhc--------------cHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 344455677777776665555544433 344444 47899998887765433
No 214
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.16 E-value=2.1e+02 Score=23.53 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=25.9
Q ss_pred hhcccccccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhh
Q 014891 41 LKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVS 81 (416)
Q Consensus 41 ~~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~ 81 (416)
..+...|++.|.+.+......-...++.++..+...+..+.
T Consensus 50 ~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 50 KLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred HHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777777777776666666666666655444443
No 215
>PRK14127 cell division protein GpsB; Provisional
Probab=27.16 E-value=2.2e+02 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.444 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhh
Q 014891 85 NFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (416)
Q Consensus 85 ~~~~~~~~~~l~~li~kl~~lkrkl~~~ 112 (416)
+.+++++..-||.+++-++.+.++..+.
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~L 49 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEEL 49 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888887777776665443
No 216
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=27.10 E-value=4.7e+02 Score=26.18 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=51.3
Q ss_pred cccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhh---cCCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 014891 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD---SENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTE 116 (416)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~---~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e 116 (416)
+||=+.. +..+..|+.+|.-+..|..++.-++- .|+.+-+.++...+.|-.-++.+-+++++....|
T Consensus 38 ~ip~~~~-~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~ 107 (302)
T PF05508_consen 38 KIPDKDR-KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAEKE 107 (302)
T ss_pred hCCHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777766 88999999999999988877765433 4677777788888888888888888887766533
No 217
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=27.06 E-value=36 Score=20.84 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=8.8
Q ss_pred CCceecCCCCc
Q 014891 393 NGKITCPRTGL 403 (416)
Q Consensus 393 ~~~~~CP~~~~ 403 (416)
...++||.||+
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 45799999985
No 218
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=26.97 E-value=1.1e+02 Score=25.48 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhccccccc--cHHHHHHHHH
Q 014891 221 LRLQEFIELVRGENNLRAITYARKYLAPWGAT--HMKELQRVMA 262 (416)
Q Consensus 221 Lr~q~fIELir~~~~~eAi~yar~~l~~~~~~--~~~ei~~lm~ 262 (416)
=+-...+|||+.++-.-|+.||++.+..+... ..+|++.++.
T Consensus 50 PYErr~mELLkv~kdKrAlKfaKkRlGth~RaK~Kreel~~vl~ 93 (98)
T PTZ00196 50 PYERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEIQEALR 93 (98)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999776532 3455555543
No 219
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.51 E-value=35 Score=25.64 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=5.9
Q ss_pred CceeccCCccc
Q 014891 370 PPQVLPNGYVY 380 (416)
Q Consensus 370 pP~~lp~G~V~ 380 (416)
||+-..||.++
T Consensus 9 ~~~CtSCg~~i 19 (61)
T COG2888 9 PPVCTSCGREI 19 (61)
T ss_pred CceeccCCCEe
Confidence 45555555554
No 220
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=26.21 E-value=9.3e+02 Score=26.74 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=27.1
Q ss_pred hhhHHHHHhHHHHHHHHH-HhhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 014891 61 TNHRAVEKEITSVISNVA-DVSDSENFSKDDAVNHLTSLVSRLQGLKRKLE 110 (416)
Q Consensus 61 ~~qk~ieke~~~v~~~~~-~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~ 110 (416)
...+.+.+|+..+-.+.. .+..+ +...+.+...||..+..++.+...+.
T Consensus 5 ~~~~~L~~eL~~le~~ni~~l~~s-~~~v~~l~~~ld~a~~e~d~le~~l~ 54 (701)
T PF09763_consen 5 AFEERLSKELSALEAANIHSLLES-EKQVNSLMEYLDEALAECDELESWLS 54 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666655543322 22222 23345667777777777777666663
No 221
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=25.83 E-value=1.6e+02 Score=21.22 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHh
Q 014891 118 LQAQKCRARLNH 129 (416)
Q Consensus 118 ~~~~~~~~Rl~~ 129 (416)
++++.|..+|+.
T Consensus 34 ~l~~~c~~~L~~ 45 (53)
T PF02609_consen 34 ELIKKCQERLEE 45 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455556555554
No 222
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=25.53 E-value=4.5e+02 Score=22.87 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.3
Q ss_pred HHHhhh
Q 014891 126 RLNHLE 131 (416)
Q Consensus 126 Rl~~L~ 131 (416)
-++.|+
T Consensus 109 ~ie~LN 114 (131)
T PF10158_consen 109 SIETLN 114 (131)
T ss_pred HHHHHH
Confidence 334443
No 223
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=25.53 E-value=4.8e+02 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHcChHHHHHHH
Q 014891 143 NTRVKRILVDYMLRMSYYETAEKL 166 (416)
Q Consensus 143 ~~~lnrlI~dyLlR~Gy~etA~~l 166 (416)
...+.++|..||+.+|-.+.++.+
T Consensus 164 ~~~~~~~vl~~l~~n~~~~v~E~~ 187 (217)
T COG1777 164 GDMTERIVLEYLLKNGAADVEETS 187 (217)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHH
Confidence 357889999999999955544444
No 224
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=25.38 E-value=5.7e+02 Score=24.02 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=12.0
Q ss_pred HhhhHHHHHhHHHHHHHHHHhhh
Q 014891 60 RTNHRAVEKEITSVISNVADVSD 82 (416)
Q Consensus 60 r~~qk~ieke~~~v~~~~~~l~~ 82 (416)
|..+-.+++-.....+.+..+.+
T Consensus 103 K~~~~~~~k~~k~~~~~~~~l~K 125 (236)
T cd07651 103 KKIQSHMEKLLKKKQDQEKYLEK 125 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446655555555555554
No 225
>PHA03395 p10 fibrous body protein; Provisional
Probab=25.27 E-value=3.7e+02 Score=21.81 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 014891 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (416)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~ 111 (416)
-+|..-|.++--++.+...+.++..+ -.+..++-.+||..-.+|..+..++..
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~n-lpdv~~l~~kLdaq~~~Ltti~tkv~~ 60 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRAN-LPDVTEINEKLDAQSASLDTISSAVDN 60 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc-CCcHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46788889999999999999998763 234455666677777777666666543
No 226
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.27 E-value=6.4e+02 Score=29.52 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCCchhhhhcccccccccHHHHHHHHHhhhHHHH
Q 014891 13 AASPPQNPTPA-AAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVE 67 (416)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~le~~~~~vP~E~l~k~fr~~qk~ie 67 (416)
+.|+|+.+.-- .-||.+||+.+...+-...|+ |+-.+.+.+|..|+.++
T Consensus 645 ~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~------~l~~~~~~~~~~q~el~ 694 (1174)
T KOG0933|consen 645 TRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQ------KLKQAQKELRAIQKELE 694 (1174)
T ss_pred cceeeecCceeCCCCcccCCCCCCcccHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 45666665444 457777888877666222222 45567777777766543
No 227
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.16 E-value=7.5e+02 Score=25.30 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHH---HHhhhhcCchhhhhccHHHHHHH--HHHHHHHc
Q 014891 88 KDDAVNHLTSLVSRLQGLKRKLEEGSRT-----EHLQAQKCRAR---LNHLESADAENLAEWNNTRVKRI--LVDYMLRM 157 (416)
Q Consensus 88 ~~~~~~~l~~li~kl~~lkrkl~~~~~~-----e~~~~~~~~~R---l~~L~~~~~~~~~~w~~~~lnrl--I~dyLlR~ 157 (416)
++...++-..++..+..|+.+.+-...- -.+.++.-+.| ++||++- -.+...+++-+ .+.|.+.+
T Consensus 68 p~a~~ekr~~Vla~lkeLe~ev~piv~~le~Pd~~~~~~~~k~~~~~l~~L~e~-----ynf~~e~i~~lykyakfqyeC 142 (432)
T KOG2758|consen 68 PNALVEKRTEVLAELKELEEEVAPIVKVLENPDLIAALRSDKDRVQNLQHLQEH-----YNFTPERIETLYKYAKFQYEC 142 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHhc
Confidence 5667888889999999999888765422 22344444554 5666631 12223333322 46788888
Q ss_pred ChHHHHHH-HHHHhCCCCcccH-HHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014891 158 SYYETAEK-LAESSNIQDLVDI-EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKS 213 (416)
Q Consensus 158 Gy~etA~~-l~~esgi~~~~d~-~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~ 213 (416)
|.+.-|.. |--=..+....|. ..=.-..+.-..|.-.||+.|++=+...+..+...
T Consensus 143 GNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~ 200 (432)
T KOG2758|consen 143 GNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSK 200 (432)
T ss_pred cCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 86654443 3222222222233 22234556777888888998888887777666553
No 228
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=25.11 E-value=91 Score=31.27 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=18.1
Q ss_pred CCCCCCCCchhhhcc-c-CCCCCCCCCCCeeeecccccccC
Q 014891 328 CTKEDPLSQESFRKL-A-SPLPYSKQHHSKLVCYITKELMD 366 (416)
Q Consensus 328 ~~~~~P~c~~~~~~l-~-~~LP~~~~~hS~~~Cpis~~~~~ 366 (416)
..+.||+|-.. |. + +.+. ...-+=.+.|+..+.+..
T Consensus 186 ~~~~CPvCGs~--P~~s~v~~~-~~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 186 QRQFCPVCGSM--PVSSVVQIG-TTQGLRYLHCNLCESEWH 223 (309)
T ss_pred CCCCCCCCCCc--chhheeecc-CCCCceEEEcCCCCCccc
Confidence 46789999543 11 1 1111 122334566666666554
No 229
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=25.06 E-value=1.9e+02 Score=23.59 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=20.6
Q ss_pred hhhcCcccHHHHHHHHHHHHHHHhC
Q 014891 276 KALFEPKQWDFLVDQFKQEFCKLYG 300 (416)
Q Consensus 276 ~~L~~~~rw~~L~~~F~~~~~~l~g 300 (416)
-.+|+.+....+.+-|...|++.|.
T Consensus 61 ~~iFs~~~~~~i~~y~~~t~frHyk 85 (101)
T PF14769_consen 61 IGIFSVDQVKAIIDYFHNTYFRHYK 85 (101)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999888877664
No 230
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.97 E-value=3.5e+02 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHhh
Q 014891 76 NVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE------GSRTEHLQAQKCRARLNHL 130 (416)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~------~~~~e~~~~~~~~~Rl~~L 130 (416)
.+..+.+.++.+..++....+.+=.|++..|.-+.+ ++.+....+..++.|+...
T Consensus 11 ~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k 71 (83)
T PF07544_consen 11 ILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKK 71 (83)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 344444434566667777777777777777766654 3344445555555555443
No 231
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=24.82 E-value=44 Score=24.55 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=24.0
Q ss_pred CCceeccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 369 NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 369 NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
+..+.|-|++-++...+---.....-+++||+|+.
T Consensus 18 ~~r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 18 SNRYALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred cCceeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 45677888888887777531112345799999985
No 232
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=24.67 E-value=4.9e+02 Score=23.54 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=28.7
Q ss_pred HHHhhhHHHHHhHHHHHHHHHHhhhc-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 014891 58 TIRTNHRAVEKEITSVISNVADVSDS-ENFSKDDAVNHLTSLVSRLQGLKRKL 109 (416)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~-~~~~~~~~~~~l~~li~kl~~lkrkl 109 (416)
.+|..+|..++|...+ ..+.++++. +..+.+|--.+=..+=.|++.+-+++
T Consensus 35 ~s~~~nkdakk~~q~~-~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~el 86 (175)
T KOG4253|consen 35 MSRVGNKDAKKESQKV-AEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKEL 86 (175)
T ss_pred hhcccchhHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999988776 456666652 22333333333334444444444455
No 233
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=24.45 E-value=67 Score=26.79 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=26.9
Q ss_pred CeeeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcc
Q 014891 354 SKLVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLV 404 (416)
Q Consensus 354 S~~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~ 404 (416)
-+|+||.|||++.+.. +-++++.-=+.....|-.||+.
T Consensus 2 eVf~i~~T~EiF~dYe-------------~Y~~R~~~y~~~vwtC~~TGk~ 39 (102)
T PF10537_consen 2 EVFYIPFTGEIFRDYE-------------EYLKRMILYNQRVWTCEITGKS 39 (102)
T ss_pred ceEEeCCCCcccCCHH-------------HHHHHHHHHhCCeeEEecCCCC
Confidence 4789999999997733 4555554445567888888874
No 234
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=24.21 E-value=58 Score=22.73 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=7.7
Q ss_pred eecCCCCcc
Q 014891 396 ITCPRTGLV 404 (416)
Q Consensus 396 ~~CP~~~~~ 404 (416)
++||.|+..
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 789999964
No 235
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=24.21 E-value=32 Score=25.27 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=8.5
Q ss_pred ceecCCCCcc
Q 014891 395 KITCPRTGLV 404 (416)
Q Consensus 395 ~~~CP~~~~~ 404 (416)
.+|||+|++.
T Consensus 24 e~KCPrCK~v 33 (60)
T COG4416 24 EKKCPRCKEV 33 (60)
T ss_pred eecCCcccee
Confidence 6899999875
No 236
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=24.06 E-value=38 Score=32.51 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=28.3
Q ss_pred eecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCC--CCcccCcC
Q 014891 357 VCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPR--TGLVCNYS 408 (416)
Q Consensus 357 ~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~--~~~~~~~~ 408 (416)
.|||+-...- -|-+.-.|.|+|.+++|.++.. ....-.||+ |.+.-.++
T Consensus 191 rCpitl~p~~--~pils~kcnh~~e~D~I~~~lq-~~~trvcp~~~Csq~~~~~ 241 (275)
T COG5627 191 RCPITLNPDF--YPILSSKCNHKPEMDLINKKLQ-VECTRVCPRLICSQKEVVD 241 (275)
T ss_pred cCCcccCcch--hHHHHhhhcccccHHHHHHHhc-CCceeecchhhcchheecc
Confidence 4555544322 1222357889999988888753 344567776 54444433
No 237
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=23.93 E-value=33 Score=25.54 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=8.0
Q ss_pred ceecCCCCcccCcC
Q 014891 395 KITCPRTGLVCNYS 408 (416)
Q Consensus 395 ~~~CP~~~~~~~~~ 408 (416)
+++||.|++.+...
T Consensus 2 ~v~CP~C~k~~~~~ 15 (57)
T PF03884_consen 2 TVKCPICGKPVEWS 15 (57)
T ss_dssp EEE-TTT--EEE-S
T ss_pred cccCCCCCCeeccc
Confidence 57999999988763
No 238
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=23.71 E-value=82 Score=31.13 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHcChHHHHHHHHHHhC
Q 014891 142 NNTRVKRILVDYMLRMSYYETAEKLAESSN 171 (416)
Q Consensus 142 ~~~~lnrlI~dyLlR~Gy~etA~~l~~esg 171 (416)
.|++|.-.|-+||++-|-..+|+.|..|..
T Consensus 16 ArekLa~YvYEYLlhvgaqksaqtflseir 45 (354)
T KOG4594|consen 16 AREKLALYVYEYLLHVGAQKSAQTFLSEIR 45 (354)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 467899999999999999999999987754
No 239
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=23.64 E-value=5.4e+02 Score=25.96 Aligned_cols=90 Identities=13% Similarity=0.038 Sum_probs=52.6
Q ss_pred HHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHH
Q 014891 151 VDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELV 230 (416)
Q Consensus 151 ~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELi 230 (416)
+.-+++.|.++.|..+.++.=-.+..+...+..+.. -.+..|+++.|+..+...-. +..... ..+....+-+.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~--~~~~~g~~~eAl~~~~~Al~-l~P~~~----~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQ--ANIKLGNFTEAVADANKAIE-LDPSLA----KAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHH-hCcCCH----HHHHHHHHHHH
Confidence 566777787777776655441112234444433333 34557999999998866522 222222 22333345556
Q ss_pred hcCChHHHHHHHHHhcc
Q 014891 231 RGENNLRAITYARKYLA 247 (416)
Q Consensus 231 r~~~~~eAi~yar~~l~ 247 (416)
..|++.+|+.+.++-+.
T Consensus 82 ~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 82 KLEEYQTAKAALEKGAS 98 (356)
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 67999999999886553
No 240
>smart00150 SPEC Spectrin repeats.
Probab=23.52 E-value=3.4e+02 Score=20.67 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=19.8
Q ss_pred HHHHHHHhhhHHHHH---hHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 014891 54 HYKKTIRTNHRAVEK---EITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQ 103 (416)
Q Consensus 54 ~l~k~fr~~qk~iek---e~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~ 103 (416)
.+.+.++..++.|+. .+..|......+...+......+...++.|-.+-+
T Consensus 35 ~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~ 87 (101)
T smart00150 35 ALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWE 87 (101)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 344455555554433 33333333333333333333333334333333333
No 241
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.51 E-value=3.2e+02 Score=27.56 Aligned_cols=68 Identities=18% Similarity=0.362 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHhhhhcC---chhhhhcc------HHHHHHHHHHHHHHcC
Q 014891 91 AVNHLTSLVSRLQGLKRKLEEGSRTEHL---QAQKCRARLNHLESAD---AENLAEWN------NTRVKRILVDYMLRMS 158 (416)
Q Consensus 91 ~~~~l~~li~kl~~lkrkl~~~~~~e~~---~~~~~~~Rl~~L~~~~---~~~~~~w~------~~~lnrlI~dyLlR~G 158 (416)
....|..+-++|..|+++.++...+-.+ -+..+..|+++-..+- .+-...|. ...+..+++|.|+-.+
T Consensus 240 ~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa 319 (344)
T PF12777_consen 240 KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAA 319 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3455666666677777776665543332 3455666666554322 33345575 4677888888887654
No 242
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=23.42 E-value=1.4e+02 Score=24.77 Aligned_cols=44 Identities=27% Similarity=0.371 Sum_probs=32.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHhcccccc--ccHHHHHHHHH
Q 014891 219 FQLRLQEFIELVRGENNLRAITYARKYLAPWGA--THMKELQRVMA 262 (416)
Q Consensus 219 F~Lr~q~fIELir~~~~~eAi~yar~~l~~~~~--~~~~ei~~lm~ 262 (416)
|-=+-..-+|||+.++-.-|+.|+++.+..+.. ...+|++.++.
T Consensus 48 faPYEkr~mELlkv~kdKrAlKf~KKRlGth~RAKrKrEel~~vl~ 93 (98)
T PF01158_consen 48 FAPYEKRAMELLKVSKDKRALKFAKKRLGTHIRAKRKREELSNVLA 93 (98)
T ss_dssp HCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344556789999999999999999999887653 23455555543
No 243
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=23.38 E-value=39 Score=35.18 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=0.0
Q ss_pred eeecccccccCCCCCceeccCCccccHHH
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKA 384 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~a 384 (416)
+-|||.+.-..+ |+.|||||-.++.+
T Consensus 5 lkc~vc~~f~~e---piil~c~h~lc~~c 30 (699)
T KOG4367|consen 5 LKCPVCGSFYRE---PIILPCSHNLCQAC 30 (699)
T ss_pred ccCceehhhccC---ceEeecccHHHHHH
No 244
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=23.28 E-value=1e+02 Score=19.91 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.2
Q ss_pred HHHHHHh--cCChHHHHHHH
Q 014891 186 KVIDALQ--NKEVAPALAWC 203 (416)
Q Consensus 186 ~I~~~L~--~gdl~~AL~W~ 203 (416)
.++.+|. +||++.|++|+
T Consensus 17 ~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 17 EALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 4667775 68999999996
No 245
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.25 E-value=29 Score=21.48 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=9.4
Q ss_pred eecCCCCcccCcC
Q 014891 396 ITCPRTGLVCNYS 408 (416)
Q Consensus 396 ~~CP~~~~~~~~~ 408 (416)
+.||.|.+.+...
T Consensus 2 v~CPiC~~~v~~~ 14 (26)
T smart00734 2 VQCPVCFREVPEN 14 (26)
T ss_pred CcCCCCcCcccHH
Confidence 5789888877443
No 246
>PLN02372 violaxanthin de-epoxidase
Probab=23.21 E-value=7e+02 Score=26.18 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHH--HHHHHHHHHHHHHh----hhHHHHHHHHHHHH
Q 014891 52 FEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTS--LVSRLQGLKRKLEE----GSRTEHLQAQKCRA 125 (416)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~--li~kl~~lkrkl~~----~~~~e~~~~~~~~~ 125 (416)
.|.|-|.--...|.|.||+..+...+.+-... . .....+.++. +.+.+.+|+..... ..++|.++++.++.
T Consensus 363 ~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~ 439 (455)
T PLN02372 363 LERLEKDVEEGEKTIVKEARQIEEELEKEVEK--L-GKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKM 439 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 68888888889999999966665555431110 0 0112223333 66666666666543 33555566666555
Q ss_pred HHHh
Q 014891 126 RLNH 129 (416)
Q Consensus 126 Rl~~ 129 (416)
++..
T Consensus 440 ~~~~ 443 (455)
T PLN02372 440 EASE 443 (455)
T ss_pred HHHH
Confidence 5443
No 247
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.17 E-value=5.9e+02 Score=23.34 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 014891 95 LTSLVSRLQGLKRKL 109 (416)
Q Consensus 95 l~~li~kl~~lkrkl 109 (416)
|+.+..+...||.|.
T Consensus 139 le~~~~~~k~LrnKa 153 (171)
T PF04799_consen 139 LEEIQSKSKTLRNKA 153 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444444
No 248
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=23.17 E-value=75 Score=27.89 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=38.9
Q ss_pred CeeeecccccccCCCCCceecc---CCccccHHHHHHHHHhCCCceecCCCCcccCcCCc
Q 014891 354 SKLVCYITKELMDTENPPQVLP---NGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSDL 410 (416)
Q Consensus 354 S~~~Cpis~~~~~~~NpP~~lp---~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~~ 410 (416)
.+.-|-|-+|...|+. +.=| ||.-++-.+--.|=+-.+-..+||.|+..|+.+..
T Consensus 79 ~lYeCnIC~etS~ee~--FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEER--FLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchhh--cCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 4456777777776542 3333 89888888776665555667899999999987654
No 249
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=23.14 E-value=97 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHhc
Q 014891 220 QLRLQEFIELVRGENNLRAITYARKYL 246 (416)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yar~~l 246 (416)
.+...+||.+|+.|++.+|++..++..
T Consensus 39 ~~dip~~i~~i~~g~~~~A~~~i~~~n 65 (111)
T PF14691_consen 39 HIDIPEYIRLIREGNFKEAYELIREDN 65 (111)
T ss_dssp ---HHHHHHHHHCT-HHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 455799999999999999999999653
No 250
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=22.77 E-value=42 Score=27.82 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=12.0
Q ss_pred CceecCCCCcccCc
Q 014891 394 GKITCPRTGLVCNY 407 (416)
Q Consensus 394 ~~~~CP~~~~~~~~ 407 (416)
|...||.|++++..
T Consensus 46 G~~~cP~Cge~~~~ 59 (102)
T PF04475_consen 46 GDTICPKCGEELDS 59 (102)
T ss_pred CcccCCCCCCccCc
Confidence 67899999999864
No 251
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.60 E-value=52 Score=21.84 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=15.6
Q ss_pred ccCCccccHHHHHHHHHhCCCceecCCCCc
Q 014891 374 LPNGYVYSTKALEEMAKKNNGKITCPRTGL 403 (416)
Q Consensus 374 lp~G~V~s~~al~~l~~~~~~~~~CP~~~~ 403 (416)
..||++|.... .+. .+....||.||.
T Consensus 9 ~~Cg~~fe~~~--~~~--~~~~~~CP~Cg~ 34 (41)
T smart00834 9 EDCGHTFEVLQ--KIS--DDPLATCPECGG 34 (41)
T ss_pred CCCCCEEEEEE--ecC--CCCCCCCCCCCC
Confidence 35777664321 111 145789999998
No 252
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=22.57 E-value=16 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCceeccCCccccHHHHHHHHHhCCCceecCCCCccc
Q 014891 369 NPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVC 405 (416)
Q Consensus 369 NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~ 405 (416)
-||..=.||.++-.+.++.- -.||.|+.+.
T Consensus 57 ~Pa~CkkCGfef~~~~ik~p-------SRCP~CKSE~ 86 (97)
T COG3357 57 RPARCKKCGFEFRDDKIKKP-------SRCPKCKSEW 86 (97)
T ss_pred cChhhcccCccccccccCCc-------ccCCcchhhc
Confidence 45677789999977666432 3799998765
No 253
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=22.57 E-value=2.7e+02 Score=21.78 Aligned_cols=28 Identities=36% Similarity=0.413 Sum_probs=14.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhh
Q 014891 105 LKRKLEEGSRTEHLQAQKCRARLNHLES 132 (416)
Q Consensus 105 lkrkl~~~~~~e~~~~~~~~~Rl~~L~~ 132 (416)
++++++....+=......|+.+|..|+.
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555666666666653
No 254
>PLN03086 PRLI-interacting factor K; Provisional
Probab=22.47 E-value=62 Score=35.16 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=20.8
Q ss_pred ceeccCCccccHHHHHHHHHh--CCCceecCCCCcccC
Q 014891 371 PQVLPNGYVYSTKALEEMAKK--NNGKITCPRTGLVCN 406 (416)
Q Consensus 371 P~~lp~G~V~s~~al~~l~~~--~~~~~~CP~~~~~~~ 406 (416)
|+.=|||..+.+..|.+=... ....+.|++|+..+.
T Consensus 478 pv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 478 PLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred CccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 444457776655555432111 234678888888774
No 255
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=22.31 E-value=1.7e+02 Score=26.27 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhh
Q 014891 180 VFQEAKKVIDALQNKEVAPALAWCSDN 206 (416)
Q Consensus 180 ~f~~~~~I~~~L~~gdl~~AL~W~~~n 206 (416)
.|..+.+|--+|....+++|=.|.--.
T Consensus 105 d~~~A~~Ih~~L~t~h~~E~~~WmvGV 131 (157)
T PF07304_consen 105 DYDAADEIHVDLMTDHVDECGNWMVGV 131 (157)
T ss_dssp -HHHHHHHHHHHHHSSHHHHTTTHHHH
T ss_pred CHHHHHHHHHHHHhccHHHhhhHHHHH
Confidence 355566666666666666666666544
No 256
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=22.26 E-value=5.9e+02 Score=26.41 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCCCchhhhhcccccccccHHHHHHHHHhhhHHHHHhHH----HHHHHHHHhhhcCCCChhHHHHHHHH
Q 014891 22 PAAAGGMTPFPKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEIT----SVISNVADVSDSENFSKDDAVNHLTS 97 (416)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~le~~~~~vP~E~l~k~fr~~qk~ieke~~----~v~~~~~~l~~~~~~~~~~~~~~l~~ 97 (416)
|+..||..|+++--.++....+.. ++---+.|+.+.-..-..|+.|.+ .+.++++-.++ . +...+..|..
T Consensus 14 ~s~~g~c~s~~~~D~pdga~~~qk--~~~~~D~lr~kilk~teqikie~~srd~n~~sylkl~~~---A-Dk~Q~~rIkq 87 (455)
T KOG3850|consen 14 PSSEGTCDSSSSGDVPDGAKDVQK--LKEIKDSLRQKILKRTEQIKIEQSSRDGNVASYLKLVNN---A-DKQQVARIKQ 87 (455)
T ss_pred CCCCCCCCCCccCCCCCCcccHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHhhc---c-chhhhHHHHH
Confidence 344556655555555555544333 344444444443333344444443 34444443332 2 2233455666
Q ss_pred HHHHHH
Q 014891 98 LVSRLQ 103 (416)
Q Consensus 98 li~kl~ 103 (416)
+.+|.+
T Consensus 88 ~FEkkN 93 (455)
T KOG3850|consen 88 VFEKKN 93 (455)
T ss_pred HHHHhh
Confidence 655544
No 257
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=22.26 E-value=1.1e+03 Score=26.15 Aligned_cols=59 Identities=24% Similarity=0.438 Sum_probs=36.2
Q ss_pred HHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 014891 64 RAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQK 122 (416)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~ 122 (416)
+.+++|+..+...+.--.+..+.+.++.-..+--.+.|+..+.++|.+....|...+.+
T Consensus 289 ~~F~~EL~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~ 347 (657)
T KOG1854|consen 289 HQFEQELESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKR 347 (657)
T ss_pred HHHHHHHHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 44555555554422211111245667777888889999999999998866555544333
No 258
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=22.04 E-value=80 Score=28.29 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=0.0
Q ss_pred CCCCCcee-ccCCccccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 366 DTENPPQV-LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 366 ~~~NpP~~-lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
..+|.-++ -.||.-|+..--... .|+||.||.+....|
T Consensus 104 e~~~~~Y~Cp~c~~r~tf~eA~~~------~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 104 ETNNMFFICPNMCVRFTFNEAMEL------NFTCPRCGAMLDYLD 142 (158)
T ss_pred ccCCCeEECCCCCcEeeHHHHHHc------CCcCCCCCCEeeecc
No 259
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.94 E-value=78 Score=36.76 Aligned_cols=59 Identities=17% Similarity=0.367 Sum_probs=43.7
Q ss_pred CCCCCCCCeeeeccccccc--CCCCCcee--ccCCccccHHHHHHHHHhCCCceecCCCCcccCc
Q 014891 347 PYSKQHHSKLVCYITKELM--DTENPPQV--LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 407 (416)
Q Consensus 347 P~~~~~hS~~~Cpis~~~~--~~~NpP~~--lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~ 407 (416)
|..|..-+.=+|-|.|+.. +.+..|++ =-||.-+++.+. +.- ..+|.-.||.|+..|+.
T Consensus 7 ~~~~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye-~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 7 PPTRQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYE-RSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CccccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhh-hhcCCccCCccCCchhh
Confidence 3345555677899999987 55555665 578888999999 443 34567799999999983
No 260
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=1.2e+03 Score=26.28 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHhhhh
Q 014891 178 IEVFQEAKKVIDALQNKEVAPALAWCSDNKS 208 (416)
Q Consensus 178 ~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~ 208 (416)
++....+.+-...+.+++++|+..-....+.
T Consensus 308 ieact~aA~al~q~~~~~ldp~~l~m~Avkd 338 (867)
T KOG2148|consen 308 IEACTWAAKALRQLMNPNLDPIYLNMRAVKD 338 (867)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 4555566666777779999998877665543
No 261
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=21.91 E-value=3.6e+02 Score=21.07 Aligned_cols=27 Identities=7% Similarity=0.198 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhhhh
Q 014891 184 AKKVIDALQNKEVAPALAWCSDNKSRL 210 (416)
Q Consensus 184 ~~~I~~~L~~gdl~~AL~W~~~n~~~L 210 (416)
+.++.+++..||+....++++.+...+
T Consensus 3 ~~~l~~~~~~~~~~~~~~~l~~~~~~~ 29 (105)
T PF01399_consen 3 YSELLRAFRSGDLQEFEEFLEKHSESL 29 (105)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999994433
No 262
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=21.76 E-value=3.4e+02 Score=29.24 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=59.2
Q ss_pred CchhhhhcccccccccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014891 36 QLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (416)
Q Consensus 36 ~~~~~~~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~ 113 (416)
..+.++.+|+...+.=-|+++++=...+|.-+|....+...+..+.. ..+..++-.....-.+..+.++.+|..-+
T Consensus 105 aletLL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~Lg~--~ltd~dIN~laaqH~Ee~q~ie~kw~seL 180 (510)
T PF10154_consen 105 ALETLLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKAMQKLGI--SLTDRDINHLAAQHFEEQQRIESKWSSEL 180 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889998888888999999889999999988888888888765 34555566666667777777788876544
No 263
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=21.73 E-value=2.4e+02 Score=24.49 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHcCh
Q 014891 143 NTRVKRILVDYMLRMSY 159 (416)
Q Consensus 143 ~~~lnrlI~dyLlR~Gy 159 (416)
++.+.++|+++|++.|.
T Consensus 66 Kn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 66 KNFVSRLIAEHLYKSGM 82 (127)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 68999999999999995
No 264
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.71 E-value=5.3e+02 Score=24.36 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=43.5
Q ss_pred HHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 014891 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLK 211 (416)
Q Consensus 150 I~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~ 211 (416)
|+.-|+++|-.+.|-.+.+-.|-.- .+. +...-....|.++++.+|..|.+.+....+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l-~s~---~~~~~~~~~La~~~v~EAf~~~R~~~~~~~ 171 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPL-SSP---EALTLYFVALANGLVTEAFSFQRSYPDELR 171 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCC-CCH---HHHHHHHHHHHcCCHHHHHHHHHhCchhhh
Confidence 7777778899999999988877542 222 344445556999999999999999877543
No 265
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=21.69 E-value=5.2e+02 Score=22.15 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhc------CCCChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 014891 52 FEHYKKTIRTNHRAVEKEITSVISNVADVSDS------ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRA 125 (416)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~------~~~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~ 125 (416)
.+...+..+.+|...|+|+..=...+..|... ....-.......+.....+...+..|.+-...=..-+..++.
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34456677788888888886666666655441 001112334445555555555555555444333445666677
Q ss_pred HHHhhh
Q 014891 126 RLNHLE 131 (416)
Q Consensus 126 Rl~~L~ 131 (416)
|++-|.
T Consensus 113 r~~dL~ 118 (132)
T PF07926_consen 113 RIEDLN 118 (132)
T ss_pred HHHHHH
Confidence 777765
No 266
>PF14823 Sirohm_synth_C: Sirohaem biosynthesis protein C-terminal; PDB: 1KYQ_B.
Probab=21.59 E-value=1.4e+02 Score=23.16 Aligned_cols=36 Identities=14% Similarity=0.306 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhc
Q 014891 94 HLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESA 133 (416)
Q Consensus 94 ~l~~li~kl~~lkrkl~~~~~~e~~~~~~~~~Rl~~L~~~ 133 (416)
.+...|++|..|+++|-+...+. ...++|..-++.+
T Consensus 3 ~~g~AIe~vG~LR~~LR~~ap~~----~~~~~RM~Wm~~v 38 (70)
T PF14823_consen 3 NLGEAIENVGELRSRLREVAPDP----EDGKRRMRWMSQV 38 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHS-SC----CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCCc----hhHHHHHHHHHHH
Confidence 46778889999999987755433 3334465555433
No 267
>PLN02195 cellulose synthase A
Probab=21.46 E-value=79 Score=36.47 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=37.2
Q ss_pred eeeccccccc--CCCCCcee--ccCCccccHHHHHHHHHhCCCceecCCCCcccCc
Q 014891 356 LVCYITKELM--DTENPPQV--LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNY 407 (416)
Q Consensus 356 ~~Cpis~~~~--~~~NpP~~--lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~ 407 (416)
=+|-|.|+.. +.+..|++ =-||.-.++.+. +.- +.+|.-.||.|+..|+.
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eye-r~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYE-IKEGRKVCLRCGGPYDA 60 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchh-hhh-hhcCCccCCccCCcccc
Confidence 4788888866 44444555 579999999999 453 34567799999999983
No 268
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.40 E-value=1.4e+02 Score=24.93 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=26.0
Q ss_pred cccH-HHHHHHHHhhhHHHHHhHHHHHHHHHHh
Q 014891 49 RVPF-EHYKKTIRTNHRAVEKEITSVISNVADV 80 (416)
Q Consensus 49 ~vP~-E~l~k~fr~~qk~ieke~~~v~~~~~~l 80 (416)
+++= |.+++..++..|.+|+....+++.+.++
T Consensus 69 ~~~~~ee~k~~~~q~rK~~Ek~Aa~LT~~i~~~ 101 (101)
T PF09943_consen 69 RLAESEEVKKVLRQVRKDLEKNAAKLTRKIEKL 101 (101)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444 8999999999999999999888877653
No 269
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=21.39 E-value=1.4e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHhhh
Q 014891 179 EVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (416)
Q Consensus 179 ~~f~~~~~I~~~L~~gdl~~AL~W~~~n~ 207 (416)
....+..+|.++|.+||.+.|-+++..|-
T Consensus 95 ~~~~~h~~i~~ai~~~d~~~a~~~~~~h~ 123 (125)
T PF07729_consen 95 RSLEEHREIIDAIRAGDPEAAREALRQHI 123 (125)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45666778999999999999999998773
No 270
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=21.26 E-value=2.6e+02 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHHHcChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCh
Q 014891 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEV 196 (416)
Q Consensus 141 w~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~~~~d~~~f~~~~~I~~~L~~gdl 196 (416)
.....|+.+|-+|.+|.|.. +|-.+ ...=....++..+|++|..
T Consensus 8 L~~eTL~nLIeefv~ReGTd---------yG~~E---~sL~~kv~qv~~qL~~G~a 51 (70)
T PF06794_consen 8 LPPETLNNLIEEFVLREGTD---------YGEQE---LSLEEKVEQVKQQLKSGEA 51 (70)
T ss_dssp S-HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHHHHccCcc---------cCccc---ccHHHHHHHHHHHHHcCCE
Confidence 34678999999999999943 22211 1222445678888888764
No 271
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.22 E-value=3.6e+02 Score=22.61 Aligned_cols=41 Identities=29% Similarity=0.393 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHhhhh
Q 014891 92 VNHLTSLVSRLQGLKRKLEEGSRTEHLQ---AQKCRARLNHLES 132 (416)
Q Consensus 92 ~~~l~~li~kl~~lkrkl~~~~~~e~~~---~~~~~~Rl~~L~~ 132 (416)
.+.|..+.+.|..||..+.+...+...+ -..++.||..+..
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3478889999999999998888665543 3445677777653
No 272
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=46 Score=30.10 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=17.8
Q ss_pred CceecCCCCcccCcCCceecccC
Q 014891 394 GKITCPRTGLVCNYSDLVKAYIS 416 (416)
Q Consensus 394 ~~~~CP~~~~~~~~~~~~kvyi~ 416 (416)
.-+|||+|.+....+|+.--+||
T Consensus 137 ~g~KCPvC~K~V~sDd~e~HlvM 159 (205)
T KOG0801|consen 137 SGMKCPVCHKVVPSDDAEIHLVM 159 (205)
T ss_pred CCccCCccccccCCCcceEEEEE
Confidence 45899999999998887654443
No 273
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=20.91 E-value=49 Score=36.76 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=36.4
Q ss_pred eeecccccccCCCCCceeccCCccccHHHHHHHHHhCCCceecCCCCcccCcCC
Q 014891 356 LVCYITKELMDTENPPQVLPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYSD 409 (416)
Q Consensus 356 ~~Cpis~~~~~~~NpP~~lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~~ 409 (416)
+.|++..+ ..+++..+|||+++.+++.+.-...... .||.|.......+
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~-~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENA-PCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCC-CCcHHHHHHHHHH
Confidence 56777666 4568999999999999998876544333 8999987655443
No 274
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=20.84 E-value=3.7e+02 Score=23.97 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhh------------cCCCChhHHHHHHH
Q 014891 50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSD------------SENFSKDDAVNHLT 96 (416)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~------------~~~~~~~~~~~~l~ 96 (416)
.+...+.+.++..++.|+++.+.|...|.+=.- .|..+.+++...++
T Consensus 74 ~~~~~~~~~l~~~~~~v~~n~e~VG~~FAeEAR~iHyGea~~R~I~G~at~eE~~~L~e 132 (148)
T PF06676_consen 74 EPPAELEAALRKLRRHVEKNSEDVGDRFAEEARKIHYGEAEERGIYGEATPEEAKELIE 132 (148)
T ss_pred ccHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHcCCCccccCcCcCCHHHHHHHHH
Confidence 677889999999999999999999999987432 13456666655554
No 275
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=20.83 E-value=2.7e+02 Score=20.18 Aligned_cols=52 Identities=19% Similarity=0.055 Sum_probs=38.5
Q ss_pred HhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHHHHhcCChHHHHHHHHHhcc
Q 014891 191 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 247 (416)
Q Consensus 191 L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIELir~~~~~eAi~yar~~l~ 247 (416)
+.+++++.|+++++.--.. + +-...++...-.=+.+.|+..+|+....+.+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~----~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALEL----D-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHHh----C-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5689999999988765322 2 22566667777777888999999999987664
No 276
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.80 E-value=3.4e+02 Score=27.04 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHH---HHHHHHhhh--HHHHHHHHHHHHHH
Q 014891 53 EHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQG---LKRKLEEGS--RTEHLQAQKCRARL 127 (416)
Q Consensus 53 E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~---lkrkl~~~~--~~e~~~~~~~~~Rl 127 (416)
|+++.+.|..-..|..+=..++..+..--..+-..-.--+..|+.++.|++. |=.|+.... +|=.+...-++..|
T Consensus 38 elIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL 117 (324)
T PF12126_consen 38 ELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREAL 117 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4445555555555544444444433332110000011123455556665542 223332222 22235566667778
Q ss_pred Hhhhh
Q 014891 128 NHLES 132 (416)
Q Consensus 128 ~~L~~ 132 (416)
.+|..
T Consensus 118 ~rLrq 122 (324)
T PF12126_consen 118 ERLRQ 122 (324)
T ss_pred HHhhh
Confidence 88874
No 277
>PF02813 Retro_M: Retroviral M domain; InterPro: IPR004028 The Gag polyprotein directs the assembly and release of virus particles from infected cells. The Gag polyprotein has three domains required for activity: an N-terminal membrane-binding (M) domain that directs Gag to the plasma membrane, an interaction (I) domain involved in Gag aggregation, and a late assembly (L) domain that mediates the budding process []. During viral maturation, the Gag polyprotein is then cleaved into major structural proteins by the viral protease, yielding the matrix, capsid, nucleoprotein, and some smaller peptides. In Rous sarcoma virus (RSV), the M domain consists of the first 85 residues of the matrix protein. However, unlike other Gag polyproteins, the M domain of RSV Gag is not myristylated, but retains full activity [].This domain forms an alpha helical bundle structure []. This entry represents the M domain of the Gag polyprotein found in avian retroviruses. This entry also identifies Gag polyproteins from several avian endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; PDB: 1A6S_A.
Probab=20.78 E-value=1.3e+02 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.398 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcccCCCCcchhhhhcCcccHHHHHHHHHHHH
Q 014891 255 KELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEF 295 (416)
Q Consensus 255 ~ei~~lm~lLaf~~~~~~spY~~L~~~~rw~~L~~~F~~~~ 295 (416)
+||..++.+|--.-... +| +++|++.+|+.+-..|.+-.
T Consensus 23 Kei~a~Ls~L~~Eg~L~-sP-sdi~~~~~Wd~~Ta~lsQra 61 (86)
T PF02813_consen 23 KEIGAMLSLLQKEGLLT-SP-SDIYSPGSWDPITAALSQRA 61 (86)
T ss_dssp SHHHHHHHTGGGTT-TT--G-GGGGSTTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCcC-Ch-hhccCCCcchHHHHHHHHHH
Confidence 56777776665433332 45 78999999999888776643
No 278
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=20.60 E-value=1.4e+02 Score=27.99 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=29.6
Q ss_pred hccHHHHHHHHHHHHHHcChHHHHHHHHHHhCCC
Q 014891 140 EWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (416)
Q Consensus 140 ~w~~~~lnrlI~dyLlR~Gy~etA~~l~~esgi~ 173 (416)
.|.....-|++..||-+.||.++-++|.+++++.
T Consensus 162 ~~re~eaiRlcLKHlRq~~y~~aFesLqk~t~v~ 195 (199)
T PF06588_consen 162 KYREKEAIRLCLKHLRQRGYLEAFESLQKQTGVQ 195 (199)
T ss_pred HHHHHHHHHHHHHHhhhcCchhHHHHHHHHcCCC
Confidence 3445667799999999999999999999999885
No 279
>smart00030 CLb CLUSTERIN Beta chain.
Probab=20.50 E-value=7.2e+02 Score=23.38 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHhhhHHHHHhHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHhhh
Q 014891 50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (416)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~l~~li~kl~~lkrkl~~~~ 113 (416)
+|-+.|+.--..+.|.|++|+.+.+..+++++.-- +...+.-..++..|+.-|++=+++.
T Consensus 4 ~~~~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~m----er~~eeh~~ll~tLe~~kk~KeeAl 63 (206)
T smart00030 4 VSDNELQEMSTQGSKYINKEIKNALKGVKQIKTLI----EKTNKERKSLLSTLEEAKKKKEEAL 63 (206)
T ss_pred CChhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888889999999999999999999887510 0011234455566665555544443
No 280
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=76 Score=32.31 Aligned_cols=59 Identities=12% Similarity=0.198 Sum_probs=41.8
Q ss_pred CCCCCCCeeeecccccccCCCC-----CceeccCCccccHHHHHHHHHhCC----CceecCCCCcccC
Q 014891 348 YSKQHHSKLVCYITKELMDTEN-----PPQVLPNGYVYSTKALEEMAKKNN----GKITCPRTGLVCN 406 (416)
Q Consensus 348 ~~~~~hS~~~Cpis~~~~~~~N-----pP~~lp~G~V~s~~al~~l~~~~~----~~~~CP~~~~~~~ 406 (416)
+++.--+-..|-|.++...+-. --.+.+|-|.++.+++.+|..... -...||.|....+
T Consensus 154 ~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 154 FALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 3444467789999999887754 223356999999999999963221 2468999986543
No 281
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=20.37 E-value=5.2e+02 Score=21.64 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHHhcCChHHHHHHHHhhhhh
Q 014891 189 DALQNKEVAPALAWCSDNKSR 209 (416)
Q Consensus 189 ~~L~~gdl~~AL~W~~~n~~~ 209 (416)
.+|...|++.|++++....|.
T Consensus 88 ~~I~~kdfd~A~~~I~~W~p~ 108 (116)
T PF10552_consen 88 KDIPRKDFDEALEFINNWEPS 108 (116)
T ss_pred HhhhHHHHHHHHHHHHHcCCC
Confidence 456778889999999888764
No 282
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=20.34 E-value=58 Score=21.96 Aligned_cols=12 Identities=33% Similarity=0.800 Sum_probs=8.7
Q ss_pred ecCCCCcccCcC
Q 014891 397 TCPRTGLVCNYS 408 (416)
Q Consensus 397 ~CP~~~~~~~~~ 408 (416)
.||+|++.|.+.
T Consensus 4 ~CprC~kg~Hwa 15 (36)
T PF14787_consen 4 LCPRCGKGFHWA 15 (36)
T ss_dssp C-TTTSSSCS-T
T ss_pred cCcccCCCcchh
Confidence 699999999764
No 283
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=20.32 E-value=1.1e+03 Score=25.41 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhcccc
Q 014891 222 RLQEFIELVRGENNLRAITYARKYLAPW 249 (416)
Q Consensus 222 r~q~fIELir~~~~~eAi~yar~~l~~~ 249 (416)
-.|+-|+......+..-+...|.|+..+
T Consensus 455 VVQkmi~~~~~~q~~~i~~rI~~h~~~L 482 (503)
T KOG1488|consen 455 VVQKMIDICGPEQRELIKSRVKPHASRL 482 (503)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3566666665445555555566555543
No 284
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=20.25 E-value=7.6e+02 Score=23.90 Aligned_cols=82 Identities=10% Similarity=0.217 Sum_probs=38.3
Q ss_pred cccHHHHHHHHHhhh--HHHHHhHHHHHHHHHHhhh----cCC-CChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 014891 49 RVPFEHYKKTIRTNH--RAVEKEITSVISNVADVSD----SEN-FSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQ 121 (416)
Q Consensus 49 ~vP~E~l~k~fr~~q--k~ieke~~~v~~~~~~l~~----~~~-~~~~~~~~~l~~li~kl~~lkrkl~~~~~~e~~~~~ 121 (416)
..+||.+++.|+... ..+.+=+..+...+.++.. +.. .........++.+-+.++.++++-.....+....++
T Consensus 192 ~~~y~~l~~~f~~~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~ 271 (284)
T PF12805_consen 192 HYDYEELREQFKHSDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQDQPENREALLALR 271 (284)
T ss_pred cccHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 468999999888332 2223333333333333333 111 223344555555555555555551111222234455
Q ss_pred HHHHHHHhh
Q 014891 122 KCRARLNHL 130 (416)
Q Consensus 122 ~~~~Rl~~L 130 (416)
.+..+++++
T Consensus 272 ~l~~~l~~i 280 (284)
T PF12805_consen 272 NLLDNLRNI 280 (284)
T ss_pred HHHHHHHHH
Confidence 555555543
No 285
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=20.24 E-value=1.6e+02 Score=24.67 Aligned_cols=47 Identities=15% Similarity=0.230 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHH
Q 014891 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (416)
Q Consensus 181 f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fI 227 (416)
-.....|.+++.++||+.|-.-..+....-++....+.|-+..+++=
T Consensus 29 ~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid 75 (121)
T PF14276_consen 29 EEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEID 75 (121)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHH
Confidence 35567899999999999999999999888888887777777777654
No 286
>PLN02189 cellulose synthase
Probab=20.11 E-value=75 Score=36.89 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=39.2
Q ss_pred CCCeeeeccccccc--CCCCCcee-c-cCCccccHHHHHHHHHhCCCceecCCCCcccC
Q 014891 352 HHSKLVCYITKELM--DTENPPQV-L-PNGYVYSTKALEEMAKKNNGKITCPRTGLVCN 406 (416)
Q Consensus 352 ~hS~~~Cpis~~~~--~~~NpP~~-l-p~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~ 406 (416)
-.+.=+|.|.|+.. +.+..|++ - -||.-+|+.+.+-= ..+|.-.||.|+..|+
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeye--r~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYE--RREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhh--hhcCCccCcccCCchh
Confidence 33445899999987 35555555 3 48889999999533 3456779999999998
No 287
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=20.05 E-value=1.2e+02 Score=24.14 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=22.2
Q ss_pred Ceeeeccccccc--CCCCCcee--ccCCccccHHHHHHHHHhCCCceecCCCCcccCcC
Q 014891 354 SKLVCYITKELM--DTENPPQV--LPNGYVYSTKALEEMAKKNNGKITCPRTGLVCNYS 408 (416)
Q Consensus 354 S~~~Cpis~~~~--~~~NpP~~--lp~G~V~s~~al~~l~~~~~~~~~CP~~~~~~~~~ 408 (416)
+-=+|-|-|+.. +++..|++ --||.-+++-+.+-= ...|.-.||.|+..|+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE--rkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE--RKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH--HHTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH--hhcCcccccccCCCcccc
Confidence 445788988887 55555666 578888898888532 235677999999888643
No 288
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=20.04 E-value=8.4e+02 Score=23.95 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHHHHHHcChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhhhhccchHHHHhHHHHHHH
Q 014891 150 LVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (416)
Q Consensus 150 I~dyLlR~Gy~etA~~l~~es-gi~~~~d~~~f~~~~~I~~~L~~gdl~~AL~W~~~n~~~L~k~~S~LeF~Lr~q~fIE 228 (416)
++..+++.|.++.|....++. .+.+ .+.+.... ...-....|+.+.|++++.+.-.. ++.........--.-
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~l~~~ 258 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADP-QCVRASIL--LGDLALAQGDYAAAIEALERVEEQ----DPEYLSEVLPKLMEC 258 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHH----ChhhHHHHHHHHHHH
Confidence 444555666666665554433 1111 11221111 122234467777777776654321 111000000000111
Q ss_pred HHhcCChHHHHHHHHHhc
Q 014891 229 LVRGENNLRAITYARKYL 246 (416)
Q Consensus 229 Lir~~~~~eAi~yar~~l 246 (416)
+.+.|+..+|+.+.++.+
T Consensus 259 ~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 259 YQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 335577777777776543
Done!