Query 014892
Match_columns 416
No_of_seqs 201 out of 1492
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 01:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02361 alpha-amylase 100.0 9.4E-83 2E-87 624.3 42.0 393 24-416 7-401 (401)
2 PLN00196 alpha-amylase; Provis 100.0 5.3E-80 1.2E-84 612.0 41.1 386 27-416 23-427 (428)
3 PLN02784 alpha-amylase 100.0 4.6E-74 1E-78 590.0 42.3 396 17-416 491-893 (894)
4 PRK09441 cytoplasmic alpha-amy 100.0 8.6E-69 1.9E-73 545.9 37.0 349 27-394 2-430 (479)
5 PRK10785 maltodextrin glucosid 100.0 1.2E-67 2.7E-72 548.0 28.1 323 43-393 176-559 (598)
6 TIGR02456 treS_nterm trehalose 100.0 6.5E-64 1.4E-68 516.3 31.0 367 27-411 4-516 (539)
7 PRK09505 malS alpha-amylase; R 100.0 1.7E-63 3.6E-68 516.3 32.0 342 27-392 188-681 (683)
8 TIGR02403 trehalose_treC alpha 100.0 6.8E-62 1.5E-66 500.3 29.5 349 27-395 3-502 (543)
9 PRK10933 trehalose-6-phosphate 100.0 1.6E-61 3.4E-66 496.9 31.3 366 22-409 5-528 (551)
10 TIGR02402 trehalose_TreZ malto 100.0 1.8E-57 3.9E-62 466.1 29.3 332 26-395 91-537 (542)
11 TIGR02104 pulA_typeI pullulana 100.0 1.6E-56 3.4E-61 466.5 25.9 363 25-410 124-600 (605)
12 PRK12313 glycogen branching en 100.0 2.6E-55 5.7E-60 459.9 31.9 353 27-410 146-585 (633)
13 TIGR01515 branching_enzym alph 100.0 6.1E-55 1.3E-59 454.3 31.0 352 29-409 139-571 (613)
14 TIGR02100 glgX_debranch glycog 100.0 1.2E-53 2.7E-58 446.2 32.1 362 22-408 149-660 (688)
15 PRK05402 glycogen branching en 100.0 1.1E-53 2.4E-58 452.7 30.7 355 27-410 240-681 (726)
16 PF00128 Alpha-amylase: Alpha 100.0 1.1E-55 2.4E-60 426.5 12.0 280 43-343 1-311 (316)
17 PRK03705 glycogen debranching 100.0 3.7E-53 8E-58 439.4 28.3 354 24-406 146-631 (658)
18 PRK14706 glycogen branching en 100.0 1.2E-51 2.6E-56 427.5 31.9 351 28-409 144-579 (639)
19 PRK14510 putative bifunctional 100.0 4.1E-50 8.8E-55 440.8 27.4 321 25-372 155-581 (1221)
20 PRK12568 glycogen branching en 100.0 6.2E-49 1.3E-53 406.3 31.8 355 25-409 243-685 (730)
21 TIGR02102 pullulan_Gpos pullul 100.0 9E-49 2E-53 420.7 33.6 344 26-394 449-948 (1111)
22 PRK13840 sucrose phosphorylase 100.0 9.3E-49 2E-53 390.4 28.3 330 29-392 4-466 (495)
23 TIGR03852 sucrose_gtfA sucrose 100.0 2.3E-48 4.9E-53 385.4 26.1 333 29-395 2-463 (470)
24 PLN02960 alpha-amylase 100.0 1.2E-47 2.5E-52 397.1 32.2 349 27-409 394-846 (897)
25 PRK14705 glycogen branching en 100.0 1.3E-47 2.7E-52 414.1 30.9 353 28-410 747-1180(1224)
26 PLN02447 1,4-alpha-glucan-bran 100.0 2.5E-44 5.5E-49 372.7 31.6 350 27-409 228-686 (758)
27 COG0366 AmyA Glycosidases [Car 100.0 5.7E-45 1.2E-49 375.3 20.0 355 29-394 1-485 (505)
28 TIGR02103 pullul_strch alpha-1 100.0 3E-43 6.5E-48 371.6 25.9 355 25-394 249-844 (898)
29 TIGR02455 TreS_stutzeri trehal 100.0 3.4E-41 7.5E-46 337.3 31.1 346 49-415 77-680 (688)
30 PLN02877 alpha-amylase/limit d 100.0 1.5E-41 3.1E-46 357.8 27.8 345 26-382 337-887 (970)
31 KOG0471 Alpha-amylase [Carbohy 100.0 5.2E-42 1.1E-46 351.0 23.1 363 28-394 17-505 (545)
32 COG0296 GlgB 1,4-alpha-glucan 100.0 5.6E-41 1.2E-45 339.7 24.9 348 28-407 144-582 (628)
33 TIGR02401 trehalose_TreY malto 100.0 1.7E-39 3.6E-44 338.2 31.7 185 39-225 9-287 (825)
34 COG1523 PulA Type II secretory 100.0 2.4E-40 5.3E-45 340.4 17.6 318 22-368 165-596 (697)
35 KOG2212 Alpha-amylase [Carbohy 100.0 1.1E-36 2.5E-41 279.7 23.4 358 22-410 22-465 (504)
36 PRK14511 maltooligosyl trehalo 100.0 2.1E-33 4.6E-38 293.7 28.6 85 39-123 13-99 (879)
37 PLN03244 alpha-amylase; Provis 100.0 4.8E-32 1E-36 276.3 28.9 296 79-408 427-820 (872)
38 KOG0470 1,4-alpha-glucan branc 100.0 2.9E-32 6.4E-37 273.8 17.4 165 24-202 225-408 (757)
39 smart00642 Aamy Alpha-amylase 99.9 7.6E-28 1.6E-32 210.2 10.4 92 29-120 1-97 (166)
40 PRK14507 putative bifunctional 99.9 3.1E-22 6.8E-27 221.8 17.9 83 38-120 750-834 (1693)
41 COG3280 TreY Maltooligosyl tre 99.8 1.5E-19 3.2E-24 182.0 15.3 78 44-121 17-96 (889)
42 TIGR01531 glyc_debranch glycog 99.8 6.1E-17 1.3E-21 175.1 25.7 81 43-123 129-215 (1464)
43 PF14872 GHL5: Hypothetical gl 99.3 6.2E-11 1.4E-15 118.5 17.8 152 22-201 173-393 (811)
44 PF14701 hDGE_amylase: glucano 99.0 8E-10 1.7E-14 108.5 7.9 84 43-126 19-110 (423)
45 PF02324 Glyco_hydro_70: Glyco 99.0 2.3E-08 5E-13 101.3 16.3 204 159-382 139-422 (809)
46 PF02324 Glyco_hydro_70: Glyco 98.5 1.8E-07 3.8E-12 95.0 7.6 99 22-120 558-674 (809)
47 PF02638 DUF187: Glycosyl hydr 98.5 7.7E-07 1.7E-11 85.8 10.8 140 44-196 17-161 (311)
48 PF14871 GHL6: Hypothetical gl 98.4 5.8E-06 1.2E-10 69.2 11.7 125 49-197 3-132 (132)
49 PF07821 Alpha-amyl_C2: Alpha- 98.2 4.6E-06 9.9E-11 58.6 6.5 53 364-416 7-59 (59)
50 PF11941 DUF3459: Domain of un 98.1 1.3E-05 2.9E-10 62.3 7.1 47 349-395 1-54 (89)
51 KOG3625 Alpha amylase [Carbohy 97.9 1.1E-05 2.5E-10 84.2 4.6 82 43-124 139-228 (1521)
52 COG1649 Uncharacterized protei 97.8 0.00011 2.5E-09 72.4 9.3 134 44-198 62-208 (418)
53 smart00810 Alpha-amyl_C2 Alpha 97.7 0.00026 5.7E-09 50.2 7.8 51 364-416 7-61 (61)
54 PLN02635 disproportionating en 97.7 0.0024 5.3E-08 65.7 17.3 61 21-81 23-90 (538)
55 PRK14508 4-alpha-glucanotransf 97.6 0.0068 1.5E-07 62.2 19.9 56 26-81 5-63 (497)
56 cd06592 GH31_glucosidase_KIAA1 97.5 0.0012 2.5E-08 63.7 11.3 136 43-200 27-166 (303)
57 cd06593 GH31_xylosidase_YicI Y 97.4 0.001 2.2E-08 64.3 10.7 139 43-203 21-163 (308)
58 cd06597 GH31_transferase_CtsY 97.3 0.00087 1.9E-08 65.7 8.2 149 44-200 22-188 (340)
59 PF02065 Melibiase: Melibiase; 97.2 0.007 1.5E-07 60.2 13.8 135 44-201 56-195 (394)
60 cd06599 GH31_glycosidase_Aec37 97.1 0.0048 1E-07 59.9 10.7 137 45-199 28-168 (317)
61 PF13199 Glyco_hydro_66: Glyco 96.8 0.0097 2.1E-07 61.6 10.8 146 44-199 116-268 (559)
62 PF13200 DUF4015: Putative gly 96.6 0.069 1.5E-06 51.4 14.4 133 44-200 11-148 (316)
63 PRK14507 putative bifunctional 96.3 0.013 2.9E-07 67.4 9.1 54 158-211 1036-1091(1693)
64 cd06594 GH31_glucosidase_YihQ 96.3 0.0087 1.9E-07 58.0 6.7 142 44-202 21-169 (317)
65 PF14488 DUF4434: Domain of un 96.3 0.019 4.1E-07 50.2 8.1 85 28-116 2-88 (166)
66 PRK14582 pgaB outer membrane N 96.3 0.069 1.5E-06 56.6 13.3 151 23-197 308-466 (671)
67 COG3280 TreY Maltooligosyl tre 96.2 0.0041 8.9E-08 64.7 3.9 62 160-221 267-331 (889)
68 cd06591 GH31_xylosidase_XylS X 96.2 0.013 2.8E-07 56.9 7.0 136 43-200 21-160 (319)
69 PF00150 Cellulase: Cellulase 95.1 0.04 8.7E-07 52.0 5.9 80 26-116 4-85 (281)
70 cd06602 GH31_MGAM_SI_GAA This 95.0 0.065 1.4E-06 52.5 7.0 141 44-200 22-166 (339)
71 cd06598 GH31_transferase_CtsZ 95.0 0.064 1.4E-06 52.0 6.8 137 44-199 22-164 (317)
72 PRK10658 putative alpha-glucos 94.9 0.051 1.1E-06 58.0 6.5 95 94-202 326-421 (665)
73 PF07745 Glyco_hydro_53: Glyco 94.9 0.1 2.2E-06 50.7 8.0 53 49-114 27-79 (332)
74 COG3589 Uncharacterized conser 94.9 0.099 2.2E-06 49.9 7.5 56 46-115 16-71 (360)
75 cd06542 GH18_EndoS-like Endo-b 94.8 0.15 3.3E-06 47.7 8.8 64 91-197 49-112 (255)
76 PRK10426 alpha-glucosidase; Pr 94.8 0.12 2.7E-06 54.9 8.9 140 45-202 220-366 (635)
77 cd06600 GH31_MGAM-like This fa 94.8 0.073 1.6E-06 51.7 6.7 137 43-200 21-161 (317)
78 PF05913 DUF871: Bacterial pro 94.5 0.041 8.9E-07 54.0 4.2 60 43-116 11-70 (357)
79 PF01055 Glyco_hydro_31: Glyco 93.7 0.049 1.1E-06 55.4 3.2 136 44-200 41-181 (441)
80 KOG3625 Alpha amylase [Carbohy 93.7 0.9 1.9E-05 49.0 12.0 64 161-226 496-568 (1521)
81 cd06562 GH20_HexA_HexB-like Be 93.5 0.76 1.7E-05 45.2 10.9 121 44-189 16-149 (348)
82 PF02446 Glyco_hydro_77: 4-alp 93.4 0.29 6.2E-06 50.6 8.2 44 43-86 15-61 (496)
83 TIGR00217 malQ 4-alpha-glucano 93.3 0.78 1.7E-05 47.5 11.1 46 26-71 14-61 (513)
84 smart00632 Aamy_C Aamy_C domai 92.7 0.33 7.2E-06 36.8 5.6 35 374-408 7-49 (81)
85 cd06604 GH31_glucosidase_II_Ma 92.6 0.31 6.7E-06 47.8 6.7 134 44-199 22-159 (339)
86 cd02875 GH18_chitobiase Chitob 92.5 0.32 6.9E-06 48.0 6.7 47 168-214 91-146 (358)
87 cd06570 GH20_chitobiase-like_1 92.4 1.5 3.3E-05 42.3 11.1 124 44-187 16-145 (311)
88 cd06595 GH31_xylosidase_XylS-l 92.4 0.27 5.8E-06 47.1 5.8 130 43-199 22-159 (292)
89 cd06589 GH31 The enzymes of gl 92.2 1 2.2E-05 42.5 9.5 94 43-201 21-118 (265)
90 cd06545 GH18_3CO4_chitinase Th 92.1 1.1 2.4E-05 41.9 9.5 81 92-215 45-130 (253)
91 cd06568 GH20_SpHex_like A subg 92.0 1.7 3.6E-05 42.5 11.0 125 44-188 16-153 (329)
92 cd06601 GH31_lyase_GLase GLase 92.0 0.55 1.2E-05 45.8 7.5 109 44-199 22-133 (332)
93 PLN02950 4-alpha-glucanotransf 91.9 0.5 1.1E-05 52.1 7.8 72 25-96 259-339 (909)
94 COG1501 Alpha-glucosidases, fa 91.8 0.36 7.7E-06 52.3 6.5 95 94-202 322-418 (772)
95 KOG1065 Maltase glucoamylase a 91.8 1.8 3.9E-05 46.5 11.3 135 42-198 307-447 (805)
96 PRK11052 malQ 4-alpha-glucanot 91.4 1.6 3.4E-05 46.9 10.8 43 28-70 144-189 (695)
97 PF02806 Alpha-amylase_C: Alph 91.2 0.49 1.1E-05 36.8 5.2 42 372-413 6-60 (95)
98 PLN02763 hydrolase, hydrolyzin 90.3 0.84 1.8E-05 50.4 7.6 133 44-198 199-335 (978)
99 PF10438 Cyc-maltodext_C: Cycl 90.3 0.44 9.5E-06 35.9 3.9 43 371-413 5-62 (78)
100 cd06603 GH31_GANC_GANAB_alpha 89.9 0.6 1.3E-05 45.8 5.7 136 43-199 21-162 (339)
101 cd06564 GH20_DspB_LnbB-like Gl 89.6 2.3 5E-05 41.4 9.5 122 44-189 15-155 (326)
102 PLN03236 4-alpha-glucanotransf 89.6 0.79 1.7E-05 49.2 6.5 72 25-96 59-139 (745)
103 cd06569 GH20_Sm-chitobiase-lik 89.6 0.96 2.1E-05 46.0 6.9 77 44-120 20-125 (445)
104 PF02449 Glyco_hydro_42: Beta- 89.4 0.68 1.5E-05 46.0 5.7 122 46-198 10-137 (374)
105 PRK11052 malQ 4-alpha-glucanot 89.3 0.95 2.1E-05 48.5 6.9 56 43-99 165-223 (695)
106 cd02871 GH18_chitinase_D-like 89.1 2 4.3E-05 41.6 8.6 63 90-198 57-119 (312)
107 COG1640 MalQ 4-alpha-glucanotr 89.0 5 0.00011 41.3 11.5 46 26-71 12-61 (520)
108 TIGR01370 cysRS possible cyste 86.9 3.7 7.9E-05 39.7 8.7 40 160-200 132-171 (315)
109 cd06546 GH18_CTS3_chitinase GH 86.2 9.7 0.00021 35.7 11.0 46 170-215 93-142 (256)
110 PRK14510 putative bifunctional 85.7 1.4 3.1E-05 50.4 6.0 68 27-94 724-799 (1221)
111 cd06563 GH20_chitobiase-like T 85.5 7.3 0.00016 38.5 10.3 126 45-188 17-164 (357)
112 PF14883 GHL13: Hypothetical g 84.9 16 0.00034 34.7 11.5 124 46-195 17-142 (294)
113 PF03198 Glyco_hydro_72: Gluca 84.8 1.3 2.8E-05 42.4 4.4 56 44-120 51-106 (314)
114 PF13380 CoA_binding_2: CoA bi 84.8 1.7 3.8E-05 35.3 4.7 43 45-111 65-107 (116)
115 cd02874 GH18_CFLE_spore_hydrol 84.8 6.3 0.00014 38.0 9.4 46 169-214 83-134 (313)
116 cd06565 GH20_GcnA-like Glycosy 84.5 3.4 7.3E-05 39.8 7.3 112 44-189 15-131 (301)
117 TIGR03849 arch_ComA phosphosul 84.3 3.1 6.6E-05 38.4 6.4 46 50-113 75-120 (237)
118 PF01301 Glyco_hydro_35: Glyco 84.1 0.84 1.8E-05 44.3 2.9 55 50-113 28-83 (319)
119 PF10566 Glyco_hydro_97: Glyco 83.9 13 0.00028 35.2 10.6 61 44-111 30-91 (273)
120 PF11852 DUF3372: Domain of un 83.8 2.4 5.1E-05 36.9 5.2 49 346-394 43-115 (168)
121 smart00812 Alpha_L_fucos Alpha 82.3 16 0.00035 36.5 11.2 117 49-200 84-204 (384)
122 TIGR03356 BGL beta-galactosida 82.0 8.4 0.00018 39.0 9.3 64 44-114 52-115 (427)
123 cd02742 GH20_hexosaminidase Be 81.4 4.2 9.2E-05 39.1 6.6 122 44-188 14-147 (303)
124 COG3867 Arabinogalactan endo-1 80.3 5.4 0.00012 37.8 6.5 55 49-113 66-124 (403)
125 PF02679 ComA: (2R)-phospho-3- 80.3 4.3 9.4E-05 37.6 5.9 48 48-113 86-133 (244)
126 PLN03236 4-alpha-glucanotransf 80.2 3.8 8.2E-05 44.2 6.2 24 93-116 274-297 (745)
127 PF02446 Glyco_hydro_77: 4-alp 79.8 1.7 3.6E-05 45.0 3.4 38 187-224 276-336 (496)
128 PRK15452 putative protease; Pr 79.7 12 0.00027 38.0 9.5 49 51-111 15-64 (443)
129 PLN03059 beta-galactosidase; P 79.5 3.9 8.6E-05 44.4 6.1 54 50-112 63-117 (840)
130 PF09081 DUF1921: Domain of un 79.3 9.1 0.0002 25.4 5.4 40 376-415 5-51 (51)
131 PRK10076 pyruvate formate lyas 79.2 6.6 0.00014 35.7 6.8 66 45-111 144-211 (213)
132 cd07937 DRE_TIM_PC_TC_5S Pyruv 78.3 44 0.00096 31.6 12.4 94 48-214 93-188 (275)
133 PF01120 Alpha_L_fucos: Alpha- 77.6 10 0.00022 37.3 8.0 63 48-111 93-156 (346)
134 cd06547 GH85_ENGase Endo-beta- 77.1 3.5 7.6E-05 40.4 4.6 44 171-214 85-136 (339)
135 cd00598 GH18_chitinase-like Th 77.0 11 0.00023 33.7 7.6 47 169-215 84-139 (210)
136 KOG0496 Beta-galactosidase [Ca 76.6 4.6 0.0001 42.3 5.4 56 50-113 53-108 (649)
137 PF00724 Oxidored_FMN: NADH:fl 76.3 21 0.00045 35.0 9.8 71 47-122 37-107 (341)
138 PF08821 CGGC: CGGC domain; I 75.9 12 0.00026 30.1 6.5 54 45-111 51-104 (107)
139 TIGR01210 conserved hypothetic 75.3 5.9 0.00013 38.3 5.6 60 49-116 117-178 (313)
140 PLN02950 4-alpha-glucanotransf 75.3 8.1 0.00018 42.9 7.2 24 93-116 461-484 (909)
141 PF00728 Glyco_hydro_20: Glyco 75.2 3.5 7.6E-05 40.4 4.1 134 44-195 16-162 (351)
142 PF14701 hDGE_amylase: glucano 74.5 5.5 0.00012 40.0 5.2 52 161-214 361-417 (423)
143 PF13204 DUF4038: Protein of u 74.4 3.9 8.4E-05 39.1 4.0 70 44-117 28-110 (289)
144 cd07944 DRE_TIM_HOA_like 4-hyd 74.3 45 0.00097 31.4 11.2 105 30-214 72-177 (266)
145 PF01373 Glyco_hydro_14: Glyco 74.0 4.9 0.00011 39.9 4.7 69 40-121 10-81 (402)
146 COG2730 BglC Endoglucanase [Ca 73.9 6.4 0.00014 39.6 5.6 59 48-113 75-136 (407)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 72.2 51 0.0011 30.9 11.0 39 175-214 141-180 (263)
148 PRK08208 coproporphyrinogen II 71.3 8.1 0.00018 39.2 5.7 63 50-120 142-205 (430)
149 PRK08207 coproporphyrinogen II 71.1 10 0.00022 39.2 6.4 64 49-120 269-333 (488)
150 TIGR00539 hemN_rel putative ox 71.1 8.9 0.00019 37.8 5.9 63 50-120 101-164 (360)
151 PRK05628 coproporphyrinogen II 70.3 9.2 0.0002 38.0 5.8 32 89-120 140-172 (375)
152 PRK07094 biotin synthase; Prov 70.3 8.6 0.00019 37.2 5.5 36 84-120 157-192 (323)
153 PF07488 Glyco_hydro_67M: Glyc 69.7 17 0.00037 34.6 6.9 68 34-113 45-112 (328)
154 smart00518 AP2Ec AP endonuclea 69.1 61 0.0013 30.2 10.9 53 47-111 11-63 (273)
155 PF09260 DUF1966: Domain of un 68.7 13 0.00028 28.9 5.1 43 371-413 2-61 (91)
156 PRK13210 putative L-xylulose 5 68.6 10 0.00023 35.6 5.6 53 48-111 18-70 (284)
157 COG0520 csdA Selenocysteine ly 68.3 17 0.00036 36.6 7.2 83 24-114 108-200 (405)
158 PRK01060 endonuclease IV; Prov 68.1 11 0.00024 35.4 5.7 52 46-109 12-63 (281)
159 COG0041 PurE Phosphoribosylcar 68.0 17 0.00036 31.0 5.9 51 43-112 13-63 (162)
160 PRK15447 putative protease; Pr 67.5 13 0.00028 35.8 5.9 50 48-111 17-66 (301)
161 PRK06256 biotin synthase; Vali 67.1 8.9 0.00019 37.4 4.9 59 50-117 153-211 (336)
162 PRK05660 HemN family oxidoredu 67.0 12 0.00027 37.2 5.9 63 50-120 108-171 (378)
163 PRK15014 6-phospho-beta-glucos 66.6 31 0.00068 35.5 8.8 64 44-113 67-130 (477)
164 PRK09936 hypothetical protein; 66.3 14 0.0003 35.1 5.6 83 17-116 11-95 (296)
165 PF07071 DUF1341: Protein of u 66.2 17 0.00037 32.5 5.8 44 48-109 137-180 (218)
166 PRK09852 cryptic 6-phospho-bet 66.1 29 0.00062 35.7 8.4 64 44-113 69-132 (474)
167 TIGR00433 bioB biotin syntheta 65.9 16 0.00034 34.8 6.3 60 49-117 123-182 (296)
168 PRK08195 4-hyroxy-2-oxovalerat 63.6 81 0.0017 30.9 10.7 69 92-214 114-183 (337)
169 PRK05904 coproporphyrinogen II 63.5 15 0.00033 36.2 5.7 63 50-120 104-167 (353)
170 cd02803 OYE_like_FMN_family Ol 63.3 34 0.00074 33.0 8.1 61 55-122 42-104 (327)
171 PF01212 Beta_elim_lyase: Beta 62.9 7 0.00015 37.4 3.2 24 91-114 143-166 (290)
172 PRK13347 coproporphyrinogen II 62.8 17 0.00036 37.2 6.1 63 50-120 153-216 (453)
173 COG2342 Predicted extracellula 62.5 1E+02 0.0022 29.2 10.4 123 45-201 29-151 (300)
174 PTZ00445 p36-lilke protein; Pr 62.2 19 0.00041 32.7 5.5 61 45-111 28-96 (219)
175 TIGR03217 4OH_2_O_val_ald 4-hy 61.7 1E+02 0.0022 30.1 11.0 39 175-214 143-182 (333)
176 PLN02803 beta-amylase 61.7 27 0.00058 36.0 7.0 68 41-121 99-172 (548)
177 TIGR00538 hemN oxygen-independ 60.9 18 0.00039 37.0 5.9 63 50-120 152-215 (455)
178 TIGR03471 HpnJ hopanoid biosyn 60.3 20 0.00044 36.7 6.2 27 91-117 321-347 (472)
179 PRK09249 coproporphyrinogen II 59.5 22 0.00047 36.3 6.2 63 50-120 152-215 (453)
180 PF07555 NAGidase: beta-N-acet 59.2 1E+02 0.0022 29.7 10.4 97 45-195 14-110 (306)
181 TIGR00542 hxl6Piso_put hexulos 59.2 20 0.00043 33.8 5.6 53 47-110 17-69 (279)
182 PRK09856 fructoselysine 3-epim 58.5 25 0.00053 32.9 6.1 51 48-111 15-65 (275)
183 cd02931 ER_like_FMN Enoate red 57.9 1.1E+02 0.0025 30.4 10.9 28 92-121 82-110 (382)
184 cd00958 DhnA Class I fructose- 57.9 14 0.00031 33.8 4.2 26 44-69 19-44 (235)
185 cd02929 TMADH_HD_FMN Trimethyl 57.0 1.4E+02 0.003 29.6 11.3 29 92-122 82-110 (370)
186 cd06549 GH18_trifunctional GH1 56.9 23 0.00051 33.9 5.7 47 169-215 84-136 (298)
187 TIGR01233 lacG 6-phospho-beta- 56.8 59 0.0013 33.4 8.8 63 44-113 51-113 (467)
188 cd07940 DRE_TIM_IPMS 2-isoprop 56.7 75 0.0016 29.8 9.0 40 174-214 142-182 (268)
189 PRK08446 coproporphyrinogen II 56.5 28 0.00061 34.2 6.3 63 50-120 99-162 (350)
190 PLN02389 biotin synthase 56.5 33 0.00072 34.1 6.8 28 90-117 210-237 (379)
191 PRK08599 coproporphyrinogen II 56.4 24 0.00052 35.0 5.8 32 89-120 132-164 (377)
192 cd08560 GDPD_EcGlpQ_like_1 Gly 56.1 14 0.00031 36.4 4.0 18 94-111 279-296 (356)
193 cd04724 Tryptophan_synthase_al 55.4 25 0.00053 32.6 5.4 24 93-116 116-139 (242)
194 PRK13511 6-phospho-beta-galact 55.3 65 0.0014 33.1 8.9 63 44-113 52-114 (469)
195 PRK10605 N-ethylmaleimide redu 55.2 1.3E+02 0.0029 29.6 10.8 29 92-122 78-106 (362)
196 TIGR01211 ELP3 histone acetylt 54.8 23 0.00049 36.9 5.4 64 49-120 206-269 (522)
197 TIGR01212 radical SAM protein, 54.6 89 0.0019 30.0 9.2 26 91-116 161-186 (302)
198 TIGR03581 EF_0839 conserved hy 54.3 27 0.00057 31.7 5.0 23 47-69 136-158 (236)
199 KOG2499 Beta-N-acetylhexosamin 53.8 73 0.0016 32.5 8.4 30 91-120 248-278 (542)
200 cd03174 DRE_TIM_metallolyase D 53.7 64 0.0014 29.9 8.0 40 174-214 145-185 (265)
201 COG1242 Predicted Fe-S oxidore 53.5 61 0.0013 30.7 7.4 53 92-197 167-219 (312)
202 TIGR01108 oadA oxaloacetate de 53.0 2.4E+02 0.0052 29.9 12.7 40 174-214 148-188 (582)
203 PRK07379 coproporphyrinogen II 52.8 30 0.00064 34.7 5.8 63 50-120 116-179 (400)
204 cd04733 OYE_like_2_FMN Old yel 52.6 87 0.0019 30.5 9.0 29 92-122 81-109 (338)
205 cd07939 DRE_TIM_NifV Streptomy 52.2 1E+02 0.0022 28.7 9.1 40 174-214 138-178 (259)
206 cd04734 OYE_like_3_FMN Old yel 52.1 1.8E+02 0.0039 28.4 11.1 68 47-122 34-104 (343)
207 PRK06294 coproporphyrinogen II 52.1 32 0.0007 34.0 5.9 64 49-120 103-167 (370)
208 PLN02801 beta-amylase 51.9 47 0.001 34.1 6.9 65 44-121 35-102 (517)
209 PRK09997 hydroxypyruvate isome 51.7 37 0.00079 31.6 6.0 21 48-68 17-37 (258)
210 cd02932 OYE_YqiM_FMN Old yello 50.9 82 0.0018 30.7 8.5 68 48-122 35-104 (336)
211 COG1809 (2R)-phospho-3-sulfola 50.8 38 0.00083 30.8 5.4 22 91-112 117-138 (258)
212 PLN02905 beta-amylase 50.5 50 0.0011 34.8 6.9 65 44-121 284-351 (702)
213 cd05014 SIS_Kpsf KpsF-like pro 50.4 30 0.00065 28.0 4.6 58 54-111 21-79 (128)
214 COG0826 Collagenase and relate 49.8 49 0.0011 32.5 6.6 51 50-111 17-67 (347)
215 cd01335 Radical_SAM Radical SA 49.5 27 0.00058 30.1 4.5 62 50-118 89-150 (204)
216 PRK09593 arb 6-phospho-beta-gl 49.3 1.1E+02 0.0024 31.6 9.4 64 44-113 71-134 (478)
217 PRK13384 delta-aminolevulinic 49.3 74 0.0016 30.6 7.4 121 44-213 59-181 (322)
218 TIGR03234 OH-pyruv-isom hydrox 48.9 50 0.0011 30.5 6.4 20 48-67 16-35 (254)
219 COG1902 NemA NADH:flavin oxido 48.6 2.8E+02 0.0061 27.4 11.9 28 92-121 82-109 (363)
220 cd00287 ribokinase_pfkB_like r 48.5 31 0.00066 30.0 4.7 53 51-116 42-94 (196)
221 PRK13125 trpA tryptophan synth 47.8 53 0.0011 30.4 6.3 25 91-115 114-138 (244)
222 PF15640 Tox-MPTase4: Metallop 47.4 19 0.00042 29.4 2.8 27 86-112 15-41 (132)
223 PLN02161 beta-amylase 47.4 63 0.0014 33.2 7.0 65 44-121 115-182 (531)
224 PRK09589 celA 6-phospho-beta-g 47.4 1.1E+02 0.0023 31.6 9.0 64 44-113 65-128 (476)
225 cd04735 OYE_like_4_FMN Old yel 47.3 1.1E+02 0.0023 30.2 8.6 29 92-122 77-105 (353)
226 TIGR00510 lipA lipoate synthas 47.2 94 0.002 29.9 8.0 75 22-111 205-279 (302)
227 PRK01278 argD acetylornithine 47.1 59 0.0013 32.2 7.0 59 44-119 164-222 (389)
228 cd02877 GH18_hevamine_XipI_cla 47.0 1.6E+02 0.0035 28.0 9.5 56 56-112 21-78 (280)
229 PRK05967 cystathionine beta-ly 46.5 26 0.00057 35.1 4.3 63 54-116 123-189 (395)
230 smart00733 Mterf Mitochondrial 46.5 15 0.00033 21.0 1.7 17 45-61 15-31 (31)
231 cd04824 eu_ALAD_PBGS_cysteine_ 46.4 78 0.0017 30.4 7.1 125 44-213 49-175 (320)
232 PLN00197 beta-amylase; Provisi 46.4 63 0.0014 33.5 6.8 65 44-121 125-192 (573)
233 PRK08114 cystathionine beta-ly 46.2 39 0.00085 33.9 5.4 84 24-115 98-188 (395)
234 TIGR00262 trpA tryptophan synt 46.1 65 0.0014 30.1 6.6 48 47-116 103-150 (256)
235 PF01791 DeoC: DeoC/LacD famil 45.8 19 0.00042 33.1 3.0 25 92-116 111-135 (236)
236 PLN02705 beta-amylase 45.7 60 0.0013 34.1 6.6 65 44-121 266-333 (681)
237 PRK05799 coproporphyrinogen II 45.6 46 0.001 32.9 5.9 63 50-120 100-163 (374)
238 TIGR03586 PseI pseudaminic aci 45.5 68 0.0015 31.2 6.8 118 38-218 9-139 (327)
239 PRK13523 NADPH dehydrogenase N 45.4 1.2E+02 0.0026 29.7 8.6 71 46-121 37-107 (337)
240 PRK09028 cystathionine beta-ly 45.0 28 0.00061 34.8 4.3 30 87-116 157-186 (394)
241 PRK14457 ribosomal RNA large s 45.0 86 0.0019 30.8 7.5 56 44-111 269-324 (345)
242 cd00019 AP2Ec AP endonuclease 44.5 67 0.0015 30.1 6.6 52 48-111 12-64 (279)
243 PF00704 Glyco_hydro_18: Glyco 44.0 41 0.00088 32.5 5.2 45 170-214 96-150 (343)
244 cd00945 Aldolase_Class_I Class 44.0 56 0.0012 28.5 5.7 60 44-118 63-125 (201)
245 cd04795 SIS SIS domain. SIS (S 43.8 25 0.00055 26.1 3.0 57 55-111 20-79 (87)
246 cd04747 OYE_like_5_FMN Old yel 43.8 3.2E+02 0.007 27.0 11.4 29 92-122 77-105 (361)
247 smart00729 Elp3 Elongator prot 43.6 56 0.0012 28.4 5.7 29 90-118 133-162 (216)
248 PRK05939 hypothetical protein; 43.5 32 0.00069 34.5 4.4 84 24-115 83-170 (397)
249 PRK14455 ribosomal RNA large s 43.3 76 0.0017 31.3 6.9 55 45-111 277-331 (356)
250 COG1306 Uncharacterized conser 43.3 77 0.0017 30.3 6.4 136 45-199 76-219 (400)
251 PLN02814 beta-glucosidase 43.2 96 0.0021 32.2 7.9 63 44-113 75-137 (504)
252 PRK06582 coproporphyrinogen II 43.2 54 0.0012 32.8 5.9 65 49-121 111-175 (390)
253 TIGR02666 moaA molybdenum cofa 43.1 66 0.0014 31.2 6.5 59 50-115 103-162 (334)
254 PRK12581 oxaloacetate decarbox 42.6 1.4E+02 0.003 30.6 8.8 40 174-214 162-202 (468)
255 COG1874 LacA Beta-galactosidas 42.6 32 0.0007 36.8 4.3 59 46-115 30-90 (673)
256 PRK12595 bifunctional 3-deoxy- 42.1 97 0.0021 30.6 7.4 60 44-113 130-189 (360)
257 cd07945 DRE_TIM_CMS Leptospira 41.9 2.1E+02 0.0045 27.1 9.4 39 175-214 147-186 (280)
258 PRK09057 coproporphyrinogen II 41.8 46 0.001 33.1 5.2 63 50-120 105-167 (380)
259 PRK13209 L-xylulose 5-phosphat 41.6 57 0.0012 30.6 5.6 53 48-111 23-75 (283)
260 KOG2730 Methylase [General fun 41.6 26 0.00057 32.0 3.0 43 43-86 150-192 (263)
261 KOG0259 Tyrosine aminotransfer 41.5 60 0.0013 32.1 5.6 79 43-122 134-248 (447)
262 TIGR02026 BchE magnesium-proto 41.4 51 0.0011 34.1 5.6 60 50-117 288-347 (497)
263 TIGR03551 F420_cofH 7,8-dideme 41.4 34 0.00073 33.5 4.1 64 49-118 141-204 (343)
264 COG3661 AguA Alpha-glucuronida 41.4 87 0.0019 31.6 6.7 63 44-115 181-243 (684)
265 PRK04302 triosephosphate isome 40.8 56 0.0012 29.8 5.2 44 52-113 78-121 (223)
266 PRK12858 tagatose 1,6-diphosph 40.7 44 0.00095 32.7 4.7 54 52-115 112-165 (340)
267 PF01261 AP_endonuc_2: Xylose 40.5 11 0.00023 33.3 0.5 45 52-111 1-45 (213)
268 PRK05692 hydroxymethylglutaryl 40.5 2.2E+02 0.0047 27.1 9.4 40 174-214 154-194 (287)
269 PRK13561 putative diguanylate 40.4 44 0.00096 35.7 5.2 72 44-116 532-614 (651)
270 PF00682 HMGL-like: HMGL-like 40.3 1.6E+02 0.0035 26.7 8.3 40 174-214 136-176 (237)
271 COG1891 Uncharacterized protei 40.1 14 0.00029 32.3 0.9 22 91-112 165-186 (235)
272 cd00384 ALAD_PBGS Porphobilino 39.9 1.4E+02 0.0031 28.7 7.7 121 44-213 49-171 (314)
273 cd04740 DHOD_1B_like Dihydroor 39.5 1.7E+02 0.0038 27.7 8.7 72 27-114 89-162 (296)
274 cd06548 GH18_chitinase The GH1 39.5 37 0.0008 32.8 4.0 30 169-198 105-134 (322)
275 cd00615 Orn_deC_like Ornithine 39.5 21 0.00046 33.9 2.3 26 89-114 166-191 (294)
276 PRK10060 RNase II stability mo 39.2 34 0.00074 36.8 4.1 72 44-116 539-621 (663)
277 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.2 47 0.001 26.7 4.1 58 53-111 19-78 (126)
278 PRK14453 chloramphenicol/florf 38.9 1.2E+02 0.0026 29.8 7.5 59 44-111 262-324 (347)
279 PRK12928 lipoyl synthase; Prov 38.9 1.5E+02 0.0032 28.3 8.0 73 24-111 204-276 (290)
280 PRK00164 moaA molybdenum cofac 38.9 82 0.0018 30.5 6.4 59 49-115 108-167 (331)
281 TIGR02006 IscS cysteine desulf 38.9 71 0.0015 31.8 6.1 70 45-115 102-181 (402)
282 cd02933 OYE_like_FMN Old yello 38.8 1.6E+02 0.0034 28.8 8.3 29 92-122 76-104 (338)
283 TIGR01324 cysta_beta_ly_B cyst 38.8 42 0.00091 33.4 4.4 32 85-116 144-175 (377)
284 PRK13361 molybdenum cofactor b 38.8 74 0.0016 30.9 6.1 59 49-115 104-163 (329)
285 COG2873 MET17 O-acetylhomoseri 38.8 43 0.00093 33.1 4.2 70 47-116 113-187 (426)
286 cd03409 Chelatase_Class_II Cla 38.8 29 0.00063 26.8 2.7 27 47-73 46-72 (101)
287 TIGR01162 purE phosphoribosyla 38.7 72 0.0016 27.4 5.1 49 44-111 10-58 (156)
288 cd02876 GH18_SI-CLP Stabilin-1 38.7 37 0.0008 32.7 3.9 46 169-214 88-144 (318)
289 COG1082 IolE Sugar phosphate i 38.5 62 0.0013 30.0 5.3 49 46-111 15-63 (274)
290 TIGR03699 mena_SCO4550 menaqui 38.3 40 0.00086 32.9 4.1 31 87-117 175-205 (340)
291 cd07938 DRE_TIM_HMGL 3-hydroxy 38.1 1.7E+02 0.0037 27.6 8.2 40 174-214 148-188 (274)
292 PLN02849 beta-glucosidase 38.0 1.4E+02 0.0031 30.9 8.2 63 44-113 77-139 (503)
293 COG0134 TrpC Indole-3-glycerol 38.0 41 0.00088 31.4 3.8 22 92-113 142-163 (254)
294 COG2200 Rtn c-di-GMP phosphodi 37.8 53 0.0012 30.6 4.7 80 29-116 121-216 (256)
295 PRK05093 argD bifunctional N-s 37.8 97 0.0021 30.9 6.9 60 44-120 173-232 (403)
296 cd02879 GH18_plant_chitinase_c 37.5 39 0.00084 32.4 3.8 46 169-214 88-140 (299)
297 TIGR03127 RuMP_HxlB 6-phospho 37.3 70 0.0015 27.7 5.2 55 53-111 50-104 (179)
298 PRK11145 pflA pyruvate formate 36.9 74 0.0016 29.3 5.5 63 47-110 180-245 (246)
299 PF09196 DUF1953: Domain of un 36.9 74 0.0016 22.1 3.9 44 368-411 2-51 (66)
300 PRK09058 coproporphyrinogen II 36.8 77 0.0017 32.3 6.0 63 50-120 164-227 (449)
301 cd07941 DRE_TIM_LeuA3 Desulfob 36.8 2.2E+02 0.0049 26.7 8.8 40 174-214 150-190 (273)
302 PLN02591 tryptophan synthase 36.5 92 0.002 29.1 6.0 43 47-111 94-136 (250)
303 cd07948 DRE_TIM_HCS Saccharomy 36.4 2.6E+02 0.0057 26.2 9.1 39 175-214 141-180 (262)
304 smart00636 Glyco_18 Glycosyl h 36.3 44 0.00095 32.3 4.0 46 169-214 87-140 (334)
305 PRK13398 3-deoxy-7-phosphohept 36.3 1.3E+02 0.0029 28.2 7.1 59 44-113 39-98 (266)
306 TIGR00217 malQ 4-alpha-glucano 36.2 70 0.0015 33.3 5.6 37 188-224 303-362 (513)
307 TIGR03569 NeuB_NnaB N-acetylne 36.0 1.1E+02 0.0023 29.9 6.5 117 39-218 9-138 (329)
308 PF02581 TMP-TENI: Thiamine mo 35.8 66 0.0014 28.1 4.7 47 52-111 108-154 (180)
309 PLN02998 beta-glucosidase 35.6 1.3E+02 0.0027 31.3 7.3 63 44-113 80-142 (497)
310 PF00834 Ribul_P_3_epim: Ribul 35.4 76 0.0017 28.5 5.1 77 34-116 85-176 (201)
311 PRK11059 regulatory protein Cs 35.4 47 0.001 35.5 4.4 86 28-116 517-613 (640)
312 PRK14040 oxaloacetate decarbox 35.2 5.8E+02 0.013 27.2 12.5 40 174-214 154-194 (593)
313 smart00052 EAL Putative diguan 35.1 29 0.00063 31.3 2.4 72 44-116 131-213 (241)
314 cd00609 AAT_like Aspartate ami 35.1 39 0.00085 32.3 3.5 27 91-117 150-176 (350)
315 PRK07050 cystathionine beta-ly 35.0 49 0.0011 33.1 4.2 30 88-117 162-191 (394)
316 PF03711 OKR_DC_1_C: Orn/Lys/A 35.0 29 0.00064 29.1 2.2 41 324-364 81-123 (136)
317 cd03413 CbiK_C Anaerobic cobal 35.0 33 0.00072 27.2 2.4 52 48-110 44-96 (103)
318 PF00232 Glyco_hydro_1: Glycos 34.9 48 0.001 33.9 4.2 57 44-113 56-119 (455)
319 cd06543 GH18_PF-ChiA-like PF-C 34.9 1.6E+02 0.0034 28.2 7.4 94 53-200 19-115 (294)
320 PLN02509 cystathionine beta-ly 34.8 52 0.0011 33.7 4.4 31 85-115 226-256 (464)
321 PRK09989 hypothetical protein; 34.8 90 0.0019 28.9 5.7 43 47-111 16-58 (258)
322 COG1168 MalY Bifunctional PLP- 34.7 43 0.00092 33.1 3.5 70 43-113 91-198 (388)
323 PRK11194 ribosomal RNA large s 34.6 1.5E+02 0.0033 29.4 7.4 56 44-111 276-331 (372)
324 COG1105 FruK Fructose-1-phosph 34.6 45 0.00097 32.2 3.6 23 91-113 144-166 (310)
325 cd05017 SIS_PGI_PMI_1 The memb 34.4 42 0.00091 27.0 3.0 55 54-111 20-75 (119)
326 TIGR01814 kynureninase kynuren 34.3 33 0.00071 34.3 2.8 31 84-114 179-209 (406)
327 TIGR01140 L_thr_O3P_dcar L-thr 34.2 41 0.00088 32.5 3.4 28 91-118 143-170 (330)
328 PLN02746 hydroxymethylglutaryl 34.0 2.9E+02 0.0062 27.2 9.2 40 174-214 196-236 (347)
329 cd06452 SepCysS Sep-tRNA:Cys-t 34.0 34 0.00074 33.4 2.9 31 86-116 149-179 (361)
330 PRK08898 coproporphyrinogen II 33.6 84 0.0018 31.4 5.6 63 50-120 123-185 (394)
331 cd06454 KBL_like KBL_like; thi 33.5 37 0.0008 32.7 3.0 28 88-115 144-171 (349)
332 cd00614 CGS_like CGS_like: Cys 33.4 37 0.00081 33.5 3.0 28 88-115 137-164 (369)
333 PRK09331 Sep-tRNA:Cys-tRNA syn 33.3 43 0.00093 33.2 3.5 32 85-116 167-198 (387)
334 cd02872 GH18_chitolectin_chito 33.3 48 0.001 32.5 3.8 46 169-214 92-148 (362)
335 cd04823 ALAD_PBGS_aspartate_ri 33.2 4.6E+02 0.0099 25.4 11.8 118 44-213 52-176 (320)
336 PRK09856 fructoselysine 3-epim 33.2 1.7E+02 0.0037 27.1 7.5 61 44-113 88-149 (275)
337 PRK12331 oxaloacetate decarbox 33.2 5.5E+02 0.012 26.3 12.5 40 174-214 153-193 (448)
338 TIGR00423 radical SAM domain p 33.1 66 0.0014 30.9 4.6 32 87-118 139-170 (309)
339 PRK08247 cystathionine gamma-s 33.0 59 0.0013 32.0 4.4 27 89-115 149-175 (366)
340 COG3345 GalA Alpha-galactosida 33.0 1.5E+02 0.0033 31.0 7.1 95 23-120 287-382 (687)
341 cd01299 Met_dep_hydrolase_A Me 32.9 1.8E+02 0.0039 28.0 7.8 61 44-111 118-178 (342)
342 PRK14581 hmsF outer membrane N 32.8 5.6E+02 0.012 27.7 11.7 131 45-196 333-465 (672)
343 TIGR03470 HpnH hopanoid biosyn 32.8 1.1E+02 0.0023 29.7 6.0 52 44-104 176-227 (318)
344 PRK00278 trpC indole-3-glycero 32.8 54 0.0012 30.7 3.8 23 91-113 145-167 (260)
345 PRK13111 trpA tryptophan synth 32.7 1.1E+02 0.0024 28.6 5.9 48 47-116 105-152 (258)
346 PRK11829 biofilm formation reg 32.7 48 0.001 35.4 3.9 73 43-116 536-619 (660)
347 PF13407 Peripla_BP_4: Peripla 32.6 1E+02 0.0022 28.0 5.7 48 42-111 38-85 (257)
348 PRK07269 cystathionine gamma-s 32.6 40 0.00088 33.3 3.1 27 89-115 149-175 (364)
349 PF08533 Glyco_hydro_42C: Beta 32.5 99 0.0021 21.4 4.3 34 383-416 11-58 (58)
350 cd08559 GDPD_periplasmic_GlpQ_ 32.0 66 0.0014 30.7 4.4 16 96-111 246-261 (296)
351 TIGR00676 fadh2 5,10-methylene 32.0 1.6E+02 0.0034 27.8 6.9 65 45-111 14-91 (272)
352 PRK13238 tnaA tryptophanase/L- 31.8 61 0.0013 33.2 4.3 23 91-113 196-218 (460)
353 TIGR02660 nifV_homocitr homoci 31.8 2.9E+02 0.0062 27.3 9.0 39 174-213 141-180 (365)
354 PLN02651 cysteine desulfurase 31.8 42 0.00091 32.9 3.1 67 48-115 101-177 (364)
355 cd03412 CbiK_N Anaerobic cobal 31.5 67 0.0015 26.4 3.8 59 45-104 55-125 (127)
356 PRK05968 hypothetical protein; 31.2 65 0.0014 32.1 4.4 85 24-115 99-186 (389)
357 cd05013 SIS_RpiR RpiR-like pro 31.1 55 0.0012 26.4 3.3 65 47-111 26-92 (139)
358 TIGR00666 PBP4 D-alanyl-D-alan 30.9 94 0.002 30.5 5.3 75 47-122 21-100 (345)
359 cd01494 AAT_I Aspartate aminot 30.8 42 0.0009 28.0 2.6 30 90-119 106-135 (170)
360 COG0436 Aspartate/tyrosine/aro 30.7 56 0.0012 32.7 3.8 32 91-122 181-212 (393)
361 PF10096 DUF2334: Uncharacteri 30.7 2.2E+02 0.0049 26.3 7.6 67 38-113 8-75 (243)
362 PRK07259 dihydroorotate dehydr 30.6 2.9E+02 0.0063 26.3 8.6 72 27-114 91-165 (301)
363 PRK09283 delta-aminolevulinic 30.6 2.2E+02 0.0049 27.5 7.5 121 44-213 57-179 (323)
364 COG1533 SplB DNA repair photol 30.5 1.2E+02 0.0026 29.1 5.8 56 45-118 168-224 (297)
365 cd02878 GH18_zymocin_alpha Zym 30.5 57 0.0012 31.9 3.8 46 170-215 88-150 (345)
366 PF01276 OKR_DC_1: Orn/Lys/Arg 30.5 18 0.0004 36.4 0.3 27 87-113 178-204 (417)
367 PF09445 Methyltransf_15: RNA 30.4 90 0.0019 27.1 4.5 65 43-113 55-119 (163)
368 PRK08573 phosphomethylpyrimidi 30.4 80 0.0017 32.2 4.9 77 44-120 15-111 (448)
369 PF04914 DltD_C: DltD C-termin 30.3 59 0.0013 27.1 3.2 23 93-115 36-58 (130)
370 cd02930 DCR_FMN 2,4-dienoyl-Co 30.1 4.4E+02 0.0096 25.7 10.0 71 47-122 34-104 (353)
371 COG0159 TrpA Tryptophan syntha 30.1 3.2E+02 0.0069 25.8 8.3 69 42-111 27-99 (265)
372 PRK07812 O-acetylhomoserine am 30.1 44 0.00096 33.9 3.0 83 24-115 105-194 (436)
373 TIGR02539 SepCysS Sep-tRNA:Cys 29.9 49 0.0011 32.5 3.2 32 85-116 155-186 (370)
374 PF01261 AP_endonuc_2: Xylose 29.9 1.6E+02 0.0035 25.5 6.4 56 45-113 70-132 (213)
375 PF12996 DUF3880: DUF based on 29.9 53 0.0011 24.5 2.7 24 49-72 27-50 (79)
376 cd03416 CbiX_SirB_N Sirohydroc 29.7 42 0.00092 26.0 2.2 29 47-75 45-73 (101)
377 PRK03170 dihydrodipicolinate s 29.6 1.7E+02 0.0037 27.7 6.8 35 29-69 72-106 (292)
378 PLN02428 lipoic acid synthase 29.6 1.7E+02 0.0036 28.8 6.7 60 44-111 260-319 (349)
379 cd00617 Tnase_like Tryptophana 29.6 59 0.0013 33.0 3.7 23 92-114 172-194 (431)
380 PRK08960 hypothetical protein; 29.5 61 0.0013 32.0 3.8 27 92-118 184-210 (387)
381 PRK12677 xylose isomerase; Pro 29.4 1.4E+02 0.003 29.8 6.3 54 47-111 32-85 (384)
382 cd03320 OSBS o-Succinylbenzoat 29.3 1.5E+02 0.0031 27.7 6.2 68 44-112 139-233 (263)
383 PRK07811 cystathionine gamma-s 29.3 48 0.001 33.0 3.1 29 88-116 158-186 (388)
384 cd06502 TA_like Low-specificit 29.2 52 0.0011 31.5 3.2 24 91-114 144-167 (338)
385 PRK11858 aksA trans-homoaconit 29.2 3.4E+02 0.0075 26.9 9.1 39 174-213 144-183 (378)
386 PRK07568 aspartate aminotransf 29.2 58 0.0013 32.2 3.7 29 91-119 180-208 (397)
387 TIGR02127 pyrF_sub2 orotidine 29.1 61 0.0013 30.4 3.5 30 87-116 65-96 (261)
388 PRK14462 ribosomal RNA large s 28.9 1.9E+02 0.0042 28.5 7.1 56 44-111 277-332 (356)
389 cd05710 SIS_1 A subgroup of th 28.9 61 0.0013 26.2 3.1 25 87-111 55-79 (120)
390 PLN00145 tyrosine/nicotianamin 28.8 68 0.0015 32.4 4.1 29 92-120 209-237 (430)
391 COG3684 LacD Tagatose-1,6-bisp 28.8 90 0.002 29.2 4.3 64 38-115 101-169 (306)
392 TIGR01329 cysta_beta_ly_E cyst 28.6 49 0.0011 32.8 3.0 84 24-115 82-170 (378)
393 PRK14012 cysteine desulfurase; 28.4 68 0.0015 31.9 4.0 82 25-115 92-183 (404)
394 cd03414 CbiX_SirB_C Sirohydroc 28.4 51 0.0011 26.4 2.5 28 48-75 47-74 (117)
395 PRK05301 pyrroloquinoline quin 28.3 86 0.0019 31.0 4.6 28 90-117 138-165 (378)
396 PRK00923 sirohydrochlorin coba 28.2 87 0.0019 25.5 4.0 29 47-75 47-75 (126)
397 PF00266 Aminotran_5: Aminotra 28.2 34 0.00075 33.5 1.8 84 24-115 85-178 (371)
398 PF04343 DUF488: Protein of un 28.0 1E+02 0.0022 25.0 4.3 31 95-126 2-32 (122)
399 TIGR02090 LEU1_arch isopropylm 27.9 4.1E+02 0.009 26.2 9.3 40 174-214 140-180 (363)
400 COG3449 DNA gyrase inhibitor [ 27.8 2.6E+02 0.0057 24.0 6.7 87 327-415 7-97 (154)
401 COG0113 HemB Delta-aminolevuli 27.7 2.3E+02 0.0051 27.2 6.9 118 44-214 59-185 (330)
402 PLN00175 aminotransferase fami 27.7 69 0.0015 32.1 3.9 29 92-120 206-234 (413)
403 cd00954 NAL N-Acetylneuraminic 27.7 2E+02 0.0043 27.2 6.9 51 44-111 81-133 (288)
404 PRK07324 transaminase; Validat 27.5 78 0.0017 31.2 4.2 28 91-118 171-198 (373)
405 cd05005 SIS_PHI Hexulose-6-pho 27.5 1.4E+02 0.003 25.9 5.4 54 54-111 54-107 (179)
406 PRK14467 ribosomal RNA large s 27.3 2.3E+02 0.005 27.8 7.3 57 44-111 266-323 (348)
407 TIGR01325 O_suc_HS_sulf O-succ 27.1 53 0.0011 32.6 2.9 31 86-116 149-179 (380)
408 PF15614 WHIM3: WSTF, HB1, Itc 27.1 43 0.00093 22.4 1.5 20 89-108 4-24 (46)
409 PRK05958 8-amino-7-oxononanoat 27.1 52 0.0011 32.2 2.8 28 88-115 180-207 (385)
410 PRK14041 oxaloacetate decarbox 27.0 7.1E+02 0.015 25.6 12.1 40 174-214 152-192 (467)
411 PF00490 ALAD: Delta-aminolevu 27.0 4.7E+02 0.01 25.4 8.9 125 44-213 55-181 (324)
412 PRK00125 pyrF orotidine 5'-pho 27.0 66 0.0014 30.6 3.3 30 87-116 65-96 (278)
413 cd03322 rpsA The starvation se 26.9 2.2E+02 0.0048 27.9 7.3 84 21-111 157-270 (361)
414 TIGR01265 tyr_nico_aTase tyros 26.8 79 0.0017 31.4 4.1 28 92-119 188-215 (403)
415 TIGR03700 mena_SCO4494 putativ 26.7 99 0.0021 30.4 4.7 34 84-117 179-212 (351)
416 cd00564 TMP_TenI Thiamine mono 26.7 2E+02 0.0044 24.8 6.4 51 50-113 106-157 (196)
417 TIGR03392 FeS_syn_CsdA cystein 26.6 52 0.0011 32.6 2.7 62 54-115 126-196 (398)
418 PF01380 SIS: SIS domain SIS d 26.6 73 0.0016 25.6 3.2 69 43-111 14-85 (131)
419 PRK08776 cystathionine gamma-s 26.5 58 0.0013 32.7 3.1 30 87-116 156-185 (405)
420 TIGR03235 DNA_S_dndA cysteine 26.5 58 0.0013 31.6 3.0 72 47-118 100-182 (353)
421 PRK13957 indole-3-glycerol-pho 26.4 79 0.0017 29.4 3.7 23 91-113 136-158 (247)
422 cd02873 GH18_IDGF The IDGF's ( 26.4 75 0.0016 32.0 3.8 28 169-196 101-128 (413)
423 TIGR03550 F420_cofG 7,8-dideme 26.2 1E+02 0.0023 29.8 4.7 61 51-117 112-173 (322)
424 PRK07777 aminotransferase; Val 26.2 74 0.0016 31.4 3.8 28 92-119 178-205 (387)
425 PRK06108 aspartate aminotransf 26.2 66 0.0014 31.5 3.4 30 91-120 176-205 (382)
426 PF01565 FAD_binding_4: FAD bi 26.1 86 0.0019 25.7 3.6 22 90-111 8-29 (139)
427 PRK11359 cyclic-di-GMP phospho 26.1 53 0.0011 35.8 2.9 87 28-117 662-759 (799)
428 cd04722 TIM_phosphate_binding 26.1 3.3E+02 0.0072 23.1 7.7 66 27-116 57-124 (200)
429 TIGR02351 thiH thiazole biosyn 25.9 1E+02 0.0022 30.5 4.7 74 43-116 134-225 (366)
430 cd01948 EAL EAL domain. This d 25.9 1.1E+02 0.0024 27.4 4.6 86 29-117 117-213 (240)
431 TIGR01437 selA_rel uncharacter 25.9 51 0.0011 32.5 2.5 27 89-115 162-188 (363)
432 PRK05926 hypothetical protein; 25.9 78 0.0017 31.4 3.8 36 85-120 199-234 (370)
433 PRK13237 tyrosine phenol-lyase 25.8 74 0.0016 32.5 3.6 22 92-113 197-218 (460)
434 PRK09082 methionine aminotrans 25.8 63 0.0014 31.9 3.2 29 91-119 181-209 (386)
435 COG0821 gcpE 1-hydroxy-2-methy 25.8 2.2E+02 0.0049 27.7 6.5 84 27-112 19-129 (361)
436 KOG2584 Dihydroorotase and rel 25.7 70 0.0015 32.2 3.3 99 91-212 84-186 (522)
437 TIGR01976 am_tr_V_VC1184 cyste 25.7 58 0.0012 32.2 2.9 32 83-114 163-194 (397)
438 TIGR01232 lacD tagatose 1,6-di 25.5 93 0.002 30.1 4.0 63 40-116 98-166 (325)
439 PRK02227 hypothetical protein; 25.3 1.4E+02 0.0031 27.5 5.1 51 50-111 135-185 (238)
440 COG3469 Chitinase [Carbohydrat 25.1 2.9E+02 0.0064 25.9 6.9 33 81-113 73-105 (332)
441 cd06544 GH18_narbonin Narbonin 25.1 1.3E+02 0.0028 28.2 4.9 44 172-215 96-144 (253)
442 PRK05764 aspartate aminotransf 25.0 78 0.0017 31.2 3.7 26 92-117 183-208 (393)
443 PF00155 Aminotran_1_2: Aminot 25.0 1.3E+02 0.0028 29.1 5.2 64 44-121 131-196 (363)
444 PRK09064 5-aminolevulinate syn 25.0 1.2E+02 0.0025 30.2 5.0 27 90-116 192-218 (407)
445 PRK07671 cystathionine beta-ly 24.9 65 0.0014 31.9 3.1 30 87-116 145-174 (377)
446 TIGR00474 selA seryl-tRNA(sec) 24.9 51 0.0011 33.7 2.3 23 91-113 230-252 (454)
447 PF14307 Glyco_tran_WbsX: Glyc 24.8 78 0.0017 31.0 3.6 43 166-212 52-98 (345)
448 TIGR02109 PQQ_syn_pqqE coenzym 24.8 1.3E+02 0.0027 29.5 5.1 28 90-117 129-156 (358)
449 PLN02656 tyrosine transaminase 24.8 74 0.0016 31.8 3.5 29 92-120 188-216 (409)
450 PF12905 Glyco_hydro_101: Endo 24.7 43 0.00094 33.4 1.7 35 79-113 81-115 (425)
451 PRK14335 (dimethylallyl)adenos 24.7 1.7E+02 0.0036 30.0 6.1 31 91-121 291-323 (455)
452 PRK08056 threonine-phosphate d 24.7 88 0.0019 30.5 4.0 28 92-119 161-188 (356)
453 PRK08445 hypothetical protein; 24.7 1E+02 0.0022 30.4 4.3 34 85-118 174-207 (348)
454 PRK05957 aspartate aminotransf 24.7 79 0.0017 31.3 3.6 29 91-119 178-206 (389)
455 TIGR00858 bioF 8-amino-7-oxono 24.6 54 0.0012 31.6 2.4 28 88-115 158-185 (360)
456 TIGR01822 2am3keto_CoA 2-amino 24.6 67 0.0015 31.7 3.1 28 88-115 182-209 (393)
457 PLN02692 alpha-galactosidase 24.6 1.3E+02 0.0027 30.4 4.9 67 325-394 283-355 (412)
458 cd06596 GH31_CPE1046 CPE1046 i 24.5 1.4E+02 0.0031 28.0 4.9 49 44-109 43-91 (261)
459 PLN02721 threonine aldolase 24.5 81 0.0017 30.4 3.6 24 92-115 157-180 (353)
460 COG1441 MenC O-succinylbenzoat 24.5 75 0.0016 29.1 3.0 23 89-111 240-262 (321)
461 COG2876 AroA 3-deoxy-D-arabino 24.4 2.7E+02 0.0059 26.2 6.6 62 43-114 56-117 (286)
462 PRK06348 aspartate aminotransf 24.4 82 0.0018 31.1 3.7 30 91-120 180-209 (384)
463 cd01171 YXKO-related B.subtili 24.4 60 0.0013 30.0 2.6 34 81-114 79-112 (254)
464 PRK08133 O-succinylhomoserine 24.4 66 0.0014 32.0 3.0 31 86-116 156-186 (390)
465 TIGR00674 dapA dihydrodipicoli 24.4 2.5E+02 0.0054 26.5 6.9 26 44-69 78-103 (285)
466 PRK07810 O-succinylhomoserine 24.3 67 0.0014 32.2 3.0 32 85-116 164-195 (403)
467 COG0269 SgbH 3-hexulose-6-phos 24.2 1.2E+02 0.0026 27.6 4.3 151 44-223 14-195 (217)
468 cd06450 DOPA_deC_like DOPA dec 24.2 59 0.0013 31.3 2.6 32 86-117 158-189 (345)
469 cd07491 Peptidases_S8_7 Peptid 24.2 4.2E+02 0.009 24.4 8.2 68 31-111 70-141 (247)
470 KOG4175 Tryptophan synthase al 24.2 1.5E+02 0.0033 26.6 4.7 62 44-113 78-155 (268)
471 PRK08064 cystathionine beta-ly 24.1 72 0.0016 31.8 3.2 31 85-115 147-177 (390)
472 cd00378 SHMT Serine-glycine hy 24.1 62 0.0013 32.0 2.8 28 87-114 170-197 (402)
473 PRK06225 aspartate aminotransf 24.1 74 0.0016 31.3 3.3 25 92-116 176-200 (380)
474 PRK06939 2-amino-3-ketobutyrat 24.1 65 0.0014 31.7 2.9 30 87-116 185-214 (397)
475 PTZ00413 lipoate synthase; Pro 24.0 2.8E+02 0.006 27.8 7.0 60 44-111 308-367 (398)
476 PRK07683 aminotransferase A; V 24.0 82 0.0018 31.2 3.6 28 91-118 179-206 (387)
477 PTZ00376 aspartate aminotransf 24.0 89 0.0019 31.1 3.9 30 91-120 194-223 (404)
478 PRK13578 ornithine decarboxyla 24.0 1.6E+02 0.0034 32.1 5.8 43 320-364 652-695 (720)
479 COG1448 TyrB Aspartate/tyrosin 23.8 1.9E+02 0.0041 28.8 5.8 63 44-121 158-220 (396)
480 PTZ00125 ornithine aminotransf 23.8 2.4E+02 0.0052 27.8 6.9 61 44-120 166-226 (400)
481 TIGR01328 met_gam_lyase methio 23.8 72 0.0016 31.8 3.2 30 87-116 155-184 (391)
482 cd03315 MLE_like Muconate lact 23.8 1.3E+02 0.0028 28.0 4.8 67 44-111 141-236 (265)
483 PRK14340 (dimethylallyl)adenos 23.7 1.7E+02 0.0036 29.9 5.8 36 85-121 276-313 (445)
484 PRK08134 O-acetylhomoserine am 23.7 69 0.0015 32.5 3.0 82 24-115 100-188 (433)
485 TIGR02326 transamin_PhnW 2-ami 23.7 67 0.0014 31.3 2.9 31 84-114 137-167 (363)
486 PRK07503 methionine gamma-lyas 23.6 68 0.0015 32.1 3.0 30 87-116 161-190 (403)
487 TIGR03301 PhnW-AepZ 2-aminoeth 23.6 98 0.0021 29.7 4.0 31 85-115 134-164 (355)
488 cd08577 PI-PLCc_GDPD_SF_unchar 23.6 87 0.0019 28.8 3.4 20 92-111 184-203 (228)
489 PF00218 IGPS: Indole-3-glycer 23.6 95 0.0021 29.1 3.7 22 92-113 144-165 (254)
490 TIGR00106 uncharacterized prot 23.5 1.2E+02 0.0025 23.8 3.6 55 48-119 21-80 (97)
491 PLN02187 rooty/superroot1 23.4 89 0.0019 31.9 3.8 28 92-119 223-250 (462)
492 PLN02460 indole-3-glycerol-pho 23.3 99 0.0021 30.2 3.8 22 92-113 216-237 (338)
493 PLN02808 alpha-galactosidase 23.3 1.5E+02 0.0032 29.7 5.1 68 325-395 259-332 (386)
494 PRK11658 UDP-4-amino-4-deoxy-L 23.3 59 0.0013 32.2 2.4 30 88-117 130-159 (379)
495 TIGR02618 tyr_phenol_ly tyrosi 23.3 90 0.0019 31.8 3.7 22 92-113 190-211 (450)
496 TIGR01264 tyr_amTase_E tyrosin 23.2 90 0.002 31.0 3.8 29 92-120 187-215 (401)
497 TIGR00587 nfo apurinic endonuc 23.2 2.6E+02 0.0056 26.2 6.7 70 44-113 86-178 (274)
498 cd06453 SufS_like Cysteine des 23.1 67 0.0014 31.4 2.8 30 86-115 149-178 (373)
499 PRK08175 aminotransferase; Val 23.1 86 0.0019 31.1 3.6 28 91-118 182-209 (395)
500 PTZ00242 protein tyrosine phos 23.1 2.5E+02 0.0055 24.2 6.0 64 48-111 29-103 (166)
No 1
>PLN02361 alpha-amylase
Probab=100.00 E-value=9.4e-83 Score=624.27 Aligned_cols=393 Identities=87% Similarity=1.514 Sum_probs=351.0
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 103 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH 103 (416)
...++.||+|+|+|++++..+|++|++|||||++||||+|||+|++++.++|||+|.|||+++|+|||++||++||++||
T Consensus 7 ~~~~~~v~lQ~F~W~~~~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 7 IRNGREILLQAFNWESHKHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMK 86 (401)
T ss_pred hcCCCcEEEEEEeccCCccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHH
Confidence 34578999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHH
Q 014892 104 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRW 183 (416)
Q Consensus 104 ~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~ 183 (416)
++||+||+|+|+||++...++..+.|..|.+.+.+|++..++....+..+...+..+.++||||++||+||++++++++|
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~w 166 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIW 166 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHH
Confidence 99999999999999987766677777777654556776554433333333345566789999999999999999999998
Q ss_pred HHHhcCCCeEEecccCCCcHHHHHHHHHhcCCceEEEcccCCCCCC--CCCCCCccchhhHhHhhhhccCCCcccccCch
Q 014892 184 LRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYN--SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFT 261 (416)
Q Consensus 184 w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~vgE~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~ 261 (416)
|++++||||||+|+|++++.+||++++++++|.|+|||+|++..+. ++.++|.++..++.+..|++.+++..++|||+
T Consensus 167 l~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~~~~~fDF~ 246 (401)
T PLN02361 167 LRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGGLSAAFDFT 246 (401)
T ss_pred HHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCCcceeecHH
Confidence 8877999999999999999999999999999999999999875442 45678887777888999999777788999999
Q ss_pred hhHHHHHHhcCchhhhhhhcCCCCCccccccCcceecccCCCCCCCCCCCCCChhhHHHHHHHHhcCCCeeEEecCCcCC
Q 014892 262 TKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD 341 (416)
Q Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~~~~~~~~~~~a~a~llt~pGiP~Iy~G~E~g 341 (416)
++..+.+++.++.+++.+..++.+.+.+..|.++|+||+|||++|+++.++.+..+.++|+|++||.||+||||||+.++
T Consensus 247 l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~Vyyg~~~~ 326 (401)
T PLN02361 247 TKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPTVFYDHFYD 326 (401)
T ss_pred HHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCeEeeccccC
Confidence 99999999976677887777665667778899999999999999999988877889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCCCCcEEeeeCCceEEeeC
Q 014892 342 WGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 416 (416)
Q Consensus 342 w~~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R~~~~lvvinn~~~~~~~~~~~~~ls~~~~~~~~~ 416 (416)
|+.++++.|++|++|||++++++.|+++++.+++++++...+++++|-|++....|++.+|+++.||.+|+||++
T Consensus 327 ~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~~~~~p~~~~~~~~~~g~~~~~w~~ 401 (401)
T PLN02361 327 WGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGDGSWCPSGREWTLATSGHRYAVWHK 401 (401)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecCCCCCCCCCCceEEEecCceEEeeC
Confidence 998999999999999999999999999999999999999999999999999998888778999999999999986
No 2
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=5.3e-80 Score=611.95 Aligned_cols=386 Identities=48% Similarity=0.986 Sum_probs=328.4
Q ss_pred CceeEEEeeecCCCC--CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCC-CCCCCHHHHHHHHHHHH
Q 014892 27 GREILFQGFNWESCK--HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMK 103 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~--~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id-~~~Gt~~d~~~Lv~~aH 103 (416)
+.++|+|+|+|++.+ .|+++||++||||||+||||+|||+|++++.++|||+|.|||+|+ ++|||++||++||++||
T Consensus 23 ~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH 102 (428)
T PLN00196 23 AGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFH 102 (428)
T ss_pred CCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHH
Confidence 558999999999843 379999999999999999999999999999999999999999999 69999999999999999
Q ss_pred HCCCEEEEEEccccCcCCCCCCCCcccccCC----CCCCCCCCceec----CCCCCCCCCCCCCCCCCCcCCCCCHHHHH
Q 014892 104 QHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAVTS----CTGGLGNGSTGDNFHGVPNIDHTQHFVRK 175 (416)
Q Consensus 104 ~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~dln~~~~~v~~ 175 (416)
++||+||+|+|+||++.++....+.|..|.+ ...+|.+...+. +.++..+...++++.++||||++||+||+
T Consensus 103 ~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~ 182 (428)
T PLN00196 103 GKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQR 182 (428)
T ss_pred HCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHH
Confidence 9999999999999999887654444544432 123454322221 22233333455678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcCCceEEEcccCCCCC-CCCCCCCccchhhHhHhhhhccCCCc
Q 014892 176 DIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSHGLDYNQDSHRQRIINWIDGTGQL 254 (416)
Q Consensus 176 ~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (416)
+|+++++||++++||||||+|+|++++.+|++++.++.+|.|+|||+|+++++ +.++..|.++.+++.+..|++.+++.
T Consensus 183 ~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r~~l~~~l~~~g~~ 262 (428)
T PLN00196 183 ELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHRQELVNWVDRVGGA 262 (428)
T ss_pred HHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhHHHHHHHHHhcCCc
Confidence 99999999988899999999999999999999999888899999999998665 46677777766788888999876532
Q ss_pred ---ccccCchhhHHHHHHhcCchhhhhhhcCCCCCccccccCcceecccCCCCCCCCCCCCCChhhHHHHHHHHhcCCCe
Q 014892 255 ---SAAFDFTTKGILQEAVKGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGI 331 (416)
Q Consensus 255 ---~~~fdf~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~~~~~~~~~~~a~a~llt~pGi 331 (416)
.++|||++...+..++.++.+++++......++....|..+|||++|||++|+++.+..+.+++++|+|++||+||+
T Consensus 263 ~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~~lAyA~iLT~pG~ 342 (428)
T PLN00196 263 ASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKVMQGYAYILTHPGN 342 (428)
T ss_pred cCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchHHHHHHHHHcCCCc
Confidence 45899999887766776666666665544445566789999999999999999998876677889999999999999
Q ss_pred eEEecCCcCCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCC----CCCCCCCCcEEeee
Q 014892 332 PSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDG----SWCPAGKEWTLATS 407 (416)
Q Consensus 332 P~Iy~G~E~gw~~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R~~~~lvvinn~----~~~~~~~~~~~~ls 407 (416)
||||||+-|+|+ +.+.|++|+++||++++++.|+++++.++++++++.|+++++|.||+. +..|+ +|++++|
T Consensus 343 P~IyYg~~~~~~--~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 418 (428)
T PLN00196 343 PCIFYDHFFDWG--LKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLIPE--GFQVVAH 418 (428)
T ss_pred ceEeeCCCcCcc--HHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccCcc--cceEEEe
Confidence 999999999996 889999999999999999999999999999999999999999999995 45564 5999999
Q ss_pred CCceEEeeC
Q 014892 408 GHKYAVWHK 416 (416)
Q Consensus 408 ~~~~~~~~~ 416 (416)
|.+|+||++
T Consensus 419 g~~~~~w~~ 427 (428)
T PLN00196 419 GNGYAVWEK 427 (428)
T ss_pred cCCeEEEec
Confidence 999999986
No 3
>PLN02784 alpha-amylase
Probab=100.00 E-value=4.6e-74 Score=590.03 Aligned_cols=396 Identities=52% Similarity=1.022 Sum_probs=348.4
Q ss_pred ceeeeeeeccCceeEEEeeecCCCCCC-cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHH
Q 014892 17 LVKIRAVIRNGREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLL 95 (416)
Q Consensus 17 ~~~~~~~~~~~~~~~~q~f~~~~~~~G-~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~ 95 (416)
-.|+.+....++++|+|+|+|+++++| ++++|+++||||++||||+|||+|++++.+++||+|.|||+++++|||.+||
T Consensus 491 ~~~~~~~~~~~~eVmlQgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~EL 570 (894)
T PLN02784 491 PIKICSGTGSGFEILCQGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDEL 570 (894)
T ss_pred cccccccccCCceEEEEeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHH
Confidence 345566688889999999999998886 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCC---CCCCCCCCCCCCCCCCcCCCCCHH
Q 014892 96 KALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCT---GGLGNGSTGDNFHGVPNIDHTQHF 172 (416)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~dln~~~~~ 172 (416)
++||++||++||+||+|+|+||++..+...++.|..|.+ ..+|++..++... .+.++...+.+|..+||||+.||+
T Consensus 571 k~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npe 649 (894)
T PLN02784 571 KDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-RLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDF 649 (894)
T ss_pred HHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCC-eecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHH
Confidence 999999999999999999999999765544555655554 3456654333211 122333455678899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcCCceEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCC
Q 014892 173 VRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTG 252 (416)
Q Consensus 173 v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (416)
||++|+++++||++++||||||+|+|++++..|+++++++.+|.|+|||+|++..+..+.++|.++.+++.|..|++.++
T Consensus 650 VR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~~g~~~Ynqd~~rq~l~dwi~~tg 729 (894)
T PLN02784 650 VRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYTYGEMDYNQDAHRQRIVDWINATN 729 (894)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccccCccccCchhHHHHHHHHHHhCC
Confidence 99999999999998999999999999999999999999999899999999999777678899999999999999999888
Q ss_pred CcccccCchhhHHHHHHhc-CchhhhhhhcCCCCCccccccCcceecccCCCCCCCCCCCCCChhhHHHHHHHHhcCCCe
Q 014892 253 QLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGI 331 (416)
Q Consensus 253 ~~~~~fdf~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~~~~~~~~~~~a~a~llt~pGi 331 (416)
+..++|||++++.|.+++. ++.+++.+..++.+++++.+|.++|+||+|||+.+.++.+.++..+..+|||++||.||+
T Consensus 730 g~~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~ 809 (894)
T PLN02784 730 GTAGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGT 809 (894)
T ss_pred CceeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCc
Confidence 8889999999999999995 567888877777778889999999999999999998887776766788899999999999
Q ss_pred eEEecCCcCCCchhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCC--CCcEEeeeCC
Q 014892 332 PSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAG--KEWTLATSGH 409 (416)
Q Consensus 332 P~Iy~G~E~gw~~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R~~~~lvvinn~~~~~~~--~~~~~~ls~~ 409 (416)
||||||+.|+ .+.+.|++||.+||..-.-....++++.++.++|+...+++++|-|++.+..|++ .+|++++||.
T Consensus 810 PcVFy~h~y~---~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~~~~~~~~~sG~ 886 (894)
T PLN02784 810 PAVFYDHIFS---HYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQ 886 (894)
T ss_pred ceEEehhhhh---hhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCCCCceEEEEecC
Confidence 9999999985 3577799999999999888889999999999999999999999999999888753 3799999999
Q ss_pred ceEEeeC
Q 014892 410 KYAVWHK 416 (416)
Q Consensus 410 ~~~~~~~ 416 (416)
+|+||++
T Consensus 887 ~yavW~k 893 (894)
T PLN02784 887 DYKVWET 893 (894)
T ss_pred CeEEEeC
Confidence 9999986
No 4
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=8.6e-69 Score=545.90 Aligned_cols=349 Identities=26% Similarity=0.465 Sum_probs=268.4
Q ss_pred CceeEEEeeecCCCCCC-cHHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCcccccCC---------CCCCCCCCHH
Q 014892 27 GREILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLY---------SLNSSYGSEH 93 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~G-~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~---~~GY~~~d~~---------~id~~~Gt~~ 93 (416)
+.+||+|+|+|+++.+| +|+||++|||||++||||+|||+||+++.+ +|||++.||| +|||+|||++
T Consensus 2 ~~~~~~q~f~w~~~~~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~ 81 (479)
T PRK09441 2 RNGTMMQYFEWYLPNDGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKE 81 (479)
T ss_pred CCceEEEEEEeccCCCccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHH
Confidence 56899999999998876 677999999999999999999999999874 6999999999 7999999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEccccCcCCCC--CCC-------------------CcccccCCC----C-----CCCCCCc
Q 014892 94 LLKALLHKMKQHKVRAMADIVINHRVGTTQ--GHG-------------------GKYNRYDGI----P-----LSWDEHA 143 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~--~~~-------------------~~~~~f~~~----~-----~~~~~~~ 143 (416)
|||+||++||++||+||+|+|+||++..+. |+. ..|.+|... . ..|...+
T Consensus 82 dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (479)
T PRK09441 82 ELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFS 161 (479)
T ss_pred HHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCC
Confidence 999999999999999999999999996432 321 001111100 0 0111100
Q ss_pred eecCC---------------CCCCC----CCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHH
Q 014892 144 VTSCT---------------GGLGN----GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAK 204 (416)
Q Consensus 144 ~~~~~---------------~~~~~----~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~ 204 (416)
...+. .+|.. ...++.+..+||||++||+|+++|++++++|++++||||||+|+|++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~ 241 (479)
T PRK09441 162 GTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAW 241 (479)
T ss_pred CcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHH
Confidence 00000 11110 112334567999999999999999999999997799999999999999999
Q ss_pred HHHHHHHhcC-----CceEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcC-chhhhh
Q 014892 205 YVKEYIEGAR-----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKG-QFWRLR 278 (416)
Q Consensus 205 ~~~~~~~~~~-----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~-~~~~~~ 278 (416)
||++++++++ +.+++||+|.+. .+.+..|+...+...++|||++.+.+.+++.+ ....+.
T Consensus 242 f~~~~~~~~~~~~~~~~~~vGE~~~~~--------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~~l~ 307 (479)
T PRK09441 242 FIKEWIEHVREVAGKDLFIVGEYWSHD--------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDYDMR 307 (479)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeecCCC--------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCccchH
Confidence 9999998864 368999999763 24566677654445679999999999998843 333333
Q ss_pred hhcCCCCCccccccCcceecccCCCCCCCCCCCCCCh-hhHHHHHHHHhcCC-CeeEEecCCcCCCc-----hhHHHHHH
Q 014892 279 DAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPS-NHIMEGYAYILMHP-GIPSVFYDHFYDWG-----DSIHNQIV 351 (416)
Q Consensus 279 ~~~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~~~~~~-~~~~~a~a~llt~p-GiP~Iy~G~E~gw~-----~~l~~~~~ 351 (416)
+.... ......|..+++|++|||++|+.+...... ...++|+++|||+| |+|+||||+|+++. .+++++|+
T Consensus 308 ~~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~~i~ 385 (479)
T PRK09441 308 NIFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKEKLD 385 (479)
T ss_pred hhhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHHHHH
Confidence 33221 111234567899999999999988654222 23689999999999 99999999999875 36999999
Q ss_pred HHHHHHHhCcccCCCCeEEEEecCCEEEEEE-C----CEEEEEEcCCC
Q 014892 352 KLMDVRRQQDIHSRSSIKILEAQSNLYSAII-G----DKVCMKIGDGS 394 (416)
Q Consensus 352 ~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R-~----~~~lvvinn~~ 394 (416)
+|++|||++ +.|+...+..++++++|.| + +.++|||||++
T Consensus 386 ~Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~~ 430 (479)
T PRK09441 386 KLLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNGD 430 (479)
T ss_pred HHHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECCC
Confidence 999999996 4799998988999999998 2 35888898854
No 5
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.2e-67 Score=548.02 Aligned_cols=323 Identities=18% Similarity=0.289 Sum_probs=243.5
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
|||+||++||||||+||||+|||+|||+++++|||++.||++|||+|||+++|++||++||++|||||||+|+||+|.+|
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~ 255 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSH 255 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc-------ccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHH----HHHHHHHh-cCC
Q 014892 123 QGHGGK-------YNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA----WLRWLRNT-VGF 190 (416)
Q Consensus 123 ~~~~~~-------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~----~~~~w~~~-~gv 190 (416)
+|++.. |..-.+...+|.. .. .++....+ ..+..+|+||++||+||++|++ ++++|+++ +||
T Consensus 256 ~~f~~~~~~~~ga~~~~~spy~dwf~---~~-~~~~~~~w--~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~gi 329 (598)
T PRK10785 256 PWFDRHNRGTGGACHHPDSPWRDWYS---FS-DDGRALDW--LGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNI 329 (598)
T ss_pred HHHHHhhccccccccCCCCCcceeeE---EC-CCCCcCCc--CCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCC
Confidence 865321 1110000111210 00 01111111 1246899999999999999995 89999976 899
Q ss_pred CeEEecccCCCc--------HHHHHHHHHhcC---C-ceEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCccccc
Q 014892 191 QDFRFDFARGYS--------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAF 258 (416)
Q Consensus 191 DGfRlD~a~~~~--------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~f 258 (416)
||||||+|+.++ .+||++++++++ | .+++||+|.... .|+.. +..++++
T Consensus 330 DG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~------------------~~l~~-~~~d~~m 390 (598)
T PRK10785 330 DGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDAR------------------QWLQA-DVEDAAM 390 (598)
T ss_pred cEEEEecHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChh------------------hhccC-ccccccc
Confidence 999999999884 589999988875 4 789999997521 11111 1223333
Q ss_pred Cc-hhhHHHHHHhcC----------chhhhhhhcCCCCCccccccC----cceecccCCCCCCCCCCCCCChhhHHHHHH
Q 014892 259 DF-TTKGILQEAVKG----------QFWRLRDAQGKPPGVMGWWPS----RAVTFLDNHDTGSTQAHWPFPSNHIMEGYA 323 (416)
Q Consensus 259 df-~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~p~----~~~~fl~nHD~~R~~~~~~~~~~~~~~a~a 323 (416)
++ .+...++..+.+ +...+...+.. .....|. ..+||++|||++|+.+.+..+..++++|++
T Consensus 391 ny~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ 467 (598)
T PRK10785 391 NYRGFAFPLRAFLANTDIAYHPQQIDAQTCAAWMDE---YRAGLPHQQQLRQFNQLDSHDTARFKTLLGGDKARMPLALV 467 (598)
T ss_pred cchhhhhHHHHHhhccccccCccCCCHHHHHHHHHH---HHHhCCHHHHHHhhhccCCCccchhhhhhCCCHHHHHHHHH
Confidence 32 122222222211 11111111100 0001121 356999999999999988767778999999
Q ss_pred HHhcCCCeeEEecCCcCC--------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE--
Q 014892 324 YILMHPGIPSVFYDHFYD--------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII-- 382 (416)
Q Consensus 324 ~llt~pGiP~Iy~G~E~g--------------w~-----~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R-- 382 (416)
++||+||+||||||||+| |+ .+++++||+||+|||++|+|+.|+++.+..++++++|.|
T Consensus 468 ll~t~pGiP~IYYGdE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~ 547 (598)
T PRK10785 468 WLFTWPGVPCIYYGDEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVL 547 (598)
T ss_pred HHHhCCCCcEEEeeeeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEEC
Confidence 999999999999999975 42 479999999999999999999999999998889999988
Q ss_pred -CCEEEEEEcCC
Q 014892 383 -GDKVCMKIGDG 393 (416)
Q Consensus 383 -~~~~lvvinn~ 393 (416)
+++++|++|++
T Consensus 548 ~~~~vlVviN~s 559 (598)
T PRK10785 548 QQQRVLVAINRG 559 (598)
T ss_pred CCCEEEEEEECC
Confidence 67899999997
No 6
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=6.5e-64 Score=516.25 Aligned_cols=367 Identities=16% Similarity=0.247 Sum_probs=267.8
Q ss_pred CceeEEEeeecCCCC-----CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCcccccCCCCCCCCCCHHHHHHHHH
Q 014892 27 GREILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLH 100 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~-----~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~-~~GY~~~d~~~id~~~Gt~~d~~~Lv~ 100 (416)
.+.||||+|...+.. .|||+||+++||||++||||+|||+||+++++ +|||++.||++|+|+|||++||++||+
T Consensus 4 ~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~ 83 (539)
T TIGR02456 4 KDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVD 83 (539)
T ss_pred ccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHH
Confidence 468999999987753 48999999999999999999999999999986 799999999999999999999999999
Q ss_pred HHHHCCCEEEEEEccccCcCCCCCCC-------Ccc---cccCCCCCCCCCCce--ecC-CCCCC-CC-----CCCCCCC
Q 014892 101 KMKQHKVRAMADIVINHRVGTTQGHG-------GKY---NRYDGIPLSWDEHAV--TSC-TGGLG-NG-----STGDNFH 161 (416)
Q Consensus 101 ~aH~~Gi~VilD~V~NH~~~~~~~~~-------~~~---~~f~~~~~~~~~~~~--~~~-~~~~~-~~-----~~~~~~~ 161 (416)
+||++||+||||+|+||++.+|+|+. +.| +.+.+....+..... +.. ...|. .+ .....+.
T Consensus 84 ~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~ 163 (539)
T TIGR02456 84 EAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFS 163 (539)
T ss_pred HHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccC
Confidence 99999999999999999999998753 111 111110001110000 000 00010 00 0112356
Q ss_pred CCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------cHHHHHHHHHhcC---C-ceEEEcccC
Q 014892 162 GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-------------SAKYVKEYIEGAR---P-IFSVGEYWD 224 (416)
Q Consensus 162 ~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~-------------~~~~~~~~~~~~~---~-~~~vgE~~~ 224 (416)
.+||||++||+||++|++++++|+ ++||||||||+++++ ..+||+++++.++ | .+++||++.
T Consensus 164 ~~pdln~~np~vr~~l~~~~~~w~-~~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~ 242 (539)
T TIGR02456 164 HQPDLNYDNPAVHDAVHDVMRFWL-DLGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQ 242 (539)
T ss_pred CCCccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 899999999999999999999999 699999999999876 3579999988775 4 689999753
Q ss_pred CCCCCCCCCCCccchhhHhHhhhhcc-CC-CcccccCchhhHHHHHHh-cCchhhhhhhcCCCCCccccccCcceecccC
Q 014892 225 SCNYNSHGLDYNQDSHRQRIINWIDG-TG-QLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDN 301 (416)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~fdf~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~fl~n 301 (416)
. ...+..|++. .+ +++++|+|++...+..++ .++...+...+...... ..+...++|++|
T Consensus 243 ~---------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~--~~~~~~~~fl~n 305 (539)
T TIGR02456 243 W---------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDI--PDSCQWCIFLRN 305 (539)
T ss_pred C---------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhc--cCCCceeeecCC
Confidence 2 2344555543 22 578899999876555443 23333333222111000 012245689999
Q ss_pred CCCCC-------------------------------CCCCCCCChhhHHHHHHHHhcCCCeeEEecCCcCC---------
Q 014892 302 HDTGS-------------------------------TQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------- 341 (416)
Q Consensus 302 HD~~R-------------------------------~~~~~~~~~~~~~~a~a~llt~pGiP~Iy~G~E~g--------- 341 (416)
||++| +.+.+..+..++++|++++||+||+|+||||+|+|
T Consensus 306 HD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~~~~ 385 (539)
T TIGR02456 306 HDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIWLGD 385 (539)
T ss_pred CCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCccCC
Confidence 99954 33444444567899999999999999999999985
Q ss_pred ---------Cc---------------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe
Q 014892 342 ---------WG---------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA 373 (416)
Q Consensus 342 ---------w~---------------------------------------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~ 373 (416)
|+ .+++++||+||+|||++|+|+.|+++.+..
T Consensus 386 ~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~~ 465 (539)
T TIGR02456 386 RNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLPT 465 (539)
T ss_pred CcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEec
Confidence 21 237999999999999999999999999887
Q ss_pred c-CCEEEEEE---CCEEEEEEcCCCCCC---------CCCCcEEeeeCCce
Q 014892 374 Q-SNLYSAII---GDKVCMKIGDGSWCP---------AGKEWTLATSGHKY 411 (416)
Q Consensus 374 ~-~~~~~~~R---~~~~lvvinn~~~~~---------~~~~~~~~ls~~~~ 411 (416)
+ +++++|.| +++++||+|++.... .+..+.+++++..+
T Consensus 466 ~~~~v~~f~R~~~~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~~ 516 (539)
T TIGR02456 466 GNRRVLAFLREYEGERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAPF 516 (539)
T ss_pred CCCCEEEEEEEcCCcEEEEEEeCCCCCEEeeccccccccCcceecccCCcc
Confidence 4 46999988 678888898865321 12346666665543
No 7
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.7e-63 Score=516.25 Aligned_cols=342 Identities=18% Similarity=0.265 Sum_probs=251.8
Q ss_pred CceeEEEeeecCCC-------------C----------CCcHHHHHhhhhhHHHcCCCEEEeCCCCCC------------
Q 014892 27 GREILFQGFNWESC-------------K----------HDWWRNLERKVPDISKSGFTSVWLPPATHS------------ 71 (416)
Q Consensus 27 ~~~~~~q~f~~~~~-------------~----------~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~------------ 71 (416)
.+++|||+|...+. . .|||+||++||||||+||||+|||+||+++
T Consensus 188 ~~aviYqI~~DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~ 267 (683)
T PRK09505 188 HNATVYFVLTDRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGD 267 (683)
T ss_pred ccCcEEEEehhhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccC
Confidence 45889999876542 1 289999999999999999999999999986
Q ss_pred ---CCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCC------CCCC--------------c
Q 014892 72 ---FAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ------GHGG--------------K 128 (416)
Q Consensus 72 ---~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~------~~~~--------------~ 128 (416)
.++|||++.||+.|||+|||++||++||++||++||+||||+|+||++..+. ++.. .
T Consensus 268 ~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~ 347 (683)
T PRK09505 268 FPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKKTLGER 347 (683)
T ss_pred CCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhccccccccCcc
Confidence 2689999999999999999999999999999999999999999999996421 1111 1
Q ss_pred cc-ccCCCCCCCCCCc-eecCCCC--CCC----C---------------CCCCCCCCCCcCCCC----------------
Q 014892 129 YN-RYDGIPLSWDEHA-VTSCTGG--LGN----G---------------STGDNFHGVPNIDHT---------------- 169 (416)
Q Consensus 129 ~~-~f~~~~~~~~~~~-~~~~~~~--~~~----~---------------~~~~~~~~~~dln~~---------------- 169 (416)
|. |+...+.+|++.+ ...+.++ +.. . ...+....|||||++
T Consensus 348 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~ 427 (683)
T PRK09505 348 WSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPD 427 (683)
T ss_pred cccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcc
Confidence 11 1111122333221 1111111 000 0 011223568888886
Q ss_pred -------CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcC------------------CceEEEcccC
Q 014892 170 -------QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR------------------PIFSVGEYWD 224 (416)
Q Consensus 170 -------~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~------------------~~~~vgE~~~ 224 (416)
||+||++|++++++|++++||||||+|+|++++.+||+++.+.++ +.+++||+|.
T Consensus 428 ~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~~~~~~~vGEvw~ 507 (683)
T PRK09505 428 TRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALDDAPFWMTGEAWG 507 (683)
T ss_pred cccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccccCCeEEEEEecC
Confidence 459999999999999989999999999999999999999876541 3689999997
Q ss_pred CCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhc--CchhhhhhhcCCCCCccccccCcceecccCC
Q 014892 225 SCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK--GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNH 302 (416)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nH 302 (416)
... . ...|.. .++++++||++...+..++. ............. ..+...++|++||
T Consensus 508 ~~~--------------~-~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~l~FLdNH 565 (683)
T PRK09505 508 HGV--------------M-KSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMAEK-----LQDFNVLSYLSSH 565 (683)
T ss_pred Cch--------------h-hHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHhhh-----cCccceeecccCC
Confidence 521 0 122332 35889999998876655432 1122222211110 1122457899999
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHhcCCCeeEEecCCcCC-------------------Cc------hhHHHHHHHHHHHH
Q 014892 303 DTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD-------------------WG------DSIHNQIVKLMDVR 357 (416)
Q Consensus 303 D~~R~~~~~~~~~~~~~~a~a~llt~pGiP~Iy~G~E~g-------------------w~------~~l~~~~~~Li~lR 357 (416)
|++|+.+..... .++++|++++||+||+|+||||||+| |+ .+++++||+|++||
T Consensus 566 Dt~Rf~s~~~~~-~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LR 644 (683)
T PRK09505 566 DTRLFFEGGQSY-AKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFR 644 (683)
T ss_pred ChhhhhhhcCch-HHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccchHHHHHHHHHHHHHH
Confidence 999998876533 68899999999999999999999975 32 26999999999999
Q ss_pred HhCcccCCCCeEEEEecCCEEEEEE---CCEEEEEEcC
Q 014892 358 RQQDIHSRSSIKILEAQSNLYSAII---GDKVCMKIGD 392 (416)
Q Consensus 358 ~~~~~l~~G~~~~~~~~~~~~~~~R---~~~~lvvinn 392 (416)
+++|+|+.|+++.+. ++++++|.| +++++||+|-
T Consensus 645 k~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 645 ARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred hhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 999999999999874 568999998 5677777763
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=6.8e-62 Score=500.33 Aligned_cols=349 Identities=18% Similarity=0.248 Sum_probs=254.9
Q ss_pred CceeEEEeeecCCCC-----CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCC-CCcccccCCCCCCCCCCHHHHHHHHH
Q 014892 27 GREILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFAP-EGYLPQNLYSLNSSYGSEHLLKALLH 100 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~-----~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~-~GY~~~d~~~id~~~Gt~~d~~~Lv~ 100 (416)
.+.||||+|.+.+.. .|||+||+++|+||++||||+|||+||+++++. +||++.||++|||+|||+++|++||+
T Consensus 3 ~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~ 82 (543)
T TIGR02403 3 QKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVS 82 (543)
T ss_pred ccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHH
Confidence 358999999987653 389999999999999999999999999999864 69999999999999999999999999
Q ss_pred HHHHCCCEEEEEEccccCcCCCCCCCC------cccc---cCCC----CCCCCCCc---eecCCCCCCCCCCCCCCCCCC
Q 014892 101 KMKQHKVRAMADIVINHRVGTTQGHGG------KYNR---YDGI----PLSWDEHA---VTSCTGGLGNGSTGDNFHGVP 164 (416)
Q Consensus 101 ~aH~~Gi~VilD~V~NH~~~~~~~~~~------~~~~---f~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 164 (416)
+||++||+||||+|+||++.+|+|+.. .|.. +.+. +.+|.... .+.+...........+...+|
T Consensus 83 ~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~p 162 (543)
T TIGR02403 83 EAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQA 162 (543)
T ss_pred HHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCC
Confidence 999999999999999999999987542 2211 1110 01111100 000000000001111235799
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc-----------------------HHHHHHHHHhcC---CceE
Q 014892 165 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------------------AKYVKEYIEGAR---PIFS 218 (416)
Q Consensus 165 dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~-----------------------~~~~~~~~~~~~---~~~~ 218 (416)
|||++||+|+++|++++++|+ +.||||||||+|++++ .+||+++.+.++ +.|+
T Consensus 163 dln~~np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l 241 (543)
T TIGR02403 163 DLNWENPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVT 241 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEE
Confidence 999999999999999999999 6899999999999985 468999987763 3789
Q ss_pred EEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCchhhHHHHHHhcC--------chhhh---hhhcCCCCC
Q 014892 219 VGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKG--------QFWRL---RDAQGKPPG 286 (416)
Q Consensus 219 vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~fdf~~~~~l~~~~~~--------~~~~~---~~~~~~~~~ 286 (416)
|||+|..+ .+.+..|... .+.++++|+|.. .......+ +...+ ...+...
T Consensus 242 vgE~~~~~--------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 303 (543)
T TIGR02403 242 VGEMSSTT--------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTWQTG-- 303 (543)
T ss_pred EEEeCCCC--------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHHHHh--
Confidence 99999652 2334445432 235777888752 11111111 11112 1111110
Q ss_pred ccccccCcceecccCCCCCCCCCCCCCCh----hhHHHHHHHHhcCCCeeEEecCCcCCCc-------------------
Q 014892 287 VMGWWPSRAVTFLDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYDWG------------------- 343 (416)
Q Consensus 287 ~~~~~p~~~~~fl~nHD~~R~~~~~~~~~----~~~~~a~a~llt~pGiP~Iy~G~E~gw~------------------- 343 (416)
........++|++|||++|+.++++... ...+++++++||+||+|+||||||+|..
T Consensus 304 -~~~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~ 382 (543)
T TIGR02403 304 -MQAGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAY 382 (543)
T ss_pred -ccccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHH
Confidence 0001123467999999999998886432 2578888999999999999999997522
Q ss_pred ----------------------------------------------------------------hhHHHHHHHHHHHHHh
Q 014892 344 ----------------------------------------------------------------DSIHNQIVKLMDVRRQ 359 (416)
Q Consensus 344 ----------------------------------------------------------------~~l~~~~~~Li~lR~~ 359 (416)
.+++++||+||+|||+
T Consensus 383 ~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~ 462 (543)
T TIGR02403 383 DILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKS 462 (543)
T ss_pred HHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhh
Confidence 2588999999999999
Q ss_pred CcccCCCCeEEEEecC-CEEEEEE---CCEEEEEEcCCCC
Q 014892 360 QDIHSRSSIKILEAQS-NLYSAII---GDKVCMKIGDGSW 395 (416)
Q Consensus 360 ~~~l~~G~~~~~~~~~-~~~~~~R---~~~~lvvinn~~~ 395 (416)
+|+|+.|+++.+..++ ++++|.| +++++|++|.++.
T Consensus 463 ~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 463 EPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGE 502 (543)
T ss_pred cccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 9999999999987764 7999988 5678889998754
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=1.6e-61 Score=496.89 Aligned_cols=366 Identities=16% Similarity=0.203 Sum_probs=260.4
Q ss_pred eeeccCceeEEEeeecCCCC-----CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCcccccCCCCCCCCCCHHHH
Q 014892 22 AVIRNGREILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLL 95 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~~~~~-----~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~-~~GY~~~d~~~id~~~Gt~~d~ 95 (416)
|.++.. +||||+|...+.. .|||+||+++||||++||||+|||+||++++. .|||+|.||++|||+|||++||
T Consensus 5 ~~W~~~-~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 5 PHWWQN-GVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred chhhhc-CeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHH
Confidence 334544 8999999987743 48999999999999999999999999999876 6899999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEEccccCcCCCCCCCC------cccc---cCCC-----CCCCCCC---ceecCCCCCCCCCCCC
Q 014892 96 KALLHKMKQHKVRAMADIVINHRVGTTQGHGG------KYNR---YDGI-----PLSWDEH---AVTSCTGGLGNGSTGD 158 (416)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~------~~~~---f~~~-----~~~~~~~---~~~~~~~~~~~~~~~~ 158 (416)
++||++||++||+||+|+|+||++..|+|+.. .|.. +.+. +..|... ....+.+..+.....+
T Consensus 84 ~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~ 163 (551)
T PRK10933 84 DELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHL 163 (551)
T ss_pred HHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeec
Confidence 99999999999999999999999999988643 2211 1110 0011100 0000000000011112
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcH-----------------------HHHHHHHHhcC-
Q 014892 159 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------------------KYVKEYIEGAR- 214 (416)
Q Consensus 159 ~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~-----------------------~~~~~~~~~~~- 214 (416)
+...+||||++||+||++|++++++|+ ++||||||+|+|+++.. +||+++.+.+.
T Consensus 164 f~~~~pdLn~~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (551)
T PRK10933 164 FAPEQADLNWENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFT 242 (551)
T ss_pred ccccCCccCCCCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHhhc
Confidence 235799999999999999999999999 79999999999998863 57888876542
Q ss_pred --CceEEEcccCCCCCCCCCCCCccchhhHhHhhhhcc-CCCcccccCchhhHHHHHHhcCc--------hh---hhhhh
Q 014892 215 --PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVKGQ--------FW---RLRDA 280 (416)
Q Consensus 215 --~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~fdf~~~~~l~~~~~~~--------~~---~~~~~ 280 (416)
..+++||+|... .+.+..|... .+.++++|+|.. .......+. .. ++...
T Consensus 243 ~~~~~~vgE~~~~~--------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (551)
T PRK10933 243 PRGLMTVGEMSSTS--------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKTLFRH 306 (551)
T ss_pred ccCcEEEEeecCCC--------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHHHHHH
Confidence 257999998642 2344444322 234566777642 222222111 11 11111
Q ss_pred cCCCCCccccccCcceecccCCCCCCCCCCCCCChh----hHHHHHHHHhcCCCeeEEecCCcCCCc-------------
Q 014892 281 QGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSN----HIMEGYAYILMHPGIPSVFYDHFYDWG------------- 343 (416)
Q Consensus 281 ~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~~~~~~~----~~~~a~a~llt~pGiP~Iy~G~E~gw~------------- 343 (416)
+... +. .......|++|||++|+.++++.+.. .++++++++||+||+|+||||||+|..
T Consensus 307 ~~~~---~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~ 382 (551)
T PRK10933 307 WQQG---MH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDV 382 (551)
T ss_pred HHHh---hc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCH
Confidence 1110 00 01234689999999999998864322 356788899999999999999997531
Q ss_pred ----------------------------------------------------------------------hhHHHHHHHH
Q 014892 344 ----------------------------------------------------------------------DSIHNQIVKL 353 (416)
Q Consensus 344 ----------------------------------------------------------------------~~l~~~~~~L 353 (416)
.+++++||+|
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~L 462 (551)
T PRK10933 383 ESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKL 462 (551)
T ss_pred HHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHH
Confidence 1488999999
Q ss_pred HHHHHhCcccCCCCeEEEEe-cCCEEEEEE---CCEEEEEEcCCCCC-----C-CCCCcEEeeeCC
Q 014892 354 MDVRRQQDIHSRSSIKILEA-QSNLYSAII---GDKVCMKIGDGSWC-----P-AGKEWTLATSGH 409 (416)
Q Consensus 354 i~lR~~~~~l~~G~~~~~~~-~~~~~~~~R---~~~~lvvinn~~~~-----~-~~~~~~~~ls~~ 409 (416)
|+|||++|+|..|+++.+.. ++++++|+| +++++||+|.++.. + ..+.|++++++.
T Consensus 463 i~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~~~~~~~~~~~~~~~~~l~~~ 528 (551)
T PRK10933 463 IALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSREPQPWQPGQMRGNWQLLMHNY 528 (551)
T ss_pred HHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCCCeeeecCcccCCceEEeecC
Confidence 99999999999999998765 457999988 67889999997532 1 123566666653
No 10
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=1.8e-57 Score=466.07 Aligned_cols=332 Identities=18% Similarity=0.203 Sum_probs=243.6
Q ss_pred cCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 014892 26 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 103 (416)
Q Consensus 26 ~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH 103 (416)
..+.+||++..++++..|||+||+++|||||+||||+||||||++++ .+|||++.||++|+++|||.+|||+||++||
T Consensus 91 ~~~~viYE~hv~~f~~~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH 170 (542)
T TIGR02402 91 LEEAVIYELHVGTFTPEGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAH 170 (542)
T ss_pred ccccEEEEEEhhhcCCCCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999998876 4799999999999999999999999999999
Q ss_pred HCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCH---HHHHHHHHH
Q 014892 104 QHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH---FVRKDIIAW 180 (416)
Q Consensus 104 ~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~---~v~~~l~~~ 180 (416)
++||+||||+|+||++.++.... .+. + .|... ..+ ...+++|+++| +||++|+++
T Consensus 171 ~~Gi~VilD~V~NH~~~~~~~~~----~~~--~-y~~~~----~~~-----------~wg~~~n~~~~~~~~vr~~i~~~ 228 (542)
T TIGR02402 171 GLGLGVILDVVYNHFGPEGNYLP----RYA--P-YFTDR----YST-----------PWGAAINFDGPGSDEVRRYILDN 228 (542)
T ss_pred HCCCEEEEEEccCCCCCcccccc----ccC--c-cccCC----CCC-----------CCCCccccCCCcHHHHHHHHHHH
Confidence 99999999999999987653211 111 0 01100 001 11357999999 999999999
Q ss_pred HHHHHHhcCCCeEEecccCCCc----HHHHHHHHHhcC---C----ceEEEcccCCCCCCCCCCCCccchhhHhHhhhhc
Q 014892 181 LRWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGAR---P----IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWID 249 (416)
Q Consensus 181 ~~~w~~~~gvDGfRlD~a~~~~----~~~~~~~~~~~~---~----~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (416)
+++|++++||||||+|++.+++ .+||+++.+.++ | .+++||.|...+. . +.....
T Consensus 229 ~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~------~--------~~~~~~ 294 (542)
T TIGR02402 229 ALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPS------L--------VTPRED 294 (542)
T ss_pred HHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCc------c--------cccccC
Confidence 9999999999999999998885 459988877654 3 5799998754210 0 000000
Q ss_pred cCCCcccccCchhhHHHHHHhcCch-----------hhhhhhcCCC--------------CCc-cc-cccCcceecccCC
Q 014892 250 GTGQLSAAFDFTTKGILQEAVKGQF-----------WRLRDAQGKP--------------PGV-MG-WWPSRAVTFLDNH 302 (416)
Q Consensus 250 ~~~~~~~~fdf~~~~~l~~~~~~~~-----------~~~~~~~~~~--------------~~~-~~-~~p~~~~~fl~nH 302 (416)
.+.++++.++..++..+...+.|.. ..+...+... .+. .. ..|.+.++|++||
T Consensus 295 ~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nH 374 (542)
T TIGR02402 295 GGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNH 374 (542)
T ss_pred CccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHHHHhcccCccccccccccCCCCCCCCCHHHEEEEccCc
Confidence 0112344555555555555543210 1111111000 000 00 1244779999999
Q ss_pred CC-------CCCCCCCCCChhhHHHHHHHHhcCCCeeEEecCCcCC----------------------------------
Q 014892 303 DT-------GSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD---------------------------------- 341 (416)
Q Consensus 303 D~-------~R~~~~~~~~~~~~~~a~a~llt~pGiP~Iy~G~E~g---------------------------------- 341 (416)
|+ .|+...+. .++.++|++++||+||+||||||||+|
T Consensus 375 D~~gn~~~~~Rl~~~~~--~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~ 452 (542)
T TIGR02402 375 DQIGNRALGERLSQLLS--PGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWD 452 (542)
T ss_pred ccccccchhhhhhhcCC--HHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccc
Confidence 97 57766553 468999999999999999999999964
Q ss_pred -------------------Cc-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe----cCCEEEEEE-CCEEEEEE
Q 014892 342 -------------------WG-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA----QSNLYSAII-GDKVCMKI 390 (416)
Q Consensus 342 -------------------w~-------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~----~~~~~~~~R-~~~~lvvi 390 (416)
|+ .+++++||+||+|||++++|+.++...+.. ++.+++++. +++++|++
T Consensus 453 ~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (542)
T TIGR02402 453 PEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAA 532 (542)
T ss_pred cccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEE
Confidence 21 258899999999999999999887655433 446777766 66889999
Q ss_pred cCCCC
Q 014892 391 GDGSW 395 (416)
Q Consensus 391 nn~~~ 395 (416)
|.++.
T Consensus 533 N~~~~ 537 (542)
T TIGR02402 533 NLSTS 537 (542)
T ss_pred eCCCC
Confidence 98654
No 11
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.6e-56 Score=466.52 Aligned_cols=363 Identities=18% Similarity=0.226 Sum_probs=254.6
Q ss_pred ccCceeEEEeeecCCCC--------CCcHHHHHhh-----------hhhHHHcCCCEEEeCCCCCCCC----------CC
Q 014892 25 RNGREILFQGFNWESCK--------HDWWRNLERK-----------VPDISKSGFTSVWLPPATHSFA----------PE 75 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~--------~G~~~gi~~~-----------LdyLk~LGv~~I~L~Pi~~~~~----------~~ 75 (416)
...+.+||++..++++. .|+|.|++++ |||||+||||+||||||+++++ +|
T Consensus 124 ~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~w 203 (605)
T TIGR02104 124 NPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNW 203 (605)
T ss_pred ChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCC
Confidence 34457999999998763 4777777665 9999999999999999998764 49
Q ss_pred CcccccCCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceec-
Q 014892 76 GYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTS- 146 (416)
Q Consensus 76 GY~~~d~~~id~~~Gt--------~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~- 146 (416)
||++.||++++++||+ .+|||+||++||++||+||||+|+||++.... + +|.+....|. +.
T Consensus 204 GY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~---~---~f~~~~~~~~----~~~ 273 (605)
T TIGR02104 204 GYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREE---S---PFEKTVPGYY----YRY 273 (605)
T ss_pred CCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCC---C---cccCCCCCee----EEE
Confidence 9999999999999987 58999999999999999999999999985311 1 1221000110 00
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcC---C-ceEEEcc
Q 014892 147 CTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEY 222 (416)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~---~-~~~vgE~ 222 (416)
...+......+| ..++|+++|+||++|++++++|++++||||||+|++++++.+||+++.++++ | .+++||.
T Consensus 274 ~~~g~~~~~~g~----~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~ligE~ 349 (605)
T TIGR02104 274 NEDGTLSNGTGV----GNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILLYGEG 349 (605)
T ss_pred CCCCCccCCCcc----cCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEEEEcc
Confidence 001111111112 3589999999999999999999999999999999999999999999988765 3 6899999
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHh---------cCc---hhhhhhhcCCCCC----
Q 014892 223 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KGQ---FWRLRDAQGKPPG---- 286 (416)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~---------~~~---~~~~~~~~~~~~~---- 286 (416)
|+..+. ...+ ........ ... ...+.|++.++..++... .|. ...+...+.....
T Consensus 350 w~~~~~------~~~~-~~~~~~~~-~~~-~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~~~~~~~ 420 (605)
T TIGR02104 350 WDLGTP------LPPE-QKATKANA-YQM-PGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGSIELDAV 420 (605)
T ss_pred CCCCCC------cchh-hhhhhhcc-CCC-CceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCChhhccc
Confidence 976310 0000 00000000 000 124567888877776321 122 1223322221100
Q ss_pred -ccccccCcceecccCCCCCCCCCCCC----C-----ChhhHHHHHHHHhcCCCeeEEecCCcCC---------------
Q 014892 287 -VMGWWPSRAVTFLDNHDTGSTQAHWP----F-----PSNHIMEGYAYILMHPGIPSVFYDHFYD--------------- 341 (416)
Q Consensus 287 -~~~~~p~~~~~fl~nHD~~R~~~~~~----~-----~~~~~~~a~a~llt~pGiP~Iy~G~E~g--------------- 341 (416)
.....|..++||++|||+.|+...+. . ..++.++|++++||+||+||||||||++
T Consensus 421 ~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~ 500 (605)
T TIGR02104 421 KPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDS 500 (605)
T ss_pred ccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCc
Confidence 01224668899999999998743321 1 1357899999999999999999999974
Q ss_pred -----Cc-----hhHHHHHHHHHHHHHhCcccCCCCeEE-------EEe-cCCEEEEEE-C-------CEEEEEEcCCCC
Q 014892 342 -----WG-----DSIHNQIVKLMDVRRQQDIHSRSSIKI-------LEA-QSNLYSAII-G-------DKVCMKIGDGSW 395 (416)
Q Consensus 342 -----w~-----~~l~~~~~~Li~lR~~~~~l~~G~~~~-------~~~-~~~~~~~~R-~-------~~~lvvinn~~~ 395 (416)
|+ .++++++|+||+|||++|+|+.|++.. +.. ++.+++|+| + ++++|++|.++.
T Consensus 501 ~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~ 580 (605)
T TIGR02104 501 INQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPE 580 (605)
T ss_pred ccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCC
Confidence 32 368999999999999999999987632 222 457999988 2 268899998653
Q ss_pred C-----CCCCCcEEeeeCCc
Q 014892 396 C-----PAGKEWTLATSGHK 410 (416)
Q Consensus 396 ~-----~~~~~~~~~ls~~~ 410 (416)
. |..+.|+++++++.
T Consensus 581 ~~~v~lp~~~~w~~~~~~~~ 600 (605)
T TIGR02104 581 PVDIQLPSDGTWNVVVDNKN 600 (605)
T ss_pred CeEEECCCCCCEEEEECCCc
Confidence 2 33468999887753
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.6e-55 Score=459.92 Aligned_cols=353 Identities=15% Similarity=0.187 Sum_probs=246.4
Q ss_pred CceeEEEeeecCCCCC-----CcHHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHH
Q 014892 27 GREILFQGFNWESCKH-----DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKAL 98 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~-----G~~~gi~~~L-dyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~L 98 (416)
...+||++..+.++.+ |+|+||+++| ||||+||||+||||||++++ .+|||++.|||+|+|+|||++|||+|
T Consensus 146 ~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~l 225 (633)
T PRK12313 146 RPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYL 225 (633)
T ss_pred CCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHH
Confidence 3368999999877543 7999999995 99999999999999999987 57999999999999999999999999
Q ss_pred HHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHH
Q 014892 99 LHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDII 178 (416)
Q Consensus 99 v~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~ 178 (416)
|++||++||+||||+|+||++.++.+. ..|.+.+ .+.+.++... ... ..+.+++|++||+||++|+
T Consensus 226 v~~~H~~Gi~VilD~V~nH~~~~~~~~----~~~~~~~-------~~~~~~~~~~--~~~-~w~~~~~n~~~~~vr~~l~ 291 (633)
T PRK12313 226 VDALHQNGIGVILDWVPGHFPKDDDGL----AYFDGTP-------LYEYQDPRRA--ENP-DWGALNFDLGKNEVRSFLI 291 (633)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCcccc----cccCCCc-------ceeecCCCCC--cCC-CCCCcccCCCCHHHHHHHH
Confidence 999999999999999999999865421 1122110 0111111000 000 1234689999999999999
Q ss_pred HHHHHHHHhcCCCeEEecccCCC-----------------------cHHHHHHHHHhcC---C-ceEEEcccCCCCCCCC
Q 014892 179 AWLRWLRNTVGFQDFRFDFARGY-----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSH 231 (416)
Q Consensus 179 ~~~~~w~~~~gvDGfRlD~a~~~-----------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~ 231 (416)
+++++|++++||||||+|+|.++ ..+||+++.+.++ | .++|||.+...+
T Consensus 292 ~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---- 367 (633)
T PRK12313 292 SSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWP---- 367 (633)
T ss_pred HHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCc----
Confidence 99999999999999999988644 2579999987764 4 789999765321
Q ss_pred CCCCccchhhHhHhh-hhccCCCcccccCchhhHHHHHHhcCc-hhhhhhhcCCC-CCccccccCcceecccCCCCC---
Q 014892 232 GLDYNQDSHRQRIIN-WIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKP-PGVMGWWPSRAVTFLDNHDTG--- 305 (416)
Q Consensus 232 ~~~~~~~~~~~~l~~-~~~~~~~~~~~fdf~~~~~l~~~~~~~-~~~~~~~~~~~-~~~~~~~p~~~~~fl~nHD~~--- 305 (416)
.+.. ....+-+++..++..+...+...+..+ ..+-.. ..+. ..+..... ...++++|||+.
T Consensus 368 -----------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-e~~~l~~sHD~~~~g 434 (633)
T PRK12313 368 -----------KVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYH-HNLLTFSFMYAFS-ENFVLPFSHDEVVHG 434 (633)
T ss_pred -----------cccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccc-cccchHHHhhhhh-cccccCCCCcccccC
Confidence 0100 001111344555555555445444221 100000 0000 00000001 123567899994
Q ss_pred --CCCCCCCCCh----hhHHHHHHHHhcCCCeeEEecCCcCC------------Cc-------hhHHHHHHHHHHHHHhC
Q 014892 306 --STQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQ 360 (416)
Q Consensus 306 --R~~~~~~~~~----~~~~~a~a~llt~pGiP~Iy~G~E~g------------w~-------~~l~~~~~~Li~lR~~~ 360 (416)
|+...+..+. .+++++++++||+||+||||||+|+| |+ .++.+++|+||+||+++
T Consensus 435 ~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~ 514 (633)
T PRK12313 435 KKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTSDLNQLYKDE 514 (633)
T ss_pred CccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHHHHHHHHHhC
Confidence 5555554333 56899999999999999999999986 42 37999999999999999
Q ss_pred cccCCC-----CeEEEEec---CCEEEEEE-C----CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 014892 361 DIHSRS-----SIKILEAQ---SNLYSAII-G----DKVCMKIGDGSW--------CPAGKEWTLATSGHK 410 (416)
Q Consensus 361 ~~l~~G-----~~~~~~~~---~~~~~~~R-~----~~~lvvinn~~~--------~~~~~~~~~~ls~~~ 410 (416)
|+|+.| .++.+..+ +++++|.| . +.++||+|.++. .|.++.|+.+++...
T Consensus 515 paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~ 585 (633)
T PRK12313 515 PALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDS 585 (633)
T ss_pred hHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCc
Confidence 999854 46666543 36999988 2 468888998652 244578999887554
No 13
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=6.1e-55 Score=454.34 Aligned_cols=352 Identities=14% Similarity=0.156 Sum_probs=247.3
Q ss_pred eeEEEeeecCCCCCCcHHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC
Q 014892 29 EILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 105 (416)
Q Consensus 29 ~~~~q~f~~~~~~~G~~~gi~~~L-dyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~ 105 (416)
.+||++-.++++.+|+|+||+++| ||||+||||+||||||++++ .+|||+++|||+|+++|||++|||+||++||++
T Consensus 139 ~~iYe~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~ 218 (613)
T TIGR01515 139 VSIYELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQA 218 (613)
T ss_pred ceEEEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHC
Confidence 579999999998899999999997 99999999999999999986 479999999999999999999999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 014892 106 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 185 (416)
Q Consensus 106 Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~ 185 (416)
||+||||+|+||++.++... ..|.+.+. |. +.+... ......+.+++|+++|+||++|++++++|+
T Consensus 219 Gi~VilD~V~NH~~~~~~~~----~~~~~~~~-y~------~~~~~~---~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 219 GIGVILDWVPGHFPKDDHGL----AEFDGTPL-YE------HKDPRD---GEHWDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred CCEEEEEecccCcCCccchh----hccCCCcc-ee------ccCCcc---CcCCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999865421 11221110 10 011000 000112467899999999999999999999
Q ss_pred HhcCCCeEEecccCCC------------------------cHHHHHHHHHhcC---C-ceEEEcccCCCCCCCCCCCCcc
Q 014892 186 NTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYNQ 237 (416)
Q Consensus 186 ~~~gvDGfRlD~a~~~------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~~ 237 (416)
++|||||||+|+++++ ..+||+++.+.++ | .++|||.+...+
T Consensus 285 ~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~---------- 354 (613)
T TIGR01515 285 EFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWP---------- 354 (613)
T ss_pred HHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCc----------
Confidence 9999999999997544 2579999988765 4 789999764311
Q ss_pred chhhHhHhhhhccCCCcccccCchhhHHHHHHhcCc-hhhhhhhcCCCCCccccccCcceecccCCCC-----CCCCCCC
Q 014892 238 DSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDT-----GSTQAHW 311 (416)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~-----~R~~~~~ 311 (416)
........++-+++..+++.++..+...+..+ ..+.......... +...-.....+++|||+ +|+...+
T Consensus 355 ----~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~sHD~~~~g~~~i~~~~ 429 (613)
T TIGR01515 355 ----GVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFS-MLYAFSENFVLPLSHDEVVHGKKSLLNKM 429 (613)
T ss_pred ----cccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHH-HHHHhhhccccCCCCCCcccCcccHHHhC
Confidence 00011111122455666666655555554221 1111100000000 00000112346789999 3444444
Q ss_pred CCC----hhhHHHHHHHHhcCCCeeEEecCCcCC------------Cc-------hhHHHHHHHHHHHHHhCcccCCCCe
Q 014892 312 PFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHSRSSI 368 (416)
Q Consensus 312 ~~~----~~~~~~a~a~llt~pGiP~Iy~G~E~g------------w~-------~~l~~~~~~Li~lR~~~~~l~~G~~ 368 (416)
..+ ..+++++++++||+||+||||||+|+| |+ .++.+++|+|++||+++|+|+.|++
T Consensus 430 ~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~ 509 (613)
T TIGR01515 430 PGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDF 509 (613)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCC
Confidence 332 247899999999999999999999985 32 3689999999999999999986644
Q ss_pred -----EEEEe---cCCEEEEEE-C----CEEEEEEcCCCCC--------CCCCCcEEeeeCC
Q 014892 369 -----KILEA---QSNLYSAII-G----DKVCMKIGDGSWC--------PAGKEWTLATSGH 409 (416)
Q Consensus 369 -----~~~~~---~~~~~~~~R-~----~~~lvvinn~~~~--------~~~~~~~~~ls~~ 409 (416)
+.+.. ++++++|.| . ++++||+|.+... |.+|.|+.+|+..
T Consensus 510 ~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~~il~Sd 571 (613)
T TIGR01515 510 DPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQPGQYREVLNSD 571 (613)
T ss_pred CCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCCCCeEEEEEeCC
Confidence 33543 346999988 2 3688999996542 3357888888644
No 14
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.2e-53 Score=446.18 Aligned_cols=362 Identities=16% Similarity=0.237 Sum_probs=254.4
Q ss_pred eeeccCceeEEEeeecCCCC---------CCcHHHHHhh--hhhHHHcCCCEEEeCCCCCCC-----------CCCCccc
Q 014892 22 AVIRNGREILFQGFNWESCK---------HDWWRNLERK--VPDISKSGFTSVWLPPATHSF-----------APEGYLP 79 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~~~~~---------~G~~~gi~~~--LdyLk~LGv~~I~L~Pi~~~~-----------~~~GY~~ 79 (416)
|.....+.|||++..++++. .|+|+||+++ |||||+||||+||||||+++. ++|||+|
T Consensus 149 p~~~~~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~ 228 (688)
T TIGR02100 149 PRTPWEDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNT 228 (688)
T ss_pred CCCCccccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCc
Confidence 33344678999999998764 3899999996 999999999999999999874 3699999
Q ss_pred ccCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCC-CcccccCCCCCCCCCCceecCC-CCCCCC
Q 014892 80 QNLYSLNSSY---GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG-GKYNRYDGIPLSWDEHAVTSCT-GGLGNG 154 (416)
Q Consensus 80 ~d~~~id~~~---Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~-~~~~~~ 154 (416)
.|||+|+|+| |+.+|||+||++||++||+||||+|+||++..+.... ..+..+.. ..|... ... .+....
T Consensus 229 ~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~--~~yy~~---~~~~~~~~~~ 303 (688)
T TIGR02100 229 LGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDN--ASYYRL---QPDDKRYYIN 303 (688)
T ss_pred ccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCC--CcceEe---cCCCCceecC
Confidence 9999999999 6789999999999999999999999999998654211 11111110 011100 000 011111
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc---------HHHHHHHHHh-cCC-ceEEEccc
Q 014892 155 STGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEG-ARP-IFSVGEYW 223 (416)
Q Consensus 155 ~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~---------~~~~~~~~~~-~~~-~~~vgE~~ 223 (416)
.....+++|+++|+||++|++++++|++++||||||+|+|..++ ..+++++.+. +.+ .+++||.|
T Consensus 304 ----~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W 379 (688)
T TIGR02100 304 ----DTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPW 379 (688)
T ss_pred ----CCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEeee
Confidence 12335789999999999999999999999999999999998875 3678887764 333 68999999
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcCc---hhhhhhhcCCCCCccc---cccCccee
Q 014892 224 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG---WWPSRAVT 297 (416)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~---~~p~~~~~ 297 (416)
+...- .+. +..+ ....+.|+..++..++.++.|+ ..++...+.....++. ..|..++|
T Consensus 380 ~~~~~-----~~~-------~~~~----~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~~~~iN 443 (688)
T TIGR02100 380 DIGPG-----GYQ-------VGNF----PPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRPWASIN 443 (688)
T ss_pred cCCCC-----ccc-------ccCC----CCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCcCEEEE
Confidence 75310 000 0000 0123567778888888877554 3344444433222221 24568899
Q ss_pred cccCCCCCCCCCC---------CC-C----------------------------ChhhHHHHHHHHhcCCCeeEEecCCc
Q 014892 298 FLDNHDTGSTQAH---------WP-F----------------------------PSNHIMEGYAYILMHPGIPSVFYDHF 339 (416)
Q Consensus 298 fl~nHD~~R~~~~---------~~-~----------------------------~~~~~~~a~a~llt~pGiP~Iy~G~E 339 (416)
||++||+.++... .+ . ..++++++++++||+||+||||||||
T Consensus 444 yv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i~~GdE 523 (688)
T TIGR02100 444 FVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPMLLAGDE 523 (688)
T ss_pred EEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCceeeecHh
Confidence 9999999763221 00 0 02468999999999999999999999
Q ss_pred CC--------------------Cc-----hhHHHHHHHHHHHHHhCcccCCCCeE-------------EEEe--------
Q 014892 340 YD--------------------WG-----DSIHNQIVKLMDVRRQQDIHSRSSIK-------------ILEA-------- 373 (416)
Q Consensus 340 ~g--------------------w~-----~~l~~~~~~Li~lR~~~~~l~~G~~~-------------~~~~-------- 373 (416)
++ |+ .++++++|+||+|||+||+|+.+++. .+..
T Consensus 524 ~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~~~~~~ 603 (688)
T TIGR02100 524 FGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGEPMTEE 603 (688)
T ss_pred hccCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCCcCChh
Confidence 74 43 47999999999999999999987543 2211
Q ss_pred -----cCCEEEEEE-C----------CEEEEEEcCCCCC-----CCC-CCcEEeeeC
Q 014892 374 -----QSNLYSAII-G----------DKVCMKIGDGSWC-----PAG-KEWTLATSG 408 (416)
Q Consensus 374 -----~~~~~~~~R-~----------~~~lvvinn~~~~-----~~~-~~~~~~ls~ 408 (416)
...+++|.. + +.++|++|..... |.. ..|+.+++.
T Consensus 604 ~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~~~w~~~~dt 660 (688)
T TIGR02100 604 DWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGGGRWELVLDT 660 (688)
T ss_pred hcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCCCcEEEEecC
Confidence 136788865 1 2478888875432 322 378888765
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.1e-53 Score=452.71 Aligned_cols=355 Identities=15% Similarity=0.211 Sum_probs=241.7
Q ss_pred CceeEEEeeecCCCCC------CcHHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHH
Q 014892 27 GREILFQGFNWESCKH------DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKA 97 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~------G~~~gi~~~L-dyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~ 97 (416)
.+.+||++..+.++.+ |+|+||+++| ||||+||||+||||||++++ .+|||++.||++|+|+|||++|||+
T Consensus 240 ~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~ 319 (726)
T PRK05402 240 APISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRY 319 (726)
T ss_pred CCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHH
Confidence 4468999999877643 7999999996 99999999999999999876 4799999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHH
Q 014892 98 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 177 (416)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l 177 (416)
||++||++||+||||+|+||++.++.+. ..|.+.+. | .+.+... .....+ +..++|+++|+||++|
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~~----~~~~~~~~-y------~~~~~~~--~~~~~w-~~~~~n~~~~~v~~~l 385 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHGL----ARFDGTAL-Y------EHADPRE--GEHPDW-GTLIFNYGRNEVRNFL 385 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccch----hccCCCcc-e------eccCCcC--CccCCC-CCccccCCCHHHHHHH
Confidence 9999999999999999999998865421 11221110 0 0001000 000111 2246899999999999
Q ss_pred HHHHHHHHHhcCCCeEEecccCCC------------------------cHHHHHHHHHhcC---C-ceEEEcccCCCCCC
Q 014892 178 IAWLRWLRNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYN 229 (416)
Q Consensus 178 ~~~~~~w~~~~gvDGfRlD~a~~~------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~ 229 (416)
++++++|++++||||||+|++.++ ..+||+++++.++ | .+++||.+...+.
T Consensus 386 ~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~- 464 (726)
T PRK05402 386 VANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPG- 464 (726)
T ss_pred HHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcC-
Confidence 999999999999999999987544 3579999988765 4 7899995532100
Q ss_pred CCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhc-CchhhhhhhcCCCCCccccccCcceecccCCCCCC--
Q 014892 230 SHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS-- 306 (416)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R-- 306 (416)
........+.+++..++......+...+. ....+....-........... ...++++|||+.+
T Consensus 465 -------------~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~l~~sHD~~~~g 530 (726)
T PRK05402 465 -------------VTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYS-ENFVLPLSHDEVVHG 530 (726)
T ss_pred -------------ccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhh-ccccCCCCCceeeeC
Confidence 00000011112444444443333333321 111000000000000000011 1235678999964
Q ss_pred ---CCCCCCCC----hhhHHHHHHHHhcCCCeeEEecCCcCC------------Cc-------hhHHHHHHHHHHHHHhC
Q 014892 307 ---TQAHWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQ 360 (416)
Q Consensus 307 ---~~~~~~~~----~~~~~~a~a~llt~pGiP~Iy~G~E~g------------w~-------~~l~~~~~~Li~lR~~~ 360 (416)
+...+..+ ..+++++++++||+||+||||||+|+| |+ .++.+++|+|++||+++
T Consensus 531 ~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~ 610 (726)
T PRK05402 531 KGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVRDLNHLYRAE 610 (726)
T ss_pred cccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHHHHHHHHHhC
Confidence 33333322 246889999999999999999999975 43 36999999999999999
Q ss_pred cccCCCC-----eEEEEe---cCCEEEEEE--C---CEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 014892 361 DIHSRSS-----IKILEA---QSNLYSAII--G---DKVCMKIGDGSW--------CPAGKEWTLATSGHK 410 (416)
Q Consensus 361 ~~l~~G~-----~~~~~~---~~~~~~~~R--~---~~~lvvinn~~~--------~~~~~~~~~~ls~~~ 410 (416)
|+|+.|+ ++.+.. ++++++|.| + ++++||+|.++. .|.++.|+.+++...
T Consensus 611 ~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~ilnsd~ 681 (726)
T PRK05402 611 PALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREVLNTDA 681 (726)
T ss_pred hhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEEEcCcc
Confidence 9998764 344543 346999998 2 568999998653 244578999998764
No 16
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.1e-55 Score=426.46 Aligned_cols=280 Identities=24% Similarity=0.422 Sum_probs=202.1
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
|||+||++||||||+||||+|||+||++++ ++|||+|.||++|+|+|||++||++||++||++||+||+|+|+||++..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~ 80 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSDD 80 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEETT
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccccc
Confidence 899999999999999999999999999997 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC----------cccccCC----CCCCCCCCceecCCCCC--CCC-CC--CCCCCCCCcCCCCCHHHHHHHHHHHH
Q 014892 122 TQGHGG----------KYNRYDG----IPLSWDEHAVTSCTGGL--GNG-ST--GDNFHGVPNIDHTQHFVRKDIIAWLR 182 (416)
Q Consensus 122 ~~~~~~----------~~~~f~~----~~~~~~~~~~~~~~~~~--~~~-~~--~~~~~~~~dln~~~~~v~~~l~~~~~ 182 (416)
++++.. .|..+.. .+..|.. ..++. ... .. .+.+..+||||++||+||++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 81 HPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYS-----YFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp SHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBC-----STTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred cccccccccccccccccceeeccccccccccccc-----ccccccccccccccccccccccchhhhhhhhhhhhhccccc
Confidence 986321 1111110 0011110 00000 000 01 24678999999999999999999999
Q ss_pred HHHHhcCCCeEEecccCCCcHHHHHHHHHhcC----CceEEEcccCCCCCCCCCCCCccchhhHhHhhhh-ccCCCcccc
Q 014892 183 WLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR----PIFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWI-DGTGQLSAA 257 (416)
Q Consensus 183 ~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~----~~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~ 257 (416)
+|+ +.||||||+|+|++++.++|++++++++ ..+++||+|... ...+..+. .........
T Consensus 156 ~w~-~~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~--------------~~~~~~~~~~~~~~~~~~ 220 (316)
T PF00128_consen 156 FWI-EEGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD--------------NEDLRQYAYDGYFDLDSV 220 (316)
T ss_dssp HHH-HTTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS--------------HHHHHHHHHHGTTSHSEE
T ss_pred chh-hceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC--------------ccccchhhhccccccchh
Confidence 999 7789999999999999999999998876 378999999762 12222221 111122334
Q ss_pred cCchhhHHHHHHh----cCc--hhhhhhhcCCCCCccccccCcceecccCCCCCCCCCCCCCChhhHHHHHHHHhcCCCe
Q 014892 258 FDFTTKGILQEAV----KGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGI 331 (416)
Q Consensus 258 fdf~~~~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~~~~~~~~~~~a~a~llt~pGi 331 (416)
+++.......... .+. ...+............ .+...++|++|||++|+.+.+.....++++|++++||+||+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG~ 299 (316)
T PF00128_consen 221 FDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP-DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPGI 299 (316)
T ss_dssp EHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST-TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSSE
T ss_pred hcccccccccchhhhhccccchhhhhhhhhhhhhhhhc-ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCCc
Confidence 5555443333332 111 1122111110000000 13477999999999998877764444899999999999999
Q ss_pred eEEecCCcCCCc
Q 014892 332 PSVFYDHFYDWG 343 (416)
Q Consensus 332 P~Iy~G~E~gw~ 343 (416)
|+||||||+|..
T Consensus 300 P~iy~G~E~g~~ 311 (316)
T PF00128_consen 300 PMIYYGDEIGMT 311 (316)
T ss_dssp EEEETTGGGTBB
T ss_pred cEEEeChhccCC
Confidence 999999999854
No 17
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=3.7e-53 Score=439.41 Aligned_cols=354 Identities=16% Similarity=0.236 Sum_probs=245.0
Q ss_pred eccCceeEEEeeecCCCC---------CCcHHHHHh--hhhhHHHcCCCEEEeCCCCCCC-----------CCCCccccc
Q 014892 24 IRNGREILFQGFNWESCK---------HDWWRNLER--KVPDISKSGFTSVWLPPATHSF-----------APEGYLPQN 81 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~---------~G~~~gi~~--~LdyLk~LGv~~I~L~Pi~~~~-----------~~~GY~~~d 81 (416)
....+.|||++..++++. .|+|.|+++ +|||||+||||+||||||+++. .||||+|.|
T Consensus 146 ~~~~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~ 225 (658)
T PRK03705 146 TPWGSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLA 225 (658)
T ss_pred CCccccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCccccc
Confidence 334578999999998863 289999997 4999999999999999999864 479999999
Q ss_pred CCCCCCCCCCH-----HHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCC---CCCCCCCCceecCCCCCCC
Q 014892 82 LYSLNSSYGSE-----HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG---IPLSWDEHAVTSCTGGLGN 153 (416)
Q Consensus 82 ~~~id~~~Gt~-----~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~ 153 (416)
||+|+|+|||. +|||+||++||++||+||||+|+||++..... +.+..+.+ ..+.|.. .++...
T Consensus 226 yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d~~~yy~~~------~~g~~~ 297 (658)
T PRK03705 226 MFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLD--GPTLSLRGIDNRSYYWIR------EDGDYH 297 (658)
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCC--CcchhcccCCCccceEEC------CCCCcC
Confidence 99999999985 79999999999999999999999999974220 11111111 0011111 111111
Q ss_pred CCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc--HH------HHHHHHHh-c-CCceEEEccc
Q 014892 154 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--AK------YVKEYIEG-A-RPIFSVGEYW 223 (416)
Q Consensus 154 ~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~--~~------~~~~~~~~-~-~~~~~vgE~~ 223 (416)
.+. ...++||+++|+||++|++++++|+++|||||||+|+|.++. +. +++++... + ...+++||.|
T Consensus 298 ~~~----g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~W 373 (658)
T PRK03705 298 NWT----GCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPW 373 (658)
T ss_pred CCC----CccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEEecc
Confidence 122 235799999999999999999999999999999999998886 22 33444331 1 1367999999
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcCc---hhhhhhhcCCCCCcc---ccccCccee
Q 014892 224 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVM---GWWPSRAVT 297 (416)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~---~~~~~~~~~~~~~~~---~~~p~~~~~ 297 (416)
+..+- .+ ++..+ ...-+.|+..++..++..+.+. ..++...+.....++ ...|.+++|
T Consensus 374 d~~~~-----~~-------~~g~~----~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~~p~~siN 437 (658)
T PRK03705 374 DIGPG-----GY-------QVGNF----PPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGRLPSASIN 437 (658)
T ss_pred cCCCC-----hh-------hhcCC----CcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCCCCCeEEE
Confidence 75310 00 00000 1123567777888888775322 223333332221111 234678999
Q ss_pred cccCCCCCCCCCCC---------C-----------------------------CChhhHHHHHHHHhcCCCeeEEecCCc
Q 014892 298 FLDNHDTGSTQAHW---------P-----------------------------FPSNHIMEGYAYILMHPGIPSVFYDHF 339 (416)
Q Consensus 298 fl~nHD~~R~~~~~---------~-----------------------------~~~~~~~~a~a~llt~pGiP~Iy~G~E 339 (416)
||++||+.++...+ + ...++.|+|+++||+++|+||||+|||
T Consensus 438 yv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P~i~~GdE 517 (658)
T PRK03705 438 LVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTPMLLAGDE 517 (658)
T ss_pred EEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCchHHHhhHH
Confidence 99999996542200 0 012357899999999999999999999
Q ss_pred CC--------------------Cc---hhHHHHHHHHHHHHHhCcccCCCCe--------EEEEec------------CC
Q 014892 340 YD--------------------WG---DSIHNQIVKLMDVRRQQDIHSRSSI--------KILEAQ------------SN 376 (416)
Q Consensus 340 ~g--------------------w~---~~l~~~~~~Li~lR~~~~~l~~G~~--------~~~~~~------------~~ 376 (416)
++ |+ .++++++|+||+|||+||+|+..++ ..+..+ ..
T Consensus 518 ~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~w~~~~~ 597 (658)
T PRK03705 518 HGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSADEWQQGPK 597 (658)
T ss_pred hccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChhHhCCcce
Confidence 84 33 3799999999999999999986554 222222 23
Q ss_pred EEEEEECCEEEEEEcCCCCC-----CCCCCcEEee
Q 014892 377 LYSAIIGDKVCMKIGDGSWC-----PAGKEWTLAT 406 (416)
Q Consensus 377 ~~~~~R~~~~lvvinn~~~~-----~~~~~~~~~l 406 (416)
.+++...+.++|++|..... |. +.|+.++
T Consensus 598 ~~~~~~~~~~~v~~N~~~~~~~~~lp~-~~w~~~~ 631 (658)
T PRK03705 598 QLQILLSDRWLIAINATLEVTEIVLPE-GEWHAIP 631 (658)
T ss_pred EEEEEECCCEEEEECCCCCCeEEECCC-cceEEEE
Confidence 45565567789999886432 44 5799884
No 18
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.2e-51 Score=427.49 Aligned_cols=351 Identities=15% Similarity=0.141 Sum_probs=245.1
Q ss_pred ceeEEEeeecCCCC--C---CcHHHHHhhh-hhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHH
Q 014892 28 REILFQGFNWESCK--H---DWWRNLERKV-PDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALL 99 (416)
Q Consensus 28 ~~~~~q~f~~~~~~--~---G~~~gi~~~L-dyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv 99 (416)
..+||++-..+++. + |+|++++++| +|||+||||+|+||||++++ .+|||++++||+++++||+++|||+||
T Consensus 144 ~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv 223 (639)
T PRK14706 144 PISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLV 223 (639)
T ss_pred CcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHH
Confidence 36899998877643 2 5999999997 89999999999999999875 479999999999999999999999999
Q ss_pred HHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHH
Q 014892 100 HKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 179 (416)
Q Consensus 100 ~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~ 179 (416)
++||++||+||||+|+||++.+..+. ..|++.+. ..+.++.. .....|.. ..+|+.+|+||++|++
T Consensus 224 ~~~H~~gi~VilD~v~nH~~~~~~~l----~~~dg~~~-------y~~~~~~~--g~~~~w~~-~~~~~~~~eVr~~l~~ 289 (639)
T PRK14706 224 NHLHGLGIGVILDWVPGHFPTDESGL----AHFDGGPL-------YEYADPRK--GYHYDWNT-YIFDYGRNEVVMFLIG 289 (639)
T ss_pred HHHHHCCCEEEEEecccccCcchhhh----hccCCCcc-------eeccCCcC--CcCCCCCC-cccCCCCHHHHHHHHH
Confidence 99999999999999999999865421 11221110 11111100 00112222 2489999999999999
Q ss_pred HHHHHHHhcCCCeEEecccCCC----------------------cHHHHHHHHHhcC---C-ceEEEcccCCCCCCCCCC
Q 014892 180 WLRWLRNTVGFQDFRFDFARGY----------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGL 233 (416)
Q Consensus 180 ~~~~w~~~~gvDGfRlD~a~~~----------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~ 233 (416)
++++|++++||||||+|++.+| ...||+++.+.++ | .++|||.+...+
T Consensus 290 ~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~------ 363 (639)
T PRK14706 290 SALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFP------ 363 (639)
T ss_pred HHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCc------
Confidence 9999999999999999998876 2468888877654 5 789999876421
Q ss_pred CCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhc-CchhhhhhhcCCCCCcccccc-CcceecccCCCCCCCCC--
Q 014892 234 DYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWP-SRAVTFLDNHDTGSTQA-- 309 (416)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~~~fl~nHD~~R~~~-- 309 (416)
.+..-...+-+++..++......+.+.+. ....+.... .. ........ .....+++|||+.+...
T Consensus 364 ---------~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~-~~-lt~~~~y~~~e~~il~~SHDev~~~k~s 432 (639)
T PRK14706 364 ---------GVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHH-HK-LTFFNVYRTSENYVLAISHDEVVHLKKS 432 (639)
T ss_pred ---------CcccccCCCCccccEeccHHHHHHHHHhccCchhhhhch-hc-cchhhhhhccccEecCCCCccccCCccc
Confidence 01110111224556666555554554442 222221111 00 00000011 12234789999988532
Q ss_pred ---CCCCC----hhhHHHHHHHHhcCCCeeEEecCCcCC------------Cc-------hhHHHHHHHHHHHHHhCccc
Q 014892 310 ---HWPFP----SNHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIH 363 (416)
Q Consensus 310 ---~~~~~----~~~~~~a~a~llt~pGiP~Iy~G~E~g------------w~-------~~l~~~~~~Li~lR~~~~~l 363 (416)
....+ ..++++++++++|+||+|+||||+|+| |. ..+.+++|+|++||+++|+|
T Consensus 433 l~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL 512 (639)
T PRK14706 433 MVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDW 512 (639)
T ss_pred hHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHH
Confidence 12211 246899999999999999999999997 32 24889999999999999999
Q ss_pred CCCC-----eEEEEe---cCCEEEEEE---C--CEEEEEEcCCCC--------CCCCCCcEEeeeCC
Q 014892 364 SRSS-----IKILEA---QSNLYSAII---G--DKVCMKIGDGSW--------CPAGKEWTLATSGH 409 (416)
Q Consensus 364 ~~G~-----~~~~~~---~~~~~~~~R---~--~~~lvvinn~~~--------~~~~~~~~~~ls~~ 409 (416)
..|+ ++.+.. +++++||.| + +.++||+|.+.. .|..|.|+.+++..
T Consensus 513 ~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~~i~nsd 579 (639)
T PRK14706 513 HRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYRVLLSTD 579 (639)
T ss_pred hhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEEEEEcCC
Confidence 8776 334433 357999998 1 238899999663 25568898888654
No 19
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=4.1e-50 Score=440.84 Aligned_cols=321 Identities=16% Similarity=0.180 Sum_probs=226.2
Q ss_pred ccCceeEEEeeecCCCC-----CCcHHHHHhhh------hhHHHcCCCEEEeCCCCCCC-----------CCCCcccccC
Q 014892 25 RNGREILFQGFNWESCK-----HDWWRNLERKV------PDISKSGFTSVWLPPATHSF-----------APEGYLPQNL 82 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~-----~G~~~gi~~~L------dyLk~LGv~~I~L~Pi~~~~-----------~~~GY~~~d~ 82 (416)
.-.+.+||++-.+.++. .|+++|+.++| +|||+||||+||||||+++. +||||++.||
T Consensus 155 ~~~d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~y 234 (1221)
T PRK14510 155 DWDDSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAF 234 (1221)
T ss_pred CcccCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCC
Confidence 33567999988877653 14555555555 49999999999999999874 3689999999
Q ss_pred CCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCC-cccccCCCCCCCCCCceecCCCCCCCCCCCCC
Q 014892 83 YSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG-KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDN 159 (416)
Q Consensus 83 ~~id~~~G--t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (416)
++|+|+|| +.+|||+||++||++||+||||+|+||++.++..... .+..+.. ..|... .....+....+.+|
T Consensus 235 fa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~--~~yy~~--~~~~~~~y~~~~G~- 309 (1221)
T PRK14510 235 LAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDN--SPYYRL--EPGNPKEYENWWGC- 309 (1221)
T ss_pred CCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCC--CCceEe--cCCCCCcccCCCCC-
Confidence 99999999 9999999999999999999999999999987642100 0000110 001000 00000001111222
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC---cHHHHHHHHHhc---CC------ceEEEcccCCCC
Q 014892 160 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY---SAKYVKEYIEGA---RP------IFSVGEYWDSCN 227 (416)
Q Consensus 160 ~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~---~~~~~~~~~~~~---~~------~~~vgE~~~~~~ 227 (416)
...+|+++|+|++++++++++|++ +||||||||+|.++ +.+||+++...+ ++ .+++||.|+..+
T Consensus 310 ---gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~Wd~~~ 385 (1221)
T PRK14510 310 ---GNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEVWDDGL 385 (1221)
T ss_pred ---CCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEecccCCC
Confidence 234677799999999999999997 99999999999999 888988765543 33 245999998531
Q ss_pred --CCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcCc---hhhhhhhcCCCCCccc---cccCcceecc
Q 014892 228 --YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG---WWPSRAVTFL 299 (416)
Q Consensus 228 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~---~~p~~~~~fl 299 (416)
++.+. + ....+.+|++++..++..+.|+ ..++.+.+......+. ..|..++||+
T Consensus 386 ~~~~~g~--------------f----~~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~iNfi 447 (1221)
T PRK14510 386 GGYQYGK--------------F----PQYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRSINFI 447 (1221)
T ss_pred CccccCC--------------C----CcceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccceEEE
Confidence 11100 0 0112568888888988887654 2334443332212111 2345789999
Q ss_pred cCCCCCCCCCCCCC--------------------------------------ChhhHHHHHHHHhcCCCeeEEecCCcCC
Q 014892 300 DNHDTGSTQAHWPF--------------------------------------PSNHIMEGYAYILMHPGIPSVFYDHFYD 341 (416)
Q Consensus 300 ~nHD~~R~~~~~~~--------------------------------------~~~~~~~a~a~llt~pGiP~Iy~G~E~g 341 (416)
+|||+.|+.+.+.. ..+++++|++++||+|||||||||||+|
T Consensus 448 ~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~GdE~g 527 (1221)
T PRK14510 448 TAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYGDEAG 527 (1221)
T ss_pred eeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecchhcc
Confidence 99999885432110 1235889999999999999999999986
Q ss_pred --------------------Cc---hhHHHHHHHHHHHHHhCcccCCCCeEEEE
Q 014892 342 --------------------WG---DSIHNQIVKLMDVRRQQDIHSRSSIKILE 372 (416)
Q Consensus 342 --------------------w~---~~l~~~~~~Li~lR~~~~~l~~G~~~~~~ 372 (416)
|+ .++++++|+||+|||++|+|+.|++....
T Consensus 528 ~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~ 581 (1221)
T PRK14510 528 RSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSGT 581 (1221)
T ss_pred cccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccCc
Confidence 33 37999999999999999999999887653
No 20
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=6.2e-49 Score=406.26 Aligned_cols=355 Identities=14% Similarity=0.161 Sum_probs=246.6
Q ss_pred ccCceeEEEeeecCCCCC-----CcHHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHH
Q 014892 25 RNGREILFQGFNWESCKH-----DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLK 96 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~~-----G~~~gi~~~-LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~ 96 (416)
...+.+||.+-..+++.+ +++++++++ |||||+||||+||||||++++ ++|||+|++||+++|+||+++|||
T Consensus 243 ~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk 322 (730)
T PRK12568 243 VPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFA 322 (730)
T ss_pred CCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHH
Confidence 345567999888766542 489999998 599999999999999999876 479999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHH
Q 014892 97 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKD 176 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~ 176 (416)
+||++||++||+||||+|+||++.+..+ ...|++.....+ .++.. ....+|..+ .+|+.+|+||++
T Consensus 323 ~lV~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~~Ye~-------~d~~~--g~~~~W~~~-~~N~~~peVr~~ 388 (730)
T PRK12568 323 QFVDACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAALYEH-------ADPRE--GMHRDWNTL-IYNYGRPEVTAY 388 (730)
T ss_pred HHHHHHHHCCCEEEEEeccccCCccccc----cccCCCcccccc-------CCCcC--CccCCCCCe-ecccCCHHHHHH
Confidence 9999999999999999999999986431 112222111111 11000 011123333 589999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecccCCCc------------------------HHHHHHHHHhcC---C-ceEEEcccCCCCC
Q 014892 177 IIAWLRWLRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNY 228 (416)
Q Consensus 177 l~~~~~~w~~~~gvDGfRlD~a~~~~------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~ 228 (416)
|++++++|++++||||||+|+++.|. .+||+++.+.++ | .++|||.+..-+
T Consensus 389 li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p- 467 (730)
T PRK12568 389 LLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWP- 467 (730)
T ss_pred HHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc-
Confidence 99999999999999999999886541 369999887765 5 789999653211
Q ss_pred CCCCCCCccchhhHhHhhhhc-cCCCcccccCchhhHHHHHHhcCc-hhhhhhhcCCCCCccccccCcceecccCCCCC-
Q 014892 229 NSHGLDYNQDSHRQRIINWID-GTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG- 305 (416)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~fdf~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~- 305 (416)
.+..-.. ++-+++..++......+.+.+..+ ..+....-.-..+++ +.-...+.+..|||+.
T Consensus 468 --------------~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~-y~~~e~fvlp~SHDEvv 532 (730)
T PRK12568 468 --------------GVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLV-YAFSERFVLPLSHDEVV 532 (730)
T ss_pred --------------cccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhh-hhhhccEeccCCCcccc
Confidence 1111111 112466667776666666665432 222111100000111 1112334567899993
Q ss_pred ----CCCCCCCCCh----hhHHHHHHHHhcCCCeeEEecCCcCC------------Cc-------hhHHHHHHHHHHHHH
Q 014892 306 ----STQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRR 358 (416)
Q Consensus 306 ----R~~~~~~~~~----~~~~~a~a~llt~pGiP~Iy~G~E~g------------w~-------~~l~~~~~~Li~lR~ 358 (416)
++......+. ..+|+.+++|+|.||.|+||+|+||| |. ..+.+++|+|++||+
T Consensus 533 hgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dLn~ly~ 612 (730)
T PRK12568 533 HGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDLNAALR 612 (730)
T ss_pred cCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHHHHHHH
Confidence 4444444333 24788999999999999999999986 32 258899999999999
Q ss_pred hCcccCCCC-----eEEEEec---CCEEEEEE-C-----CEEEEEEcCCCC--------CCCCCCcEEeeeCC
Q 014892 359 QQDIHSRSS-----IKILEAQ---SNLYSAII-G-----DKVCMKIGDGSW--------CPAGKEWTLATSGH 409 (416)
Q Consensus 359 ~~~~l~~G~-----~~~~~~~---~~~~~~~R-~-----~~~lvvinn~~~--------~~~~~~~~~~ls~~ 409 (416)
++|+|..++ ++.+..+ ++|++|.| + +.++||+|.+.. .|..|.|+..++..
T Consensus 613 ~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~eilNsd 685 (730)
T PRK12568 613 RTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWREILNTD 685 (730)
T ss_pred hChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEEEEEcCc
Confidence 999997653 4445433 46999988 2 337888888653 36678899988754
No 21
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=9e-49 Score=420.68 Aligned_cols=344 Identities=17% Similarity=0.277 Sum_probs=243.2
Q ss_pred cCceeEEEeeecCCCC-----------CCcHHHHHhhhhhHHHcCCCEEEeCCCCCC-------------------CC-C
Q 014892 26 NGREILFQGFNWESCK-----------HDWWRNLERKVPDISKSGFTSVWLPPATHS-------------------FA-P 74 (416)
Q Consensus 26 ~~~~~~~q~f~~~~~~-----------~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~-------------------~~-~ 74 (416)
..+.|||++..++++. .|+|+||+++|||||+||||+||||||++. .. +
T Consensus 449 ~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~yn 528 (1111)
T TIGR02102 449 REDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYN 528 (1111)
T ss_pred ccceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccc
Confidence 4578999999998763 399999999999999999999999999862 12 3
Q ss_pred CCcccccCCCCCCCCCC--------HHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCC--CcccccCCCCCCCCCCce
Q 014892 75 EGYLPQNLYSLNSSYGS--------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG--GKYNRYDGIPLSWDEHAV 144 (416)
Q Consensus 75 ~GY~~~d~~~id~~~Gt--------~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~--~~~~~f~~~~~~~~~~~~ 144 (416)
|||+|.+||+++++||+ .+|||+||++||++||+||||+|+||++..++... +.|+.+. +
T Consensus 529 WGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~-------~--- 598 (1111)
T TIGR02102 529 WGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFM-------D--- 598 (1111)
T ss_pred cCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEee-------C---
Confidence 99999999999999998 48999999999999999999999999998654211 1111100 0
Q ss_pred ecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhc---CC-ceEEE
Q 014892 145 TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVG 220 (416)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~---~~-~~~vg 220 (416)
.++... . ..+..+++.++|+||++|++++++|+++|||||||||++.+++.+++..+..++ +| .+++|
T Consensus 599 ---~~G~~~---~--~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~~~liG 670 (1111)
T TIGR02102 599 ---ADGTPR---T--SFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIG 670 (1111)
T ss_pred ---CCCCcc---c--ccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcCEEEEE
Confidence 011110 0 012457999999999999999999999999999999999999999998887664 34 68999
Q ss_pred cccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHh---------cCc---hhhhhhhcCCCCCcc
Q 014892 221 EYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV---------KGQ---FWRLRDAQGKPPGVM 288 (416)
Q Consensus 221 E~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~---------~~~---~~~~~~~~~~~~~~~ 288 (416)
|.|+... +...+... .....++... ...+.|+..++..++..+ .|. ...+...+...+..+
T Consensus 671 E~W~~~~---g~~~~~~~---~~~~~~~~~~-~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~ 743 (1111)
T TIGR02102 671 EGWRTYA---GDEGDPVQ---AADQDWMKYT-ETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNF 743 (1111)
T ss_pred ecccccC---CCCccccc---ccchhhHhcC-CcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCcccc
Confidence 9997511 00000000 0011222221 125678877777777432 122 122333332221111
Q ss_pred -ccccCcceecccCCCCCCCCCCCC-----C---C------hhhHHHHHHHHhcCCCeeEEecCCcCC------------
Q 014892 289 -GWWPSRAVTFLDNHDTGSTQAHWP-----F---P------SNHIMEGYAYILMHPGIPSVFYDHFYD------------ 341 (416)
Q Consensus 289 -~~~p~~~~~fl~nHD~~R~~~~~~-----~---~------~~~~~~a~a~llt~pGiP~Iy~G~E~g------------ 341 (416)
...|.+.|+|++|||+.++...+. . . ..|.++|.+++|+++|||||++||||+
T Consensus 744 ~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gnnn~y~~ 823 (1111)
T TIGR02102 744 EADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFRNPDYRT 823 (1111)
T ss_pred ccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCCcccccc
Confidence 236789999999999998733211 0 1 136789999999999999999999962
Q ss_pred ------------------------------------------Cc-----------hhHHHHHHHHHHHHHhCcccCCCCe
Q 014892 342 ------------------------------------------WG-----------DSIHNQIVKLMDVRRQQDIHSRSSI 368 (416)
Q Consensus 342 ------------------------------------------w~-----------~~l~~~~~~Li~lR~~~~~l~~G~~ 368 (416)
|+ .++++++|.||+|||++|+|+.++.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~fr~~~~ 903 (1111)
T TIGR02102 824 PVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDAFRLGSK 903 (1111)
T ss_pred cccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCccccccch
Confidence 11 1578999999999999999987754
Q ss_pred E-------EEEec--------CCEEEEEE----CCEEEEEEcCCC
Q 014892 369 K-------ILEAQ--------SNLYSAII----GDKVCMKIGDGS 394 (416)
Q Consensus 369 ~-------~~~~~--------~~~~~~~R----~~~~lvvinn~~ 394 (416)
. ++... +.+++|.. ++.++|++|...
T Consensus 904 ~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~ 948 (1111)
T TIGR02102 904 ALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADD 948 (1111)
T ss_pred hhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCC
Confidence 2 32221 45788865 356777788754
No 22
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=9.3e-49 Score=390.43 Aligned_cols=330 Identities=15% Similarity=0.154 Sum_probs=238.5
Q ss_pred eeEEEeeecCCCCCCcHHHHHhhhh-hHHHcCCCEEEeCCCC-CCC-CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC
Q 014892 29 EILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPAT-HSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH 105 (416)
Q Consensus 29 ~~~~q~f~~~~~~~G~~~gi~~~Ld-yLk~LGv~~I~L~Pi~-~~~-~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~ 105 (416)
.|++-.|. ++-.+|||+||+++|| ||++| |++|||+|+| +++ +++||+|.||++|||+|||++||++|++
T Consensus 4 ~~~litY~-Ds~~~GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VDP~fGt~eDf~~L~~----- 76 (495)
T PRK13840 4 KVQLITYA-DRLGDGGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVDPRLGDWDDVKALGK----- 76 (495)
T ss_pred ceEEEEec-cCCCCCCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcCcccCCHHHHHHHHh-----
Confidence 56666666 4445699999999999 59999 9999999999 444 4799999999999999999999999995
Q ss_pred CCEEEEEEccccCcCCCCCCC--------Cccc----ccCC------CCCCCCCC------c---eecCCCCCCCCCCCC
Q 014892 106 KVRAMADIVINHRVGTTQGHG--------GKYN----RYDG------IPLSWDEH------A---VTSCTGGLGNGSTGD 158 (416)
Q Consensus 106 Gi~VilD~V~NH~~~~~~~~~--------~~~~----~f~~------~~~~~~~~------~---~~~~~~~~~~~~~~~ 158 (416)
||+||+|+|+||+|..|+|++ +.|. ++.. .+.+|..- . ...+.++........
T Consensus 77 giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~t 156 (495)
T PRK13840 77 THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTT 156 (495)
T ss_pred CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEecc
Confidence 999999999999999999853 2232 1111 01111100 0 000111111111122
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc-------------HHHHHHHHHhcCC--ceEEEccc
Q 014892 159 NFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------AKYVKEYIEGARP--IFSVGEYW 223 (416)
Q Consensus 159 ~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~-------------~~~~~~~~~~~~~--~~~vgE~~ 223 (416)
+...+||||++||+|+++|++++++|+ +.||||||+||+.++. .+||++++..++. ..+++|++
T Consensus 157 F~~~QpDLN~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~ 235 (495)
T PRK13840 157 FTPQQIDIDVHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEVLVEIH 235 (495)
T ss_pred CCcccceeCCCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCc
Confidence 346899999999999999999999999 8899999999997543 3488888776652 56889987
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHh-cCchhhhhhhcCCCCCccccccCcceecccCC
Q 014892 224 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNH 302 (416)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nH 302 (416)
.... . ..+ . .++.+++|||++...+..++ .++...+.+.+.. .|..++|||.||
T Consensus 236 ~y~~----------~--~~~---~---~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~-------~p~~~~n~L~~H 290 (495)
T PRK13840 236 SYYK----------T--QIE---I---AKKVDRVYDFALPPLILHTLFTGDVEALAHWLEI-------RPRNAVTVLDTH 290 (495)
T ss_pred cccC----------c--ccc---c---cccccEEecchhhHHHHHHHHhCCchHHHHHHHh-------CCCccEEeeecC
Confidence 5310 0 000 0 12578999999998888876 5665555544321 366668999999
Q ss_pred CCCCC----------CC--------------------------------------------CCCCChhhHHHHHHHHhcC
Q 014892 303 DTGST----------QA--------------------------------------------HWPFPSNHIMEGYAYILMH 328 (416)
Q Consensus 303 D~~R~----------~~--------------------------------------------~~~~~~~~~~~a~a~llt~ 328 (416)
|.-.+ .. .+..+.+++.+|.+++|++
T Consensus 291 DgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~ 370 (495)
T PRK13840 291 DGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFA 370 (495)
T ss_pred CCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcC
Confidence 98665 11 0111234789999999999
Q ss_pred CCeeEEecCCcCCCc------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEE
Q 014892 329 PGIPSVFYDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLY 378 (416)
Q Consensus 329 pGiP~Iy~G~E~gw~------------------------------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~~ 378 (416)
||||.||||+|+|-. +++++.+++||++|+++|++ .|+++....+++.+
T Consensus 371 ~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~~~~~~~ 449 (495)
T PRK13840 371 PGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAADGDTSL 449 (495)
T ss_pred CCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEecCCCCeE
Confidence 999999999998631 36889999999999999999 68888776676777
Q ss_pred EEEE---CCEEEEEEcC
Q 014892 379 SAII---GDKVCMKIGD 392 (416)
Q Consensus 379 ~~~R---~~~~lvvinn 392 (416)
+.++ .....+.+|.
T Consensus 450 ~~~~~~~~~~~~~~~~~ 466 (495)
T PRK13840 450 TLSWTAGDSSASLTLDF 466 (495)
T ss_pred EEEEecCCceEEEEEEc
Confidence 7765 2344555554
No 23
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=2.3e-48 Score=385.40 Aligned_cols=333 Identities=17% Similarity=0.148 Sum_probs=238.3
Q ss_pred eeEEEeeecCCCC-CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCC
Q 014892 29 EILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 107 (416)
Q Consensus 29 ~~~~q~f~~~~~~-~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi 107 (416)
.|++..|.-.... -|||+|++++ ||++ ||++|||+|+|+++++|||+|.||++|||+|||++||++|+++ |
T Consensus 2 ~v~lity~Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VDP~~Gt~~Df~~L~~~-----~ 73 (470)
T TIGR03852 2 KAMLITYADSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVDPAFGDWSDVEALSEK-----Y 73 (470)
T ss_pred CceEEEecCCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeCcccCCHHHHHHHHHh-----h
Confidence 4566666643322 2688888888 9999 7999999999999999999999999999999999999999998 6
Q ss_pred EEEEEEccccCcCCCCCCC--------Ccccc-cC-------CC-CCCCCCCcee-----------cCCCCCCCCCCCCC
Q 014892 108 RAMADIVINHRVGTTQGHG--------GKYNR-YD-------GI-PLSWDEHAVT-----------SCTGGLGNGSTGDN 159 (416)
Q Consensus 108 ~VilD~V~NH~~~~~~~~~--------~~~~~-f~-------~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~ 159 (416)
+||+|+|+||+|..|+|++ +.|.. |- +. +.+.+...+. .+.++........+
T Consensus 74 kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF 153 (470)
T TIGR03852 74 YLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTF 153 (470)
T ss_pred hHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccC
Confidence 9999999999999999753 23321 11 00 0000000000 01111111122233
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc-----------H---HHHHHHHHhcC--CceEEEccc
Q 014892 160 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----------A---KYVKEYIEGAR--PIFSVGEYW 223 (416)
Q Consensus 160 ~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~-----------~---~~~~~~~~~~~--~~~~vgE~~ 223 (416)
...+||||+.||+|++++.+++++|+ +.||||||+||+.++. + ++++.+++-+. ...+++|++
T Consensus 154 ~~~QpDLN~~np~v~e~i~~il~fwl-~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~ 232 (470)
T TIGR03852 154 GEEQIDLDVTSETTKRFIRDNLENLA-EHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEILPEIH 232 (470)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHH-HcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEEeHhh
Confidence 47899999999999999999999999 8999999999994433 2 35556655443 378999987
Q ss_pred CCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHh-cCchhhhhhhcCCCCCccccccCcceecccCC
Q 014892 224 DSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFWRLRDAQGKPPGVMGWWPSRAVTFLDNH 302 (416)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nH 302 (416)
..-.+ ....+++..++|+|++...+..++ .++...+.+.+. ..|...+||++||
T Consensus 233 ~~~~~------------------~~~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~-------~~p~~~~nfL~sH 287 (470)
T TIGR03852 233 EHYTI------------------QFKIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLR-------KSPMKQFTTLDTH 287 (470)
T ss_pred hhccc------------------ccccccceeEEccCccchhhHHHhhccCHHHHHHHHH-------hCcccceEEeecC
Confidence 43111 001123567899999987777776 666666665543 2345557999999
Q ss_pred CCCCC------C-------------------C----------------------CCCCChhhHHHHHHHHhcCCCeeEEe
Q 014892 303 DTGST------Q-------------------A----------------------HWPFPSNHIMEGYAYILMHPGIPSVF 335 (416)
Q Consensus 303 D~~R~------~-------------------~----------------------~~~~~~~~~~~a~a~llt~pGiP~Iy 335 (416)
|.--+ . + .+..+.+++.+|.|++|++||||+||
T Consensus 288 Dgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpGiP~iY 367 (470)
T TIGR03852 288 DGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPGIPQVY 367 (470)
T ss_pred CCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCCCceEE
Confidence 98321 0 0 12234567899999999999999999
Q ss_pred cCCcCCCc------------------------------hhHHHHHHHHHHHHHhCcccCC-CCeEEEEecCCEEEEEE--
Q 014892 336 YDHFYDWG------------------------------DSIHNQIVKLMDVRRQQDIHSR-SSIKILEAQSNLYSAII-- 382 (416)
Q Consensus 336 ~G~E~gw~------------------------------~~l~~~~~~Li~lR~~~~~l~~-G~~~~~~~~~~~~~~~R-- 382 (416)
||+|+|.. .++.+.+.+||++|+++|+++- |+++....++.++++.|
T Consensus 368 y~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~~~r~~ 447 (470)
T TIGR03852 368 YVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIEIVRTN 447 (470)
T ss_pred echhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEEEEEEc
Confidence 99998742 2567778889999999999985 99987777888999987
Q ss_pred ---CCEEEEEEcCCCC
Q 014892 383 ---GDKVCMKIGDGSW 395 (416)
Q Consensus 383 ---~~~~lvvinn~~~ 395 (416)
++++.+++|-++.
T Consensus 448 ~~~~~~~~~~~n~~~~ 463 (470)
T TIGR03852 448 KDGGNKAILTANLKTK 463 (470)
T ss_pred CCCCceEEEEEecCCC
Confidence 2345666665543
No 24
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.2e-47 Score=397.10 Aligned_cols=349 Identities=14% Similarity=0.152 Sum_probs=235.2
Q ss_pred CceeEEEeeecCCCCC---CcHHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHH
Q 014892 27 GREILFQGFNWESCKH---DWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 100 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~---G~~~gi~~~-LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~ 100 (416)
.+.+||++....+..+ |+|++++++ |||||+||||+||||||++++ .+|||++++||+|+++|||++|||+||+
T Consensus 394 ~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd 473 (897)
T PLN02960 394 KSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVD 473 (897)
T ss_pred CCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHH
Confidence 4578999999876554 599999976 999999999999999999876 4699999999999999999999999999
Q ss_pred HHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHH
Q 014892 101 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 179 (416)
Q Consensus 101 ~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~ 179 (416)
+||++||+||||+|+||++.+++..- ..|++.. ..+... ..+. .. ..+.+.+|+.+|+||++|++
T Consensus 474 ~aH~~GI~VILDvV~NH~~~d~~~~L---~~FDG~~~~Yf~~~-----~~g~-----~~-~WG~~~fNy~~~eVr~fLls 539 (897)
T PLN02960 474 EAHGLGLLVFLDIVHSYAAADEMVGL---SLFDGSNDCYFHSG-----KRGH-----HK-RWGTRMFKYGDHEVLHFLLS 539 (897)
T ss_pred HHHHCCCEEEEEecccccCCccccch---hhcCCCccceeecC-----CCCc-----cC-CCCCcccCCCCHHHHHHHHH
Confidence 99999999999999999999753211 1122211 011100 0000 01 12346789999999999999
Q ss_pred HHHHHHHhcCCCeEEecccCCC-------------------------cHHHHHHHHHhcC---C-ceEEEcccCCCCCCC
Q 014892 180 WLRWLRNTVGFQDFRFDFARGY-------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNS 230 (416)
Q Consensus 180 ~~~~w~~~~gvDGfRlD~a~~~-------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~ 230 (416)
++++|+++|||||||+|++..| ...|++++.+.++ | .++|||-....+
T Consensus 540 na~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P--- 616 (897)
T PLN02960 540 NLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYP--- 616 (897)
T ss_pred HHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCC---
Confidence 9999999999999999998652 1247777766553 4 789999654311
Q ss_pred CCCCCccchhhHhHhhhhccC-CCcccccCchhhHHHHHHhcCch---hhhhhhcCCCCCcc--ccccCcceecccCCCC
Q 014892 231 HGLDYNQDSHRQRIINWIDGT-GQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM--GWWPSRAVTFLDNHDT 304 (416)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~fdf~~~~~l~~~~~~~~---~~~~~~~~~~~~~~--~~~p~~~~~fl~nHD~ 304 (416)
.|..-...+ -+++...++.....+..++.... +....... .+. ...+.+.+.|++|||+
T Consensus 617 ------------~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~---s~~~~~~~~~~~v~Y~EnHDQ 681 (897)
T PLN02960 617 ------------GLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVS---TLVKNKENADKMLSYAENHNQ 681 (897)
T ss_pred ------------CccccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEe---eeccCcCCcceEEEEecCcCc
Confidence 111111111 12444444444444444442211 11111110 111 1234577999999999
Q ss_pred C-----CCCCCCCCC-------hh----------hHHHHHHHHhcCCCeeEEecCCcCCC--------------------
Q 014892 305 G-----STQAHWPFP-------SN----------HIMEGYAYILMHPGIPSVFYDHFYDW-------------------- 342 (416)
Q Consensus 305 ~-----R~~~~~~~~-------~~----------~~~~a~a~llt~pGiP~Iy~G~E~gw-------------------- 342 (416)
. ++...+... .. .+..+++++++ ||+|++|||+|||-
T Consensus 682 Vv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~L 760 (897)
T PLN02960 682 SISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSLANR 760 (897)
T ss_pred cccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccccccccC
Confidence 2 222222111 01 11123455554 89999999999752
Q ss_pred --c-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEec--CCEEEEEECCEEEEEEcCCCC---------CCCCCCc
Q 014892 343 --G-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQ--SNLYSAIIGDKVCMKIGDGSW---------CPAGKEW 402 (416)
Q Consensus 343 --~-------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~--~~~~~~~R~~~~lvvinn~~~---------~~~~~~~ 402 (416)
+ ..+.+++|+|++||+++|+|+.|.......+ +.+++|.|+ .+++|+|.+.. .|..|.|
T Consensus 761 dW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R~-~llvV~NFsp~~~~~~Y~vgvP~~G~y 839 (897)
T PLN02960 761 RWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTRG-PLLFAFNFHPTNSYEEYEVGVEEAGEY 839 (897)
T ss_pred CcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEeC-CeEEEEeCCCCCcCcCceECCCCCCcE
Confidence 1 2588899999999999999998876655443 469999995 58888898642 1345789
Q ss_pred EEeeeCC
Q 014892 403 TLATSGH 409 (416)
Q Consensus 403 ~~~ls~~ 409 (416)
+.+|+..
T Consensus 840 ~eilNSD 846 (897)
T PLN02960 840 ELILNTD 846 (897)
T ss_pred EEEEeCc
Confidence 8888643
No 25
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.3e-47 Score=414.13 Aligned_cols=353 Identities=15% Similarity=0.143 Sum_probs=239.6
Q ss_pred ceeEEEeeecCCCCCCcHHHHHhh-hhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 014892 28 REILFQGFNWESCKHDWWRNLERK-VPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 104 (416)
Q Consensus 28 ~~~~~q~f~~~~~~~G~~~gi~~~-LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~ 104 (416)
..+||++-..+++..++|++++++ |||||+||||+||||||++++ .+|||++++||+++++|||++|||+||++||+
T Consensus 747 p~~IYEvHvgsf~~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~ 826 (1224)
T PRK14705 747 PMSVYEVHLGSWRLGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQ 826 (1224)
T ss_pred CcEEEEEEecccccCCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHH
Confidence 468999999888888999999988 599999999999999999876 57999999999999999999999999999999
Q ss_pred CCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 014892 105 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 184 (416)
Q Consensus 105 ~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w 184 (416)
+||+||||+|+||++.+.... ..|++.+...+. ++.. .....|. ...+|+.+++||++|++++++|
T Consensus 827 ~GI~VILD~V~nH~~~d~~~l----~~fdg~~~y~~~-------d~~~--g~~~~Wg-~~~fn~~~~eVr~fli~~a~~W 892 (1224)
T PRK14705 827 AGIGVLLDWVPAHFPKDSWAL----AQFDGQPLYEHA-------DPAL--GEHPDWG-TLIFDFGRTEVRNFLVANALYW 892 (1224)
T ss_pred CCCEEEEEeccccCCcchhhh----hhcCCCcccccC-------Cccc--CCCCCCC-CceecCCCHHHHHHHHHHHHHH
Confidence 999999999999998764311 112221111111 1100 0011122 3469999999999999999999
Q ss_pred HHhcCCCeEEecccCCC------------------------cHHHHHHHHHhcC---C-ceEEEcccCCCCCCCCCCCCc
Q 014892 185 RNTVGFQDFRFDFARGY------------------------SAKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLDYN 236 (416)
Q Consensus 185 ~~~~gvDGfRlD~a~~~------------------------~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~~~ 236 (416)
+++|||||||+|++..| ..+||+++.+.++ | .++|||.+...+
T Consensus 893 l~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p--------- 963 (1224)
T PRK14705 893 LDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFP--------- 963 (1224)
T ss_pred HHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCc---------
Confidence 99999999999998776 3569999887764 4 789999665311
Q ss_pred cchhhHhHhhhhcc-CCCcccccCchhhHHHHHHhc-CchhhhhhhcCCCCCccccccCcceecccCCCCCC-C----CC
Q 014892 237 QDSHRQRIINWIDG-TGQLSAAFDFTTKGILQEAVK-GQFWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTGS-T----QA 309 (416)
Q Consensus 237 ~~~~~~~l~~~~~~-~~~~~~~fdf~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R-~----~~ 309 (416)
.+..-... +-+++..++...+..+.+.+. ....+......-..++. +.....+.+..|||+.. . ..
T Consensus 964 ------~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~-ya~~e~fvl~~SHDevvhgk~sl~~ 1036 (1224)
T PRK14705 964 ------GVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLV-YAFTENFLLPISHDEVVHGKGSMLR 1036 (1224)
T ss_pred ------CccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHH-HHhhcCEecccccccccccchhHHH
Confidence 01111111 112334444444443333332 22211111000000000 00112233456899853 1 11
Q ss_pred CCCCCh----hhHHHHHHHHhcCCCeeEEecCCcCC------------Cc-------hhHHHHHHHHHHHHHhCcccCCC
Q 014892 310 HWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD------------WG-------DSIHNQIVKLMDVRRQQDIHSRS 366 (416)
Q Consensus 310 ~~~~~~----~~~~~a~a~llt~pGiP~Iy~G~E~g------------w~-------~~l~~~~~~Li~lR~~~~~l~~G 366 (416)
....+. ..+++++++++++||+|+||+|+||| |. ..+..++|+|++||+++|+|..+
T Consensus 1037 km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~ 1116 (1224)
T PRK14705 1037 KMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQR 1116 (1224)
T ss_pred hCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhcc
Confidence 222221 24688999999999999999999986 22 25788999999999999999754
Q ss_pred C-----eEEEEe---cCCEEEEEE----CCEEEEEEcCCCC--------CCCCCCcEEeeeCCc
Q 014892 367 S-----IKILEA---QSNLYSAII----GDKVCMKIGDGSW--------CPAGKEWTLATSGHK 410 (416)
Q Consensus 367 ~-----~~~~~~---~~~~~~~~R----~~~~lvvinn~~~--------~~~~~~~~~~ls~~~ 410 (416)
+ ++.+.. ++++++|.| ++.+++|+|.+.. .|..|.|+.+++...
T Consensus 1117 d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~eilnsd~ 1180 (1224)
T PRK14705 1117 DNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWTEVLNTDH 1180 (1224)
T ss_pred CCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEEEEEeCch
Confidence 3 455532 356999988 2457888888542 245678998887543
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=2.5e-44 Score=372.70 Aligned_cols=350 Identities=15% Similarity=0.198 Sum_probs=235.4
Q ss_pred CceeEEEeeecCCCCC---CcHHHHH-hhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHH
Q 014892 27 GREILFQGFNWESCKH---DWWRNLE-RKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLH 100 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~---G~~~gi~-~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~ 100 (416)
.+.+||.+-...+..+ |+++++. ++|+|||+||||+||||||++++ .+|||+++|||+++++|||++|||+||+
T Consensus 228 ~~~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd 307 (758)
T PLN02447 228 AALRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLID 307 (758)
T ss_pred CCCEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHH
Confidence 4568999888765443 6999975 56999999999999999999987 4799999999999999999999999999
Q ss_pred HHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHH
Q 014892 101 KMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIA 179 (416)
Q Consensus 101 ~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~ 179 (416)
+||++||+||||+|+||++.++.. ....|++.. ..|+... .+. . ...+...+|+.+++||++|++
T Consensus 308 ~aH~~GI~VilDvV~nH~~~~~~~---gl~~fDg~~~~Yf~~~~-----~g~-----~-~~w~~~~~N~~~~eVr~fLl~ 373 (758)
T PLN02447 308 KAHSLGLRVLMDVVHSHASKNTLD---GLNGFDGTDGSYFHSGP-----RGY-----H-WLWDSRLFNYGNWEVLRFLLS 373 (758)
T ss_pred HHHHCCCEEEEEeccccccccccc---cccccCCCCccccccCC-----CCC-----c-CcCCCceecCCCHHHHHHHHH
Confidence 999999999999999999986531 011222211 1111110 000 0 111234699999999999999
Q ss_pred HHHHHHHhcCCCeEEecccCCCc--------------------------HHHHHHHHHhcC---C-ceEEEcccCCCCCC
Q 014892 180 WLRWLRNTVGFQDFRFDFARGYS--------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYN 229 (416)
Q Consensus 180 ~~~~w~~~~gvDGfRlD~a~~~~--------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~ 229 (416)
++++|+++|||||||+|+|++|- ..|++.+.+.++ | .++|||.+.+.+
T Consensus 374 ~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p-- 451 (758)
T PLN02447 374 NLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMP-- 451 (758)
T ss_pred HHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCC--
Confidence 99999999999999999998762 236666665543 4 788999765421
Q ss_pred CCCCCCccchhhHhHhhhhccCC-CcccccCchhhHHHHHHhcCc---hhhhhhhcCCCCCccc-cccCcceecccCCCC
Q 014892 230 SHGLDYNQDSHRQRIINWIDGTG-QLSAAFDFTTKGILQEAVKGQ---FWRLRDAQGKPPGVMG-WWPSRAVTFLDNHDT 304 (416)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~fdf~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~-~~p~~~~~fl~nHD~ 304 (416)
.+......+| +++.-++........+.++.. .+.+-.... .+.. ....+.|.|.+|||+
T Consensus 452 -------------~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~~---sl~~r~~~E~~I~y~eSHDe 515 (758)
T PLN02447 452 -------------TLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIVH---TLTNRRYTEKCVAYAESHDQ 515 (758)
T ss_pred -------------CccccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHHH---HHhcccccCceEeccCCcCe
Confidence 1111111111 222333333344444444221 111111100 1111 233477889999999
Q ss_pred CCCC--C------------CCCCCh------hh----HHHHHHHHhcCCCe-eEEecCCcCCC-----------------
Q 014892 305 GSTQ--A------------HWPFPS------NH----IMEGYAYILMHPGI-PSVFYDHFYDW----------------- 342 (416)
Q Consensus 305 ~R~~--~------------~~~~~~------~~----~~~a~a~llt~pGi-P~Iy~G~E~gw----------------- 342 (416)
.... + .+.... .| .|+..++++++||. +++|+|.|||-
T Consensus 516 vv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~ 595 (758)
T PLN02447 516 ALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDK 595 (758)
T ss_pred eecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCccc
Confidence 7531 1 111100 11 25566789999999 79999999862
Q ss_pred -----c---------hhHHHHHHHHHHHHHhCcccCCCCeEEEE--ecCCEEEEEECCEEEEEEcCCCC---------CC
Q 014892 343 -----G---------DSIHNQIVKLMDVRRQQDIHSRSSIKILE--AQSNLYSAIIGDKVCMKIGDGSW---------CP 397 (416)
Q Consensus 343 -----~---------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~--~~~~~~~~~R~~~~lvvinn~~~---------~~ 397 (416)
+ +.+.++.|.|++|++++|+|..|...+.. .++.|++|.|++ +|+|+|.... .|
T Consensus 596 ~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~~~i~~~d~~~~Viaf~R~~-ll~V~NF~p~~s~~~Y~igvp 674 (758)
T PLN02447 596 CRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEHQYVSRKDEGDKVIVFERGD-LVFVFNFHPTNSYSDYRVGCD 674 (758)
T ss_pred ccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCCceeeeecCCCCEEEEEeCC-eEEEEeCCCCCCCCCcEECCC
Confidence 1 14678999999999999999876544433 335799999974 8888888642 24
Q ss_pred CCCCcEEeeeCC
Q 014892 398 AGKEWTLATSGH 409 (416)
Q Consensus 398 ~~~~~~~~ls~~ 409 (416)
..|.|+.+|+..
T Consensus 675 ~~G~y~~ilnSD 686 (758)
T PLN02447 675 KPGKYKIVLDSD 686 (758)
T ss_pred CCCeEEEEECCC
Confidence 567888888643
No 27
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-45 Score=375.29 Aligned_cols=355 Identities=17% Similarity=0.235 Sum_probs=222.9
Q ss_pred eeEEEeeecCCCC-----------CCcHHHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCcccccCCCCCCCCCCHHHHH
Q 014892 29 EILFQGFNWESCK-----------HDWWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLPQNLYSLNSSYGSEHLLK 96 (416)
Q Consensus 29 ~~~~q~f~~~~~~-----------~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~-~~~~GY~~~d~~~id~~~Gt~~d~~ 96 (416)
++|||+|-..+.. .|||+||+++||||++|||++|||+||+++ ..+|||++.||+.|+|+|||++||+
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~ 80 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFK 80 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHH
Confidence 3688888865531 289999999999999999999999999999 6799999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccC----CCCCCCCCCc---------eecC-CCCCC-----CCCCC
Q 014892 97 ALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD----GIPLSWDEHA---------VTSC-TGGLG-----NGSTG 157 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~----~~~~~~~~~~---------~~~~-~~~~~-----~~~~~ 157 (416)
+||++||++||+||+|+|+||++..|+|+........ ...+.|.+.. .... .+.+. .....
T Consensus 81 ~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (505)
T COG0366 81 ELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLH 160 (505)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEE
Confidence 9999999999999999999999999986431110000 0011122110 0000 01111 11122
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcH-----------HHHHHHHHhcCC----ceEEEcc
Q 014892 158 DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSA-----------KYVKEYIEGARP----IFSVGEY 222 (416)
Q Consensus 158 ~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~-----------~~~~~~~~~~~~----~~~vgE~ 222 (416)
.....+||||+.||+||+.+.+++++|+ ++||||||+|+++++++ .++..+.+.+++ .+..+|.
T Consensus 161 ~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (505)
T COG0366 161 LFSSEQPDLNWENPEVREELLDVVKFWL-DKGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEA 239 (505)
T ss_pred ecCCCCCCcCCCCHHHHHHHHHHHHHHH-HcCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcCcc
Confidence 2347889999999999999999999999 69999999999999998 556666555431 1111222
Q ss_pred cCCCC-CCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHh-cCch---hhhhhhcCCCCCccccccCccee
Q 014892 223 WDSCN-YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQF---WRLRDAQGKPPGVMGWWPSRAVT 297 (416)
Q Consensus 223 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~-~~~~---~~~~~~~~~~~~~~~~~p~~~~~ 297 (416)
+.... +......+. ..............|++.....-.... .... ......+.. ...........
T Consensus 240 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 309 (505)
T COG0366 240 ITDVGEAPGAVKEDF-------ADNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPL---AVNLNDGWNNL 309 (505)
T ss_pred eeeeeccccccchhh-------hhccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHh---hhccccCchhh
Confidence 22110 000000000 000000000122333332211000000 0001 111111110 00011122345
Q ss_pred cccCCCCCCCCCCCCCCh----hhHHHHHHHHhcCCCeeEEecCCcCC--------------------------------
Q 014892 298 FLDNHDTGSTQAHWPFPS----NHIMEGYAYILMHPGIPSVFYDHFYD-------------------------------- 341 (416)
Q Consensus 298 fl~nHD~~R~~~~~~~~~----~~~~~a~a~llt~pGiP~Iy~G~E~g-------------------------------- 341 (416)
|.+|||++|+.+....+. ...+++.++++++||+|+||||+|.|
T Consensus 310 ~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 389 (505)
T COG0366 310 FLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPM 389 (505)
T ss_pred hhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCc
Confidence 799999999988775443 56788888899999999999999853
Q ss_pred -Cc------------------------------------hhHHHHHHHHHHHHHhC-cccCCCCeEEEEe-cC-CEEEEE
Q 014892 342 -WG------------------------------------DSIHNQIVKLMDVRRQQ-DIHSRSSIKILEA-QS-NLYSAI 381 (416)
Q Consensus 342 -w~------------------------------------~~l~~~~~~Li~lR~~~-~~l~~G~~~~~~~-~~-~~~~~~ 381 (416)
|+ .+++.++++|+++|+++ +.+..|....... ++ .+++|.
T Consensus 390 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (505)
T COG0366 390 PWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFL 469 (505)
T ss_pred CCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEe
Confidence 11 15788999999999999 5556674433333 33 588998
Q ss_pred E--CCE-EEEEEcCCC
Q 014892 382 I--GDK-VCMKIGDGS 394 (416)
Q Consensus 382 R--~~~-~lvvinn~~ 394 (416)
| .++ +++++|.+.
T Consensus 470 ~~~~~~~~~~~~n~~~ 485 (505)
T COG0366 470 RESGGETLLVVNNLSE 485 (505)
T ss_pred cccCCceEEEEEcCCC
Confidence 8 333 455555543
No 28
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3e-43 Score=371.61 Aligned_cols=355 Identities=15% Similarity=0.236 Sum_probs=234.4
Q ss_pred ccCceeEEEeeecCCCC---------CCcHHHHHhh-------hhhHHHcCCCEEEeCCCCCCC----------------
Q 014892 25 RNGREILFQGFNWESCK---------HDWWRNLERK-------VPDISKSGFTSVWLPPATHSF---------------- 72 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~---------~G~~~gi~~~-------LdyLk~LGv~~I~L~Pi~~~~---------------- 72 (416)
...+.+||.+=.++++. .|+|.|++++ |+||++||||+|+|||+|+..
T Consensus 249 ~~~d~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~ 328 (898)
T TIGR02103 249 SFADMVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPF 328 (898)
T ss_pred CCcccEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccch
Confidence 34678999999888752 4899999886 666778899999999998642
Q ss_pred -----------------------------------------------C-CCCcccccCCCCCCCCCCH-------HHHHH
Q 014892 73 -----------------------------------------------A-PEGYLPQNLYSLNSSYGSE-------HLLKA 97 (416)
Q Consensus 73 -----------------------------------------------~-~~GY~~~d~~~id~~~Gt~-------~d~~~ 97 (416)
+ +|||+|..|++++..|++. +|||+
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPegSYatdp~g~~Ri~Efk~ 408 (898)
T TIGR02103 329 SKLCELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPEGSYATDPEGPARIKEFRE 408 (898)
T ss_pred hhhhccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcChhhccCCCCchHHHHHHH
Confidence 1 5999999999999999883 69999
Q ss_pred HHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHH
Q 014892 98 LLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI 177 (416)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l 177 (416)
||++||++||+||||+|+||++..++...+.+....+ ..|+.. ..++... ......+++.++|+||++|
T Consensus 409 mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P--~YY~r~----~~~G~~~-----n~~~~~d~a~e~~~Vrk~i 477 (898)
T TIGR02103 409 MVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVP--GYYHRL----NEDGGVE-----NSTCCSNTATEHRMMAKLI 477 (898)
T ss_pred HHHHHHHCCCEEEEEeecccccccCccCcccccccCc--HhhEee----CCCCCee-----cCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999999987654332221110 011110 0011111 1122357899999999999
Q ss_pred HHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcC---C-ceEEEcccCCCCCC-------CC-------CCCCccch
Q 014892 178 IAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR---P-IFSVGEYWDSCNYN-------SH-------GLDYNQDS 239 (416)
Q Consensus 178 ~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~---~-~~~vgE~~~~~~~~-------~~-------~~~~~~~~ 239 (416)
++++++|+++|||||||||++++++.+||+++.++++ | .+++||.|+..... .. ...++++.
T Consensus 478 iDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~ 557 (898)
T TIGR02103 478 VDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDR 557 (898)
T ss_pred HHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCcccccchhhhhhhhccccCCCCeEEeccc
Confidence 9999999999999999999999999999999988764 4 78999999742110 00 01122222
Q ss_pred hhHhHhhhhccCCCccc--------ccCc-----h----------------hhHHHHHHhcCchh--hhhhh--------
Q 014892 240 HRQRIINWIDGTGQLSA--------AFDF-----T----------------TKGILQEAVKGQFW--RLRDA-------- 280 (416)
Q Consensus 240 ~~~~l~~~~~~~~~~~~--------~fdf-----~----------------~~~~l~~~~~~~~~--~~~~~-------- 280 (416)
.++.|+ +++.+.. .|-- + ....++..+.|+.. .+...
T Consensus 558 ~RDavr----Gg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~ 633 (898)
T TIGR02103 558 LRDAVR----GGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDGALHLADLTRLGMAGNLKDFVLTDHEGKVVTGE 633 (898)
T ss_pred hhhHhc----CCCccccccccccCcceecCcccCCcccccccchhhhhhhhhHHHHHHhhcCcccccccccccccccccc
Confidence 222222 1110110 0000 0 00112221222211 00000
Q ss_pred ---cCCCCCccccccCcceecccCCCCCCCCCC----CC--CC----hhhHHHHHHHHhcCCCeeEEecCCcC-------
Q 014892 281 ---QGKPPGVMGWWPSRAVTFLDNHDTGSTQAH----WP--FP----SNHIMEGYAYILMHPGIPSVFYDHFY------- 340 (416)
Q Consensus 281 ---~~~~~~~~~~~p~~~~~fl~nHD~~R~~~~----~~--~~----~~~~~~a~a~llt~pGiP~Iy~G~E~------- 340 (416)
+...+.-+...|.+.+||++.||+..+-.. .. .. .++.++|++++++.+|||+|..|+||
T Consensus 634 ~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~~~~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~ 713 (898)
T TIGR02103 634 ELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAETPSAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFD 713 (898)
T ss_pred ccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCC
Confidence 000011123467789999999999764221 11 11 13457899999999999999999996
Q ss_pred -------------CCc---------------------------------------hhHHHHHHHHHHHHHhCcccCCCC-
Q 014892 341 -------------DWG---------------------------------------DSIHNQIVKLMDVRRQQDIHSRSS- 367 (416)
Q Consensus 341 -------------gw~---------------------------------------~~l~~~~~~Li~lR~~~~~l~~G~- 367 (416)
+|+ ..+.++++.||+||+++|+++-++
T Consensus 714 ~nSY~sgD~~N~vdw~~~~~~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~ 793 (898)
T TIGR02103 714 RDSYDSGDWFNRVDFSGQDNNWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTA 793 (898)
T ss_pred CCCCcCchhhheecccccccccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCH
Confidence 121 147899999999999999998763
Q ss_pred ------eEEEEec----CCEEEEEE-C-------------CEEEEEEcCCC
Q 014892 368 ------IKILEAQ----SNLYSAII-G-------------DKVCMKIGDGS 394 (416)
Q Consensus 368 ------~~~~~~~----~~~~~~~R-~-------------~~~lvvinn~~ 394 (416)
..++... +++++++. + +.++||+|.+.
T Consensus 794 ~~I~~~v~F~~~g~~~~~g~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~ 844 (898)
T TIGR02103 794 AEVMKRVDFRNTGPDQIPGLIVMSIDDGGIQAGASLDPRYDGIVVIFNARP 844 (898)
T ss_pred HHHHhheEEeccCCcCCCCEEEEEEcCCccccccccccccCeEEEEEcCCC
Confidence 3444433 57999976 2 13677777653
No 29
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=3.4e-41 Score=337.27 Aligned_cols=346 Identities=18% Similarity=0.164 Sum_probs=249.5
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCC---------CC-CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHS---------FA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~---------~~-~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
....+||++|||++|||+|++++ +. +.||++.| |.|||.|||++||++|+++||++||+||+|+|+|||
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHT 155 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHT 155 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 45589999999999999999999 65 68999999 699999999999999999999999999999999999
Q ss_pred cCCCCCCCC---cccccCC-----------------CCCCCCC----------------------CceecCCC----CCC
Q 014892 119 VGTTQGHGG---KYNRYDG-----------------IPLSWDE----------------------HAVTSCTG----GLG 152 (416)
Q Consensus 119 ~~~~~~~~~---~~~~f~~-----------------~~~~~~~----------------------~~~~~~~~----~~~ 152 (416)
|..|+ |.. .+.+|.+ .+..|+. ..++.-++ .|.
T Consensus 156 s~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 156 GKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred CCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 99998 430 0111111 1111110 00110000 111
Q ss_pred --------------CCCCCCCCCCCCcCCCCCHH--HHHHHH-HHHHHHHHhcCCCeEEecccCCCc-------------
Q 014892 153 --------------NGSTGDNFHGVPNIDHTQHF--VRKDII-AWLRWLRNTVGFQDFRFDFARGYS------------- 202 (416)
Q Consensus 153 --------------~~~~~~~~~~~~dln~~~~~--v~~~l~-~~~~~w~~~~gvDGfRlD~a~~~~------------- 202 (416)
+.+...++..+||||+.||. ||+.|+ +++++|. +.|++|||+||+..+.
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 11223346899999999999 999999 8999998 9999999999976543
Q ss_pred HHHHHHHHHhc-----CC-ceEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHh-cCchh
Q 014892 203 AKYVKEYIEGA-----RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV-KGQFW 275 (416)
Q Consensus 203 ~~~~~~~~~~~-----~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~-~~~~~ 275 (416)
..+.+..++.+ ++ .++++|.... .+.+..|+.. +.+..|||.....+..++ .|+..
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~---------------~~d~~~~~g~--~~dl~~dF~t~p~~~~AL~tgda~ 376 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLT---------------IDDIAAMSHG--GADLSYDFITRPAYHHALLTGDTE 376 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCC---------------HHHHHHHhCC--CcceeecccccHHHHHHHHcCCHH
Confidence 34544444332 23 6889996543 4677777763 789999999888777776 67765
Q ss_pred hhhhhcCCCCCccccccCcceecccCCCCCCCC-------------------------C---------------------
Q 014892 276 RLRDAQGKPPGVMGWWPSRAVTFLDNHDTGSTQ-------------------------A--------------------- 309 (416)
Q Consensus 276 ~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~R~~-------------------------~--------------------- 309 (416)
.+...+..... .+..+.+.++|+.|||+-... +
T Consensus 377 pLr~~L~~~~~-~gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~a~d~~p~~m~ 455 (688)
T TIGR02455 377 FLRLMLKEMHA-FGIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERLSGEHAPYNLK 455 (688)
T ss_pred HHHHHHHhhhc-CCCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHhcCCCccccce
Confidence 55555443211 122234678999999981100 0
Q ss_pred -------------------------CCCCChhhHHHHHHHHhc----CCCeeEEecC--------------CcCCCc---
Q 014892 310 -------------------------HWPFPSNHIMEGYAYILM----HPGIPSVFYD--------------HFYDWG--- 343 (416)
Q Consensus 310 -------------------------~~~~~~~~~~~a~a~llt----~pGiP~Iy~G--------------~E~gw~--- 343 (416)
....+.+++++++++|++ +||+|+|||| +|+|-.
T Consensus 456 ~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~ 535 (688)
T TIGR02455 456 FVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTR 535 (688)
T ss_pred EEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCccc
Confidence 011234568999999999 9999999999 776411
Q ss_pred ----------------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecC-CEEEEEE
Q 014892 344 ----------------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQS-NLYSAII 382 (416)
Q Consensus 344 ----------------------------------------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~-~~~~~~R 382 (416)
.++.+.+++|+++||+++++..|.+..+..++ .++++.+
T Consensus 536 wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~~~~~~gvLa~v~ 615 (688)
T TIGR02455 536 WIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIPDVQAPGLLVMVH 615 (688)
T ss_pred cccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeecCCCCCcEEEEEE
Confidence 27999999999999999999999999887754 7888876
Q ss_pred ---C--CEEEEEEcCCCCC------------------------C---CCCCcEEeeeCCceEEee
Q 014892 383 ---G--DKVCMKIGDGSWC------------------------P---AGKEWTLATSGHKYAVWH 415 (416)
Q Consensus 383 ---~--~~~lvvinn~~~~------------------------~---~~~~~~~~ls~~~~~~~~ 415 (416)
+ +.+++|.|.+... + ..+.+++.|++++|++++
T Consensus 616 ~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~~~~~~~i~L~~y~~~wl~ 680 (688)
T TIGR02455 616 ELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLTDDCELMINLDPYEALALR 680 (688)
T ss_pred EcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcCCCceeEEEecCcceEEEE
Confidence 3 4566666664311 0 225689999999999875
No 30
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.5e-41 Score=357.82 Aligned_cols=345 Identities=15% Similarity=0.188 Sum_probs=223.2
Q ss_pred cCceeEEEeeecCCCC---------CCcHHHHHhh-------hhhHHHcCCCEEEeCCCCCCC-----------------
Q 014892 26 NGREILFQGFNWESCK---------HDWWRNLERK-------VPDISKSGFTSVWLPPATHSF----------------- 72 (416)
Q Consensus 26 ~~~~~~~q~f~~~~~~---------~G~~~gi~~~-------LdyLk~LGv~~I~L~Pi~~~~----------------- 72 (416)
..+.+||.+=.++++. .|+|.|++++ |+|||+||||+|+|||+|+..
T Consensus 337 ~~D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l 416 (970)
T PLN02877 337 FSDISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKEL 416 (970)
T ss_pred CcccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchh
Confidence 3578999999998864 2899998887 667777799999999999742
Q ss_pred ----------------------CCCCcccccCCCCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEEccccCcCCCC
Q 014892 73 ----------------------APEGYLPQNLYSLNSSYGS-------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 123 (416)
Q Consensus 73 ----------------------~~~GY~~~d~~~id~~~Gt-------~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~ 123 (416)
.+|||+|..|++++..|++ ..|||+||++||++||+||||+|+||++..++
T Consensus 417 ~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 417 EKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCC
Confidence 3589999999999999998 25899999999999999999999999998776
Q ss_pred CCC-CcccccCCCCCCCCCCceecC-CCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 124 GHG-GKYNRYDGIPLSWDEHAVTSC-TGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 124 ~~~-~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
+.. +.+.... +...... .++.... .....+.+.++++||++|++++++|+++|||||||||++.++
T Consensus 497 ~~~~s~ld~~v-------P~YY~r~~~~G~~~n-----s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 497 FDENSVLDKIV-------PGYYLRRNSDGFIEN-----STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred cchhhcccCCC-------CCceEEECCCCCccc-----CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 432 2111111 1000111 1111111 122356688999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcC-----------C-ceEEEcccCCCCCC-------CC-------CCCCccchhhHhHhh---hhcc-C
Q 014892 202 SAKYVKEYIEGAR-----------P-IFSVGEYWDSCNYN-------SH-------GLDYNQDSHRQRIIN---WIDG-T 251 (416)
Q Consensus 202 ~~~~~~~~~~~~~-----------~-~~~vgE~~~~~~~~-------~~-------~~~~~~~~~~~~l~~---~~~~-~ 251 (416)
+.+.|.++.+.++ + .+++||.|+..+.. .. ...++++..++.|+. |-+. .
T Consensus 565 ~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~ 644 (970)
T PLN02877 565 MKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQ 644 (970)
T ss_pred cHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCC
Confidence 9998776654322 2 68999999743210 00 111222222333321 1000 0
Q ss_pred CCcccc-cC------c----h-------hhHHHHHHhcCchhhh--hhh------------cCCCCCccccccCcceecc
Q 014892 252 GQLSAA-FD------F----T-------TKGILQEAVKGQFWRL--RDA------------QGKPPGVMGWWPSRAVTFL 299 (416)
Q Consensus 252 ~~~~~~-fd------f----~-------~~~~l~~~~~~~~~~~--~~~------------~~~~~~~~~~~p~~~~~fl 299 (416)
.++.+. +. . . ....++..+.|+...+ .+. ....+.-+...|.+.|||+
T Consensus 645 qGf~~G~~~~pn~~~~~~~~~~~~~~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYv 724 (970)
T PLN02877 645 QGFVTGLFLQPNGHDQGGEDVQELMLATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYV 724 (970)
T ss_pred CceecccccCCcccccccchhhhhhhhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeee
Confidence 000000 00 0 0 0112222222322110 000 0000011234678999999
Q ss_pred cCCCCCCCCCC----CC--CC----hhhHHHHHHHHhcCCCeeEEecCCcC--------------------CCch-----
Q 014892 300 DNHDTGSTQAH----WP--FP----SNHIMEGYAYILMHPGIPSVFYDHFY--------------------DWGD----- 344 (416)
Q Consensus 300 ~nHD~~R~~~~----~~--~~----~~~~~~a~a~llt~pGiP~Iy~G~E~--------------------gw~~----- 344 (416)
+.||+..+-.. .. .. .++.++|++++++++|||+|..|+|| +|+.
T Consensus 725 s~HDN~TL~D~l~~~~~~~~s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~nn~ 804 (970)
T PLN02877 725 SAHDNETLFDIISLKTPMEISVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDSNNW 804 (970)
T ss_pred eccCCchHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheeccccccCcc
Confidence 99999764321 11 01 13467999999999999999999996 2321
Q ss_pred ----------------------------------hHHHHHHHHHHHHHhCcccCCCC-------eEEEEec----CCEEE
Q 014892 345 ----------------------------------SIHNQIVKLMDVRRQQDIHSRSS-------IKILEAQ----SNLYS 379 (416)
Q Consensus 345 ----------------------------------~l~~~~~~Li~lR~~~~~l~~G~-------~~~~~~~----~~~~~ 379 (416)
...+++|.||+||+++|+|+.++ ..++... +++++
T Consensus 805 ~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~~~~~gvi~ 884 (970)
T PLN02877 805 GVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGPSSIPGVIV 884 (970)
T ss_pred ccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCCCcCCCEEE
Confidence 34788999999999999998774 3444443 27999
Q ss_pred EEE
Q 014892 380 AII 382 (416)
Q Consensus 380 ~~R 382 (416)
|+.
T Consensus 885 ~~i 887 (970)
T PLN02877 885 MSI 887 (970)
T ss_pred EEE
Confidence 976
No 31
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-42 Score=350.95 Aligned_cols=363 Identities=25% Similarity=0.344 Sum_probs=243.3
Q ss_pred ceeEEEeeecCCCC-----CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCcccccCCCCCCCCCCHHHHHHHHHH
Q 014892 28 REILFQGFNWESCK-----HDWWRNLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHK 101 (416)
Q Consensus 28 ~~~~~q~f~~~~~~-----~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~-~~GY~~~d~~~id~~~Gt~~d~~~Lv~~ 101 (416)
.+.+||++-.++.- .||++||++||||||+|||++|||+||++++. ++||++.||+.|+|+|||+|||++||++
T Consensus 17 ~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~ 96 (545)
T KOG0471|consen 17 TESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILA 96 (545)
T ss_pred cCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHH
Confidence 48899999987643 38999999999999999999999999999985 6999999999999999999999999999
Q ss_pred HHHCCCEEEEEEccccCcCCCCCCCCc----------ccccCCC---------CCCCCCCcee---cCCCCCCCCCCCCC
Q 014892 102 MKQHKVRAMADIVINHRVGTTQGHGGK----------YNRYDGI---------PLSWDEHAVT---SCTGGLGNGSTGDN 159 (416)
Q Consensus 102 aH~~Gi~VilD~V~NH~~~~~~~~~~~----------~~~f~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~ 159 (416)
+|++||++|+|+|+||++..++|+... |.++.+. +..|.+.... .+..+.+..+.+..
T Consensus 97 ~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~ 176 (545)
T KOG0471|consen 97 MHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQF 176 (545)
T ss_pred HhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccch
Confidence 999999999999999999999876522 1122221 2233322111 11122233444555
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccCCCcHHHHHHHHHhcCCceEEEcccCCCCC-CCCCCCCcc
Q 014892 160 FHGVPNIDHTQHFVRKDIIAWLR-WLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYWDSCNY-NSHGLDYNQ 237 (416)
Q Consensus 160 ~~~~~dln~~~~~v~~~l~~~~~-~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~vgE~~~~~~~-~~~~~~~~~ 237 (416)
...+||+|++||+|++.+.++++ +|. ++||||||+|+++++..+++. ......|.+.+||.|.++++ ......|..
T Consensus 177 ~~~~pDln~~n~~V~~~~~~~l~~~~~-~~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~y~~ 254 (545)
T KOG0471|consen 177 AVLQPDLNYENPDVRKAIKEWLRDFWL-EKGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVAYQYNDYGE 254 (545)
T ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHh-hcCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhhcccccccc
Confidence 67899999999999999999999 676 999999999999999999888 33333357788998877543 112222222
Q ss_pred chhh--HhHhhhhccCCCcccccCchhhHHH-----------HHHh-cCchh---------hhhhhcCCC---------C
Q 014892 238 DSHR--QRIINWIDGTGQLSAAFDFTTKGIL-----------QEAV-KGQFW---------RLRDAQGKP---------P 285 (416)
Q Consensus 238 ~~~~--~~l~~~~~~~~~~~~~fdf~~~~~l-----------~~~~-~~~~~---------~~~~~~~~~---------~ 285 (416)
+... .-+..+-.........+.+.-...+ .... ++... ......... .
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 334 (545)
T KOG0471|consen 255 DQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEV 334 (545)
T ss_pred cchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHH
Confidence 1100 0011110111112223332211111 1110 00000 000000000 0
Q ss_pred Ccccccc--C-cceecccCCCCCCCCCCCCCChhhHHHHHHHHhcCCCeeEEecCCcCC---------------------
Q 014892 286 GVMGWWP--S-RAVTFLDNHDTGSTQAHWPFPSNHIMEGYAYILMHPGIPSVFYDHFYD--------------------- 341 (416)
Q Consensus 286 ~~~~~~p--~-~~~~fl~nHD~~R~~~~~~~~~~~~~~a~a~llt~pGiP~Iy~G~E~g--------------------- 341 (416)
..+...+ . .+...++|||..|..++++.+ ..++..++++|+||+|++|+|+|+|
T Consensus 335 ~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~~~--~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt 412 (545)
T KOG0471|consen 335 DWLSNHDTENRWAHWVLGNHDQARLASRFGSD--SVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRT 412 (545)
T ss_pred HHHhcCCccCCceeeeecCccchhhHHHhcch--hHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCC
Confidence 0000111 1 234556778888887776533 4677788999999999999999964
Q ss_pred ---Cc---------------------------------hhHHHHHHHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---
Q 014892 342 ---WG---------------------------------DSIHNQIVKLMDVRRQQDIHSRSSIKILEAQSNLYSAII--- 382 (416)
Q Consensus 342 ---w~---------------------------------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R--- 382 (416)
|+ ++++..++++..+|+....+..|.......++++++|.|
T Consensus 413 ~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~if~~~r~~~ 492 (545)
T KOG0471|consen 413 PMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGLFSFSRNWD 492 (545)
T ss_pred ccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCceEEEEeccC
Confidence 11 268899999999999998788888888888889999998
Q ss_pred -CCEEEEEEcCCC
Q 014892 383 -GDKVCMKIGDGS 394 (416)
Q Consensus 383 -~~~~lvvinn~~ 394 (416)
.+..++++|.+.
T Consensus 493 ~~~~~~~~~~~~~ 505 (545)
T KOG0471|consen 493 GNERFIAVLNFGD 505 (545)
T ss_pred CCceEEEEEecCC
Confidence 345555555543
No 32
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.6e-41 Score=339.72 Aligned_cols=348 Identities=16% Similarity=0.192 Sum_probs=221.6
Q ss_pred ceeEEEeeecCCCC---CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCcccccCCCCCCCCCCHHHHHHHHHHH
Q 014892 28 REILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKALLHKM 102 (416)
Q Consensus 28 ~~~~~q~f~~~~~~---~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~--~~GY~~~d~~~id~~~Gt~~d~~~Lv~~a 102 (416)
.-+||-+=.-..+. .|+++.++++|||||+||||+|+||||.+.+. +|||+++-||++.++|||++|||+||++|
T Consensus 144 ~~vIYElHvGs~~~~~~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~a 223 (628)
T COG0296 144 PIVIYELHVGSFTPDRFLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAA 223 (628)
T ss_pred CceEEEEEeeeccCCCCcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHH
Confidence 35677666655555 79999999999999999999999999999884 79999999999999999999999999999
Q ss_pred HHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHH
Q 014892 103 KQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 182 (416)
Q Consensus 103 H~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~ 182 (416)
|++||.||||+|+||.+.+...- ..|++....-+..........|+ ..-.|+..++||++|++++.
T Consensus 224 H~~GIgViLD~V~~HF~~d~~~L----~~fdg~~~~e~~~~~~~~~~~Wg----------~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 224 HQAGIGVILDWVPNHFPPDGNYL----ARFDGTFLYEHEDPRRGEHTDWG----------TAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred HHcCCEEEEEecCCcCCCCcchh----hhcCCccccccCCcccccCCCcc----------cchhccCcHHHHHHHHHHHH
Confidence 99999999999999999965421 12222111111000001111111 12245558999999999999
Q ss_pred HHHHhcCCCeEEecccCCCc------------------------HHHHHHHHHhcC---C-ceEEEcccCCCCCCCCCCC
Q 014892 183 WLRNTVGFQDFRFDFARGYS------------------------AKYVKEYIEGAR---P-IFSVGEYWDSCNYNSHGLD 234 (416)
Q Consensus 183 ~w~~~~gvDGfRlD~a~~~~------------------------~~~~~~~~~~~~---~-~~~vgE~~~~~~~~~~~~~ 234 (416)
+|+++|+|||+|+|||..|. .+|+++..+-++ | .+.|+|-|...+.
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~------ 363 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPH------ 363 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCC------
Confidence 99999999999999997663 234444444443 3 5778888876321
Q ss_pred CccchhhHhHhhhhccCCCcccccCchhhHHHHHHh--cCc--hhhhhhhcCCCCCccccccCcceecccCCCCC--CCC
Q 014892 235 YNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAV--KGQ--FWRLRDAQGKPPGVMGWWPSRAVTFLDNHDTG--STQ 308 (416)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~--~~~--~~~~~~~~~~~~~~~~~~p~~~~~fl~nHD~~--R~~ 308 (416)
-.+...+. +.++.-..|+. .|.+.+ .+. ..+....-....++ -+.+...+.+..|||+. -..
T Consensus 364 -------~t~~~~~g-G~gf~yk~nmg---~m~D~~~y~~~~~~~r~~~h~~~tf~~-~y~~se~~~l~~sHDevvhGk~ 431 (628)
T COG0296 364 -------VTLPVAIG-GLGFGYKWNMG---WMHDTLFYFGKDPVYRKYHHGELTFGL-LYAFSENVVLPLSHDEVVHGKR 431 (628)
T ss_pred -------ceeeeccc-ccchhhhhhhh---hHhhHHHhcccCccccccccCCCcccc-ccccceeEeccccccceeeccc
Confidence 00000111 11122222322 222222 121 11111111100111 13345778999999996 222
Q ss_pred C---CCCC----ChhhHHHHHHHHhcCCCeeEEecCCcCCCc-----------------------hhHHHHHHHHHHHHH
Q 014892 309 A---HWPF----PSNHIMEGYAYILMHPGIPSVFYDHFYDWG-----------------------DSIHNQIVKLMDVRR 358 (416)
Q Consensus 309 ~---~~~~----~~~~~~~a~a~llt~pGiP~Iy~G~E~gw~-----------------------~~l~~~~~~Li~lR~ 358 (416)
+ ++.. ....++.++++|++.||+|++|+|+|||-. +++..+.+.|.++-+
T Consensus 432 sl~~rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~ 511 (628)
T COG0296 432 SLGERMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYR 511 (628)
T ss_pred chhccCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHHhhc
Confidence 2 2211 234688999999999999999999998621 245555665665666
Q ss_pred hCcccCCC-----CeEEEEec---CCEEEEEE-----CCEEEEEEcCCCCC---------CCCCCcEEeee
Q 014892 359 QQDIHSRS-----SIKILEAQ---SNLYSAII-----GDKVCMKIGDGSWC---------PAGKEWTLATS 407 (416)
Q Consensus 359 ~~~~l~~G-----~~~~~~~~---~~~~~~~R-----~~~~lvvinn~~~~---------~~~~~~~~~ls 407 (416)
..+.+..- .+..+..+ +++++|.| +++.+|++||.... |.++.|+..+.
T Consensus 512 ~~~~l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~~~g~~~~~ln 582 (628)
T COG0296 512 IPDPLHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVPVAGRWREVLN 582 (628)
T ss_pred cCCccchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCcccccEEEecc
Confidence 66666543 33444432 35888877 45667777775432 23456777665
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=1.7e-39 Score=338.21 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=145.0
Q ss_pred CCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 39 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 39 ~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+.++++|++++++||||++||||+|||+||+++. ++|||+++||+.|+|+||++++|++||++||++||+||+|+|+|
T Consensus 9 ~~~~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpN 88 (825)
T TIGR02401 9 LRAGFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPN 88 (825)
T ss_pred eCCCCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4567899999999999999999999999999864 68999999999999999999999999999999999999999999
Q ss_pred cCcCC---CCCC--------CCcccccCCCCCCCCCCc----------------------------------------ee
Q 014892 117 HRVGT---TQGH--------GGKYNRYDGIPLSWDEHA----------------------------------------VT 145 (416)
Q Consensus 117 H~~~~---~~~~--------~~~~~~f~~~~~~~~~~~----------------------------------------~~ 145 (416)
|++.+ ++|+ .+.|..|.. .+|++.. .+
T Consensus 89 H~a~~~~~n~wf~dvl~~g~~S~y~~~Fd--idw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~ 166 (825)
T TIGR02401 89 HMAVHLEQNPWWWDVLKNGPSSAYAEYFD--IDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRL 166 (825)
T ss_pred ccccccccChHHHHHHHhCCCCCccCceE--EeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccC
Confidence 99987 4442 233432221 2222100 00
Q ss_pred cCCC-------------C------------------C------CCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhc
Q 014892 146 SCTG-------------G------------------L------GNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 188 (416)
Q Consensus 146 ~~~~-------------~------------------~------~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~ 188 (416)
+-.. + | .+.....+..+++.++.++|+|.+...+.+..|+++.
T Consensus 167 Pi~p~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g 246 (825)
T TIGR02401 167 PLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEG 246 (825)
T ss_pred CcCccchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcC
Confidence 0000 0 0 0011112346799999999999999999999999666
Q ss_pred CCCeEEecccCCC--cHHHHHHHHHhcCC-ceEEEc-ccCC
Q 014892 189 GFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGE-YWDS 225 (416)
Q Consensus 189 gvDGfRlD~a~~~--~~~~~~~~~~~~~~-~~~vgE-~~~~ 225 (416)
-|||+|+|+++++ |..+|+.+.+++.+ .+++.| ++..
T Consensus 247 ~vdGlRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 247 LVDGLRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred CCceEEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 6999999999999 88899999988886 778888 5544
No 34
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=340.37 Aligned_cols=318 Identities=17% Similarity=0.271 Sum_probs=212.3
Q ss_pred eeeccCceeEEEeeecCCCC---------CCcHHHHHhh--hhhHHHcCCCEEEeCCCCCCC-----------CCCCccc
Q 014892 22 AVIRNGREILFQGFNWESCK---------HDWWRNLERK--VPDISKSGFTSVWLPPATHSF-----------APEGYLP 79 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~~~~~---------~G~~~gi~~~--LdyLk~LGv~~I~L~Pi~~~~-----------~~~GY~~ 79 (416)
|+++-.+.|||-.=.+++++ .|+|.|++++ |+|||+||||+|+||||+... .+|||+|
T Consensus 165 ~~~p~~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP 244 (697)
T COG1523 165 PRIPWEDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDP 244 (697)
T ss_pred CCCCccceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCc
Confidence 44556778999999998872 2999999999 999999999999999999643 4899999
Q ss_pred ccCCCCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEEccccCcCCCC-CCCCcccccCC---CCCCCCCCceecCC
Q 014892 80 QNLYSLNSSYGS-------EHLLKALLHKMKQHKVRAMADIVINHRVGTTQ-GHGGKYNRYDG---IPLSWDEHAVTSCT 148 (416)
Q Consensus 80 ~d~~~id~~~Gt-------~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~-~~~~~~~~f~~---~~~~~~~~~~~~~~ 148 (416)
..||+++++|-+ ..|||.||+++|++||+||||||+|||+.... +.. ..|++ ..+.+.. .
T Consensus 245 ~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t---~~f~~id~~~Yyr~~------~ 315 (697)
T COG1523 245 LNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPT---LSFRGIDPNYYYRLD------P 315 (697)
T ss_pred ccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcc---cccccCCcCceEEEC------C
Confidence 999999999965 34999999999999999999999999986321 111 11221 0011111 1
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHH-----HHHHHhcC--C----ce
Q 014892 149 GGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYV-----KEYIEGAR--P----IF 217 (416)
Q Consensus 149 ~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~-----~~~~~~~~--~----~~ 217 (416)
++.....++| ...+|.++|.||++|+|+++||+++++|||||||.+..+..+.. ..+...+. | .-
T Consensus 316 dg~~~N~TGc----GNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~~~~~~~l~~~~~~~p~l~~~k 391 (697)
T COG1523 316 DGYYSNGTGC----GNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETMLFDINANLFLAGEGDPVLSGVK 391 (697)
T ss_pred CCCeecCCcc----CcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccccccCcchhhhccCCccccCce
Confidence 1111112333 56799999999999999999999999999999999987765544 12222221 1 34
Q ss_pred EEEcccCCCC--CCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcCch---hhhhhhcCCCCCcc---c
Q 014892 218 SVGEYWDSCN--YNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQF---WRLRDAQGKPPGVM---G 289 (416)
Q Consensus 218 ~vgE~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~~---~~~~~~~~~~~~~~---~ 289 (416)
++||.|+-.+ ++-|... .... .+..+-.++..++.+..|+. ..+...+..+...+ +
T Consensus 392 liAepwD~g~~gyqvG~Fp--------d~~~--------~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~ 455 (697)
T COG1523 392 LIAEPWDIGPGGYQVGNFP--------DSPR--------WAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNG 455 (697)
T ss_pred eeecchhhcCCCcccccCC--------Cccc--------hhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccC
Confidence 7888886431 2211110 0001 11122223344444443332 22222222211112 2
Q ss_pred cccCcceecccCCCCCCCCC-----------------------------CC---------CCChhhHHHHHHHHhcCCCe
Q 014892 290 WWPSRAVTFLDNHDTGSTQA-----------------------------HW---------PFPSNHIMEGYAYILMHPGI 331 (416)
Q Consensus 290 ~~p~~~~~fl~nHD~~R~~~-----------------------------~~---------~~~~~~~~~a~a~llt~pGi 331 (416)
..|..++||+..||.-.+.. .. ...+...+...+.+|.+.|+
T Consensus 456 ~~p~~sINyv~aHDgfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~ 535 (697)
T COG1523 456 RRPSQSINYVTAHDGFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGT 535 (697)
T ss_pred CCccceeeEEeecCCCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 45778999999999953211 00 00112345666777788999
Q ss_pred eEEecCCcCC--------------------Cc-h---hHHHHHHHHHHHHHhCcccCCCCe
Q 014892 332 PSVFYDHFYD--------------------WG-D---SIHNQIVKLMDVRRQQDIHSRSSI 368 (416)
Q Consensus 332 P~Iy~G~E~g--------------------w~-~---~l~~~~~~Li~lR~~~~~l~~G~~ 368 (416)
||+-.|||++ |+ . .++++.+.||+|||++|+|+...+
T Consensus 536 pml~~gDe~~rtq~gnnNsYcqdn~inwlDW~~~~~~~l~~f~~~lIaLRk~~~af~~~~f 596 (697)
T COG1523 536 PMLLAGDEFGRTQYGNNNAYCQDNEINWLDWSTEANNDLVEFTKGLIALRKAHPAFRRRSF 596 (697)
T ss_pred cccccccccccccccccccccCCcccceeccCccccHHHHHHHHHHHHHhhhcchhcccch
Confidence 9999999963 66 2 799999999999999999988433
No 35
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=279.67 Aligned_cols=358 Identities=20% Similarity=0.329 Sum_probs=262.2
Q ss_pred eeeccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC--------CCCcccccCCCCCCCCCCHH
Q 014892 22 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA--------PEGYLPQNLYSLNSSYGSEH 93 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~--------~~GY~~~d~~~id~~~Gt~~ 93 (416)
+.+++++.+|+|.|+|. +-+-..|.-..|.--|+-+|+++|+.|+.. ...|+|+. |+++.+-|.++
T Consensus 22 t~~~~~R~tmVHLFEWK-----W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~tRSGNE~ 95 (504)
T KOG2212|consen 22 TNTQQGRTTIVHLFEWK-----WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLCTRSGNED 95 (504)
T ss_pred chhhcCcceEEEEEEee-----hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEeeccCCCHH
Confidence 56889999999999999 444445556689999999999999998752 13799997 89999999999
Q ss_pred HHHHHHHHHHHCCCEEEEEEccccCcCCC-C----CCCCccc-----ccCC---CCCCCCCCc-------eecCCCCCCC
Q 014892 94 LLKALLHKMKQHKVRAMADIVINHRVGTT-Q----GHGGKYN-----RYDG---IPLSWDEHA-------VTSCTGGLGN 153 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~-~----~~~~~~~-----~f~~---~~~~~~~~~-------~~~~~~~~~~ 153 (416)
||+.||+.|.+-|+|+++|+|+|||+... . +..+.+. -|-+ ...+|++.. +.++.+. .
T Consensus 96 eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPYs~~DFn~~kc~~~~~~i~~~Nda--~ 173 (504)
T KOG2212|consen 96 EFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPYSGWDFNDGKCKTGSGDIENYNDA--T 173 (504)
T ss_pred HHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCcccccCCCcccCCCccccccccch--h
Confidence 99999999999999999999999999622 1 1111111 1111 113455421 1122222 2
Q ss_pred CCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcCC-----------ceEEEcc
Q 014892 154 GSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARP-----------IFSVGEY 222 (416)
Q Consensus 154 ~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~-----------~~~vgE~ 222 (416)
.+..|..-++.|||..+..||..+++.+.+++ +.||.|||+||+|||++.-+..+...++. .|++-|+
T Consensus 174 ~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srpfi~qEV 252 (504)
T KOG2212|consen 174 QVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKPFIYQEV 252 (504)
T ss_pred hhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHHHHHHHHHHhhcccccccCCCCceehhhh
Confidence 35678889999999999999999999999999 99999999999999999999999888762 3555565
Q ss_pred cCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcCc-hhhhhhhcCCCCCccccccC-cceeccc
Q 014892 223 WDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ-FWRLRDAQGKPPGVMGWWPS-RAVTFLD 300 (416)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~p~-~~~~fl~ 300 (416)
.+.. +++-. -.+|. +...+.+|.+...+..++++. ....+..|+.. +++.|. ++++|++
T Consensus 253 ID~G----gE~v~--------~~dY~----g~G~~TeF~f~~~ig~~~r~~~~~kyL~nwG~~---wGf~~s~~~L~FvD 313 (504)
T KOG2212|consen 253 IDLG----GEPIK--------SSDYF----GNGRVTEFKFGAKLGTVIRKWNKMKYLKNWGEG---WGFMPSDRALVFVD 313 (504)
T ss_pred hhcC----Cceee--------ccccc----CCceeeeeechHHHHHHHhcchhHHHHHhcCCc---cCcCCCcceEEEec
Confidence 5431 11100 00111 244566777777888888554 56677778754 455565 8899999
Q ss_pred CCCCCCCCCC-----C-CCChhhHHHHHHHHhcCC-CeeEEecCCcC----------------------------CCchh
Q 014892 301 NHDTGSTQAH-----W-PFPSNHIMEGYAYILMHP-GIPSVFYDHFY----------------------------DWGDS 345 (416)
Q Consensus 301 nHD~~R~~~~-----~-~~~~~~~~~a~a~llt~p-GiP~Iy~G~E~----------------------------gw~~~ 345 (416)
|||++|-... + -...+++++|.+|||+.| |+|-+...--| ||-++
T Consensus 314 NHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~~GWvCE 393 (504)
T KOG2212|consen 314 NHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCGNGWVCE 393 (504)
T ss_pred cCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCcccCceeee
Confidence 9999996543 1 124568999999999999 99998775433 34334
Q ss_pred -HHHHHHHHHHHHHhCcccCCCCeEEEEec-CCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeCCc
Q 014892 346 -IHNQIVKLMDVRRQQDIHSRSSIKILEAQ-SNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSGHK 410 (416)
Q Consensus 346 -l~~~~~~Li~lR~~~~~l~~G~~~~~~~~-~~~~~~~R~~~~lvvinn~~~~--------~~~~~~~~~ls~~~ 410 (416)
--..|++|.++|..- +.-.++-+..+ .+.++|.|+++..+++||.+.. .+.|.+.++.||..
T Consensus 394 HRWrqI~~Mv~FrnAV---~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~ 465 (504)
T KOG2212|consen 394 HRWRQIRNMVNFRNAV---DGTPFTNWYDNGSNQIAFGRGNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDK 465 (504)
T ss_pred chHHHHHHHHhhhhhc---CCccccceeeCCCcEEEEecCCccEEEEeCcchhHHHHHhcCCCCCceeeeecccc
Confidence 458899999999875 33344545544 6799999999999999996532 23478888888753
No 36
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=100.00 E-value=2.1e-33 Score=293.74 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=80.2
Q ss_pred CCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 39 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 39 ~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+.++++|++++++|+||++||||+|||+||+++. ++|||++.||+.|||+||+.++|++||++||++||+||+|+|+|
T Consensus 13 ~~~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 13 FHAGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred eCCCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4567899999999999999999999999999875 68999999999999999999999999999999999999999999
Q ss_pred cCcCCCC
Q 014892 117 HRVGTTQ 123 (416)
Q Consensus 117 H~~~~~~ 123 (416)
|++.+++
T Consensus 93 H~~~~~~ 99 (879)
T PRK14511 93 HMAVGGP 99 (879)
T ss_pred cccCcCc
Confidence 9999763
No 37
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=4.8e-32 Score=276.26 Aligned_cols=296 Identities=15% Similarity=0.182 Sum_probs=184.7
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCC-CCCCCCceecCCCCCCCCCCC
Q 014892 79 PQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP-LSWDEHAVTSCTGGLGNGSTG 157 (416)
Q Consensus 79 ~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (416)
+++||+++++|||++|||+||++||++||+||||+|+||++.+.... ...|++.+ ..++.. ..+. .
T Consensus 427 vt~fFApssRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~G---L~~fDGt~~~Yf~~~-----~~g~-----~ 493 (872)
T PLN03244 427 VTNFFAASSRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVG---LSLFDGSNDCYFHTG-----KRGH-----H 493 (872)
T ss_pred cCcccccCcccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccc---hhhcCCCccceeccC-----CCCc-----c
Confidence 78999999999999999999999999999999999999999865311 01122211 011110 0000 0
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc-------------------------HHHHHHHHHh
Q 014892 158 DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------------------------AKYVKEYIEG 212 (416)
Q Consensus 158 ~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~-------------------------~~~~~~~~~~ 212 (416)
..| +...+|+.+|+||++|++++++|+++|||||||+|++..|- ..|++.+.+.
T Consensus 494 ~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ 572 (872)
T PLN03244 494 KHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEI 572 (872)
T ss_pred CCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHH
Confidence 111 23568999999999999999999999999999999983221 2355555444
Q ss_pred c---CC-ceEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchh----hHHHHHHhcC---chhhhhhhc
Q 014892 213 A---RP-IFSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTT----KGILQEAVKG---QFWRLRDAQ 281 (416)
Q Consensus 213 ~---~~-~~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~----~~~l~~~~~~---~~~~~~~~~ 281 (416)
+ .| .++|||-..+-+ .|..-... | ...||+.. .....+.+.. ..+.+-...
T Consensus 573 ih~~~P~~itIAEDsS~~P---------------~vt~Pv~~-G--GLGFDYKWnMgwmdd~lkylk~~pderw~~~~It 634 (872)
T PLN03244 573 LHALHPKIITIAEDATYYP---------------GLCEPTSQ-G--GLGFDYYVNLSAPDMWLDFLDNIPDHEWSMSKIV 634 (872)
T ss_pred HHHhCCCeEEEEEcCCCCc---------------CccccCCC-C--CCCccceecCcchHHHHHHHHhCCCcccCHHHHh
Confidence 3 45 678999654311 11111111 1 12344432 2223333311 112111111
Q ss_pred CCCCCccccccCcceecccCCCCC----CCCC-CC-------CCC--------hhhHHHHHHHHhcCCCee-EEecCCcC
Q 014892 282 GKPPGVMGWWPSRAVTFLDNHDTG----STQA-HW-------PFP--------SNHIMEGYAYILMHPGIP-SVFYDHFY 340 (416)
Q Consensus 282 ~~~~~~~~~~p~~~~~fl~nHD~~----R~~~-~~-------~~~--------~~~~~~a~a~llt~pGiP-~Iy~G~E~ 340 (416)
.. ...-.......+.|.||||+. +... .+ ... ....|++.++++++||.| ++|+|.||
T Consensus 635 fs-L~~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~kkLnFMGNEF 713 (872)
T PLN03244 635 ST-LIANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHAYLNFMGNEF 713 (872)
T ss_pred hh-hhcccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCccceeeccccc
Confidence 00 000011223678999999993 2111 00 000 012355666788899988 79999998
Q ss_pred C------C----------------c-------hhHHHHHHHHHHHHHhCcccCCCCeEEEEe--cCCEEEEEECCEEEEE
Q 014892 341 D------W----------------G-------DSIHNQIVKLMDVRRQQDIHSRSSIKILEA--QSNLYSAIIGDKVCMK 389 (416)
Q Consensus 341 g------w----------------~-------~~l~~~~~~Li~lR~~~~~l~~G~~~~~~~--~~~~~~~~R~~~~lvv 389 (416)
| | + +.|.+++|.|++|++++++|..|...+... ++.|+||.|+ .+|+|
T Consensus 714 Ghpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF~R~-~LLfV 792 (872)
T PLN03244 714 GHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISFMRG-PFLFI 792 (872)
T ss_pred CCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEEEec-CEEEE
Confidence 5 2 1 247789999999999999998776544433 3569999997 58888
Q ss_pred EcCCCC---------CCCCCCcEEeeeC
Q 014892 390 IGDGSW---------CPAGKEWTLATSG 408 (416)
Q Consensus 390 inn~~~---------~~~~~~~~~~ls~ 408 (416)
+|.+.. .|..|.|+.+|+.
T Consensus 793 fNF~P~~sy~dYrIGVp~~G~Y~eILNS 820 (872)
T PLN03244 793 FNFHPSNSYEGYDVGVEEAGEYQIILNS 820 (872)
T ss_pred EeCCCCCCccCCEECCCCCCeEEEEEeC
Confidence 888642 1456789988864
No 38
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-32 Score=273.76 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=126.8
Q ss_pred eccCceeEEEeeecCCCCC----Cc---HHHHHhh-hhhHHHcCCCEEEeCCCCCCC---CCCCcccccCCCCCCCCCCH
Q 014892 24 IRNGREILFQGFNWESCKH----DW---WRNLERK-VPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYGSE 92 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~----G~---~~gi~~~-LdyLk~LGv~~I~L~Pi~~~~---~~~GY~~~d~~~id~~~Gt~ 92 (416)
....+=.||..=++.++.+ -+ ++|.++| |++||+||+|+|+||||+++. ..+||.|++||++..+|||.
T Consensus 225 ~P~~sL~IYE~HVrgfS~~E~~v~~~~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~ 304 (757)
T KOG0470|consen 225 IPESSLRIYELHVRGFSSHESKVNTRGGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTP 304 (757)
T ss_pred CChhheEEEEEeeccccCCCCccccccchhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCC
Confidence 3444556777777655432 13 9999999 999999999999999999994 36899999999999999999
Q ss_pred H------HHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCC--CCCCCCceecCCCCCCCCCCCCCCCCCC
Q 014892 93 H------LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP--LSWDEHAVTSCTGGLGNGSTGDNFHGVP 164 (416)
Q Consensus 93 ~------d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
+ |||+||++||..||.|+||||.||++.+.. ..+..|++.. .+++. +..+. .+.....
T Consensus 305 ~s~~ri~efK~lVd~aHs~GI~VlLDVV~sHaa~n~~---d~l~~fdGid~~~Yf~~-------~~r~~----h~~~~~r 370 (757)
T KOG0470|consen 305 ESPCRINEFKELVDKAHSLGIEVLLDVVHSHAAKNSK---DGLNMFDGIDNSVYFHS-------GPRGY----HNSWCSR 370 (757)
T ss_pred CcccchHHHHHHHHHHhhCCcEEehhhhhhhcccCcC---CcchhccCcCCceEEEe-------CCccc----ccccccc
Confidence 9 999999999999999999999999999332 2223344311 01111 11110 1112344
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc
Q 014892 165 NIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS 202 (416)
Q Consensus 165 dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~ 202 (416)
-+|+.+|+|+++|++.++||+.||+|||||+|.+..|-
T Consensus 371 ~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~ 408 (757)
T KOG0470|consen 371 LFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSML 408 (757)
T ss_pred cccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhh
Confidence 58999999999999999999999999999999886553
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.95 E-value=7.6e-28 Score=210.25 Aligned_cols=92 Identities=21% Similarity=0.350 Sum_probs=87.3
Q ss_pred eeEEEeeecCCCC-CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC----CCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 014892 29 EILFQGFNWESCK-HDWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKALLHKMK 103 (416)
Q Consensus 29 ~~~~q~f~~~~~~-~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~----~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH 103 (416)
+++.|.|.|..+. .|||+||+++|+||++||||+|||+||++++ ++|||++.||++++|+|||++||++||++||
T Consensus 1 qi~~~~F~~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h 80 (166)
T smart00642 1 QIYPDRFADGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAH 80 (166)
T ss_pred CeeeccccCCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHH
Confidence 4789999997665 4899999999999999999999999999998 6899999999999999999999999999999
Q ss_pred HCCCEEEEEEccccCcC
Q 014892 104 QHKVRAMADIVINHRVG 120 (416)
Q Consensus 104 ~~Gi~VilD~V~NH~~~ 120 (416)
++||+||+|+|+||++.
T Consensus 81 ~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 81 ARGIKVILDVVINHTSD 97 (166)
T ss_pred HCCCEEEEEECCCCCCC
Confidence 99999999999999987
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.88 E-value=3.1e-22 Score=221.83 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=78.5
Q ss_pred CCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 38 ESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 38 ~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
++..+++|++++++||||++||||+|||+||+++. ++|||++.||+.|+|.||+.++|++||++||++||+||||+|+
T Consensus 750 q~~~~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 750 QFHKDFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred EeCCCCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44567899999999999999999999999999963 6899999999999999999999999999999999999999999
Q ss_pred ccCcC
Q 014892 116 NHRVG 120 (416)
Q Consensus 116 NH~~~ 120 (416)
||++.
T Consensus 830 NH~~~ 834 (1693)
T PRK14507 830 NHMGV 834 (1693)
T ss_pred cccCC
Confidence 99995
No 41
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.5e-19 Score=182.05 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=75.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
+|....+.||||++|||+++|++|||... |.|||||+|+..|+|.+|+.+.|.+||.++|++||.+|+|+|+|||+..
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 79999999999999999999999999875 6899999999999999999999999999999999999999999999987
No 42
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.77 E-value=6.1e-17 Score=175.13 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=76.5
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCC-CCCCCCcccccCCCCCCCCC----CHHHHHHHHHHHHHC-CCEEEEEEccc
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYG----SEHLLKALLHKMKQH-KVRAMADIVIN 116 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~-~~~~~GY~~~d~~~id~~~G----t~~d~~~Lv~~aH~~-Gi~VilD~V~N 116 (416)
|.|....++|+|||+||+|+|||+||++ +.+.|.|++.||+.|||.|| +.+||++||+++|++ ||+||+|+|+|
T Consensus 129 G~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV~N 208 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDIVFN 208 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEeeec
Confidence 7899999999999999999999999995 45789999999999999994 899999999999997 99999999999
Q ss_pred cCcCCCC
Q 014892 117 HRVGTTQ 123 (416)
Q Consensus 117 H~~~~~~ 123 (416)
||+.+++
T Consensus 209 HTa~ds~ 215 (1464)
T TIGR01531 209 HTANNSP 215 (1464)
T ss_pred ccccCCH
Confidence 9999995
No 43
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.33 E-value=6.2e-11 Score=118.53 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=111.6
Q ss_pred eeeccCceeEEEeeecCCCCCCcHHHHHhhhhhHHH---------------cCCCEEEeCCCCCCC--------------
Q 014892 22 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISK---------------SGFTSVWLPPATHSF-------------- 72 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~---------------LGv~~I~L~Pi~~~~-------------- 72 (416)
+++.+. .-|+|+=..+.+.+|+|.|+++.-..|.+ .|+++|+|+||=+..
T Consensus 173 ~rv~~P-~nILQiHv~TAsp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~ 251 (811)
T PF14872_consen 173 PRVPAP-RNILQIHVGTASPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFS 251 (811)
T ss_pred cccCCC-ceeEEEecCCCCCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceee
Confidence 334443 56999999999999999999999888865 799999999995432
Q ss_pred -------------------------------CCCCccccc--CCCCCCCC---CCHHHHHHHHHHHHH---CCCEEEEEE
Q 014892 73 -------------------------------APEGYLPQN--LYSLNSSY---GSEHLLKALLHKMKQ---HKVRAMADI 113 (416)
Q Consensus 73 -------------------------------~~~GY~~~d--~~~id~~~---Gt~~d~~~Lv~~aH~---~Gi~VilD~ 113 (416)
..|||++.= .-+++|.. +.++|+-.||..+|. ..|+||+|+
T Consensus 252 ~~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDl 331 (811)
T PF14872_consen 252 IRPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDL 331 (811)
T ss_pred ecccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEee
Confidence 247777632 23444433 347999999999997 579999999
Q ss_pred ccccCcCCCCC-CCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014892 114 VINHRVGTTQG-HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQD 192 (416)
Q Consensus 114 V~NH~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDG 192 (416)
|+.|.-..+.. -++.| ...++= -.-|+|+.+|.||.-+.+.=+.=+ ++|+||
T Consensus 332 VyGHADNQ~~~LLn~~f---------------lkGPnM-----------YGQdlnhq~P~VRAILLEmQRRK~-n~GaDG 384 (811)
T PF14872_consen 332 VYGHADNQALDLLNRRF---------------LKGPNM-----------YGQDLNHQNPVVRAILLEMQRRKI-NTGADG 384 (811)
T ss_pred ecccccchhhHhhhhhh---------------ccCCcc-----------ccccccccChHHHHHHHHHHHhhc-ccCCce
Confidence 99998774421 11111 000000 024799999999999999887776 999999
Q ss_pred EEecccCCC
Q 014892 193 FRFDFARGY 201 (416)
Q Consensus 193 fRlD~a~~~ 201 (416)
+|+|.+...
T Consensus 385 IRVDGgQDF 393 (811)
T PF14872_consen 385 IRVDGGQDF 393 (811)
T ss_pred eEecccccc
Confidence 999998543
No 44
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=99.00 E-value=8e-10 Score=108.48 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=75.2
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCcccccCCCCCCCCCC------HHHHHHHHHHHH-HCCCEEEEEEc
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGS------EHLLKALLHKMK-QHKVRAMADIV 114 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~Gt------~~d~~~Lv~~aH-~~Gi~VilD~V 114 (416)
|.+..=.++|..++++|+|.|+++|+.+-+ |...|.+.|...++|.+.. .++++++|++++ +.||.+|.|+|
T Consensus 19 G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 19 GPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred CCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 568888899999999999999999999986 4679999999999998755 379999999995 79999999999
Q ss_pred cccCcCCCCCCC
Q 014892 115 INHRVGTTQGHG 126 (416)
Q Consensus 115 ~NH~~~~~~~~~ 126 (416)
+|||+.+++|-.
T Consensus 99 ~NHtA~nS~Wl~ 110 (423)
T PF14701_consen 99 LNHTANNSPWLR 110 (423)
T ss_pred eccCcCCChHHH
Confidence 999999998743
No 45
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.95 E-value=2.3e-08 Score=101.30 Aligned_cols=204 Identities=18% Similarity=0.275 Sum_probs=123.8
Q ss_pred CCCCCCcCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCcHHHHHHHHHhcC-------------Cc
Q 014892 159 NFHGVPNIDHTQHFVRKDIIAWLRWLRN---------TVGFQDFRFDFARGYSAKYVKEYIEGAR-------------PI 216 (416)
Q Consensus 159 ~~~~~~dln~~~~~v~~~l~~~~~~w~~---------~~gvDGfRlD~a~~~~~~~~~~~~~~~~-------------~~ 216 (416)
.|.-..|++-+||.|+.+...|+.|++. +..+||+|+|||.+++.+++.-..+-.+ ..
T Consensus 139 EfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An~H 218 (809)
T PF02324_consen 139 EFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANANKH 218 (809)
T ss_dssp S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHCTC
T ss_pred eeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHhhh
Confidence 3455568999999999999999999995 6679999999999999988764433211 24
Q ss_pred eEEEcccCCCCCCCCCCCCccchhhHhHhhhhccCCCcccccCchhhHHHHHHhcCc------hhhhhhhcC--CCCCcc
Q 014892 217 FSVGEYWDSCNYNSHGLDYNQDSHRQRIINWIDGTGQLSAAFDFTTKGILQEAVKGQ------FWRLRDAQG--KPPGVM 288 (416)
Q Consensus 217 ~~vgE~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~fdf~~~~~l~~~~~~~------~~~~~~~~~--~~~~~~ 288 (416)
+.+=|.|+.. =..|+...++..-.+|.+++..+...+... ...+.+..- +.....
T Consensus 219 lSilE~ws~n-----------------d~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~ 281 (809)
T PF02324_consen 219 LSILEAWSSN-----------------DPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDST 281 (809)
T ss_dssp --EESSSTTT-----------------HHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--
T ss_pred heeeeccccC-----------------ChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCc
Confidence 5677999762 113444445666788999998888886221 223333210 000000
Q ss_pred ccccCcceecccCCCCCC-----------CC---CCCCC-----------------------ChhhHHHHHHHHhcCC-C
Q 014892 289 GWWPSRAVTFLDNHDTGS-----------TQ---AHWPF-----------------------PSNHIMEGYAYILMHP-G 330 (416)
Q Consensus 289 ~~~p~~~~~fl~nHD~~R-----------~~---~~~~~-----------------------~~~~~~~a~a~llt~p-G 330 (416)
...+.....|+.+||.+- +. ..+.. ..-.+..++|+|||-. -
T Consensus 282 en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtNKDT 361 (809)
T PF02324_consen 282 ENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTNKDT 361 (809)
T ss_dssp SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-SSS
T ss_pred CCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhCCCC
Confidence 011224578999999951 10 00000 0113678999999865 9
Q ss_pred eeEEecCCcCC-------CchhHHHHHHHHHHHHHhCcccCCCCeEEEE-----ecCCEEEEEE
Q 014892 331 IPSVFYDHFYD-------WGDSIHNQIVKLMDVRRQQDIHSRSSIKILE-----AQSNLYSAII 382 (416)
Q Consensus 331 iP~Iy~G~E~g-------w~~~l~~~~~~Li~lR~~~~~l~~G~~~~~~-----~~~~~~~~~R 382 (416)
||.|||||-|- -..+.++.|..|++-|.++ ..|....-. .+.+++.-.|
T Consensus 362 VPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikY---vaGGQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 362 VPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKY---VAGGQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp EEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH-----S-EEEEE--EEETTTSEEEEEE
T ss_pred CceEEecccccccchhhhhcCchHHHHHHHHHHHHHh---hcCCceeeeecccCCCCceEEEEe
Confidence 99999998763 3457899999999999999 445444333 2346888887
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.54 E-value=1.8e-07 Score=95.05 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=66.6
Q ss_pred eeeccCceeEEEeeec-----CCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC---------CCCcccccCCCCC-
Q 014892 22 AVIRNGREILFQGFNW-----ESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---------PEGYLPQNLYSLN- 86 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~-----~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~---------~~GY~~~d~~~id- 86 (416)
+..+=.+.|||.+|-- +.+.+=+-.-|.+..+-+|++|||..||.|-+.+.. ..||+-+|-|.+.
T Consensus 558 snAALDSqvIYEgFSNFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~ 637 (809)
T PF02324_consen 558 SNAALDSQVIYEGFSNFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGM 637 (809)
T ss_dssp ESHHHHT-EEEE---TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSS
T ss_pred echhhhcchhhccccccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcC
Confidence 3344456899999862 111223678899999999999999999999998752 3799999999885
Q ss_pred ---CCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 87 ---SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 87 ---~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
..||+.+||+..|+++|+.||+||.|+|++.+-.
T Consensus 638 s~ptKYGs~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 638 SKPTKYGSVEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp SS-BTTB-HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 7899999999999999999999999999997754
No 47
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.50 E-value=7.7e-07 Score=85.83 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=80.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCcccccCCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~--~~GY~~~d~~~id~~~G--t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
+-+.+.+.|+.|+++|+|+|.+-=-..... ..-+.|..-+......+ +.+=|+.+|++||++||+|..=+.+...+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 467899999999999999998732111110 01111211111111111 25669999999999999999765443322
Q ss_pred CCCC-CCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 120 GTTQ-GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 120 ~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
.... .......++.....+| ...+.++ ..+..-||-.+|+||+++++.++-.++.|.|||+.+|
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~----~~~~~~~---------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGW----VRTYEDA---------NGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD 161 (311)
T ss_pred CchhhhhhcCchhheecCCCc----eeecccC---------CCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 2100 0000000110000001 1111000 1223348999999999999999999999999999999
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.38 E-value=5.8e-06 Score=69.24 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=77.6
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCC--cccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc--cC-cCCCC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEG--YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN--HR-VGTTQ 123 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~G--Y~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N--H~-~~~~~ 123 (416)
.+-+++||++|+|+|-+.- .+-|| |-|+......|.++ .+-|+++|++||++||+|+.=+-++ .. ...||
T Consensus 3 ~~~~~~lk~~~v~si~i~a----~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFA----KCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDFSWDEDAAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEc----ccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEeeecChHHHHhCC
Confidence 4568899999999998742 11233 55666667788888 7889999999999999999644443 11 11222
Q ss_pred CCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014892 124 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 197 (416)
Q Consensus 124 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~ 197 (416)
+|.-. ..+|...........+...+...+|. ++++++.++-.++.|.+||+=+|.
T Consensus 78 --------------eW~~~----~~~G~~~~~~~~~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 78 --------------EWFVR----DADGRPMRGERFGYPGWYTCCLNSPY-REFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred --------------ceeeE----CCCCCCcCCCCcCCCCceecCCCccH-HHHHHHHHHHHHHcCCCCEEEecC
Confidence 22210 11111000000001112223344454 589999999999899999998873
No 49
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=98.23 E-value=4.6e-06 Score=58.64 Aligned_cols=53 Identities=58% Similarity=1.072 Sum_probs=43.9
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcCCCCCCCCCCcEEeeeCCceEEeeC
Q 014892 364 SRSSIKILEAQSNLYSAIIGDKVCMKIGDGSWCPAGKEWTLATSGHKYAVWHK 416 (416)
Q Consensus 364 ~~G~~~~~~~~~~~~~~~R~~~~lvvinn~~~~~~~~~~~~~ls~~~~~~~~~ 416 (416)
.+...+++.++.++|+...+++++|=|++.+..|++..|+++.+|.+|+||++
T Consensus 7 ~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp~~~~P~~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 7 CRSKVKILAAEADLYAAIIDDKVIMKIGPRDWSPSGSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp TT--EEEEEEETTEEEEEETTTEEEEESS-GGS---TTEEEEEEETTEEEEEE
T ss_pred CCCceEEEEecCCcEEEEECCeEEEEECCCccccCCCCcEEEeECCcEEEEeC
Confidence 45678889999999999999999999999999997789999999999999985
No 50
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=98.07 E-value=1.3e-05 Score=62.33 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCcccCCCCeEEEEe----cCCEEEEEE---CCEEEEEEcCCCC
Q 014892 349 QIVKLMDVRRQQDIHSRSSIKILEA----QSNLYSAII---GDKVCMKIGDGSW 395 (416)
Q Consensus 349 ~~~~Li~lR~~~~~l~~G~~~~~~~----~~~~~~~~R---~~~~lvvinn~~~ 395 (416)
+||+||+|||++|+|+.|+...+.. ++.+++++| +++++|++|.+..
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 6999999999999999998887763 345777777 4578888888764
No 51
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=1.1e-05 Score=84.16 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=73.0
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCcccccCCCCCCCCC------CHHHHHHHHHHHHHC-CCEEEEEEc
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYG------SEHLLKALLHKMKQH-KVRAMADIV 114 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~G------t~~d~~~Lv~~aH~~-Gi~VilD~V 114 (416)
|-|+.=..+|.-+|+-|.|.|+++|+.+-. +..-|...|-..+++.+- +.||.++||+.+|+- +|--|-|+|
T Consensus 139 Gpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~DvV 218 (1521)
T KOG3625|consen 139 GPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFEDVGQLVEKLKREWNVLSITDVV 218 (1521)
T ss_pred CChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHHHHHHHHHHHHhhcCeeeeehhh
Confidence 556667788999999999999999999876 467899999999998886 789999999999975 999999999
Q ss_pred cccCcCCCCC
Q 014892 115 INHRVGTTQG 124 (416)
Q Consensus 115 ~NH~~~~~~~ 124 (416)
+||++.+++|
T Consensus 219 ~NHtAnns~W 228 (1521)
T KOG3625|consen 219 YNHTANNSKW 228 (1521)
T ss_pred hhccccCCch
Confidence 9999999875
No 52
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=0.00011 Score=72.38 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=78.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCC----CCccccc-----CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAP----EGYLPQN-----LYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~----~GY~~~d-----~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
+=+.+++.|+.|+.||||+|+.. ....++ .-..|.. ...+++ +-+=|+.+|++||++||+|+-=+-
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~q--V~~~G~~lypS~~~p~s~~~~~~~~~~~---g~DpLa~~I~~AHkr~l~v~aWf~ 136 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQ--VWNDGDALYPSAVLPWSDGLPGVLGVDP---GYDPLAFVIAEAHKRGLEVHAWFN 136 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEE--EecCccccccccccccccCcCcccCCCC---CCChHHHHHHHHHhcCCeeeechh
Confidence 45678999999999999999953 222111 1111110 011222 345689999999999999986443
Q ss_pred cccCcCCCCCCCCcccccCCCCCCCCC----CceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014892 115 INHRVGTTQGHGGKYNRYDGIPLSWDE----HAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGF 190 (416)
Q Consensus 115 ~NH~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gv 190 (416)
+--++.... .+.. ....|-. .......+++ . ...=||-.+|+||++|.+.+.-.++.|.|
T Consensus 137 ~~~~a~~~s----~~~~---~~p~~~~~~~~~~~~~~~~~~--------~-~~~~ldPg~Pevq~~i~~lv~evV~~Ydv 200 (418)
T COG1649 137 PYRMAPPTS----PLTK---RHPHWLTTKRPGWVYVRHQGW--------G-KRVWLDPGIPEVQDFITSLVVEVVRNYDV 200 (418)
T ss_pred hcccCCCCC----hhHh---hCCCCcccCCCCeEEEecCCc--------e-eeeEeCCCChHHHHHHHHHHHHHHhCCCC
Confidence 333333211 0000 0011110 0011111111 0 12337788999999999999999999999
Q ss_pred CeEEeccc
Q 014892 191 QDFRFDFA 198 (416)
Q Consensus 191 DGfRlD~a 198 (416)
||+.||--
T Consensus 201 DGIQfDd~ 208 (418)
T COG1649 201 DGIQFDDY 208 (418)
T ss_pred Cceeccee
Confidence 99999953
No 53
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=97.71 E-value=0.00026 Score=50.23 Aligned_cols=51 Identities=55% Similarity=0.890 Sum_probs=44.8
Q ss_pred CCCCeEEEEecCCEEEEEECCEEEEEEcCC----CCCCCCCCcEEeeeCCceEEeeC
Q 014892 364 SRSSIKILEAQSNLYSAIIGDKVCMKIGDG----SWCPAGKEWTLATSGHKYAVWHK 416 (416)
Q Consensus 364 ~~G~~~~~~~~~~~~~~~R~~~~lvvinn~----~~~~~~~~~~~~ls~~~~~~~~~ 416 (416)
.+.+.+++.++.++|+...++++++=|++. +..|+ +|+++.||.+|+||++
T Consensus 7 ~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~--~w~~a~sG~~yaVWek 61 (61)
T smart00810 7 SRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPS--GFHLAASGNDYAVWEK 61 (61)
T ss_pred CCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCC--CCEEEEECCCEEEEeC
Confidence 466788889999999999999999999995 56665 5999999999999986
No 54
>PLN02635 disproportionating enzyme
Probab=97.66 E-value=0.0024 Score=65.69 Aligned_cols=61 Identities=15% Similarity=0.036 Sum_probs=44.5
Q ss_pred eeeeccCceeEEEeeecCCCC-CCcHHH-HHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCccccc
Q 014892 21 RAVIRNGREILFQGFNWESCK-HDWWRN-LERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQN 81 (416)
Q Consensus 21 ~~~~~~~~~~~~q~f~~~~~~-~G~~~g-i~~~LdyLk~LGv~~I~L~Pi~~~~-----~~~GY~~~d 81 (416)
+.+-..+.||++|+|-=-..- =|||.. ..+-+|.+++.|.+.++|+|+++.. ....|.+.+
T Consensus 23 ~~~~~R~~Gvll~l~SLps~~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S 90 (538)
T PLN02635 23 RDAARRRAGILLHPTSLPGPYGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQD 90 (538)
T ss_pred ccCCCcceEEEEccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccc
Confidence 334445579999999744333 389976 5589999999999999999998763 244555544
No 55
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=97.62 E-value=0.0068 Score=62.23 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=41.9
Q ss_pred cCceeEEEeeec-CCCCCCcHH-HHHhhhhhHHHcCCCEEEeCCCCCCC-CCCCccccc
Q 014892 26 NGREILFQGFNW-ESCKHDWWR-NLERKVPDISKSGFTSVWLPPATHSF-APEGYLPQN 81 (416)
Q Consensus 26 ~~~~~~~q~f~~-~~~~~G~~~-gi~~~LdyLk~LGv~~I~L~Pi~~~~-~~~GY~~~d 81 (416)
..-|+++|+|-= ....=|||. .+.+-++.+++.|++.|+|+|+.+.. ....|.+.+
T Consensus 5 R~~Gv~~~l~SL~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~~~SPY~~~S 63 (497)
T PRK14508 5 RKSGILLHITSLPGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGYGDSPYQSFS 63 (497)
T ss_pred CceEEEeccccCCCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCcCccc
Confidence 345899999854 223348995 99999999999999999999999754 123455433
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.46 E-value=0.0012 Score=63.72 Aligned_cols=136 Identities=11% Similarity=0.112 Sum_probs=84.8
Q ss_pred CcHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 43 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
-+-+.|.+.++.++++|| ++|+|=.-+... . .| +..|+ +|- +.++||+++|++|+|+++=+-+ +++
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~--~----g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~ 95 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWETC--Y----GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FIN 95 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCcccc--C----Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeC
Confidence 368889999999999994 677774322211 1 12 34443 665 4789999999999999997776 455
Q ss_pred CCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 120 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
.+++.+.. .. .........++. .+..+..+ ....-+|+.||++|+...+.++.++.+.|||||-+|..
T Consensus 96 ~~s~~~~e----~~------~~g~~vk~~~g~-~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 164 (303)
T cd06592 96 TDSENFRE----AV------EKGYLVSEPSGD-IPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAG 164 (303)
T ss_pred CCCHHHHh----hh------hCCeEEECCCCC-CCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCC
Confidence 44321110 00 000001111110 01111111 11334899999999999999999988999999999986
Q ss_pred CC
Q 014892 199 RG 200 (416)
Q Consensus 199 ~~ 200 (416)
..
T Consensus 165 E~ 166 (303)
T cd06592 165 EA 166 (303)
T ss_pred Cc
Confidence 53
No 57
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.44 E-value=0.001 Score=64.28 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=88.5
Q ss_pred CcHHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCcccccCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 43 DWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LG--v~~I~L~Pi~~~~~~~GY~~~d~~~id-~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.+-+.+.+.++.+++.| +++|||=.=+.. +|.-.| +..| .+|.. .++||+++|++|++|++-+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FPd---~~~~i~~l~~~G~~~~~~~~P-~i~ 91 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFPD---PEGMLSRLKEKGFKVCLWINP-YIA 91 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCCC---HHHHHHHHHHCCCeEEEEecC-CCC
Confidence 46778899999999999 777887654432 222223 4555 46654 689999999999999998876 566
Q ss_pred CCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 120 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
.+++.+.. ... ..+ +....++.. .....+ ....-+|+.||++++...+.++.++ +.|||||-+|..
T Consensus 92 ~~~~~~~e----~~~--~g~----~v~~~~g~~--~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gid~~~~D~~ 158 (308)
T cd06593 92 QKSPLFKE----AAE--KGY----LVKKPDGSV--WQWDLWQPGMGIIDFTNPDACKWYKDKLKPLL-DMGVDCFKTDFG 158 (308)
T ss_pred CCchhHHH----HHH--CCe----EEECCCCCe--eeecccCCCcccccCCCHHHHHHHHHHHHHHH-HhCCcEEecCCC
Confidence 55432110 000 000 000011110 000111 1223479999999999999999887 799999999988
Q ss_pred CCCcH
Q 014892 199 RGYSA 203 (416)
Q Consensus 199 ~~~~~ 203 (416)
..+|.
T Consensus 159 e~~p~ 163 (308)
T cd06593 159 ERIPT 163 (308)
T ss_pred CCCCc
Confidence 76553
No 58
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.29 E-value=0.00087 Score=65.66 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=82.1
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCC-----CCCcc------cccC--CCCC--CCCCCHHHHHHHHHHHHHCC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFA-----PEGYL------PQNL--YSLN--SSYGSEHLLKALLHKMKQHK 106 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~-----~~GY~------~~d~--~~id--~~~Gt~~d~~~Lv~~aH~~G 106 (416)
+-+.+.+-++.+++.|| ++|+|=+...... +..|. +..+ +..+ .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 67888999999999886 7888864221100 11121 1111 1111 2333 6899999999999
Q ss_pred CEEEEEEccccCcCC-CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 014892 107 VRAMADIVINHRVGT-TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 185 (416)
Q Consensus 107 i~VilD~V~NH~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~ 185 (416)
+||++=+.+ ++..+ ++. ...+..+.. ...........++........+.....-+|+.||++++...+.++.++
T Consensus 99 ~kv~l~v~P-~i~~~~~~~-~~~~~~~~~---~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~ 173 (340)
T cd06597 99 VKVLLWQIP-IIKLRPHPH-GQADNDEDY---AVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLV 173 (340)
T ss_pred CEEEEEecC-ccccccccc-cccchhHHH---HHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHH
Confidence 999985444 33221 110 000000100 000000111111111000011112234589999999999999999998
Q ss_pred HhcCCCeEEecccCC
Q 014892 186 NTVGFQDFRFDFARG 200 (416)
Q Consensus 186 ~~~gvDGfRlD~a~~ 200 (416)
++.|||||-+|+...
T Consensus 174 ~~~Gidg~w~D~~E~ 188 (340)
T cd06597 174 DELGIDGFKTDGGEH 188 (340)
T ss_pred HhcCCcEEEecCCCc
Confidence 789999999998754
No 59
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.22 E-value=0.007 Score=60.23 Aligned_cols=135 Identities=11% Similarity=0.003 Sum_probs=82.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeC-CCCCCCC----CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLP-PATHSFA----PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~-Pi~~~~~----~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+-+.|.+.++.++++|++.+.|= -.+.... ..|.+..| ..+|- ..++.|++.+|++||+.=|=+-+--+
T Consensus 56 ~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~----~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v 129 (394)
T PF02065_consen 56 TEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD----PKKFP--NGLKPLADYIHSLGMKFGLWFEPEMV 129 (394)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB----TTTST--THHHHHHHHHHHTT-EEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC----hhhhC--CcHHHHHHHHHHCCCeEEEEeccccc
Confidence 56778888889999999988872 2222111 12333322 23553 35999999999999999987777666
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 119 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
+.++...+....|.-. . .+... .. .....-||+.+|+|++++.+.+...+++.|||.+.+|..
T Consensus 130 ~~~S~l~~~hPdw~l~-----~-------~~~~~--~~---~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n 192 (394)
T PF02065_consen 130 SPDSDLYREHPDWVLR-----D-------PGRPP--TL---GRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFN 192 (394)
T ss_dssp ESSSCHCCSSBGGBTC-----C-------TTSE---EC---BTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-T
T ss_pred cchhHHHHhCccceee-----c-------CCCCC--cC---cccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 6665543322222110 0 00000 00 011234899999999999999999888999999999986
Q ss_pred CCC
Q 014892 199 RGY 201 (416)
Q Consensus 199 ~~~ 201 (416)
..+
T Consensus 193 ~~~ 195 (394)
T PF02065_consen 193 RDI 195 (394)
T ss_dssp S-T
T ss_pred cCC
Confidence 544
No 60
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.06 E-value=0.0048 Score=59.90 Aligned_cols=137 Identities=14% Similarity=0.067 Sum_probs=78.7
Q ss_pred HHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 45 WRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id-~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
=+.|.+-++.+++.|| ++|||-+=+.......+ .+ +..| .+|- +.++||+++|++|+||++-+.+ +++.+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~--~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P-~i~~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKR--YV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKP-GLLQD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCce--ee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCC-cccCC
Confidence 4578888888998886 78887542221100001 11 3444 3554 5779999999999999995544 44443
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 199 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~ 199 (416)
++. |.-... ..+ .....++.. +..+..+.+ ..-+|+.||++++...+.++..+.+.|||||=+|...
T Consensus 101 ~~~----y~e~~~--~g~----~v~~~~g~~-~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 168 (317)
T cd06599 101 HPR----YKELKE--AGA----FIKPPDGRE-PSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNE 168 (317)
T ss_pred CHH----HHHHHH--CCc----EEEcCCCCC-cceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 331 100000 000 000011110 011111221 2248899999999999988655558999999999765
No 61
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.79 E-value=0.0097 Score=61.55 Aligned_cols=146 Identities=13% Similarity=0.095 Sum_probs=74.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCC-CCCCCccc----ccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHS-FAPEGYLP----QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~-~~~~GY~~----~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+.....+.|+.|+.+-||+|++==.+-. ..+.+-.. ..|..+.-+-=..+-+|.+|++||+.||++|.=.-+.-.
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa 195 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAA 195 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcc
Confidence 6788899999999999999997322211 00000000 112223223334688999999999999999974333322
Q ss_pred cCCCC--CCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 119 VGTTQ--GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 119 ~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
..+.. +..+.|..|...... .......+++|. ..+-=+|-.||+=|++|++-++..++.+|+|||.+|
T Consensus 196 ~~~~~~~gv~~eW~ly~d~~~~--~~~~~~l~~~w~--------s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlD 265 (559)
T PF13199_consen 196 NNNYEEDGVSPEWGLYKDDSHS--NQDTYDLPDGWP--------SDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLD 265 (559)
T ss_dssp ETT--S--SS-GGBEEESSSBT--SB-EEEETT-E----------EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred ccCcccccCCchhhhhhccCCC--ccceeecCcccc--------cceEEecCCCHHHHHHHHHHHHHHHHccCCceEeee
Confidence 22211 122233333221000 000111111111 113347889999999999999999999999999999
Q ss_pred ccC
Q 014892 197 FAR 199 (416)
Q Consensus 197 ~a~ 199 (416)
...
T Consensus 266 q~G 268 (559)
T PF13199_consen 266 QLG 268 (559)
T ss_dssp -S-
T ss_pred ccC
Confidence 864
No 62
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.60 E-value=0.069 Score=51.41 Aligned_cols=133 Identities=20% Similarity=0.233 Sum_probs=81.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCC-CCCCCCC----CHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLY-SLNSSYG----SEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~-~id~~~G----t~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+=+.+.+.|+.|++-|+|+|-+- -...+|.-..+.- ......| ...|+++|++.||++||.+|.=+|.=-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk- 85 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK- 85 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-
Confidence 44568888999999999999863 2233442222110 0111122 246899999999999999999887631
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 119 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
+..... ..++|. ....+|.. +. +..+..=+|--+++|++|++++++... ..|+|.+.||-+
T Consensus 86 --D~~la~--------~~pe~a----v~~~~G~~--w~--d~~~~~WvnP~~~evw~Y~i~IA~Eaa-~~GFdEIqfDYI 146 (316)
T PF13200_consen 86 --DPVLAE--------AHPEWA----VKTKDGSV--WR--DNEGEAWVNPYSKEVWDYNIDIAKEAA-KLGFDEIQFDYI 146 (316)
T ss_pred --ChHHhh--------hChhhE----EECCCCCc--cc--CCCCCccCCCCCHHHHHHHHHHHHHHH-HcCCCEEEeeee
Confidence 110000 001111 11111111 11 112234477789999999999999987 899999999987
Q ss_pred CC
Q 014892 199 RG 200 (416)
Q Consensus 199 ~~ 200 (416)
..
T Consensus 147 RF 148 (316)
T PF13200_consen 147 RF 148 (316)
T ss_pred ec
Confidence 43
No 63
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=96.34 E-value=0.013 Score=67.38 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--cHHHHHHHHH
Q 014892 158 DNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIE 211 (416)
Q Consensus 158 ~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~--~~~~~~~~~~ 211 (416)
.+..++.-+..++|+|-+..-..+..|+++=-|||+|+|.+.++ |..+++.+.+
T Consensus 1036 FdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~dP~~Yl~rLr~ 1091 (1693)
T PRK14507 1036 FDINSLAALRMERPDVFEATHALLFRLIAEGRIDGLRIDHPDGLADPAGYFRRLQA 1091 (1693)
T ss_pred ecchhheeeeccCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHH
Confidence 34578888999999999999999999998999999999999887 4667777754
No 64
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.34 E-value=0.0087 Score=58.05 Aligned_cols=142 Identities=14% Similarity=0.100 Sum_probs=84.0
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCC--CCCCCcc-cccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHS--FAPEGYL-PQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~--~~~~GY~-~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
+-+.+.+.++.+++.|| ++|||- .+.. ....|+. ..+ +..|+ +|- +.++||+++|++|++||+-+ -.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i-~P~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYI-NPY 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEe-cCc
Confidence 68889999999999765 678885 3311 0122332 112 34454 454 47899999999999999944 445
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 118 RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 118 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
+..+.+.. |..-.. . .......++. +.....+ ....-+|+.||++++...+-++..+.+.|||||=+|
T Consensus 95 v~~~~~~~---y~~~~~--~----g~~vk~~~g~--~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D 163 (317)
T cd06594 95 LADDGPLY---YEEAKD--A----GYLVKDADGS--PYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMAD 163 (317)
T ss_pred eecCCchh---HHHHHH--C----CeEEECCCCC--eeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEec
Confidence 55433210 110000 0 0011111111 0111111 122458999999999999999887568999999999
Q ss_pred ccCCCc
Q 014892 197 FARGYS 202 (416)
Q Consensus 197 ~a~~~~ 202 (416)
+-..++
T Consensus 164 ~~E~~p 169 (317)
T cd06594 164 FGEYLP 169 (317)
T ss_pred CCCCCC
Confidence 766443
No 65
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.33 E-value=0.019 Score=50.16 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=58.3
Q ss_pred ceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCC--cccccCCCCCCCCCCHHHHHHHHHHHHHC
Q 014892 28 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEG--YLPQNLYSLNSSYGSEHLLKALLHKMKQH 105 (416)
Q Consensus 28 ~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~G--Y~~~d~~~id~~~Gt~~d~~~Lv~~aH~~ 105 (416)
+|+++|.+.|+...+=+-+.=.+.+.++|++||++|-|. ..++.+ +-|..++.-.-..+..+-+..+.++|.+.
T Consensus 2 tGtF~q~~~~d~~~~~~~~~W~~~~~~m~~~GidtlIlq----~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 2 TGTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTLILQ----WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY 77 (166)
T ss_pred ceEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEEEEE----EeecCCcccCCccccCccccCCcccHHHHHHHHHHHc
Confidence 378899999875222234455678999999999999876 222333 22443321122235677899999999999
Q ss_pred CCEEEEEEccc
Q 014892 106 KVRAMADIVIN 116 (416)
Q Consensus 106 Gi~VilD~V~N 116 (416)
||+|++-+-++
T Consensus 78 Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 78 GMKVFVGLYFD 88 (166)
T ss_pred CCEEEEeCCCC
Confidence 99999977655
No 66
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.26 E-value=0.069 Score=56.57 Aligned_cols=151 Identities=12% Similarity=0.089 Sum_probs=86.0
Q ss_pred eeccCceeEEEe---eecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCC----CCcccccCCCC-CCCCCCHHH
Q 014892 23 VIRNGREILFQG---FNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP----EGYLPQNLYSL-NSSYGSEHL 94 (416)
Q Consensus 23 ~~~~~~~~~~q~---f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~----~GY~~~d~~~i-d~~~Gt~~d 94 (416)
...++..+++|+ +.-+-.....-+.+...|+.||++|+|+|+|--+....++ .-|-|.++.-+ ++-|.. -.
T Consensus 308 ~~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~~-~a 386 (671)
T PRK14582 308 VQEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFNR-VA 386 (671)
T ss_pred ccCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcCH-HH
Confidence 344677788888 2222223346789999999999999999999776544321 12444433332 222222 12
Q ss_pred HHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHH
Q 014892 95 LKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVR 174 (416)
Q Consensus 95 ~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~ 174 (416)
++ -+|++|++|..=+-+=-.+-...-... ..+.. +... ......+ ...|+-.+|+||
T Consensus 387 w~----l~~r~~v~v~AWmp~~~~~~~~~~~~~---------~~~~~-------~~~~-~~~~~~~--~~rl~P~~pe~r 443 (671)
T PRK14582 387 WQ----LRTRAGVNVYAWMPVLSFDLDPTLPRV---------KRLDT-------GEGK-AQIHPEQ--YRRLSPFDDRVR 443 (671)
T ss_pred HH----HHHhhCCEEEEeccceeeccCCCcchh---------hhccc-------cCCc-cccCCCC--CcCCCCCCHHHH
Confidence 22 299999999863322111110000000 00000 0000 0000001 223888899999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecc
Q 014892 175 KDIIAWLRWLRNTVGFQDFRFDF 197 (416)
Q Consensus 175 ~~l~~~~~~w~~~~gvDGfRlD~ 197 (416)
+.|.++..-.++.+.|||+-||-
T Consensus 444 ~~i~~i~~dla~~~~~dGilf~D 466 (671)
T PRK14582 444 AQVGMLYEDLAGHAAFDGILFHD 466 (671)
T ss_pred HHHHHHHHHHHHhCCCceEEecc
Confidence 99999999999888999999873
No 67
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=96.23 E-value=0.0041 Score=64.69 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=49.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--cHHHHHHHHHhcCC-ceEEEc
Q 014892 160 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY--SAKYVKEYIEGARP-IFSVGE 221 (416)
Q Consensus 160 ~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~--~~~~~~~~~~~~~~-~~~vgE 221 (416)
..++.-+..+.++|-+.--.-+..|+++==|||.|+|.+.++ |..+++.+++.+-| .+++-|
T Consensus 267 Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VE 331 (889)
T COG3280 267 VNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVE 331 (889)
T ss_pred ccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEe
Confidence 467888999999999999999999998888999999999887 46677777776653 344333
No 68
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.18 E-value=0.013 Score=56.92 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=77.8
Q ss_pred CcHHHHHhhhhhHHHc--CCCEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 43 DWWRNLERKVPDISKS--GFTSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 43 G~~~gi~~~LdyLk~L--Gv~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.+-+.+.+.++.+++. -+++|+|=--+- ...|+ .+ +..|+ +|-. .++||+++|++|+|||+-+. .+++
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~--~~-f~~d~~~FPd---p~~mi~~L~~~G~kv~~~i~-P~v~ 91 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYW--PKQGW--GE-WKFDPERFPD---PKAMVRELHEMNAELMISIW-PTFG 91 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhh--cCCCc--ee-EEEChhhCCC---HHHHHHHHHHCCCEEEEEec-CCcC
Confidence 3677788888888876 567777742111 11121 12 34443 5544 57899999999999999554 4455
Q ss_pred CCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 120 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
.+++. |.-... .. ......++.. .. ..+ ....-+|+.||++++...+.++..+.+.|||||=+|..
T Consensus 92 ~~~~~----y~e~~~--~g----~~v~~~~g~~--~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 158 (319)
T cd06591 92 PETEN----YKEMDE--KG----YLIKTDRGPR--VT-MQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAA 158 (319)
T ss_pred CCChh----HHHHHH--CC----EEEEcCCCCe--ee-eeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCC
Confidence 43321 110000 00 0000011110 00 111 11345899999999998877765445999999999987
Q ss_pred CC
Q 014892 199 RG 200 (416)
Q Consensus 199 ~~ 200 (416)
..
T Consensus 159 Ep 160 (319)
T cd06591 159 EP 160 (319)
T ss_pred CC
Confidence 53
No 69
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.14 E-value=0.04 Score=51.95 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=53.1
Q ss_pred cCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 014892 26 NGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLNSSYGSEHLLKALLHKMK 103 (416)
Q Consensus 26 ~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~--~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH 103 (416)
+|+++..++|...... + .-+.+-++.||++|+|+|=|.-.++... ..+| .+++ ...+.|+++|++|+
T Consensus 4 ~G~~v~~~G~n~~w~~--~-~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~~--~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--P-SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYDE--TYLARLDRIVDAAQ 72 (281)
T ss_dssp TSEBEEEEEEEETTSG--G-GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBTH--HHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCC--C-CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------cccH--HHHHHHHHHHHHHH
Confidence 5777788888754100 1 1677889999999999998865432210 1111 1111 23688999999999
Q ss_pred HCCCEEEEEEccc
Q 014892 104 QHKVRAMADIVIN 116 (416)
Q Consensus 104 ~~Gi~VilD~V~N 116 (416)
++||+||+|+--.
T Consensus 73 ~~gi~vild~h~~ 85 (281)
T PF00150_consen 73 AYGIYVILDLHNA 85 (281)
T ss_dssp HTT-EEEEEEEES
T ss_pred hCCCeEEEEeccC
Confidence 9999999998543
No 70
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.00 E-value=0.065 Score=52.52 Aligned_cols=141 Identities=10% Similarity=0.128 Sum_probs=79.1
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.+.+.++.+++.|| ++|||-.-+.. +|. + +..|+ +|-.+. -++||+++|++|+||++=+.+ ++..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~--~-f~~d~~~FPdp~-~~~mi~~L~~~G~k~~~~i~P-~v~~ 92 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRR--D-FTLDPVRFPGLK-MPEFVDELHANGQHYVPILDP-AISA 92 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECccccc----Ccc--c-eecccccCCCcc-HHHHHHHHHHCCCEEEEEEeC-cccc
Confidence 56778888888888775 67777432211 121 1 33332 343321 189999999999999996543 3433
Q ss_pred CCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014892 121 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 199 (416)
Q Consensus 121 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~ 199 (416)
+.. .+.|..|... -.........++ .+..+..+ ....-+|+.||++++...+.++.++.+.|||||=+|...
T Consensus 93 ~~~--~~~~~~~~e~---~~~g~~v~~~~g--~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 93 NEP--TGSYPPYDRG---LEMDVFIKNDDG--SPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred CcC--CCCCHHHHHH---HHCCeEEECCCC--CEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 211 0112111100 000000110111 01001111 112336899999999999999988877999999999875
Q ss_pred C
Q 014892 200 G 200 (416)
Q Consensus 200 ~ 200 (416)
.
T Consensus 166 p 166 (339)
T cd06602 166 P 166 (339)
T ss_pred C
Confidence 4
No 71
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.96 E-value=0.064 Score=52.04 Aligned_cols=137 Identities=10% Similarity=0.106 Sum_probs=78.5
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCC-C-CCCcccccCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSF-A-PEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~-~-~~GY~~~d~~~id-~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+-+.+.+.++.+++.|| ++|+|-.=+-.. . ...|. | +..| .+|-. .++||+++|++|+||++=+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FPd---p~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFPD---PAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCCC---HHHHHHHHHHcCCcEEEEEcC-cc
Confidence 56778888888888775 677775422110 0 01111 2 3334 35654 578999999999999997653 34
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCC-CCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014892 119 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDN-FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 197 (416)
Q Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~ 197 (416)
..+++. |.-... ..+ -+....++. +..... ....--+|+.||++++...+.++.+. +.|||||=+|.
T Consensus 95 ~~~~~~----y~e~~~--~g~---l~~~~~~~~--~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~-~~Gvdg~w~D~ 162 (317)
T cd06598 95 LKNSKN----WGEAVK--AGA---LLKKDQGGV--PTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI-DQGVTGWWGDL 162 (317)
T ss_pred cCCchh----HHHHHh--CCC---EEEECCCCC--EeeeeccCCCccccCCCCHHHHHHHHHHHHHhh-hCCccEEEecC
Confidence 443331 100000 000 001101110 000000 11123467899999999999998875 89999999998
Q ss_pred cC
Q 014892 198 AR 199 (416)
Q Consensus 198 a~ 199 (416)
..
T Consensus 163 ~E 164 (317)
T cd06598 163 GE 164 (317)
T ss_pred CC
Confidence 64
No 72
>PRK10658 putative alpha-glucosidase; Provisional
Probab=94.94 E-value=0.051 Score=57.96 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCC-CCCCCCCcCCCCCHH
Q 014892 94 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTG-DNFHGVPNIDHTQHF 172 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dln~~~~~ 172 (416)
+.+.||+++|++|+||++=+.+ +++.+++. |... -.........++.. +.. .+.....-+|+.||+
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~~-------f~e~---~~~gy~vk~~~G~~--~~~~~W~g~~~~~Dftnp~ 392 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQKSPL-------FKEG---KEKGYLLKRPDGSV--WQWDKWQPGMAIVDFTNPD 392 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCCCchH-------HHHH---HHCCeEEECCCCCE--eeeeecCCCceeecCCCHH
Confidence 4578999999999999986544 34443321 1100 00000111111111 111 111233458999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCc
Q 014892 173 VRKDIIAWLRWLRNTVGFQDFRFDFARGYS 202 (416)
Q Consensus 173 v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~ 202 (416)
+|+...+.++.++ +.|||||-.|....+|
T Consensus 393 ar~W~~~~~~~l~-d~Gvdgfw~D~gE~~p 421 (665)
T PRK10658 393 ACKWYADKLKGLL-DMGVDCFKTDFGERIP 421 (665)
T ss_pred HHHHHHHHHHHHH-hcCCcEEEecCCceee
Confidence 9999999999987 8999999999765444
No 73
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=94.94 E-value=0.1 Score=50.69 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=36.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.+.++.||+.|+|.|=|=- +..|.. ..+-+.++..+|.++|++.||+|+||+=
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~------------~g~~~~~~~~~~akrak~~Gm~vlldfH 79 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD------------GGYNDLEDVIALAKRAKAAGMKVLLDFH 79 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc------------cccCCHHHHHHHHHHHHHCCCeEEEeec
Confidence 5678899999999986632 222111 4556789999999999999999999993
No 74
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.099 Score=49.87 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=38.3
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..-++-|+.-.+.|++.|..+=.......+ +-..-|++|++.||+.||+||+|+-+
T Consensus 16 ~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~--------------~~~~~~~ell~~Anklg~~vivDvnP 71 (360)
T COG3589 16 EKDIAYIDRMHKYGFKRIFTSLLIPEEDAE--------------LYFHRFKELLKEANKLGLRVIVDVNP 71 (360)
T ss_pred hhHHHHHHHHHHcCccceeeecccCCchHH--------------HHHHHHHHHHHHHHhcCcEEEEEcCH
Confidence 344555666677888888765433332111 22456999999999999999999854
No 75
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=94.83 E-value=0.15 Score=47.72 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 170 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 170 (416)
+.++.++.|+.+|++|+||++=+--+|.+... ....+
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~-------------------------------------------~~~~~ 85 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF-------------------------------------------ANNLS 85 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc-------------------------------------------cccCC
Confidence 46889999999999999999966444332200 01124
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014892 171 HFVRKDIIAWLRWLRNTVGFQDFRFDF 197 (416)
Q Consensus 171 ~~v~~~l~~~~~~w~~~~gvDGfRlD~ 197 (416)
++-++.+.+.+..++..+|.||+=+|-
T Consensus 86 ~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 86 DAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 566778888888888899999999995
No 76
>PRK10426 alpha-glucosidase; Provisional
Probab=94.80 E-value=0.12 Score=54.86 Aligned_cols=140 Identities=10% Similarity=0.080 Sum_probs=76.0
Q ss_pred HHHHHhhhhhHHHcC--CCEEEeCCCCCCC--CCCCccc-ccCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 45 WRNLERKVPDISKSG--FTSVWLPPATHSF--APEGYLP-QNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 45 ~~gi~~~LdyLk~LG--v~~I~L~Pi~~~~--~~~GY~~-~d~~~id-~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
-+.+.+.++.+++.| +++|||- -+... ...|... -| +..| .+|- +.++||+++|++|+||++=+-+- +
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP---dp~~mi~~L~~~G~k~v~~i~P~-v 293 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP---QLDSRIKQLNEEGIQFLGYINPY-L 293 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---CHHHHHHHHHHCCCEEEEEEcCc-c
Confidence 355777788888877 5888884 12111 0111111 01 1233 2333 57889999999999999976543 3
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014892 119 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDF 197 (416)
Q Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~ 197 (416)
..+++ .|... -.........++.. .....+ ....-+|+.||++|+...+.++..+.+.|||||=+|.
T Consensus 294 ~~~~~-------~y~e~---~~~gy~vk~~~g~~--~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~ 361 (635)
T PRK10426 294 ASDGD-------LCEEA---AEKGYLAKDADGGD--YLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADF 361 (635)
T ss_pred CCCCH-------HHHHH---HHCCcEEECCCCCE--EEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeC
Confidence 33222 11100 00000011111110 000000 0112478999999999999887555599999999997
Q ss_pred cCCCc
Q 014892 198 ARGYS 202 (416)
Q Consensus 198 a~~~~ 202 (416)
...+|
T Consensus 362 ~E~~p 366 (635)
T PRK10426 362 GEYLP 366 (635)
T ss_pred CCCCC
Confidence 65443
No 77
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=94.78 E-value=0.073 Score=51.66 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=80.5
Q ss_pred CcHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 43 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.+-+.+.+.++.+++.|| ++|||-.=+. .+|.. +..|+ +|- +.++||+++|++|+||++=+.+ +++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~----~~~~~---f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P-~i~ 89 (317)
T cd06600 21 YPQDKVVEVVDIMQKEGFPYDVVFLDIHYM----DSYRL---FTWDPYRFP---EPKKLIDELHKRNVKLVTIVDP-GIR 89 (317)
T ss_pred CCHHHHHHHHHHHHHcCCCcceEEEChhhh----CCCCc---eeechhcCC---CHHHHHHHHHHCCCEEEEEeec-ccc
Confidence 467788888888888775 6777753221 12321 33343 454 5679999999999999995543 344
Q ss_pred CCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 120 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
.+.. +..|... ......+...++. +..+..+++ ..-+|+.||++++...+.++..+.+.|||||=+|..
T Consensus 90 ~~~~-----~~~~~~~---~~~~~~v~~~~g~--~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~ 159 (317)
T cd06600 90 VDQN-----YSPFLSG---MDKGKFCEIESGE--LFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMN 159 (317)
T ss_pred CCCC-----ChHHHHH---HHCCEEEECCCCC--eEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCC
Confidence 3211 1111100 0000011111111 011111111 224799999999999999998877999999999987
Q ss_pred CC
Q 014892 199 RG 200 (416)
Q Consensus 199 ~~ 200 (416)
..
T Consensus 160 Ep 161 (317)
T cd06600 160 EP 161 (317)
T ss_pred CC
Confidence 53
No 78
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=94.51 E-value=0.041 Score=54.02 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=40.8
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
++++...+-|.-.+++|++.|+.+=..+- +..=...+.|++|++.||+.||+||+|+-+.
T Consensus 11 ~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe--------------~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 11 SSFEENKAYIEKAAKYGFKRIFTSLHIPE--------------DDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp S-HHHHHHHHHHHHCTTEEEEEEEE-----------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCcCC--------------CCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 36777888888889999999987521111 0011136889999999999999999999554
No 79
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=93.74 E-value=0.049 Score=55.41 Aligned_cols=136 Identities=14% Similarity=0.255 Sum_probs=75.9
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.+.+-++.+++.|| ++|+|-.-+.. +|. + +..|+ +|- +.++|++.+|++|++|++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 46778888888887765 56665443222 111 2 34443 443 7899999999999999998887 3544
Q ss_pred CCCCCCCcccccCC-CCCCCCCCceecCCCCCCCCCCCCCCC-CCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 121 TTQGHGGKYNRYDG-IPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 121 ~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
+.+ .+..|.. ...++ .....++ .+..+..+. ...-+|+.||++++...+.++..+..+|||||-+|..
T Consensus 110 ~~~----~~~~~~~~~~~~~----~v~~~~g--~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~ 179 (441)
T PF01055_consen 110 DSP----DYENYDEAKEKGY----LVKNPDG--SPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFG 179 (441)
T ss_dssp TTT----B-HHHHHHHHTT-----BEBCTTS--SB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEEST
T ss_pred CCC----cchhhhhHhhcCc----eeecccC--CcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecC
Confidence 432 1111110 00000 0111111 001111111 1334789999999999999999987779999999995
Q ss_pred CC
Q 014892 199 RG 200 (416)
Q Consensus 199 ~~ 200 (416)
..
T Consensus 180 E~ 181 (441)
T PF01055_consen 180 EP 181 (441)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 80
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=93.67 E-value=0.9 Score=48.97 Aligned_cols=64 Identities=11% Similarity=0.227 Sum_probs=47.8
Q ss_pred CCCCcCCCC-----CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhc---CC-ceEEEcccCCC
Q 014892 161 HGVPNIDHT-----QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGA---RP-IFSVGEYWDSC 226 (416)
Q Consensus 161 ~~~~dln~~-----~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~---~~-~~~vgE~~~~~ 226 (416)
.+-.+|+|. +|.++++|.++...=. .=.||+|+|.++..|...-+-+.+++ +| .|.++|.+.+.
T Consensus 496 GDsVKLryG~kpeDsPyLWq~M~kY~e~tA--riFdG~RlDNcHsTPlHVaEylLd~ARk~nPnlYVvAELFtgS 568 (1521)
T KOG3625|consen 496 GDSVKLRYGNKPEDSPYLWQHMKKYTEITA--RIFDGVRLDNCHSTPLHVAEYLLDAARKLNPNLYVVAELFTGS 568 (1521)
T ss_pred cceeeeccCCCcccChHHHHHHHHHHHHHH--HHhcceeeccCCCCchhHHHHHHHHHHhcCCCeEEEeeeccCC
Confidence 444567775 4889999998877653 55799999999999877666555554 45 78999988763
No 81
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=93.46 E-value=0.76 Score=45.19 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=70.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeC-------C----CCCCCCCCC-cccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLP-------P----ATHSFAPEG-YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~-------P----i~~~~~~~G-Y~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
..+-|.+.+|.++.+++|.++|- | -++.-...| |.+ + .+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~------~-~~YT~~di~eiv~yA~~rgI~vIP 88 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSP------S-EVYTPEDVKEIVEYARLRGIRVIP 88 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCC------C-ceECHHHHHHHHHHHHHcCCEEEE
Confidence 36677788888899999999872 1 111111111 221 1 112899999999999999999998
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcC
Q 014892 112 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 189 (416)
Q Consensus 112 D~-V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~g 189 (416)
.+ +|.|+..-... | +.-.+...+.+.. .+.-.....||..+|++.+++.+++...++-+.
T Consensus 89 EID~PGH~~a~~~~----~-----------p~l~~~~~~~~~~---~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~ 149 (348)
T cd06562 89 EIDTPGHTGSWGQG----Y-----------PELLTGCYAVWRK---YCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFP 149 (348)
T ss_pred eccCchhhHHHHHh----C-----------hhhhCCCCccccc---cccCCCCccccCCChhHHHHHHHHHHHHHHhcC
Confidence 87 34555441110 0 0000000000000 000011224889999999999999998886443
No 82
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=93.43 E-value=0.29 Score=50.58 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=25.7
Q ss_pred CcH-HHHHhhhhhHHHcCCCEEEeCCCCCCCC--CCCcccccCCCCC
Q 014892 43 DWW-RNLERKVPDISKSGFTSVWLPPATHSFA--PEGYLPQNLYSLN 86 (416)
Q Consensus 43 G~~-~gi~~~LdyLk~LGv~~I~L~Pi~~~~~--~~GY~~~d~~~id 86 (416)
||| ..+.+-++.+++.|+..+.|.|+++... +..|.+.+-++++
T Consensus 15 GDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alN 61 (496)
T PF02446_consen 15 GDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALN 61 (496)
T ss_dssp --SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS--
T ss_pred ecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCC
Confidence 799 9999999999999999999999997642 2367777666655
No 83
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=93.35 E-value=0.78 Score=47.47 Aligned_cols=46 Identities=9% Similarity=-0.067 Sum_probs=35.8
Q ss_pred cCceeEEEeeecCCC-CCCcHHHHH-hhhhhHHHcCCCEEEeCCCCCC
Q 014892 26 NGREILFQGFNWESC-KHDWWRNLE-RKVPDISKSGFTSVWLPPATHS 71 (416)
Q Consensus 26 ~~~~~~~q~f~~~~~-~~G~~~gi~-~~LdyLk~LGv~~I~L~Pi~~~ 71 (416)
..-||++|+|-=.+. .=|||..+. .-++.+++.|....+|.|+++.
T Consensus 14 R~~Gvll~l~SL~s~~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 14 RKSGILLQLYSLPSEWGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred CceEEEeccccCCCCCCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 356899999975443 338998887 5568889988998899999874
No 84
>smart00632 Aamy_C Aamy_C domain.
Probab=92.72 E-value=0.33 Score=36.83 Aligned_cols=35 Identities=17% Similarity=0.058 Sum_probs=26.2
Q ss_pred cCCEEEEEECCEEEEEEcCCCCC--------CCCCCcEEeeeC
Q 014892 374 QSNLYSAIIGDKVCMKIGDGSWC--------PAGKEWTLATSG 408 (416)
Q Consensus 374 ~~~~~~~~R~~~~lvvinn~~~~--------~~~~~~~~~ls~ 408 (416)
++++++|.|+++.+|+||++... .+.|.|+++++|
T Consensus 7 ~~~~laF~Rg~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g 49 (81)
T smart00632 7 GDNQIAFERGSKGFVAINRSDSDLTITLQTSLPAGTYCDVISG 49 (81)
T ss_pred CCeEEEEECCCeEEEEEECCCCceEEEEeecCCCcceEEEecC
Confidence 34599999999999999996421 123678888883
No 85
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=92.61 E-value=0.31 Score=47.79 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=78.6
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.+.+.++.+++.|| ++|||-+-+.. +|.. +..|+ +|- +.++|++++|++|++|++=+.+ |+..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 56778888999998886 67887543332 2221 33443 554 4589999999999999986544 3332
Q ss_pred CCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCC-CCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014892 121 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 199 (416)
Q Consensus 121 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~ 199 (416)
+. .|..|... -....+....++. +..+..+. ...-+|+.||++++...+.++..+ +.|||||=+|...
T Consensus 91 ~~-----~~~~~~e~---~~~g~~v~~~~g~--~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 159 (339)
T cd06604 91 DP-----GYDVYEEG---LENDYFVKDPDGE--LYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLGVDGIWNDMNE 159 (339)
T ss_pred CC-----CChHHHHH---HHCCeEEECCCCC--EEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCCCceEeecCCC
Confidence 11 11111100 0000000001111 00011111 122368999999999999999887 8999999999764
No 86
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=92.51 E-value=0.32 Score=48.05 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc---------HHHHHHHHHhcC
Q 014892 168 HTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEGAR 214 (416)
Q Consensus 168 ~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~---------~~~~~~~~~~~~ 214 (416)
..+|+.|+.+++.+.-+++++|.||+-+|-=.... ..|+++++++++
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~ 146 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFK 146 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 35788899999998888899999999999643221 246777777664
No 87
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.41 E-value=1.5 Score=42.33 Aligned_cols=124 Identities=10% Similarity=0.050 Sum_probs=68.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCC-----CCCCCCHHHHHHHHHHHHHCCCEEEEEE-cccc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL-----NSSYGSEHLLKALLHKMKQHKVRAMADI-VINH 117 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~i-----d~~~Gt~~d~~~Lv~~aH~~Gi~VilD~-V~NH 117 (416)
..+-|.+.||.++.+++|.+++-=. +. ..+.+.+..|=.+ ...+=|.+|+++||+-|.++||+||-.+ ++.|
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~Hlt-Dd-~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH 93 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLT-DD-QGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGH 93 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEe-cC-CCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccc
Confidence 4677888889999999998877200 00 0011111111111 0112379999999999999999999777 3556
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHh
Q 014892 118 RVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNT 187 (416)
Q Consensus 118 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~ 187 (416)
+..-.. .|..+.. . ...... .. ..-..-+.||..+|++.+++.+++.-+++-
T Consensus 94 ~~a~~~----~ypel~~-------~-----~~~~~~-~~-~~~~~~~~l~~~~p~t~~f~~~l~~E~~~l 145 (311)
T cd06570 94 ASAIAV----AYPELAS-------G-----PGPYVI-ER-GWGVFEPLLDPTNEETYTFLDNLFGEMAEL 145 (311)
T ss_pred hHHHHH----hCHHhcc-------C-----CCcccc-cc-ccccCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 654110 0100000 0 000000 00 000111358999999999999999888743
No 88
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.37 E-value=0.27 Score=47.12 Aligned_cols=130 Identities=13% Similarity=0.094 Sum_probs=74.3
Q ss_pred CcHHHHHhhhhhHHHcCC--CEEEeCCCCCCC-C----CCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 43 DWWRNLERKVPDISKSGF--TSVWLPPATHSF-A----PEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~-~----~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.+-+.+.+-++.+++-|| ++|||=.=+... . ..+|.. +..|+ +|- +.++||+++|++|+|||+-+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~---ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~ 95 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTG---YSWNRKLFP---DPEKLLQDLHDRGLKVTLNLH 95 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcce---eEEChhcCC---CHHHHHHHHHHCCCEEEEEeC
Confidence 367788888888887665 677763211110 0 012221 34443 554 568999999999999999886
Q ss_pred cccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Q 014892 115 INHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFR 194 (416)
Q Consensus 115 ~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfR 194 (416)
+.. +.+.. ...|..+... .... .. . ....-+|+.||+.++...+.++.-+.+.|||||=
T Consensus 96 P~~-~~~~~--~~~y~~~~~~-~~~~--------~~-----~----~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W 154 (292)
T cd06595 96 PAD-GIRAH--EDQYPEMAKA-LGVD--------PA-----T----EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWW 154 (292)
T ss_pred CCc-ccCCC--cHHHHHHHHh-cCCC--------cc-----c----CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 642 21110 0112111100 0000 00 0 0112468999999987766665444599999999
Q ss_pred ecccC
Q 014892 195 FDFAR 199 (416)
Q Consensus 195 lD~a~ 199 (416)
.|...
T Consensus 155 ~D~~E 159 (292)
T cd06595 155 LDWQQ 159 (292)
T ss_pred ecCCC
Confidence 99643
No 89
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=92.24 E-value=1 Score=42.47 Aligned_cols=94 Identities=11% Similarity=0.187 Sum_probs=64.7
Q ss_pred CcHHHHHhhhhhHHHcC--CCEEEeCCCCCCCCCCCcccccC-CCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 43 DWWRNLERKVPDISKSG--FTSVWLPPATHSFAPEGYLPQNL-YSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LG--v~~I~L~Pi~~~~~~~GY~~~d~-~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
.+-+.+.+.++.+++.| +++|+|-+-+... | .++ +..|+ +|.+ .++||+.+|++|++|++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~--~~f~~~~d~~~Fpd---p~~~i~~l~~~g~~~~~~~~---- 87 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----Y--GDFTFDWDAGKFPN---PKSMIDELHDNGVKLVLWID---- 87 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECcccccC----C--ceeeeecChhhCCC---HHHHHHHHHHCCCEEEEEeC----
Confidence 47788889999888855 5688886544332 1 111 24442 5544 67899999999999999442
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 119 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
|.|++...+.++..+.+.|||||=+|..
T Consensus 88 ----------------------------------------------------P~v~~w~~~~~~~~~~~~Gvdg~w~D~~ 115 (265)
T cd06589 88 ----------------------------------------------------PYIREWWAEVVKKLLVSLGVDGFWTDMG 115 (265)
T ss_pred ----------------------------------------------------hhHHHHHHHHHHHhhccCCCCEEeccCC
Confidence 2236666666666545899999999976
Q ss_pred CCC
Q 014892 199 RGY 201 (416)
Q Consensus 199 ~~~ 201 (416)
...
T Consensus 116 E~~ 118 (265)
T cd06589 116 EPS 118 (265)
T ss_pred CCC
Confidence 543
No 90
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.07 E-value=1.1 Score=41.87 Aligned_cols=81 Identities=9% Similarity=0.152 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCH
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 171 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 171 (416)
..++..++++||++|+||++=+- ++... . +. --..+|
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~-----------------~---------------------~~----~~~~~~ 81 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP-----------------E---------------------FT----AALNDP 81 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC-----------------c---------------------ch----hhhcCH
Confidence 46789999999999999998431 11000 0 00 023468
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCCc-----HHHHHHHHHhcCC
Q 014892 172 FVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-----AKYVKEYIEGARP 215 (416)
Q Consensus 172 ~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~-----~~~~~~~~~~~~~ 215 (416)
+.|+.+++.+..+++++|.||+-+|--.... ..|++++++++++
T Consensus 82 ~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~ 130 (253)
T cd06545 82 AKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKK 130 (253)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhh
Confidence 8899999999888899999999999643221 3577778777653
No 91
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=92.04 E-value=1.7 Score=42.46 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=70.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCC------------CCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL------------NSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~i------------d~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
..+-|.+.+|.++..++|.++|--.=.. .+......|=.+ ...+=|.+|+++||+-|.++||.||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~--~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQ--GWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCC--cceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 4677888888999999999998432100 111111111111 01122799999999999999999997
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhc
Q 014892 112 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 188 (416)
Q Consensus 112 D~-V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~ 188 (416)
.+ ++-|+..-.. .|..+.. .. .......+.-.....||..+|++.+++.+++...++-+
T Consensus 94 EiD~PGH~~a~~~----~~p~l~~-----~~---------~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f 153 (329)
T cd06568 94 EIDMPGHTNAALA----AYPELNC-----DG---------KAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALT 153 (329)
T ss_pred ecCCcHHHHHHHH----hChhhcc-----CC---------CCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhC
Confidence 76 2345443100 0100000 00 00000000001124589999999999999999887544
No 92
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=91.95 E-value=0.55 Score=45.82 Aligned_cols=109 Identities=12% Similarity=0.101 Sum_probs=71.4
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLN-SSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id-~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.+.+-++.+++.+| ++|||=.=+. .+|. .+..| .+|-.+ ++||+++|++|++||+-+.+- +..
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPdp---~~mv~~L~~~G~klv~~i~P~-i~~ 90 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPNP---KEMFDNLHNKGLKCSTNITPV-ISY 90 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCCH---HHHHHHHHHCCCeEEEEecCc-eec
Confidence 56777777887777665 6777754322 1231 24445 366554 789999999999999876432 110
Q ss_pred CCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014892 121 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFAR 199 (416)
Q Consensus 121 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~ 199 (416)
. ..|.. -... +|+.||++|+.-.+..+.+. +.|||||=+|+..
T Consensus 91 g---------------~~~~~------------------~~~~--pDftnp~ar~wW~~~~~~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 91 G---------------GGLGS------------------PGLY--PDLGRPDVREWWGNQYKYLF-DIGLEFVWQDMTT 133 (332)
T ss_pred C---------------ccCCC------------------Ccee--eCCCCHHHHHHHHHHHHHHH-hCCCceeecCCCC
Confidence 0 00100 0112 46789999999888888776 7899999999754
No 93
>PLN02950 4-alpha-glucanotransferase
Probab=91.86 E-value=0.5 Score=52.15 Aligned_cols=72 Identities=21% Similarity=0.201 Sum_probs=59.9
Q ss_pred ccCceeEEEeeecCCCC---CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC------CCCcccccCCCCCCCCCCHHHH
Q 014892 25 RNGREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHLL 95 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~---~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~------~~GY~~~d~~~id~~~Gt~~d~ 95 (416)
+.+.|+++|+|-=.+.. =|||..+.+-+|.+++.|.+.|+|+|+.+... +..|.+.+-++++|-|=+.+++
T Consensus 259 ~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falNPlyI~l~~l 338 (909)
T PLN02950 259 WRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALHPLYLRVQAL 338 (909)
T ss_pred ccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccChhhcCHHHH
Confidence 45679999999865443 28999999999999999999999999998652 2379999999999999887666
Q ss_pred H
Q 014892 96 K 96 (416)
Q Consensus 96 ~ 96 (416)
-
T Consensus 339 ~ 339 (909)
T PLN02950 339 S 339 (909)
T ss_pred H
Confidence 3
No 94
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.78 E-value=0.36 Score=52.34 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCC-CCCCcCCCCCHH
Q 014892 94 LLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNF-HGVPNIDHTQHF 172 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~ 172 (416)
+.++||+.+|++|||+|+=+.+. ...+++.+. ... ....++..+++. ....+.+ ....-+||.||+
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~-----e~~-----~~Gy~~k~~~g~--~~~~~~w~~~~a~~DFtnp~ 388 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPY-IKQDSPLFK-----EAI-----EKGYFVKDPDGE--IYQADFWPGNSAFPDFTNPD 388 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccc-cccCCchHH-----HHH-----HCCeEEECCCCC--EeeecccCCcccccCCCCHH
Confidence 35699999999999999966554 333332110 000 000112222211 1112222 244558999999
Q ss_pred HHHHHHH-HHHHHHHhcCCCeEEecccCCCc
Q 014892 173 VRKDIIA-WLRWLRNTVGFQDFRFDFARGYS 202 (416)
Q Consensus 173 v~~~l~~-~~~~w~~~~gvDGfRlD~a~~~~ 202 (416)
+|+...+ ..+.++ ++|||||=.|.....+
T Consensus 389 ~r~Ww~~~~~~~l~-d~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 389 AREWWASDKKKNLL-DLGVDGFWNDMNEPEP 418 (772)
T ss_pred HHHHHHHHHHhHHH-hcCccEEEccCCCCcc
Confidence 9999995 556676 9999999999865443
No 95
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=91.76 E-value=1.8 Score=46.47 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=76.5
Q ss_pred CCcHHHHHhhhhhHHHcCCC--EEEeCCCCCCCCCCCcc--cccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 42 HDWWRNLERKVPDISKSGFT--SVWLPPATHSFAPEGYL--PQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 42 ~G~~~gi~~~LdyLk~LGv~--~I~L~Pi~~~~~~~GY~--~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+.+..+.+..+..+++||. .+|. +-=|. -.||.-=+..|++ ++.+++.+|++|+|+|+=+=++=
T Consensus 307 Y~nls~~~dvv~~~~~agiPld~~~~--------DiDyMd~ykDFTvd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 307 YKNLSVVRDVVENYRAAGIPLDVIVI--------DIDYMDGYKDFTVDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred cccHHHHHHHHHHHHHcCCCcceeee--------ehhhhhcccceeeccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 35788888888888888884 4442 11122 3443222345665 99999999999999986443221
Q ss_pred CcCCCCCCCCcccccCCCCCCCCCC-ceecCCCCCCCCCCCCCC-CCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014892 118 RVGTTQGHGGKYNRYDGIPLSWDEH-AVTSCTGGLGNGSTGDNF-HGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 195 (416)
Q Consensus 118 ~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRl 195 (416)
... ..|..|+.. .... .+.. ..+... ..+..+ ....=+|+.||++.....+.++.+-++.++|||=+
T Consensus 376 s~~------~~y~~y~~g---~~~~v~I~~-~~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wi 444 (805)
T KOG1065|consen 376 STN------SSYGPYDRG---VAKDVLIKN-REGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWI 444 (805)
T ss_pred ccC------ccchhhhhh---hhhceeeec-ccCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEE
Confidence 111 112222110 0000 0000 011100 111111 12333678999999999998888878999999999
Q ss_pred ccc
Q 014892 196 DFA 198 (416)
Q Consensus 196 D~a 198 (416)
|+-
T Consensus 445 Dmn 447 (805)
T KOG1065|consen 445 DMN 447 (805)
T ss_pred ECC
Confidence 984
No 96
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=91.39 E-value=1.6 Score=46.88 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=36.6
Q ss_pred ceeEEEeeecCCCCC---CcHHHHHhhhhhHHHcCCCEEEeCCCCC
Q 014892 28 REILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATH 70 (416)
Q Consensus 28 ~~~~~q~f~~~~~~~---G~~~gi~~~LdyLk~LGv~~I~L~Pi~~ 70 (416)
=|+++|+|-=.+..+ |||..+.+-++.+++.|.+.+.|+|+..
T Consensus 144 wGv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 144 WGACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred eEEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 478999997554332 8999999999999999999999999994
No 97
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=91.17 E-value=0.49 Score=36.84 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=30.9
Q ss_pred EecCCEEEEEEC----CEEEEEEcCCCC---------CCCCCCcEEeeeCCceEE
Q 014892 372 EAQSNLYSAIIG----DKVCMKIGDGSW---------CPAGKEWTLATSGHKYAV 413 (416)
Q Consensus 372 ~~~~~~~~~~R~----~~~lvvinn~~~---------~~~~~~~~~~ls~~~~~~ 413 (416)
..+++++||.|. +.++||+|++.. .|.++.|++++++....+
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~ 60 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEY 60 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEEE
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccEE
Confidence 446789999992 258999998664 244678999998866544
No 98
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=90.33 E-value=0.84 Score=50.45 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.+.+-++.+++.|| ++|||--=+ -.||.. |..|+ +|- +.++||+++|++|+|+|.=+-+ ++..
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwlDidY----m~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~ 267 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWMDIDY----MDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKA 267 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEehhh----hcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCcc
Confidence 34445555555555443 445543111 013332 34443 554 4589999999999999864422 2221
Q ss_pred CCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCC-CCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 121 TTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHG-VPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 121 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
++.|..+... -....+....++. +..+..|++ ..=+||.||++|+...+.++.++ +.|||||=+|+-
T Consensus 268 -----d~gY~~y~eg---~~~~~fvk~~~G~--~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~-d~GVDG~W~Dmn 335 (978)
T PLN02763 268 -----EEGYFVYDSG---CENDVWIQTADGK--PFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFV-SNGVDGIWNDMN 335 (978)
T ss_pred -----CCCCHHHHhH---hhcCeeEECCCCC--eeEeeecCCCccccCCCCHHHHHHHHHHHHHHh-cCCCcEEEccCC
Confidence 1123222210 0000011111111 111112221 12258999999999999999887 799999999974
No 99
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=90.31 E-value=0.44 Score=35.90 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=24.0
Q ss_pred EEecCCEEEEEE---CCEEEEEEcCCCCC------------CCCCCcEEeeeCCceEE
Q 014892 371 LEAQSNLYSAII---GDKVCMKIGDGSWC------------PAGKEWTLATSGHKYAV 413 (416)
Q Consensus 371 ~~~~~~~~~~~R---~~~~lvvinn~~~~------------~~~~~~~~~ls~~~~~~ 413 (416)
....+++|+|.| ++.++|++|+++.. +.....++++||+.+.+
T Consensus 5 f~P~~gvYvYfR~~~~~tVmVilN~n~~~~~ldl~ry~E~l~~~~~~~diltg~~i~l 62 (78)
T PF10438_consen 5 FAPQDGVYVYFRYYDGKTVMVILNKNDKEQTLDLKRYAEVLGGFTSAKDILTGKTIDL 62 (78)
T ss_dssp ---BTTEEEEEEEESSEEEEEEEE-SSS-EEEEGGGGHHHHTT--EEEETTT--EEE-
T ss_pred ECccCCEEEEEEEcCCCEEEEEEcCCCCCeEEcHHHHHHhhCCCcceEECCCCCEEec
Confidence 345788999999 45677777775533 12346788888887763
No 100
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=89.91 E-value=0.6 Score=45.75 Aligned_cols=136 Identities=10% Similarity=0.086 Sum_probs=78.3
Q ss_pred CcHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 43 DWWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.+-+.+.+.++.+++.|| ++|||=.=+. .+|. .+..|+ +|- +.+.||+++|++|+||++-+.+- +.
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~----~~~~---~f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~ 89 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHT----DGKR---YFTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IK 89 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHh----CCCC---ceEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-ee
Confidence 467788888888888775 6777753221 1222 144554 554 55889999999999999987643 22
Q ss_pred CCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCC-CCCcCCCCCHHHHHHHHHHHHHHHH--hcCCCeEEec
Q 014892 120 GTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFH-GVPNIDHTQHFVRKDIIAWLRWLRN--TVGFQDFRFD 196 (416)
Q Consensus 120 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~~~~v~~~l~~~~~~w~~--~~gvDGfRlD 196 (416)
.+. .+..|... ..........++ .+..+..+. ...-+|+.||++++...+.++.... ..|+|||=+|
T Consensus 90 ~~~-----~~~~y~e~---~~~g~~vk~~~g--~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D 159 (339)
T cd06603 90 RDD-----GYYVYKEA---KDKGYLVKNSDG--GDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWND 159 (339)
T ss_pred cCC-----CCHHHHHH---HHCCeEEECCCC--CEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEec
Confidence 211 01111100 000000000111 001111111 1234889999999999999998874 3689999888
Q ss_pred ccC
Q 014892 197 FAR 199 (416)
Q Consensus 197 ~a~ 199 (416)
+..
T Consensus 160 ~~E 162 (339)
T cd06603 160 MNE 162 (339)
T ss_pred cCC
Confidence 653
No 101
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.63 E-value=2.3 Score=41.41 Aligned_cols=122 Identities=16% Similarity=0.120 Sum_probs=70.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEe--CC-----C--CCCCCCCC-cc------cccCCCC--CCCCCCHHHHHHHHHHHHHC
Q 014892 44 WWRNLERKVPDISKSGFTSVWL--PP-----A--THSFAPEG-YL------PQNLYSL--NSSYGSEHLLKALLHKMKQH 105 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L--~P-----i--~~~~~~~G-Y~------~~d~~~i--d~~~Gt~~d~~~Lv~~aH~~ 105 (416)
..+-|.+.|+.++.+++|.++| += + ++.....| |. +..+... ...+=|.+|+++||+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 3677888889999999999998 11 1 11100000 10 0001111 12222799999999999999
Q ss_pred CCEEEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 014892 106 KVRAMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 184 (416)
Q Consensus 106 Gi~VilD~-V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w 184 (416)
||.||-.+ +|-|+..-.. .| + ... +... ........||..+|++.+++.+++...
T Consensus 95 gI~vIPEID~PGH~~a~~~----~~-p------el~----~~~~---------~~~~~~~~l~~~~~~t~~f~~~l~~E~ 150 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTK----AM-P------ELG----LKNP---------FSKYDKDTLDISNPEAVKFVKALFDEY 150 (326)
T ss_pred CCeEeccCCCcHHHHHHHH----hh-H------Hhc----CCCc---------ccCCCcccccCCCHHHHHHHHHHHHHH
Confidence 99999766 3445543100 00 0 000 0000 001122347889999999999999988
Q ss_pred HHhcC
Q 014892 185 RNTVG 189 (416)
Q Consensus 185 ~~~~g 189 (416)
++-+.
T Consensus 151 ~~~f~ 155 (326)
T cd06564 151 LDGFN 155 (326)
T ss_pred HHhcC
Confidence 86665
No 102
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=89.58 E-value=0.79 Score=49.19 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=59.1
Q ss_pred ccCceeEEEeeecCCCCC---CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC-----C-CCcccccCCCCCCCCCCHHHH
Q 014892 25 RNGREILFQGFNWESCKH---DWWRNLERKVPDISKSGFTSVWLPPATHSFA-----P-EGYLPQNLYSLNSSYGSEHLL 95 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~~---G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~-----~-~GY~~~d~~~id~~~Gt~~d~ 95 (416)
+.+.|+++|+|-=.+..+ |||..+.+-+|.+++.|.+.|+|+|+.+... . ..|.+.+-++.+|-|=+.+.+
T Consensus 59 ~R~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L 138 (745)
T PLN03236 59 WKGSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKEL 138 (745)
T ss_pred hhhheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHh
Confidence 445799999998655433 8999999999999999999999999998752 2 489999999999888776655
Q ss_pred H
Q 014892 96 K 96 (416)
Q Consensus 96 ~ 96 (416)
.
T Consensus 139 ~ 139 (745)
T PLN03236 139 V 139 (745)
T ss_pred h
Confidence 3
No 103
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.55 E-value=0.96 Score=46.03 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=50.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeC-------CC----C----CCCCCCCcccccCCCCCCCCC-------------CHHHH
Q 014892 44 WWRNLERKVPDISKSGFTSVWLP-------PA----T----HSFAPEGYLPQNLYSLNSSYG-------------SEHLL 95 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~-------Pi----~----~~~~~~GY~~~d~~~id~~~G-------------t~~d~ 95 (416)
..+-|.+.+|.++..++|.++|- |+ + +..++.++...+...+-|.+| |.+|+
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di 99 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADY 99 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccCHHHH
Confidence 47778888888888889988873 11 1 111233443333222322222 78999
Q ss_pred HHHHHHHHHCCCEEEEEE-ccccCcC
Q 014892 96 KALLHKMKQHKVRAMADI-VINHRVG 120 (416)
Q Consensus 96 ~~Lv~~aH~~Gi~VilD~-V~NH~~~ 120 (416)
++||+-|++|||.||-.+ ++.|+..
T Consensus 100 ~eiv~yA~~rgI~VIPEID~PGH~~a 125 (445)
T cd06569 100 IEILKYAKARHIEVIPEIDMPGHARA 125 (445)
T ss_pred HHHHHHHHHcCCEEEEccCCchhHHH
Confidence 999999999999999776 4566654
No 104
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.42 E-value=0.68 Score=46.02 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=67.8
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEEccccCcCCCC
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG--SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQ 123 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~G--t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~ 123 (416)
+-+.+.+.-+|++|||+|-|..+. +-.++|.=| .-+.|.++|+.|+++||+|||-+.. +.. |
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~------------W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~---P 73 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFS------------WSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAP---P 73 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCE------------HHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS----
T ss_pred HHHHHHHHHHHHcCCCEEEEEEec------------hhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecc-ccc---c
Confidence 456788899999999999987753 112222222 2345999999999999999997651 111 1
Q ss_pred CCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEeccc
Q 014892 124 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG----FQDFRFDFA 198 (416)
Q Consensus 124 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~g----vDGfRlD~a 198 (416)
.|+... ++.......++.. .....-...++.+|.+|+++.+.++..++.++ |-|+-+|.=
T Consensus 74 ------~Wl~~~----~Pe~~~~~~~g~~-----~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE 137 (374)
T PF02449_consen 74 ------AWLYDK----YPEILPVDADGRR-----RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE 137 (374)
T ss_dssp ------HHHHCC----SGCCC-B-TTTSB-----EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS
T ss_pred ------cchhhh----cccccccCCCCCc-----CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc
Confidence 111100 0000000001110 01122234577899999998888877665554 668888864
No 105
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=89.26 E-value=0.95 Score=48.54 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=37.6
Q ss_pred CcHHHHHhhhhhHH--HcCCCEEE-eCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHH
Q 014892 43 DWWRNLERKVPDIS--KSGFTSVW-LPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALL 99 (416)
Q Consensus 43 G~~~gi~~~LdyLk--~LGv~~I~-L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv 99 (416)
|++..+++.+.... -+|++=|. +.|.-+. ....|.+.+-+.+||-|=+.+++.++.
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alNPlyI~~e~l~e~~ 223 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLNVIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccChHHcCHHHHhhhh
Confidence 46777777776322 34466666 4454333 467899999999998888877666553
No 106
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=89.11 E-value=2 Score=41.55 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCC
Q 014892 90 GSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHT 169 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 169 (416)
.+.+++++-|+.||++|+|||+=+ +. |... ....
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG------------------~~~~-----------------------~~~~ 90 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GG------------------ANGH-----------------------VDLN 90 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eC------------------CCCc-----------------------cccC
Confidence 356889999999999999999864 11 0000 0124
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 170 QHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 170 ~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
+++-|+.+++.+..+++++|+||+=+|-=
T Consensus 91 ~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 91 HTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 56778889999998999999999999964
No 107
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=89.03 E-value=5 Score=41.33 Aligned_cols=46 Identities=11% Similarity=-0.041 Sum_probs=34.0
Q ss_pred cCceeEEEeeecCCCCC---CcHHHHHhhhhhHH-HcCCCEEEeCCCCCC
Q 014892 26 NGREILFQGFNWESCKH---DWWRNLERKVPDIS-KSGFTSVWLPPATHS 71 (416)
Q Consensus 26 ~~~~~~~q~f~~~~~~~---G~~~gi~~~LdyLk-~LGv~~I~L~Pi~~~ 71 (416)
+..++-+|.+.-.+++. |||..+.-++.-.. .-|.+.+.|+|++..
T Consensus 12 ~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 12 MKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred ccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 34456666666555544 89988888876655 999999999998854
No 108
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=86.91 E-value=3.7 Score=39.70 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014892 160 FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 200 (416)
Q Consensus 160 ~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~ 200 (416)
|++-..+++.+|+.++.|.+-+...+ +.|+|||=+|.+..
T Consensus 132 W~g~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDs 171 (315)
T TIGR01370 132 WPGNYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDA 171 (315)
T ss_pred CCCceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchh
Confidence 44445688999999999999888776 99999999998754
No 109
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=86.16 E-value=9.7 Score=35.68 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc----HHHHHHHHHhcCC
Q 014892 170 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----AKYVKEYIEGARP 215 (416)
Q Consensus 170 ~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~----~~~~~~~~~~~~~ 215 (416)
+++-|+.+++.+.-+++++|+||+=+|--.... ..++++++++..+
T Consensus 93 ~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~~~ 142 (256)
T cd06546 93 DDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDFGP 142 (256)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHhCC
Confidence 456677777777778889999999999754333 3456666666543
No 110
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=85.68 E-value=1.4 Score=50.43 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=55.0
Q ss_pred CceeEEEeeecCCCC---CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC-C----CCCcccccCCCCCCCCCCHHH
Q 014892 27 GREILFQGFNWESCK---HDWWRNLERKVPDISKSGFTSVWLPPATHSF-A----PEGYLPQNLYSLNSSYGSEHL 94 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~---~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-~----~~GY~~~d~~~id~~~Gt~~d 94 (416)
.-|+++|+|-=.+.+ =|||..+.+-++.+++.|.+.|.|+|+.+.. . +..|.+.+-+..+|-|=+.+.
T Consensus 724 ~~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~~~SPYsp~S~~alNplyI~~~~ 799 (1221)
T PRK14510 724 ACGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPERASPYQPSSRRAGNPLLISLDL 799 (1221)
T ss_pred ceEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCccchhccccChhhcCHhh
Confidence 568899999755422 2899999999999999999999999999754 2 378999988888877766543
No 111
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.54 E-value=7.3 Score=38.45 Aligned_cols=126 Identities=6% Similarity=-0.066 Sum_probs=68.8
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCC-----------CCCC----CCCCCcccc----cCCCCCC--CCCCHHHHHHHHHHHH
Q 014892 45 WRNLERKVPDISKSGFTSVWLPP-----------ATHS----FAPEGYLPQ----NLYSLNS--SYGSEHLLKALLHKMK 103 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~P-----------i~~~----~~~~GY~~~----d~~~id~--~~Gt~~d~~~Lv~~aH 103 (416)
.+-|.+.+|.++.+++|.++|-- -++. .++.+.... ......+ .+=|.+|+++||+-|.
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~ 96 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIVAYAA 96 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHHHHHH
Confidence 56777788888889999999831 1111 111111111 1111111 1226899999999999
Q ss_pred HCCCEEEEEE-ccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHH
Q 014892 104 QHKVRAMADI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLR 182 (416)
Q Consensus 104 ~~Gi~VilD~-V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~ 182 (416)
++||+||-.+ ++.|+..-.. .|..+. ..+ .... +.. ........||..+|++.+++.+++.
T Consensus 97 ~rgI~VIPEID~PGH~~a~l~----~~pel~-------~~~----~~~~--~~~-~~~~~~~~L~~~~~~t~~f~~~ll~ 158 (357)
T cd06563 97 ERGITVIPEIDMPGHALAALA----AYPELG-------CTG----GPGS--VVS-VQGVVSNVLCPGKPETYTFLEDVLD 158 (357)
T ss_pred HcCCEEEEecCCchhHHHHHH----hCcccc-------CCC----CCCc--ccc-ccCcCCCccCCCChhHHHHHHHHHH
Confidence 9999999776 3445543100 000000 000 0000 000 0011122488899999999999998
Q ss_pred HHHHhc
Q 014892 183 WLRNTV 188 (416)
Q Consensus 183 ~w~~~~ 188 (416)
..++-+
T Consensus 159 E~~~lF 164 (357)
T cd06563 159 EVAELF 164 (357)
T ss_pred HHHHhC
Confidence 887433
No 112
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=84.92 E-value=16 Score=34.66 Aligned_cols=124 Identities=16% Similarity=0.104 Sum_probs=73.3
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHH-HHH-HCCCEEEEEEccccCcCCCC
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLH-KMK-QHKVRAMADIVINHRVGTTQ 123 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~-~aH-~~Gi~VilD~V~NH~~~~~~ 123 (416)
+.+-.-++.|++||+|+|+|-++....++.-.+.. |=.+.++--.+|+-.=|. +++ +.|++|..=+-. .+-+-|
T Consensus 17 ~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~--YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp 92 (294)
T PF14883_consen 17 RNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAV--YFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLP 92 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeE--EcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCC
Confidence 34556678899999999999988766543333332 334555555666544433 554 889999864433 111111
Q ss_pred CCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014892 124 GHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 195 (416)
Q Consensus 124 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRl 195 (416)
.. ..+.... .. ...-....-|.--+|++|+.|.++-.-+.....+||+=|
T Consensus 93 ~~-----------~~~~~~~---~~--------~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 93 KV-----------KRADEVR---TD--------RPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred Cc-----------chhhhcc---cc--------CCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 00 0000000 00 001122334666789999999999999985569999877
No 113
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=84.85 E-value=1.3 Score=42.35 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=34.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
|-+.-..-+++||+||+|+|-+ |+|||..-- .+.++++.+.||.||+|+-..+.+-
T Consensus 51 d~~~C~rDi~~l~~LgiNtIRV-----------------Y~vdp~~nH----d~CM~~~~~aGIYvi~Dl~~p~~sI 106 (314)
T PF03198_consen 51 DPEACKRDIPLLKELGINTIRV-----------------YSVDPSKNH----DECMSAFADAGIYVILDLNTPNGSI 106 (314)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEE-----------------S---TTS------HHHHHHHHHTT-EEEEES-BTTBS-
T ss_pred CHHHHHHhHHHHHHcCCCEEEE-----------------EEeCCCCCH----HHHHHHHHhCCCEEEEecCCCCccc
Confidence 4455666689999999999984 778876543 3444567778999999997775555
No 114
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=84.82 E-value=1.7 Score=35.34 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=32.4
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
=+-+.+-++.+.++|+.++|+.|= +.-+++++.|+++||+|+-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc------------------------hHHHHHHHHHHHcCCEEEe
Confidence 456788899999999999999984 5567888999999999984
No 115
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=84.77 E-value=6.3 Score=38.00 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc------HHHHHHHHHhcC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGAR 214 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~------~~~~~~~~~~~~ 214 (416)
.+|+.|+.+++.+..+++++|.||+-+|--..-+ ..|+++++.+++
T Consensus 83 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 83 SNPEARQRLINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLH 134 (313)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhh
Confidence 4688899999999888889999999999754322 247777777765
No 116
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=84.48 E-value=3.4 Score=39.76 Aligned_cols=112 Identities=6% Similarity=-0.060 Sum_probs=68.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCC--CCCCCCCCCcccccCCCCC--CCCCCHHHHHHHHHHHHHCCCEEEEEE-ccccC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPP--ATHSFAPEGYLPQNLYSLN--SSYGSEHLLKALLHKMKQHKVRAMADI-VINHR 118 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~P--i~~~~~~~GY~~~d~~~id--~~~Gt~~d~~~Lv~~aH~~Gi~VilD~-V~NH~ 118 (416)
..+-|.+.++.++.+|+|.++|-= -|+..+ + -.+. ...=|.+|+++|++-|.++||.||-.+ +|-|+
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~---~-----p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEG---E-----PEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCC---C-----cccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHH
Confidence 467788889999999999999821 111111 1 1111 122279999999999999999999644 24455
Q ss_pred cCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcC
Q 014892 119 VGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 189 (416)
Q Consensus 119 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~g 189 (416)
..--.+ ..|... +... ..-..||..+|++.+.+.+.+...++-+.
T Consensus 87 ~~~l~~--~~~~~l------------~~~~------------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 87 EFILKH--PEFRHL------------REVD------------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHHhC--cccccc------------cccC------------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 431100 001000 0000 00123788899999999999988885444
No 117
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=84.26 E-value=3.1 Score=38.35 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=36.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+-+.+.|+|||++|+++- |. ..+ +.++..+||+.++++|++|+-.+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~--------G~-----~~i-----~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 75 EYLNECDELGFEAVEISD--------GS-----MEI-----SLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHHcCCCEEEEcC--------Cc-----cCC-----CHHHHHHHHHHHHhCCCeEeccc
Confidence 345599999999999874 21 122 37899999999999999999654
No 118
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=84.09 E-value=0.84 Score=44.33 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=33.2
Q ss_pred hhhhhHHHcCCCEEEeCCCCC-CCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 50 RKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~-~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.|..+|++|+|+|..-=.+. +...- ...|| ....|+.+|++.|+++||.|||-.
T Consensus 28 ~~l~k~ka~G~n~v~~yv~W~~he~~~--g~~df-------~g~~dl~~f~~~a~~~gl~vilrp 83 (319)
T PF01301_consen 28 DRLQKMKAAGLNTVSTYVPWNLHEPEE--GQFDF-------TGNRDLDRFLDLAQENGLYVILRP 83 (319)
T ss_dssp HHHHHHHHTT-SEEEEE--HHHHSSBT--TB----------SGGG-HHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHhCCcceEEEeccccccCCCC--Ccccc-------cchhhHHHHHHHHHHcCcEEEecc
Confidence 567778999999998742221 11001 12222 234789999999999999999964
No 119
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=83.95 E-value=13 Score=35.15 Aligned_cols=61 Identities=11% Similarity=-0.055 Sum_probs=39.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCc-ccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY-~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+....-+|+-+++|+..|.+-==+. .++. ...|+....+ ..++++||+-|+++|++|+|
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~---~~~~~~~~d~~~~~~----~~dl~elv~Ya~~KgVgi~l 91 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWY---GWEKDDDFDFTKPIP----DFDLPELVDYAKEKGVGIWL 91 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCC---GS--TTT--TT-B-T----T--HHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccc---cccccccccccccCC----ccCHHHHHHHHHHcCCCEEE
Confidence 899999999999999999999911111 0111 2344445544 37899999999999999998
No 120
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=83.76 E-value=2.4 Score=36.92 Aligned_cols=49 Identities=8% Similarity=0.198 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCcccCCCC-------eEEEEec----CCEEEEEE-C------------CEEEEEEcCCC
Q 014892 346 IHNQIVKLMDVRRQQDIHSRSS-------IKILEAQ----SNLYSAII-G------------DKVCMKIGDGS 394 (416)
Q Consensus 346 l~~~~~~Li~lR~~~~~l~~G~-------~~~~~~~----~~~~~~~R-~------------~~~lvvinn~~ 394 (416)
..++++.|++||+++|.++-++ ..+.... .++++.+. + +.++||+|-+.
T Consensus 43 a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~ 115 (168)
T PF11852_consen 43 ASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATP 115 (168)
T ss_dssp HHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SS
T ss_pred HHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCC
Confidence 5899999999999999999774 4444443 46888876 2 24777777754
No 121
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=82.32 E-value=16 Score=36.46 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=68.5
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCC-CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGG 127 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~ 127 (416)
.+-++-+|+.|...|-|+-=+... .-+.=..++|..++... ..+=+++|+++|+++||++-+ -|..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~p-krDiv~el~~A~rk~Glk~G~----Y~S~-------- 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGP-KRDLVGELADAVRKRGLKFGL----YHSL-------- 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCC-CcchHHHHHHHHHHcCCeEEE----EcCH--------
Confidence 444778899999988877543221 11111233555555444 457799999999999999998 1221
Q ss_pred cccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHH---HHHHHHHHHhcCCCeEEecccCC
Q 014892 128 KYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDI---IAWLRWLRNTVGFQDFRFDFARG 200 (416)
Q Consensus 128 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l---~~~~~~w~~~~gvDGfRlD~a~~ 200 (416)
.+|+... |.+.. .........+...+++ ..-++-++..||-|.+=+|.+..
T Consensus 151 ---------~DW~~p~---y~~~~----------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~ 204 (384)
T smart00812 151 ---------FDWFNPL---YAGPT----------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWE 204 (384)
T ss_pred ---------HHhCCCc---ccccc----------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 1222110 00000 0000011234456666 66677888899999999998743
No 122
>TIGR03356 BGL beta-galactosidase.
Probab=81.97 E-value=8.4 Score=39.04 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=44.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.+.-..+-++-||+||++++=++=-+..--..|-. .+ .-...+=+.++|++|.++||++|+++.
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~~--n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----PV--NPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----Cc--CHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 56778899999999999998875433222112210 11 112356689999999999999999984
No 123
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=81.38 E-value=4.2 Score=39.12 Aligned_cols=122 Identities=10% Similarity=0.103 Sum_probs=69.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCC-----------CCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSL-----------NSSYGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~i-----------d~~~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
..+-|.+-+|.++.+++|.++|-=- .. ..+.+....|=.+ ...+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D~-~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-DD-QAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-cC-CCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4677888888899999999977310 00 0011111111111 111226899999999999999999987
Q ss_pred E-ccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhc
Q 014892 113 I-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTV 188 (416)
Q Consensus 113 ~-V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~ 188 (416)
+ +|.|+..-... | +.-.+....+.. ....-..||..+|++.+++.+.+..+++-+
T Consensus 92 iD~PGH~~a~~~~----~-----------p~l~~~~~~~~~------~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf 147 (303)
T cd02742 92 IDMPGHSTAFVKS----F-----------PKLLTECYAGLK------LRDVFDPLDPTLPKGYDFLDDLFGEIAELF 147 (303)
T ss_pred ccchHHHHHHHHh----C-----------HHhccCccccCC------CCCCCCccCCCCccHHHHHHHHHHHHHHhC
Confidence 7 35566541100 0 000000000000 001113488899999999999999888544
No 124
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=80.27 E-value=5.4 Score=37.76 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=35.2
Q ss_pred HhhhhhHHHcCCCEEEe----CCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 49 ERKVPDISKSGFTSVWL----PPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L----~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.|.-||.-|||.|=| -| .++ ...||.-- .+..+...++.+.|.++||||++|+
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP-~ds-ngn~yggG--------nnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDP-YDS-NGNGYGGG--------NNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCC-ccC-CCCccCCC--------cchHHHHHHHHHHHHhcCcEEEeec
Confidence 34577899999998765 33 111 11222211 1234455667788999999999998
No 125
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=80.26 E-value=4.3 Score=37.60 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=36.1
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.+-|+++|+|||++|+++= |.-.. +.++..++|+.+.++|++|+-.+
T Consensus 86 ~~~yl~~~k~lGf~~IEiSd--------Gti~l----------~~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISD--------GTIDL----------PEEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE----------SSS-------------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEecC--------CceeC----------CHHHHHHHHHHHHHCCCEEeecc
Confidence 45668899999999999863 32222 37889999999999999999876
No 126
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=80.17 E-value=3.8 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEccc
Q 014892 93 HLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 93 ~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
++++++.+.|+++||++|.|+-+-
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg 297 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG 297 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 468889999999999999999876
No 127
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=79.80 E-value=1.7 Score=45.03 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=24.0
Q ss_pred hcCCCeEEecccCCCc----------------------HHHHHHHHHhcC-CceEEEcccC
Q 014892 187 TVGFQDFRFDFARGYS----------------------AKYVKEYIEGAR-PIFSVGEYWD 224 (416)
Q Consensus 187 ~~gvDGfRlD~a~~~~----------------------~~~~~~~~~~~~-~~~~vgE~~~ 224 (416)
...+|++|+|.+..+- .++++.+..+.. ...+|||-..
T Consensus 276 ~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r~~~vigEDLG 336 (496)
T PF02446_consen 276 MRLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGRDCLVIGEDLG 336 (496)
T ss_dssp HCC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS-S-EEEE--TS
T ss_pred HHhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCCCCcEEEeecC
Confidence 3678999999875431 457777777766 6788999553
No 128
>PRK15452 putative protease; Provisional
Probab=79.72 E-value=12 Score=38.00 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=33.1
Q ss_pred hhhhHHHcCCCEEEeCCC-CCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 51 KVPDISKSGFTSVWLPPA-THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 51 ~LdyLk~LGv~~I~L~Pi-~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+|...-+.|.++||+..- |..... ..+ | +.+++++.|+.||++|++|.+
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~----~~~-------f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVR----NNE-------F-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhh----ccC-------C-CHHHHHHHHHHHHHcCCEEEE
Confidence 334444779999999542 221110 112 2 468999999999999999987
No 129
>PLN03059 beta-galactosidase; Provisional
Probab=79.54 E-value=3.9 Score=44.43 Aligned_cols=54 Identities=6% Similarity=-0.004 Sum_probs=37.4
Q ss_pred hhhhhHHHcCCCEEEe-CCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 50 RKVPDISKSGFTSVWL-PPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L-~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+.|..+|++|+|+|.. .|..-+...-| .. .|.+..||.++++.|++.||.||+=
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G--~~-------dF~G~~DL~~Fl~la~e~GLyvilR 117 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPG--NY-------YFEDRYDLVKFIKVVQAAGLYVHLR 117 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCC--ee-------eccchHHHHHHHHHHHHcCCEEEec
Confidence 4566689999999986 23222211111 11 2345889999999999999999994
No 130
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=79.34 E-value=9.1 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=24.5
Q ss_pred CEEEEEE--CCEEEEEEcCCCCCC---CCCCcEEeeeC--CceEEee
Q 014892 376 NLYSAII--GDKVCMKIGDGSWCP---AGKEWTLATSG--HKYAVWH 415 (416)
Q Consensus 376 ~~~~~~R--~~~~lvvinn~~~~~---~~~~~~~~ls~--~~~~~~~ 415 (416)
++++-.+ +.+++++|+.+-.+| .+|.|..++.. ..-+|||
T Consensus 5 GLv~t~~Gs~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 5 GLVATTSGSNQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp SEEEEEE-SS-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred ceEEEEeccccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 3555566 678999999876665 46889999987 8899997
No 131
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=79.25 E-value=6.6 Score=35.73 Aligned_cols=66 Identities=9% Similarity=0.052 Sum_probs=41.6
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCccc--ccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLP--QNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~--~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
-+.|.+-.+.|+++|+..|.|+|.++.. -+.|.- .+|---+..-=+.++++++.+.+.++|++|++
T Consensus 144 ~e~i~~ia~~l~~l~~~~~~llpyh~~g-~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 144 RENMQQALDVLIPLGIKQIHLLPFHQYG-EPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCccc-hhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 4555555667778888888888877653 112210 01111111122678999999999999999974
No 132
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=78.28 E-value=44 Score=31.59 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHhhhhhHHHcCCCEEEeC-CCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCC
Q 014892 48 LERKVPDISKSGFTSVWLP-PATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHG 126 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~-Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~ 126 (416)
..+-++...+.|++.|.+. |+.+ .+.++..|+.|+++|++|..-+.+-..+.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~~------ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------------VRNLEVAIKAVKKAGKHVEGAICYTGSPV------ 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------------HHHHHHHHHHHHHCCCeEEEEEEecCCCC------
Confidence 5566677778888887762 2111 57899999999999999886432210000
Q ss_pred CcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHH
Q 014892 127 GKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKY 205 (416)
Q Consensus 127 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~ 205 (416)
+ -.+++.+.++... +.|+|.+++ |.+..+.+.-
T Consensus 146 ------------~---------------------------------~~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~ 179 (275)
T cd07937 146 ------------H---------------------------------TLEYYVKLAKELE-DMGADSICIKDMAGLLTPYA 179 (275)
T ss_pred ------------C---------------------------------CHHHHHHHHHHHH-HcCCCEEEEcCCCCCCCHHH
Confidence 0 0356777777776 899999987 8888888888
Q ss_pred HHHHHHhcC
Q 014892 206 VKEYIEGAR 214 (416)
Q Consensus 206 ~~~~~~~~~ 214 (416)
..++...++
T Consensus 180 v~~lv~~l~ 188 (275)
T cd07937 180 AYELVKALK 188 (275)
T ss_pred HHHHHHHHH
Confidence 887777765
No 133
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=77.61 E-value=10 Score=37.27 Aligned_cols=63 Identities=11% Similarity=-0.003 Sum_probs=37.8
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCC-CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
..+-++-+|++|...|-|+--+... .-+.=..++|..++... ..+=+++|+++|+++|||+.+
T Consensus 93 ~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~-krDiv~El~~A~rk~Glk~G~ 156 (346)
T PF01120_consen 93 ADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGP-KRDIVGELADACRKYGLKFGL 156 (346)
T ss_dssp HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGG-TS-HHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCC-CCCHHHHHHHHHHHcCCeEEE
Confidence 4566778999999999987654332 11111223333333222 357799999999999999999
No 134
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=77.09 E-value=3.5 Score=40.35 Aligned_cols=44 Identities=9% Similarity=0.066 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCC-cH-------HHHHHHHHhcC
Q 014892 171 HFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-SA-------KYVKEYIEGAR 214 (416)
Q Consensus 171 ~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~-~~-------~~~~~~~~~~~ 214 (416)
++.+..+++-|...++.+|+||+=+|.=... +. .|++++.++++
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~ 136 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFLRYLKAKLH 136 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHHHHHHHHHh
Confidence 3445566677777777899999999986655 22 36666666665
No 135
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=77.05 E-value=11 Score=33.68 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc---------HHHHHHHHHhcCC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS---------AKYVKEYIEGARP 215 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~---------~~~~~~~~~~~~~ 215 (416)
.++..|+.+++.+..+++++|.||+=+|--.... ..+++++++++++
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~ 139 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGA 139 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcc
Confidence 4677889999999889999999999999643221 2356666666654
No 136
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.63 E-value=4.6 Score=42.27 Aligned_cols=56 Identities=5% Similarity=0.009 Sum_probs=38.9
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.|...|++|+|+|..-=++.. | ....-.-.|...-||.+||+.||+.|+.|||=+
T Consensus 53 ~~i~k~k~~Gln~IqtYVfWn~---H-----ep~~g~y~FsG~~DlvkFikl~~~~GLyv~LRi 108 (649)
T KOG0496|consen 53 DLIKKAKAGGLNVIQTYVFWNL---H-----EPSPGKYDFSGRYDLVKFIKLIHKAGLYVILRI 108 (649)
T ss_pred HHHHHHHhcCCceeeeeeeccc---c-----cCCCCcccccchhHHHHHHHHHHHCCeEEEecC
Confidence 3455689999999986332221 1 011112246788899999999999999999954
No 137
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=76.31 E-value=21 Score=34.98 Aligned_cols=71 Identities=17% Similarity=0.085 Sum_probs=41.3
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
..++.....++=|+-.|-.-.+.-++...++... -.+.. --..+.||+|++++|++|-++++=+ +|.+...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~--~~i~~-d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQ--PGIWD-DEQIPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTS--EBSSS-HHHHHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccccc--chhch-hhHHHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 4555555566667777766544444322221110 01110 0125789999999999999999865 8888754
No 138
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=75.88 E-value=12 Score=30.05 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=38.9
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
=+++..++..|++-|+++|+|+.-.....++|.-|. .+.++++|++.- |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~-----------~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPH-----------IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCC-----------HHHHHHHHHHHh--CCCEee
Confidence 457888899999999999999997776554442221 566666666543 998874
No 139
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=75.32 E-value=5.9 Score=38.35 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=42.5
Q ss_pred HhhhhhHHHcCCC-EEEeCCCCCCCCCCCcccccC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 49 ERKVPDISKSGFT-SVWLPPATHSFAPEGYLPQNL-YSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 49 ~~~LdyLk~LGv~-~I~L~Pi~~~~~~~GY~~~d~-~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
.++|..|++.|++ .|.|.+=.- +..-. ..++..+ +.+++.+.++.+|+.||+|.+++.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~-------~d~~L~~~inKg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETA-------NDRIREKSINKGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcC-------CHHHHHHhhCCCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 4666677777777 577654111 11112 2456666 78999999999999999999999987
No 140
>PLN02950 4-alpha-glucanotransferase
Probab=75.29 E-value=8.1 Score=42.93 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEccc
Q 014892 93 HLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 93 ~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
++++++.+.|+++||++|.|+-+-
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 468899999999999999999875
No 141
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=75.16 E-value=3.5 Score=40.36 Aligned_cols=134 Identities=11% Similarity=0.146 Sum_probs=70.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCC---------CC--CCCC-cccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATH---------SF--APEG-YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~---------~~--~~~G-Y~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
..+-|.+.|+.++.+++|.++|---=. .+ ...| |.... . + .+=|.+|+++||+-|+++||+||-
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~--~-~-~~yT~~di~~lv~yA~~~gI~VIP 91 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSD--A-G-GYYTKEDIRELVAYAKERGIEVIP 91 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTC--T-E-SEBEHHHHHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCcccccc--c-c-ccCCHHHHHHHHHHHHHcCCceee
Confidence 467788889999999999999832111 00 0111 11111 0 0 033689999999999999999997
Q ss_pred EE-ccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014892 112 DI-VINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGF 190 (416)
Q Consensus 112 D~-V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gv 190 (416)
.+ +|-|++.-.. .+..+... .+... ...+...+....-..||..+|++.+++.+.+...++-+.-
T Consensus 92 eid~PGH~~~~l~----~~p~~~~~--~~~~~--------~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f~~ 157 (351)
T PF00728_consen 92 EIDTPGHAEAWLK----AYPELGCS--AWPED--------KSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLFPS 157 (351)
T ss_dssp EEEESSS-HHHHH----HHHHHCCC--HTTCS--------SSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHHTS
T ss_pred eccCchHHHHHHH----hCchhhcc--ccccc--------cccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhCCC
Confidence 77 4556655110 00000000 00000 0000000000011248899999999999999988876664
Q ss_pred CeEEe
Q 014892 191 QDFRF 195 (416)
Q Consensus 191 DGfRl 195 (416)
.-|.+
T Consensus 158 ~~iHi 162 (351)
T PF00728_consen 158 KYIHI 162 (351)
T ss_dssp SEEEE
T ss_pred CeEEe
Confidence 44443
No 142
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=74.47 E-value=5.5 Score=39.97 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCCCcCCC-----CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcC
Q 014892 161 HGVPNIDH-----TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 161 ~~~~dln~-----~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~ 214 (416)
.+..+|+| .||.++++|.++.+.-. .-.+|||+|..+..|..+-+-+++++|
T Consensus 361 GDcVKLRYG~~peDsP~LW~~M~~Yt~~~A--~iF~G~RiDNCHSTPlhVaeylLd~AR 417 (423)
T PF14701_consen 361 GDCVKLRYGSKPEDSPFLWKHMKEYTELMA--KIFHGFRIDNCHSTPLHVAEYLLDAAR 417 (423)
T ss_pred CceeeecCCCCCCCCHHHHHHHHHHHHHHH--HhcCeeeeecCCCCcHHHHHHHHHHHH
Confidence 44556666 47999999999998885 678999999999999888777766543
No 143
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=74.42 E-value=3.9 Score=39.11 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=39.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCccc--------ccCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLP--------QNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 110 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-----~~~GY~~--------~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vi 110 (416)
+...+..-|+.+|+-|||.|.+.=+-+.. +..|+.+ .|+..++|.| -+-+.+.|+.|.++||.+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~Y--F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAY--FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----H--HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHH--HHHHHHHHHHHHHCCCeEE
Confidence 45666677999999999999985333321 2233333 3455555444 5779999999999999884
Q ss_pred EEEcccc
Q 014892 111 ADIVINH 117 (416)
Q Consensus 111 lD~V~NH 117 (416)
+|+=|
T Consensus 106 --lv~~w 110 (289)
T PF13204_consen 106 --LVPFW 110 (289)
T ss_dssp --EESS-
T ss_pred --EEEEE
Confidence 66655
No 144
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=74.32 E-value=45 Score=31.41 Aligned_cols=105 Identities=10% Similarity=-0.005 Sum_probs=71.6
Q ss_pred eEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q 014892 30 ILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 109 (416)
Q Consensus 30 ~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~V 109 (416)
.-+.+|.+... ..++.++...+.|++.|.+.= ..-..+..+++|+.++++|++|
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~--------------------~~~~~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAF--------------------HKHEFDEALPLIKAIKEKGYEV 125 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEec--------------------ccccHHHHHHHHHHHHHCCCeE
Confidence 55566665511 234456666778888877631 1115889999999999999998
Q ss_pred EEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcC
Q 014892 110 MADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVG 189 (416)
Q Consensus 110 ilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~g 189 (416)
.+-+..-.. + + .+++.+.++... +.|
T Consensus 126 ~~~~~~a~~---~-----------------------------------------------~---~~~~~~~~~~~~-~~g 151 (266)
T cd07944 126 FFNLMAISG---Y-----------------------------------------------S---DEELLELLELVN-EIK 151 (266)
T ss_pred EEEEEeecC---C-----------------------------------------------C---HHHHHHHHHHHH-hCC
Confidence 875533211 0 0 456777777776 889
Q ss_pred CCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 190 FQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 190 vDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
+|.+++ |.+..+.+.-..++...++
T Consensus 152 ~~~i~l~DT~G~~~P~~v~~lv~~l~ 177 (266)
T cd07944 152 PDVFYIVDSFGSMYPEDIKRIISLLR 177 (266)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 999987 8888888887777776664
No 145
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=74.05 E-value=4.9 Score=39.89 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=49.4
Q ss_pred CCCCcHHHHHhhhhhHHHcCCCEEEeCCC---CCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 40 CKHDWWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 40 ~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi---~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+.+++++.+...|..||.+||++|-+-=. .|..++.-| .+.-.++|.+-+++.|+||..=+-++
T Consensus 10 ~~~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~y-------------dWs~Y~~l~~~vr~~GLk~~~vmsfH 76 (402)
T PF01373_consen 10 TDDNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQY-------------DWSGYRELFEMVRDAGLKLQVVMSFH 76 (402)
T ss_dssp CTTSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB----------------HHHHHHHHHHHHTT-EEEEEEE-S
T ss_pred cCCCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEeee
Confidence 45678999999999999999999986321 233333333 36678999999999999999988888
Q ss_pred cCcCC
Q 014892 117 HRVGT 121 (416)
Q Consensus 117 H~~~~ 121 (416)
-++.+
T Consensus 77 ~cGgN 81 (402)
T PF01373_consen 77 QCGGN 81 (402)
T ss_dssp -BSSS
T ss_pred cCCCC
Confidence 77663
No 146
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=73.87 E-value=6.4 Score=39.61 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=40.3
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCC---CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG---SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~G---t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.++-+.++|+.|+|+|=|+=-+..- .+ . ...+|.+= ...-+.+.|+.|.++||+|++|+
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~~----~--~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~ 136 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-QA----T--DGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDL 136 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-hc----c--CCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEe
Confidence 5788999999999999874322221 01 0 00444443 23356777999999999999997
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=72.17 E-value=51 Score=30.87 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 175 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 175 ~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
+++.+.++... +.|+|.+++ |++..+.+.-..++.+.++
T Consensus 141 ~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 180 (263)
T cd07943 141 EELAEQAKLME-SYGADCVYVTDSAGAMLPDDVRERVRALR 180 (263)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 66777777775 899999887 7778888887777777665
No 148
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=71.27 E-value=8.1 Score=39.16 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=40.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM-ADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vi-lD~V~NH~~~ 120 (416)
++|..|+++||+.|.|.- ...+..-...+.-.. +.++..+.++.+++.|+.+| +|++++.-+.
T Consensus 142 e~l~~l~~~G~~rvslGv-------QS~~~~~L~~l~R~~-~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 142 EKLALLAARGVNRLSIGV-------QSFHDSELHALHRPQ-KRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHcCCCEEEEec-------ccCCHHHHHHhCCCC-CHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 455566666666665532 111111222333333 68899999999999999865 9999886654
No 149
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=71.06 E-value=10 Score=39.17 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=46.3
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEccccCcC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVINHRVG 120 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi-~VilD~V~NH~~~ 120 (416)
.++|..|++.||+.|.|.|=.- +..-...+. +-.+.++..+.++.|++.|+ .|-+|+++.-.+.
T Consensus 269 ~e~L~~Lk~~Gv~RISIGvQS~-------~d~vLk~ig-R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgE 333 (488)
T PRK08207 269 EEKLEVLKKYGVDRISINPQTM-------NDETLKAIG-RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGE 333 (488)
T ss_pred HHHHHHHHhcCCCeEEEcCCcC-------CHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCC
Confidence 4678888888888888877211 111123443 33589999999999999999 7889999875443
No 150
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=71.06 E-value=8.9 Score=37.82 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=43.4
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
++|..|+++||+.|.|.. ...+..-...+ -+-.+.++..+.++.+++.|+. |-+|+++...+.
T Consensus 101 e~l~~l~~~Gv~risiGv-------qS~~~~~l~~l-gR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-------QSFRDDKLLFL-GRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHcCCCEEEEec-------ccCChHHHHHh-CCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 556677777777777654 11222222334 3456799999999999999996 779999986554
No 151
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=70.35 E-value=9.2 Score=37.96 Aligned_cols=32 Identities=6% Similarity=-0.048 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 89 YGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
-.+.++..+.++.+++.|+. |.+|++++.-+.
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 35788899999999999999 999999987554
No 152
>PRK07094 biotin synthase; Provisional
Probab=70.31 E-value=8.6 Score=37.21 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=30.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 84 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 84 ~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
.+.+ -.+.++..+.++.+|+.||.|..++++.+-+.
T Consensus 157 ~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpge 192 (323)
T PRK07094 157 KLHP-GMSFENRIACLKDLKELGYEVGSGFMVGLPGQ 192 (323)
T ss_pred HhCC-CCCHHHHHHHHHHHHHcCCeecceEEEECCCC
Confidence 4445 36789999999999999999999999987554
No 153
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=69.70 E-value=17 Score=34.64 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=44.6
Q ss_pred eeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 34 GFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 34 ~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+|.|+-...-++..+.+-..-|+++|||+|-|.=+..++ ..+.+. -.+.+++|.+.....||||.|-+
T Consensus 45 if~~~~~~~~~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt~~--~l~~v~~lAdvfRpYGIkv~LSv 112 (328)
T PF07488_consen 45 IFFWDGLPRRDLTRYRDYARLLASIGINGVVLNNVNANP----------KLLTPE--YLDKVARLADVFRPYGIKVYLSV 112 (328)
T ss_dssp SSEETTEETS--HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGSTT--THHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccCCCcccchhHHHHHHHHHhhcCCceEEecccccCh----------hhcCHH--HHHHHHHHHHHHhhcCCEEEEEe
Confidence 455553334477888888888999999999999887764 223332 37899999999999999999965
No 154
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=69.07 E-value=61 Score=30.22 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=38.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
++.+.++++.++|++.|+|.+.-+.. +.. ..-+.++.++|.+.+.++||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~----~~~--------~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRS----WKG--------VRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCC----CCC--------CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 57788999999999999996543321 111 123567788888889999999764
No 155
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=68.72 E-value=13 Score=28.85 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=26.8
Q ss_pred EEecCCEEEEEE---CCEEEEEEcCCCC-C--------C-----CCCCcEEeeeCCceEE
Q 014892 371 LEAQSNLYSAII---GDKVCMKIGDGSW-C--------P-----AGKEWTLATSGHKYAV 413 (416)
Q Consensus 371 ~~~~~~~~~~~R---~~~~lvvinn~~~-~--------~-----~~~~~~~~ls~~~~~~ 413 (416)
++.+++.+|++| +.++++|++|... . + ++..++++|+...|.+
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv 61 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTV 61 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE-
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEE
Confidence 677889999999 4579999999332 1 1 2345677777666654
No 156
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.61 E-value=10 Score=35.62 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=37.6
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.++.++++|+++|.|.+.... ....+.++ +.++++++.+.+.++||+|..
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~---~~~~~~~~--------~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESD---ERLARLDW--------SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcc---cccccccC--------CHHHHHHHHHHHHHcCCCceE
Confidence 668899999999999999643110 01111111 467899999999999999874
No 157
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=17 Score=36.62 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=56.8
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCC----------CCcccccCCCCCCCCCCHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAP----------EGYLPQNLYSLNSSYGSEH 93 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~----------~GY~~~d~~~id~~~Gt~~ 93 (416)
+++||.|++---... ..+.-....-++.|+...|+.+- +.... ..=...-+-.+....|+..
T Consensus 108 ~~~gdeIv~s~~EH~-------sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~ 179 (405)
T COG0520 108 LKPGDEIVVSDLEHH-------SNIVPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVSNVTGTVN 179 (405)
T ss_pred hcCCCEEEEccCcch-------hhHHHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECccccccccc
Confidence 778888888766643 22444444555679988887654 33211 0111222345567889999
Q ss_pred HHHHHHHHHHHCCCEEEEEEc
Q 014892 94 LLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~VilD~V 114 (416)
+++++++.||++|..|++|.+
T Consensus 180 pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 180 PVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred hHHHHHHHHHHcCCEEEEECc
Confidence 999999999999999999986
No 158
>PRK01060 endonuclease IV; Provisional
Probab=68.11 E-value=11 Score=35.42 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 109 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~V 109 (416)
.++.+-|+.++++|+++|+|.+--+ +.+. +..-+.+++++|.+.+.++||++
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p----~~~~--------~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNP----QQWK--------RKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCC----CCCc--------CCCCCHHHHHHHHHHHHHcCCCC
Confidence 3478889999999999999965311 1111 11137888999999999999995
No 159
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=68.00 E-value=17 Score=31.02 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=40.8
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
-||.-+.+-.+-|+++||..-- .|-+.--|++.+.+.+++++++|++||+=
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-------------------~VvSAHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-------------------RVVSAHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-------------------EEEeccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 4799999999999999985321 23344458999999999999999999983
No 160
>PRK15447 putative protease; Provisional
Probab=67.52 E-value=13 Score=35.80 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=36.8
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
++.-...|++.|+++||+.-..-+.- . .| +.+++++.|+.||++|.+|.+
T Consensus 17 ~~~~~~~~~~~gaDaVY~g~~~~~~R-~------------~f-~~~~l~e~v~~~~~~gkkvyv 66 (301)
T PRK15447 17 VRDFYQRAADSPVDIVYLGETVCSKR-R------------EL-KVGDWLELAERLAAAGKEVVL 66 (301)
T ss_pred HHHHHHHHHcCCCCEEEECCccCCCc-c------------CC-CHHHHHHHHHHHHHcCCEEEE
Confidence 44455668899999999973211110 0 23 679999999999999999998
No 161
>PRK06256 biotin synthase; Validated
Probab=67.12 E-value=8.9 Score=37.36 Aligned_cols=59 Identities=5% Similarity=-0.014 Sum_probs=39.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
+.+..||+.|++.|.+.. ++ +..-|-.+.+. .+.++..+.++.||+.||+|...+++.+
T Consensus 153 e~l~~LkeaG~~~v~~~l--Et------s~~~~~~i~~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 153 EQAERLKEAGVDRYNHNL--ET------SRSYFPNVVTT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHHhCCCEEecCC--cc------CHHHHhhcCCC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 345556666666665532 11 12223345543 3789999999999999999999999976
No 162
>PRK05660 HemN family oxidoreductase; Provisional
Probab=67.02 E-value=12 Score=37.17 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=44.7
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM-ADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vi-lD~V~NH~~~ 120 (416)
++|..|+++|||.|.|.. ...++.-+..+. +..+.++..+-++.+++.|++.| +|+.+...+.
T Consensus 108 e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG-RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 567777788888887754 223333333444 33688999999999999999864 9999886554
No 163
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=66.57 E-value=31 Score=35.49 Aligned_cols=64 Identities=8% Similarity=0.207 Sum_probs=42.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
-+.-..+-++-+|+||+++-=++=-+..--+.|... . +.--..+=.++||++|.++||+.|+.+
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~----~--~N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA----Q--PNEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 455567889999999999987653332221122110 0 111234568999999999999999977
No 164
>PRK09936 hypothetical protein; Provisional
Probab=66.30 E-value=14 Score=35.06 Aligned_cols=83 Identities=16% Similarity=0.293 Sum_probs=56.8
Q ss_pred ceeeeeeeccCceeEEEeeecCCC-CCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCH-HH
Q 014892 17 LVKIRAVIRNGREILFQGFNWESC-KHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSE-HL 94 (416)
Q Consensus 17 ~~~~~~~~~~~~~~~~q~f~~~~~-~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~-~d 94 (416)
|+.+-|.....++++||-+..+.. ..-+++. .+.-++.+|+++|.+- ..+| -++.||+. .-
T Consensus 11 ~l~~~~~~~a~~g~F~Qp~n~d~~~~~~qWq~---~~~~~~~~G~~tLivQ-------Wt~y-------G~~~fg~~~g~ 73 (296)
T PRK09936 11 LLLVSPFSQAMKGIFYQPQNRDSQVTDTQWQG---LWSQLRLQGFDTLVVQ-------WTRY-------GDADFGGQRGW 73 (296)
T ss_pred HHHcCchhhccccceeccccccCCCCHHHHHH---HHHHHHHcCCcEEEEE-------eeec-------cCCCcccchHH
Confidence 344444444566899999988743 2335554 4566899999999862 1222 12366664 56
Q ss_pred HHHHHHHHHHCCCEEEEEEccc
Q 014892 95 LKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 95 ~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
|.+++++|++.||+|++=+-++
T Consensus 74 La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 74 LAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred HHHHHHHHHHcCCEEEEcccCC
Confidence 9999999999999999977554
No 165
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=66.16 E-value=17 Score=32.48 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 109 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~V 109 (416)
+...+..|++||+++|=+.|+-- +-..+||+.+.++|-++||.+
T Consensus 137 vetAiaml~dmG~~SiKffPm~G------------------l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 137 VETAIAMLKDMGGSSIKFFPMGG------------------LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp HHHHHHHHHHTT--EEEE---TT------------------TTTHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHHcCCCeeeEeecCC------------------cccHHHHHHHHHHHHHcCcee
Confidence 55668899999999999888632 225788999999998888876
No 166
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=66.13 E-value=29 Score=35.74 Aligned_cols=64 Identities=9% Similarity=0.239 Sum_probs=44.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.-..+-++-+++||+++.=++=-+..--+.|... . +.-...+=..+||++|+++||++|+.+
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~----~--~n~~~~~~Y~~~i~~l~~~gi~p~VtL 132 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDEL----T--PNQQGIAFYRSVFEECKKYGIEPLVTL 132 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCC----C--CCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 567778889999999999988765443221222110 1 111234568999999999999999876
No 167
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=65.86 E-value=16 Score=34.78 Aligned_cols=60 Identities=7% Similarity=-0.010 Sum_probs=39.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+.+..||+.|++.|.+.. + . ++.-|-.+.+. .+.++..+.++.+|+.||+|...+++.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~--E-~-----~~~~~~~i~~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNL--D-T-----SQEFYSNIIST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHHcCCCEEEEcc--c-C-----CHHHHhhccCC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 3445566666666666652 2 1 11112234433 5789999999999999999999988865
No 168
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=63.58 E-value=81 Score=30.86 Aligned_cols=69 Identities=10% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCH
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 171 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 171 (416)
.+..++.|+.++++|++|..=+..-|...
T Consensus 114 ~~~~~~~i~~ak~~G~~v~~~l~~a~~~~--------------------------------------------------- 142 (337)
T PRK08195 114 ADVSEQHIGLARELGMDTVGFLMMSHMAP--------------------------------------------------- 142 (337)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCCC---------------------------------------------------
Confidence 35689999999999998877554332111
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 172 FVRKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 172 ~v~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... ++|+|.+++ |.+..+.++-..++...++
T Consensus 143 --~e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 183 (337)
T PRK08195 143 --PEKLAEQAKLME-SYGAQCVYVVDSAGALLPEDVRDRVRALR 183 (337)
T ss_pred --HHHHHHHHHHHH-hCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 356777777775 899999985 8888888887777666654
No 169
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=63.55 E-value=15 Score=36.16 Aligned_cols=63 Identities=11% Similarity=0.065 Sum_probs=41.3
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
++|+-|+++|++.|.|.- ...+..-...+.. -.+.++..+.++.+++.|+. |-+|++++..+.
T Consensus 104 e~l~~lk~~G~nrisiGv-------QS~~d~vL~~l~R-~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgq 167 (353)
T PRK05904 104 SQINLLKKNKVNRISLGV-------QSMNNNILKQLNR-THTIQDSKEAINLLHKNGIYNISCDFLYCLPIL 167 (353)
T ss_pred HHHHHHHHcCCCEEEEec-------ccCCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCC
Confidence 556666666666666532 1111111223332 35789999999999999997 889999986544
No 170
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=63.29 E-value=34 Score=33.05 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=36.8
Q ss_pred HHHcCCCEEEeCCCCCCCCCCCc--ccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 55 ISKSGFTSVWLPPATHSFAPEGY--LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 55 Lk~LGv~~I~L~Pi~~~~~~~GY--~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.=|+..|..-...-++...+| .+.-+ ++ ...+.+|++++++|++|-++++ -++|.+...
T Consensus 42 ra~gg~glii~e~~~v~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~vh~~g~~~~~--Ql~h~G~~~ 104 (327)
T cd02803 42 RAKGGVGLIITEAAYVDPEGKGYPGQLGIY---DD--EQIPGLRKLTEAVHAHGAKIFA--QLAHAGRQA 104 (327)
T ss_pred HhCcCCcEEEECcEEEcCcccCCCCCcCcC---CH--HHHHHHHHHHHHHHhCCCHhhH--HhhCCCcCC
Confidence 34446777766555444432221 11100 00 1357899999999999999886 448887744
No 171
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=62.89 E-value=7 Score=37.36 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
++++++++.+-||++||+|.||.-
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 379999999999999999999983
No 172
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=62.76 E-value=17 Score=37.17 Aligned_cols=63 Identities=11% Similarity=0.182 Sum_probs=39.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
++|..|+++||+.|.|.. ...++.-...++ +-.+.++..+.++.+++.|++ |-+|+.+...+.
T Consensus 153 e~l~~L~~~G~~rvsiGv-------QS~~~~vl~~l~-R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgq 216 (453)
T PRK13347 153 EMLQALAALGFNRASFGV-------QDFDPQVQKAIN-RIQPEEMVARAVELLRAAGFESINFDLIYGLPHQ 216 (453)
T ss_pred HHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCC
Confidence 444455555555555433 122222222333 336789999999999999997 889999886554
No 173
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=62.52 E-value=1e+02 Score=29.16 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=73.0
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCC
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQG 124 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~ 124 (416)
++-+-.++..|.+-+++.|-+=|-+.. .+-.=.+.++++ .+.+.|.++|.=+-+-....
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps~~g-------------~~~~~~~~eelr----~~~~gg~~pIAYlsIg~ae~---- 87 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPSYCG-------------PFNTPWTIEELR----TKADGGVKPIAYLSIGEAES---- 87 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEeccccC-------------CCCCcCcHHHHH----HHhcCCeeEEEEEechhhhh----
Confidence 555667788888888888887773222 222224578887 45556777776555543332
Q ss_pred CCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 125 HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 125 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
|.. +|+..-...-++ +- ....+.|++--...|..|+=++-+.+.++..+ +.|+||.-+|.+...
T Consensus 88 ----yR~------Ywd~~w~~~~p~-wL-g~edP~W~Gny~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 88 ----YRF------YWDKYWLTGRPD-WL-GEEDPEWPGNYAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred ----hhh------HhhhhhhcCCcc-cc-cCCCCCCCCCceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 110 111110000000 00 00112244445578889999999999999998 999999999988654
No 174
>PTZ00445 p36-lilke protein; Provisional
Probab=62.24 E-value=19 Score=32.66 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHhhhhhHHHcCCCEEEe------CCCCCCCCCCCcccccCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWL------PPATHSFAPEGYLPQNLYSLNSSYGS--EHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L------~Pi~~~~~~~GY~~~d~~~id~~~Gt--~~d~~~Lv~~aH~~Gi~Vil 111 (416)
-+.+..-.+.|++.||.+|-+ .+++ ..||+-.+ +-+..+++ ..+|+.|++++.+.||+|++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H----sgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKH----SGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhh----cccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 445555677899999999975 2222 23454432 22333332 35699999999999999986
No 175
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=61.71 E-value=1e+02 Score=30.09 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 175 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 175 ~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
+++.+.++... ++|+|.+.+ |.+..+.++-..++...++
T Consensus 143 e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~ 182 (333)
T TIGR03217 143 EKLAEQAKLME-SYGADCVYIVDSAGAMLPDDVRDRVRALK 182 (333)
T ss_pred HHHHHHHHHHH-hcCCCEEEEccCCCCCCHHHHHHHHHHHH
Confidence 56777777765 899999887 8888888877777666654
No 176
>PLN02803 beta-amylase
Probab=61.69 E-value=27 Score=36.00 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=51.8
Q ss_pred CCCcH---HHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 41 KHDWW---RNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 41 ~~G~~---~gi~~~LdyLk~LGv~~I~L~P---i~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.+|.+ ++|...|..||.+||++|-+-= |.|..+..-|+ +.-.++|++-+++.|+||..=+-
T Consensus 99 ~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd-------------WsgY~~l~~mvr~~GLKlq~vmS 165 (548)
T PLN02803 99 MGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN-------------WEGYAELVQMVQKHGLKLQVVMS 165 (548)
T ss_pred cCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEE
Confidence 44556 8899999999999999998642 22333333343 56688999999999999999888
Q ss_pred cccCcCC
Q 014892 115 INHRVGT 121 (416)
Q Consensus 115 ~NH~~~~ 121 (416)
++.++.+
T Consensus 166 FHqCGGN 172 (548)
T PLN02803 166 FHQCGGN 172 (548)
T ss_pred ecccCCC
Confidence 8877774
No 177
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=60.85 E-value=18 Score=36.95 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=39.4
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
+.|..|+++|++.|.|.. ...+..-.-.+.. -.+.++..+.++.+++.|++ |-+|+++...+.
T Consensus 152 e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~r-~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGV-------QDFNKEVQQAVNR-IQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhCC-CCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 445555555555555533 1122211223333 35788999999999999997 779999886554
No 178
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=60.25 E-value=20 Score=36.74 Aligned_cols=27 Identities=0% Similarity=0.177 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
+.++..+.++.+|+.||.|..++++..
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGl 347 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGL 347 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeC
Confidence 578899999999999999999999864
No 179
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=59.53 E-value=22 Score=36.35 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=41.4
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi-~VilD~V~NH~~~ 120 (416)
++|..|+++|++.|.|.. ...+..-...+. +..+.++..+.++.+++.|+ .|-+|+.++..+.
T Consensus 152 e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~-r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 152 EMLDALRELGFNRLSLGV-------QDFDPEVQKAVN-RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 455566666666666543 111221122333 33578999999999999999 7999999886655
No 180
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=59.24 E-value=1e+02 Score=29.70 Aligned_cols=97 Identities=13% Similarity=0.041 Sum_probs=56.7
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCC
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQG 124 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~ 124 (416)
.+.=.+.+..+++.|.|+=.--| +...+|.-.-...|--+ ..++|++||++|+++||+.+.=+-+-
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAP--KdDpyhr~~Wre~Yp~~----el~~l~~L~~~a~~~~V~Fv~aisPg-------- 79 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAP--KDDPYHRSKWREPYPEE----ELAELKELADAAKANGVDFVYAISPG-------- 79 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE----TT-TTTTTTTTS---HH----HHHHHHHHHHHHHHTT-EEEEEEBGT--------
T ss_pred HHHHHHHHHHHHHcCCceEEECC--CCChHHHhhhcccCCHH----HHHHHHHHHHHHHHcCCEEEEEECcc--------
Confidence 77778888899999999877665 11123332222222222 36889999999999999988744111
Q ss_pred CCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014892 125 HGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRF 195 (416)
Q Consensus 125 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRl 195 (416)
.++++.+++..+.|+.=+.... +.||+-|-+
T Consensus 80 ---------------------------------------~~~~~s~~~d~~~L~~K~~ql~-~lGvr~Fai 110 (306)
T PF07555_consen 80 ---------------------------------------LDICYSSEEDFEALKAKFDQLY-DLGVRSFAI 110 (306)
T ss_dssp ---------------------------------------TT--TSHHHHHHHHHHHHHHHH-CTT--EEEE
T ss_pred ---------------------------------------cccccCcHHHHHHHHHHHHHHH-hcCCCEEEE
Confidence 1123445666777777777776 899998865
No 181
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.17 E-value=20 Score=33.76 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=38.2
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 110 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vi 110 (416)
.+.+.|+.++++|+++|.|.+-... .+..+.+ =+.++.++|.+.+.++||+|.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~---~~~~~~~--------~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETD---DRLSRLD--------WSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcc---chhhccC--------CCHHHHHHHHHHHHHcCCCce
Confidence 3778899999999999999542110 0111111 157889999999999999986
No 182
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.49 E-value=25 Score=32.95 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.|+.++++|+++|.|.+-. .+-|. +.+ +.++.++|.+.+.+.||+|..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~----~~~~~--------~~~-~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGR----PHAFA--------PDL-KAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCC----ccccc--------ccc-CchHHHHHHHHHHHcCCeEEE
Confidence 8899999999999999994210 11111 111 346789999999999999853
No 183
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.94 E-value=1.1e+02 Score=30.38 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccC-cCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHR-VGT 121 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~-~~~ 121 (416)
.+.||+|++++|++|-++++=+ +|. +..
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr~ 110 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGRV 110 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCCc
Confidence 4679999999999999999654 686 553
No 184
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=57.86 E-value=14 Score=33.83 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=21.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPAT 69 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~ 69 (416)
+...+.+.++...+.|+++|.++|-+
T Consensus 19 ~~~d~~~~~~~~~~~g~~av~v~~~~ 44 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTKGI 44 (235)
T ss_pred cccCHHHHHHHHHhcCCCEEEeChHH
Confidence 45568888888999999999999755
No 185
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=57.01 E-value=1.4e+02 Score=29.63 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.+++|++++|++|-++++=+ +|.+...
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL--~H~G~~~ 110 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIEL--WHGGAHA 110 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEec--ccCCCCC
Confidence 5789999999999999999866 5888743
No 186
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=56.88 E-value=23 Score=33.85 Aligned_cols=47 Identities=13% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc------HHHHHHHHHhcCC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS------AKYVKEYIEGARP 215 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~------~~~~~~~~~~~~~ 215 (416)
.+|+.|+.+++.+..+++++|.||+-+|--...+ ..|++++.+++++
T Consensus 84 ~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~ 136 (298)
T cd06549 84 ADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPA 136 (298)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhh
Confidence 5788899999999888899999999999753322 2477777777654
No 187
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=56.76 E-value=59 Score=33.41 Aligned_cols=63 Identities=13% Similarity=0.256 Sum_probs=43.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.-..+-+.-+|+||+++-=++=-+..--..|.. .++ --..+=.++||++|.++||+.|+=+
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~-----~~N--~~gl~~Y~~lid~l~~~GI~P~VTL 113 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-----EVN--EKGVEFYHKLFAECHKRHVEPFVTL 113 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCC-----CcC--HHHHHHHHHHHHHHHHcCCEEEEec
Confidence 56677888999999999998775433322222321 121 1234558999999999999999843
No 188
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=56.70 E-value=75 Score=29.81 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+++ |.+..+.+.-..++.+.++
T Consensus 142 ~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 142 LDFLIEVVEAAI-EAGATTINIPDTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 456778888886 899999987 7788888887777776665
No 189
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=56.51 E-value=28 Score=34.16 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=40.3
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
++|..|+++|||.|.|.. ...+..-...++ +-.+.++..+.++.+++.|+. |-+|++++-.+.
T Consensus 99 e~l~~l~~~GvnRiSiGv-------QS~~~~~L~~lg-R~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgq 162 (350)
T PRK08446 99 AWLKGMKNLGVNRISFGV-------QSFNEDKLKFLG-RIHSQKQIIKAIENAKKAGFENISIDLIYDTPLD 162 (350)
T ss_pred HHHHHHHHcCCCEEEEec-------ccCCHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC
Confidence 556666666666665432 112222222332 344689999999999999997 669999986543
No 190
>PLN02389 biotin synthase
Probab=56.49 E-value=33 Score=34.13 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 90 GSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+.++..+.++.||+.||+|..=+++.|
T Consensus 210 ~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 210 RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 3889999999999999999999999988
No 191
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=56.41 E-value=24 Score=34.99 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 89 YGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
-.+.++..+.|+.+++.|+. |-+|+++..-+.
T Consensus 132 ~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 132 THNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 45788999999999999998 678999886655
No 192
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=56.13 E-value=14 Score=36.40 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHCCCEEEE
Q 014892 94 LLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~Vil 111 (416)
....||++||++|++|+.
T Consensus 279 ~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 279 VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred CCHHHHHHHHHcCCEEEE
Confidence 356899999999999986
No 193
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=55.40 E-value=25 Score=32.62 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEccc
Q 014892 93 HLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 93 ~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
|++..+++.|+++||+.++=+.++
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCC
Confidence 689999999999999999855544
No 194
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=55.28 E-value=65 Score=33.09 Aligned_cols=63 Identities=13% Similarity=0.261 Sum_probs=44.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.-..+-++-+|+||+++-=++=-+..--+.|-. .++ --..+=.++||++|.++||+.|+-+
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g-----~vN--~~gl~~Y~~lid~l~~~GI~P~VTL 114 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYG-----EVN--PKGVEYYHRLFAECHKRHVEPFVTL 114 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCC-----CcC--HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 56777888999999999998775433322222221 122 1235668999999999999999866
No 195
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=55.17 E-value=1.3e+02 Score=29.64 Aligned_cols=29 Identities=7% Similarity=-0.063 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.|+++++++|++|-++++ -++|.+...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 57799999999999999998 557988754
No 196
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=54.81 E-value=23 Score=36.92 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=46.8
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
.++|+.|+++|+|.|+|..= ..++-+ ...++. --+.++..+.++.+++.|++|.+|+.++--+.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQ------S~~d~V-L~~inR-ght~~~v~~Ai~~lr~~G~~v~~~LM~GLPgq 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQ------TIYNDI-LERTKR-GHTVRDVVEATRLLRDAGLKVVYHIMPGLPGS 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECc------cCCHHH-HHHhCC-CCCHHHHHHHHHHHHHcCCeEEEEeecCCCCC
Confidence 47899999999999998751 111111 123333 23688899999999999999999999985543
No 197
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=54.63 E-value=89 Score=29.98 Aligned_cols=26 Identities=0% Similarity=0.195 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+.+++.+.++.++++||+|..|+.++
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 57899999999999999999999876
No 198
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=54.29 E-value=27 Score=31.67 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPAT 69 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~ 69 (416)
-+...+..||+||.++|=..|+-
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~ 158 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMG 158 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecC
Confidence 36677889999999999999875
No 199
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=53.82 E-value=73 Score=32.49 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-ccccCcC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADI-VINHRVG 120 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~-V~NH~~~ 120 (416)
|.+|.+++|+-|.-||||||-.+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999877 5677776
No 200
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.65 E-value=64 Score=29.87 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+++ |.+..+.++-+.++.+.++
T Consensus 145 ~~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~li~~l~ 185 (265)
T cd03174 145 PEYVLEVAKALE-EAGADEISLKDTVGLATPEEVAELVKALR 185 (265)
T ss_pred HHHHHHHHHHHH-HcCCCEEEechhcCCcCHHHHHHHHHHHH
Confidence 456788888887 999999998 7777788877777766654
No 201
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=53.49 E-value=61 Score=30.67 Aligned_cols=53 Identities=6% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCH
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQH 171 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~ 171 (416)
.+++..-|..++++||+|+.=++++ -|+
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~G-----LPg----------------------------------------------- 194 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLING-----LPG----------------------------------------------- 194 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeC-----CCC-----------------------------------------------
Confidence 5678999999999999998755443 110
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecc
Q 014892 172 FVRKDIIAWLRWLRNTVGFQDFRFDF 197 (416)
Q Consensus 172 ~v~~~l~~~~~~w~~~~gvDGfRlD~ 197 (416)
+-++.+.+.++... ..||||+.+--
T Consensus 195 E~~~~mleTak~v~-~~~v~GIKlH~ 219 (312)
T COG1242 195 ETRDEMLETAKIVA-ELGVDGIKLHP 219 (312)
T ss_pred CCHHHHHHHHHHHH-hcCCceEEEEE
Confidence 11678999999665 99999998864
No 202
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=53.02 E-value=2.4e+02 Score=29.92 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+++ |++..+.+.-..++..+++
T Consensus 148 ~~~~~~~~~~~~-~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk 188 (582)
T TIGR01108 148 LETYLDLAEELL-EMGVDSICIKDMAGILTPKAAYELVSALK 188 (582)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 467888888886 899998886 8888887776666655543
No 203
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=52.78 E-value=30 Score=34.73 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=39.3
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
++|..|+++|||.|.|.. .-.+..-...++ +--+.++..+.++.+++.|+. |-+|+.++.-+.
T Consensus 116 e~l~~l~~~GvnrislGv-------QS~~d~~L~~l~-R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV-------QAFQDELLALCG-RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HHHHHHHHCCCCEEEEEc-------ccCCHHHHHHhC-CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 445555555555555543 111111122233 233688899999999999999 779999986654
No 204
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.65 E-value=87 Score=30.53 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.|++|++++|++|-++++=+ +|.+...
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~~ 109 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQS 109 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcCC
Confidence 5789999999999999998755 7887743
No 205
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.21 E-value=1e+02 Score=28.71 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+++ |.+..+.+.-..++...++
T Consensus 138 ~~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 138 PDFLIEFAEVAQ-EAGADRLRFADTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHHH-HCCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 356777887776 899999887 7778888877777776665
No 206
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=52.10 E-value=1.8e+02 Score=28.43 Aligned_cols=68 Identities=9% Similarity=-0.036 Sum_probs=43.1
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCC---HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt---~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+++.....++=|+..|..-.++.++...++ +. .+..-+ .+.+++|++++|++|-++++ -++|.+...
T Consensus 34 ~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~-----~~~l~~d~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~~ 104 (343)
T cd04734 34 RYIAYHEERARGGAGLIITEGSSVHPSDSPA-FG-----NLNASDDEIIPGFRRLAEAVHAHGAVIMI--QLTHLGRRG 104 (343)
T ss_pred HHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CC-----ccccCCHHHHHHHHHHHHHHHhcCCeEEE--eccCCCcCc
Confidence 3445555556667888877665555432222 11 111112 46799999999999999998 568877644
No 207
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=52.07 E-value=32 Score=34.04 Aligned_cols=64 Identities=13% Similarity=0.117 Sum_probs=42.5
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
.++|+.|+++|||.|.|..=. .+..-...+.- --+.++..+-++.+++.|+. |-+|+++..-+.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS-------~~~~~L~~l~R-~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQT-------FDDPLLKLLGR-THSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHHCCCCEEEEcccc-------CCHHHHHHcCC-CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 356777778888877765411 11111223332 22678899999999999996 889999986555
No 208
>PLN02801 beta-amylase
Probab=51.89 E-value=47 Score=34.06 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=50.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~P---i~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+++...|..||.+||++|-+-= |.|..+..-| .+...++|++-+++.|+||..=+-++.++.
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~l~~mvr~~GLKlq~vmSFHqCGG 101 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQY-------------DWSAYRSLFELVQSFGLKIQAIMSFHQCGG 101 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcc-------------CcHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 567899999999999999998642 2233333333 356789999999999999999888887777
Q ss_pred C
Q 014892 121 T 121 (416)
Q Consensus 121 ~ 121 (416)
+
T Consensus 102 N 102 (517)
T PLN02801 102 N 102 (517)
T ss_pred C
Confidence 4
No 209
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=51.73 E-value=37 Score=31.55 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.8
Q ss_pred HHhhhhhHHHcCCCEEEeCCC
Q 014892 48 LERKVPDISKSGFTSVWLPPA 68 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi 68 (416)
+.+.|+.++++|+++|.|...
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~ 37 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFP 37 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCC
Confidence 677789999999999998653
No 210
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=50.93 E-value=82 Score=30.67 Aligned_cols=68 Identities=10% Similarity=-0.072 Sum_probs=41.0
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCC--cccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEG--YLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~G--Y~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.++.....++=|+..|..-....++...+ +.+.-+ ++ .-.+.|++|++++|++|-++++=+ +|.+...
T Consensus 35 ~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~---~d--~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~ 104 (336)
T cd02932 35 HLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLW---ND--EQIEALKRIVDFIHSQGAKIGIQL--AHAGRKA 104 (336)
T ss_pred HHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeec---CH--HHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCC
Confidence 33334444555788887765554443222 111100 11 135789999999999999998765 7877743
No 211
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=50.82 E-value=38 Score=30.78 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+.++.++||+.+-+.|..|.-.
T Consensus 117 ~~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 117 STEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred chHHHHHHHHHHHhcccEEehh
Confidence 3688999999999999988753
No 212
>PLN02905 beta-amylase
Probab=50.51 E-value=50 Score=34.80 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=50.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCC---CCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi---~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+.+.|...|..||.+||++|-+-=. .|..+..-|+ +.-+++|++-+.+.|+||..=+-|+-++.
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd-------------WsgY~~L~~mvr~~GLKlqvVMSFHqCGG 350 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN-------------WNGYKRLFQMVRELKLKLQVVMSFHECGG 350 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 7889999999999999999986432 2333333333 56688999999999999999888887777
Q ss_pred C
Q 014892 121 T 121 (416)
Q Consensus 121 ~ 121 (416)
+
T Consensus 351 N 351 (702)
T PLN02905 351 N 351 (702)
T ss_pred C
Confidence 4
No 213
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=50.43 E-value=30 Score=28.02 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=38.1
Q ss_pred hHHHcCCCEEEeCCCCCCCC-CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 54 DISKSGFTSVWLPPATHSFA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 54 yLk~LGv~~I~L~Pi~~~~~-~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+..+|.+++.+.|...... .......|..-+=+.=|...+..++++.||++|++||.
T Consensus 21 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 21 TLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 45678999998866422111 11122233222235668889999999999999999997
No 214
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=49.83 E-value=49 Score=32.52 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=34.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+++..+-+-|+++||+.=- .. +..++. .+ | +.+++++.|+-||++|.|+++
T Consensus 17 ~~l~~ai~~GADaVY~G~~-~~-~~R~~a-~n-------f-s~~~l~e~i~~ah~~gkk~~V 67 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEK-EF-GLRRRA-LN-------F-SVEDLAEAVELAHSAGKKVYV 67 (347)
T ss_pred HHHHHHHHcCCCEEEeCCc-cc-cccccc-cc-------C-CHHHHHHHHHHHHHcCCeEEE
Confidence 3445555668999998743 21 122222 22 2 467799999999999999987
No 215
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=49.50 E-value=27 Score=30.08 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=39.0
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+.++.|+++|+..|+++- .+.+...+..+...-++.++..+.++.++++|+.|...+++...
T Consensus 89 ~~~~~l~~~g~~~i~i~l-------e~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~ 150 (204)
T cd01335 89 ELLKELKELGLDGVGVSL-------DSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLG 150 (204)
T ss_pred HHHHHHHhCCCceEEEEc-------ccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 444555555555555532 11111122223235567899999999999999999999988643
No 216
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=49.35 E-value=1.1e+02 Score=31.56 Aligned_cols=64 Identities=11% Similarity=0.223 Sum_probs=43.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.-..+-++-+|+||+++-=++=-+..--+.|-.. .++ -...+=..+||++|+++||+.|+=+
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~----~~N--~~gl~~Y~~lId~L~~~GI~P~VTL 134 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDEL----EPN--EAGLQFYEDIFKECHKYGIEPLVTI 134 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCC----CCC--HHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 577788999999999999987764333221222110 111 1224558899999999999999855
No 217
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=49.27 E-value=74 Score=30.60 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=73.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~--Gi~VilD~V~NH~~~~ 121 (416)
.++.+.+.+..+.++||++|-|-|+-+.....|= -+.+| ..-..+-|+++++. .|-||.|+.+-.-...
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs-----~A~~~----~g~v~~air~iK~~~pdl~vi~DVcLc~YT~h 129 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGS-----DTWDD----NGLLARMVRTIKAAVPEMMVIPDICFCEYTDH 129 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcc-----cccCC----CChHHHHHHHHHHHCCCeEEEeeeecccCCCC
Confidence 5899999999999999999999998322111111 11111 12244445555554 8999999988633321
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
. | |... -+=...|.+..+.+.+...-.. +.|+|-. +...|
T Consensus 130 G-----------------H-----------------cGil--~~g~i~ND~Tl~~L~~~Als~A-~AGADiV---APSdM 169 (322)
T PRK13384 130 G-----------------H-----------------CGVL--HNDEVDNDATVENLVKQSVTAA-KAGADML---APSAM 169 (322)
T ss_pred C-----------------c-----------------eeec--cCCcCccHHHHHHHHHHHHHHH-HcCCCeE---ecccc
Confidence 0 0 0000 0012457888888988888886 8888754 33445
Q ss_pred cHHHHHHHHHhc
Q 014892 202 SAKYVKEYIEGA 213 (416)
Q Consensus 202 ~~~~~~~~~~~~ 213 (416)
-..-...+++++
T Consensus 170 MDGrV~aIR~aL 181 (322)
T PRK13384 170 MDGQVKAIRQGL 181 (322)
T ss_pred cccHHHHHHHHH
Confidence 445555565554
No 218
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=48.94 E-value=50 Score=30.46 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=16.4
Q ss_pred HHhhhhhHHHcCCCEEEeCC
Q 014892 48 LERKVPDISKSGFTSVWLPP 67 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~P 67 (416)
+.+.++-++++|+++|.|..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 66777778899999999953
No 219
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=48.59 E-value=2.8e+02 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
.+.|+++++++|++|-++++=+ +|.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCccc
Confidence 5789999999999999999855 899964
No 220
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=48.45 E-value=31 Score=30.05 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=36.9
Q ss_pred hhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 51 KVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 51 ~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
..--|+.||..+..+. .|+..++...-..+.+.++++.+++.|++|++|.+.-
T Consensus 42 ~a~~l~~LG~~~~~~~-------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 42 VAVALARLGVSVTLVG-------------ADAVVISGLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHCCCcEEEEE-------------ccEEEEecccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 3345778899888777 2333333221114789999999999999999999753
No 221
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=47.83 E-value=53 Score=30.40 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+.++.+++++.||++||++++=+-+
T Consensus 114 ~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 114 YPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3568999999999999999995544
No 222
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=47.43 E-value=19 Score=29.40 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 86 NSSYGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 86 d~~~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
..++-+..|++.+-+...++||+|++|
T Consensus 15 G~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 15 GQRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred CcEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 356667899999999999999999987
No 223
>PLN02161 beta-amylase
Probab=47.41 E-value=63 Score=33.20 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=49.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~P---i~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+.+.+...|..||.+||++|-+-= |.|..+..-|+ +.-.++|++-+.+.|+||..=+-++.++.
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd-------------WsgY~~l~~mvr~~GLKlq~vmSFHqCGG 181 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK-------------WSLYEELFRLISEAGLKLHVALCFHSNMH 181 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 577899999999999999998642 22333333333 56688999999999999999888887665
Q ss_pred C
Q 014892 121 T 121 (416)
Q Consensus 121 ~ 121 (416)
+
T Consensus 182 N 182 (531)
T PLN02161 182 L 182 (531)
T ss_pred C
Confidence 3
No 224
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=47.37 E-value=1.1e+02 Score=31.59 Aligned_cols=64 Identities=9% Similarity=0.193 Sum_probs=41.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.--.+-++-+|+||+++-=++=-+..--+.|... .+ .--..+=.++||++|.++||+.|+=+
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~----~~--N~~gl~~Y~~lid~L~~~GI~P~VTL 128 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDEL----EP--NEEGLQFYDDLFDECLKQGIEPVVTL 128 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCC----CC--CHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 566778899999999999877653222211122110 01 11224458999999999999999854
No 225
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.26 E-value=1.1e+02 Score=30.19 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.+|+|++++|++|-+++ +-++|.+...
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~~ 105 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRMA 105 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCCC
Confidence 6789999999999999988 4668988753
No 226
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=47.18 E-value=94 Score=29.92 Aligned_cols=75 Identities=13% Similarity=0.017 Sum_probs=54.6
Q ss_pred eeeccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHH
Q 014892 22 AVIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 101 (416)
Q Consensus 22 ~~~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~ 101 (416)
|-+..+.++|+-. .. +.+.+++.|+.|+++|++.|-+.+-+... ...+-+. +|=++++|+.+-+.
T Consensus 205 pgi~~~TgiIVGl--GE-----Teee~~etl~~Lrelg~d~v~igqYl~p~-~~~~~v~-------~~~~p~~f~~~~~~ 269 (302)
T TIGR00510 205 PNLPTKSGIMVGL--GE-----TNEEIKQTLKDLRDHGVTMVTLGQYLRPS-RRHLPVK-------RYVSPEEFDYYRSV 269 (302)
T ss_pred CCCeecceEEEEC--CC-----CHHHHHHHHHHHHhcCCCEEEeecccCCC-CCCCccc-------cCCCHHHHHHHHHH
Confidence 3344454555544 44 68999999999999999999998866542 2333333 45578999999999
Q ss_pred HHHCCCEEEE
Q 014892 102 MKQHKVRAMA 111 (416)
Q Consensus 102 aH~~Gi~Vil 111 (416)
|-+.|.+-+.
T Consensus 270 a~~~gf~~v~ 279 (302)
T TIGR00510 270 ALEMGFLHAA 279 (302)
T ss_pred HHHcCChheE
Confidence 9999987654
No 227
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=47.14 E-value=59 Score=32.17 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=41.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
|++.+.+.+. + .+.+|.+.|++.. .|..+. +.+.+++|.+-|+++|+-+|.|=|.-..+
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~~---~G~~~~----------~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQGE---GGIRPA----------PDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccCC---CCCcCC----------CHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 5666655553 1 4778999988433 231111 36899999999999999999999976443
No 228
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=47.03 E-value=1.6e+02 Score=27.97 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=35.4
Q ss_pred HHcCCCEEEeCCCCCCCCCCCcccccCCCCC--CCCCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 56 SKSGFTSVWLPPATHSFAPEGYLPQNLYSLN--SSYGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 56 k~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id--~~~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
.+-.++.|-|.=+...+. .|+-..|+-... ..++.-.++.+-|+.|+++|+||+|=
T Consensus 21 ~~~~~dii~i~Fl~~~~~-~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 21 DTGNYDIVNISFLNVFGS-GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred CCCCccEEEEEeEcccCC-CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 344578887765555543 343334432222 11225678999999999999999993
No 229
>PRK05967 cystathionine beta-lyase; Provisional
Probab=46.55 E-value=26 Score=35.09 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=39.5
Q ss_pred hHHHcCCCEEEeCCCCC----CCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 54 DISKSGFTSVWLPPATH----SFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 54 yLk~LGv~~I~L~Pi~~----~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
-++.+|+...++.|-.. ..-...-...-.-.+....++..+++++++.||++|+-||+|-++.
T Consensus 123 ~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 123 MLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 35677887777644210 0000111111112233346889999999999999999999999885
No 230
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=46.53 E-value=15 Score=20.99 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHhhhhhHHHcCCC
Q 014892 45 WRNLERKVPDISKSGFT 61 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~ 61 (416)
-+-|..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 56788999999999985
No 231
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=46.40 E-value=78 Score=30.42 Aligned_cols=125 Identities=9% Similarity=-0.000 Sum_probs=72.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~--Gi~VilD~V~NH~~~~ 121 (416)
.++.+.+.+..+.++||++|-|-|+-+...-... .=...+....-+.+-|+++++. .|-||-|+.+-.-...
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~------~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~h 122 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDR------SGSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSH 122 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcC------ccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCC
Confidence 5899999999999999999999999422100000 0001111122234444444443 8999999988643321
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
. +.. +.. . +=...|.+..+.+.+...-.. +.|+|-. +...|
T Consensus 123 G-----------------HcG-il~-~----------------~g~vdND~Tl~~L~k~Avs~A-~AGADiV---APSdM 163 (320)
T cd04824 123 G-----------------HCG-ILY-E----------------DGTINNEASVKRLAEVALAYA-KAGAHIV---APSDM 163 (320)
T ss_pred C-----------------cce-eEC-C----------------CCcCcCHHHHHHHHHHHHHHH-HhCCCEE---ecccc
Confidence 0 000 000 0 012457788888888888886 8888754 33444
Q ss_pred cHHHHHHHHHhc
Q 014892 202 SAKYVKEYIEGA 213 (416)
Q Consensus 202 ~~~~~~~~~~~~ 213 (416)
-..-...+++++
T Consensus 164 MDGrV~aIR~aL 175 (320)
T cd04824 164 MDGRVRAIKQAL 175 (320)
T ss_pred cccHHHHHHHHH
Confidence 444455555554
No 232
>PLN00197 beta-amylase; Provisional
Probab=46.37 E-value=63 Score=33.53 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=49.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCC---CCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPP---ATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~P---i~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.+...|..||.+||++|-+-= |.|..+..-|+ +.-+++|++-+.+.|+||..=+-|+.++.
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd-------------WsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN-------------WGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC-------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 556799999999999999998642 22333333343 56688999999999999999888887777
Q ss_pred C
Q 014892 121 T 121 (416)
Q Consensus 121 ~ 121 (416)
+
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 4
No 233
>PRK08114 cystathionine beta-lyase; Provisional
Probab=46.24 E-value=39 Score=33.86 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=51.4
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhh-hhHHHcCCCEEEeCCCCCCC----CCCCcccccCCCCCCCCCCHHHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKV-PDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKAL 98 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~L-dyLk~LGv~~I~L~Pi~~~~----~~~GY~~~d~~~id~~~Gt~~d~~~L 98 (416)
+.+||.++..-- . +.+...-+ ..++..||+..++.|.-... -...-...-.-.+....|...|++++
T Consensus 98 l~~GD~Vv~~~~-----~---Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~I 169 (395)
T PRK08114 98 VEQGDHVLMTGT-----A---YEPTQDFCSKILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPGSITMEVHDVPAI 169 (395)
T ss_pred cCCCCEEEEeCC-----C---cHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCCCCCCEeecHHHH
Confidence 567887776511 1 22223223 46788999999987631100 00111222122344556777899999
Q ss_pred HHHHHHCC--CEEEEEEcc
Q 014892 99 LHKMKQHK--VRAMADIVI 115 (416)
Q Consensus 99 v~~aH~~G--i~VilD~V~ 115 (416)
++.||++| +.||+|-++
T Consensus 170 a~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 170 VAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHHHhCCCCEEEEECCC
Confidence 99999985 999999875
No 234
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.11 E-value=65 Score=30.14 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
|+.+-+..+++.|++.|-+... ..++..+++++|+++|++.++=+.++
T Consensus 103 G~e~f~~~~~~aGvdgviipDl----------------------p~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL----------------------PLEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC----------------------ChHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5555566666666666555421 24789999999999999988644443
No 235
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=45.79 E-value=19 Score=33.06 Aligned_cols=25 Identities=4% Similarity=0.146 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 3689999999999999999986654
No 236
>PLN02705 beta-amylase
Probab=45.75 E-value=60 Score=34.08 Aligned_cols=65 Identities=9% Similarity=0.153 Sum_probs=49.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCC---CCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPA---THSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi---~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+-+.|...|..||.+||++|-+-=. .|..+..-| .+.-+++|++-+.+.|+||..=+-|.-++.
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Y-------------dWsgY~~L~~mvr~~GLKlqvVmSFHqCGG 332 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKY-------------VWSGYRELFNIIREFKLKLQVVMAFHEYGG 332 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcC-------------CcHHHHHHHHHHHHcCCeEEEEEEeeccCC
Confidence 5688999999999999999986432 233333333 356688999999999999999888887776
Q ss_pred C
Q 014892 121 T 121 (416)
Q Consensus 121 ~ 121 (416)
+
T Consensus 333 N 333 (681)
T PLN02705 333 N 333 (681)
T ss_pred C
Confidence 4
No 237
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=45.56 E-value=46 Score=32.91 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=40.2
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~NH~~~ 120 (416)
++|..|+++|++.|.|.. ++. +..-...++ +..+.++..+-++.+++.|+. |-+|+.++-.+.
T Consensus 100 e~l~~l~~~G~~rvsiGv--qS~-----~d~~L~~l~-R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL--QAW-----QNSLLKYLG-RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred HHHHHHHHcCCCEEEEEC--ccC-----CHHHHHHcC-CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 456666666666666543 111 111112232 334788999999999999997 779999885554
No 238
>TIGR03586 PseI pseudaminic acid synthase.
Probab=45.45 E-value=68 Score=31.24 Aligned_cols=118 Identities=10% Similarity=0.154 Sum_probs=74.9
Q ss_pred CCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC----C-CCCccccc-CCCCCCCC-------CCHHHHHHHHHHHHH
Q 014892 38 ESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF----A-PEGYLPQN-LYSLNSSY-------GSEHLLKALLHKMKQ 104 (416)
Q Consensus 38 ~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~----~-~~GY~~~d-~~~id~~~-------Gt~~d~~~Lv~~aH~ 104 (416)
...++|+++-..+.++-.++.|.++|=+-=..... + .-.|...+ .+.-.+.| =+.+++++|.+.|++
T Consensus 9 G~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~ 88 (327)
T TIGR03586 9 SANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKE 88 (327)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 34578999999999999999999987553211000 0 00111100 11101111 135788999999999
Q ss_pred CCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHH
Q 014892 105 HKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWL 184 (416)
Q Consensus 105 ~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w 184 (416)
.||.++-.. |+. +.+.+
T Consensus 89 ~Gi~~~stp-------------------------fd~-------------------------------------~svd~- 105 (327)
T TIGR03586 89 LGLTIFSSP-------------------------FDE-------------------------------------TAVDF- 105 (327)
T ss_pred hCCcEEEcc-------------------------CCH-------------------------------------HHHHH-
Confidence 999998632 110 11123
Q ss_pred HHhcCCCeEEecccCCCcHHHHHHHHHhcCCceE
Q 014892 185 RNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFS 218 (416)
Q Consensus 185 ~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~ 218 (416)
+.++|++.+-+=........+++.+.+.-+|.++
T Consensus 106 l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvil 139 (327)
T TIGR03586 106 LESLDVPAYKIASFEITDLPLIRYVAKTGKPIIM 139 (327)
T ss_pred HHHcCCCEEEECCccccCHHHHHHHHhcCCcEEE
Confidence 3478999999888887888888888887777543
No 239
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=45.39 E-value=1.2e+02 Score=29.66 Aligned_cols=71 Identities=8% Similarity=-0.055 Sum_probs=43.4
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
+..++.....++=|+..|..-....++...++. .. -.+... .-.+.+++|++++|++|-++++=+ +|.+..
T Consensus 37 ~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~-~~-~~~~~d-~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 37 NFHLIHYGTRAAGQVGLVIVEATAVLPEGRISD-KD-LGIWDD-EHIEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEECCeEECccccCCC-Cc-eecCCH-HHHHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 344455555566788888776655544322211 10 011100 125789999999999999998865 787764
No 240
>PRK09028 cystathionine beta-lyase; Provisional
Probab=45.05 E-value=28 Score=34.84 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
...|...+++++++.||++|+.||+|-++-
T Consensus 157 NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 157 SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 345888999999999999999999998874
No 241
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.03 E-value=86 Score=30.80 Aligned_cols=56 Identities=14% Similarity=-0.007 Sum_probs=39.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+-+.+.+-.+.|+.+++ .|.|.|.++.+. .+|.+ =+.++++++.+.+.++|+.|.+
T Consensus 269 s~e~a~~La~~l~~l~~-~VnLIPynp~~~-~~~~~----------ps~e~i~~f~~~L~~~Gi~vtv 324 (345)
T PRK14457 269 LPEHAEELANLLRGFQS-HVNLIPYNPIDE-VEFQR----------PSPKRIQAFQRVLEQRGVAVSV 324 (345)
T ss_pred CHHHHHHHHHHHhcCCC-eEEEecCCCCCC-CCCCC----------CCHHHHHHHHHHHHHCCCeEEE
Confidence 35555555667777775 788888777542 23321 2578999999999999999974
No 242
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.50 E-value=67 Score=30.11 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=37.3
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH-KVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~-Gi~Vil 111 (416)
+.+.++.++++|++.|+|.+-.. +++. .+.. +.++++++.+.+.++ |+.+.+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~----~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNP----RSWL-------SRPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC----CccC-------CCCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 77889999999999999975211 1111 1112 568899999999998 777765
No 243
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=44.02 E-value=41 Score=32.45 Aligned_cols=45 Identities=18% Similarity=0.286 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc----------HHHHHHHHHhcC
Q 014892 170 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS----------AKYVKEYIEGAR 214 (416)
Q Consensus 170 ~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~----------~~~~~~~~~~~~ 214 (416)
+++-|+.+++.+..+++++|+||+-+|--.... ..|++++.++++
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~ 150 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALK 150 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhc
Confidence 567799999999999999999999999754432 346666665543
No 244
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=44.01 E-value=56 Score=28.45 Aligned_cols=60 Identities=7% Similarity=-0.112 Sum_probs=40.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH---CCCEEEEEEccccC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ---HKVRAMADIVINHR 118 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~---~Gi~VilD~V~NH~ 118 (416)
..+..++...+.+++|+++|.+.|.+-.. .+ ++.+.+.+.++++.+ .++-||+...+-++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~~~------------~~---~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIGSL------------KE---GDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHHHH------------hC---CCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 38899999999999999999998754211 10 134444444444444 59999998776544
No 245
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.83 E-value=25 Score=26.07 Aligned_cols=57 Identities=19% Similarity=0.086 Sum_probs=34.2
Q ss_pred HHHc-CCCEEEeCCCCCCCCC--CCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 55 ISKS-GFTSVWLPPATHSFAP--EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 55 Lk~L-Gv~~I~L~Pi~~~~~~--~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
|..+ |++...+.|....... ..-...|..-+=+.-|..++..++++.|+++|+++|.
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 20 LLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 4666 8888776552211000 1112223222224557778899999999999999875
No 246
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.77 E-value=3.2e+02 Score=26.98 Aligned_cols=29 Identities=7% Similarity=-0.019 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.|++|++++|++|=++++=+ +|.+...
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~~ 105 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAMR 105 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCCc
Confidence 5789999999999999988865 8887743
No 247
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=43.60 E-value=56 Score=28.43 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHCC-CEEEEEEccccC
Q 014892 90 GSEHLLKALLHKMKQHK-VRAMADIVINHR 118 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~G-i~VilD~V~NH~ 118 (416)
++.+++.+.++.+++.| +.|...++++..
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 45799999999999999 899998888755
No 248
>PRK05939 hypothetical protein; Provisional
Probab=43.52 E-value=32 Score=34.46 Aligned_cols=84 Identities=8% Similarity=0.042 Sum_probs=50.0
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCC----CCCCCCcccccCCCCCCCCCCHHHHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATH----SFAPEGYLPQNLYSLNSSYGSEHLLKALL 99 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~----~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv 99 (416)
..+||.|+..-.. +-+-..-+..++.+|+..+++.+.-. ..-...=...-.-.+....|...++++++
T Consensus 83 l~~Gd~Vv~~~~~--------y~~t~~~~~~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~ 154 (397)
T PRK05939 83 LRAGDHLVSSQFL--------FGNTNSLFGTLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIG 154 (397)
T ss_pred cCCCCEEEECCCc--------cccHHHHHHHHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHH
Confidence 5667777665432 21222222346778998887755310 00001111111123445678899999999
Q ss_pred HHHHHCCCEEEEEEcc
Q 014892 100 HKMKQHKVRAMADIVI 115 (416)
Q Consensus 100 ~~aH~~Gi~VilD~V~ 115 (416)
+.||++|+.||+|-+.
T Consensus 155 ~la~~~gi~livD~t~ 170 (397)
T PRK05939 155 ALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHHHcCCEEEEECCc
Confidence 9999999999999865
No 249
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.33 E-value=76 Score=31.29 Aligned_cols=55 Identities=15% Similarity=0.093 Sum_probs=38.7
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+.+.+-.+.+++++ ..|.|.|..+.+. +.|.. -+.+.+.++.+.+.++||.|.+
T Consensus 277 ~ed~~~La~ll~~l~-~~VnLIPynp~~~-~ky~~----------ps~e~l~~f~~~L~~~gi~v~i 331 (356)
T PRK14455 277 VEHAEELADLLKGIK-CHVNLIPVNPVPE-RDYVR----------TPKEDIFAFEDTLKKNGVNCTI 331 (356)
T ss_pred HHHHHHHHHHHhcCC-CcEEEEecCcCCC-CCCcC----------CCHHHHHHHHHHHHHCCCcEEE
Confidence 445555556667776 4678888776542 23432 3578999999999999999975
No 250
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=43.33 E-value=77 Score=30.26 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=74.5
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCC---HHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS---EHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt---~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
=+-+-+...-||+-|+|++-+-===+. +.-.|.-.| .+....++ -.|.+-+|++|+++||.+|.-+|.=--..
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~-G~lty~s~d--~~~~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~- 151 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDY-GELTYPSSD--EINKYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI- 151 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCC-ccEeccccc--hhhhhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeee-
Confidence 344556677788888888765210000 112243333 22222232 35788999999999999999988632111
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCC-CCCCCC----CCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGN-GSTGDN----FHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
+ ..|++....-+.++..+ ...+.. .....=.+--+|.+++|=+.+++.-+ ++|+|-+.+|
T Consensus 152 -------l-------~~~n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~-~fGfdEiQFD 216 (400)
T COG1306 152 -------L-------AKENPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAA-KFGFDEIQFD 216 (400)
T ss_pred -------E-------EeecCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHH-HcCccceeee
Confidence 1 11222211111111100 000000 00111134457899999999999987 9999999999
Q ss_pred ccC
Q 014892 197 FAR 199 (416)
Q Consensus 197 ~a~ 199 (416)
-+.
T Consensus 217 YIR 219 (400)
T COG1306 217 YIR 219 (400)
T ss_pred EEE
Confidence 753
No 251
>PLN02814 beta-glucosidase
Probab=43.24 E-value=96 Score=32.22 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=42.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.--.+-++-+|+||+++-=++=-+..--+.|-. .+ .--..+=.++||++|.++||+.|+=+
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g-----~~--N~~Gl~fY~~lId~l~~~GI~P~VTL 137 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRG-----LI--NPKGLLFYKNLIKELRSHGIEPHVTL 137 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCC-----CC--CHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 57778889999999999987765333221122211 12 11234558999999999999999844
No 252
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=43.22 E-value=54 Score=32.78 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=44.0
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
.++|..|+++|||-|.|..= ..+..-...+. +.-+.++..+.++.|++.+..|-+|+++..-+..
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQ-------S~~d~~L~~lg-R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgqt 175 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQ-------SLKEDDLKKLG-RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQT 175 (390)
T ss_pred HHHHHHHHHCCCCEEEEECC-------cCCHHHHHHcC-CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCCC
Confidence 37778888888888877541 11111112233 3346788888899999999999999999876553
No 253
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=43.07 E-value=66 Score=31.19 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=39.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCE-EEEEEcc
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVR-AMADIVI 115 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~-VilD~V~ 115 (416)
+.++.|++.|++.|.++- ++.++.-|..+...-|+.++..+-++++.+.|+. |-+-+|+
T Consensus 103 ~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 103 RHAKDLKEAGLKRVNVSL-------DSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHcCCCeEEEec-------ccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 456666666776666543 3333333344443346889999999999999997 7776654
No 254
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=42.65 E-value=1.4e+02 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+.+ |++..+.+.-..++.++++
T Consensus 162 ~~y~~~~a~~l~-~~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 162 LNYYLSLVKELV-EMGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 678888888876 899999887 8888888887777776665
No 255
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=42.60 E-value=32 Score=36.82 Aligned_cols=59 Identities=8% Similarity=0.052 Sum_probs=41.3
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..+.+.|.-.|.+|+|+|-+.++.=+- ..-| ..+|+ .-|.. +++.|++.|+.|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG---------~fdf~-~~D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEG---------KFDFT-WLDEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcccc---------ccCcc-cchHH-HHHHHHhcCceEEEecCC
Confidence 678889999999999999997765331 0011 12233 33444 899999999999995443
No 256
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=42.13 E-value=97 Score=30.64 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=43.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.+.+++....||++|+..+-=.+.-+..+.++|.- + +.+.++.|-+.|++.||.++-++
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g-----~-----~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQG-----L-----GVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccC-----C-----CHHHHHHHHHHHHHcCCCEEEee
Confidence 477788888889999998777443333333333222 1 26899999999999999999876
No 257
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=41.86 E-value=2.1e+02 Score=27.14 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 175 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 175 ~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
+++.+.++... +.|+|-+++ |.+....+.-..++...++
T Consensus 147 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~P~~v~~l~~~l~ 186 (280)
T cd07945 147 DYVFQLVDFLS-DLPIKRIMLPDTLGILSPFETYTYISDMV 186 (280)
T ss_pred HHHHHHHHHHH-HcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 57888888887 899999887 7888888877777766664
No 258
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=41.76 E-value=46 Score=33.07 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=41.4
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
++|..|+++|||.|.|.-=. .+..-...++ +--+.++..+.++.+++.++.|-+|++++--+.
T Consensus 105 e~L~~l~~~GvnrislGvQS-------~~d~vL~~l~-R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgq 167 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGVQA-------LNDADLRFLG-RLHSVAEALAAIDLAREIFPRVSFDLIYARPGQ 167 (380)
T ss_pred HHHHHHHHcCCCEEEEeccc-------CCHHHHHHcC-CCCCHHHHHHHHHHHHHhCccEEEEeecCCCCC
Confidence 66777777777777764310 1111112233 223688889999999999999999999885544
No 259
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.62 E-value=57 Score=30.63 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.++-++++|+++|.|.+-- .+. .+.+.--+.++++++.+.+.++||+|..
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~----~~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDE----SDE-------RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCc----ccc-------chhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 6678888999999999995321 111 0111112577899999999999999864
No 260
>KOG2730 consensus Methylase [General function prediction only]
Probab=41.61 E-value=26 Score=31.96 Aligned_cols=43 Identities=14% Similarity=0.014 Sum_probs=35.3
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCC
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLN 86 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id 86 (416)
||+..+.++|.--|+. ++.+.++|.+-.++|.+|++.|.-...
T Consensus 150 GD~ld~~~~lq~~K~~-~~~vf~sppwggp~y~~~~~~DL~~~~ 192 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIK-YDCVFLSPPWGGPSYLRADVYDLETHL 192 (263)
T ss_pred chHHHHHHHHhhhhhe-eeeeecCCCCCCcchhhhhhhhhhhhc
Confidence 7999999999999999 999999998888777777766644433
No 261
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=41.51 E-value=60 Score=32.13 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=58.0
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCC----CCCCcccccCCCCCCC-----------------------------C
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSS-----------------------------Y 89 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~----~~~GY~~~d~~~id~~-----------------------------~ 89 (416)
|--++|.=.++-|+.-|-|.+.=-|=|+.. .++|-.+. +|++-|. =
T Consensus 134 GC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR-~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 134 GCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVR-YYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred cchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeE-eecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 778888888999999999987766655543 25554444 2332211 1
Q ss_pred C---CHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 90 G---SEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 90 G---t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
| |.+-|+++.+-||+.||-||.|=|+.|+.-..
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 2 35779999999999999999999999997644
No 262
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.44 E-value=51 Score=34.11 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=39.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
+.|+.+++.|++.|.+.- ++.+ ..-...++.. .+.++..+.|+.++++||.+..++++.-
T Consensus 288 ell~~l~~aG~~~v~iGi--ES~~-----~~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~ 347 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGT--EAAA-----QATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGF 347 (497)
T ss_pred HHHHHHHHhCCcEEEEcc--ccCC-----HHHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEEC
Confidence 455666667777666632 2211 1112234433 3688899999999999999999999863
No 263
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=41.41 E-value=34 Score=33.49 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=39.9
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
.+.|..||+.|++.+..+ +..=++..=+..|.|.=-+.++..+.++.||+.||+|..=+.+.|-
T Consensus 141 ~e~l~~LkeAGl~~i~~~------~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGT------AAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred HHHHHHHHHhCcccccCc------chhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 456667777777766410 0011111112234443236788899999999999999888888765
No 264
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=41.38 E-value=87 Score=31.55 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=46.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..+.+.+-..-|+++|||++-|.-+..... +-|-|+..| ..+++.|.+-....||||.|-+-+
T Consensus 181 n~qR~kDYAR~laSiGINg~v~NNVNvk~~-------e~~lit~~f--l~k~aklAdiFR~YGIK~yLsinf 243 (684)
T COG3661 181 NDQRMKDYARALASIGINGTVLNNVNVKKA-------ESYLITAPF--LAKAAKLADIFRPYGIKVYLSINF 243 (684)
T ss_pred chHHHHHHHHHHhhcCcceEEecccccchh-------hhheechHh--HHHHHHHHHHhhhccceEEEEecc
Confidence 456777777789999999999988765421 123344333 567899999999999999997643
No 265
>PRK04302 triosephosphate isomerase; Provisional
Probab=40.76 E-value=56 Score=29.76 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=31.3
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 52 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 52 LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
++.|+++|++.|-+ |-.+.. -..++..+++++|++.||.+|+++
T Consensus 78 ~~~l~~~G~~~vii-~~ser~-----------------~~~~e~~~~v~~a~~~Gl~~I~~v 121 (223)
T PRK04302 78 PEAVKDAGAVGTLI-NHSERR-----------------LTLADIEAVVERAKKLGLESVVCV 121 (223)
T ss_pred HHHHHHcCCCEEEE-eccccc-----------------cCHHHHHHHHHHHHHCCCeEEEEc
Confidence 77888888888843 322111 124558999999999999999743
No 266
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.69 E-value=44 Score=32.74 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=35.5
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 52 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 52 LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
...+++||.++|=++=.+.. -+.-.|+ --..+.+++++++||+.||-+|+.++.
T Consensus 112 ve~a~~~GAdAVk~lv~~~~--------d~~~~~~--~~~~~~l~rv~~ec~~~giPlllE~l~ 165 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYRP--------DEDDAIN--DRKHAFVERVGAECRANDIPFFLEPLT 165 (340)
T ss_pred HHHHHHcCCCEEEEEEEeCC--------CcchHHH--HHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 56799999998876532111 0000111 113467999999999999999998633
No 267
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=40.54 E-value=11 Score=33.33 Aligned_cols=45 Identities=11% Similarity=0.089 Sum_probs=34.2
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 52 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 52 LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
|..++++|++.|.|.+..... ... . .++++++.+.+.++||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~------~~~---~------~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQP------WDE---K------DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSH------HTH---H------HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcc------ccc---c------hHHHHHHHHHHHHcCCeEEE
Confidence 467899999999998754332 110 0 78899999999999999664
No 268
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.48 E-value=2.2e+02 Score=27.14 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
-+++.+.++... +.|+|.+++ |.+....+.-..++.+.++
T Consensus 154 ~~~~~~~~~~~~-~~G~d~i~l~DT~G~~~P~~v~~lv~~l~ 194 (287)
T PRK05692 154 PEAVADVAERLF-ALGCYEISLGDTIGVGTPGQVRAVLEAVL 194 (287)
T ss_pred HHHHHHHHHHHH-HcCCcEEEeccccCccCHHHHHHHHHHHH
Confidence 367888888887 899998887 7888888777777666654
No 269
>PRK13561 putative diguanylate cyclase; Provisional
Probab=40.40 E-value=44 Score=35.68 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=48.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCC------cccccCCCCCCCC-----CCHHHHHHHHHHHHHCCCEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEG------YLPQNLYSLNSSY-----GSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~G------Y~~~d~~~id~~~-----Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+.+.+.+.+..|+++||.--- -=+-...++-. .-+.|+-+||..| .+..-++.+++-||..||+||..
T Consensus 532 ~~~~~~~~~~~l~~~G~~i~l-ddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe 610 (651)
T PRK13561 532 DPHAAVAILRPLRNAGVRVAL-DDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE 610 (651)
T ss_pred CHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 678889999999999996443 11000001111 1356777777433 34567999999999999999998
Q ss_pred Eccc
Q 014892 113 IVIN 116 (416)
Q Consensus 113 ~V~N 116 (416)
.|=+
T Consensus 611 gVE~ 614 (651)
T PRK13561 611 GVET 614 (651)
T ss_pred cCCC
Confidence 7754
No 270
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.28 E-value=1.6e+02 Score=26.73 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+++ |.+..+.+.-..++.+.++
T Consensus 136 ~~~~~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 136 PEELLELAEALA-EAGADIIYLADTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHHHHHHHH-HHT-SEEEEEETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCeEEEeeCccCCcCHHHHHHHHHHHH
Confidence 356777777776 889999987 6788888887777777665
No 271
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.14 E-value=14 Score=32.31 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+++++++||+.||++|+++-|-
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhc
Confidence 5789999999999999998773
No 272
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=39.91 E-value=1.4e+02 Score=28.66 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=72.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~--Gi~VilD~V~NH~~~~ 121 (416)
.++.+.+.+..+.++|+.+|-|-|+-+.....|=. +.+|. |- ..+-|+++++. .|-||.|+.+......
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~-----A~~~~-g~---v~~air~iK~~~p~l~vi~DvcLc~YT~h 119 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSE-----AYDPD-GI---VQRAIRAIKEAVPELVVITDVCLCEYTDH 119 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCccc-----ccCCC-Ch---HHHHHHHHHHhCCCcEEEEeeeccCCCCC
Confidence 58999999999999999999999993322222211 11111 22 33444444443 8999999988643321
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
. + |..- -+=...|.+..+.+.+.+.-.. +.|+|-. +...|
T Consensus 120 G-----------------H-----------------cGil--~~~~idND~Tl~~L~k~Als~A-~AGADiV---APSdM 159 (314)
T cd00384 120 G-----------------H-----------------CGIL--KDDYVDNDATLELLAKIAVSHA-EAGADIV---APSDM 159 (314)
T ss_pred C-----------------c-----------------ceec--cCCcCccHHHHHHHHHHHHHHH-HcCCCee---ecccc
Confidence 0 0 0000 0002457788888888888776 8888754 33444
Q ss_pred cHHHHHHHHHhc
Q 014892 202 SAKYVKEYIEGA 213 (416)
Q Consensus 202 ~~~~~~~~~~~~ 213 (416)
-..-...+++++
T Consensus 160 MDGrV~aIR~aL 171 (314)
T cd00384 160 MDGRVAAIREAL 171 (314)
T ss_pred cccHHHHHHHHH
Confidence 444555555554
No 273
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=39.53 E-value=1.7e+02 Score=27.66 Aligned_cols=72 Identities=8% Similarity=0.145 Sum_probs=49.4
Q ss_pred CceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCC-CCHHHHHHHHHHHHHC
Q 014892 27 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSY-GSEHLLKALLHKMKQH 105 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~-Gt~~d~~~Lv~~aH~~ 105 (416)
+..+++|++.-+ .+...+....+++.|+++|.|+=- ++...+. ...+ ++++.+.++++++++.
T Consensus 89 ~~p~ivsi~g~~------~~~~~~~a~~~~~~G~d~iElN~~--cP~~~~~--------g~~~~~~~~~~~eiv~~vr~~ 152 (296)
T cd04740 89 GTPVIASIAGST------VEEFVEVAEKLADAGADAIELNIS--CPNVKGG--------GMAFGTDPEAVAEIVKAVKKA 152 (296)
T ss_pred CCcEEEEEecCC------HHHHHHHHHHHHHcCCCEEEEECC--CCCCCCC--------cccccCCHHHHHHHHHHHHhc
Confidence 456889988644 677778888889999999999621 2211111 2223 4567888889998887
Q ss_pred -CCEEEEEEc
Q 014892 106 -KVRAMADIV 114 (416)
Q Consensus 106 -Gi~VilD~V 114 (416)
++-|++-+-
T Consensus 153 ~~~Pv~vKl~ 162 (296)
T cd04740 153 TDVPVIVKLT 162 (296)
T ss_pred cCCCEEEEeC
Confidence 777777654
No 274
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=39.51 E-value=37 Score=32.83 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFA 198 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a 198 (416)
.+++.|+.+++.+..|++++|.||+-+|--
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDwE 134 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDWE 134 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECCc
Confidence 468889999999999999999999999953
No 275
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=39.46 E-value=21 Score=33.91 Aligned_cols=26 Identities=15% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 89 YGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.|...+++++++.||++|+.||+|-+
T Consensus 166 ~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 166 YGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCEecCHHHHHHHHHhcCCeEEEECc
Confidence 58888999999999999999999987
No 276
>PRK10060 RNase II stability modulator; Provisional
Probab=39.20 E-value=34 Score=36.75 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=48.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCcccccCCCCCCCC--------CCHHHHHHHHHHHHHCCCEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSY--------GSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~---~~~GY~~~d~~~id~~~--------Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+...+.+.+..|+++||..-. -=+-... ++-.--+.|+-+||..| ....-++.++.-||+.||+||.+
T Consensus 539 ~~~~~~~~l~~L~~~G~~ial-DdfGtg~ssl~~L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 539 NEELALSVIQQFSQLGAQVHL-DDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred CHHHHHHHHHHHHHCCCEEEE-ECCCCchhhHHHHHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 578888999999999985432 1110000 11122267777887433 33566899999999999999998
Q ss_pred Eccc
Q 014892 113 IVIN 116 (416)
Q Consensus 113 ~V~N 116 (416)
.|=+
T Consensus 618 GVEt 621 (663)
T PRK10060 618 GVET 621 (663)
T ss_pred cCCC
Confidence 8755
No 277
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.18 E-value=47 Score=26.73 Aligned_cols=58 Identities=12% Similarity=-0.068 Sum_probs=35.3
Q ss_pred hhHHHcC-CCEEEeCCCCCCC-CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 53 PDISKSG-FTSVWLPPATHSF-APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 53 dyLk~LG-v~~I~L~Pi~~~~-~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+|..+| +.+....| .+.. ....-...|..-+=+.-|...+..+.++.|+++|.+||.
T Consensus 19 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 19 YLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 3566776 66665542 1111 011122333222335668888999999999999999986
No 278
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=38.94 E-value=1.2e+02 Score=29.77 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=41.7
Q ss_pred cHHHHHhhhhhHHHcC----CCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSG----FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LG----v~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+...+.+-.++++.++ +..|.|.|.++.+.. ..+|-. =+.++++++.+.+.++|+.|.+
T Consensus 262 s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~----~~~~~~-----ps~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 262 SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT----PFKFQS-----SSAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred CHHHHHHHHHHHhhccccCCcceEEEecCCCCCCC----CccCCC-----CCHHHHHHHHHHHHHCCCcEEE
Confidence 4566667777778774 578999998876431 111111 2588999999999999999875
No 279
>PRK12928 lipoyl synthase; Provisional
Probab=38.93 E-value=1.5e+02 Score=28.31 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=53.2
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMK 103 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH 103 (416)
+....++|+ +| .. +.+.+.+.|+.|+++|++.|.+.|..... ...+-+ .+|=++++|+.+-+.|.
T Consensus 204 i~~~s~iIv-G~-GE-----T~ed~~etl~~Lrel~~d~v~i~~Yl~p~-~~~~~v-------~~~~~~~~f~~~~~~~~ 268 (290)
T PRK12928 204 IPTKSGLML-GL-GE-----TEDEVIETLRDLRAVGCDRLTIGQYLRPS-LAHLPV-------QRYWTPEEFEALGQIAR 268 (290)
T ss_pred ceecccEEE-eC-CC-----CHHHHHHHHHHHHhcCCCEEEEEcCCCCC-ccCCce-------eeccCHHHHHHHHHHHH
Confidence 444444555 34 45 79999999999999999999988754432 122222 35668999999999999
Q ss_pred HCCCEEEE
Q 014892 104 QHKVRAMA 111 (416)
Q Consensus 104 ~~Gi~Vil 111 (416)
+.|.+-|.
T Consensus 269 ~~g~~~~~ 276 (290)
T PRK12928 269 ELGFSHVR 276 (290)
T ss_pred HcCCceeE
Confidence 99987665
No 280
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=38.89 E-value=82 Score=30.47 Aligned_cols=59 Identities=10% Similarity=0.183 Sum_probs=40.0
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEcc
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVI 115 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi-~VilD~V~ 115 (416)
.+.++.|++.|++.|.++- ++.++.-|..+... ++.+++.+-++.|.+.|+ .|.+-.|+
T Consensus 108 ~~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 108 ARRAAALKDAGLDRVNVSL-------DSLDPERFKAITGR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHHcCCCEEEEEe-------ccCCHHHhccCCCC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 4556667777777766544 33344334445433 678999999999999998 77776655
No 281
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=38.86 E-value=71 Score=31.80 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCC----------CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~----------~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
+..+..-+..++..|+..+++.+- +... .......-...+....|...+++++.+.||++|+.|++|.+
T Consensus 102 h~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a 180 (402)
T TIGR02006 102 HKAVLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAA 180 (402)
T ss_pred cHHHHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcc
Confidence 444555555677789988887432 2110 11122222334555679999999999999999999999998
Q ss_pred c
Q 014892 115 I 115 (416)
Q Consensus 115 ~ 115 (416)
-
T Consensus 181 ~ 181 (402)
T TIGR02006 181 Q 181 (402)
T ss_pred h
Confidence 4
No 282
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.84 E-value=1.6e+02 Score=28.80 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+.|++|++++|++|-++++= ++|.+...
T Consensus 76 i~~lr~la~~vh~~ga~~~~Q--L~H~G~~~ 104 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQ--LWHVGRVS 104 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEE--cccCccCC
Confidence 467999999999999999984 57887743
No 283
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=38.84 E-value=42 Score=33.35 Aligned_cols=32 Identities=13% Similarity=-0.028 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+....|...+++++++.||++|+.||+|-+.-
T Consensus 144 p~Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 144 PSSITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 33456889999999999999999999998864
No 284
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=38.83 E-value=74 Score=30.86 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=40.9
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEcc
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV-RAMADIVI 115 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi-~VilD~V~ 115 (416)
.+.++.|++.|++.|-++ -++.++.-|-.+.. -|+.+...+.+++|.+.|+ .|-+..|+
T Consensus 104 ~~~~~~L~~aGl~~v~IS-------lDs~~~e~~~~i~~-~g~~~~vl~~i~~~~~~Gi~~v~in~v~ 163 (329)
T PRK13361 104 ARFAAELADAGLKRLNIS-------LDTLRPELFAALTR-NGRLERVIAGIDAAKAAGFERIKLNAVI 163 (329)
T ss_pred HHHHHHHHHcCCCeEEEE-------eccCCHHHhhhhcC-CCCHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 356667777777776652 23444444444543 4788999999999999999 78887765
No 285
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=38.76 E-value=43 Score=33.06 Aligned_cols=70 Identities=11% Similarity=0.071 Sum_probs=42.0
Q ss_pred HHHhhhhh-HHHcCCCEEEeCCCCCCC--C--CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 47 NLERKVPD-ISKSGFTSVWLPPATHSF--A--PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 47 gi~~~Ldy-Lk~LGv~~I~L~Pi~~~~--~--~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
|-...+.+ ||.+||++.+.-|.-+.. . ...=-..-.-.|...-++.-|+.++.+-||++|+-+|+|=.+-
T Consensus 113 GT~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~a 187 (426)
T COG2873 113 GTYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFA 187 (426)
T ss_pred chHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCC
Confidence 34444555 599999999987754211 0 0000000001222233445689999999999999999996543
No 286
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=38.76 E-value=29 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=23.0
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFA 73 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~ 73 (416)
.+.+.|+.|++.|++.|.+.|++...+
T Consensus 46 ~i~~~l~~l~~~g~~~vvvvPl~~~~g 72 (101)
T cd03409 46 DTEEAIRELAEEGYQRVVIVPLAPVSG 72 (101)
T ss_pred CHHHHHHHHHHcCCCeEEEEeCccccC
Confidence 367788889999999999999998743
No 287
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.70 E-value=72 Score=27.43 Aligned_cols=49 Identities=8% Similarity=0.173 Sum_probs=39.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
|+.-+.+-..-|+++||. |+ ..|-+..=+++.+.++++++.++|++||+
T Consensus 10 D~~~~~~a~~~L~~~gi~---------------~d----v~V~SaHRtp~~~~~~~~~a~~~g~~viI 58 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIP---------------YE----LRVVSAHRTPELMLEYAKEAEERGIKVII 58 (156)
T ss_pred hHHHHHHHHHHHHHcCCC---------------eE----EEEECcccCHHHHHHHHHHHHHCCCeEEE
Confidence 788788888889999996 22 23444555899999999999999999886
No 288
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=38.67 E-value=37 Score=32.75 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc---c--CCCc------HHHHHHHHHhcC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDF---A--RGYS------AKYVKEYIEGAR 214 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~---a--~~~~------~~~~~~~~~~~~ 214 (416)
.+|+.|+.+++.+..+++++|.||+-+|. . ...+ ..|+++++++++
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~ 144 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLH 144 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHh
Confidence 46888999999999889999999999993 1 1112 246777777665
No 289
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=38.53 E-value=62 Score=29.99 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=33.7
Q ss_pred HHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 46 RNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 46 ~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
..+.+.|+.++++|++.|.|.| .++.+.+ .++.++|.+.+.++|+.+..
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~-------~~~~~~~----------~~~~~~l~~~l~~~gl~i~~ 63 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP-------GDLFPAD----------YKELAELKELLADYGLEITS 63 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC-------cccCCch----------hhhHHHHHHHHHHcCcEEEe
Confidence 4477889999999999999998 1222221 11166666777777877765
No 290
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=38.35 E-value=40 Score=32.89 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
|.-.+.++..+.++.||+.||+|..-+++.|
T Consensus 175 ~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl 205 (340)
T TIGR03699 175 PKKISSEEWLEVMETAHKLGLPTTATMMFGH 205 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEeeC
Confidence 4446888999999999999999999999987
No 291
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.06 E-value=1.7e+02 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++++.++... +.|+|.+++ |.+..+.+.-..++...++
T Consensus 148 ~~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (274)
T cd07938 148 PERVAEVAERLL-DLGCDEISLGDTIGVATPAQVRRLLEAVL 188 (274)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCccCHHHHHHHHHHHH
Confidence 467888888886 899999987 7788888887777777665
No 292
>PLN02849 beta-glucosidase
Probab=38.03 E-value=1.4e+02 Score=30.95 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=42.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.-..+-++-+|+||+++-=++=-+..--+.|-. .++ --..+=.++||++|+++||+.|+=+
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g-----~vN--~~gl~fY~~lid~l~~~GI~P~VTL 139 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRG-----SVN--PKGLQFYKNFIQELVKHGIEPHVTL 139 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCC-----CCC--HHHHHHHHHHHHHHHHcCCeEEEee
Confidence 67778899999999999987765322211112211 121 1234458999999999999999854
No 293
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=37.97 E-value=41 Score=31.43 Aligned_cols=22 Identities=9% Similarity=0.380 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 014892 92 EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+++++|++.||+.||.|++.+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 5779999999999999999987
No 294
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=37.82 E-value=53 Score=30.61 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=51.5
Q ss_pred eeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcc--------cccCCCCCCCC--------CCH
Q 014892 29 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYL--------PQNLYSLNSSY--------GSE 92 (416)
Q Consensus 29 ~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~--------~~d~~~id~~~--------Gt~ 92 (416)
.+++.+-.... -.+..-+...+..|+++||.. .|== . .-||. +.|+-+||..| ...
T Consensus 121 ~l~lEitE~~~--~~~~~~~~~~l~~L~~~G~~i-alDD---F--GtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~ 192 (256)
T COG2200 121 RLVLEITESAL--IDDLDTALALLRQLRELGVRI-ALDD---F--GTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQ 192 (256)
T ss_pred eEEEEEeCchh--hcCHHHHHHHHHHHHHCCCeE-EEEC---C--CCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchH
Confidence 44555544332 124667888999999999743 2211 1 22333 45666677544 223
Q ss_pred HHHHHHHHHHHHCCCEEEEEEccc
Q 014892 93 HLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 93 ~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
.=++.+|+-||+.||+||...|=+
T Consensus 193 ~iv~~iv~la~~l~~~vvaEGVEt 216 (256)
T COG2200 193 AIVRAIVALAHKLGLTVVAEGVET 216 (256)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCC
Confidence 569999999999999999987644
No 295
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=37.80 E-value=97 Score=30.85 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=42.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
|++.+.+.++ + .+-+|.+-|++...+ . + ..+.+.+++|++-|+++|+-+|+|=|.-+.+.
T Consensus 173 d~~~l~~~l~---~-~~aaiiiep~~~~gg---~-------~---~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 173 DLAAVKAVID---D-HTCAVVVEPIQGEGG---V-------I---PATPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHhc---C-CeEEEEEecccCCCC---C-------c---cCCHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 6666665553 1 366788888765432 1 0 12578899999999999999999999776544
No 296
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=37.45 E-value=39 Score=32.37 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc-------HHHHHHHHHhcC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS-------AKYVKEYIEGAR 214 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~-------~~~~~~~~~~~~ 214 (416)
.+|+.|+.+++.+..+++++|.||+-+|--.... ..|+++++++++
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~ 140 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVK 140 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHH
Confidence 4788899999999988999999999999543221 236777776654
No 297
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.27 E-value=70 Score=27.75 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=37.7
Q ss_pred hhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 53 PDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 53 dyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
..|..+|+++..+...... .-...|..-+=+.-|...+..++++.||++|++||.
T Consensus 50 ~~l~~~g~~~~~~~~~~~~----~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 50 MRLMHLGFNVYVVGETTTP----SIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHhCCCeEEEeCCcccC----CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3477899999988654311 112222222225558889999999999999999987
No 298
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=36.94 E-value=74 Score=29.27 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHhhhhhHHHcC-CCEEEeCCCCCCCCCCCccccc--CCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 014892 47 NLERKVPDISKSG-FTSVWLPPATHSFAPEGYLPQN--LYSLNSSYGSEHLLKALLHKMKQHKVRAM 110 (416)
Q Consensus 47 gi~~~LdyLk~LG-v~~I~L~Pi~~~~~~~GY~~~d--~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vi 110 (416)
.|.+-+..|++++ +..|.|+|.++.+. +.|...+ |-..+-.--+.++++++.+.+.+.|++|+
T Consensus 180 ei~~l~~~l~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 180 SAHRLGEFIKDMGNIEKIELLPYHELGK-HKWEAMGEEYKLDGVKPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred HHHHHHHHHHhcCCcceEEEecCCccch-hHHHHcCCcccccCCCCCCHHHHHHHHHHHHHcCCccc
Confidence 3444444445554 56777777666532 1121110 11111122458999999999999999874
No 299
>PF09196 DUF1953: Domain of unknown function (DUF1953); InterPro: IPR015279 This domain is found in the Archaeal protein maltooligosyl trehalose synthase produced by Sulfolobus spp. Its function has not, as yet, been defined. ; PDB: 3HJE_A 1IV8_A.
Probab=36.93 E-value=74 Score=22.09 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=29.2
Q ss_pred eEEEEecCCEEEEEECCEEEEEEcC-CCCCC-----CCCCcEEeeeCCce
Q 014892 368 IKILEAQSNLYSAIIGDKVCMKIGD-GSWCP-----AGKEWTLATSGHKY 411 (416)
Q Consensus 368 ~~~~~~~~~~~~~~R~~~~lvvinn-~~~~~-----~~~~~~~~ls~~~~ 411 (416)
+..+...+++..|.|.++++|.+-. ++.+. .++.+++++.|.+-
T Consensus 2 yk~l~l~~glcgf~r~~kilviiktkgs~n~~~~~e~~~~ytdv~t~e~i 51 (66)
T PF09196_consen 2 YKGLDLEEGLCGFIRFNKILVIIKTKGSVNYKYKIEEGAIYTDVITGEEI 51 (66)
T ss_dssp EEEE---TTEEEEEETTTEEEEEES-TTSSCEEEEECCEEEEETTTTEEE
T ss_pred CcccchhhcceeEEecCEEEEEEecccccceeeeeccCcEEEeeecChhe
Confidence 4455667889999998888888776 44332 35678888887654
No 300
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=36.83 E-value=77 Score=32.31 Aligned_cols=63 Identities=10% Similarity=0.014 Sum_probs=39.8
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK-VRAMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~G-i~VilD~V~NH~~~ 120 (416)
++|..++++|||.|.|.- ... +..-...++ +--+.++..+.++.+++.| +.|.+|+++..-+.
T Consensus 164 e~l~~l~~aGvnRiSiGV-QSf------~d~vLk~lg-R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 164 EKADAALDAGANRFSIGV-QSF------NTQVRRRAG-RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHcCCCEEEecC-CcC------CHHHHHHhC-CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 456666666666665532 111 111111222 2236788999999999999 89999999986655
No 301
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=36.77 E-value=2.2e+02 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCCeEE-ecccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFR-FDFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfR-lD~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.++ .|.+....+.-..++.+.++
T Consensus 150 ~~~~~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~lv~~l~ 190 (273)
T cd07941 150 PEYALATLKAAA-EAGADWLVLCDTNGGTLPHEIAEIVKEVR 190 (273)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 356777777776 78999988 48888888887777777665
No 302
>PLN02591 tryptophan synthase
Probab=36.53 E-value=92 Score=29.07 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
|+.+-+..+++.|+++|-+.. + ..|+...++++|+++||..|+
T Consensus 94 G~~~F~~~~~~aGv~GviipD-----------------L-----P~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPD-----------------L-----PLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCC-----------------C-----CHHHHHHHHHHHHHcCCeEEE
Confidence 777778888888888887762 1 248899999999999999998
No 303
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.41 E-value=2.6e+02 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 175 KDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 175 ~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
+++.+.++... +.|+|.+++ |++..+.+.-..++...++
T Consensus 141 ~~l~~~~~~~~-~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~ 180 (262)
T cd07948 141 VDLLRVYRAVD-KLGVNRVGIADTVGIATPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHHH-HcCCCEEEECCcCCCCCHHHHHHHHHHHH
Confidence 34666666665 889998876 7778888887777776665
No 304
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=36.35 E-value=44 Score=32.33 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCc--------HHHHHHHHHhcC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGYS--------AKYVKEYIEGAR 214 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~--------~~~~~~~~~~~~ 214 (416)
.+++.|+.+++.+..|++++|.||+-+|--..-. ..|++++.++++
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~ 140 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALD 140 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999543221 236666666553
No 305
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.32 E-value=1.3e+02 Score=28.24 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=42.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCC-CCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAP-EGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~-~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.+.+.+....||++|+..+-. -.++..+. ++|.- +| .+.++.|.+.|++.||.++-++
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~-~~~kpRTs~~s~~G---------~g-~~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRG-GAFKPRTSPYSFQG---------LG-EEGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-eeecCCCCCCccCC---------cH-HHHHHHHHHHHHHcCCCEEEee
Confidence 6888999999999999984443 34442221 22221 12 8899999999999999999876
No 306
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=36.16 E-value=70 Score=33.27 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=24.9
Q ss_pred cCCCeEEecccCCC------c----------------HHHHHHHHHhcCC-ceEEEcccC
Q 014892 188 VGFQDFRFDFARGY------S----------------AKYVKEYIEGARP-IFSVGEYWD 224 (416)
Q Consensus 188 ~gvDGfRlD~a~~~------~----------------~~~~~~~~~~~~~-~~~vgE~~~ 224 (416)
..+|++|+|.+..+ | .++++.+..+... ..+|||-..
T Consensus 303 ~~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~~~vIaEDLG 362 (513)
T TIGR00217 303 QYADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDNLKIIGEDLG 362 (513)
T ss_pred HhCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCCCcEEeeeCC
Confidence 46788999987553 2 3566666666654 567999543
No 307
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=35.98 E-value=1.1e+02 Score=29.93 Aligned_cols=117 Identities=14% Similarity=0.167 Sum_probs=78.7
Q ss_pred CCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCC----CC-CC-Cccccc------CCCCCCCCC-CHHHHHHHHHHHHHC
Q 014892 39 SCKHDWWRNLERKVPDISKSGFTSVWLPPATHS----FA-PE-GYLPQN------LYSLNSSYG-SEHLLKALLHKMKQH 105 (416)
Q Consensus 39 ~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~----~~-~~-GY~~~d------~~~id~~~G-t~~d~~~Lv~~aH~~ 105 (416)
..+.||++-..+.++-.++.|.++|=+--.... +. .. .|...+ +|.+=..+. +.++++.|.+.|++.
T Consensus 9 ~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~ 88 (329)
T TIGR03569 9 VNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESK 88 (329)
T ss_pred CCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 457799999999999999999999977542110 01 11 232222 111111111 368999999999999
Q ss_pred CCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHH
Q 014892 106 KVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLR 185 (416)
Q Consensus 106 Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~ 185 (416)
||.++-.. |+ .+.+.+.
T Consensus 89 Gi~~~stp-------------------------fd-------------------------------------~~svd~l- 105 (329)
T TIGR03569 89 GIEFLSTP-------------------------FD-------------------------------------LESADFL- 105 (329)
T ss_pred CCcEEEEe-------------------------CC-------------------------------------HHHHHHH-
Confidence 99988622 11 1122233
Q ss_pred HhcCCCeEEecccCCCcHHHHHHHHHhcCCceE
Q 014892 186 NTVGFQDFRFDFARGYSAKYVKEYIEGARPIFS 218 (416)
Q Consensus 186 ~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~ 218 (416)
+++|+|.+.+=+.......+++.+.+.-+|.++
T Consensus 106 ~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvil 138 (329)
T TIGR03569 106 EDLGVPRFKIPSGEITNAPLLKKIARFGKPVIL 138 (329)
T ss_pred HhcCCCEEEECcccccCHHHHHHHHhcCCcEEE
Confidence 488999999988888888999999888887543
No 308
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=35.83 E-value=66 Score=28.12 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=29.3
Q ss_pred hhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 52 VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 52 LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+..+.++|++.|-++|+|++.+--++.+. +.+.|+++.+.+. +.|+.
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~----------g~~~l~~~~~~~~---~pv~A 154 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPL----------GLDGLREIARASP---IPVYA 154 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTC----------HHHHHHHHHHHTS---SCEEE
T ss_pred HHHhhhcCCCEEEECCccCCCCCcccccc----------CHHHHHHHHHhCC---CCEEE
Confidence 55667899999999999998754343333 2556666665553 55554
No 309
>PLN02998 beta-glucosidase
Probab=35.63 E-value=1.3e+02 Score=31.28 Aligned_cols=63 Identities=11% Similarity=0.223 Sum_probs=40.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+.-..+-++-+|+||+++-=++=-+..--+.|-. .++ --..+=.++||+++.++||+.|+=+
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g-----~vN--~~gl~~Y~~lid~L~~~GIeP~VTL 142 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRG-----PIN--PKGLQYYNNLIDELITHGIQPHVTL 142 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCC-----CcC--HHHHHHHHHHHHHHHHcCCceEEEe
Confidence 56667788999999999986654222111111210 121 1234558999999999999999844
No 310
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=35.39 E-value=76 Score=28.51 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=47.5
Q ss_pred eeecCCCCCCcHHHHHhhhhhHHHcCCC-EEEeCCCCCCCCCCC----cccccCCCCCCCCCCH----------HHHHHH
Q 014892 34 GFNWESCKHDWWRNLERKVPDISKSGFT-SVWLPPATHSFAPEG----YLPQNLYSLNSSYGSE----------HLLKAL 98 (416)
Q Consensus 34 ~f~~~~~~~G~~~gi~~~LdyLk~LGv~-~I~L~Pi~~~~~~~G----Y~~~d~~~id~~~Gt~----------~d~~~L 98 (416)
.|+.. ..+.+.+.+.+||++|+. +|-|.|=.+-...-. =+..-...++|.||+. ++++++
T Consensus 85 ~~H~E-----~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~ 159 (201)
T PF00834_consen 85 TFHAE-----ATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKL 159 (201)
T ss_dssp EEEGG-----GTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHH
T ss_pred EEccc-----chhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHH
Confidence 45555 344567789999999999 788888654432212 2334456788999862 344445
Q ss_pred HHHHHHCCCEEEEEEccc
Q 014892 99 LHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 99 v~~aH~~Gi~VilD~V~N 116 (416)
.++.+ .++.+.+|.=+|
T Consensus 160 ~~~~~-~~~~I~vDGGI~ 176 (201)
T PF00834_consen 160 IPENG-LDFEIEVDGGIN 176 (201)
T ss_dssp HHHHT-CGSEEEEESSES
T ss_pred HHhcC-CceEEEEECCCC
Confidence 44433 678888887655
No 311
>PRK11059 regulatory protein CsrD; Provisional
Probab=35.37 E-value=47 Score=35.53 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=55.3
Q ss_pred ceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC---CCCCcccccCCCCCCCCC--------CHHHHH
Q 014892 28 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF---APEGYLPQNLYSLNSSYG--------SEHLLK 96 (416)
Q Consensus 28 ~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~---~~~GY~~~d~~~id~~~G--------t~~d~~ 96 (416)
+..++.+=..... .+...+...+..|+++||.... -=+-... .+-.--+.||-+||+.|- +..-++
T Consensus 517 ~~l~~Ei~E~~~~--~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid~s~v~~i~~~~~~~~~v~ 593 (640)
T PRK11059 517 KRLIFELAEADVC--QHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLHPSLVRNIHKRTENQLFVR 593 (640)
T ss_pred ceEEEEEechhhh--cCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEECHHHHhhhhcCchhHHHHH
Confidence 3555555443222 2588899999999999996443 2111111 122233577777775442 233489
Q ss_pred HHHHHHHHCCCEEEEEEccc
Q 014892 97 ALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~N 116 (416)
.+++.||..||+||...|=+
T Consensus 594 sli~~a~~~~i~viAegVEt 613 (640)
T PRK11059 594 SLVGACAGTETQVFATGVES 613 (640)
T ss_pred HHHHHHHHCCCeEEEEEeCC
Confidence 99999999999999988765
No 312
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=35.21 E-value=5.8e+02 Score=27.17 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|-+++ |++..+.+.-..++.++++
T Consensus 154 ~~~~~~~a~~l~-~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk 194 (593)
T PRK14040 154 LQTWVDLAKQLE-DMGVDSLCIKDMAGLLKPYAAYELVSRIK 194 (593)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 678888888876 899998886 8888888877666666554
No 313
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=35.15 E-value=29 Score=31.34 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=47.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCcccccCCCCCCCCC--------CHHHHHHHHHHHHHCCCEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSYG--------SEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~---~~GY~~~d~~~id~~~G--------t~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+...+.+.+..|+++|+. |+|-=+-.... .-..-+.|+-++|+.+- ...-++.+++.||..|++||++
T Consensus 131 ~~~~~~~~i~~l~~~G~~-ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 131 DDESAVATLQRLRELGVR-IALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred ChHHHHHHHHHHHHCCCE-EEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 455566889999999996 45533211111 11122456667775442 2356999999999999999998
Q ss_pred Eccc
Q 014892 113 IVIN 116 (416)
Q Consensus 113 ~V~N 116 (416)
.|=+
T Consensus 210 gVe~ 213 (241)
T smart00052 210 GVET 213 (241)
T ss_pred cCCC
Confidence 7765
No 314
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=35.08 E-value=39 Score=32.25 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
+.+++++|++.||++|+.||+|-+...
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~ 176 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAE 176 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhh
Confidence 368899999999999999999998753
No 315
>PRK07050 cystathionine beta-lyase; Provisional
Probab=35.04 E-value=49 Score=33.08 Aligned_cols=30 Identities=10% Similarity=-0.066 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
..|...+++++++.||++|+.||+|-.+..
T Consensus 162 p~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 162 VTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred CCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 357899999999999999999999999764
No 316
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=35.01 E-value=29 Score=29.10 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=28.1
Q ss_pred HHhcC-CCeeEEecCCcCCC-chhHHHHHHHHHHHHHhCcccC
Q 014892 324 YILMH-PGIPSVFYDHFYDW-GDSIHNQIVKLMDVRRQQDIHS 364 (416)
Q Consensus 324 ~llt~-pGiP~Iy~G~E~gw-~~~l~~~~~~Li~lR~~~~~l~ 364 (416)
+++-. ||||+|.-|+.+.- ..++.++++.|-+.-+..|-+.
T Consensus 81 ~i~pYPPGIPll~pGE~it~~~~~~i~yl~~l~~~~~~fpGf~ 123 (136)
T PF03711_consen 81 FIVPYPPGIPLLVPGERITEETEEIIDYLLALQEFGAHFPGFE 123 (136)
T ss_dssp -BEECTTTS-SB-TTEEB-STTHHHHHHHHHHHHHHTCSTTS-
T ss_pred eeeecCCCCcEECCccccccchHHHHHHHHHHHHhCCcCcCCC
Confidence 44445 59999999999854 3578888888888888877653
No 317
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=34.97 E-value=33 Score=27.19 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=34.4
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCC-CcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAM 110 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~-GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vi 110 (416)
+.+-++.++..|++.|+|.|++-..+.| .-|+-. . ..+.++..+++ +|++|-
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipg-----e---~~~SW~~~l~~---~g~~v~ 96 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAG-----D---EPDSWKSILEA---AGIKVE 96 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhheecccchhcCCC-----C---CchhHHHHHHH---CCCeeE
Confidence 5666667899999999999999887666 222221 0 13445555544 488875
No 318
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=34.87 E-value=48 Score=33.87 Aligned_cols=57 Identities=5% Similarity=0.207 Sum_probs=39.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCC--CCC-----HHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS--YGS-----EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~--~Gt-----~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
-+.--.+-++-+|+||+|+.=++--+ -.|-|. -|. .+=.++||+++.++||+.|+-+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W-------------~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISW-------------SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--H-------------HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred chhhhhHHHHHHHhhccceeeeecch-------------hheeecccccccCHhHhhhhHHHHHHHHhhccceeeee
Confidence 56778888999999999998765422 222222 122 4558999999999999999865
No 319
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=34.86 E-value=1.6e+02 Score=28.25 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=57.1
Q ss_pred hhHHHcCCCEEEeCCCCCCCC---CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcc
Q 014892 53 PDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKY 129 (416)
Q Consensus 53 dyLk~LGv~~I~L~Pi~~~~~---~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~ 129 (416)
.+.++-|+++|-|.=+..... .|+ .. ....+...+++-|++++++|.+||+=+ +.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~----g~----~~~~~~~~~~~~i~~lk~~G~kViiS~-----GG--------- 76 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWG----GS----YPLDQGGWIKSDIAALRAAGGDVIVSF-----GG--------- 76 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCC----CC----CCcccchhHHHHHHHHHHcCCeEEEEe-----cC---------
Confidence 567788999998863322211 121 00 111246778889999999999999822 11
Q ss_pred cccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014892 130 NRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARG 200 (416)
Q Consensus 130 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~ 200 (416)
|.... +.. +..-++.+++.+...++.||+||+-||-=..
T Consensus 77 ---------~~g~~-------------------~~~----~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~ 115 (294)
T cd06543 77 ---------ASGTP-------------------LAT----SCTSADQLAAAYQKVIDAYGLTHLDFDIEGG 115 (294)
T ss_pred ---------CCCCc-------------------ccc----CcccHHHHHHHHHHHHHHhCCCeEEEeccCC
Confidence 00000 000 1223677777777778899999999996443
No 320
>PLN02509 cystathionine beta-lyase
Probab=34.82 E-value=52 Score=33.74 Aligned_cols=31 Identities=6% Similarity=0.016 Sum_probs=27.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+....|...+++++++.||++|+.||+|-.+
T Consensus 226 PsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 226 PTNPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3445688999999999999999999999873
No 321
>PRK09989 hypothetical protein; Provisional
Probab=34.78 E-value=90 Score=28.90 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+.+.++.++++|+++|.|.-. .++ + .+++.+.+.++||+|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~------~~~-------------~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFP------YDY-------------S---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCc------ccC-------------C---HHHHHHHHHHcCCcEEE
Confidence 3678899999999999999421 111 1 34555567789999874
No 322
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=34.73 E-value=43 Score=33.05 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=45.4
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCC------------------CCCCcccccCCCCC-----------------C
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSF------------------APEGYLPQNLYSLN-----------------S 87 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~------------------~~~GY~~~d~~~id-----------------~ 87 (416)
|=..||...+.-|-+-|=..|-.+|++..- .+++| -.||-+++ -
T Consensus 91 ~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y-~iD~~~LE~~~~~~~vkl~iLCnPHN 169 (388)
T COG1168 91 GVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRY-EIDFDALEKAFVDERVKLFILCNPHN 169 (388)
T ss_pred cchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcE-EecHHHHHHHHhcCCccEEEEeCCCC
Confidence 446667777777777776666667776431 12333 22332222 2
Q ss_pred CCC---CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 88 SYG---SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 88 ~~G---t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.-| |.++|..|.+-|.++|++||-|=
T Consensus 170 P~Grvwt~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 170 PTGRVWTKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred CCCccccHHHHHHHHHHHHHcCCEEEeec
Confidence 234 47999999999999999999764
No 323
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.56 E-value=1.5e+02 Score=29.44 Aligned_cols=56 Identities=7% Similarity=-0.021 Sum_probs=40.1
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.+.+-.+.++.+++ .|.|.|.++.+. .+| .. =+.++++++.+.+.++|+.|.+
T Consensus 276 s~e~a~~La~ll~~l~~-~VnLIPYN~~~~-~~~-----~~-----ps~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 276 GTEHAHQLAELLKDTPC-KINLIPWNPFPG-APY-----GR-----SSNSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred CHHHHHHHHHHHhcCCc-eEEEecCCCCCC-CCC-----CC-----CCHHHHHHHHHHHHHCCCeEEE
Confidence 45556666667788875 899999876542 122 11 2578899999999999999975
No 324
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=34.56 E-value=45 Score=32.16 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
..+.+.+|++.|+++|.+|++|.
T Consensus 144 ~~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 144 PPDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEC
Confidence 36789999999999999999996
No 325
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.42 E-value=42 Score=27.03 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=35.6
Q ss_pred hHHH-cCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 54 DISK-SGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 54 yLk~-LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
++.. +|+..+...+..... .-...|..-+=+.-|...+..+.++.|+++|++||.
T Consensus 20 ~l~~~~~~~~~~~~~~~~~~---~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 20 LLLDEAKIPVYVVKDYTLPA---FVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHhccCCCEEEecCccCcC---CCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4555 488888765522110 111222222336678899999999999999999985
No 326
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=34.28 E-value=33 Score=34.26 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 84 SLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 84 ~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.+...-|...+++++++.||++|+.|++|.+
T Consensus 179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred ccccccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 4556678889999999999999999999975
No 327
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=34.18 E-value=41 Score=32.51 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+.++++++++.|+++|+.||+|-++-..
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 170 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDF 170 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECccccc
Confidence 3788999999999999999999987533
No 328
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.02 E-value=2.9e+02 Score=27.21 Aligned_cols=40 Identities=13% Similarity=0.055 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++++.++..+ +.|+|-+++ |.+....+.-..++.+.++
T Consensus 196 ~~~l~~~~~~~~-~~Gad~I~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 196 PSKVAYVAKELY-DMGCYEISLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred HHHHHHHHHHHH-HcCCCEEEecCCcCCcCHHHHHHHHHHHH
Confidence 467888888887 899998887 8888888777777666654
No 329
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=33.98 E-value=34 Score=33.43 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 86 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 86 d~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+...|+..+++++++.||++|+.||+|-+.-
T Consensus 149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 3467889999999999999999999999864
No 330
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=33.58 E-value=84 Score=31.40 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=43.7
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
++|..|+++|||.|.|.-= + .++.-+-.++. --+.++..+.++.+++.+..|-+|++++--+.
T Consensus 123 e~L~~l~~~GvnrisiGvQ--S-----~~~~~L~~l~R-~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGIQ--S-----FNDAHLKALGR-IHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHcCCCeEEEecc--c-----CCHHHHHHhCC-CCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 7788889999998887531 1 11111222322 23567888899999999999999999986665
No 331
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=33.45 E-value=37 Score=32.70 Aligned_cols=28 Identities=18% Similarity=0.043 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
.-|...+++++++.||++|+.||+|-+.
T Consensus 144 ~tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 144 MDGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred CCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 3467778999999999999999999984
No 332
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=33.43 E-value=37 Score=33.46 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..|...+++++++.||++|+.||+|-++
T Consensus 137 p~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 137 PTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 3577778999999999999999999974
No 333
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=33.28 E-value=43 Score=33.22 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+....|+..+++++++.||++|+.||+|-+.-
T Consensus 167 ~~~~tG~~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 167 VDGNYGNLADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 44568999999999999999999999999743
No 334
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=33.28 E-value=48 Score=32.53 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-----c------HHHHHHHHHhcC
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY-----S------AKYVKEYIEGAR 214 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~-----~------~~~~~~~~~~~~ 214 (416)
.+++.|+.+++.+..|++++|.||+-+|--... + ..|+++++++++
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~ 148 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFE 148 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999943211 1 235667766654
No 335
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=33.24 E-value=4.6e+02 Score=25.39 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=73.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEccc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVIN 116 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-----~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~--Gi~VilD~V~N 116 (416)
.++.+.+.+..+.++|+++|-|-|+.+.. +...|++. |- +.+-|+++++. .|-||.|+.+-
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~---------g~---v~~air~iK~~~p~l~vi~DVclc 119 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPD---------NL---VCRAIRAIKEAFPELGIITDVALD 119 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCC---------Ch---HHHHHHHHHHhCCCcEEEEeeecc
Confidence 58999999999999999999999995432 11222221 11 34444444443 89999999886
Q ss_pred cCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 117 HRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 117 H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
...... | |... -+=...|.+..+.+.+...-.. +.|+|-.
T Consensus 120 ~YT~hG-----------------H-----------------cGil--~~~~idND~Tl~~L~~~Avs~A-~AGADiV--- 159 (320)
T cd04823 120 PYTSHG-----------------H-----------------DGIV--RDGGILNDETVEVLCKQALVQA-EAGADIV--- 159 (320)
T ss_pred CCCCCC-----------------c-----------------ceec--cCCcCcCHHHHHHHHHHHHHHH-HhCCCEE---
Confidence 433310 0 0000 0012467888888888888886 8888754
Q ss_pred ccCCCcHHHHHHHHHhc
Q 014892 197 FARGYSAKYVKEYIEGA 213 (416)
Q Consensus 197 ~a~~~~~~~~~~~~~~~ 213 (416)
+...|-..-...+++++
T Consensus 160 APSdMMDGrV~aIR~aL 176 (320)
T cd04823 160 APSDMMDGRIGAIREAL 176 (320)
T ss_pred EcccchhhHHHHHHHHH
Confidence 33445555555555554
No 336
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.18 E-value=1.7e+02 Score=27.12 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=41.2
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYG-SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~G-t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.++-+.+.++.-+.||+..|-+.|... ||... -+..+- ..+-+++|++.|.++||++.+.-
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 355666778889999999998877533 22211 000010 12458999999999999999983
No 337
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=33.17 E-value=5.5e+02 Score=26.26 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
-+++.+.++... +.|+|-+++ |++..+.+.-..++..+++
T Consensus 153 ~~~~~~~a~~l~-~~Gad~I~i~Dt~G~l~P~~v~~lv~alk 193 (448)
T PRK12331 153 IDYFVKLAKEMQ-EMGADSICIKDMAGILTPYVAYELVKRIK 193 (448)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 456777777776 899999987 7888888777666666654
No 338
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=33.09 E-value=66 Score=30.92 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
|.--+.++..+.++.||+.||++..=+.+.|-
T Consensus 139 ~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 139 PNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 33337788899999999999999999998875
No 339
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=33.03 E-value=59 Score=32.04 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 89 YGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
.|+..+++++++.||++|+.||.|-++
T Consensus 149 ~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 149 LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 688999999999999999999999876
No 340
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=32.98 E-value=1.5e+02 Score=30.97 Aligned_cols=95 Identities=8% Similarity=-0.049 Sum_probs=53.6
Q ss_pred eeccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCC-CCCCCCcccccCCCCCCCCCCHHHHHHHHHH
Q 014892 23 VIRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATH-SFAPEGYLPQNLYSLNSSYGSEHLLKALLHK 101 (416)
Q Consensus 23 ~~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~-~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~ 101 (416)
+.+..+++..-.|+-.+ -+=|.+.|++.++..|+.||.-..|===+. ...++-=+.-|++.-...|++ .+..||++
T Consensus 287 ~~~kprPi~~nsWea~Y-fd~t~e~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPs--giE~li~~ 363 (687)
T COG3345 287 RVKKPRPIGWNSWEAYY-FDFTEEEILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPS--GIEELIEA 363 (687)
T ss_pred ccCCCCcceeeceeeee-ecCCHHHHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecchhhccc--cHHHHHHH
Confidence 44444455444433221 122688999999999999987666522111 111222224455544455543 36788999
Q ss_pred HHHCCCEEEEEEccccCcC
Q 014892 102 MKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 102 aH~~Gi~VilD~V~NH~~~ 120 (416)
.|++|+.-=+=+-+-=++.
T Consensus 364 I~e~Gl~fGIWlePemvs~ 382 (687)
T COG3345 364 IAENGLIFGIWLEPEMVSE 382 (687)
T ss_pred HHHcCCccceeecchhccc
Confidence 9999997655443333333
No 341
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=32.92 E-value=1.8e+02 Score=27.96 Aligned_cols=61 Identities=13% Similarity=0.144 Sum_probs=40.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.+.+.+..+++.|++.|=+.--....... + ...-..=+.+++++++++||++|+.|.+
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~-----~--~~~~~~~~~e~l~~~~~~A~~~g~~v~~ 178 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPG-----D--PPPDTQFSEEELRAIVDEAHKAGLYVAA 178 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCC-----C--CCcccCcCHHHHHHHHHHHHHcCCEEEE
Confidence 46778888998999999998654311110011 1 0111122578999999999999999887
No 342
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=32.83 E-value=5.6e+02 Score=27.70 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=70.3
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHH-HHHHHHHHHHC-CCEEEEEEccccCcCCC
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHL-LKALLHKMKQH-KVRAMADIVINHRVGTT 122 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d-~~~Lv~~aH~~-Gi~VilD~V~NH~~~~~ 122 (416)
-+.+-.-|+.|++||+|+|+|-.+....++ |=. .-.|=.+.++==.+| |-+.+=+++.| |++|..=+-.=-..-
T Consensus 333 ~~nl~~l~~ri~~~~~~~VyLqafadp~gd-g~~-~~lYFpnr~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l-- 408 (672)
T PRK14581 333 KENLDKLVQRISDLRVTHVFLQAFSDPKGD-GNI-RQVYFPNRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDM-- 408 (672)
T ss_pred hhhHHHHHHHHHhcCCCEEEEEeeeCCCCC-Cce-eeEEecCCcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccC--
Confidence 445556678899999999999887655433 311 112223334444455 45554666655 999986332210000
Q ss_pred CCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 123 QGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 123 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
+...+. ...+.+. .+.. ...-...+-|.--+|++|+.|.++..-+.....+||+=|.
T Consensus 409 ~~~~~~-------~~~~~~~------~~~~----~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~Gilfh 465 (672)
T PRK14581 409 DPSLPR-------ITRIDPK------TGKT----SIDPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYH 465 (672)
T ss_pred Ccccch-------hhhcccc------cCcc----ccCCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 000000 0011100 0000 0000123346667899999999999999855689997653
No 343
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=32.81 E-value=1.1e+02 Score=29.65 Aligned_cols=52 Identities=10% Similarity=0.097 Sum_probs=32.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ 104 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~ 104 (416)
+.+.|.+-+++++++||+.|.+.|.++... ++. ...+=+.++.+++.+++-+
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~----a~~-----~~~~l~~~e~~~~~~~~~~ 227 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGYAYEK----APD-----QDHFLGRRQTKKLFREVLS 227 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCccccc----ccc-----cccccCHHHHHHHHHHHHh
Confidence 577788888888888888888888765421 110 1122245677777666544
No 344
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=32.76 E-value=54 Score=30.74 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.+++++|++.||+.||.+|+|+
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEe
Confidence 35799999999999999999998
No 345
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.70 E-value=1.1e+02 Score=28.65 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=35.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
|+.+-+..+++.|++++.++ | + ..++.+.++++|.++||..|+=+.++
T Consensus 105 G~e~f~~~~~~aGvdGviip--------------D-------L-p~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIP--------------D-------L-PPEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred CHHHHHHHHHHcCCcEEEEC--------------C-------C-CHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 66677777777777777773 1 1 14899999999999999999544444
No 346
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=32.69 E-value=48 Score=35.44 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=49.6
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCc---ccccCCCCCCCC-----CCHHHHHHHHHHHHHCCCEEEE
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGY---LPQNLYSLNSSY-----GSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~---~~GY---~~~d~~~id~~~-----Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+...+.+.+..|+++||. |.|-=+-...+ +-.- -+.|+-+||..| ++..-++.++.-||..||+||.
T Consensus 536 ~~~~~~~~~~~~l~~~G~~-ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~via 614 (660)
T PRK11829 536 QDLDEALRLLRELQGLGLL-IALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVMA 614 (660)
T ss_pred cCHHHHHHHHHHHHhCCCE-EEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 3678889999999999997 44422211111 2223 556777777433 3455678888899999999999
Q ss_pred EEccc
Q 014892 112 DIVIN 116 (416)
Q Consensus 112 D~V~N 116 (416)
..|=+
T Consensus 615 egVEt 619 (660)
T PRK11829 615 EGVET 619 (660)
T ss_pred ecCCC
Confidence 87755
No 347
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=32.63 E-value=1e+02 Score=28.05 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 42 HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 42 ~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+|-...++.++.+...|+++|-+.|+... .+..++++|.+.||.||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~----------------------~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDPD----------------------SLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSSTT----------------------TTHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCHH----------------------HHHHHHHHHhhcCceEEE
Confidence 346677777777777888888887775433 355778899999999998
No 348
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=32.56 E-value=40 Score=33.27 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 89 YGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
.|...|++++++.||++|+.||+|-.+
T Consensus 149 tg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 149 LMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 467779999999999999999999985
No 349
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=32.50 E-value=99 Score=21.38 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=17.0
Q ss_pred CCEEEEEEcCCCCCC---CCCCcEEeeeC-----------CceEEeeC
Q 014892 383 GDKVCMKIGDGSWCP---AGKEWTLATSG-----------HKYAVWHK 416 (416)
Q Consensus 383 ~~~~lvvinn~~~~~---~~~~~~~~ls~-----------~~~~~~~~ 416 (416)
+.+.+.++|.++... -...++++++| ++.+||++
T Consensus 11 ~~~y~F~~N~s~~~~~v~l~~~~~dll~g~~~~~~~~L~p~~v~Vl~~ 58 (58)
T PF08533_consen 11 GGRYLFLLNFSDEPQTVTLPESYTDLLTGETVSGGLTLPPYGVRVLKE 58 (58)
T ss_dssp ETTEEEEEE-SSS-EE----TT-EEEES-------SEE-TTEEEEEE-
T ss_pred CCEEEEEEECCCCCEEEEcCCCceecccCcceeeEEEECCCEEEEEEC
Confidence 456888888876431 12345555555 56666654
No 350
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=32.03 E-value=66 Score=30.72 Aligned_cols=16 Identities=6% Similarity=0.104 Sum_probs=14.8
Q ss_pred HHHHHHHHHCCCEEEE
Q 014892 96 KALLHKMKQHKVRAMA 111 (416)
Q Consensus 96 ~~Lv~~aH~~Gi~Vil 111 (416)
.++|++||++|++|..
T Consensus 246 ~~~v~~a~~~Gl~v~~ 261 (296)
T cd08559 246 TDLVKDAHKAGLLVHP 261 (296)
T ss_pred hHHHHHHHHcCCEEEE
Confidence 6899999999999987
No 351
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=31.97 E-value=1.6e+02 Score=27.77 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=47.7
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCC-------------CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSF-------------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-------------~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+.+.+.++.|+++|++.|-++=---.. ...|+.+.=+...-. =+..++++.+..+++.||+=||
T Consensus 14 ~~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~--~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIG--ATREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecC--CCHHHHHHHHHHHHHCCCCEEE
Confidence 6889999999999999999985321111 135777664444332 2788999999999999999555
No 352
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=31.85 E-value=61 Score=33.20 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
++++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58999999999999999999997
No 353
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.82 E-value=2.9e+02 Score=27.28 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhc
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGA 213 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~ 213 (416)
.+++.+.++... +.|+|.+++ |.+..+.+.-..++...+
T Consensus 141 ~~~l~~~~~~~~-~~Ga~~i~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 141 PDFLVELAEVAA-EAGADRFRFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred HHHHHHHHHHHH-HcCcCEEEEcccCCCCCHHHHHHHHHHH
Confidence 356777777765 788888776 667777776655555544
No 354
>PLN02651 cysteine desulfurase
Probab=31.78 E-value=42 Score=32.85 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCC----------CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~----------~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
...-+..++..|+..+.+. +-+... .......-...+....|...+++++++.||++|+.+++|.+-
T Consensus 101 ~~~~~~~~~~~g~~v~~v~-~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 101 VLDSCRHLQQEGFEVTYLP-VKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHHhcCCEEEEEc-cCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 3333445667898877763 321110 011222223344566788999999999999999999999874
No 355
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.48 E-value=67 Score=26.43 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=41.0
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCC---------CcccccCC--CC-CCCCCCHHHHHHHHHHHHH
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPE---------GYLPQNLY--SL-NSSYGSEHLLKALLHKMKQ 104 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~---------GY~~~d~~--~i-d~~~Gt~~d~~~Lv~~aH~ 104 (416)
...+.+.|+.|.+.|++.|.+.|.+-.++-+ .|. ..+- .+ .|-+.+.+|+.++++++++
T Consensus 55 ~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 55 VDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 4567888999999999999999999776422 111 1111 22 2555668888888888764
No 356
>PRK05968 hypothetical protein; Provisional
Probab=31.21 E-value=65 Score=32.09 Aligned_cols=85 Identities=20% Similarity=0.110 Sum_probs=47.7
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC--C-CCCcccccCCCCCCCCCCHHHHHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF--A-PEGYLPQNLYSLNSSYGSEHLLKALLH 100 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~-~~GY~~~d~~~id~~~Gt~~d~~~Lv~ 100 (416)
+.+||.++...... .+++.-+. ..++..|++.+++.+.-... . -..-...-.-.+....+...+++++.+
T Consensus 99 ~~~Gd~Vl~~~~~y----~~t~~~~~---~~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt~~~~~~~dl~~i~~ 171 (389)
T PRK05968 99 VEPGDRIVAVRHVY----PDAFRLFE---TILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPTSWVFELQDVAALAA 171 (389)
T ss_pred hCCCCEEEEeCCCc----hHHHHHHH---HHHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCCCCCCcHHHHHHHHH
Confidence 56777776654321 11222221 24667788877764320000 0 000011101122345677899999999
Q ss_pred HHHHCCCEEEEEEcc
Q 014892 101 KMKQHKVRAMADIVI 115 (416)
Q Consensus 101 ~aH~~Gi~VilD~V~ 115 (416)
.||++|+.||+|-.+
T Consensus 172 la~~~gi~vivD~a~ 186 (389)
T PRK05968 172 LAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999864
No 357
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.06 E-value=55 Score=26.43 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=38.6
Q ss_pred HHHhh-hhhHHHcCCCEEEeCCCCCCCCCC-CcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 47 NLERK-VPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 47 gi~~~-LdyLk~LGv~~I~L~Pi~~~~~~~-GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+... ..+++.+|....-+.......... .-.+.|..-+=+.-|..++..++++.|+++|+++|+
T Consensus 26 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 26 LVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred HHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34433 345778888666554422211111 112233333336667788999999999999999976
No 358
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=30.95 E-value=94 Score=30.48 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=51.3
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCC-CCCcccccCCC---CCCCCCCHHHHHHHHHHHHHCCCEEE-EEEccccCcCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFA-PEGYLPQNLYS---LNSSYGSEHLLKALLHKMKQHKVRAM-ADIVINHRVGT 121 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~-~~GY~~~d~~~---id~~~Gt~~d~~~Lv~~aH~~Gi~Vi-lD~V~NH~~~~ 121 (416)
-+.--+--|..||-+.-|-++++.... ..|=-.-|.|- =||.++ .++|.+|++++++.||+-| -|+|++-..-+
T Consensus 21 KL~Tt~aAL~~LG~d~r~~T~v~~~g~~~~g~l~G~L~i~G~GDP~L~-~~~L~~la~~l~~~Gi~~i~G~v~~D~s~f~ 99 (345)
T TIGR00666 21 KVITAAAALLQLGPQFRFTTTVETKGNVENGNLKGNLVLRFGGDPTLK-RQDIRNLVATLKKSGVKQIDGNVLVDTSAFS 99 (345)
T ss_pred HHHHHHHHHHhcCCCCceeeEEEecCcccCCcccccEEEEeecCCCcC-HHHHHHHHHHHHHcCCcEEEeeEEEEccccc
Confidence 356666778899999999998886642 11111113332 268888 4679999999999999876 47888654443
Q ss_pred C
Q 014892 122 T 122 (416)
Q Consensus 122 ~ 122 (416)
.
T Consensus 100 ~ 100 (345)
T TIGR00666 100 S 100 (345)
T ss_pred C
Confidence 3
No 359
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=30.76 E-value=42 Score=27.99 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 90 GSEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
|...++++|++.||++|+.+|+|-...-..
T Consensus 106 g~~~~~~~l~~~~~~~~~~li~D~a~~~~~ 135 (170)
T cd01494 106 GVLVPLKEIRKIAKEYGILLLVDAASAGGA 135 (170)
T ss_pred CeEcCHHHHHHHHHHcCCEEEEeccccccc
Confidence 444456899999999999999997665333
No 360
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=30.69 E-value=56 Score=32.70 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
+.++|+++++-|.++|+-||.|-|+.+...+.
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 47999999999999999999999999887754
No 361
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=30.66 E-value=2.2e+02 Score=26.27 Aligned_cols=67 Identities=9% Similarity=0.014 Sum_probs=50.0
Q ss_pred CCCCCCcHHHHHhhhhhHHHcCCCEEE-eCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 38 ESCKHDWWRNLERKVPDISKSGFTSVW-LPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 38 ~~~~~G~~~gi~~~LdyLk~LGv~~I~-L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
|++..-+++.+.+-.+||.+.||-... +.|.+..+. .++ +-++-...+|.+.++.+.++|=.|+|=.
T Consensus 8 DVsP~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~-~~~--------~~~l~~~~~f~~~L~~~~~~Gg~I~lHG 75 (243)
T PF10096_consen 8 DVSPFSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPN-GGI--------TVNLSDNPEFVEYLRYLQARGGEIVLHG 75 (243)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEecccCCC-Ccc--------cccchhhHHHHHHHHHHHhcCCEEEEEe
Confidence 344455899999999999999998544 367777653 222 3344557789999999999999999843
No 362
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=30.56 E-value=2.9e+02 Score=26.26 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=48.2
Q ss_pred CceeEEEeeecCCCCCCcHHHHHhhhhhHHHcC-CCEEEeCCCCCCCCCC-CcccccCCCCCCCCCCHHHHHHHHHHHHH
Q 014892 27 GREILFQGFNWESCKHDWWRNLERKVPDISKSG-FTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQ 104 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LG-v~~I~L~Pi~~~~~~~-GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~ 104 (416)
+..++.|+..-+ -+...+-...+++.| +++|.|+=-.++. .+ |+... .+.+.+.+++++.++
T Consensus 91 ~~p~i~si~g~~------~~~~~~~a~~~~~aG~~D~iElN~~cP~~-~~gg~~~~---------~~~~~~~eiv~~vr~ 154 (301)
T PRK07259 91 DTPIIANVAGST------EEEYAEVAEKLSKAPNVDAIELNISCPNV-KHGGMAFG---------TDPELAYEVVKAVKE 154 (301)
T ss_pred CCcEEEEeccCC------HHHHHHHHHHHhccCCcCEEEEECCCCCC-CCCccccc---------cCHHHHHHHHHHHHH
Confidence 446788887543 677777778889999 9999994322222 23 33221 256788888888887
Q ss_pred C-CCEEEEEEc
Q 014892 105 H-KVRAMADIV 114 (416)
Q Consensus 105 ~-Gi~VilD~V 114 (416)
. ++-|++-+.
T Consensus 155 ~~~~pv~vKl~ 165 (301)
T PRK07259 155 VVKVPVIVKLT 165 (301)
T ss_pred hcCCCEEEEcC
Confidence 6 666766654
No 363
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=30.55 E-value=2.2e+02 Score=27.50 Aligned_cols=121 Identities=10% Similarity=0.030 Sum_probs=71.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQ--HKVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~--~Gi~VilD~V~NH~~~~ 121 (416)
.++.+.+.+..+.++|+++|-|-|+-+.....|= .+.+|. |- +.+-|+++++ -.|-||.|+.+..-...
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs-----~A~~~~-g~---v~rair~iK~~~p~l~vi~DVcLc~YT~h 127 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPELKDEDGS-----EAYNPD-GL---VQRAIRAIKKAFPELGVITDVCLDEYTSH 127 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccc-----cccCCC-CH---HHHHHHHHHHhCCCcEEEEeeeccCCCCC
Confidence 5899999999999999999999999221111121 112221 22 3333333333 48999999988643321
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
. |.. +. . +=...|.+..+.+.+...-.. +.|+|-. +...|
T Consensus 128 G-----------------HcG-il---------------~---~g~idND~Tl~~L~~~Al~~A-~AGaDiV---APSdM 167 (323)
T PRK09283 128 G-----------------HCG-IL---------------E---DGYVDNDETLELLAKQALSQA-EAGADIV---APSDM 167 (323)
T ss_pred C-----------------cee-cc---------------c---CCcCcCHHHHHHHHHHHHHHH-HhCCCEE---Ecccc
Confidence 0 000 00 0 012347888888888888886 8888754 33444
Q ss_pred cHHHHHHHHHhc
Q 014892 202 SAKYVKEYIEGA 213 (416)
Q Consensus 202 ~~~~~~~~~~~~ 213 (416)
-..-...+++++
T Consensus 168 MDGrV~aIR~aL 179 (323)
T PRK09283 168 MDGRVGAIREAL 179 (323)
T ss_pred cccHHHHHHHHH
Confidence 444555555554
No 364
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=30.54 E-value=1.2e+02 Score=29.12 Aligned_cols=56 Identities=13% Similarity=0.252 Sum_probs=45.6
Q ss_pred HHHHHhhhhhHHHcCCC-EEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 45 WRNLERKVPDISKSGFT-SVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~-~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
.+.=++.|..|++.|+. +|.+.||.+.. +.+++.+++++|.+.|.+.+.+.++.=.
T Consensus 168 p~~Ri~al~~l~eaGi~~~v~v~PIiP~~------------------~d~e~e~~l~~~~~ag~~~v~~~~l~~~ 224 (297)
T COG1533 168 PEERLEALKELSEAGIPVGLFVAPIIPGL------------------NDEELERILEAAAEAGARVVVYGTLRLR 224 (297)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEecccCCC------------------ChHHHHHHHHHHHHcCCCeeEeeeeecc
Confidence 56677778889999996 57789998873 2389999999999999999998776533
No 365
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=30.54 E-value=57 Score=31.94 Aligned_cols=46 Identities=11% Similarity=0.102 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCC-------C----c------HHHHHHHHHhcCC
Q 014892 170 QHFVRKDIIAWLRWLRNTVGFQDFRFDFARG-------Y----S------AKYVKEYIEGARP 215 (416)
Q Consensus 170 ~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~-------~----~------~~~~~~~~~~~~~ 215 (416)
+++.|+.+++.+..+++.+|.||+-+|--.. + + ..|++++++++++
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~ 150 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS 150 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc
Confidence 6888999999999899999999999996521 1 1 2367777777664
No 366
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=30.51 E-value=18 Score=36.38 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
..+|..-|++.+++.||++|+.|++|=
T Consensus 178 TY~Gv~~di~~I~~~~h~~~~~llvDE 204 (417)
T PF01276_consen 178 TYYGVCYDIKEIAEICHKHGIPLLVDE 204 (417)
T ss_dssp -TTSEEE-HHHHHHHHCCTECEEEEE-
T ss_pred CCCeEEECHHHHHHHhcccCCEEEEEc
Confidence 456888999999999999999999985
No 367
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=30.35 E-value=90 Score=27.08 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=30.8
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
||+-.+..++..= .. ++.|.++|++-.++|.+=. -|++...+. +-.+.+|++.+.+.--.|++=+
T Consensus 55 gD~~~~~~~~~~~-~~-~D~vFlSPPWGGp~Y~~~~---~fdL~~~~~-p~~~~~l~~~~~~~t~nv~l~L 119 (163)
T PF09445_consen 55 GDFFELLKRLKSN-KI-FDVVFLSPPWGGPSYSKKD---VFDLEKSMQ-PFNLEDLLKAARKITPNVVLFL 119 (163)
T ss_dssp S-HHHHGGGB--------SEEEE---BSSGGGGGSS---SB-TTTSSS-S--HHHHHHHHHHH-S-EEEEE
T ss_pred CCHHHHHhhcccc-cc-ccEEEECCCCCCccccccC---ccCHHHccC-CCCHHHHHHHHHhhCCCEEEEe
Confidence 5666655554321 12 8999999999887765533 344433333 2346667777766666666633
No 368
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=30.35 E-value=80 Score=32.17 Aligned_cols=77 Identities=8% Similarity=0.078 Sum_probs=49.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCC-cccc----------------c--CCCCC-CCCCCHHHHHHHHHHHH
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEG-YLPQ----------------N--LYSLN-SSYGSEHLLKALLHKMK 103 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~G-Y~~~----------------d--~~~id-~~~Gt~~d~~~Lv~~aH 103 (416)
=-.||+.-|.-+..||+.+.-+.-..-..+..+ +.+. | ...+. --+++.+.+..+++.++
T Consensus 15 ggaGi~aDi~t~~alg~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~~~q~~a~~~d~~~~~ik~G~l~~~e~~~~i~~~~k 94 (448)
T PRK08573 15 GGAGIEADLKTFAALGVHGAVAITSVTAQNTYEVRAIHDLPPEVVAAQIEAVWEDMGIDAAKTGMLSNREIIEAVAKTVS 94 (448)
T ss_pred CHHHHHHHHHHHHHcCCeecccceEEEeecCCCceEEEECCHHHHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHHHHH
Confidence 367999999999999997766544332221111 0000 0 00111 12557889999999999
Q ss_pred HCCCEEEEEEccccCcC
Q 014892 104 QHKVRAMADIVINHRVG 120 (416)
Q Consensus 104 ~~Gi~VilD~V~NH~~~ 120 (416)
++|++|++|-|+-..+.
T Consensus 95 ~~g~~vv~DPv~~~~sG 111 (448)
T PRK08573 95 KYGFPLVVDPVMIAKSG 111 (448)
T ss_pred HcCCCEEEcCccccCCC
Confidence 99999999988765443
No 369
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.27 E-value=59 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEEcc
Q 014892 93 HLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 93 ~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+||+-|.+.|++.|++|++=++|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P 58 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP 58 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHcCCceEEEecC
Confidence 68999999999999999984443
No 370
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=30.15 E-value=4.4e+02 Score=25.74 Aligned_cols=71 Identities=13% Similarity=0.000 Sum_probs=42.0
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTT 122 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~ 122 (416)
.+++.....++=|+-.|..-.+.-++...++ +.. -.+... .-.+.+++|++++|++|-++++=+ +|.+...
T Consensus 34 ~~~~~y~~rA~gG~glii~~~~~v~~~~~~~-~~~-~~~~~~-~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~~ 104 (353)
T cd02930 34 RLAAFYAERARGGVGLIVTGGFAPNEAGKLG-PGG-PVLNSP-RQAAGHRLITDAVHAEGGKIALQI--LHAGRYA 104 (353)
T ss_pred HHHHHHHHHhcCCceEEEEeeEEeCCcccCC-CCC-cccCCH-HHHHHHHHHHHHHHHcCCEEEeec--cCCCCCC
Confidence 3444444455567777777655444332222 110 111100 236789999999999999999865 6887743
No 371
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.14 E-value=3.2e+02 Score=25.75 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=48.7
Q ss_pred CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCccc--ccCCCCCCCCCCHHHHHHHHHHHHHCCCE--EEE
Q 014892 42 HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLP--QNLYSLNSSYGSEHLLKALLHKMKQHKVR--AMA 111 (416)
Q Consensus 42 ~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~--~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~--Vil 111 (416)
+.+++...+-+.-|.+-|++.|+|.=+|..|-++|=-+ ..-.+++... |.++.-+|++++.+.+.+ ++|
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~-t~~~~lel~~~~r~~~~~~Pivl 99 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGV-TLEDTLELVEEIRAKGVKVPIVL 99 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCCCCEEE
Confidence 34799999999999999999999987777665655332 2223344333 467788899999877655 555
No 372
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.07 E-value=44 Score=33.95 Aligned_cols=83 Identities=11% Similarity=0.023 Sum_probs=49.5
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhh-hHHHcCCCEEEeC-CCCCCC---C--CCCcccccCCCCCCCCCCHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLP-PATHSF---A--PEGYLPQNLYSLNSSYGSEHLLK 96 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~Ld-yLk~LGv~~I~L~-Pi~~~~---~--~~GY~~~d~~~id~~~Gt~~d~~ 96 (416)
..+||.|+..... +.+....+. .++..|+..+++. |. .-. . ...-...-.-.+....|...|++
T Consensus 105 l~~Gd~Vv~~~~~--------y~~t~~~~~~~l~~~Gi~v~~vdd~~-d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~ 175 (436)
T PRK07812 105 AGAGDHIVSSPRL--------YGGTYNLFHYTLPKLGIEVSFVEDPD-DLDAWRAAVRPNTKAFFAETISNPQIDVLDIP 175 (436)
T ss_pred hCCCCEEEEeCCc--------chHHHHHHHHHhhcCeEEEEEECCCC-CHHHHHHhCCCCCeEEEEECCCCCCCeecCHH
Confidence 4567777666432 223333333 3567888877773 31 100 0 00111111223445579999999
Q ss_pred HHHHHHHHCCCEEEEEEcc
Q 014892 97 ALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~ 115 (416)
++++.||++|+.||+|-..
T Consensus 176 ~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 176 GVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 9999999999999999864
No 373
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=29.92 E-value=49 Score=32.53 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=27.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
++..+|+..+++++++-||++|+.||+|-..-
T Consensus 155 p~~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 155 VDGEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCCCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 45567999999999999999999999998743
No 374
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=29.89 E-value=1.6e+02 Score=25.55 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=41.6
Q ss_pred HHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCC-------HHHHHHHHHHHHHCCCEEEEEE
Q 014892 45 WRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS-------EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 45 ~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt-------~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
++.+.+.++..+.||+..|.+.|.- +...+.... .+-|++|++.|.++|++|.+.-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~-------------~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR-------------YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT-------------ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc-------------cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 8899999999999999999988642 000111111 3569999999999999999973
No 375
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=29.86 E-value=53 Score=24.51 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=20.5
Q ss_pred HhhhhhHHHcCCCEEEeCCCCCCC
Q 014892 49 ERKVPDISKSGFTSVWLPPATHSF 72 (416)
Q Consensus 49 ~~~LdyLk~LGv~~I~L~Pi~~~~ 72 (416)
...++.+|++|+..|+-+|+-.++
T Consensus 27 ~~~~~~~~~~G~~~V~yLPLAa~~ 50 (79)
T PF12996_consen 27 RSFVEEYRNLGAENVFYLPLAANP 50 (79)
T ss_pred HHHHHHHHHcCCCCEEEccccCCH
Confidence 357889999999999999987665
No 376
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=29.70 E-value=42 Score=26.04 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPE 75 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~ 75 (416)
.+.+.|+.+.+.|++.|.+.|.|-.++.|
T Consensus 45 ~~~~~l~~l~~~g~~~v~vvPlfl~~G~h 73 (101)
T cd03416 45 SLAEALDELAAQGATRIVVVPLFLLAGGH 73 (101)
T ss_pred CHHHHHHHHHHcCCCEEEEEeeEeCCCcc
Confidence 46667778888999999999999886544
No 377
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=29.64 E-value=1.7e+02 Score=27.73 Aligned_cols=35 Identities=6% Similarity=-0.133 Sum_probs=28.7
Q ss_pred eeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCC
Q 014892 29 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT 69 (416)
Q Consensus 29 ~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~ 69 (416)
.+|.++..-+ .+..++...+.+++|+++|-++|++
T Consensus 72 ~vi~gv~~~~------~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 72 PVIAGTGSNS------TAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred cEEeecCCch------HHHHHHHHHHHHHcCCCEEEECCCc
Confidence 4566665544 8899999999999999999998865
No 378
>PLN02428 lipoic acid synthase
Probab=29.58 E-value=1.7e+02 Score=28.83 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=45.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.+++.++.|+++|++.+-+...... +.. +..| .+|=++++|+.+-+.+-+.|.+-+.
T Consensus 260 T~Edv~e~l~~Lrelgvd~vtigqyL~P-s~~------h~~v-~~~v~p~~f~~~~~~~~~~gf~~v~ 319 (349)
T PLN02428 260 TDEEVVQTMEDLRAAGVDVVTFGQYLRP-TKR------HLPV-KEYVTPEKFEFWREYGEEMGFRYVA 319 (349)
T ss_pred CHHHHHHHHHHHHHcCCCEEeeccccCC-Ccc------eeee-ecccCHHHHHHHHHHHHHcCCceEE
Confidence 6889999999999999999877665422 211 1222 3566899999999999999987665
No 379
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=29.58 E-value=59 Score=33.02 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
+++++++.+-|+++||.||+|-.
T Consensus 172 ~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 172 MANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred HHHHHHHHHHHHHcCCEEEEEch
Confidence 68899999999999999999998
No 380
>PRK08960 hypothetical protein; Provisional
Probab=29.52 E-value=61 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
.+++++|++.||++|+-||.|=++.+.
T Consensus 184 ~~~~~~l~~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 184 RDELAALSQALRARGGHLVVDEIYHGL 210 (387)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 689999999999999999999988654
No 381
>PRK12677 xylose isomerase; Provisional
Probab=29.41 E-value=1.4e+02 Score=29.82 Aligned_cols=54 Identities=7% Similarity=0.093 Sum_probs=35.1
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+.+.++.++++|+.+|.|..-- -..+ ..+. .-.....+++.+.+.+.||+|.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~----l~p~------~~~~-~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDD----LVPF------GATD-AERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccc----cCCC------CCCh-hhhHHHHHHHHHHHHHcCCeeEE
Confidence 37789999999999999983210 0011 1110 01123578888889999999775
No 382
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=29.31 E-value=1.5e+02 Score=27.72 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=48.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCC-----------------CCCCC---C------cccccCCCCCC-CCCCHHHHH
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATH-----------------SFAPE---G------YLPQNLYSLNS-SYGSEHLLK 96 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~-----------------~~~~~---G------Y~~~d~~~id~-~~Gt~~d~~ 96 (416)
+.+..++.++.|+++++..|+ =|+-. ..+-+ . ....|...+++ +.|+..+.+
T Consensus 139 ~~~~A~~~~~~l~~~~i~~iE-qP~~~~d~~~~~~l~~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~ 217 (263)
T cd03320 139 SLEEALAFLEALAAGRIEYIE-QPLPPDDLAELRRLAAGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALL 217 (263)
T ss_pred CHHHHHHHHHhhcccCCceEE-CCCChHHHHHHHHhhcCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHH
Confidence 478888888999998888777 23321 11111 1 22355556665 469999999
Q ss_pred HHHHHHHHCCCEEEEE
Q 014892 97 ALLHKMKQHKVRAMAD 112 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD 112 (416)
++++.|+++||++++-
T Consensus 218 ~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 218 ELAEEARARGIPAVVS 233 (263)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999873
No 383
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=29.27 E-value=48 Score=32.99 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
..|+..+++++++.||++|+.||+|-++-
T Consensus 158 Ptg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 158 PLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 35888999999999999999999998754
No 384
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=29.24 E-value=52 Score=31.55 Aligned_cols=24 Identities=21% Similarity=0.063 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
+.++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 578999999999999999999964
No 385
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.23 E-value=3.4e+02 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhc
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGA 213 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~ 213 (416)
.+++.+.++... +.|+|.+++ |.+..+.+.-..++...+
T Consensus 144 ~~~l~~~~~~~~-~~Ga~~I~l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 144 LDFLIEFAKAAE-EAGADRVRFCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeccCCCCCHHHHHHHHHHH
Confidence 356777777765 788888776 667777666555554443
No 386
>PRK07568 aspartate aminotransferase; Provisional
Probab=29.23 E-value=58 Score=32.18 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
+.++++++++.||++|+.||.|-++-...
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~~ 208 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREFV 208 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhcc
Confidence 46899999999999999999999887543
No 387
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=29.12 E-value=61 Score=30.44 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=24.3
Q ss_pred CCCCC--HHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGS--EHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt--~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
.++|. .++|+++++.++++|..||+|+=+.
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 44554 5678889999999999999999554
No 388
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.91 E-value=1.9e+02 Score=28.49 Aligned_cols=56 Identities=7% Similarity=-0.095 Sum_probs=40.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.+.+-.+.|+.+++ .|.|.|.++.+. .+| -. =+.+.++++.+.+.++||.|.+
T Consensus 277 s~e~a~~La~llk~l~~-~VnLIPyn~~~~-~~~-----~~-----ps~e~i~~f~~~l~~~gi~vtv 332 (356)
T PRK14462 277 DLKSAKKLVKLLNGIKA-KVNLILFNPHEG-SKF-----ER-----PSLEDMIKFQDYLNSKGLLCTI 332 (356)
T ss_pred CHHHHHHHHHHHhhcCc-EEEEEeCCCCCC-CCC-----CC-----CCHHHHHHHHHHHHHCCCcEEE
Confidence 46666666777888875 899999776432 233 22 1478899999999999999966
No 389
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.90 E-value=61 Score=26.18 Aligned_cols=25 Identities=16% Similarity=0.086 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.-|..++..+.++.|+++|++||.
T Consensus 55 S~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 55 SHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred eCCCCChHHHHHHHHHHHcCCeEEE
Confidence 6668899999999999999999997
No 390
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=28.83 E-value=68 Score=32.40 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
.++++++++.|+++|+-||.|=++.|...
T Consensus 209 ~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 209 YEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 68899999999999999999999987653
No 391
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.78 E-value=90 Score=29.18 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCCCCCcHHHHHhhhh--hHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCC---CCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 38 ESCKHDWWRNLERKVP--DISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS---YGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 38 ~~~~~G~~~gi~~~Ld--yLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~---~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
+.+-.+++-.+..+++ .||+.|-+++=|+= ||.+|.. --...=++++..+||+.||-.++.
T Consensus 101 d~t~~~rlp~l~~~isa~riK~~G~~avK~Lv--------------y~~~D~~e~neqk~a~ierigsec~aedi~f~lE 166 (306)
T COG3684 101 DNTIPVRLPDLLRKISAKRIKEDGGDAVKFLV--------------YYRSDEDEINEQKLAYIERIGSECHAEDLPFFLE 166 (306)
T ss_pred CCCCCccchhhhhhhCHHHHHHhcccceEEEE--------------EEcCCchHHhHHHHHHHHHHHHHhhhcCCceeEe
Confidence 4444478888888876 68999999998876 5566643 001234889999999999999998
Q ss_pred Ecc
Q 014892 113 IVI 115 (416)
Q Consensus 113 ~V~ 115 (416)
++.
T Consensus 167 ~lt 169 (306)
T COG3684 167 PLT 169 (306)
T ss_pred eee
Confidence 764
No 392
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=28.63 E-value=49 Score=32.81 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=49.6
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhh-hHHHcCCCEEEeCCCCCCC----CCCCcccccCCCCCCCCCCHHHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSF----APEGYLPQNLYSLNSSYGSEHLLKAL 98 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~Ld-yLk~LGv~~I~L~Pi~~~~----~~~GY~~~d~~~id~~~Gt~~d~~~L 98 (416)
+.+||.|++.-.. +.+....+. .++..|++.+++.+.-... -...=...=.-.+....|...+++++
T Consensus 82 l~~Gd~Vl~~~~~--------y~~~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I 153 (378)
T TIGR01329 82 LNNGDEIIAGDDL--------YGGTDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKI 153 (378)
T ss_pred hCCCCEEEEcCCC--------chHHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHH
Confidence 5677777765432 333333333 3466788888775421000 00010111111234457788899999
Q ss_pred HHHHHHCCCEEEEEEcc
Q 014892 99 LHKMKQHKVRAMADIVI 115 (416)
Q Consensus 99 v~~aH~~Gi~VilD~V~ 115 (416)
++.||++|+.||+|-..
T Consensus 154 ~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 154 SEMAHAQNALVVVDNTM 170 (378)
T ss_pred HHHHHHcCCEEEEECCC
Confidence 99999999999999973
No 393
>PRK14012 cysteine desulfurase; Provisional
Probab=28.43 E-value=68 Score=31.90 Aligned_cols=82 Identities=12% Similarity=0.209 Sum_probs=50.1
Q ss_pred ccCceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC----------CCCcccccCCCCCCCCCCHHH
Q 014892 25 RNGREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA----------PEGYLPQNLYSLNSSYGSEHL 94 (416)
Q Consensus 25 ~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~----------~~GY~~~d~~~id~~~Gt~~d 94 (416)
.+|+.|++... .+.....-...++..|++.+++.+- +... ...-...-...+....|...+
T Consensus 92 ~~gd~Vi~~~~--------~~~s~~~~~~~~~~~g~~~~~v~~~-~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~ 162 (404)
T PRK14012 92 KKGKHIITSKT--------EHKAVLDTCRQLEREGFEVTYLDPQ-SNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQD 162 (404)
T ss_pred CCCCEEEEecC--------ccHHHHHHHHHHHhCCCEEEEEccC-CCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhh
Confidence 45666665422 3444444455567779988887432 1110 001111112233445799999
Q ss_pred HHHHHHHHHHCCCEEEEEEcc
Q 014892 95 LKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 95 ~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
++++.+-||++|+.||+|-+-
T Consensus 163 ~~~I~~la~~~g~~vivD~a~ 183 (404)
T PRK14012 163 IAAIGEICRERGIIFHVDAAQ 183 (404)
T ss_pred HHHHHHHHHHcCCEEEEEcch
Confidence 999999999999999999974
No 394
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=28.37 E-value=51 Score=26.37 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=22.9
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPE 75 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~ 75 (416)
+.+.|+.+++.|++.|.+.|.|-+++.|
T Consensus 47 ~~~~l~~l~~~g~~~i~vvP~fL~~G~h 74 (117)
T cd03414 47 LPEALERLRALGARRVVVLPYLLFTGVL 74 (117)
T ss_pred HHHHHHHHHHcCCCEEEEEechhcCCch
Confidence 6667777788999999999999887544
No 395
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=28.26 E-value=86 Score=31.01 Aligned_cols=28 Identities=21% Similarity=0.160 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 90 GSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
|+-+...+-++.+++.|++|.+-+|++-
T Consensus 138 g~f~~~~~~i~~l~~~g~~v~i~~vv~~ 165 (378)
T PRK05301 138 GAFAKKLAVARLVKAHGYPLTLNAVIHR 165 (378)
T ss_pred chHHHHHHHHHHHHHCCCceEEEEEeec
Confidence 5677788888999999999988887753
No 396
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=28.23 E-value=87 Score=25.47 Aligned_cols=29 Identities=7% Similarity=0.178 Sum_probs=24.6
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCCCCC
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSFAPE 75 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~ 75 (416)
.+.+.|+.|+..|++.|.+.|.|-+.+.|
T Consensus 47 ~l~~~l~~l~~~g~~~v~vvPlfl~~G~h 75 (126)
T PRK00923 47 TIPEALKKLIGTGADKIIVVPVFLAHGVH 75 (126)
T ss_pred CHHHHHHHHHHcCCCEEEEEchhhccCcc
Confidence 47788888899999999999999877654
No 397
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=28.22 E-value=34 Score=33.52 Aligned_cols=84 Identities=11% Similarity=0.120 Sum_probs=55.6
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhhhHH-HcCCCEEEeCCCCCCCC---------CCCcccccCCCCCCCCCCHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVPDIS-KSGFTSVWLPPATHSFA---------PEGYLPQNLYSLNSSYGSEH 93 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk-~LGv~~I~L~Pi~~~~~---------~~GY~~~d~~~id~~~Gt~~ 93 (416)
+..++.+++--.. +.+...-+..+. ..|++..++..-....- .......-+-.++..-|...
T Consensus 85 ~~~g~~vl~~~~~--------~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~ 156 (371)
T PF00266_consen 85 LKPGDEVLVTSNE--------HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRN 156 (371)
T ss_dssp GTTTCEEEEEESS--------HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBS
T ss_pred ccccccccccccc--------ccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEe
Confidence 5566655544333 556665555554 67888877743222110 13445555667778889999
Q ss_pred HHHHHHHHHHHCCCEEEEEEcc
Q 014892 94 LLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 94 d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+++++.+.||++|+.+++|.+-
T Consensus 157 pi~~I~~~~~~~~~~~~vD~~~ 178 (371)
T PF00266_consen 157 PIEEIAKLAHEYGALLVVDAAQ 178 (371)
T ss_dssp SHHHHHHHHHHTTSEEEEE-TT
T ss_pred eeceehhhhhccCCceeEechh
Confidence 9999999999999999999963
No 398
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=28.02 E-value=1e+02 Score=24.96 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCEEEEEEccccCcCCCCCCC
Q 014892 95 LKALLHKMKQHKVRAMADIVINHRVGTTQGHG 126 (416)
Q Consensus 95 ~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~ 126 (416)
++++++.+.+.||++++||=.+=.|. .|+++
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~-~~~~~ 32 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSR-KPGFN 32 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCC-CCCCC
Confidence 57888899999999999998776666 66543
No 399
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.87 E-value=4.1e+02 Score=26.16 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|.+++ |.+..+.+.-..++.+.++
T Consensus 140 ~~~l~~~~~~~~-~~g~~~i~l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 140 IDFLIKVFKRAE-EAGADRINIADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEeCCCCccCHHHHHHHHHHHh
Confidence 456777777765 889998876 6777777776666666554
No 400
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=27.83 E-value=2.6e+02 Score=23.99 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=48.7
Q ss_pred cCCCeeEEecCCcCCCchhHHHHHHHHHHHHHhCcccCCCCeE--EEEecCCEEEE--EECCEEEEEEcCCCCCCCCCCc
Q 014892 327 MHPGIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHSRSSIK--ILEAQSNLYSA--IIGDKVCMKIGDGSWCPAGKEW 402 (416)
Q Consensus 327 t~pGiP~Iy~G~E~gw~~~l~~~~~~Li~lR~~~~~l~~G~~~--~~~~~~~~~~~--~R~~~~lvvinn~~~~~~~~~~ 402 (416)
.+|-+|+.|.-.. ||...+.+-+++|++-|+.+-.+..-+.. +...+.++-.- -|= ..++++...-...+.+--
T Consensus 7 e~p~~~VA~~rh~-G~~~~~~~~~~~l~~W~~~~~l~p~~S~~~gI~~ddP~~Tp~e~~R~-D~cv~v~~~~~~n~~~v~ 84 (154)
T COG3449 7 ELPPIPVAYLRHV-GDPATLKQTFEQLIAWRRENGLLPEQSETLGIYQDDPDTTPAEKCRY-DACVVVPEPIPENSEGVQ 84 (154)
T ss_pred ecCCceEEEEEee-CcHHHHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCCCCHHHcee-eEEEEcCCccCCCCCcee
Confidence 3577788777544 47778999999999999999777653322 22222222111 111 344455422222222222
Q ss_pred EEeeeCCceEEee
Q 014892 403 TLATSGHKYAVWH 415 (416)
Q Consensus 403 ~~~ls~~~~~~~~ 415 (416)
--.++|..|+|.+
T Consensus 85 ~~~i~GG~YAV~r 97 (154)
T COG3449 85 LGEIPGGLYAVAR 97 (154)
T ss_pred EeeecCCceEEEE
Confidence 3456777777764
No 401
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=27.72 E-value=2.3e+02 Score=27.18 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=72.7
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC-----CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEEccc
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF-----APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH--KVRAMADIVIN 116 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-----~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~--Gi~VilD~V~N 116 (416)
.++.+.+.+..+.+|||.+|-|-||-+.. +...|++. |- .++-|+++++. .|-||-|+.+.
T Consensus 59 s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~---------gi---vqravr~ik~~~p~l~iitDvcLc 126 (330)
T COG0113 59 SLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPD---------GI---VQRAVRAIKEAFPELVVITDVCLC 126 (330)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCC---------Ch---HHHHHHHHHHhCCCeEEEeeeccc
Confidence 48999999999999999999999988542 22333333 22 33444444432 88999999875
Q ss_pred cCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcC--CCCCHHHHHHHHHHHHHHHHhcCCCeEE
Q 014892 117 HRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNI--DHTQHFVRKDIIAWLRWLRNTVGFQDFR 194 (416)
Q Consensus 117 H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl--n~~~~~v~~~l~~~~~~w~~~~gvDGfR 194 (416)
-... .. .|. ..+- ...|.+..+.+.+.+.-.. +.|+|=.
T Consensus 127 eyT~---------------------HG-------------HcG---il~~~~~V~ND~Tle~l~k~Avs~A-eAGAdiv- 167 (330)
T COG0113 127 EYTD---------------------HG-------------HCG---ILDDGGYVDNDETLEILAKQAVSQA-EAGADIV- 167 (330)
T ss_pred CCcC---------------------CC-------------ccc---cccCCCeecchHHHHHHHHHHHHHH-HcCCCee-
Confidence 2111 00 000 0000 2346666777777777776 8888743
Q ss_pred ecccCCCcHHHHHHHHHhcC
Q 014892 195 FDFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 195 lD~a~~~~~~~~~~~~~~~~ 214 (416)
+...|-......+++++.
T Consensus 168 --APSdMMDGrV~aIR~aLd 185 (330)
T COG0113 168 --APSDMMDGRVGAIREALD 185 (330)
T ss_pred --cccccccchHHHHHHHHH
Confidence 455666666777777654
No 402
>PLN00175 aminotransferase family protein; Provisional
Probab=27.72 E-value=69 Score=32.12 Aligned_cols=29 Identities=21% Similarity=0.151 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
.++++++++.|+++|+-||.|-++.+...
T Consensus 206 ~~~l~~l~~~a~~~~~~ii~De~Y~~l~~ 234 (413)
T PLN00175 206 REELELIASLCKENDVLAFTDEVYDKLAF 234 (413)
T ss_pred HHHHHHHHHHHHHcCcEEEEecccCcccc
Confidence 68999999999999999999999877643
No 403
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=27.66 E-value=2e+02 Score=27.24 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=36.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHH-HHHHHHHC-CCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKA-LLHKMKQH-KVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~-Lv~~aH~~-Gi~Vil 111 (416)
+.+..++...+.+++|+++|.++|++ |+.. +.+++.+ +-+-|.+- ++-||+
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~------------y~~~-----~~~~i~~~~~~v~~a~~~lpi~i 133 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPF------------YYKF-----SFEEIKDYYREIIAAAASLPMII 133 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC------------CCCC-----CHHHHHHHHHHHHHhcCCCCEEE
Confidence 58999999999999999999998865 2221 2344444 44445556 788887
No 404
>PRK07324 transaminase; Validated
Probab=27.54 E-value=78 Score=31.19 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+.++++++++.|+++|+.||.|-++.+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 5788999999999999999999987543
No 405
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=27.48 E-value=1.4e+02 Score=25.89 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=36.2
Q ss_pred hHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 54 DISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 54 yLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.|..+|++++.+..... ..-...|-.-+=+.-|...+..++++.|+++|++||.
T Consensus 54 ~l~~~g~~~~~~~~~~~----~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 54 RLMHLGLNVYVVGETTT----PAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHhCCCeEEEeCCCCC----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 47778999888754321 1112222222225567888999999999999999986
No 406
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.31 E-value=2.3e+02 Score=27.85 Aligned_cols=57 Identities=12% Similarity=-0.050 Sum_probs=40.4
Q ss_pred cHHHHHhhhhhHHHcC-CCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSG-FTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LG-v~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+...+.+-.+.|+.++ +..|.|.|.++.+. .+| -.. +.++++++.+.+.++|+.|.+
T Consensus 266 s~e~a~~La~~l~~l~~~~~VnLIPynp~~~-~~~-----~~p-----s~e~i~~f~~~L~~~gi~v~v 323 (348)
T PRK14467 266 SPEDALRLAQLIGKNKKKFKVNLIPFNPDPE-LPY-----ERP-----ELERVYKFQKILWDNGISTFV 323 (348)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEecCCCCCC-CCC-----CCC-----CHHHHHHHHHHHHHCCCcEEE
Confidence 4556666667778774 67899999776432 133 121 478899999999999999976
No 407
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=27.10 E-value=53 Score=32.58 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=26.7
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 86 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 86 d~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
....|+..+++++++.||++|+.||+|-++-
T Consensus 149 ~np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 149 SNPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred CCCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 3446888899999999999999999999854
No 408
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=27.07 E-value=43 Score=22.40 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHH-HHCCCE
Q 014892 89 YGSEHLLKALLHKM-KQHKVR 108 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~a-H~~Gi~ 108 (416)
|-+.+++.+|++++ |-+|+|
T Consensus 4 ~~~~e~ld~L~~aL~~prG~R 24 (46)
T PF15614_consen 4 YDDPEELDELLKALENPRGKR 24 (46)
T ss_pred ccCHHHHHHHHHHHcCcccHh
Confidence 34789999999999 888875
No 409
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=27.06 E-value=52 Score=32.19 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..|...+++++++.||++|+.||+|-+.
T Consensus 180 ~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 180 MDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred CCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 4566778999999999999999999986
No 410
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=27.04 E-value=7.1e+02 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCcHHHHHHHHHhcC
Q 014892 174 RKDIIAWLRWLRNTVGFQDFRF-DFARGYSAKYVKEYIEGAR 214 (416)
Q Consensus 174 ~~~l~~~~~~w~~~~gvDGfRl-D~a~~~~~~~~~~~~~~~~ 214 (416)
.+++.+.++... +.|+|-+++ |++..+.+.-..++..+++
T Consensus 152 ~e~~~~~a~~l~-~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk 192 (467)
T PRK14041 152 LEYYLEFARELV-DMGVDSICIKDMAGLLTPKRAYELVKALK 192 (467)
T ss_pred HHHHHHHHHHHH-HcCCCEEEECCccCCcCHHHHHHHHHHHH
Confidence 577888888776 899999886 8888888877666666554
No 411
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=26.99 E-value=4.7e+02 Score=25.40 Aligned_cols=125 Identities=11% Similarity=0.000 Sum_probs=67.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC--CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF--APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~--~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
.++.+.+.+..+.++||.+|-|-|+.+.. ...|-... +| -|-...--+.|+++. -.|-||.|+.+-.-...
T Consensus 55 sid~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~-----~~-~g~v~~air~iK~~~-pdl~vi~Dvclc~YT~h 127 (324)
T PF00490_consen 55 SIDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAY-----NP-DGLVQRAIRAIKKAF-PDLLVITDVCLCEYTSH 127 (324)
T ss_dssp EHHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGG-----ST-TSHHHHHHHHHHHHS-TTSEEEEEE-STTTBTS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhccc-----CC-CChHHHHHHHHHHhC-CCcEEEEecccccccCC
Confidence 69999999999999999999999985432 12221111 11 122233333333333 47999999988643331
Q ss_pred CCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014892 122 TQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFARGY 201 (416)
Q Consensus 122 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~ 201 (416)
. +.. +... .+-...|.+..+.+.+.+.-.. +.|+|-.- ...|
T Consensus 128 G-----------------HcG-il~~----------------~~g~idND~Tl~~Lak~Al~~A-~AGADiVA---PSdM 169 (324)
T PF00490_consen 128 G-----------------HCG-ILDD----------------EDGEIDNDETLERLAKQALSHA-EAGADIVA---PSDM 169 (324)
T ss_dssp S-----------------SSS-EB-C----------------TTSSBEHHHHHHHHHHHHHHHH-HHT-SEEE---E-S-
T ss_pred C-----------------ceE-EEEC----------------CCCeEecHHHHHHHHHHHHHHH-HhCCCeec---cccc
Confidence 0 000 1100 1123357788888888888886 89998653 3344
Q ss_pred cHHHHHHHHHhc
Q 014892 202 SAKYVKEYIEGA 213 (416)
Q Consensus 202 ~~~~~~~~~~~~ 213 (416)
...-...+++++
T Consensus 170 MDGrV~aIR~aL 181 (324)
T PF00490_consen 170 MDGRVGAIREAL 181 (324)
T ss_dssp -TTHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 434444554443
No 412
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=26.96 E-value=66 Score=30.56 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCCCC--HHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGS--EHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt--~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
..+|. .+.|+++|+++++.|+.||+|+=.+
T Consensus 65 ~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~ 96 (278)
T PRK00125 65 EAHGAEGLAQLERTIAYLREAGVLVIADAKRG 96 (278)
T ss_pred HhcCchhhhHHHHHHHHHHHCCCcEEEEeecC
Confidence 34453 4678889999999999999999554
No 413
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=26.94 E-value=2.2e+02 Score=27.95 Aligned_cols=84 Identities=10% Similarity=-0.083 Sum_probs=57.7
Q ss_pred eeeeccCceeEEEeee-cCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCC-------------------CCC-----
Q 014892 21 RAVIRNGREILFQGFN-WESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APE----- 75 (416)
Q Consensus 21 ~~~~~~~~~~~~q~f~-~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-------------------~~~----- 75 (416)
+..+.++-.+++-+-. |+ .+..+..+..|+++|+..|+ =|+-... +-+
T Consensus 157 re~~G~~~~l~vDaN~~w~------~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~ 229 (361)
T cd03322 157 REKFGFEFHLLHDVHHRLT------PNQAARFGKDVEPYRLFWME-DPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDW 229 (361)
T ss_pred HhccCCCceEEEECCCCCC------HHHHHHHHHHhhhcCCCEEE-CCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHH
Confidence 4444444345554544 44 78888888889999988777 3443211 111
Q ss_pred ----CcccccCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 76 ----GYLPQNLYSLNS-SYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 76 ----GY~~~d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.....|...+++ +.|+..+.+++++.|+++||+++.
T Consensus 230 ~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 230 QNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGW 270 (361)
T ss_pred HHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeec
Confidence 134567777886 459999999999999999999985
No 414
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=26.85 E-value=79 Score=31.45 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.++++++++.|+++|+-||.|-++.+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 188 RDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 4789999999999999999999987654
No 415
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=26.67 E-value=99 Score=30.36 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=28.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 84 SLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 84 ~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+.|.-.+.++..+.++.||+.||++-.=+.+.|
T Consensus 179 ~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 179 QICPEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred hcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 4555545678888999999999999999888887
No 416
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=26.65 E-value=2e+02 Score=24.78 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=33.1
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCc-ccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGY-LPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY-~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.+....++|++.|.++|+++..+..++ .+ .+.+.++++.+. ..+.|+.+.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---~~~pv~a~G 157 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPP----------LGLELLREIAEL---VEIPVVAIG 157 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCC----------CCHHHHHHHHHh---CCCCEEEEC
Confidence 3445567789999999999987654343 11 235666666544 457777764
No 417
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=26.63 E-value=52 Score=32.63 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=40.8
Q ss_pred hHHHcCCCEEEeCCCCCCC-C--------CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 54 DISKSGFTSVWLPPATHSF-A--------PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 54 yLk~LGv~~I~L~Pi~~~~-~--------~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..+..|++.+++..-.... . ...=...-.-.++...|...+++++++.||++|+.||+|.+.
T Consensus 126 ~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 126 VAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred HHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 3467899888874311100 0 011111222345566788889999999999999999999986
No 418
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.55 E-value=73 Score=25.60 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=41.8
Q ss_pred CcHHHHHhhhh-hHHHcCCCEEEeCCCCCC-CC-CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 43 DWWRNLERKVP-DISKSGFTSVWLPPATHS-FA-PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 43 G~~~gi~~~Ld-yLk~LGv~~I~L~Pi~~~-~~-~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
|.-.++...+. +|+++|.......+..+. .+ -...++.|..-+=+.=|...++.++++.|+++|++||+
T Consensus 14 G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~ 85 (131)
T PF01380_consen 14 GSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPVIL 85 (131)
T ss_dssp THHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeEEE
Confidence 44555555555 467888777766544331 11 11222333222224557789999999999999999954
No 419
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=26.50 E-value=58 Score=32.71 Aligned_cols=30 Identities=7% Similarity=-0.030 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
...|...+++++++.||++|+.||+|-++-
T Consensus 156 NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 156 NPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 346777899999999999999999999874
No 420
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=26.50 E-value=58 Score=31.63 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=44.8
Q ss_pred HHHhhhhhHHHcCCCEEEeCCCCCCC-------C--CCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc--c
Q 014892 47 NLERKVPDISKSGFTSVWLPPATHSF-------A--PEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV--I 115 (416)
Q Consensus 47 gi~~~LdyLk~LGv~~I~L~Pi~~~~-------~--~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V--~ 115 (416)
.+..-+..++..|+..+.+..--... . ..+-...-...+....|...+++++++.||++|+.||+|-+ +
T Consensus 100 s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~ 179 (353)
T TIGR03235 100 AVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVV 179 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhc
Confidence 34444556677898888875321110 0 01111111223445678888999999999999999999997 4
Q ss_pred ccC
Q 014892 116 NHR 118 (416)
Q Consensus 116 NH~ 118 (416)
.+.
T Consensus 180 g~~ 182 (353)
T TIGR03235 180 GKI 182 (353)
T ss_pred CCc
Confidence 444
No 421
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=26.40 E-value=79 Score=29.45 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+.+++++|++.|+..||.+++.+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 35789999999999999999987
No 422
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=26.36 E-value=75 Score=32.01 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEec
Q 014892 169 TQHFVRKDIIAWLRWLRNTVGFQDFRFD 196 (416)
Q Consensus 169 ~~~~v~~~l~~~~~~w~~~~gvDGfRlD 196 (416)
.+++.|+.+++.+..+++++++||+-+|
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 4688899999999888889999999998
No 423
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=26.17 E-value=1e+02 Score=29.77 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=37.4
Q ss_pred hhhhHHHcCCCEEEeCCCCCCCCCC-CcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 51 KVPDISKSGFTSVWLPPATHSFAPE-GYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 51 ~LdyLk~LGv~~I~L~Pi~~~~~~~-GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+..||++|++ +.++| +..... -+.+.. .+.|. -+.++..+.++.||+.||++-.++.+.|
T Consensus 112 ~l~~Lk~aG~~-~~~~~--Et~~~~l~~~~~~--~~~p~-k~~~~~l~~i~~a~~~Gi~~~s~~i~G~ 173 (322)
T TIGR03550 112 ELARLKPVNAS-MGLML--ETTSERLCKGEAH--YGSPG-KDPAVRLETIEDAGRLKIPFTTGILIGI 173 (322)
T ss_pred HHHHHHhhCCC-CCcch--hhhcccccccccc--CCCCC-CCHHHHHHHHHHHHHcCCCccceeeEeC
Confidence 46677787764 45553 222111 111111 11221 1245788999999999999999999998
No 424
>PRK07777 aminotransferase; Validated
Probab=26.17 E-value=74 Score=31.37 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.+++++|++.|+++|+.||.|-++-+..
T Consensus 178 ~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 178 AAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred HHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 6899999999999999999999887654
No 425
>PRK06108 aspartate aminotransferase; Provisional
Probab=26.16 E-value=66 Score=31.50 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+.+++++|++.|+++|+-||.|-++-+...
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 205 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLYY 205 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence 578999999999999999999988776543
No 426
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=26.09 E-value=86 Score=25.75 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEE
Q 014892 90 GSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+.+|++++++.|+++|++|..
T Consensus 8 ~s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 8 KSVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SSHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEE
Confidence 3689999999999999999987
No 427
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=26.08 E-value=53 Score=35.84 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=54.9
Q ss_pred ceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCcccccCCCCCCCCC--------CHHHHH
Q 014892 28 REILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSYG--------SEHLLK 96 (416)
Q Consensus 28 ~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~---~~GY~~~d~~~id~~~G--------t~~d~~ 96 (416)
..+++++-.-... -++..+.+.|..|+++||..- |-=+-...+ +-.--+.||-+||..|= ...-++
T Consensus 662 ~~l~~ei~e~~~~--~~~~~~~~~l~~l~~~G~~i~-ld~fg~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~ 738 (799)
T PRK11359 662 HQLTVEITESMMM--EHDTEIFKRIQILRDMGVGLS-VDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLE 738 (799)
T ss_pred HhEEEEEcCchhh--cCHHHHHHHHHHHHHCCCEEE-EECCCCchhhHHHHhhCCCCEEEECHHHHhhcccChhHHHHHH
Confidence 3555555543221 258889999999999999543 322111111 11112466777776552 123489
Q ss_pred HHHHHHHHCCCEEEEEEcccc
Q 014892 97 ALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.++.-||+.||+||++.|=+.
T Consensus 739 ~~~~~~~~~~i~via~gVe~~ 759 (799)
T PRK11359 739 AITSIGQSLNLTVVAEGVETK 759 (799)
T ss_pred HHHHHHHHCCCeEEEEcCCCH
Confidence 999999999999999987663
No 428
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=26.06 E-value=3.3e+02 Score=23.06 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=44.8
Q ss_pred CceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC-
Q 014892 27 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH- 105 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~- 105 (416)
+-.++.|++.-+ ..+-+......++++|++.|.|..-. +|. .+...++++++++.
T Consensus 57 ~~~~~~~~~~~~-----~~~~~~~~a~~~~~~g~d~v~l~~~~------~~~-------------~~~~~~~~~~i~~~~ 112 (200)
T cd04722 57 DLPLGVQLAIND-----AAAAVDIAAAAARAAGADGVEIHGAV------GYL-------------AREDLELIRELREAV 112 (200)
T ss_pred CCcEEEEEccCC-----chhhhhHHHHHHHHcCCCEEEEeccC------CcH-------------HHHHHHHHHHHHHhc
Confidence 345677877655 12212222467899999999987532 222 57788888888887
Q ss_pred -CCEEEEEEccc
Q 014892 106 -KVRAMADIVIN 116 (416)
Q Consensus 106 -Gi~VilD~V~N 116 (416)
++.|+..+..+
T Consensus 113 ~~~~v~~~~~~~ 124 (200)
T cd04722 113 PDVKVVVKLSPT 124 (200)
T ss_pred CCceEEEEECCC
Confidence 99999998654
No 429
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.95 E-value=1e+02 Score=30.47 Aligned_cols=74 Identities=5% Similarity=-0.074 Sum_probs=42.9
Q ss_pred CcHHHHHhhhhhHHHcC-CCEEEeCCCCCCC-------CC-------CCcccccCCCCCC--CCCCHHHHHHHHHHHHHC
Q 014892 43 DWWRNLERKVPDISKSG-FTSVWLPPATHSF-------AP-------EGYLPQNLYSLNS--SYGSEHLLKALLHKMKQH 105 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LG-v~~I~L~Pi~~~~-------~~-------~GY~~~d~~~id~--~~Gt~~d~~~Lv~~aH~~ 105 (416)
-+++-+.+.+.+|++.. --.|.+.|+-+.. +- .-|++.-|-.|.+ +--+.++-.+-++.|.+.
T Consensus 134 ~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~a 213 (366)
T TIGR02351 134 AGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKA 213 (366)
T ss_pred CCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHc
Confidence 35666777777776531 0123444543221 11 1244444444553 222577888899999999
Q ss_pred CCE-EEEEEccc
Q 014892 106 KVR-AMADIVIN 116 (416)
Q Consensus 106 Gi~-VilD~V~N 116 (416)
||+ |-+++.+.
T Consensus 214 G~~~v~~g~i~G 225 (366)
T TIGR02351 214 GMRKIGIGALLG 225 (366)
T ss_pred CCCeeceeEEEe
Confidence 998 77877766
No 430
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=25.92 E-value=1.1e+02 Score=27.44 Aligned_cols=86 Identities=9% Similarity=0.130 Sum_probs=51.3
Q ss_pred eeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCC---CCCcccccCCCCCCCC--------CCHHHHHH
Q 014892 29 EILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPATHSFA---PEGYLPQNLYSLNSSY--------GSEHLLKA 97 (416)
Q Consensus 29 ~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~---~~GY~~~d~~~id~~~--------Gt~~d~~~ 97 (416)
.+++.+-...... +...+.+.+..|+++|+. |+|-=+-.... .-.....|+-++|..+ ....-++.
T Consensus 117 ~l~iei~e~~~~~--~~~~~~~~~~~l~~~G~~-l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~ 193 (240)
T cd01948 117 RLVLEITESALID--DLEEALATLRRLRALGVR-IALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRA 193 (240)
T ss_pred HEEEEEecchhhC--CHHHHHHHHHHHHHCCCe-EEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHH
Confidence 3455554433222 345688889999999997 34421111110 1111223455555332 34567999
Q ss_pred HHHHHHHCCCEEEEEEcccc
Q 014892 98 LLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 98 Lv~~aH~~Gi~VilD~V~NH 117 (416)
+++.||..|++||+.-|=|.
T Consensus 194 l~~~~~~~~~~via~gVe~~ 213 (240)
T cd01948 194 IIALAHSLGLKVVAEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEEecCCH
Confidence 99999999999999887663
No 431
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=25.88 E-value=51 Score=32.48 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 89 YGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
.|+..+++++++-||++|+.||+|-+-
T Consensus 162 ~g~~~~~~~i~~~a~~~gi~vivD~a~ 188 (363)
T TIGR01437 162 QKSMLSVEDAAQVAQEHNLPLIVDAAA 188 (363)
T ss_pred cCCcCCHHHHHHHHHHcCCeEEEECCC
Confidence 466777889999999999999999975
No 432
>PRK05926 hypothetical protein; Provisional
Probab=25.86 E-value=78 Score=31.42 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=28.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+.|.--+.++..+.++.||+.||++-.=+++-|.-.
T Consensus 199 ~~p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~gEt 234 (370)
T PRK05926 199 LAPGRLSSQGFLEIHKTAHSLGIPSNATMLCYHRET 234 (370)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCcccCceEEeCCCC
Confidence 445455678999999999999999988787776543
No 433
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=25.79 E-value=74 Score=32.54 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 014892 92 EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+++++++.+-|+++||+||+|-
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~Da 218 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDA 218 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEEC
Confidence 7899999999999999999997
No 434
>PRK09082 methionine aminotransferase; Validated
Probab=25.78 E-value=63 Score=31.91 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
+.++++++++-|+++|+.||.|-++.+..
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y~~~~ 209 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVYEHIV 209 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhhhhhc
Confidence 46999999999999999999999986554
No 435
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=25.77 E-value=2.2e+02 Score=27.70 Aligned_cols=84 Identities=8% Similarity=0.068 Sum_probs=58.4
Q ss_pred CceeEEEeeecCCCCCCcHHHHHhhhhhHHHcCCCEEEeCCCC-CCC------------------CC-CCc------ccc
Q 014892 27 GREILFQGFNWESCKHDWWRNLERKVPDISKSGFTSVWLPPAT-HSF------------------AP-EGY------LPQ 80 (416)
Q Consensus 27 ~~~~~~q~f~~~~~~~G~~~gi~~~LdyLk~LGv~~I~L~Pi~-~~~------------------~~-~GY------~~~ 80 (416)
+.++.+|.--- ++.-|.++..+++..|.+.|++-|=++=.- +.. .+ +.+ ...
T Consensus 19 daPI~VQSMTn--T~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~ 96 (361)
T COG0821 19 DAPIVVQSMTN--TDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGV 96 (361)
T ss_pred CCceEEEeccC--CCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCc
Confidence 34456676543 344489999999999999999999886322 110 01 110 015
Q ss_pred cCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEE
Q 014892 81 NLYSLNS-SYGSEHLLKALLHKMKQHKVRAMAD 112 (416)
Q Consensus 81 d~~~id~-~~Gt~~d~~~Lv~~aH~~Gi~VilD 112 (416)
|=+.|+| ..|..+.|+.+|++|.++|+-|=.=
T Consensus 97 ~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIG 129 (361)
T COG0821 97 DKVRINPGNIGFKDRVREVVEAAKDKGIPIRIG 129 (361)
T ss_pred ceEEECCcccCcHHHHHHHHHHHHHcCCCEEEe
Confidence 5577887 5788889999999999999987653
No 436
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=25.74 E-value=70 Score=32.17 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQ 170 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~ 170 (416)
+.+||-+=-++|=.=|---|+|+|++-.+.+-- ..|..+ ..|.+...| |++.---++-..+
T Consensus 84 s~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv---~afe~w----r~~Ad~k~c------------CDyglhv~It~W~ 144 (522)
T KOG2584|consen 84 SVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLV---EAFEKW----REWADPKVC------------CDYGLHVGITWWS 144 (522)
T ss_pred chhhhhcccHHHhcCCceEEEEEecCCCCchHH---HHHHHH----HhhcCCcee------------eeeeeeEeeeecC
Confidence 368999999999999999999999986633211 112222 123332222 2333333455566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEeccc-C---CCcHHHHHHHHHh
Q 014892 171 HFVRKDIIAWLRWLRNTVGFQDFRFDFA-R---GYSAKYVKEYIEG 212 (416)
Q Consensus 171 ~~v~~~l~~~~~~w~~~~gvDGfRlD~a-~---~~~~~~~~~~~~~ 212 (416)
+.|.+.|. -.++++||.+|-+++| + .+..+.+-+....
T Consensus 145 ~~v~eem~----~l~~ekGvnsF~~fmayk~~~~v~d~~lye~l~~ 186 (522)
T KOG2584|consen 145 PSVKEEME----ILVKEKGVNSFKFFMAYKDLYMVRDSELYEALKV 186 (522)
T ss_pred cchHHHHH----HHhhhcCcceEEeeeeeccccccCHHHHHHHHHH
Confidence 77776654 3446999999999998 2 2344444444333
No 437
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=25.69 E-value=58 Score=32.18 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=28.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 83 YSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 83 ~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
-.++...|...+++++++.||++|+.||+|-+
T Consensus 163 ~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 163 TAASNTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred eCCCCCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 34566778888999999999999999999996
No 438
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=25.55 E-value=93 Score=30.10 Aligned_cols=63 Identities=5% Similarity=0.081 Sum_probs=44.1
Q ss_pred CCCCcHHHHHhh--hhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCC----HHHHHHHHHHHHHCCCEEEEEE
Q 014892 40 CKHDWWRNLERK--VPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGS----EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 40 ~~~G~~~gi~~~--LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt----~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+..|-+..++.. ...||++|-++|=|+= ||.+|..=.. .+=++++.++|++.||..+|.+
T Consensus 98 ~~~gRl~~ll~~~s~~rike~GadavK~Ll--------------yy~pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ 163 (325)
T TIGR01232 98 NAKGRLPDCLVEWSAKRLKEQGANAVKFLL--------------YYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEV 163 (325)
T ss_pred CCCCcCccccccccHHHHHHhCCCeEEEEE--------------EeCCCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 334555544444 4479999999998775 5555531111 3458899999999999999998
Q ss_pred ccc
Q 014892 114 VIN 116 (416)
Q Consensus 114 V~N 116 (416)
|.-
T Consensus 164 ltY 166 (325)
T TIGR01232 164 LTY 166 (325)
T ss_pred ecc
Confidence 764
No 439
>PRK02227 hypothetical protein; Provisional
Probab=25.28 E-value=1.4e+02 Score=27.52 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=35.5
Q ss_pred hhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 50 RKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 50 ~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+-++.+++.|+..+-| ....-.|=...|+. +.++|++||+.||++|+.+=|
T Consensus 135 ~l~~~a~~aGf~g~Ml----DTa~Kdg~~Lfd~l-------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 135 SLPAIAADAGFDGAML----DTAIKDGKSLFDHM-------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHcCCCEEEE----ecccCCCcchHhhC-------CHHHHHHHHHHHHHcccHhHh
Confidence 5567788999999887 22222233333322 478999999999999998755
No 440
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=25.11 E-value=2.9e+02 Score=25.85 Aligned_cols=33 Identities=3% Similarity=0.141 Sum_probs=26.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 81 NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 81 d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
|.+...|..-+..|||+=|.++.+.|=.|++-+
T Consensus 73 ~iptf~P~~~~daeFr~~v~aLnaeGkavllsL 105 (332)
T COG3469 73 DIPTFKPYNDPDAEFRAQVGALNAEGKAVLLSL 105 (332)
T ss_pred CCcccCcCCCCHHHHHHHHHHhhccCcEEEEEc
Confidence 445556666677999999999999998888843
No 441
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=25.08 E-value=1.3e+02 Score=28.15 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC-c----HHHHHHHHHhcCC
Q 014892 172 FVRKDIIAWLRWLRNTVGFQDFRFDFARGY-S----AKYVKEYIEGARP 215 (416)
Q Consensus 172 ~v~~~l~~~~~~w~~~~gvDGfRlD~a~~~-~----~~~~~~~~~~~~~ 215 (416)
..++.+++.+..+++++|+||+=+|--... + ..+++++++++++
T Consensus 96 ~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~ 144 (253)
T cd06544 96 SWVSNAVSSLTSIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKN 144 (253)
T ss_pred hHHHHHHHHHHHHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhh
Confidence 345556777788888999999999965322 1 2466777777763
No 442
>PRK05764 aspartate aminotransferase; Provisional
Probab=25.03 E-value=78 Score=31.22 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+++++|++.|+++|+.||.|-++..
T Consensus 183 ~~~~~~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 183 PEELEAIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred HHHHHHHHHHHHHCCcEEEEeccccc
Confidence 68999999999999999999987653
No 443
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=25.01 E-value=1.3e+02 Score=29.10 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=45.2
Q ss_pred cHHHHHhhhhhHHHcCC--CEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGF--TSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv--~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
|+..+.+.++..+.-++ ..|++..++ + .-|... +.++++++++.|.++|+-||.|-++.-....
T Consensus 131 d~~~l~~~l~~~~~~~~~~~~v~~~~p~-n--PtG~~~-----------~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~ 196 (363)
T PF00155_consen 131 DPEALEEALDELPSKGPRPKAVLICNPN-N--PTGSVL-----------SLEELRELAELAREYNIIIIVDEAYSDLIFG 196 (363)
T ss_dssp THHHHHHHHHTSHTTTETEEEEEEESSB-T--TTTBB-------------HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred cccccccccccccccccccceeeecccc-c--cccccc-----------ccccccchhhhhcccccceeeeeceeccccC
Confidence 68888888887776654 566654332 1 122211 5899999999999999999999998766554
No 444
>PRK09064 5-aminolevulinate synthase; Validated
Probab=24.96 E-value=1.2e+02 Score=30.20 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 90 GSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
|+..+++++++-|+++|+-||+|=+.-
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 192 GDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred ccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 455568999999999999999998864
No 445
>PRK07671 cystathionine beta-lyase; Provisional
Probab=24.92 E-value=65 Score=31.95 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
...|...+++++++.||++|+.||+|-++.
T Consensus 145 NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 145 NPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 345788899999999999999999998864
No 446
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=24.87 E-value=51 Score=33.70 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE
Q 014892 91 SEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
...+++++++.||++|+.||+|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 46789999999999999999994
No 447
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=24.80 E-value=78 Score=31.00 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc----CCCcHHHHHHHHHh
Q 014892 166 IDHTQHFVRKDIIAWLRWLRNTVGFQDFRFDFA----RGYSAKYVKEYIEG 212 (416)
Q Consensus 166 ln~~~~~v~~~l~~~~~~w~~~~gvDGfRlD~a----~~~~~~~~~~~~~~ 212 (416)
.|..+|+|++.-++ |++++|||||-++.= +.+-...++.+++.
T Consensus 52 Ydl~~p~v~~~Q~~----lA~~~GI~gF~~~~Ywf~gk~lLe~p~~~~l~~ 98 (345)
T PF14307_consen 52 YDLRDPEVMEKQAE----LAKEYGIDGFCFYHYWFNGKRLLEKPLENLLAS 98 (345)
T ss_pred ccCCCHHHHHHHHH----HHHHhCCCEEEEEeeecCCchHHHHHHHHHHhc
Confidence 35678999988884 556899999999853 33334444555544
No 448
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=24.79 E-value=1.3e+02 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 90 GSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 90 Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
|+-+...+.++.+++.|++|.+-+|++.
T Consensus 129 g~f~~v~~~i~~l~~~g~~v~v~~vv~~ 156 (358)
T TIGR02109 129 NAFEQKLAMARAVKAAGLPLTLNFVIHR 156 (358)
T ss_pred cHHHHHHHHHHHHHhCCCceEEEEEecc
Confidence 4456666777888999999988887753
No 449
>PLN02656 tyrosine transaminase
Probab=24.79 E-value=74 Score=31.78 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
.++++++++.|+++|+-||.|-++.+...
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLAF 216 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhccc
Confidence 58999999999999999999999887643
No 450
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=24.73 E-value=43 Score=33.39 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=27.4
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Q 014892 79 PQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 79 ~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
=-||-.|++|-|..+||+.|+++.|+-|-++=+=|
T Consensus 81 hpdy~~~~~R~GG~~D~~~L~~~g~~yna~~GvHV 115 (425)
T PF12905_consen 81 HPDYGNINKRAGGAEDFNTLLEEGRKYNAKFGVHV 115 (425)
T ss_dssp TT-TT-B-GGGTHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred CcchhhhccccccHHHHHHHHHHHHhhCCeEEEEE
Confidence 34677899999999999999999999987776644
No 451
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.73 E-value=1.7e+02 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccccCcCC
Q 014892 91 SEHLLKALLHKMKQH--KVRAMADIVINHRVGT 121 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~--Gi~VilD~V~NH~~~~ 121 (416)
+.+++.++|+.+++. ||.|-.|+++.+-+..
T Consensus 291 t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET 323 (455)
T PRK14335 291 TREHYLSLVGKLKASIPNVALSTDILIGFPGET 323 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCC
Confidence 578999999999999 9999999999976653
No 452
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=24.68 E-value=88 Score=30.47 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.++++++++.|+++|+.||.|-++-+..
T Consensus 161 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (356)
T PRK08056 161 RQLLQAIAERCKSLNIALILDEAFIDFI 188 (356)
T ss_pred HHHHHHHHHHHHhcCCEEEEecchhccC
Confidence 6889999999999999999999876543
No 453
>PRK08445 hypothetical protein; Provisional
Probab=24.67 E-value=1e+02 Score=30.35 Aligned_cols=34 Identities=3% Similarity=0.003 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+-|.--+.++..+-++.||+.||++..=+.+-|.
T Consensus 174 ~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 174 IAPKKLDSDRWLEVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCeeeeEEEecCC
Confidence 3355667788899999999999999999999985
No 454
>PRK05957 aspartate aminotransferase; Provisional
Probab=24.66 E-value=79 Score=31.29 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
+.++++++++.||++|+-||.|-++-+..
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 47899999999999999999999887654
No 455
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=24.61 E-value=54 Score=31.59 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
.-|...+++++++-|+++|+.||.|-+.
T Consensus 158 ~~G~~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 158 MDGDIAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CCCCCcCHHHHHHHHHHcCcEEEEECcc
Confidence 3456678999999999999999999985
No 456
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=24.57 E-value=67 Score=31.66 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
..|...+++++++-||++|+.||.|-+.
T Consensus 182 ~tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 182 MDGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred CCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 3456667899999999999999999985
No 457
>PLN02692 alpha-galactosidase
Probab=24.56 E-value=1.3e+02 Score=30.38 Aligned_cols=67 Identities=9% Similarity=0.100 Sum_probs=38.7
Q ss_pred HhcCCCeeEEecCCcCCCchhHHHHH--HHHHHHHHhCcccCCCCeEEEEecCCEEEEEE---CC-EEEEEEcCCC
Q 014892 325 ILMHPGIPSVFYDHFYDWGDSIHNQI--VKLMDVRRQQDIHSRSSIKILEAQSNLYSAII---GD-KVCMKIGDGS 394 (416)
Q Consensus 325 llt~pGiP~Iy~G~E~gw~~~l~~~~--~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R---~~-~~lvvinn~~ 394 (416)
|.++-..|+|.-+|--.-+.+.++.+ +.+|++-+. |.-..|.. +..++++-++.+ ++ .+++++|.++
T Consensus 283 LWai~~SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD-~lG~q~~~--v~~~~~~~vW~k~l~~g~~aVal~N~~~ 355 (412)
T PLN02692 283 IWAISKAPLLLGCDVRNMTKETMDIVANKEVIAVNQD-PLGVQAKK--VRMEGDLEIWAGPLSGYRVALLLLNRGP 355 (412)
T ss_pred HHHHHhCcceecCCcccCCHHHHHHhcCHHHhhhccC-ccccCcEE--EEecCCeEEEEEECCCCCEEEEEEECCC
Confidence 33445778888777655555555554 456666544 33334433 334566777766 43 4666677764
No 458
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.54 E-value=1.4e+02 Score=27.97 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.6
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRA 109 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~V 109 (416)
....+.+.++.-++-.+-.=|+.| ..||... | ++|+++++.|+++|++.
T Consensus 43 ~~~~a~~~~~~y~~~~~plgw~lp------ndgyg~~-y----------~~l~~~~~~~~~~g~~~ 91 (261)
T cd06596 43 TTDDARKVADKYKENDMPLGWMLP------NDGYGCG-Y----------ENLKEVVDYLHANGVET 91 (261)
T ss_pred chhhHHHHHHHHHhcCCCceeecc------CCCCcch-H----------HHHHHHHHHHHHcCCcc
Confidence 455688888888888887778887 2333322 1 88999999999999864
No 459
>PLN02721 threonine aldolase
Probab=24.54 E-value=81 Score=30.39 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
.+++++|++.||++|+.||+|-..
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 677999999999999999999753
No 460
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=24.46 E-value=75 Score=29.13 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE
Q 014892 89 YGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 89 ~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
-|+.+-.++||++||..|+.-++
T Consensus 240 ~GSl~r~~eli~qAh~lGl~AVI 262 (321)
T COG1441 240 TGSLQRVRELVQQAHALGLTAVI 262 (321)
T ss_pred hhhHHHHHHHHHHHHhcCceeEe
Confidence 37889999999999999998776
No 461
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=24.44 E-value=2.7e+02 Score=26.23 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=49.9
Q ss_pred CcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 43 DWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 43 G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
....-|.+-...+|..|.+.+-..+..+..+...++ -. .++.++-|.+++++.|+-|+-.++
T Consensus 56 Es~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQ-----Gl-----ge~gL~~l~~a~~~~Gl~vvtEvm 117 (286)
T COG2876 56 ESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQ-----GL-----GEEGLKLLKRAADETGLPVVTEVM 117 (286)
T ss_pred CCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccc-----cc-----CHHHHHHHHHHHHHcCCeeEEEec
Confidence 478889999999999999999999988876432222 22 248899999999999999998763
No 462
>PRK06348 aspartate aminotransferase; Provisional
Probab=24.44 E-value=82 Score=31.07 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+.+++++|++.|+++|+-||.|-++.+...
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 209 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFSF 209 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEeccccccee
Confidence 478999999999999999999998876543
No 463
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=24.43 E-value=60 Score=29.98 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=27.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 81 NLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 81 d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
|...|.+.+|+.+..+++++.++++++.||+|-.
T Consensus 79 d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~ 112 (254)
T cd01171 79 DAVVIGPGLGRDEEAAEILEKALAKDKPLVLDAD 112 (254)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcH
Confidence 3445667788878899999999999999999954
No 464
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=24.42 E-value=66 Score=32.04 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 86 NSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 86 d~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
....|...+++++++.||++|+.||+|-++.
T Consensus 156 ~NptG~v~dl~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 156 SNPLTELADIAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred CCCCCCcCCHHHHHHHHHHcCCEEEEECCCc
Confidence 3456777889999999999999999999853
No 465
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=24.38 E-value=2.5e+02 Score=26.52 Aligned_cols=26 Identities=4% Similarity=-0.197 Sum_probs=23.9
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPAT 69 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~ 69 (416)
..+..++...+.+++|+++|.++|++
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 48899999999999999999999865
No 466
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=24.32 E-value=67 Score=32.22 Aligned_cols=32 Identities=13% Similarity=0.023 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+....|...+++++++.||++|+.||+|-++-
T Consensus 164 p~Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 164 PSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred CCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 34457888899999999999999999999864
No 467
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=24.24 E-value=1.2e+02 Score=27.57 Aligned_cols=151 Identities=10% Similarity=0.071 Sum_probs=86.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEe-CCCCCCCC-----------CCCcccccCCCCC-------------------CCCCCH
Q 014892 44 WWRNLERKVPDISKSGFTSVWL-PPATHSFA-----------PEGYLPQNLYSLN-------------------SSYGSE 92 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L-~Pi~~~~~-----------~~GY~~~d~~~id-------------------~~~Gt~ 92 (416)
++...++-+..+.+. ++.|+. +|+..+.+ ++..=+.|....| .-....
T Consensus 14 ~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~ 92 (217)
T COG0269 14 DLEEAIEIAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADD 92 (217)
T ss_pred CHHHHHHHHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCH
Confidence 688888888888888 888888 56655431 3555556655555 112346
Q ss_pred HHHHHHHHHHHHCCCEEEEEEccccCcCCCCCCCCcccccCCCCCCCCCCceecCCCCCCCCCCCCCCCCCCcCCCCCHH
Q 014892 93 HLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIPLSWDEHAVTSCTGGLGNGSTGDNFHGVPNIDHTQHF 172 (416)
Q Consensus 93 ~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~ 172 (416)
+..+..+++||+.|+.|++|+.-|..-..- ..+... .... ...++-+.-..-.+ ..+.
T Consensus 93 ~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~------~~~l~~----~gvd-~~~~H~g~D~q~~G--------~~~~--- 150 (217)
T COG0269 93 ATIKKAIKVAKEYGKEVQIDLIGVWDPEQR------AKWLKE----LGVD-QVILHRGRDAQAAG--------KSWG--- 150 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEeecCCCHHHH------HHHHHH----hCCC-EEEEEecccHhhcC--------CCcc---
Confidence 789999999999999999999877532211 011110 0000 00000000000000 0110
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCcHHHHHHHHHhcCCceEEEccc
Q 014892 173 VRKDIIAWLRWLRNTVGFQDFRFDFARGYSAKYVKEYIEGARPIFSVGEYW 223 (416)
Q Consensus 173 v~~~l~~~~~~w~~~~gvDGfRlD~a~~~~~~~~~~~~~~~~~~~~vgE~~ 223 (416)
...++.++... . .|+++-.+.++.++-+..+...--..+++|-..
T Consensus 151 --~~~l~~ik~~~-~---~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraI 195 (217)
T COG0269 151 --EDDLEKIKKLS-D---LGAKVAVAGGITPEDIPLFKGIGADIVIVGRAI 195 (217)
T ss_pred --HHHHHHHHHhh-c---cCceEEEecCCCHHHHHHHhcCCCCEEEECchh
Confidence 12333344443 2 358999999999999888876532367777644
No 468
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=24.23 E-value=59 Score=31.27 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=26.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 86 NSSYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 86 d~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
....|..++++++++-||++|+.|++|-+...
T Consensus 158 ~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 158 TTDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 34467788899999999999999999998643
No 469
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=24.19 E-value=4.2e+02 Score=24.44 Aligned_cols=68 Identities=3% Similarity=-0.107 Sum_probs=46.8
Q ss_pred EEEeeecCCCC----CCcHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCC
Q 014892 31 LFQGFNWESCK----HDWWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHK 106 (416)
Q Consensus 31 ~~q~f~~~~~~----~G~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~G 106 (416)
.+++|..+... ..+...+.+-|++..+.|++.|-++=-+..+ .+. -...+.|+++|++|.++|
T Consensus 70 ~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~--------~~~-----~~~~~~l~~ai~~A~~~G 136 (247)
T cd07491 70 VIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKP--------EDN-----DNDINELENAIKEALDRG 136 (247)
T ss_pred EEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccc--------ccc-----ccchHHHHHHHHHHHhCC
Confidence 56666644321 3467789999999999999999887322111 111 124578999999999999
Q ss_pred CEEEE
Q 014892 107 VRAMA 111 (416)
Q Consensus 107 i~Vil 111 (416)
|-|+.
T Consensus 137 ilvva 141 (247)
T cd07491 137 ILLFC 141 (247)
T ss_pred eEEEE
Confidence 87775
No 470
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.17 E-value=1.5e+02 Score=26.64 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=48.4
Q ss_pred cHHHHHhhhhhHHHcCCCEEE-----eCCCCCCC-----------CCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCC
Q 014892 44 WWRNLERKVPDISKSGFTSVW-----LPPATHSF-----------APEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKV 107 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~-----L~Pi~~~~-----------~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi 107 (416)
+|..+++.+.....-|++.=- -.||+... +.||+-+.|. .+||-..|-++|+++||
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--------PpEEa~~~Rne~~k~gi 149 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--------PPEEAETLRNEARKHGI 149 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--------ChHHHHHHHHHHHhcCc
Confidence 899999999999999998632 24666433 4678777762 47888899999999999
Q ss_pred EEEEEE
Q 014892 108 RAMADI 113 (416)
Q Consensus 108 ~VilD~ 113 (416)
.+|.=+
T Consensus 150 slvpLv 155 (268)
T KOG4175|consen 150 SLVPLV 155 (268)
T ss_pred eEEEee
Confidence 998744
No 471
>PRK08064 cystathionine beta-lyase; Provisional
Probab=24.15 E-value=72 Score=31.77 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+....|...+++++++.||++|+.||+|-.+
T Consensus 147 p~NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 147 PSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred CCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 3445788889999999999999999999763
No 472
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=24.13 E-value=62 Score=32.03 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
+.+|+..+++++++-||++|+.||+|-+
T Consensus 170 ~~~~~~~~~~~I~~l~~~~~~~li~D~a 197 (402)
T cd00378 170 SAYPRPIDFKRFREIADEVGAYLLVDMA 197 (402)
T ss_pred cccCCCcCHHHHHHHHHhcCCEEEEEcc
Confidence 4556666799999999999999999987
No 473
>PRK06225 aspartate aminotransferase; Provisional
Probab=24.12 E-value=74 Score=31.29 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
.++++++++.|+++|+-||.|-++.
T Consensus 176 ~~~~~~i~~~a~~~~~~ii~De~y~ 200 (380)
T PRK06225 176 EEEIKEFAEIARDNDAFLLHDCTYR 200 (380)
T ss_pred HHHHHHHHHHHHHCCcEEEEehhHH
Confidence 7899999999999999999998764
No 474
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=24.11 E-value=65 Score=31.69 Aligned_cols=30 Identities=17% Similarity=0.021 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
+..|..+++++|++-|+++|+-||.|-+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 345667889999999999999999999974
No 475
>PTZ00413 lipoate synthase; Provisional
Probab=24.02 E-value=2.8e+02 Score=27.76 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=44.5
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~Vil 111 (416)
+.+.+++.+..|+++||+.+=|.-.... +..-+-|. +|=++++|+.+-+.+-+.|.+-+.
T Consensus 308 T~eEvie~m~dLrelGVDivtIGQYL~P-s~~h~~V~-------~yv~P~~F~~~~~~a~~~Gf~~v~ 367 (398)
T PTZ00413 308 TEEEVRQTLRDLRTAGVSAVTLGQYLQP-TKTRLKVS-------RYAHPKEFEMWEEEAMKMGFLYCA 367 (398)
T ss_pred CHHHHHHHHHHHHHcCCcEEeeccccCC-CcccCCce-------eccCHHHHHHHHHHHHHcCCceEE
Confidence 7888999999999999998866332211 22222222 566899999999999999988765
No 476
>PRK07683 aminotransferase A; Validated
Probab=24.01 E-value=82 Score=31.17 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+.++++++++.|+++|+-||.|-++-..
T Consensus 179 s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 179 SKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 3789999999999999999999988644
No 477
>PTZ00376 aspartate aminotransferase; Provisional
Probab=24.00 E-value=89 Score=31.13 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
+.+++++|++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 479999999999999999999999987655
No 478
>PRK13578 ornithine decarboxylase; Provisional
Probab=23.97 E-value=1.6e+02 Score=32.09 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=34.2
Q ss_pred HHHHHHhcCC-CeeEEecCCcCCCchhHHHHHHHHHHHHHhCcccC
Q 014892 320 EGYAYILMHP-GIPSVFYDHFYDWGDSIHNQIVKLMDVRRQQDIHS 364 (416)
Q Consensus 320 ~a~a~llt~p-GiP~Iy~G~E~gw~~~l~~~~~~Li~lR~~~~~l~ 364 (416)
.++.+++-.| |||+|.-|+.+ +.+..++++.|.+.=+..|-+.
T Consensus 652 IaAe~i~PYPPGIPll~PGE~i--t~~~i~yl~~l~~~~~~~pgf~ 695 (720)
T PRK13578 652 IAAEGALPYPPGVLCVVPGEIW--GGAVQRYFLALEEGINLLPGFA 695 (720)
T ss_pred EEeeeeEecCCCceeeCCcccc--CHHHHHHHHHHHHHHhhCCCCC
Confidence 3444555564 99999999997 6779999999999999988664
No 479
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=23.84 E-value=1.9e+02 Score=28.75 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=45.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcCC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGT 121 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~~ 121 (416)
||+|+++.|.-+.+= +.|.|-+.-.+| .-+|| |.++.+++++-..++|+=.++|+-+--.+..
T Consensus 158 df~~mla~L~~a~~~--~vvLLH~CcHNP----------TG~D~---t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G 220 (396)
T COG1448 158 DFDGMLADLKTAPEG--SVVLLHGCCHNP----------TGIDP---TEEQWQELADLIKERGLIPFFDIAYQGFADG 220 (396)
T ss_pred cHHHHHHHHHhCCCC--CEEEEecCCCCC----------CCCCC---CHHHHHHHHHHHHHcCCeeeeehhhhhhccc
Confidence 788877766555443 345555655554 34555 6899999999999999999999988755553
No 480
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=23.84 E-value=2.4e+02 Score=27.82 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=41.8
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
|++.+.+.|. .-.+.+|++.|++.. .|.- .-+.+.++++.+-|+++|+-+|+|=|.-..+.
T Consensus 166 d~~~le~~l~---~~~~~~v~~ep~~~~---~G~~----------~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~ 226 (400)
T PTZ00125 166 DVEALEKLLQ---DPNVAAFIVEPIQGE---AGVI----------VPDDGYLKQVYELCKKYNVLLIVDEIQTGLGR 226 (400)
T ss_pred CHHHHHHHhC---CCCeEEEEEcCccCC---CCCc----------cCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 5666666553 124778888887322 2211 11356799999999999999999999865544
No 481
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=23.78 E-value=72 Score=31.79 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
...|...+++++++-||++|+.||+|-..-
T Consensus 155 Np~G~v~dl~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 155 NPTMKLIDMERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECCCc
Confidence 345777889999999999999999999854
No 482
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=23.75 E-value=1.3e+02 Score=28.00 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=48.3
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC-------------------CCC---C------cccccCCCCCC-CCCCHHH
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF-------------------APE---G------YLPQNLYSLNS-SYGSEHL 94 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~-------------------~~~---G------Y~~~d~~~id~-~~Gt~~d 94 (416)
+.+..++.+..|+++|+..|+= |+.... +-+ . -...|...+++ ..|+..+
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~ 219 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQ-PLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTK 219 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEEC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHH
Confidence 5889999999999999999985 332211 000 0 11244445554 4599999
Q ss_pred HHHHHHHHHHCCCEEEE
Q 014892 95 LKALLHKMKQHKVRAMA 111 (416)
Q Consensus 95 ~~~Lv~~aH~~Gi~Vil 111 (416)
.+++++.|+++|+++++
T Consensus 220 ~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 220 AQRVLAVAEALGLPVMV 236 (265)
T ss_pred HHHHHHHHHHcCCcEEe
Confidence 99999999999999987
No 483
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.74 E-value=1.7e+02 Score=29.86 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=29.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHC--CCEEEEEEccccCcCC
Q 014892 85 LNSSYGSEHLLKALLHKMKQH--KVRAMADIVINHRVGT 121 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~--Gi~VilD~V~NH~~~~ 121 (416)
++..+ +.++++++|+.++++ ||.|..|+++.+-+..
T Consensus 276 m~R~~-t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET 313 (445)
T PRK14340 276 MNRGH-TIEEYLEKIALIRSAIPGVTLSTDLIAGFCGET 313 (445)
T ss_pred cCCCC-CHHHHHHHHHHHHHhCCCCEEeccEEEECCCCC
Confidence 33433 688999999999999 9999999999876653
No 484
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.73 E-value=69 Score=32.49 Aligned_cols=82 Identities=9% Similarity=0.057 Sum_probs=47.8
Q ss_pred eccCceeEEEeeecCCCCCCcHHHHHhhhh-hHHHcCCCEEEeCCCCCCCC------CCCcccccCCCCCCCCCCHHHHH
Q 014892 24 IRNGREILFQGFNWESCKHDWWRNLERKVP-DISKSGFTSVWLPPATHSFA------PEGYLPQNLYSLNSSYGSEHLLK 96 (416)
Q Consensus 24 ~~~~~~~~~q~f~~~~~~~G~~~gi~~~Ld-yLk~LGv~~I~L~Pi~~~~~------~~GY~~~d~~~id~~~Gt~~d~~ 96 (416)
+.+||.|+..-..+ -+...-+. .++.+|++.+++-+- ... ...=...-.-.+....|...|++
T Consensus 100 l~~Gd~Vi~~~~~y--------~~t~~~~~~~l~~~Gi~v~~vd~~--d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~ 169 (433)
T PRK08134 100 MGAGSHIVASSALY--------GGSHNLLHYTLRRFGIETTFVKPG--DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIP 169 (433)
T ss_pred hCCCCEEEEeCCcc--------HHHHHHHHHHHhhCCeEEEEECCC--CHHHHHHhcCCCCeEEEEECCCcccCcccCHH
Confidence 45677666654432 23333332 357788888887652 100 00000111112333445568999
Q ss_pred HHHHHHHHCCCEEEEEEcc
Q 014892 97 ALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 97 ~Lv~~aH~~Gi~VilD~V~ 115 (416)
++.+.||++|+.||+|-+.
T Consensus 170 ~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 170 TVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHHHHHcCCEEEEECCC
Confidence 9999999999999999874
No 485
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=23.70 E-value=67 Score=31.33 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=27.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEEc
Q 014892 84 SLNSSYGSEHLLKALLHKMKQHKVRAMADIV 114 (416)
Q Consensus 84 ~id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V 114 (416)
.++..-|..-+++++++.||++|+-||+|.+
T Consensus 137 ~~~~~tG~~~~i~~I~~l~~~~g~~livD~~ 167 (363)
T TIGR02326 137 HCETTTGILNPIEAVAKLAHRHGKVTIVDAM 167 (363)
T ss_pred eecCCccccCcHHHHHHHHHHcCCEEEEEcc
Confidence 3456678888999999999999999999976
No 486
>PRK07503 methionine gamma-lyase; Provisional
Probab=23.64 E-value=68 Score=32.13 Aligned_cols=30 Identities=7% Similarity=-0.085 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccc
Q 014892 87 SSYGSEHLLKALLHKMKQHKVRAMADIVIN 116 (416)
Q Consensus 87 ~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~N 116 (416)
...|...+++++++.||++|+.||.|-.+-
T Consensus 161 NPtG~~~di~~I~~la~~~gi~lIvD~a~a 190 (403)
T PRK07503 161 NPNMRLVDIAAVAEIAHGAGAKVVVDNTYC 190 (403)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 445778889999999999999999999864
No 487
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=23.62 E-value=98 Score=29.74 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=26.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 85 LNSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 85 id~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+++..|...+++++++.||++|+-+|+|-+.
T Consensus 134 ~~~~~G~~~~~~~i~~l~~~~~~~livD~~~ 164 (355)
T TIGR03301 134 HETTTGILNPLEAIAKVARSHGAVLIVDAMS 164 (355)
T ss_pred cCCcccchhHHHHHHHHHHHcCCEEEEEecc
Confidence 4456789999999999999999999999753
No 488
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.60 E-value=87 Score=28.76 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 014892 92 EHLLKALLHKMKQHKVRAMA 111 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~Vil 111 (416)
.+.++++|++||++|++|.+
T Consensus 184 ~~~l~~~v~~a~~~Gl~vr~ 203 (228)
T cd08577 184 KEKLKSIIDKAHARGKKVRF 203 (228)
T ss_pred HHHHHHHHHHHHHCCCEEEE
Confidence 35699999999999999987
No 489
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=23.57 E-value=95 Score=29.07 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 014892 92 EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+++++|++.||..||.+++.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 5779999999999999999987
No 490
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=23.52 E-value=1.2e+02 Score=23.82 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=34.6
Q ss_pred HHhhhhhHHHcCCCEEEeCCCCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHC----CC-EEEEEEccccCc
Q 014892 48 LERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQH----KV-RAMADIVINHRV 119 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~Pi~~~~~~~GY~~~d~~~id~~~Gt~~d~~~Lv~~aH~~----Gi-~VilD~V~NH~~ 119 (416)
+.+-+..|++-|++ ..+.|.. ..|. |..+++-++|++||+. |. ||+..+-+++--
T Consensus 21 Va~~i~~l~~sGl~-y~~~pm~-------------T~IE---Ge~dev~~~i~~~~e~~~~~G~~Rv~t~ikid~R~ 80 (97)
T TIGR00106 21 VAAAIEVLKESGLK-YELHPMG-------------TLIE---GDLDELFEAIKAIHEAVLEKGSDRVYTSIKIDTRT 80 (97)
T ss_pred HHHHHHHHHHcCCC-eEecCCc-------------cEEe---cCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEecC
Confidence 44556667777663 2444422 1222 6788877777777765 65 999988887543
No 491
>PLN02187 rooty/superroot1
Probab=23.45 E-value=89 Score=31.94 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCc
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRV 119 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~ 119 (416)
.++++++++.|+++|+-||.|=++.+..
T Consensus 223 ~e~l~~i~~~a~~~~i~iI~DE~Y~~l~ 250 (462)
T PLN02187 223 HDHLKKVAETARKLGIMVISDEVYDRTI 250 (462)
T ss_pred HHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 7899999999999999999999988754
No 492
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=23.33 E-value=99 Score=30.23 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 014892 92 EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
.+++++|++.||..||.+++.+
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe
Confidence 5789999999999999999987
No 493
>PLN02808 alpha-galactosidase
Probab=23.31 E-value=1.5e+02 Score=29.66 Aligned_cols=68 Identities=9% Similarity=0.058 Sum_probs=40.5
Q ss_pred HhcCCCeeEEecCCcCCCchhHHHHH--HHHHHHHHhCcccCCCCeEEEEecCCEEEEEE----CCEEEEEEcCCCC
Q 014892 325 ILMHPGIPSVFYDHFYDWGDSIHNQI--VKLMDVRRQQDIHSRSSIKILEAQSNLYSAII----GDKVCMKIGDGSW 395 (416)
Q Consensus 325 llt~pGiP~Iy~G~E~gw~~~l~~~~--~~Li~lR~~~~~l~~G~~~~~~~~~~~~~~~R----~~~~lvvinn~~~ 395 (416)
|.++-..|+|.-+|--.-+.+.++.+ +.||+|-+. |.-..|.. +..++++-++.+ ++..|+++|.++.
T Consensus 259 LWam~~SPLiiG~DL~~~~~~~l~iLtNkevIAINQD-~lG~~~~~--v~~~~~~~vW~k~L~~g~~aVal~N~~~~ 332 (386)
T PLN02808 259 IWALAKAPLLIGCDIRSMDNETFELLSNKEVIAVNQD-KLGVQGKK--VKKDGDLEVWAGPLSKKRVAVVLWNRGSS 332 (386)
T ss_pred HHHHHhCcceecCCcCcCCHHHHHHhcCHHHHhhcCC-ccccCcEE--EEecCCeEEEEEECCCCCEEEEEEECCCC
Confidence 33445778888887655555555554 467777554 23333332 334566778876 4566777787653
No 494
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=23.27 E-value=59 Score=32.17 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEcccc
Q 014892 88 SYGSEHLLKALLHKMKQHKVRAMADIVINH 117 (416)
Q Consensus 88 ~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~NH 117 (416)
.+|...+++++++.|+++|+.||.|-+.-+
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~ 159 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAV 159 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCcc
Confidence 478889999999999999999999998754
No 495
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=23.27 E-value=90 Score=31.83 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 014892 92 EHLLKALLHKMKQHKVRAMADI 113 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~ 113 (416)
+++++++.+-|+++||.||+|-
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~Da 211 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDA 211 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEc
Confidence 4899999999999999999997
No 496
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=23.25 E-value=90 Score=30.96 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEccccCcC
Q 014892 92 EHLLKALLHKMKQHKVRAMADIVINHRVG 120 (416)
Q Consensus 92 ~~d~~~Lv~~aH~~Gi~VilD~V~NH~~~ 120 (416)
.+++++|++.|+++|+.||.|-++.+...
T Consensus 187 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 215 (401)
T TIGR01264 187 RQHLEEILAVAERQCLPIIADEIYGDMVF 215 (401)
T ss_pred HHHHHHHHHHHHHCCCEEEEEhhhhhhcc
Confidence 58999999999999999999999886553
No 497
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.21 E-value=2.6e+02 Score=26.20 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred cHHHHHhhhhhHHHcCCCEEEeCCCCCCC---------------------CCCCcccccCCCCCCCCC-CHHHHHHHHHH
Q 014892 44 WWRNLERKVPDISKSGFTSVWLPPATHSF---------------------APEGYLPQNLYSLNSSYG-SEHLLKALLHK 101 (416)
Q Consensus 44 ~~~gi~~~LdyLk~LGv~~I~L~Pi~~~~---------------------~~~GY~~~d~~~id~~~G-t~~d~~~Lv~~ 101 (416)
.++-+.+.++.-+.||...|-+.|=+... ..-.-.+.+--.....+| +.+++++|+++
T Consensus 86 sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 86 SLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHh
Q ss_pred HHH-CCCEEEEEE
Q 014892 102 MKQ-HKVRAMADI 113 (416)
Q Consensus 102 aH~-~Gi~VilD~ 113 (416)
+.. ..++|++|.
T Consensus 166 ~~~~~~lg~~lDt 178 (274)
T TIGR00587 166 IVDKRRIGVCLDT 178 (274)
T ss_pred cCCCCceEEEEEh
No 498
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=23.10 E-value=67 Score=31.36 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Q 014892 86 NSSYGSEHLLKALLHKMKQHKVRAMADIVI 115 (416)
Q Consensus 86 d~~~Gt~~d~~~Lv~~aH~~Gi~VilD~V~ 115 (416)
+...|...+++++++.|+++|+.|++|...
T Consensus 149 ~~~tG~~~~~~~i~~~~~~~~~~li~D~a~ 178 (373)
T cd06453 149 SNVLGTINPVKEIGEIAHEAGVPVLVDGAQ 178 (373)
T ss_pred ccccCCcCCHHHHHHHHHHcCCEEEEEhhh
Confidence 344678888999999999999999999753
No 499
>PRK08175 aminotransferase; Validated
Probab=23.06 E-value=86 Score=31.08 Aligned_cols=28 Identities=11% Similarity=0.148 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHCCCEEEEEEccccC
Q 014892 91 SEHLLKALLHKMKQHKVRAMADIVINHR 118 (416)
Q Consensus 91 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~ 118 (416)
+.++++++++.|+++|+.||.|-++-+.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l 209 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADI 209 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence 5789999999999999999999887644
No 500
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=23.05 E-value=2.5e+02 Score=24.22 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=36.9
Q ss_pred HHhhhhhHHHcCCCEEEeC--CCCCCC--CCCCcccccCCCCC---CCCCCHHHHHHHHHHHHHC----CCEEEE
Q 014892 48 LERKVPDISKSGFTSVWLP--PATHSF--APEGYLPQNLYSLN---SSYGSEHLLKALLHKMKQH----KVRAMA 111 (416)
Q Consensus 48 i~~~LdyLk~LGv~~I~L~--Pi~~~~--~~~GY~~~d~~~id---~~~Gt~~d~~~Lv~~aH~~----Gi~Vil 111 (416)
+.+-+..|++.||++|--. |-++.. ...|....++-..| |.....++|.++++++.+. |-+|++
T Consensus 29 ~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~V 103 (166)
T PTZ00242 29 LPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAV 103 (166)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 3366899999999999954 322211 13455544433223 2222235777777877655 666655
Done!