Query 014893
Match_columns 416
No_of_seqs 174 out of 1531
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 01:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 1.3E-52 2.8E-57 411.6 36.0 304 101-415 4-308 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 1.9E-44 4E-49 360.9 32.6 280 111-398 12-314 (328)
3 TIGR00841 bass bile acid trans 100.0 3.5E-42 7.5E-47 338.7 30.9 272 130-415 4-279 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 7.3E-39 1.6E-43 318.6 33.0 298 109-413 1-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 1.7E-33 3.6E-38 275.9 34.1 308 96-411 1-329 (342)
6 PF01758 SBF: Sodium Bile acid 100.0 1.6E-30 3.4E-35 240.8 17.7 180 139-322 2-186 (187)
7 KOG2718 Na+-bile acid cotransp 100.0 3.7E-29 8.1E-34 250.7 12.3 279 110-398 87-367 (371)
8 KOG4821 Predicted Na+-dependen 99.1 6.7E-11 1.4E-15 109.8 6.3 192 99-291 12-222 (287)
9 TIGR00946 2a69 he Auxin Efflux 98.9 4.6E-08 9.9E-13 97.8 15.7 143 102-252 174-320 (321)
10 PRK09903 putative transporter 98.7 2.4E-07 5.2E-12 92.6 15.0 142 102-252 165-310 (314)
11 COG0679 Predicted permeases [G 98.6 2.1E-06 4.6E-11 85.8 16.2 148 99-253 157-308 (311)
12 PRK12460 2-keto-3-deoxyglucona 98.5 8E-06 1.7E-10 81.0 17.7 276 112-415 16-307 (312)
13 PF03812 KdgT: 2-keto-3-deoxyg 98.4 9E-05 2E-09 73.4 21.3 285 102-416 2-314 (314)
14 PF03547 Mem_trans: Membrane t 98.3 1.1E-05 2.4E-10 82.2 15.5 139 105-249 240-385 (385)
15 KOG2718 Na+-bile acid cotransp 98.1 1.2E-06 2.5E-11 89.1 2.4 228 141-385 50-286 (371)
16 TIGR00793 kdgT 2-keto-3-deoxyg 97.9 0.00053 1.1E-08 67.8 15.8 274 113-416 17-314 (314)
17 PRK05274 2-keto-3-deoxyglucona 97.6 0.0032 6.9E-08 63.5 17.7 273 112-414 18-314 (326)
18 PF05145 AmoA: Putative ammoni 97.5 0.12 2.7E-06 52.0 29.4 259 138-415 28-317 (318)
19 COG3180 AbrB Putative ammonia 97.3 0.23 5.1E-06 50.5 25.3 100 146-254 69-169 (352)
20 PLN03159 cation/H(+) antiporte 97.2 0.32 7E-06 55.2 28.4 108 138-251 109-224 (832)
21 TIGR00932 2a37 transporter, mo 96.8 0.6 1.3E-05 45.4 24.1 145 138-293 48-198 (273)
22 COG0475 KefB Kef-type K+ trans 96.3 0.98 2.1E-05 46.9 21.8 150 138-295 63-216 (397)
23 PRK05326 potassium/proton anti 96.0 0.6 1.3E-05 50.5 19.6 173 111-293 33-216 (562)
24 TIGR03082 Gneg_AbrB_dup membra 95.8 0.64 1.4E-05 41.9 15.9 105 138-251 50-155 (156)
25 PRK03562 glutathione-regulated 94.9 6 0.00013 43.6 22.6 97 139-243 62-162 (621)
26 PRK10669 putative cation:proto 94.9 6.5 0.00014 42.5 22.6 102 138-247 62-167 (558)
27 TIGR00844 c_cpa1 na(+)/h(+) an 94.7 5.4 0.00012 45.0 21.6 55 111-165 41-103 (810)
28 TIGR00946 2a69 he Auxin Efflux 94.7 0.42 9.1E-06 47.8 12.0 119 262-387 4-127 (321)
29 PF03601 Cons_hypoth698: Conse 94.4 6.2 0.00013 39.6 21.7 134 111-252 29-169 (305)
30 TIGR00831 a_cpa1 Na+/H+ antipo 93.5 13 0.00027 40.1 21.7 52 112-163 26-78 (525)
31 PF03547 Mem_trans: Membrane t 93.5 1.2 2.5E-05 45.4 12.7 107 271-386 8-120 (385)
32 PF04172 LrgB: LrgB-like famil 93.3 0.81 1.8E-05 43.6 10.4 92 154-252 67-158 (215)
33 PRK10711 hypothetical protein; 92.9 1.1 2.5E-05 43.1 10.8 92 154-252 78-169 (231)
34 PF05145 AmoA: Putative ammoni 92.8 5.4 0.00012 40.2 16.1 105 140-253 209-314 (318)
35 TIGR00659 conserved hypothetic 92.7 1.2 2.5E-05 42.9 10.5 92 154-252 77-168 (226)
36 PRK04288 antiholin-like protei 92.5 1.3 2.9E-05 42.6 10.7 89 154-252 83-174 (232)
37 PRK12460 2-keto-3-deoxyglucona 92.0 2.1 4.5E-05 43.1 11.7 131 114-253 172-304 (312)
38 PF03601 Cons_hypoth698: Conse 91.9 1.5 3.2E-05 44.0 10.7 105 271-382 28-136 (305)
39 COG2855 Predicted membrane pro 91.6 17 0.00038 36.9 19.3 132 111-252 40-178 (334)
40 PRK03659 glutathione-regulated 91.4 26 0.00056 38.5 27.1 96 139-242 62-161 (601)
41 PF03956 DUF340: Membrane prot 90.8 13 0.00029 34.7 15.2 123 114-252 4-138 (191)
42 COG1346 LrgB Putative effector 88.6 4.9 0.00011 38.6 10.5 89 154-252 80-171 (230)
43 TIGR00210 gltS sodium--glutama 88.0 37 0.0008 35.4 27.3 184 95-287 17-239 (398)
44 PF06826 Asp-Al_Ex: Predicted 87.9 8 0.00017 35.5 11.2 55 324-383 82-136 (169)
45 PF03977 OAD_beta: Na+-transpo 87.5 36 0.00077 34.7 19.4 100 144-254 75-175 (360)
46 COG0786 GltS Na+/glutamate sym 85.0 52 0.0011 34.3 22.0 191 89-288 13-243 (404)
47 TIGR03136 malonate_biotin Na+- 83.6 58 0.0013 33.7 18.3 100 144-254 111-212 (399)
48 TIGR00698 conserved hypothetic 82.9 58 0.0013 33.2 20.0 135 111-253 34-176 (335)
49 COG3180 AbrB Putative ammonia 82.3 62 0.0013 33.2 15.4 104 140-252 242-346 (352)
50 PRK02830 Na(+)-translocating N 81.8 48 0.001 31.4 13.5 79 229-307 41-127 (202)
51 TIGR00698 conserved hypothetic 80.0 17 0.00036 37.1 10.6 102 273-381 35-141 (335)
52 COG0679 Predicted permeases [G 79.9 68 0.0015 32.0 27.9 234 138-390 42-285 (311)
53 PF00999 Na_H_Exchanger: Sodiu 79.5 0.18 3.8E-06 51.2 -3.8 147 135-285 50-199 (380)
54 TIGR00840 b_cpa1 sodium/hydrog 78.8 1.1E+02 0.0023 33.5 21.6 74 112-185 39-118 (559)
55 PRK03562 glutathione-regulated 78.3 46 0.00099 36.7 14.2 101 140-252 273-379 (621)
56 PRK04972 putative transporter; 77.6 17 0.00037 39.5 10.5 81 324-410 471-556 (558)
57 TIGR01943 rnfA electron transp 76.8 66 0.0014 30.1 13.0 77 229-307 40-116 (190)
58 TIGR03802 Asp_Ala_antiprt aspa 74.2 26 0.00056 38.2 10.7 57 324-385 476-532 (562)
59 PF03616 Glt_symporter: Sodium 72.9 1.2E+02 0.0026 31.3 25.6 185 95-287 17-241 (368)
60 PRK15477 oxaloacetate decarbox 70.9 1.4E+02 0.003 31.1 15.9 104 145-253 141-245 (433)
61 PRK15476 oxaloacetate decarbox 70.8 1.4E+02 0.003 31.1 15.9 104 145-253 141-245 (433)
62 PRK09903 putative transporter 70.1 1.2E+02 0.0026 30.1 28.1 251 138-405 42-304 (314)
63 COG2855 Predicted membrane pro 69.8 43 0.00093 34.1 10.3 80 273-355 41-121 (334)
64 PRK15475 oxaloacetate decarbox 69.5 1.5E+02 0.0032 30.9 15.9 104 145-253 141-245 (433)
65 PRK03659 glutathione-regulated 68.2 1.9E+02 0.0041 31.7 15.9 103 140-252 270-376 (601)
66 TIGR01109 Na_pump_decarbB sodi 67.5 1.5E+02 0.0033 30.3 15.5 100 144-254 69-175 (354)
67 PRK12456 Na(+)-translocating N 65.9 1.2E+02 0.0026 28.6 14.4 78 229-306 42-123 (199)
68 PRK01061 Na(+)-translocating N 63.8 1.5E+02 0.0033 28.9 14.6 78 229-306 48-135 (244)
69 TIGR01940 nqrE NADH:ubiquinone 63.3 1.4E+02 0.003 28.3 14.3 79 229-307 40-126 (200)
70 PRK05274 2-keto-3-deoxyglucona 62.9 29 0.00062 35.2 7.7 48 137-187 201-248 (326)
71 TIGR00793 kdgT 2-keto-3-deoxyg 62.7 52 0.0011 33.1 9.2 55 118-175 181-235 (314)
72 PRK15086 ethanolamine utilizat 61.6 2E+02 0.0044 29.7 20.5 127 156-288 34-193 (372)
73 PF03812 KdgT: 2-keto-3-deoxyg 60.5 58 0.0012 32.9 9.1 127 118-253 181-310 (314)
74 PF05982 DUF897: Domain of unk 60.3 2E+02 0.0044 29.3 19.7 171 175-354 64-263 (327)
75 PRK03818 putative transporter; 58.9 68 0.0015 34.9 10.2 54 324-382 462-515 (552)
76 TIGR01625 YidE_YbjL_dupl AspT/ 57.3 59 0.0013 29.3 8.0 47 334-385 93-139 (154)
77 PRK05151 electron transport co 56.2 1.8E+02 0.0039 27.4 14.5 77 229-307 41-117 (193)
78 TIGR03802 Asp_Ala_antiprt aspa 55.8 1.9E+02 0.0041 31.6 13.0 62 139-205 62-124 (562)
79 PRK10669 putative cation:proto 54.5 3.1E+02 0.0067 29.6 15.6 102 140-251 281-386 (558)
80 PF03956 DUF340: Membrane prot 53.3 1.1E+02 0.0024 28.6 9.3 133 273-413 2-136 (191)
81 PLN03159 cation/H(+) antiporte 50.1 3.1E+02 0.0067 31.5 14.0 41 118-158 299-345 (832)
82 PF02508 Rnf-Nqr: Rnf-Nqr subu 49.5 2.2E+02 0.0049 26.5 13.5 73 229-305 41-113 (190)
83 COG1883 OadB Na+-transporting 48.3 2E+02 0.0044 29.0 10.5 98 145-253 91-189 (375)
84 PF03390 2HCT: 2-hydroxycarbox 48.0 98 0.0021 32.5 8.8 99 110-213 276-378 (414)
85 COG1346 LrgB Putative effector 47.7 2.7E+02 0.0058 26.9 14.5 97 311-414 77-174 (230)
86 PRK15060 L-dehydroascorbate tr 47.1 3.7E+02 0.008 28.4 17.6 53 111-167 222-274 (425)
87 COG4651 RosB Kef-type K+ trans 43.7 3.7E+02 0.0081 27.4 21.0 130 115-253 37-176 (408)
88 TIGR00783 ccs citrate carrier 41.6 1.6E+02 0.0034 30.3 8.9 61 140-203 242-303 (347)
89 PF04346 EutH: Ethanolamine ut 38.4 4.7E+02 0.01 27.0 17.6 129 156-289 33-193 (354)
90 PF11120 DUF2636: Protein of u 37.7 91 0.002 23.9 5.0 36 260-295 2-37 (62)
91 COG5505 Predicted integral mem 36.1 4.9E+02 0.011 26.6 12.4 107 138-251 63-171 (384)
92 TIGR00659 conserved hypothetic 34.3 4.3E+02 0.0094 25.5 12.1 92 312-412 75-169 (226)
93 PRK09796 PTS system cellobiose 32.6 6.3E+02 0.014 27.1 12.2 34 175-212 158-192 (472)
94 COG2431 Predicted membrane pro 32.5 5.2E+02 0.011 25.9 15.4 131 111-252 109-245 (297)
95 PF05982 DUF897: Domain of unk 32.2 5.6E+02 0.012 26.1 11.6 128 96-231 163-299 (327)
96 PF06826 Asp-Al_Ex: Predicted 31.5 4.1E+02 0.0088 24.3 14.4 83 114-204 29-120 (169)
97 KOG2722 Predicted membrane pro 31.5 1.3E+02 0.0028 31.3 6.4 148 101-250 239-401 (408)
98 COG0395 UgpE ABC-type sugar tr 30.5 5.4E+02 0.012 25.4 12.5 112 169-286 144-271 (281)
99 COG1970 MscL Large-conductance 29.7 1.9E+02 0.0042 25.4 6.3 67 117-187 21-92 (130)
100 PF05684 DUF819: Protein of un 29.4 6.5E+02 0.014 26.0 17.0 101 114-223 244-346 (378)
101 TIGR00832 acr3 arsenical-resis 28.2 5.1E+02 0.011 26.1 10.3 43 170-216 251-293 (328)
102 PRK03818 putative transporter; 27.4 8.3E+02 0.018 26.6 14.4 58 140-204 66-126 (552)
103 PF05684 DUF819: Protein of un 25.3 7.7E+02 0.017 25.5 30.5 107 138-251 58-167 (378)
104 PRK09824 PTS system beta-gluco 24.2 1E+03 0.022 26.5 12.3 33 175-211 154-187 (627)
105 TIGR00844 c_cpa1 na(+)/h(+) an 22.0 6.8E+02 0.015 28.8 10.5 80 140-223 300-382 (810)
106 KOG1307 K+-dependent Ca2+/Na+ 21.3 2.1E+02 0.0045 30.7 5.9 100 192-301 453-563 (588)
107 PRK04972 putative transporter; 21.3 1.1E+03 0.023 25.7 15.0 59 140-205 65-126 (558)
108 TIGR00841 bass bile acid trans 21.0 7.9E+02 0.017 24.0 13.2 62 191-254 89-154 (286)
109 COG3763 Uncharacterized protei 20.6 1.7E+02 0.0037 23.0 3.9 22 330-351 8-29 (71)
110 PF04284 DUF441: Protein of un 20.5 6.2E+02 0.013 22.6 9.4 94 106-205 11-113 (140)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=1.3e-52 Score=411.55 Aligned_cols=304 Identities=34% Similarity=0.553 Sum_probs=281.3
Q ss_pred HHHHHHh-hhHHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHH
Q 014893 101 VNILKQS-NSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 179 (416)
Q Consensus 101 ~~~l~~l-~~~l~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~P 179 (416)
.+.++.. .+.+++++++...++...|+.+.+++ .+++++++++||.||++++.+|+++..+|||.+++++.+||++||
T Consensus 4 ~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP 82 (319)
T COG0385 4 LRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLG-SAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP 82 (319)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHhccccchhhh-HHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 4444333 34488999999999999999999996 688899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 014893 180 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPV 259 (416)
Q Consensus 180 lla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~v 259 (416)
+++++++ ..+++|++++.|+++++|||||+.||+||+++|||+ ++|+++|.+||+++++++|+++.++.|+.+++
T Consensus 83 lla~~~~----~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~ 157 (319)
T COG0385 83 LLALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPV 157 (319)
T ss_pred HHHHHHH----HHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999 467799999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 014893 260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA 339 (416)
Q Consensus 260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~ 339 (416)
|.+++++++++.+++|+++|+.+|++.|++.++.+|.+++++..+++++++..++.+++.+.+ .+..+.+++++++.++
T Consensus 158 ~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~-~~~~v~~~v~~~n~lg 236 (319)
T COG0385 158 DVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIW-SGLLIFVAVILHNLLG 236 (319)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988877665 3456778889999999
Q ss_pred HHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014893 340 FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 415 (416)
Q Consensus 340 f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~q~i~~~~la~~w~~r~ 415 (416)
|..||+.+|+ ++.++ +|++|+++|+|+||.++|+++|..||++|.+++|.++|+++|++.+++++.+|+||.
T Consensus 237 ~~~gy~~ar~-~g~~~---a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~ 308 (319)
T COG0385 237 LLLGYFGARL-LGFDK---ADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI 308 (319)
T ss_pred HHHHHHHHHH-hCCCh---hheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999985 57775 899999999999999999999999776699999999999999999999999999873
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=1.9e-44 Score=360.87 Aligned_cols=280 Identities=15% Similarity=0.228 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhhh----hH---HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHH
Q 014893 111 LPHVVLGSTMLALVFPPSFTWFTAR----YY---APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGY 183 (416)
Q Consensus 111 l~l~v~~~~~~g~~~P~~~~~l~~~----~i---~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~ 183 (416)
+...++.+.++|+.+|..+.++... .. ...+++|||+||++++.+|+++.+||||.+..+++.||+++|+++|
T Consensus 12 ~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~ 91 (328)
T TIGR00832 12 IFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMF 91 (328)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 4444455779999999998887521 11 2356789999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhC--------C
Q 014893 184 IFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG--------K 255 (416)
Q Consensus 184 ~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g--------~ 255 (416)
+++++ ++++++++++|+++++||||+++||+||+++|||+ ++|+++|.++++++++++|.++.++.| +
T Consensus 92 ~l~~l---~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnv-alsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~ 167 (328)
T TIGR00832 92 LLAWL---FLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDP-EYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLT 167 (328)
T ss_pred HHHHH---HcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 99952 45899999999999999999999999999999999 899999999999999999999998876 3
Q ss_pred ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH-HHcccCChHHHHHHHHHHHHHHHhhhhhhhchhh--HH
Q 014893 256 RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR-----ICN-AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFG--LT 327 (416)
Q Consensus 256 ~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~-----~~~-~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~--~~ 327 (416)
.+++|+.+++++++.++++|+++|+.+|++.|+ +.+ +.++..+.++.+++.+++...++.|++.+.++.. ..
T Consensus 168 ~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~ 247 (328)
T TIGR00832 168 VITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIAL 247 (328)
T ss_pred eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 578999999999999999999999999999984 333 7777888888888888888888999887776422 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHH
Q 014893 328 ILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV 398 (416)
Q Consensus 328 i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v 398 (416)
+.+++++++.++|.+||+++|. ++.++ +|++|+++|+|+||.++|+++|..+|++++.+.++++|..
T Consensus 248 ~~~~v~l~~~~~~~lg~~~~r~-~~l~~---~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~ 314 (328)
T TIGR00832 248 IAIPLLIYFYIMFFLTFALAKK-LGLPY---SITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGP 314 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCcCh---hhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhh
Confidence 4456789999999999999984 57776 8999999999999999999999999987666666666654
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=3.5e-42 Score=338.68 Aligned_cols=272 Identities=30% Similarity=0.479 Sum_probs=247.5
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcC
Q 014893 130 TWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV 209 (416)
Q Consensus 130 ~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~ 209 (416)
+++. +++.+.++++||.+|++++.+|+++.++||+.+..+++.|++++|+++|+++ ..++++++++.|++++++|
T Consensus 4 ~~~~-~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~----~~~~l~~~~~~glvL~~~~ 78 (286)
T TIGR00841 4 TNLS-TILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGCC 78 (286)
T ss_pred hhHH-HHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHheeeC
Confidence 3443 5666779999999999999999999999999999999999999999999998 4678999999999999999
Q ss_pred CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014893 210 SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL----PVDVKGMVSSILQIVVVPIAAGLLLNRF 285 (416)
Q Consensus 210 Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v----~vd~~~i~~~Ll~~vllPl~lG~llr~~ 285 (416)
||+..+++||+++|||. +++..++.++|+++++++|+++.++.+... ++|+++++.+ +.++++|+++|+++|++
T Consensus 79 P~~~~s~v~t~~~~gn~-~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~ 156 (286)
T TIGR00841 79 PGGTASNVFTYLLKGDM-ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHK 156 (286)
T ss_pred CCchHHHHHHHHhCCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999 899999999999999999999999876544 4999999999 89999999999999999
Q ss_pred hHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhee
Q 014893 286 FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 365 (416)
Q Consensus 286 ~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~ 365 (416)
.|+..++.++ .+.++.+.+.+++...++.|.+.+.++ .+.++++++++++++|.+||+.+|. ++.++ +|++|++
T Consensus 157 ~p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~-~~l~~---~~~~t~~ 230 (286)
T TIGR00841 157 LPQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKL-AGLPW---ARCRTIS 230 (286)
T ss_pred hHHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH-hCCCH---hhheeee
Confidence 9999888888 899999888888887888888777664 4567788899999999999999974 56665 7999999
Q ss_pred eecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014893 366 YETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 415 (416)
Q Consensus 366 ~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~q~i~~~~la~~w~~r~ 415 (416)
+|+|+||.++|+++|.++|+ |+.++|+++|.++|++.+..++.+|+|+.
T Consensus 231 ~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~ 279 (286)
T TIGR00841 231 IEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH 279 (286)
T ss_pred eeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 89999999999999999999999998764
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=7.3e-39 Score=318.65 Aligned_cols=298 Identities=21% Similarity=0.333 Sum_probs=261.0
Q ss_pred hHHHHHHHHHHHHHhhcCcchhhhh----hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHH
Q 014893 109 SFLPHVVLGSTMLALVFPPSFTWFT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 184 (416)
Q Consensus 109 ~~l~l~v~~~~~~g~~~P~~~~~l~----~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~ 184 (416)
+|+++.+++++.+|+.+|+.+.... +....+.+++++|.+|++++.+|+++..+|||.++.++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999987432 234557899999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCCChHHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-CCccccChH
Q 014893 185 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVK 262 (416)
Q Consensus 185 l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~-g~~v~vd~~ 262 (416)
+.++. ...++++++.|+++++|+|++..|+ +||+.+|||. ++++.++.++|+++++++|+++.++. ++..++|+.
T Consensus 81 ~~~l~--~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~ 157 (313)
T PF13593_consen 81 LSRLF--PAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYA 157 (313)
T ss_pred HHHHh--hccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHH
Confidence 98531 1247899999999999999998887 5999999999 89999999999999999999999998 778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhh-hhhhchhh----HHHHHHHHHHHH
Q 014893 263 GMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFG----LTILLLIITFHL 337 (416)
Q Consensus 263 ~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~-~~i~~~~~----~~i~~~~i~~~l 337 (416)
+++.++...+++|+++|+++|++.+++.+|.++.++.++...++++++..++... +..+++.. ..+....+.++.
T Consensus 158 ~~~~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (313)
T PF13593_consen 158 SVLIKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL 237 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887652 22332221 234455777888
Q ss_pred HHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCC-C---cchhHHHHHHHHHHHHHHHHHHHHhh
Q 014893 338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD-P---LVSVPPAISTVIMSLMGFFLVMLWAK 413 (416)
Q Consensus 338 ~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~-p---~~alp~~iy~v~q~i~~~~la~~w~~ 413 (416)
..+.++++.+|. ++.++ +|++++.|++++||.++|++++...|++ | .+.+|.++||..|.++++.++.+|+|
T Consensus 238 ~~l~~~~~~~r~-~~~~~---~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 238 VVLVLGWLAARL-LGFSR---PDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred HHHHHHHHHHhh-cCCCh---hhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 889999999884 57776 8999999999999999999999999974 3 57999999999999999999999976
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=275.93 Aligned_cols=308 Identities=15% Similarity=0.214 Sum_probs=264.2
Q ss_pred hhchHHHHHHHhhhHHHHHHHH----HHHHHhhcCcchhhhh-------hhhHHHHHHHHHHHhcCCCCHHHHHHHhhch
Q 014893 96 QEFSLVNILKQSNSFLPHVVLG----STMLALVFPPSFTWFT-------ARYYAPALGFLMFAVGVNSSEKDFIEAFKRP 164 (416)
Q Consensus 96 ~~~~~~~~l~~l~~~l~l~v~~----~~~~g~~~P~~~~~l~-------~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p 164 (416)
+++..++.++.++|+++.|+.. |+.+|..+|+.+..+. +..+.+.+.+|||.+.+++|.++++++.|++
T Consensus 1 ~~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~ 80 (342)
T COG0798 1 MKMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP 80 (342)
T ss_pred CchhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence 3567788899999998877766 5566677788554432 2345568999999999999999999999999
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 014893 165 AAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 244 (416)
Q Consensus 165 ~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~ 244 (416)
|.+.+.++.|+++.|+++|+++++ +++..|++.+|+++++.+||..++.+|+++++||. .++++.++++.++++++
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~---fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~ 156 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWF---FLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVL 156 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHH
Confidence 999999999999999999999974 45778899999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHhhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHcccCChHHHHHHHHHHHHHHHhhh
Q 014893 245 TPLLSLLLIGKR-LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR------ICNAIRPFLPPLSVLVTACCVGAPLAINI 317 (416)
Q Consensus 245 ~Pl~l~ll~g~~-v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~------~~~~i~~~l~~ls~l~llliv~~~~~~n~ 317 (416)
.|.+..+++|.. +++|++++.+++++.+.+|+++|++.|++..| ..+++.|..++++..++++.++..++.+.
T Consensus 157 y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg 236 (342)
T COG0798 157 YAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQG 236 (342)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhH
Confidence 999999998764 88999999999999999999999999998643 24678888999999999999999999999
Q ss_pred hhhhchhh--HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCC-CCcchhHHH
Q 014893 318 ESVMSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPA 394 (416)
Q Consensus 318 ~~i~~~~~--~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~-~p~~alp~~ 394 (416)
+.+.+++. ..+++..++.....+.++|+++|. .+.+. +|+.+++++++.+|..+|+++|.+.|+ +...++.++
T Consensus 237 ~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~-lgl~y---~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~v 312 (342)
T COG0798 237 EQIVEQPLDILLIAIPLLIYFLLMFFISYFIAKA-LGLPY---EDAAALVFTGASNNFELAIAVAIALFGLTSGAALATV 312 (342)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCh---hhhhceeeeeccccHHHHHHHHHHhcCccccchhhhh
Confidence 99888754 345667888888999999999985 47776 899999999999999999999999998 566777778
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014893 395 ISTVIMSLMGFFLVMLW 411 (416)
Q Consensus 395 iy~v~q~i~~~~la~~w 411 (416)
+..+++..+=-.++..+
T Consensus 313 igpLvEVpvml~lV~v~ 329 (342)
T COG0798 313 VGPLVEVPVMLGLVKVA 329 (342)
T ss_pred ccchhhHHHHHHHHHHH
Confidence 88777765544444443
No 6
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.97 E-value=1.6e-30 Score=240.81 Aligned_cols=180 Identities=30% Similarity=0.554 Sum_probs=155.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHH
Q 014893 139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 218 (416)
Q Consensus 139 ~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~ 218 (416)
+.++++||.+|+++++||+++..||||.++.++++||+++|+++|++++ .+++++++++.|+++++||||++.+++|
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~---~~~~~~~~~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAW---LLLPLSPALALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTT--HHHHHHHHHHHHS-B-THHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCcHHHHHHH
Confidence 5789999999999999999999999999999999999999999999984 3678999999999999999999999999
Q ss_pred HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHH
Q 014893 219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--RICNAI 293 (416)
Q Consensus 219 T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd---~~~i~~~Ll~~vllPl~lG~llr~~~p--~~~~~i 293 (416)
|+++|||. ++++++|.++++++++++|+++.++.+...++| +++++.+++.++++|+++|+++|++.| +..+++
T Consensus 79 t~l~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~ 157 (187)
T PF01758_consen 79 TYLAGGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRL 157 (187)
T ss_dssp HHHTT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHH
T ss_pred HHHhCCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999999 899999999999999999999999988877777 999999999999999999999999999 888999
Q ss_pred cccCChHHHHHHHHHHHHHHHhhhhhhhc
Q 014893 294 RPFLPPLSVLVTACCVGAPLAINIESVMS 322 (416)
Q Consensus 294 ~~~l~~ls~l~llliv~~~~~~n~~~i~~ 322 (416)
++..+.++.+++++++...++.|.+.+.+
T Consensus 158 ~~~~~~~s~~~l~~~i~~~~~~~~~~i~~ 186 (187)
T PF01758_consen 158 KPFLKPLSFILLLLIIVLIFASNASVIAS 186 (187)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence 99999999999999988888888776543
No 7
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.7e-29 Score=250.73 Aligned_cols=279 Identities=43% Similarity=0.686 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHhhcC-cchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhh
Q 014893 110 FLPHVVLGSTMLALVFP-PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 188 (416)
Q Consensus 110 ~l~l~v~~~~~~g~~~P-~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l 188 (416)
.+++............| ..+.|+.....++.+.++|+++|++.|.+++++.+++|..+.+|++.||+++|+.+|.++
T Consensus 87 ~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~-- 164 (371)
T KOG2718|consen 87 ILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLS-- 164 (371)
T ss_pred chhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhh--
Confidence 35666777777777887 778888767778899999999999999999999999999999999999999999999998
Q ss_pred hhhccCCChHHHHHHHHHhcCCchhhHHHH-HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHH
Q 014893 189 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYA-TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSS 267 (416)
Q Consensus 189 ~~~~~~l~~~la~GliL~a~~Pg~~~s~v~-T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~ 267 (416)
..+.+|...++|++++.|+++++.+++. +...+||+ ++++.+|.++|+.+++++|++-.++.+..++.|...+..+
T Consensus 165 --~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v-~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s 241 (371)
T KOG2718|consen 165 --KVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDV-TLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIAS 241 (371)
T ss_pred --hHhhCCccccceeEEEEeccCCcchhhheeecCCcch-hhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhh
Confidence 4677888887788888888777777655 55559999 8999999999999999999999999888889999988889
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 268 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 347 (416)
Q Consensus 268 Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~ 347 (416)
.+.++.+|+.+|.++|+++|+..+.+++.++.+++....+.+......|.+.+.. +++.+......+++.+|..||+++
T Consensus 242 ~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~ 320 (371)
T KOG2718|consen 242 ILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLS 320 (371)
T ss_pred hhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888888888888876666 678899999999999999999996
Q ss_pred HHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHH
Q 014893 348 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV 398 (416)
Q Consensus 348 ~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v 398 (416)
+... .| +++++|+++|+|+||..++++++...++||.++.|++...+
T Consensus 321 ~~~~---~~-~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v 367 (371)
T KOG2718|consen 321 FSPL---DD-VATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSV 367 (371)
T ss_pred cccc---ch-hhhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhh
Confidence 4222 21 36999999999999999999999999999988887765543
No 8
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.13 E-value=6.7e-11 Score=109.80 Aligned_cols=192 Identities=14% Similarity=0.200 Sum_probs=150.6
Q ss_pred hHHHHHHHh-hhHHHHHHHHHHHHHhhcCcchhh---hhhhhH-H-HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHH
Q 014893 99 SLVNILKQS-NSFLPHVVLGSTMLALVFPPSFTW---FTARYY-A-PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYV 172 (416)
Q Consensus 99 ~~~~~l~~l-~~~l~l~v~~~~~~g~~~P~~~~~---l~~~~i-~-~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~ 172 (416)
=++|..++. ++|+...+.++...+-+-|..+.. ++++|. . +..+-+++..|++++.|++..+.+||+..+.+++
T Consensus 12 ~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI 91 (287)
T KOG4821|consen 12 WAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILI 91 (287)
T ss_pred HHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHH
Confidence 345566665 478888888888888888887643 333332 2 3677788999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 173 GQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (416)
Q Consensus 173 ~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v-~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l 251 (416)
....+.|-..|++..+. ..-+.+.++..|+.+.+|+|++.+|++ .|..+|||.+++.+....++.++++...|-....
T Consensus 92 ~~Ll~tPs~~~Lf~~~~-~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~ 170 (287)
T KOG4821|consen 92 LSLLITPSIVYLFCCAV-KAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQM 170 (287)
T ss_pred HHHHHhHHHHHHHHHHH-hCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999987431 223467789999999999999999997 8999999986666667778888888888888877
Q ss_pred hhCC------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014893 252 LIGK------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 291 (416)
Q Consensus 252 l~g~------------~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~ 291 (416)
++.. .+..-+.-++.+....+++|...|...+..+|+-+.
T Consensus 171 LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (287)
T KOG4821|consen 171 LLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTA 222 (287)
T ss_pred HHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCcee
Confidence 6521 122335566777777899999999999999887443
No 9
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=98.88 E-value=4.6e-08 Score=97.85 Aligned_cols=143 Identities=16% Similarity=0.182 Sum_probs=112.3
Q ss_pred HHHHHhhhH-HHHHHHHHH---HHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhH
Q 014893 102 NILKQSNSF-LPHVVLGST---MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177 (416)
Q Consensus 102 ~~l~~l~~~-l~l~v~~~~---~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi 177 (416)
+.++++-++ ..+..++|. ..|+-.|+......+........+.|+..|+.++.++.+ ++++......+.++++
T Consensus 174 ~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil 250 (321)
T TIGR00946 174 FVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLV 250 (321)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHH
Confidence 344444444 334444444 344555766554443444567889999999988877653 4567778888999999
Q ss_pred HHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 178 ~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
.|+++++++ ..++++++.....++++++|++..+.++++..|+|. .++...+.++|+++.+++|+++.++
T Consensus 251 ~P~i~~~~~----~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 251 QPAVMAGIS----KLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDV-ELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHH----HHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988 467889999999999999999999999999999999 8999999999999999999999864
No 10
>PRK09903 putative transporter YfdV; Provisional
Probab=98.73 E-value=2.4e-07 Score=92.57 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=107.7
Q ss_pred HHHHHhhhH-HHHHHHHHH---HHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhH
Q 014893 102 NILKQSNSF-LPHVVLGST---MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177 (416)
Q Consensus 102 ~~l~~l~~~-l~l~v~~~~---~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi 177 (416)
+.++++-++ ..+..++|. ..|+-.|+...+..+........+.|+..|..+...+++ .+ +....+.+.++++
T Consensus 165 ~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~ 240 (314)
T PRK09903 165 SALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLIL 240 (314)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHH
Confidence 445554444 233333443 344556776655443334457888999999988776542 22 3455677889999
Q ss_pred HHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 178 ~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
.|++++++. ...+++++...-.++++++|.+..+.+++...|+|. .++.....++|+++.+++|+++.++
T Consensus 241 ~P~i~~~~~----~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 241 MPLALLLVG----MACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYT-RTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHH----HHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 456888988889999999999999999999999999 8999999999999999999999875
No 11
>COG0679 Predicted permeases [General function prediction only]
Probab=98.56 E-value=2.1e-06 Score=85.83 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=113.7
Q ss_pred hHHHHHHHhhhHHH-HHHHHHH---HHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHH
Q 014893 99 SLVNILKQSNSFLP-HVVLGST---MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQ 174 (416)
Q Consensus 99 ~~~~~l~~l~~~l~-l~v~~~~---~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~ 174 (416)
+..+.++++.++.+ +..+++. ..|+-.|+......+........+.|+..|++++.+..+ ..+++........+
T Consensus 157 ~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~--~~~~~~~~~~~~~k 234 (311)
T COG0679 157 SLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLK--GSKPPIILIALSLK 234 (311)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhc--cccchhHHHHHHHH
Confidence 34556666666622 3333444 335667775554433334457889999999999994432 23355566667779
Q ss_pred HhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 175 FVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (416)
Q Consensus 175 fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~ 253 (416)
++++|+++++.+ ..++++++....+++.+++|++..+.+++...|+|. .++.....++|+++.+.+|.+...+.
T Consensus 235 ll~~Pl~~~~~~----~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~-~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 235 LLLAPLVALLVA----KLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDP-RLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHHHH----HHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999988 578899988888899999999999999999999999 89999999999999999999988764
No 12
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.49 E-value=8e-06 Score=81.04 Aligned_cols=276 Identities=18% Similarity=0.240 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHhhcCcchhhh--h----hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHH
Q 014893 112 PHVVLGSTMLALVFPPSFTWF--T----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185 (416)
Q Consensus 112 ~l~v~~~~~~g~~~P~~~~~l--~----~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l 185 (416)
..=++++.++.-++|+....- . +.-..+.+++.+|++|.+++.|+..+.+||---+ ++.++++-=++++.+
T Consensus 16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~g~~~ 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVIGLLV 92 (312)
T ss_pred HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHHHHHH
Confidence 333567778888999874321 1 1234578999999999999999999888885533 356777777778777
Q ss_pred HhhhhhccCCChHHHH-HHHHHhcCC---chhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccCh
Q 014893 186 GTISVSVFGLPTPIGA-GIMLVSCVS---GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDV 261 (416)
Q Consensus 186 ~~l~~~~~~l~~~la~-GliL~a~~P---g~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~ 261 (416)
++ +++.+.-..+ .+.+++++- |+.+...+....+-+ =.-.....+.--+|+++=+.+... .--++|+
T Consensus 93 ~~----~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~---d~gA~~~~sl~~GPf~tm~aLga~--gLA~ip~ 163 (312)
T PRK12460 93 GK----FFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDER---DVGAISILSLNDGPFFTMLALGAA--GLANIPI 163 (312)
T ss_pred HH----HcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHh---hhhHHhhhhhccCcHHHHHHHHHH--HHhcCCh
Confidence 74 4553332111 122233222 222333344443332 233333333334444443322211 1123554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 014893 262 KGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFV 341 (416)
Q Consensus 262 ~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~ 341 (416)
. .+. -.++|+++|++++...+++.+..++-.+. ...+.++..-...|-+.+.+ .++.-++..++...+.+.
T Consensus 164 ~----~lv-~lilpILiGmilGNld~~~~~~l~~Gi~f---~I~f~~f~LG~~lnl~~I~~-~G~~GIlL~v~vv~~t~~ 234 (312)
T PRK12460 164 M----ALV-AALLPLVLGMILGNLDPDMRKFLTKGGPL---LIPFFAFALGAGINLSMLLQ-AGLAGILLGVLVTIVTGF 234 (312)
T ss_pred H----HHH-HHHHHHHHHHHHhccchhhHHHHhccceE---eHHHHHHHhcCCeeHHHHHH-hChHHHHHHHHHHHHHHH
Confidence 3 233 38899999999999888777777776553 11111111112233334444 345445555666677888
Q ss_pred HHHHHHHHhhccccccchhhhheeeecccccHH-HHHHHHHH--hCCCCcchhH---HHHHHHHHHHHHHHHHHHHhhcc
Q 014893 342 AGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALALANR--FFQDPLVSVP---PAISTVIMSLMGFFLVMLWAKKS 415 (416)
Q Consensus 342 lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~-Lal~lA~~--~f~~p~~alp---~~iy~v~q~i~~~~la~~w~~r~ 415 (416)
.+|+++|.+ +.+ +..+...++..-|.. -+.+++.. .+. |.+... ++...++..+...++..||.||.
T Consensus 235 ~~~~i~rll-g~~-----~~~g~li~stAGnAIcgpAAVaAadP~~~-~~~~~Ataqvaa~vivTail~P~~t~~~~k~~ 307 (312)
T PRK12460 235 FNIFADRLV-GGT-----GIAGAAASSTAGNAVATPLAIAAADPSLA-PVAAAATAQVAASVIVTAILTPLLTSWVAKKE 307 (312)
T ss_pred HHHHHHHHh-CCC-----hhHHHHHHHHhhHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999754 543 233444443344432 22233322 221 211111 23345677778888888887664
No 13
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.35 E-value=9e-05 Score=73.42 Aligned_cols=285 Identities=18% Similarity=0.303 Sum_probs=153.5
Q ss_pred HHHHHhhhH----HHHHHHHHHHHHhhcCcchhhh---hh---hhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHH
Q 014893 102 NILKQSNSF----LPHVVLGSTMLALVFPPSFTWF---TA---RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGY 171 (416)
Q Consensus 102 ~~l~~l~~~----l~l~v~~~~~~g~~~P~~~~~l---~~---~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l 171 (416)
|..+.++|. +..=++++.++.-++|+.++.. .+ .-..+.+++.+|++|.++++|+..+.+||--.+ +
T Consensus 2 kI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l---l 78 (314)
T PF03812_consen 2 KIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL---L 78 (314)
T ss_pred ChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---H
Confidence 344455544 5555667888889999986522 11 123468899999999999999999999875544 4
Q ss_pred HHHHhHHHHHHHHHHhhhhhccCCCh---HHHHH---HHHHhcCCchh---hHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 014893 172 VGQFVVKPILGYIFGTISVSVFGLPT---PIGAG---IMLVSCVSGAQ---LSNYATFLTDPPLAPLSIVMTSLSTATAV 242 (416)
Q Consensus 172 ~~~fvi~Plla~~l~~l~~~~~~l~~---~la~G---liL~a~~Pg~~---~s~v~T~la~Gn~aaLsl~lt~istlla~ 242 (416)
+.++++-=++++++++ +++.+. ....| +.+++++.... +...+... ||. .=.-.... ++.
T Consensus 79 ~~K~~~~~~lgl~~~~----~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~y--Gd~-~D~gA~~i----~sl 147 (314)
T PF03812_consen 79 LVKFIIGALLGLLVGK----FFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQY--GDE-EDVGAFSI----LSL 147 (314)
T ss_pred HHHHHHHHHHHHHHHH----HcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHh--CCH-HHhHHHHH----HHh
Confidence 6677777777777774 454332 11122 22333332222 22233333 343 23333333 344
Q ss_pred HHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhh
Q 014893 243 FVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESV 320 (416)
Q Consensus 243 ~~~Pl~l~ll~g~--~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i 320 (416)
..-|+...+.+|. ..++|+.. +.-.++|+++|+.+-..-|++.+..++-.+.+- -.+.+.++. ..|-..+
T Consensus 148 ~~GPf~tMl~LG~sG~a~ip~~~-----lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lI-PF~~f~lGa--~inl~~i 219 (314)
T PF03812_consen 148 NDGPFFTMLALGASGLANIPWMS-----LVAALLPIIIGMILGNLDPDFRKFLAPGVPILI-PFFGFALGA--GINLSNI 219 (314)
T ss_pred hhhHHHHHHHHhhccccCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeee-ehhhhhhcC--CCCHHHH
Confidence 4455555555443 34677654 345789999999999999998887777554321 111111111 2233334
Q ss_pred hchhhH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---H
Q 014893 321 MSPFGL-TILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---P 393 (416)
Q Consensus 321 ~~~~~~-~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~--~f~~p~~alp---~ 393 (416)
++. +. .+++ .++..++.....|+.-|.+.+.+ .....+.++..-|. +.-.++|.. .|. |.+... .
T Consensus 220 ~~a-Gl~GIlL-gv~~~~vtg~~~~~~dr~i~~~~-----g~aG~A~sstAGnavatPaaiA~~dP~~~-~~~~~ATaQv 291 (314)
T PF03812_consen 220 IKA-GLSGILL-GVIVVVVTGIPLYLADRLILKGN-----GVAGAAISSTAGNAVATPAAIAAADPSFA-PYAASATAQV 291 (314)
T ss_pred HHh-CcchHHH-HHHHHHHHhHHHHHHHHHHcCCC-----CceeehHHhhhhhhhhhhHHHHHhChhhH-hhHHHHHHHH
Confidence 332 22 2322 23333334444566666443322 23334444444443 222333332 121 221111 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC
Q 014893 394 AISTVIMSLMGFFLVMLWAKKSE 416 (416)
Q Consensus 394 ~iy~v~q~i~~~~la~~w~~r~~ 416 (416)
+...++..+...+++.||.||-|
T Consensus 292 AaavIvTail~P~lt~~~~kr~k 314 (314)
T PF03812_consen 292 AAAVIVTAILTPILTSWWAKRFK 314 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456778888899999998854
No 14
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.35 E-value=1.1e-05 Score=82.24 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=102.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhcCcch----hhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhH
Q 014893 105 KQSNSFLPHVVLGSTMLALVFPPSF----TWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVV 177 (416)
Q Consensus 105 ~~l~~~l~l~v~~~~~~g~~~P~~~----~~l~---~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi 177 (416)
+.+.+-..+..++|+++++.-|..- .++. +......+.+.||.+|..+.....+.. .+.+......+..+++
T Consensus 240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~-~~~~~~~~~~~~rlii 318 (385)
T PF03547_consen 240 KLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSA-LGWKPSIIAVLVRLII 318 (385)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc-hhhHHHHHHHHHHHHH
Confidence 3333334555667777766643322 2222 122234678888888888776543322 2334445568899999
Q ss_pred HHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 014893 178 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS 249 (416)
Q Consensus 178 ~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l 249 (416)
+|++++++. ..++++++....+++.+++|++..+.+++...|.|. ..+.....++++++++++|+|+
T Consensus 319 ~P~i~~~~~----~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 319 LPLIGIGIV----FLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDE-EEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHH----HHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHC
Confidence 999999998 467788988888899999999999999999999998 7999999999999999999973
No 15
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.12 E-value=1.2e-06 Score=89.06 Aligned_cols=228 Identities=18% Similarity=0.218 Sum_probs=156.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHh-HHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHH
Q 014893 141 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT 219 (416)
Q Consensus 141 l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fv-i~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T 219 (416)
+...|+..|++++.+++.++.++++.+...+..++. ++|+..+... ..+..++..+...+...|+|++..+|.++
T Consensus 50 L~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~----v~~~~~~~~~~t~l~~~~~~~gl~~~~ls 125 (371)
T KOG2718|consen 50 LNFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLK----VLFLLDPLLAFTWLVTGCFPPGLLSNMLS 125 (371)
T ss_pred HhHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHH----HHhhcCCcccceEEEeCccccHHHHHHHH
Confidence 447899999999999999999998888888889999 9999999987 45666666777888899999999999999
Q ss_pred HhcCCCchhhHHHHHHHHHHHHHHHHH-HHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHc
Q 014893 220 FLTDPPLAPLSIVMTSLSTATAVFVTP-LLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIR 294 (416)
Q Consensus 220 ~la~Gn~aaLsl~lt~istlla~~~~P-l~l~ll~----g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~ 294 (416)
.-.++|. .+...++.-.+.+.+.++| ++++=+. +....+|...-..-++...+.|.-+|..++++.++-...+.
T Consensus 126 ~g~~~~~-~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~ls 204 (371)
T KOG2718|consen 126 FGIKLDM-DLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLS 204 (371)
T ss_pred HhcCccH-HHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhH
Confidence 9999999 8999999888888777777 2222111 22333443321222344677888888888888755444444
Q ss_pred ccCChHHHHHHHHHHHH-HHHhhhhhhhchhhHHHHHHHHHHHHHH--HHHHHHHHHHhhccccccchhhhheeeecccc
Q 014893 295 PFLPPLSVLVTACCVGA-PLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQ 371 (416)
Q Consensus 295 ~~l~~ls~l~llliv~~-~~~~n~~~i~~~~~~~i~~~~i~~~l~~--f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~r 371 (416)
..+..++.++.+++.-. ........+..+ . ..+....+.+++ +.+|+++.+. -.+++..+++++|
T Consensus 205 ilmT~~stv~avi~~pl~s~~l~~~l~~~d-~--~~v~~s~~~vv~~pl~lG~lL~~~---------~~k~t~~i~~~~~ 272 (371)
T KOG2718|consen 205 ILMTTISTVLAVILTPLLSILLGRALIPVD-A--LGVIASILQVVGLPLALGLLLNKW---------FPKRTVAIEPGLP 272 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhccc-c--hhhhhhhhHHhHHHHHHHHHhccc---------CccceeeeecCCC
Confidence 44444444433322111 111111112122 1 122224455566 8888877532 2468889999999
Q ss_pred cHHHHHHHHHHhCC
Q 014893 372 SSLLALALANRFFQ 385 (416)
Q Consensus 372 N~~Lal~lA~~~f~ 385 (416)
|.++...+-.-.|+
T Consensus 273 ~vsv~~t~l~~~~p 286 (371)
T KOG2718|consen 273 PVSVCLTILCLAFP 286 (371)
T ss_pred chHHHhhhhhhcCC
Confidence 99999988877776
No 16
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.88 E-value=0.00053 Score=67.76 Aligned_cols=274 Identities=15% Similarity=0.222 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhhcCcchhhhh---h---hhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHH
Q 014893 113 HVVLGSTMLALVFPPSFTWFT---A---RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG 186 (416)
Q Consensus 113 l~v~~~~~~g~~~P~~~~~l~---~---~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~ 186 (416)
+=++++.++.-++|+.+.... + .-..+.+++.+|++|.+++.|+-.+.+||---+ ++.++++-=++++.++
T Consensus 17 VPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g~~~~ 93 (314)
T TIGR00793 17 VPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVAAIAS 93 (314)
T ss_pred HHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHHHHHH
Confidence 335677788889999854421 1 123468999999999999999998888875533 3457777667777777
Q ss_pred hhhhhccCCCh---HHHHHH---HHHhcCC---chhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCc-
Q 014893 187 TISVSVFGLPT---PIGAGI---MLVSCVS---GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR- 256 (416)
Q Consensus 187 ~l~~~~~~l~~---~la~Gl---iL~a~~P---g~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~- 256 (416)
+ +++.+. .+..|+ .+++++- |+.+...+....+-+. .-.....+ .---|+...+.+|..
T Consensus 94 ~----~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D---~gA~~i~s----l~~GPf~TMi~LG~sG 162 (314)
T TIGR00793 94 R----IIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEE---AGAFVLMS----LESGPLMTMVILGTAG 162 (314)
T ss_pred H----HcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhh---hhhhhhhh----hccCcHHHHHHHhhcc
Confidence 4 444332 121122 2233222 2223333444433322 22222222 223355555555532
Q ss_pred -cccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhH-HHHHHHHH
Q 014893 257 -LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGL-TILLLIIT 334 (416)
Q Consensus 257 -v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~-~i~~~~i~ 334 (416)
-++|+.. ++-.++|+++|+.+...-|++.+.+.+-.+.+-- .+.+.++ ...|-+.+++. +. .+++ .++
T Consensus 163 lA~ip~~~-----lv~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIp-Ff~FaLG--aginl~~i~~a-Gl~GIlL-Gl~ 232 (314)
T TIGR00793 163 IASFEPHV-----FVGAVLPFLVGFALGNLDPELRDFFSKAVQTLIP-FFAFALG--NTIDLGVIIQT-GLLGILL-GVS 232 (314)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHhccCCCeeee-hhhhhhc--CCCCHHHHHHh-CcchHHH-HHH
Confidence 4577654 3457899999999999999888887776543211 1111111 12333344442 22 2222 223
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---HHHHHHHHHHHHHHHH
Q 014893 335 FHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---PAISTVIMSLMGFFLV 408 (416)
Q Consensus 335 ~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~--~f~~p~~alp---~~iy~v~q~i~~~~la 408 (416)
..++.....|+.-|.+.+.+ .....+.++..-|. +.-.++|.. .|. |.+... ++...++..+...++.
T Consensus 233 v~~vtG~~~~~~dr~~~g~~-----g~aG~A~sstAGnAvatPaavA~adPs~~-~~a~~ATaqvAaavivTaiL~Pilt 306 (314)
T TIGR00793 233 VIILTGIPLILADKFIGGGD-----GTAGIAASSSAGAAVATPVLIAEMVPAFK-PVAPAATALVATSVIVTSLLVPIAT 306 (314)
T ss_pred HHHHHhHHHHHHHHHhcCCC-----CchhhHHHHHHHHhhhhHHHHHHhChhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666442222 22234444444443 222333332 221 211111 2334567788889999
Q ss_pred HHHhhccC
Q 014893 409 MLWAKKSE 416 (416)
Q Consensus 409 ~~w~~r~~ 416 (416)
.||.||-|
T Consensus 307 a~~~kr~~ 314 (314)
T TIGR00793 307 VWWSKKVK 314 (314)
T ss_pred HHHHHhcC
Confidence 99998864
No 17
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.65 E-value=0.0032 Score=63.54 Aligned_cols=273 Identities=17% Similarity=0.268 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhhcCcchh--hhh----hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHH
Q 014893 112 PHVVLGSTMLALVFPPSFT--WFT----ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185 (416)
Q Consensus 112 ~l~v~~~~~~g~~~P~~~~--~l~----~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l 185 (416)
..-++++..+.-++|+... .+. +.-..+.+++-+|++|.++++|+....++|-..+ ++..+++-=++++..
T Consensus 18 ~vpl~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~~k~~~~~~~~~~~ 94 (326)
T PRK05274 18 LVPLLLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LLTKFAVAALVGVIA 94 (326)
T ss_pred eHHHHHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhH---HHHHHHHHHHHHHHh
Confidence 3445677788888998421 111 1234578999999999999999998888775543 234555555556666
Q ss_pred HhhhhhccCCCh---HHHHHHHHHhc------CCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC-
Q 014893 186 GTISVSVFGLPT---PIGAGIMLVSC------VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK- 255 (416)
Q Consensus 186 ~~l~~~~~~l~~---~la~GliL~a~------~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~- 255 (416)
++ +++.+. +...|+..... +=++.+...++...+... .-+...+.+ = .-|....++++.
T Consensus 95 ~~----~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d-~ga~i~lsl--~----~Gp~~tM~lL~aa 163 (326)
T PRK05274 95 GK----FIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKED-AGAFVLMSL--E----DGPFMTMLALGAA 163 (326)
T ss_pred hh----cchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCC-cchHHHHHH--h----hhHHHHHHHHHhh
Confidence 63 343211 22223222221 122333334555544322 122222222 2 224333333332
Q ss_pred -ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhh--hhhhchhhHHHHHHH
Q 014893 256 -RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI--ESVMSPFGLTILLLI 332 (416)
Q Consensus 256 -~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~--~~i~~~~~~~i~~~~ 332 (416)
.-.++..++... ++|+++|+.++.+.+++.+...+-.+.+--.. ....+.++ +.+.. .++.-.+..
T Consensus 164 gla~~p~~~li~a-----llplliG~~lgnl~~~l~~~~~~Gi~~lLp~~-----~~~lG~~l~lq~i~~-~G~~GilL~ 232 (326)
T PRK05274 164 GLASFPPPALVGA-----VLPLLVGFILGNLDPELRQFLGKAVPVLIPFF-----AFALGNGIDLGTIIT-AGLSGILLG 232 (326)
T ss_pred CcccCCCchhhHH-----HHHHHHHHHHHhHHHhhHHHhcCCcEEEHHHH-----HHHHhcceeHhHHHh-cCCcchhhh
Confidence 224555544222 29999999999988877777776654411111 11123222 23322 233223444
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHH-HHHHH--hCCC--CcchhHHHHHHHHHHHHHHHH
Q 014893 333 ITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLAL-ALANR--FFQD--PLVSVPPAISTVIMSLMGFFL 407 (416)
Q Consensus 333 i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal-~lA~~--~f~~--p~~alp~~iy~v~q~i~~~~l 407 (416)
+..++.....+|+..| +++.+ ++....+..++..|..-+- +++.. .+.. +.+.+-++.-.++..+...++
T Consensus 233 ~~~~~~t~~~~~~~~R-l~~~~----~g~~g~a~~ttaG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l 307 (326)
T PRK05274 233 VAVVAVTGIPLYLADR-LIGGG----NGVAGAAAGSTAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPIL 307 (326)
T ss_pred hhHhhccchhhHhHhh-eeecC----CCcchHHHHHHHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666777888886 44433 2334455555555653222 23221 2221 222333333345666777777
Q ss_pred HHHHhhc
Q 014893 408 VMLWAKK 414 (416)
Q Consensus 408 a~~w~~r 414 (416)
..||.||
T Consensus 308 ~~~~~k~ 314 (326)
T PRK05274 308 TAWWSKR 314 (326)
T ss_pred HHHHHHH
Confidence 7777665
No 18
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.54 E-value=0.12 Score=51.99 Aligned_cols=259 Identities=15% Similarity=0.166 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN- 216 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~- 216 (416)
.....++=..+|..++.+.+.+...++...+...+...+..-+.+|.+. +..+.|..- .+.++.||+.+.-
T Consensus 28 ~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----r~~~~d~~T----A~~~~~PGg~s~m~ 99 (318)
T PF05145_consen 28 NAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR----RISGLDRAT----AFFASMPGGLSEMV 99 (318)
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCChhH----HHHHcCCccHHHHH
Confidence 3445555566899999999998888888777777777777767777776 355665433 2478999998775
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC----ccccChH---HHHHHHHHHHHHHHHHHHHHHHH-hHH
Q 014893 217 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK----RLPVDVK---GMVSSILQIVVVPIAAGLLLNRF-FPR 288 (416)
Q Consensus 217 v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~----~v~vd~~---~i~~~Ll~~vllPl~lG~llr~~-~p~ 288 (416)
++++-.|+|. ..-.....+=.++-++++|+...++.+. ..+.+.. .-...+...+.+-...|.+.|+. +|.
T Consensus 100 ~la~~~gad~-~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~l~~~l~iPa 178 (318)
T PF05145_consen 100 ALAEEYGADT-RRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLWLALLALAALAGGLLARRLRIPA 178 (318)
T ss_pred HHHHHcCCCh-hhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5899999999 8988999999999999999999887653 1111100 11223444455555666666665 332
Q ss_pred --H---------HHHH---cccCChHHHHHHHHHHHHHHHhhh--hhhhc--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 289 --I---------CNAI---RPFLPPLSVLVTACCVGAPLAINI--ESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLA 350 (416)
Q Consensus 289 --~---------~~~i---~~~l~~ls~l~llliv~~~~~~n~--~~i~~--~~~~~i~~~~i~~~l~~f~lG~~l~~~l 350 (416)
+ .+.. +...|..-...--++++..++..- +.+.+ ..........+.+...++..++.+++ +
T Consensus 179 ~~llGpml~~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~-~ 257 (318)
T PF05145_consen 179 PWLLGPMLVSAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR-L 257 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 1 1111 222332222222233344444322 22111 11122334455566677888888887 4
Q ss_pred hccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHH----HHHHHHHHHHHHhhcc
Q 014893 351 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVI----MSLMGFFLVMLWAKKS 415 (416)
Q Consensus 351 ~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~----q~i~~~~la~~w~~r~ 415 (416)
.+.|. ...-++++=|--+.- ..+|...- .+..+ ++.+|++ -.+....++++|+||+
T Consensus 258 ~~~~~----~t~~La~aPGGl~eM--~l~A~~l~--~d~~~-V~~~q~~Rl~~v~~~~p~~~r~~~r~~ 317 (318)
T PF05145_consen 258 TGIDF----LTALLATAPGGLAEM--ALIALALG--ADVAF-VAAHQVVRLLFVLLLAPFIARWLRRRR 317 (318)
T ss_pred HCCCH----HHHHHHhCCccHHHH--HHHHHHcC--CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44432 333344444422221 22233322 22333 2345553 3455677778888876
No 19
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.27 E-value=0.23 Score=50.46 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=82.3
Q ss_pred HHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-HHHHhcCC
Q 014893 146 FAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDP 224 (416)
Q Consensus 146 f~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-v~T~la~G 224 (416)
..+|.+++.+++....++|...+..++....+.-+.+|.+.+ ..++|..-+ ..+++||+.+.- .+++-.|.
T Consensus 69 ~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gA 140 (352)
T COG3180 69 IMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPGNTA----FLGSSPGGASAMVSIAQDYGA 140 (352)
T ss_pred HHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCcchh----hHhcCCchHHHHHHHHHHhCC
Confidence 348999999999988888888888788788788788888875 334555433 378999999885 58999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 014893 225 PLAPLSIVMTSLSTATAVFVTPLLSLLLIG 254 (416)
Q Consensus 225 n~aaLsl~lt~istlla~~~~Pl~l~ll~g 254 (416)
|. .+...+..+=-+.-..+.|+....+.|
T Consensus 141 d~-~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 141 DL-RLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred Ch-hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99 899999999999999999999999885
No 20
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.19 E-value=0.32 Score=55.17 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHH-HHHHHhhhhhccCCCh-H----HHHHHHHHhcCCc
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL-GYIFGTISVSVFGLPT-P----IGAGIMLVSCVSG 211 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Pll-a~~l~~l~~~~~~l~~-~----la~GliL~a~~Pg 211 (416)
...+.++||..|+++|++.+++..|+ .+.+++. .+ +.|++ +++++..+ .....+. . +..|+.+... .-
T Consensus 109 ~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~~-ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~T-s~ 182 (832)
T PLN03159 109 NLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-GM-ALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVT-AF 182 (832)
T ss_pred HHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-HH-HHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHh-hH
Confidence 34678899999999999999855433 2322222 22 33443 44444321 1111111 1 2222222111 11
Q ss_pred hhhHHHHH--HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 212 AQLSNYAT--FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (416)
Q Consensus 212 ~~~s~v~T--~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l 251 (416)
...+.+++ ++.+-+...+++..++++-+++.+++-+...+
T Consensus 183 pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 183 PVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred HHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333 23455655677888888888888777665444
No 21
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.77 E-value=0.6 Score=45.42 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHH--HHHHHhhhhhccCCC--hHHHHHHHHHhcCCchh
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQ 213 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Pll--a~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~ 213 (416)
...+.+++|..|+++|.+++++..|+...+ ....+ +.|.+ ++..+ ..++.+ .....|..+...+|+..
T Consensus 48 ~igl~~llF~~Gl~~d~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~lg~~ls~Ts~~v~ 119 (273)
T TIGR00932 48 EFGVILLMFLIGLELDLERLWKLRKAAFGV---GVLQV-LVPGVLLGLLLG----HLLGLALGAAVVIGIILALSSTAVV 119 (273)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHhHHHHH
Confidence 456889999999999999998765543322 22222 23422 23233 233433 33444444443333222
Q ss_pred hHHHHHH--hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014893 214 LSNYATF--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 291 (416)
Q Consensus 214 ~s~v~T~--la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~ 291 (416)
. .++.. +.+.+...+.+....++-+++.+..-+......+.. .+.......+...+..-+..+.+.++..+...+
T Consensus 120 ~-~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (273)
T TIGR00932 120 V-QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRPVLR 196 (273)
T ss_pred H-HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 23332 235555456677777888888888777665543322 222223333333344444556666665555444
Q ss_pred HH
Q 014893 292 AI 293 (416)
Q Consensus 292 ~i 293 (416)
+.
T Consensus 197 ~~ 198 (273)
T TIGR00932 197 LT 198 (273)
T ss_pred HH
Confidence 44
No 22
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.98 Score=46.90 Aligned_cols=150 Identities=16% Similarity=0.198 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHH-HHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN 216 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~P-lla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~ 216 (416)
...+.++||..|++.|.+++++..|+. ..+...--+..| .++...... +..++.++.+..|..+. ....+..+.
T Consensus 63 elGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~-~sS~~i~~~ 137 (397)
T COG0475 63 ELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALA-LSSTAIVLK 137 (397)
T ss_pred HHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHH-HHHHHHHHH
Confidence 346889999999999999998776654 122222223444 333222210 01234444555555533 333444555
Q ss_pred HHHH--hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014893 217 YATF--LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI 293 (416)
Q Consensus 217 v~T~--la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd-~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i 293 (416)
++.+ ..+.+.....+....+.-+.+..+..+...+..+...+.+ ...+...+.....+=+.+| |++.|+..++.
T Consensus 138 iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g---~~l~~~~~r~~ 214 (397)
T COG0475 138 ILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG---RYLLPPLFRRV 214 (397)
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5555 3344433466666777777777777776665544344433 2344444443444333344 44444444444
Q ss_pred cc
Q 014893 294 RP 295 (416)
Q Consensus 294 ~~ 295 (416)
++
T Consensus 215 ~~ 216 (397)
T COG0475 215 AK 216 (397)
T ss_pred Hh
Confidence 43
No 23
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.03 E-value=0.6 Score=50.52 Aligned_cols=173 Identities=18% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhcCcc--hh--hhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHH-HHHHHHHHhHHHHHHHHH
Q 014893 111 LPHVVLGSTMLALVFPPS--FT--WFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI-FAGYVGQFVVKPILGYIF 185 (416)
Q Consensus 111 l~l~v~~~~~~g~~~P~~--~~--~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~l-l~~l~~~fvi~Plla~~l 185 (416)
+...+++|+++|-..+.. +. ...+......+.+++|..|++++.+++++..+..-.+ ..+.+..+++. ++..
T Consensus 33 ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~~~---g~~~ 109 (562)
T PRK05326 33 LLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAGLT---GLFA 109 (562)
T ss_pred HHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 344555666666433221 11 1112334467899999999999999998665443222 22222222221 2222
Q ss_pred HhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCC------chhhHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 014893 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPP------LAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPV 259 (416)
Q Consensus 186 ~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn------~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~v 259 (416)
. ..++.+. ..++++-++...+..+.++.-+-+.+ ...+......++-.++++++=+.+.+..+...+.
T Consensus 110 ~----~l~g~~~--~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~ 183 (562)
T PRK05326 110 H----WLLGLDW--LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIELITGGETGL 183 (562)
T ss_pred H----HHhcCCH--HHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcc
Confidence 2 2344433 33444444433333333333333322 2112222233444556555444444443333222
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014893 260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI 293 (416)
Q Consensus 260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i 293 (416)
+. ..+..++..+.+-+++|....+......++.
T Consensus 184 ~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~ 216 (562)
T PRK05326 184 SW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRI 216 (562)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 2233344455556666666665555544444
No 24
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=95.82 E-value=0.64 Score=41.87 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN- 216 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~- 216 (416)
.....++-...|++++.+++++..+.+...+...+...++.=..++.+. +..+.|..-+ +.+++|||...-
T Consensus 50 ~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~----~~~~~~~~ta----~La~~PGGl~~m~ 121 (156)
T TIGR03082 50 ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLA----RLTGVDPLTA----FLATSPGGASEMA 121 (156)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHH----HHHhCCchHHHHH
Confidence 3455666677999999999998888777665555555555445555555 4556655332 478999998775
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 217 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (416)
Q Consensus 217 v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l 251 (416)
..+.-.|.|. +.-.....+=.++-.+..|+...+
T Consensus 122 ~~A~~~gad~-~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 122 ALAAELGADV-AFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778889998 788888888777777888887653
No 25
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.89 E-value=6 Score=43.55 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCC--hHHHHHHHHHhcCCchhhHH
Q 014893 139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLSN 216 (416)
Q Consensus 139 ~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~~s~ 216 (416)
..+.++||..|+++|++++++..|+ ++..-..|.++.-+++++++ ..++.+ ..+.+|..+...++ +....
T Consensus 62 lGvv~LlF~iGLEl~~~~l~~~~~~---~~~~g~~qv~~~~~~~~~~~----~~~g~~~~~al~ig~~la~SSt-aiv~~ 133 (621)
T PRK03562 62 FGVVLMLFVIGLELDPQRLWKLRRS---IFGGGALQMVACGGLLGLFC----MLLGLRWQVALLIGLGLALSST-AIAMQ 133 (621)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHH-HHHHH
Confidence 4688899999999999999865333 22223345444434444444 234443 34445555443332 33344
Q ss_pred HHHHhc--CCCchhhHHHHHHHHHHHHHH
Q 014893 217 YATFLT--DPPLAPLSIVMTSLSTATAVF 243 (416)
Q Consensus 217 v~T~la--~Gn~aaLsl~lt~istlla~~ 243 (416)
++..+- +......++....+.-++++.
T Consensus 134 ~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ 162 (621)
T PRK03562 134 AMNERNLMVTQMGRSAFAILLFQDIAAIP 162 (621)
T ss_pred HHHHhccccCchHHHHHHHHHHHHHHHHH
Confidence 454432 333223445555555554443
No 26
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.88 E-value=6.5 Score=42.50 Aligned_cols=102 Identities=25% Similarity=0.294 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCC--hHHHHHHHHHhcCCchhhH
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLS 215 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~~s 215 (416)
...+.++||..|+++|.+++++.. +....+...++++.-++++++++ .++.+ ..+..|..+.. ++.+...
T Consensus 62 ~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~al~lg~~ls~-tS~~vv~ 133 (558)
T PRK10669 62 ELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALSA----VLGWSLMTGIVFGLCLST-ASTVVLL 133 (558)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH----HhCCCHHHHHHHHHHHHH-HHHHHHH
Confidence 347889999999999999997542 33333445565555455555552 34433 33333433222 1112222
Q ss_pred HHHHHhc--CCCchhhHHHHHHHHHHHHHHHHHH
Q 014893 216 NYATFLT--DPPLAPLSIVMTSLSTATAVFVTPL 247 (416)
Q Consensus 216 ~v~T~la--~Gn~aaLsl~lt~istlla~~~~Pl 247 (416)
..+..+- +-+...+++....+.-+++++++-+
T Consensus 134 ~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~ 167 (558)
T PRK10669 134 RALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVL 167 (558)
T ss_pred HHHHhcCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 1122235566666666666554443
No 27
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.73 E-value=5.4 Score=45.04 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhcCcchhhhh----h----hhHHHHHHHHHHHhcCCCCHHHHHHHhhchh
Q 014893 111 LPHVVLGSTMLALVFPPSFTWFT----A----RYYAPALGFLMFAVGVNSSEKDFIEAFKRPA 165 (416)
Q Consensus 111 l~l~v~~~~~~g~~~P~~~~~l~----~----~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~ 165 (416)
..+.+++|+++|-..-..+.... + ...-..+.+.+|..|++++.+.+++.++.+.
T Consensus 41 ~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~ 103 (810)
T TIGR00844 41 SMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVT 103 (810)
T ss_pred HHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH
Confidence 34566667766654322222110 0 1122578999999999999999986655544
No 28
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=94.66 E-value=0.42 Score=47.78 Aligned_cols=119 Identities=11% Similarity=0.228 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHH--hH-HHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHH
Q 014893 262 KGMVSSILQIVVVPIAAGLLL-NRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL 337 (416)
Q Consensus 262 ~~i~~~Ll~~vllPl~lG~ll-r~~--~p-~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l 337 (416)
+.++.++ .-+++-+.+|.++ ||. ++ +..+.+.+. +-.+.+=+.++..+........+...+...........
T Consensus 4 ~~~~~~i-lpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~---v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 4 YVILETV-LPILVVILLGYILGKRFGILDEEHASGINRF---VINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3567778899999 665 22 223333332 22233333333334432111001011222233334455
Q ss_pred HHHHHHHHHHHHhhccccccchhhhheeeecccccH-HHHHHHHHHhCCCC
Q 014893 338 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQDP 387 (416)
Q Consensus 338 ~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~~f~~p 387 (416)
..+.++|.++|++++.++ +++.+..+.++.-|. -+|++++...|++.
T Consensus 80 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~N~~~~GlPl~~~~~G~~ 127 (321)
T TIGR00946 80 GSYALIWLITKPLFKADY---GKLSGFLLVSALPNTAFIGYPLLLSLFGEE 127 (321)
T ss_pred HHHHHHHHHHHHHHhccc---chhhHHHHHhhhccceeehHHHHHHHhccc
Confidence 667888888875555554 677888888898896 56899999989743
No 29
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.42 E-value=6.2 Score=39.63 Aligned_cols=134 Identities=16% Similarity=0.190 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHh-hc--CcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHh
Q 014893 111 LPHVVLGSTMLAL-VF--PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (416)
Q Consensus 111 l~l~v~~~~~~g~-~~--P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~ 187 (416)
+.+.+++|++++- .+ |+..+.-.+......+-.-.-.+|.++++.|+.+.-.+ .++.... .....=++++.++.
T Consensus 29 ~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~--~~~~~~~-~v~~~~~~~~~lg~ 105 (305)
T PF03601_consen 29 LLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWK--GLLIIII-VVILTFLLTYWLGR 105 (305)
T ss_pred HHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCcc--HHHHHHH-HHHHHHHHHHHHHH
Confidence 4677777888774 22 22222211111124555555568999999999865333 2332222 22223344555652
Q ss_pred hhhhccCCChHHHHHHHHHhcCCchhhHHH----HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 188 l~~~~~~l~~~la~GliL~a~~Pg~~~s~v----~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
..+++|++.+ -++-++.+=||.++.. ..+--+-|. ++++..+.+-..++++..|.+-..+
T Consensus 106 ---r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~-a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 106 ---RLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDV-AYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred ---HHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCce-eeeehHHHHHHHHHHHHHHHHHHHh
Confidence 4678888754 4444666666665543 223345566 7999999999999999999998865
No 30
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.54 E-value=13 Score=40.14 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCcchhhhhh-hhHHHHHHHHHHHhcCCCCHHHHHHHhhc
Q 014893 112 PHVVLGSTMLALVFPPSFTWFTA-RYYAPALGFLMFAVGVNSSEKDFIEAFKR 163 (416)
Q Consensus 112 ~l~v~~~~~~g~~~P~~~~~l~~-~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~ 163 (416)
...+++|+++|...-.......+ ......+..++|..|++++.+++++..+.
T Consensus 26 v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~ 78 (525)
T TIGR00831 26 IALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRP 78 (525)
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34455677777431110001111 12235788999999999999999865443
No 31
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.46 E-value=1.2 Score=45.37 Aligned_cols=107 Identities=14% Similarity=0.302 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHH--hH-HHHHHHcccCChHHHHHHHHHHHHHHHhhh--hhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 014893 271 IVVVPIAAGLLLNRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINI--ESVMSPFGLTILLLIITFHLSAFVAGYV 345 (416)
Q Consensus 271 ~vllPl~lG~llr~~--~p-~~~~~i~~~l~~ls~l~llliv~~~~~~n~--~~i~~~~~~~i~~~~i~~~l~~f~lG~~ 345 (416)
-+++-+++|.+.+++ ++ +..+.+.+. .-.+++=+.++..++.+. +.+.+ + +.+.+...+..++++.+++.
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~l---v~~~~lP~liF~~i~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 82 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKL---VFNVFLPALIFSSIANTDTLEDLLS-L-WFIPVFAFIIFILGLLLGFL 82 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHhccchhhhhh-h-HHHHHHHHHHHHHHHHHHHH
Confidence 456667788888876 22 222223322 223333334444444321 11211 1 23344455667777888888
Q ss_pred HHHHhhccccccchhhhheeeecccccH-HHHHHHHHHhCCC
Q 014893 346 VTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQD 386 (416)
Q Consensus 346 l~~~l~~~~~~~~~~~~tl~~~tg~rN~-~Lal~lA~~~f~~ 386 (416)
+.| +++.++ +++.....+++..|. .+++++....+++
T Consensus 83 ~~~-~~~~~~---~~~~~~~~~~~~~N~~~lglpi~~~l~g~ 120 (385)
T PF03547_consen 83 LSR-LFRLPK---EWRGVFVLAASFGNTGFLGLPILQALFGE 120 (385)
T ss_pred HHH-hcCCCc---ccceEEEecccCCcchhhHHHHHHHHhcc
Confidence 876 455554 677778888888997 7789999998974
No 32
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=93.28 E-value=0.81 Score=43.63 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=72.3
Q ss_pred HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 014893 154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 233 (416)
Q Consensus 154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~l 233 (416)
.|+.....||++.++.++...-++--+..+.++ ..+++++++..++.-=+ =+++.+.-.++..|||. +++.+.
T Consensus 67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~----~~lgl~~~~~~Sl~pkS--VTtpiAi~is~~iGG~~-sLta~~ 139 (215)
T PF04172_consen 67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLA----RLLGLSPEIILSLAPKS--VTTPIAIEISEQIGGIP-SLTAVF 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHHHHH--hhHHHHHHHHHHhCChH-HHHHHH
Confidence 456666678888898888887777777777777 57899999886664211 13334445899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014893 234 TSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 234 t~istlla~~~~Pl~l~ll 252 (416)
+.++-+++..+-|.++.++
T Consensus 140 VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 140 VVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhhHHHHhHHHHHhHc
Confidence 9999999999999999986
No 33
>PRK10711 hypothetical protein; Provisional
Probab=92.93 E-value=1.1 Score=43.08 Aligned_cols=92 Identities=14% Similarity=-0.006 Sum_probs=72.3
Q ss_pred HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 014893 154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 233 (416)
Q Consensus 154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~l 233 (416)
.++.+...||++.++.++..--++--+.++.++ ..+++++++..++.==+ =+++.+--.++..||+. +++.+.
T Consensus 78 Y~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~----~~lg~~~~~~~Sl~pkS--VTtPIAm~is~~iGG~~-sLta~~ 150 (231)
T PRK10711 78 YEQLHQIRARWKSIISICFIGSVVAMVTGTAVA----LWMGATPEIAASILPKS--VTTPIAMAVGGSIGGIP-AISAVC 150 (231)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHhhhh--hhHHHHHHHHHHhCCcH-HHHHHH
Confidence 355666667888899988888777778888888 57899999886654111 13333344799999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014893 234 TSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 234 t~istlla~~~~Pl~l~ll 252 (416)
+.++-+++.++-|.++.++
T Consensus 151 ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 151 VIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999987
No 34
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=92.84 E-value=5.4 Score=40.21 Aligned_cols=105 Identities=8% Similarity=0.125 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH-HH
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YA 218 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~-v~ 218 (416)
+-.++=...|++.+.+++++..|.....+...+....+.=++++.+. .+.++|. .-.+++++|||...- ..
T Consensus 209 aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~----~~~~~~~----~t~~La~aPGGl~eM~l~ 280 (318)
T PF05145_consen 209 AQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLS----RLTGIDF----LTALLATAPGGLAEMALI 280 (318)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCH----HHHHHHhCCccHHHHHHH
Confidence 44455557899999999988766655554444444455545566665 3555544 344689999999775 57
Q ss_pred HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (416)
Q Consensus 219 T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~ 253 (416)
+.-.|.|. +.-.....+=.+.-.+..|.+..++.
T Consensus 281 A~~l~~d~-~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 281 ALALGADV-AFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999 88888888888888888888887764
No 35
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=92.72 E-value=1.2 Score=42.89 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=71.0
Q ss_pred HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 014893 154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM 233 (416)
Q Consensus 154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~l 233 (416)
.++.+...||++.++.++..--++--..++.++ ..+++++++..++.-=+ =+++.+--.++..|||. +++.+.
T Consensus 77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la----~~lg~~~~i~~Sl~pkS--vTtpiAm~vs~~iGG~~-sLta~~ 149 (226)
T TIGR00659 77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLA----LLLGLGPEIIASLLPKS--VTTPIAMHVSEMIGGIP-AVTAVF 149 (226)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHhhhHH--hhHHHHHHHHHHhCChH-HHHHHH
Confidence 566666677888888888877666667777887 57899998876553111 13334445899999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 014893 234 TSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 234 t~istlla~~~~Pl~l~ll 252 (416)
+.++-+++..+-|.++.++
T Consensus 150 vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 150 VILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999987
No 36
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=92.54 E-value=1.3 Score=42.64 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=71.8
Q ss_pred HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCch---hhHHHHHHhcCCCchhhH
Q 014893 154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA---QLSNYATFLTDPPLAPLS 230 (416)
Q Consensus 154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~---~~s~v~T~la~Gn~aaLs 230 (416)
.++.+...|+++.++.++++--++--+.++.++ ..+++++++..+++ |=. +.+--.++..||+. +++
T Consensus 83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la----~~lgl~~~~~~Sl~-----pKSVTtPIAm~is~~iGG~p-sLt 152 (232)
T PRK04288 83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVA----KLIQLDNAVMASML-----PQAATTAIALPVSAGIGGIK-EIT 152 (232)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHh-----hHhhhHHHHHHHHHHhCCcH-HHH
Confidence 355555667888899888887777777788888 57899998876553 533 34445899999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014893 231 IVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 231 l~lt~istlla~~~~Pl~l~ll 252 (416)
.+.+.++-+++.++-|.++.++
T Consensus 153 A~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 153 SFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999987
No 37
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=92.00 E-value=2.1 Score=43.05 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhcc
Q 014893 114 VVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF 193 (416)
Q Consensus 114 ~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~ 193 (416)
.+++++++|-+.+..-+.++ +-+...+.+..|.+|.+++++|+.+. -+..++.+++.-.+ .=++.+.+.+ .+
T Consensus 172 pILiGmilGNld~~~~~~l~-~Gi~f~I~f~~f~LG~~lnl~~I~~~--G~~GIlL~v~vv~~-t~~~~~~i~r----ll 243 (312)
T PRK12460 172 PLVLGMILGNLDPDMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQA--GLAGILLGVLVTIV-TGFFNIFADR----LV 243 (312)
T ss_pred HHHHHHHHhccchhhHHHHh-ccceEeHHHHHHHhcCCeeHHHHHHh--ChHHHHHHHHHHHH-HHHHHHHHHH----Hh
Confidence 33344444444433222332 34455788888999999999999754 24445555544333 2355666665 44
Q ss_pred CCChHHHHHHHH-HhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 194 GLPTPIGAGIML-VSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (416)
Q Consensus 194 ~l~~~la~GliL-~a~~Pg~~~s~v-~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~ 253 (416)
+.+......+-- .+.+=|+.++.. ..-..+.-. +.+.+....+.++..++.|++..++.
T Consensus 244 g~~~~~g~li~stAGnAIcgpAAVaAadP~~~~~~-~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 244 GGTGIAGAAASSTAGNAVATPLAIAAADPSLAPVA-AAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred CCChhHHHHHHHHhhHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766655322210 111112222211 111112222 56666666677777777777776653
No 38
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=91.86 E-value=1.5 Score=44.02 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHcccCChH----HHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 014893 271 IVVVPIAAGLLLNRFFPRICNAIRPFLPPL----SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV 346 (416)
Q Consensus 271 ~vllPl~lG~llr~~~p~~~~~i~~~l~~l----s~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l 346 (416)
..++.+++|++++.+..+..++.++-.+.. -.+++++. -+..+-+.+.+ .++...+..++.....+.+++++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~l 103 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWL 103 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHH
Confidence 456778899999973322223333333222 22333322 12222233433 45544555666777788999999
Q ss_pred HHHhhccccccchhhhheeeecccccHHHHHHHHHH
Q 014893 347 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANR 382 (416)
Q Consensus 347 ~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~ 382 (416)
++++++.++ +...-++-.++.-=.+-.++++-.
T Consensus 104 g~r~~~l~~---~~~~Lia~GtsICG~SAi~A~a~~ 136 (305)
T PF03601_consen 104 GRRLFGLDR---KLAILIAAGTSICGASAIAATAPV 136 (305)
T ss_pred HHHHhCCCH---HHHHHHHhhcccchHHHHHHHccc
Confidence 955778864 455555555555555544455443
No 39
>COG2855 Predicted membrane protein [Function unknown]
Probab=91.56 E-value=17 Score=36.89 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhcCcchhhhh---hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHh
Q 014893 111 LPHVVLGSTMLALVFPPSFTWFT---ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (416)
Q Consensus 111 l~l~v~~~~~~g~~~P~~~~~l~---~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~ 187 (416)
+.+.+++|+++|. +++..+... +-.-...+-+-.-..|.++++.|+.+.=.+--.+. .......=++++.++
T Consensus 40 l~lAIllGi~l~~-l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~---~~~l~~t~~~~~~lg- 114 (334)
T COG2855 40 LTLAILLGILLGI-LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLII---AITLSSTFLFAYFLG- 114 (334)
T ss_pred HHHHHHHHHHHhc-cccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHH---HHHHHHHHHHHHHHH-
Confidence 5677888888883 333332221 11122355444455789999999986644332222 222233335577777
Q ss_pred hhhhccCCChHHHHHHHHHhcCCchhhHHH----HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 188 l~~~~~~l~~~la~GliL~a~~Pg~~~s~v----~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
..+++|...+ -++=++++=||.++.. .+.--+-|+ +.++..+.+-..++.+..|.+-.++
T Consensus 115 ---~~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~ev-a~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 115 ---KLLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEV-AVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred ---HHhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCcccc-ceehhhHHHHHHHHHHHHHHHHHHh
Confidence 4678888765 4445666667776654 233344566 7889999999999999999988865
No 40
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.35 E-value=26 Score=38.46 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCCh--HHHHHHHHHhcCCchhhHH
Q 014893 139 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT--PIGAGIMLVSCVSGAQLSN 216 (416)
Q Consensus 139 ~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~--~la~GliL~a~~Pg~~~s~ 216 (416)
..+.++||..|+++|++++++..|+ .+..-..|.++.-++++++. ..++.+. .+.+|+.+ +.++++....
T Consensus 62 lGvv~LLF~iGLel~~~~l~~~~~~---~~~~g~~~v~~t~~~~~~~~----~~~g~~~~~a~~~g~~l-a~SSTaiv~~ 133 (601)
T PRK03659 62 LGVVFLMFIIGLELNPSKLWQLRRS---IFGVGAAQVLLSAAVLAGLL----MLTDFSWQAAVVGGIGL-AMSSTAMALQ 133 (601)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHccCHHHHHHHHHHH-HHHHHHHHHH
Confidence 4788999999999999999765332 22222334444333333333 2334443 34445433 2233333344
Q ss_pred HHHHhcCCCc--hhhHHHHHHHHHHHHH
Q 014893 217 YATFLTDPPL--APLSIVMTSLSTATAV 242 (416)
Q Consensus 217 v~T~la~Gn~--aaLsl~lt~istlla~ 242 (416)
++...-.-+. ..+++....+.-+.++
T Consensus 134 iL~e~~~~~t~~G~~~l~vll~~Di~~i 161 (601)
T PRK03659 134 LMREKGMNRSESGQLGFSVLLFQDLAVI 161 (601)
T ss_pred HHHHcccccCchHHHHHHHHHHHHHHHH
Confidence 5554432222 1234444444544433
No 41
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=90.85 E-value=13 Score=34.70 Aligned_cols=123 Identities=23% Similarity=0.341 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHH--HHHHHh-hchhHHHHHHHHHHhHHHHH-HHHHHhhh
Q 014893 114 VVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEK--DFIEAF-KRPAAIFAGYVGQFVVKPIL-GYIFGTIS 189 (416)
Q Consensus 114 ~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~--~l~~~~-~~p~~ll~~l~~~fvi~Pll-a~~l~~l~ 189 (416)
.+++|.++|+......... +....+.+.+++|.+|+++.-+ .+++.. -+++.+++.+.. ++-.++ ++..+
T Consensus 4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t--IlGSllgg~l~~--- 77 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT--ILGSLLGGLLAS--- 77 (191)
T ss_pred eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHH---
Confidence 4678889999887664333 3567789999999999988665 333333 234444433332 222233 33333
Q ss_pred hhccCCChHHHHHHHHHhcCCchh---hHH-HHHHhcCCCchhhHHHHHHHHH----HHHHHHHHHHHHHh
Q 014893 190 VSVFGLPTPIGAGIMLVSCVSGAQ---LSN-YATFLTDPPLAPLSIVMTSLST----ATAVFVTPLLSLLL 252 (416)
Q Consensus 190 ~~~~~l~~~la~GliL~a~~Pg~~---~s~-v~T~la~Gn~aaLsl~lt~ist----lla~~~~Pl~l~ll 252 (416)
.+++.+.... +. .+.|-. .|. ..|.+.+-.. -++..++| +++.+.+|++...+
T Consensus 78 -~ll~~~~~~~--la---v~sG~GwYSlsg~~i~~~~~~~~----G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 78 -LLLGLSLKES--LA---VASGFGWYSLSGVLITQLYGPEL----GTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred -HHhcCCHHHH--HH---HHccCcHHHhHHHHHHhhhCHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445554332 22 122333 222 3555544322 23333343 57999999999843
No 42
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=88.61 E-value=4.9 Score=38.59 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=71.2
Q ss_pred HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH---HHHHhcCCCchhhH
Q 014893 154 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLS 230 (416)
Q Consensus 154 ~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~---v~T~la~Gn~aaLs 230 (416)
.|+.....|||+.++.+.+.--++-=..+++++ +.+++++++...+ .|=....+ -.++..||-. +++
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~lla----k~~g~~~~~~~Sl-----~PkSvTTpiAm~vs~~iGGip-~lt 149 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLA----KLFGLSPELILSL-----LPKSVTTPIAMEVSESIGGIP-ALT 149 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHh-----cccccccHHHHHHHHhcCCch-HHH
Confidence 467777778899998888876666656677777 5789999887544 46444443 3799999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 014893 231 IVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 231 l~lt~istlla~~~~Pl~l~ll 252 (416)
...+.++-+++-++-|.++..+
T Consensus 150 av~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 150 AVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 43
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.98 E-value=37 Score=35.43 Aligned_cols=184 Identities=18% Similarity=0.313 Sum_probs=90.6
Q ss_pred hhhchHHHHHHHhhhH-HHHHHHHHHHHH---hhcCcchhh---hhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHH
Q 014893 95 NQEFSLVNILKQSNSF-LPHVVLGSTMLA---LVFPPSFTW---FTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167 (416)
Q Consensus 95 ~~~~~~~~~l~~l~~~-l~l~v~~~~~~g---~~~P~~~~~---l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~l 167 (416)
--+.-.++.++.++|+ +|--++.|.+.+ ...|+.+.. +...+-.+++.+.+-+.|++-+.+++++.- +|-.+
T Consensus 17 llG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg-~~l~~ 95 (398)
T TIGR00210 17 LLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGG-KPLLI 95 (398)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhCh-HHHHH
Confidence 4556677888888888 777777765531 222443321 111222234333444788888888876432 22222
Q ss_pred HHHHHH-HHhHHHHHHHHHHhhhhhccCCChHHHHHHHH--HhcCCchhhH----HHHHHhcC--CCchhhHHHHHHHHH
Q 014893 168 FAGYVG-QFVVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCVSGAQLS----NYATFLTD--PPLAPLSIVMTSLST 238 (416)
Q Consensus 168 l~~l~~-~fvi~Plla~~l~~l~~~~~~l~~~la~GliL--~a~~Pg~~~s----~v~T~la~--Gn~aaLsl~lt~ist 238 (416)
...+.. -.+..=.++.+++ ..++++|.+ |++. ++..-|-..+ +.+.+..| +-. .++++..++..
T Consensus 96 ~~~~~~~l~~~Qn~vGv~la----~~~gl~P~~--Gll~gsi~~~GGHGTAaA~g~~f~e~~G~~~a~-~lgla~AT~GL 168 (398)
T TIGR00210 96 FLATAVGFLVIQNAVGIGMA----SLLGQAPLM--GLLAGSITLSGGHGTGAAWSPVFYDNYGFRNAT-EIAIACATFGL 168 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCChHH--HHHhhCccCCCCCcHHHHHHHHHHHHcCchhHH-HHHHHHHHHHH
Confidence 222210 1112223344454 467888854 5553 3333333333 34433222 222 45555556666
Q ss_pred HHHHHH-HHHHHHHhhCCcc----------------------ccChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014893 239 ATAVFV-TPLLSLLLIGKRL----------------------PVDVKGMVSSILQIVVVPIAAGLLLNRFFP 287 (416)
Q Consensus 239 lla~~~-~Pl~l~ll~g~~v----------------------~vd~~~i~~~Ll~~vllPl~lG~llr~~~p 287 (416)
+.+.+. .|+.=.+.-..+. ..+..+++.++ ..+.+-+.+|..+..+..
T Consensus 169 v~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~ 239 (398)
T TIGR00210 169 VFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVA 239 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 666554 4555443211000 02233445554 467777778887777654
No 44
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=87.93 E-value=8 Score=35.48 Aligned_cols=55 Identities=25% Similarity=0.233 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHh
Q 014893 324 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRF 383 (416)
Q Consensus 324 ~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~ 383 (416)
.++...+..++.+..+..+++.++|.+++.++ ..+...-+|.++.+-++.-|...
T Consensus 82 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-----~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 82 GGLKLLLLGVIITLVPLLIALVIGRYLFKLNP-----GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHccccCcHHHHHHHHh
Confidence 36677788888999999999999986777752 34444455555555555555544
No 45
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=87.54 E-value=36 Score=34.74 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=65.5
Q ss_pred HHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcC
Q 014893 144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD 223 (416)
Q Consensus 144 mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~ 223 (416)
++++.|. .-|+...+.|||..+.|...|+.+. .++..+ ..++.++..+.++-+++.+=|.++-.+-++++
T Consensus 75 IF~GIGA---mtDFgpllanP~~~llGaaAQ~Gif--~t~~~A----~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA- 144 (360)
T PF03977_consen 75 IFMGIGA---MTDFGPLLANPKTLLLGAAAQFGIF--ATFLGA----ILLGFTPKEAASIGIIGGADGPTSIFVSSKLA- 144 (360)
T ss_pred HHHHHhH---HHhhHHHHhCHHHHHHHHHHHHhHH--HHHHHH----HHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-
Confidence 4446666 4456667899999999999999875 333444 34577888888888888876655444445544
Q ss_pred CCchhhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 014893 224 PPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (416)
Q Consensus 224 Gn~aaLsl~lt~is-tlla~~~~Pl~l~ll~g 254 (416)
.|. --.++..+=| .-+.++.-|-.++++.-
T Consensus 145 p~L-lgpIaVaAYsYMaLvPiiqPpimklLtt 175 (360)
T PF03977_consen 145 PHL-LGPIAVAAYSYMALVPIIQPPIMKLLTT 175 (360)
T ss_pred HHH-HHHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence 344 2334444444 45667778888888753
No 46
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=85.04 E-value=52 Score=34.26 Aligned_cols=191 Identities=17% Similarity=0.276 Sum_probs=99.8
Q ss_pred hhhhhhhhhchHHHHHHHhhhH-HHHHHHHHHHHHhhcCcchhhhh-----hhhHHHHHHHHHH-HhcCCCCHHHHHHHh
Q 014893 89 ESNQVLNQEFSLVNILKQSNSF-LPHVVLGSTMLALVFPPSFTWFT-----ARYYAPALGFLMF-AVGVNSSEKDFIEAF 161 (416)
Q Consensus 89 ~~~~~~~~~~~~~~~l~~l~~~-l~l~v~~~~~~g~~~P~~~~~l~-----~~~i~~~l~~mmf-~~Gl~l~~~~l~~~~ 161 (416)
++.-++--++-++|.++.++|+ .|--++.+.+.+++.|-...... +..+.-.+.+++| .+|++-+++.+++.-
T Consensus 13 ~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgG 92 (404)
T COG0786 13 LAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGG 92 (404)
T ss_pred HHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcC
Confidence 3444556778889999999988 77777777777666665432110 1112223344444 799999999998664
Q ss_pred hchhHHHHHHHHHH-hHHHHHHHHHHhhhhhccCCChHHHHHHHH--HhcCCch----hhHHHHHHhcCCCch-hhHHHH
Q 014893 162 KRPAAIFAGYVGQF-VVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCVSGA----QLSNYATFLTDPPLA-PLSIVM 233 (416)
Q Consensus 162 ~~p~~ll~~l~~~f-vi~Plla~~l~~l~~~~~~l~~~la~GliL--~a~~Pg~----~~s~v~T~la~Gn~a-aLsl~l 233 (416)
|.-.. ......-+ ++-=.++.+++ .+.+++|.+ |++. ++..-|- .+++.+.++ |-+.| .++++.
T Consensus 93 k~l~i-f~~~a~~l~~~Qn~igi~la----~~lgidpl~--gllagsIsl~GGHGtaAA~~~~f~~~-G~~~A~~va~A~ 164 (404)
T COG0786 93 KKLAI-FLATAAGLAVLQNFIGIGLA----KLLGLDPLI--GLLAGSISLVGGHGTAAAWGPTFEDL-GAEGATEVAMAS 164 (404)
T ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHH----HHcCccHHH--HHHhcceeecCCCchHHHHHHHHHhc-CCcchHHHHHHH
Confidence 44221 11111111 11112233444 456776654 5553 2222222 244556665 33330 233344
Q ss_pred HHHHHHHHHHH-HHHHHHHhhC---------C---------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014893 234 TSLSTATAVFV-TPLLSLLLIG---------K---------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 288 (416)
Q Consensus 234 t~istlla~~~-~Pl~l~ll~g---------~---------------~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~ 288 (416)
.+...+.+.+. .|+-=++.-. + .-.++...+..++ .++.+.+.+|..+..+.++
T Consensus 165 ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~i~i~~~vG~~i~~~l~~ 243 (404)
T COG0786 165 ATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETL-AIIAICLAVGKIINQLLKS 243 (404)
T ss_pred HHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 44444544442 3655444310 0 0124444555554 4788888888888877653
No 47
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=83.63 E-value=58 Score=33.66 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=63.3
Q ss_pred HHHHhcCCCCHHHHHHHhhchhHHHH-HHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhc
Q 014893 144 LMFAVGVNSSEKDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT 222 (416)
Q Consensus 144 mmf~~Gl~l~~~~l~~~~~~p~~ll~-~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la 222 (416)
++++.|.= -|+...+.|||..+. |...|+.+.= ++..+ ..++.+...+.++-+++.+=|.++-.+-++++
T Consensus 111 IFlGIGAM---tDFgpllanP~~~ll~gaaAQ~GiF~--t~~~A----~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLA 181 (399)
T TIGR03136 111 LFFGIGAM---SDISFILARPWASITVALFAEMGTFA--TLVIG----YYCGLTPGEAAAVGTIGGADGPMVLFASLILA 181 (399)
T ss_pred HHHhccHH---hcchHHHhChHHHHHHHHHHHhhHHH--HHHHH----HHcCCCHHHhhHHhhcccCCccHHHHHHHhhh
Confidence 44466764 455666799999988 8999998653 33333 34567777777777788776655444445554
Q ss_pred CCCchhhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 014893 223 DPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (416)
Q Consensus 223 ~Gn~aaLsl~lt~is-tlla~~~~Pl~l~ll~g 254 (416)
-|. --+++..+=| .-+.++.-|-.++++.-
T Consensus 182 -p~L-lg~IaVAAYsYMaLVPiiqPpimklLtt 212 (399)
T TIGR03136 182 -KDL-FVPISIIAYLYLSLTYAGYPYLIKLLVP 212 (399)
T ss_pred -hHh-HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 333 2344444444 34566777888887753
No 48
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=82.91 E-value=58 Score=33.18 Aligned_cols=135 Identities=11% Similarity=0.017 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhhc-Ccchhhhhh--hh-HHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHH
Q 014893 111 LPHVVLGSTMLALVF-PPSFTWFTA--RY-YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFG 186 (416)
Q Consensus 111 l~l~v~~~~~~g~~~-P~~~~~l~~--~~-i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~ 186 (416)
+.+.+++|+++|-.+ |+.-+..++ .+ ....+-+-.-.+|.+++++|+.+.=.+ .+...+..-.... ++++.++
T Consensus 34 ~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~--~l~~~~~~v~~~~-~~~~~~g 110 (335)
T TIGR00698 34 LFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPN--EIVADTLILTSTF-FLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHH--HHHHHHHHHHHHH-HHHHHHH
Confidence 345666676666533 222222210 11 123455555568999999999765332 2222222222222 2234444
Q ss_pred hhhhhccCCChHHHHHHHHHhcCCchhhHHH-H---HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 187 TISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-A---TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (416)
Q Consensus 187 ~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v-~---T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~ 253 (416)
+ +.+++|++.+ -++=.+.+=||.++.. . .+--+-|. ++++..+.+-..+++++.|.+-.++.
T Consensus 111 ~---k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~-a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 111 S---SRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKV-SVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred H---HHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccce-eeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 1 3578877754 3333444445554433 2 22334456 79999999999999999999987663
No 49
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=82.29 E-value=62 Score=33.24 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHH-H
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-A 218 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v-~ 218 (416)
.-.++.-..|++++-..+++..|--...++..+....+.=..++++. ...++|... .+++.+|||...-. .
T Consensus 242 a~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~----~~~~i~~~t----a~La~sPGGl~~ma~~ 313 (352)
T COG3180 242 AQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLS----WLTGIDLNT----AYLATSPGGLDTMAAI 313 (352)
T ss_pred HHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHH----HhcCCCHHH----HHHHcCCCcHHHHHHH
Confidence 33445556899999999887766555566656666666666677776 456665532 35899999998764 6
Q ss_pred HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 219 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 219 T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
+...+-|. +.-.++..+=.+.-.++.|.+.+.+
T Consensus 314 A~~l~ad~-a~V~a~q~lRll~il~i~p~l~r~l 346 (352)
T COG3180 314 AAALGADP-AFVMALQVLRLLFILLLGPALARFL 346 (352)
T ss_pred HHHcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666798 8888888888887777778877765
No 50
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=81.79 E-value=48 Score=31.40 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChH
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~g--------~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~l 300 (416)
..++.+.+-++.+++.-++.-.++.. .+.++++..+...++.+-.+=.+.-+.+|++.|++.+....+++.+
T Consensus 41 mGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI 120 (202)
T PRK02830 41 LGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLPLI 120 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45555555566666665655544322 1244455555555544445556678889999999999999998876
Q ss_pred HHHHHHH
Q 014893 301 SVLVTAC 307 (416)
Q Consensus 301 s~l~lll 307 (416)
..=|.++
T Consensus 121 ~~NCaVL 127 (202)
T PRK02830 121 TVNCAIF 127 (202)
T ss_pred HHHHHHH
Confidence 5444333
No 51
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=79.98 E-value=17 Score=37.12 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHh-HHHHHHHcccCChHH----HHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 273 VVPIAAGLLLNRFF-PRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 347 (416)
Q Consensus 273 llPl~lG~llr~~~-p~~~~~i~~~l~~ls----~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~ 347 (416)
++-+++|+.++... ++..++.++-....+ .+++++. -+..+-+.+.+ .++..++..+......+..+++++
T Consensus 35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLl---G~~l~~~~i~~-~G~~~l~~~~~~v~~~~~~~~~~g 110 (335)
T TIGR00698 35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLY---GFRLTFPYIAD-VGPNEIVADTLILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHH---CccccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566899888743 333333443322222 2222221 11222233433 455444555555666778889998
Q ss_pred HHhhccccccchhhhheeeecccccHHHHHHHHH
Q 014893 348 GLAFAEAHDVKALQRTLSYETGMQSSLLALALAN 381 (416)
Q Consensus 348 ~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~ 381 (416)
++.++.++ +.+.-++-.++.-=.+-.++.+-
T Consensus 111 ~k~l~l~~---~~~~Lia~GtsICGaSAi~A~a~ 141 (335)
T TIGR00698 111 SSRLKLDK---QMSILLGAGSSICGAAAVAAIEP 141 (335)
T ss_pred HHHhCCCh---hHHHHHHcchhHHHHHHHHHhcc
Confidence 65667764 45555555555544444444443
No 52
>COG0679 Predicted permeases [General function prediction only]
Probab=79.92 E-value=68 Score=32.00 Aligned_cols=234 Identities=18% Similarity=0.184 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhH-H
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS-N 216 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s-~ 216 (416)
..++..+.|..-.+.+.+.. ++.+.+...++..++.. +..+.+++ ..++.+.+...+....+.-|....- .
T Consensus 42 ~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~N~g~lg~ 113 (311)
T COG0679 42 YVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAF-FLLALIGR---FLFKLDKRETVIFALASAFPNIGFLGL 113 (311)
T ss_pred HHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHH-HHHHHHHH---HHhccchhhHHHHHHHHHhcccchhhH
Confidence 34677777777676666654 34454555455444443 44445554 4566666666677777777755533 2
Q ss_pred HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh---hCCccccChHHHHHHHHH-HHHHHHHHHHHHHHH---hHHH
Q 014893 217 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL---IGKRLPVDVKGMVSSILQ-IVVVPIAAGLLLNRF---FPRI 289 (416)
Q Consensus 217 v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll---~g~~v~vd~~~i~~~Ll~-~vllPl~lG~llr~~---~p~~ 289 (416)
-.+...=||. .++....... +..+.+..+.... .+..-+...+...++++. =.++-.++|.+++.. .|+.
T Consensus 114 pi~~~~~G~~-gl~~~~i~~~--~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~ 190 (311)
T COG0679 114 PVALSLFGEK-GLAYAVIFLI--IGLFLMFTLGVILLARSGGGTNKSLLSVLKKLLTNPLIIALILGLLLNLLGISLPAP 190 (311)
T ss_pred HHHHHHcCcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHH
Confidence 2444444554 3444333222 2222222222111 122222344444554432 233344556666643 3554
Q ss_pred HHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHH--HHHHHHHHHHHHHHHHHHhhccccccchhhhheeee
Q 014893 290 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLL--IITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYE 367 (416)
Q Consensus 290 ~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~--~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~ 367 (416)
.++..+.+...+.-+.++.++.........-.+......... .++.+++.+.+++. ++.+. .+..++..+
T Consensus 191 ~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~-----~~l~~---~~~~v~vl~ 262 (311)
T COG0679 191 LDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVAKL-----LGLSG---LALQVLVLL 262 (311)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHH-----cCCCh---HHHHHHHHH
Confidence 444444444333333444444444442111111111111112 33455555554443 34454 455677777
Q ss_pred cccccHHHHHHHHHHhCCCCcch
Q 014893 368 TGMQSSLLALALANRFFQDPLVS 390 (416)
Q Consensus 368 tg~rN~~Lal~lA~~~f~~p~~a 390 (416)
+++--...+..+|..+-.|++.+
T Consensus 263 ~a~P~A~~~~v~a~~~~~~~~la 285 (311)
T COG0679 263 SAMPTAVNAYVLARQYGGDPRLA 285 (311)
T ss_pred hhCcHHhHHHHHHHHhCCChHHH
Confidence 78888888888888866666543
No 53
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.46 E-value=0.18 Score=51.24 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHH-HHHHHHHhHHHHHHHHHHhhh-hhccCCChHHHHHHHHHhcCCch
Q 014893 135 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIF-AGYVGQFVVKPILGYIFGTIS-VSVFGLPTPIGAGIMLVSCVSGA 212 (416)
Q Consensus 135 ~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll-~~l~~~fvi~Plla~~l~~l~-~~~~~l~~~la~GliL~a~~Pg~ 212 (416)
......+.++||..|+++|.+++++..++.-.+. .+....+++ .++.+...+ ..-.+....+..|.++....|+.
T Consensus 50 ~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~ 126 (380)
T PF00999_consen 50 LLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFIL---VGFLLSFFLFILGLSWAEALLLGAILSATSPAI 126 (380)
T ss_dssp SSHHHHS--SSHHHHTTGGGG----------------------------------------------TTHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhH---HHHHHHHhhccchhhhHHHhhhHHhhhcccccc
Confidence 3445688999999999999999987766633221 112222221 122222000 01123344455666665555555
Q ss_pred hhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014893 213 QLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRF 285 (416)
Q Consensus 213 ~~s~v-~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~ 285 (416)
..... =....+++...+....+.++.+++.+...+..... ++....+.......++..+..=.+.|...++.
T Consensus 127 v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (380)
T PF00999_consen 127 VSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFGWL 199 (380)
T ss_dssp HHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT----------------------------------------
T ss_pred hhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccchH
Confidence 44433 23344555535566777888888888888877766 44444555544444444444444444444433
No 54
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=78.80 E-value=1.1e+02 Score=33.53 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhc---Ccc-hhhhhhh-hHHHHHHHHHHHhcCCCCHHHHHHHhhchhH-HHHHHHHHHhHHHHHHHHH
Q 014893 112 PHVVLGSTMLALVF---PPS-FTWFTAR-YYAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIF 185 (416)
Q Consensus 112 ~l~v~~~~~~g~~~---P~~-~~~l~~~-~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~-ll~~l~~~fvi~Plla~~l 185 (416)
.+.+++|+++|... +.. ...+.+. ....++..++|-.|.+++.+++++.++.-.. ...|.+.+.+++-...+.+
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777887542 211 0112222 2345788999999999999999977655332 2344555555555555544
No 55
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.30 E-value=46 Score=36.71 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChH--HHHHHHHHhcCCchhhHHH
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTP--IGAGIMLVSCVSGAQLSNY 217 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~--la~GliL~a~~Pg~~~s~v 217 (416)
++.+.+...|+++|+..+. .+|..++..++.-++..++.+++.++ .++.+.. ...|+ ..++++-.+-+
T Consensus 273 ll~lFFi~vG~~id~~~l~---~~~~~il~~~~~~~~~K~~~~~~~~~----~~g~~~~~a~~~gl---~L~~~Gef~~v 342 (621)
T PRK03562 273 LLGLFFIAVGMSIDFGTLL---ENPLRILILLLGFLAIKIAMLWLLAR----PLGVPRKQRRWFAV---LLGQGGEFAFV 342 (621)
T ss_pred HHHHHHHHhhhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCHhHHHHHHH---HHhccccHHHH
Confidence 3455555789999987765 34555555555667888888888874 5565443 44454 34556666654
Q ss_pred HHHhcC--C--CchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 218 ATFLTD--P--PLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 218 ~T~la~--G--n~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
....+. | |. .....++ +..+++.+++|++..++
T Consensus 343 l~~~a~~~~~i~~-~~~~~lv-~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 343 VFGAAQMANVLEP-EWAKLLT-LAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHHHCCCCCH-HHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 332221 1 11 2222222 35577777888776653
No 56
>PRK04972 putative transporter; Provisional
Probab=77.63 E-value=17 Score=39.54 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCC--CcchhHHHHH---HH
Q 014893 324 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD--PLVSVPPAIS---TV 398 (416)
Q Consensus 324 ~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~--p~~alp~~iy---~v 398 (416)
.++.+.+..++..++...++++++|++++.+. . ..+..-+|.+...-++.-+...-++ |.+.-+ +.| .+
T Consensus 471 ~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~----~-~~~G~~aG~~t~~~~l~~~~~~~~~~~~~~gYa-~~yp~~~i 544 (558)
T PRK04972 471 VGGQMLIAGLIVSLVPVVICFLFGAYVLRMNR----A-LLFGAIMGARTCAPAMEIISDTARSNIPALGYA-GTYAIANV 544 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----H-HHHHHHhCCCCCcHHHHHHHhhcCCCCcccccH-hHHHHHHH
Confidence 35666666666777777778888877878763 3 4555555656555555544443343 332222 233 33
Q ss_pred HHHHHHHHHHHH
Q 014893 399 IMSLMGFFLVML 410 (416)
Q Consensus 399 ~q~i~~~~la~~ 410 (416)
+..+.+-+++.+
T Consensus 545 l~~l~~~~iv~~ 556 (558)
T PRK04972 545 LLTLAGTLIVIV 556 (558)
T ss_pred HHHHHHHHHHHh
Confidence 445555555443
No 57
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=76.79 E-value=66 Score=30.15 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHH
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~lll 307 (416)
+.+..+.+-++.++..-++.-.+. +..+.++..+..-++.+-.+=.+.-+.++++.|++.+....+++.+..=|.++
T Consensus 40 mGlav~~V~~~s~~~~~~i~~~il--~p~~l~~lr~~~filvIA~~V~~ve~~l~~~~p~ly~~LGiflpLI~tNCaVL 116 (190)
T TIGR01943 40 MGLAVTFVMTLASVISWLVYNFIL--DPLNLEFLRTIVFILVIAALVQFVEMVVRKTSPDLYRALGIFLPLITTNCAVL 116 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHhhhhhHHHHHHHHH
Confidence 444444444444444444433222 33344444444444444445556778899999999999999988765444433
No 58
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=74.20 E-value=26 Score=38.23 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCC
Q 014893 324 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ 385 (416)
Q Consensus 324 ~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~ 385 (416)
.++...+..++..++...+++++++++++.++ ..++..-+|.+...-++.-|...-+
T Consensus 476 ~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~G~~aG~~t~t~~l~~a~~~~~ 532 (562)
T TIGR03802 476 MGLTLFLLGIVVTILPLIITMLIGKYVLKYDP-----ALLLGALAGARTATPALGAVLERAG 532 (562)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhhccCCCcHHHHHHHHhcC
Confidence 45666667777888888888888877777753 3455555555555444444444333
No 59
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=72.94 E-value=1.2e+02 Score=31.26 Aligned_cols=185 Identities=14% Similarity=0.224 Sum_probs=93.1
Q ss_pred hhhchHHHHHHHhhhH-HHHHHHHHHHHHhhcCcchhh-------hhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhH
Q 014893 95 NQEFSLVNILKQSNSF-LPHVVLGSTMLALVFPPSFTW-------FTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAA 166 (416)
Q Consensus 95 ~~~~~~~~~l~~l~~~-l~l~v~~~~~~g~~~P~~~~~-------l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ 166 (416)
=-+.-.++.++.++|+ .|--++.|.+..++ +..... +......+++...+-.+|++.+.+.+++.-|+-..
T Consensus 17 liG~~Lr~ki~~lqk~~IPasvIgGli~~il-~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~ 95 (368)
T PF03616_consen 17 LIGKFLRAKIPFLQKLFIPASVIGGLIFAIL-PLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLI 95 (368)
T ss_pred HHHHHHHHHhHHHHHccCCchHHHHHHHHHH-HHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHH
Confidence 3455567788888888 77777777553333 221111 11111122333333378999999988766443222
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHH--HhcC--CchhhH--HHHHHhcCCCc-hhhHHHHHHHHHH
Q 014893 167 IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIML--VSCV--SGAQLS--NYATFLTDPPL-APLSIVMTSLSTA 239 (416)
Q Consensus 167 ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL--~a~~--Pg~~~s--~v~T~la~Gn~-aaLsl~lt~istl 239 (416)
.........++-=+++.+++ .+++++|.+ |++. ++.. +|+..+ +.+..+.|=+. ..++++..++..+
T Consensus 96 ~~~~~~~~~~~Q~~vG~~la----~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~fe~~~G~~~a~~vg~a~AT~Glv 169 (368)
T PF03616_consen 96 FLLIAIILAFLQNIVGLGLA----KLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPTFEELYGWEGATSVGMAAATFGLV 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhCCCchH--HHHhccccccCCccHHHHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence 11111111222223455555 456777754 5432 2222 333322 34544412121 1466666666666
Q ss_pred HH-HHHHHHHHHHhh-CC-----------------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014893 240 TA-VFVTPLLSLLLI-GK-----------------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFP 287 (416)
Q Consensus 240 la-~~~~Pl~l~ll~-g~-----------------------~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p 287 (416)
.+ ++=.|+.=++.- ++ .-+++..+++..+. ++.+.+.+|..++.+..
T Consensus 170 ~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l~-~i~i~~~~G~~i~~~l~ 241 (368)
T PF03616_consen 170 VGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHLA-LILIAIGLGYIISALLK 241 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 65 444677544321 10 01234556666654 67777888888777654
No 60
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=70.95 E-value=1.4e+02 Score=31.12 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred HHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCC
Q 014893 145 MFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDP 224 (416)
Q Consensus 145 mf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~G 224 (416)
+++.|.- -|+...+.|||.++.|...|+.+.--+...+..-.+...+.+..-+.++-+++.+=|.++-.+-++++ -
T Consensus 141 F~GIGAM---tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P 216 (433)
T PRK15477 141 FMGVGAM---TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-P 216 (433)
T ss_pred HHhccHH---hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-h
Confidence 3456663 45666679999999999999987633322221000001245666666666677766554444444444 3
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 014893 225 PLAPLSIVMTSLS-TATAVFVTPLLSLLLI 253 (416)
Q Consensus 225 n~aaLsl~lt~is-tlla~~~~Pl~l~ll~ 253 (416)
|. --+++..+=| .-+.|+.-|-.+.++.
T Consensus 217 ~L-lg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15477 217 EL-LGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred Hh-HHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 43 2344444444 3456667777787775
No 61
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=70.79 E-value=1.4e+02 Score=31.10 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred HHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCC
Q 014893 145 MFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDP 224 (416)
Q Consensus 145 mf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~G 224 (416)
+++.|.- -|+...+.|||.++.|...|+.+.--+...+..-.+...+.+..-+.++-+++.+=|.++-.+-++++ -
T Consensus 141 F~GIGAM---tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P 216 (433)
T PRK15476 141 FMGVGAM---TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-P 216 (433)
T ss_pred HHhccHH---hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-h
Confidence 3456663 45666679999999999999987633322221000001245666666666677766554444444444 3
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 014893 225 PLAPLSIVMTSLS-TATAVFVTPLLSLLLI 253 (416)
Q Consensus 225 n~aaLsl~lt~is-tlla~~~~Pl~l~ll~ 253 (416)
|. --+++..+=| .-+.|+.-|-.+.++.
T Consensus 217 ~L-lg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15476 217 EL-LGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred Hh-HHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 43 2344444444 3456667777787775
No 62
>PRK09903 putative transporter YfdV; Provisional
Probab=70.14 E-value=1.2e+02 Score=30.12 Aligned_cols=251 Identities=13% Similarity=0.073 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchh-hH-
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQ-LS- 215 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~-~s- 215 (416)
..++..++|....+.+.++..+ +........+. ++..-++++.+++ ...+.+.+-.....+.+..+-.. ..
T Consensus 42 ~v~lPalif~s~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~N~gf~G~ 114 (314)
T PRK09903 42 NYALPAALFVSITRANREMIFA---DTRLTLVSLVV-IVGCFFFSWFGCY---KFFKRTHAEAAVCALIAGSPTIGFLGF 114 (314)
T ss_pred HHHHHHHHHHHHHhCCHHHHHh---hhhHHHHHHHH-HHHHHHHHHHHHH---HHhcCCcchhhHhhhhhcCCCcccccH
Confidence 3466677776666766555432 33333333332 2222245555543 23344432222223333333222 22
Q ss_pred HHHHHhcCCCchhh-HHHHHHHHHHHHHHHHHHHHHHhhCC-c--ccc-ChHHHHHHHH-HHHHHHHHHHHHHHHH---h
Q 014893 216 NYATFLTDPPLAPL-SIVMTSLSTATAVFVTPLLSLLLIGK-R--LPV-DVKGMVSSIL-QIVVVPIAAGLLLNRF---F 286 (416)
Q Consensus 216 ~v~T~la~Gn~aaL-sl~lt~istlla~~~~Pl~l~ll~g~-~--v~v-d~~~i~~~Ll-~~vllPl~lG~llr~~---~ 286 (416)
++..... ||. +. ++...........+..|.....+... . -+- ...+.+++++ --.++..++|+.++.. .
T Consensus 115 Pl~~~~~-G~~-~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~l 192 (314)
T PRK09903 115 AVLDPIY-GDS-VSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPVLATILVLVGVKI 192 (314)
T ss_pred HHHHHHc-Cch-hhhhhHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHhchHHHHHHHHHHHHHcCCCC
Confidence 3344444 443 22 23222233334455666665555321 1 011 1122233321 1345556666665543 3
Q ss_pred HHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheee
Q 014893 287 PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSY 366 (416)
Q Consensus 287 p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~ 366 (416)
|+..++.-+.+.....-..++.++..++........+..+....=.++.+++.+.+.+ +++.++ .+..++..
T Consensus 193 P~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~~~~~~~~Kli~~P~i~~~~~~-----~~~l~~---~~~~v~vl 264 (314)
T PRK09903 193 PAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLILMPLALLLVGM-----ACHLNS---EHLQMMVL 264 (314)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCc---HHHHHHHH
Confidence 6554443333333222233334444444332111111111111112333443333222 224444 67788889
Q ss_pred ecccccHHHHHHHHHHhCCCCcchhHH-HHHHHHHHHHHH
Q 014893 367 ETGMQSSLLALALANRFFQDPLVSVPP-AISTVIMSLMGF 405 (416)
Q Consensus 367 ~tg~rN~~Lal~lA~~~f~~p~~alp~-~iy~v~q~i~~~ 405 (416)
++++--...+..+|..|-.|++.+--. ++.++...++-.
T Consensus 265 ~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlp 304 (314)
T PRK09903 265 AGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAP 304 (314)
T ss_pred HHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887666643332 333444434333
No 63
>COG2855 Predicted membrane protein [Function unknown]
Probab=69.77 E-value=43 Score=34.13 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHcccCChHHHHHH-HHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 273 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF 351 (416)
Q Consensus 273 llPl~lG~llr~~~p~~~~~i~~~l~~ls~l~l-lliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~ 351 (416)
++-+++|+.++ .+++..++.++-....+...+ +-++..-+..|.+.+.+ .|........+.-...+.++|+++| ++
T Consensus 41 ~lAIllGi~l~-~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-~G~~~v~~~~~~l~~t~~~~~~lg~-~l 117 (334)
T COG2855 41 TLAILLGILLG-ILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-VGGSGVLIIAITLSSTFLFAYFLGK-LL 117 (334)
T ss_pred HHHHHHHHHHh-ccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 34456788888 333333344433322232222 11222223344444444 4555555566666778999999998 56
Q ss_pred cccc
Q 014893 352 AEAH 355 (416)
Q Consensus 352 ~~~~ 355 (416)
+.|+
T Consensus 118 gld~ 121 (334)
T COG2855 118 GLDK 121 (334)
T ss_pred CCCH
Confidence 7753
No 64
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=69.49 E-value=1.5e+02 Score=30.90 Aligned_cols=104 Identities=19% Similarity=0.249 Sum_probs=59.1
Q ss_pred HHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCC
Q 014893 145 MFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDP 224 (416)
Q Consensus 145 mf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~G 224 (416)
+++.|.- -|+...+.|||.++.|...|+.+.--+...+..-.+...+.+..-+.++-+++.+=|.++-.+-++++ -
T Consensus 141 F~GIGAM---tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P 216 (433)
T PRK15475 141 FMGVGAM---TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-P 216 (433)
T ss_pred HHhccHH---hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-h
Confidence 3356663 45666679999999999999987633322221000001245666666666677766554444444444 3
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 014893 225 PLAPLSIVMTSLS-TATAVFVTPLLSLLLI 253 (416)
Q Consensus 225 n~aaLsl~lt~is-tlla~~~~Pl~l~ll~ 253 (416)
|. --+++..+=| .-+.|+.-|-.+.++.
T Consensus 217 ~L-lg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15475 217 EL-LGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred Hh-HHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 43 2344444444 3456667788888775
No 65
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=68.16 E-value=1.9e+02 Score=31.73 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChH--HHHHHHHHhcCCchhhHHH
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTP--IGAGIMLVSCVSGAQLSNY 217 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~--la~GliL~a~~Pg~~~s~v 217 (416)
++.+.+...|+++|+..+. .+|..++..++.-+++.++..++.+ ..++.+.. ...|+ ...|+|-.+-+
T Consensus 270 ll~lFFi~vGm~id~~~l~---~~~~~il~~~~~~l~~K~~~~~~~~----~~~g~~~~~al~~g~---~L~~~Gef~~v 339 (601)
T PRK03659 270 LLGLFFISVGMALNLGVLY---THLLWVLISVVVLVAVKGLVLYLLA----RLYGLRSSERMQFAG---VLSQGGEFAFV 339 (601)
T ss_pred HHHHHHHHHhhhccHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHH---HHhccccHHHH
Confidence 4555556789999998775 4565555555666788888888877 35666653 33443 34577766654
Q ss_pred HHHhc--CCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 218 ATFLT--DPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 218 ~T~la--~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
....+ .|-..+-.........+++.+++|++..++
T Consensus 340 l~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 340 LFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32222 111101111222444566666777766543
No 66
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=67.47 E-value=1.5e+02 Score=30.26 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=56.6
Q ss_pred HHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCC------ChHHHHHHHHHhcCCchhhHHH
Q 014893 144 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSNY 217 (416)
Q Consensus 144 mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l------~~~la~GliL~a~~Pg~~~s~v 217 (416)
++++.|.- -|+...+.||+.++.|...|+.+.--+ ..+ ..++. +...+.++-+++.+=|.++-.+
T Consensus 69 IFlGIGAm---tDFgpllanP~~~llGaaAQ~GiF~t~--~~A----~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~ 139 (354)
T TIGR01109 69 IFMGIGAL---TDFGPLLANPRTLLLGAAAQFGIFATV--FGA----LTLNFFGIISFSLPQAAAIGIIGGADGPTAIYL 139 (354)
T ss_pred HHHhccHH---hhhHHHHhChHHHHHHHHHHhhHHHHH--HHH----HHhCCCcccccChhhceeeeeeccCCCchhhhh
Confidence 44466663 456666799999999999999765333 333 12333 3445555556666654443333
Q ss_pred HHHhcCCCchhhHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 014893 218 ATFLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG 254 (416)
Q Consensus 218 ~T~la~Gn~aaLsl~lt~is-tlla~~~~Pl~l~ll~g 254 (416)
-++++ -|. --+++..+=| .-+.++.-|-.+.++..
T Consensus 140 s~~la-p~L-lg~IaVAAYsYMaLvPiiqPpimklLtt 175 (354)
T TIGR01109 140 SGKLA-PEL-LAAIAVAAYSYMALVPIIQPPIMKALTS 175 (354)
T ss_pred Hhhhh-hHH-HHHHHHHHHHHHHHHhcccchHHHhhcC
Confidence 34443 333 2333333333 34556667777777753
No 67
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=65.88 E-value=1.2e+02 Score=28.62 Aligned_cols=78 Identities=17% Similarity=0.323 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHH
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 304 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~----g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~ 304 (416)
..++.+.+-++.++..-++.-.++. .+.+++++..+...++.+-.+=.+.-+.+|++.|++.+....+++.+..=|
T Consensus 42 mGlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~tNC 121 (199)
T PRK12456 42 LGLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTIHC 121 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 4444555555555555555444332 223445454444444444444466788899999999999998888765434
Q ss_pred HH
Q 014893 305 TA 306 (416)
Q Consensus 305 ll 306 (416)
.+
T Consensus 122 aV 123 (199)
T PRK12456 122 AI 123 (199)
T ss_pred HH
Confidence 33
No 68
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=63.79 E-value=1.5e+02 Score=28.92 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh-------C---CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCC
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLI-------G---KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLP 298 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~-------g---~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~ 298 (416)
+.+..+.+.++.+++.-++.-.+.. + +.+..++..+..-++.+-.+=.++-+.++++.|++.+.+..+++
T Consensus 48 MGlAvtfVl~~S~~i~~~l~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlvIA~~Vq~vem~L~a~~p~Ly~aLGifLP 127 (244)
T PRK01061 48 LGMSVALVLTVTGSINWFVHAFITGPGALTWLSPALANVNLSFLELIIFIVVIAAFTQILELLLEKVSRNLYLSLGIFLP 127 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 4444455555555555555433321 1 12344555555544444445566788899999999999999988
Q ss_pred hHHHHHHH
Q 014893 299 PLSVLVTA 306 (416)
Q Consensus 299 ~ls~l~ll 306 (416)
.+..=|.+
T Consensus 128 LIttNCaV 135 (244)
T PRK01061 128 LIAVNCAI 135 (244)
T ss_pred HHHHHHHH
Confidence 76544433
No 69
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=63.26 E-value=1.4e+02 Score=28.31 Aligned_cols=79 Identities=22% Similarity=0.304 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh--------CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChH
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLI--------GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 300 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~--------g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~l 300 (416)
..++.|.+-++.+++.-++.-.+.. .+.++..+..+..-++.+-.+=.+.-+.+|++.|++.+....+++.+
T Consensus 40 mGlAvtfV~~~s~~~~~~i~~~il~p~~~~~~~~~~~~l~~Lr~~~fIlvIA~~V~~vem~l~a~~p~ly~~LGiflpLI 119 (200)
T TIGR01940 40 LGVAVTFVLTITVPINNLIYTYILKDGALSWGGPAEVDLSFLELITFIGVIAALVQILEMVLERFSPSLYNALGIFLPLI 119 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 4445555555555555555444331 11244444444444444444445678889999999999999888876
Q ss_pred HHHHHHH
Q 014893 301 SVLVTAC 307 (416)
Q Consensus 301 s~l~lll 307 (416)
..=|.++
T Consensus 120 ~tNCaVL 126 (200)
T TIGR01940 120 TVNCAIF 126 (200)
T ss_pred HHHHHHH
Confidence 5444333
No 70
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=62.91 E-value=29 Score=35.25 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHh
Q 014893 137 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (416)
Q Consensus 137 i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~ 187 (416)
+...+.+..|..|.+++..++.+. .+..++++ +.+.++.+.+.+.+.+
T Consensus 201 i~~lLp~~~~~lG~~l~lq~i~~~--G~~GilL~-~~~~~~t~~~~~~~~R 248 (326)
T PRK05274 201 VPVLIPFFAFALGNGIDLGTIITA--GLSGILLG-VAVVAVTGIPLYLADR 248 (326)
T ss_pred cEEEHHHHHHHHhcceeHhHHHhc--CCcchhhh-hhHhhccchhhHhHhh
Confidence 334667777778888888777533 23333332 2344555666777775
No 71
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=62.70 E-value=52 Score=33.11 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=32.6
Q ss_pred HHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHH
Q 014893 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQF 175 (416)
Q Consensus 118 ~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~f 175 (416)
+.++|-+-|++-+.+. +..++.+.++-|..|.++|++++.+. -...+++++.+.+
T Consensus 181 G~ilGNLD~~~r~fl~-~~~~~lIpFf~FaLGaginl~~i~~a--Gl~GIlLGl~v~~ 235 (314)
T TIGR00793 181 GFALGNLDPELRDFFS-KAVQTLIPFFAFALGNTIDLGVIIQT--GLLGILLGVSVII 235 (314)
T ss_pred HHHHhcCCHHHHHHhc-cCCCeeeehhhhhhcCCCCHHHHHHh--CcchHHHHHHHHH
Confidence 4444544444433332 44556788888999999999888533 1234555554433
No 72
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=61.55 E-value=2e+02 Score=29.70 Aligned_cols=127 Identities=17% Similarity=0.278 Sum_probs=66.4
Q ss_pred HHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhh---hccCCChHHHHHHHHHhcCCchhhHHHHH-------------
Q 014893 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISV---SVFGLPTPIGAGIMLVSCVSGAQLSNYAT------------- 219 (416)
Q Consensus 156 ~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~---~~~~l~~~la~GliL~a~~Pg~~~s~v~T------------- 219 (416)
++.|-++.-..+.++...-+...|.+...+...+. ...+.||....+-++..=+-|-..+.-++
T Consensus 34 ~FeeGi~aMG~lalsm~GI~~laP~ls~~l~~ii~Pi~~~lgaDpsmfa~siLA~DMGGY~LA~~la~~~~~~~fsG~il 113 (372)
T PRK15086 34 QFEEGIMAMGPLALAMVGIMALAPVLAHVLGPVIIPIYEALGADPSMFATTLLAVDMGGYQLAKELAGDPEAWLFSGLIL 113 (372)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCcCHHHHHHHhcChhhHHHHHHHH
Confidence 34444444444555556566666666666553211 23566777666555443333332222221
Q ss_pred -----------------HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHH
Q 014893 220 -----------------FLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLL 282 (416)
Q Consensus 220 -----------------~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~ll 282 (416)
-+-+-|. .+ .....+.+++++|.-... .|-...+|+..++.+++-++++-++++..+
T Consensus 114 gsmlG~TIvFtIPVaLgii~k~D~-~y----la~Gil~GiitIPiG~~v-ggl~~g~~~~~il~NL~Piii~~illa~GL 187 (372)
T PRK15086 114 GSMMGATIVFTIPVALGIIEKEDR-KY----LALGVLAGIITIPIGCLI-GGLVAGFDFALILRNLIPVIIFAILLALGL 187 (372)
T ss_pred HHhccceEEeeHHhhHhhcchhhH-HH----HHHHHHHHhHhhcHHHHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 1111111 11 222334444445543321 122246888899999999999999998888
Q ss_pred HHHhHH
Q 014893 283 NRFFPR 288 (416)
Q Consensus 283 r~~~p~ 288 (416)
+++-.+
T Consensus 188 ~~~p~~ 193 (372)
T PRK15086 188 KFIPEK 193 (372)
T ss_pred HHHHHH
Confidence 766433
No 73
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=60.52 E-value=58 Score=32.90 Aligned_cols=127 Identities=18% Similarity=0.234 Sum_probs=60.0
Q ss_pred HHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCCh
Q 014893 118 STMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 197 (416)
Q Consensus 118 ~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~ 197 (416)
++++|-+.|+.-+.+. +..+..+.++-|..|.++|++++.+. -...+++++.+..+- -...+..-++ ..+-+.
T Consensus 181 G~iLGNLD~~~r~fl~-~~~~~lIPF~~f~lGa~inl~~i~~a--Gl~GIlLgv~~~~vt-g~~~~~~dr~---i~~~~g 253 (314)
T PF03812_consen 181 GMILGNLDPDFRKFLA-PGVPILIPFFGFALGAGINLSNIIKA--GLSGILLGVIVVVVT-GIPLYLADRL---ILKGNG 253 (314)
T ss_pred HHHHhcCCHHHHHHHh-cCCCeeeehhhhhhcCCCCHHHHHHh--CcchHHHHHHHHHHH-hHHHHHHHHH---HcCCCC
Confidence 4445555444433332 44456788888999999999988643 233455555543332 2223443331 122121
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHhcCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 198 PIGAGIMLVSCVSGAQLSNYATFLTDPPL---APLSIVMTSLSTATAVFVTPLLSLLLI 253 (416)
Q Consensus 198 ~la~GliL~a~~Pg~~~s~v~T~la~Gn~---aaLsl~lt~istlla~~~~Pl~l~ll~ 253 (416)
.+ |...-..+--+.+.+..-..++... ++.++.....+.++..+++|++..++.
T Consensus 254 -~a-G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 254 -VA-GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred -ce-eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2222111111111122222222111 145566666667777777777766553
No 74
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=60.31 E-value=2e+02 Score=29.27 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=88.6
Q ss_pred HhHHHHHHHHHHhhhhhccCCChHHHHHHH-HHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHH---HHHHHHHHHH
Q 014893 175 FVVKPILGYIFGTISVSVFGLPTPIGAGIM-LVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT---AVFVTPLLSL 250 (416)
Q Consensus 175 fvi~Plla~~l~~l~~~~~~l~~~la~Gli-L~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istll---a~~~~Pl~l~ 250 (416)
=+++|+.+|.+.+ .+.+++..=+.++. -.+.....+.....+++..-+. +..--|+..-.+. ++++-=++..
T Consensus 64 g~liPl~~~~iLr---~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi-~yeg~m~a~~alME~PAIival~L~~ 139 (327)
T PF05982_consen 64 GILIPLIAFPILR---RLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGI-SYEGYMVALLALMESPAIIVALLLAR 139 (327)
T ss_pred HHHHHHHHHHHHH---HccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCC-CccccHHHHHHHHhhhHHHHHHHHHH
Confidence 3577999998875 44566654444433 3455555555555555555444 4444443322221 1111111112
Q ss_pred HhhCCc-----------------cccChHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHcccCChH--HHHHHH
Q 014893 251 LLIGKR-----------------LPVDVKGMVSSILQ-----IVVVPIAAGLLLNRFFPRICNAIRPFLPPL--SVLVTA 306 (416)
Q Consensus 251 ll~g~~-----------------v~vd~~~i~~~Ll~-----~vllPl~lG~llr~~~p~~~~~i~~~l~~l--s~l~ll 306 (416)
+..+++ -+.+.+++..+.+. .++--+++|++.+ |+-.+.++++...+ ..++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g---~~g~~~i~pf~~~lF~G~L~lF 216 (327)
T PF05982_consen 140 LFSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAG---PEGVESIKPFFVDLFKGVLCLF 216 (327)
T ss_pred HHhccccccccCCccccccccccccccHHHHHHHHHcCchHHHHHHHHHHhheeC---ccchhhccchhhccHHHHHHHH
Confidence 222211 13557777776543 3444455554443 33345566654333 355555
Q ss_pred HHHHHHHHh-hhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014893 307 CCVGAPLAI-NIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEA 354 (416)
Q Consensus 307 liv~~~~~~-n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~ 354 (416)
+.-...++. +-..+ ...++..+...+++++++-.+|..+++. .+.+
T Consensus 217 LLeMGl~A~~rL~~l-~~~g~~li~Fgi~~Pli~a~ig~~lg~~-~gls 263 (327)
T PF05982_consen 217 LLEMGLVAARRLRDL-RKVGWFLIAFGILMPLINALIGIGLGWL-LGLS 263 (327)
T ss_pred HHHhhHHHHHhhHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 553333333 32333 2246667778888999999999888864 3554
No 75
>PRK03818 putative transporter; Validated
Probab=58.87 E-value=68 Score=34.94 Aligned_cols=54 Identities=17% Similarity=0.072 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHH
Q 014893 324 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANR 382 (416)
Q Consensus 324 ~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~ 382 (416)
.++...+..++..++...+++++++++++.+. . .++..-+|.+...-++.-+..
T Consensus 462 ~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~----~-~~~G~~aG~~t~tp~l~~a~~ 515 (552)
T PRK03818 462 EGLSWIGYGFLITAVPLLIVGILARMLAKMNY----L-TLCGMLAGSMTDPPALAFANN 515 (552)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----H-HHHHHHhccCCCcHHHHHHhc
Confidence 35555555566666667778888877777763 3 444444454544444444443
No 76
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=57.30 E-value=59 Score=29.32 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCC
Q 014893 334 TFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ 385 (416)
Q Consensus 334 ~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~ 385 (416)
+..++.-.+.+++++++++.+. . .++..-+|.+...-++.-|...-+
T Consensus 93 ~v~~~~~~~~~~~~~~~~~~~~----~-~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 93 LITVVPTLLVAVALIKLLRINY----A-LTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHHHhCCCH----H-HHHHHHhccccChHHHHHHHHHhc
Confidence 3333444555566666777753 3 445555666665555555544333
No 77
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=56.16 E-value=1.8e+02 Score=27.37 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHH
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTAC 307 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~lll 307 (416)
..+..+.+-++.++..-++.-.+. ...+.++..+...++.+-.+=.+.-+.+|++.|++.+....+++.+..=|.++
T Consensus 41 mGlav~fV~~~s~~~~~~i~~~il--~p~~l~~lr~~~fIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflpLI~tNCaVL 117 (193)
T PRK05151 41 MGLATTFVLTLASICAWLVNTYIL--IPLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVL 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHH
Confidence 445555555555555555544433 22334444444444444444456677899999999999998888765444433
No 78
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=55.77 E-value=1.9e+02 Score=31.57 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHhhc-hhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHH
Q 014893 139 PALGFLMFAVGVNSSEKDFIEAFKR-PAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIML 205 (416)
Q Consensus 139 ~~l~~mmf~~Gl~l~~~~l~~~~~~-p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL 205 (416)
..+.+-+|+.|++.-+.=+....|+ .+..+.+++.-.+ .=+++++++ .++++++..+.|++-
T Consensus 62 ~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~-~~~~~~~~~----~~~g~~~~~~~Gl~a 124 (562)
T TIGR03802 62 VFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVS-GLITVYALA----KIFGLDKGTAAGLAA 124 (562)
T ss_pred HHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHHH----HHhCCCHHHHHHHHh
Confidence 3556666788888877666544443 4555444443222 224455555 578999999999874
No 79
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=54.54 E-value=3.1e+02 Score=29.61 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCC--hHHHHHHHHHhcCCchhhHHH
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQLSNY 217 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~--~~la~GliL~a~~Pg~~~s~v 217 (416)
.+.+.+...|+++|+..+.+ ++..++..++..++..++.++..++ .++.+ ..+..|+.+ ++.+..+-+
T Consensus 281 f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~----~~g~~~~~a~~~gl~l---~~~Gef~li 350 (558)
T PRK10669 281 FAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVR----LFGHSRRTALTIAASL---AQIGEFAFI 350 (558)
T ss_pred HHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HhCCChhhHHHHHHHH---hcccchHHH
Confidence 34455557899999887753 4444444444556666666666653 34433 344455543 344444433
Q ss_pred HHHh--cCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 218 ATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (416)
Q Consensus 218 ~T~l--a~Gn~aaLsl~lt~istlla~~~~Pl~l~l 251 (416)
.... ..|-..+-.-....+.++++.+++|++...
T Consensus 351 i~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 351 LAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 122221122223444556666677766554
No 80
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=53.32 E-value=1.1e+02 Score=28.59 Aligned_cols=133 Identities=19% Similarity=0.322 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhc--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 273 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLA 350 (416)
Q Consensus 273 llPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~--~~~~~i~~~~i~~~l~~f~lG~~l~~~l 350 (416)
+..+++|+++.+..+...+.. ..........+++.++.-++.|.+.+-+ +.+++.....+...+.....|+..+. +
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~-l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL-L 79 (191)
T ss_pred eeeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 345677888877754321111 1122223344455566666666433211 13455554444444555566666554 4
Q ss_pred hccccccchhhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhh
Q 014893 351 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAK 413 (416)
Q Consensus 351 ~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~~alp~~iy~v~q~i~~~~la~~w~~ 413 (416)
++.+ -+.+++.+.|+-=-++.-.+-.... +|+...-+-+..++.=++.-+.+....|
T Consensus 80 l~~~-----~~~~lav~sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 80 LGLS-----LKESLAVASGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred hcCC-----HHHHHHHHccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 3445566666666667666655545 3655444444444433333333333333
No 81
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=50.13 E-value=3.1e+02 Score=31.53 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=22.4
Q ss_pred HHHHHhhcCcc--hhhhhh---hhH-HHHHHHHHHHhcCCCCHHHHH
Q 014893 118 STMLALVFPPS--FTWFTA---RYY-APALGFLMFAVGVNSSEKDFI 158 (416)
Q Consensus 118 ~~~~g~~~P~~--~~~l~~---~~i-~~~l~~mmf~~Gl~l~~~~l~ 158 (416)
+.++|+.+|+. ...+.+ ... ..++.+-+...|+++|+..+.
T Consensus 299 AFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~ 345 (832)
T PLN03159 299 AFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQ 345 (832)
T ss_pred HHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhc
Confidence 34667778852 112211 111 234455555789999997763
No 82
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=49.48 E-value=2.2e+02 Score=26.52 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHH
Q 014893 229 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT 305 (416)
Q Consensus 229 Lsl~lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~l 305 (416)
+.++.+.+.++.+++.-++.=.++.. .+...+...++.+-.+=..+-+.+|++.|++.+.+..+++.+..=++
T Consensus 41 mGlav~~V~~~s~~~~~~l~~~il~p----~~~lr~~~~ilviA~~v~~v~~~l~~~~p~l~~~LgiylpLi~~Nc~ 113 (190)
T PF02508_consen 41 MGLAVTFVLTLSSVLISLLRNFILAP----PSYLRIIVFILVIASLVQLVEMVLRAYFPSLYKALGIYLPLITVNCA 113 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHhhhHHHHHHH
Confidence 34444444444444444443333222 22233333333333334457788899999999988888876654333
No 83
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=48.31 E-value=2e+02 Score=28.98 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=56.7
Q ss_pred HHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCC
Q 014893 145 MFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDP 224 (416)
Q Consensus 145 mf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~G 224 (416)
+++.|.-. |+...+.+||-++.|-..|+.+.--+... ...+..+..+.++-+++.+-|.++-++-+.++ .
T Consensus 91 FmGvGAmT---DFgpllanPktllLGaAAQ~GIF~t~~~A------~~lgf~~~eAasIgIIGGADGPTaIy~t~~LA-P 160 (375)
T COG1883 91 FMGVGAMT---DFGPLLANPKTLLLGAAAQFGIFATVFGA------LALGFTPKEAASIGIIGGADGPTAIYLTNKLA-P 160 (375)
T ss_pred Hhccchhc---ccchhhcCcHHHHhhhHHHhchHHHHHHH------HHhCCCHhhhhheeeeccCCCCceEEeccccC-H
Confidence 33555544 45556799999999999999876332222 24555666666666677665544333333333 3
Q ss_pred CchhhHHHHHHHH-HHHHHHHHHHHHHHhh
Q 014893 225 PLAPLSIVMTSLS-TATAVFVTPLLSLLLI 253 (416)
Q Consensus 225 n~aaLsl~lt~is-tlla~~~~Pl~l~ll~ 253 (416)
|. --+++...-| ..+-|+.=|-.+..+.
T Consensus 161 ~L-l~~iAvAAYSYMALVPiIQPpimkaLT 189 (375)
T COG1883 161 EL-LGAIAVAAYSYMALVPIIQPPIMKALT 189 (375)
T ss_pred HH-HHHHHHHHHHHHHHhhhcccHHHHHhc
Confidence 43 2233333333 3455666677777765
No 84
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=48.04 E-value=98 Score=32.55 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCcc---hhhhhhhhHHHHHHHHHHHhcCC-CCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHH
Q 014893 110 FLPHVVLGSTMLALVFPPS---FTWFTARYYAPALGFLMFAVGVN-SSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 185 (416)
Q Consensus 110 ~l~l~v~~~~~~g~~~P~~---~~~l~~~~i~~~l~~mmf~~Gl~-l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l 185 (416)
|+.+.+++.-..++.-++. ..+..+-...-...-+|+..|+. +|++|+.+++ .|..++..+..-...+ +.++.+
T Consensus 276 ~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~-t~~~vv~~~~~Vl~~~-~~a~~v 353 (414)
T PF03390_consen 276 WMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAF-TPQYVVIVLATVLGAV-IGAFLV 353 (414)
T ss_pred HHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHh-CHHHHHHHHHHHHHHH-HHHHHH
Q ss_pred HhhhhhccCCChHHHHHHHHHhcCCchh
Q 014893 186 GTISVSVFGLPTPIGAGIMLVSCVSGAQ 213 (416)
Q Consensus 186 ~~l~~~~~~l~~~la~GliL~a~~Pg~~ 213 (416)
++++ .+.+.+..+..|+ |.+--|++
T Consensus 354 G~l~-g~YPvEsAItaGL--C~an~GGt 378 (414)
T PF03390_consen 354 GKLV-GFYPVESAITAGL--CMANMGGT 378 (414)
T ss_pred HHHh-CCChHHHHHHhhh--cccCCCCC
No 85
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=47.75 E-value=2.7e+02 Score=26.95 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=58.9
Q ss_pred HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCCCCc-c
Q 014893 311 APLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL-V 389 (416)
Q Consensus 311 ~~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~~p~-~ 389 (416)
...+.|++.+.++ .+.+...+++=..++...+++++| +++.++ +-.+++. .=.-.+.+|+.++...-+.|+ .
T Consensus 77 vPLYkq~~~ik~~-w~~I~~g~~vGs~~ai~s~~llak-~~g~~~---~~~~Sl~--PkSvTTpiAm~vs~~iGGip~lt 149 (230)
T COG1346 77 VPLYKQRHLIKRH-WKPILAGVLVGSVVAIISGVLLAK-LFGLSP---ELILSLL--PKSVTTPIAMEVSESIGGIPALT 149 (230)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH---HHHHHhc--ccccccHHHHHHHHhcCCchHHH
Confidence 3567887766664 334555556667778888999997 557653 2222222 222234666666666665555 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Q 014893 390 SVPPAISTVIMSLMGFFLVMLWAKK 414 (416)
Q Consensus 390 alp~~iy~v~q~i~~~~la~~w~~r 414 (416)
++-+++-.++-+++|..+-+..+-|
T Consensus 150 av~Vi~tGi~Gavlg~~llk~~~i~ 174 (230)
T COG1346 150 AVFVILTGILGAVLGPLLLKLLRIR 174 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4445666777888888777666533
No 86
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=47.09 E-value=3.7e+02 Score=28.35 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHH
Q 014893 111 LPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAI 167 (416)
Q Consensus 111 l~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~l 167 (416)
+|+.++.++..|+.-|.-..... ..+++.+-.|.. -++++||+.+.+++--..
T Consensus 222 ~pviilggI~~Gi~TpTEAaava---~~yal~v~~~iy-r~l~~~~l~~~l~~t~~~ 274 (425)
T PRK15060 222 LPVIIIGGFRSGLFTPTEAGAVA---AFYALFVAVVIY-REMTFSTLYHVLINAAKT 274 (425)
T ss_pred HHHHHHHHHHHhccCHHHHHHHH---HHHHHHHHHHHH-cCcCHHHHHHHHHHHHHH
Confidence 34444445555554443222221 122333323323 378999999888875433
No 87
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=43.74 E-value=3.7e+02 Score=27.45 Aligned_cols=130 Identities=20% Similarity=0.223 Sum_probs=69.4
Q ss_pred HHHHHHHHhhcCcchhhh--hhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhc
Q 014893 115 VLGSTMLALVFPPSFTWF--TARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV 192 (416)
Q Consensus 115 v~~~~~~g~~~P~~~~~l--~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~ 192 (416)
++.++.+|=.-|++.+.- .+...-.-+.++||..|+..+.||+... |. .-+-+.+.|..+.-++++++.++ .-
T Consensus 37 L~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLav-k~--iAipgAl~qia~at~lg~gL~~~--lg 111 (408)
T COG4651 37 LLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAV-KA--IAIPGALAQIALATLLGMGLSSL--LG 111 (408)
T ss_pred HHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhH-HH--HhcchHHHHHHHHHHHHhHHHHH--cC
Confidence 344555555555544321 1111223578899999999999998644 21 12446677888888888888853 22
Q ss_pred cCCChHHHHHHHHHhcCCchhhHHHH-HH-------hcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014893 193 FGLPTPIGAGIMLVSCVSGAQLSNYA-TF-------LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI 253 (416)
Q Consensus 193 ~~l~~~la~GliL~a~~Pg~~~s~v~-T~-------la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~ 253 (416)
++..+.+..|+.+- .+...-.. +. --+|..|--=+.+.=+..+++.+..|.+-..+.
T Consensus 112 ws~~~glvfGlaLS----~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 112 WSFGTGIVFGLALS----VASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred CCcccceeeeehhh----hHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 33444444444321 11111111 11 123333111123344456667778888777653
No 88
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=41.58 E-value=1.6e+02 Score=30.34 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHH
Q 014893 140 ALGFLMFAVGVN-SSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGI 203 (416)
Q Consensus 140 ~l~~mmf~~Gl~-l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~Gl 203 (416)
....+|...|+. .+++|+.+.+. +..+.+.+.. .+-+=+.++.++|++ .+.+.+..+..|+
T Consensus 242 lt~~ll~giGla~t~l~~L~~a~t-~~~vviiv~~-Vlg~ii~s~lvGKll-G~YPiE~aItagL 303 (347)
T TIGR00783 242 LTWPLMVGVGVSYIDLDDLVAALS-WQFVVICLSV-VVAMILGGAFLGKLM-GMYPVESAITAGL 303 (347)
T ss_pred HHHHHHHHcccccCCHHHHHHHhc-hhHhhhHHHH-HHHHHHHHHHHHHHh-CCChHHHHHHHhh
Confidence 556677778887 89999999885 4433333332 233346677778532 3344444455444
No 89
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=38.37 E-value=4.7e+02 Score=27.01 Aligned_cols=129 Identities=17% Similarity=0.247 Sum_probs=68.4
Q ss_pred HHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhh---hccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHH
Q 014893 156 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISV---SVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIV 232 (416)
Q Consensus 156 ~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~---~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~ 232 (416)
++.|-++.-..+..+...-+...|.++..+...+. ...+.||....+.++-.=+-|-..+..++ + |. .....
T Consensus 33 ~FeeG~~amG~l~l~m~GI~~laP~la~~l~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la---~-~~-~~~~f 107 (354)
T PF04346_consen 33 KFEEGIMAMGPLALSMAGIMALAPVLAAFLSPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELA---Q-DP-EAGIF 107 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHc---C-Ch-hhHHH
Confidence 44444444445555556666666776666653221 34567787776666543333332222221 1 22 11111
Q ss_pred H-HHHHHHHH---HHHHHHHHHHhh-------------------------CCccccChHHHHHHHHHHHHHHHHHHHHHH
Q 014893 233 M-TSLSTATA---VFVTPLLSLLLI-------------------------GKRLPVDVKGMVSSILQIVVVPIAAGLLLN 283 (416)
Q Consensus 233 l-t~istlla---~~~~Pl~l~ll~-------------------------g~~v~vd~~~i~~~Ll~~vllPl~lG~llr 283 (416)
. ..+++.++ .|.+|+-+...- |-...+|+..++.+++-++++-+++...++
T Consensus 108 sG~ilgsmlG~TIvFtIPVaLgii~k~D~~y~a~Gil~GiitIPiG~~vggl~~g~~~~~il~Nl~Pvii~~~lla~GL~ 187 (354)
T PF04346_consen 108 SGLILGSMLGATIVFTIPVALGIIEKEDHKYLAKGILAGIITIPIGCFVGGLIAGFDIGMILINLIPVIIFAILLAIGLW 187 (354)
T ss_pred HHHHHHHhhcccEEeehhhhhhhcChhhhHHHHHHHHHHHhhhCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222222 234555554331 111347888888898889999999998888
Q ss_pred HHhHHH
Q 014893 284 RFFPRI 289 (416)
Q Consensus 284 ~~~p~~ 289 (416)
+.-.+.
T Consensus 188 ~~p~~m 193 (354)
T PF04346_consen 188 FFPEKM 193 (354)
T ss_pred HhHHHH
Confidence 774433
No 90
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=37.68 E-value=91 Score=23.95 Aligned_cols=36 Identities=22% Similarity=0.524 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcc
Q 014893 260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRP 295 (416)
Q Consensus 260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~ 295 (416)
+..++++-+.+..++=+-+|.+.|++.|++-+.++.
T Consensus 2 ~i~DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~ 37 (62)
T PF11120_consen 2 NISDIIQIIILCALIFFPLGYLARRWLPRIRRTLRR 37 (62)
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 344555555555555566899999999987665543
No 91
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=36.13 E-value=4.9e+02 Score=26.59 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHH
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY 217 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v 217 (416)
...+..|++.|-+++|++++.+.-+ |.+.+-+.+.+. -++++.++...+.-+-.+.+= ++-++.+.--| .+.|.
T Consensus 63 n~llpamI~lmLlqcd~Rki~Klg~--rll~ifli~sv~--~vlGfIl~yp~~ksf~gd~Wk-a~gmi~gSytG-GSaNm 136 (384)
T COG5505 63 NYLLPAMIPLMLLQCDVRKIFKLGR--RLLFIFLISSVG--TVLGFILAYPLLKSFIGDLWK-AGGMISGSYTG-GSANM 136 (384)
T ss_pred HHHHHHHHHHHHHHccHHHHHhhcc--hhhHHHHHHHHH--HHHHHHHHHHHHhhhcchHHh-hhhheeeeeeC-CcchH
Confidence 3467777777888999998865433 333332232222 244555543211212113333 33333333333 33443
Q ss_pred --HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 218 --ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (416)
Q Consensus 218 --~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l 251 (416)
+.....=+. ++-....+.+|+.=-+..|+.+.+
T Consensus 137 AAmqaaLeVP~-~~fsatlaaDtv~ySll~~lli~i 171 (384)
T COG5505 137 AAMQAALEVPG-EYFSATLAADTVMYSLLFFLLISI 171 (384)
T ss_pred HHHHhhhcCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333 233333444555555555555543
No 92
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=34.33 E-value=4.3e+02 Score=25.45 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhheeeecccccH--HHHHHHHHHhCCCCc-
Q 014893 312 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS--LLALALANRFFQDPL- 388 (416)
Q Consensus 312 ~~~~n~~~i~~~~~~~i~~~~i~~~l~~f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~--~Lal~lA~~~f~~p~- 388 (416)
.++.|.+.+.+++ ..+.....+=.+.+...++++++ +++.++ .... +..-|+. ++|+.++...-++|.
T Consensus 75 PLY~~~~~lk~~~-~~Il~~~~~G~~~~~~s~~~la~-~lg~~~-----~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sL 145 (226)
T TIGR00659 75 PLYKQLPQIKKYW-KEIILNVAVGSVIAIISGTLLAL-LLGLGP-----EIIA--SLLPKSVTTPIAMHVSEMIGGIPAV 145 (226)
T ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHCcCH-----HHHH--HhhhHHhhHHHHHHHHHHhCChHHH
Confidence 4566666555542 23344444445566777777777 445542 2333 3445665 555555666655544
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 014893 389 VSVPPAISTVIMSLMGFFLVMLWA 412 (416)
Q Consensus 389 ~alp~~iy~v~q~i~~~~la~~w~ 412 (416)
.++-+++-+++-.+++..+.++.+
T Consensus 146 ta~~vvitGi~Ga~~g~~ll~~~~ 169 (226)
T TIGR00659 146 TAVFVILTGLLGTVFGPMVLRYFR 169 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333344555666666666555544
No 93
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=32.60 E-value=6.3e+02 Score=27.08 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=23.0
Q ss_pred HhHHHHH-HHHHHhhhhhccCCChHHHHHHHHHhcCCch
Q 014893 175 FVVKPIL-GYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 212 (416)
Q Consensus 175 fvi~Pll-a~~l~~l~~~~~~l~~~la~GliL~a~~Pg~ 212 (416)
|-++|++ +|-.+ .-++.+|-++..+-.+-+.|.-
T Consensus 158 FyFLPi~v~~saa----k~f~~np~lg~~ig~~L~~P~~ 192 (472)
T PRK09796 158 FFFLPLMVAASAA----IKFKTNMSLAIAIAGVLVHPSF 192 (472)
T ss_pred HHHHHHHHHHHHH----HHhCCChHHHHHHHHHHHCcch
Confidence 5566765 66666 5678888877666666666743
No 94
>COG2431 Predicted membrane protein [Function unknown]
Probab=32.51 E-value=5.2e+02 Score=25.86 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCC---HHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHh
Q 014893 111 LPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSS---EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGT 187 (416)
Q Consensus 111 l~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~---~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~ 187 (416)
+...++.+..+|+..-.....-. ....+.+.++.|..|.++. ... ++..-+.+.+.... -+++..+++-.++.
T Consensus 109 ~~~~vl~g~~~G~l~~~~~~~~~-~a~~~~L~~LlF~iGi~l~n~g~~~-~~~~Lnk~gl~l~~--i~ilssliGG~iaa 184 (297)
T COG2431 109 LLGVVLLGLALGLLTGSFLNFPE-NASEYLLYLLLFLIGIQLGNSGISL-RQVLLNKRGLILAF--ITLLSSLIGGLIAA 184 (297)
T ss_pred HHHHHHHHHHHHHHhcccccCch-hHHHHHHHHHHHHHHHHhccccchh-hhHHhccchHHHHH--HHHHHHHHHHHHHH
Confidence 46778888899998877765532 4456778888888888777 322 23333344443322 23444444444442
Q ss_pred hhhhccCCChHHHHHHHHHhcCCchhhHH---HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 188 ISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL 252 (416)
Q Consensus 188 l~~~~~~l~~~la~GliL~a~~Pg~~~s~---v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll 252 (416)
.+.++|-. .|+.+-+ --|-+|- ..|.-.+.-.-..+...-..==+++.++.|++..-+
T Consensus 185 ---~~l~lpl~--~~lAmas--G~GWYSlsG~ll~~a~~pv~Gsiafl~nl~RE~lai~liP~L~r~~ 245 (297)
T COG2431 185 ---FLLDLPLT--TGLAMAS--GFGWYSLSGILLTEAYGPVLGSIAFLNNLLRELLAIVLIPLLARRF 245 (297)
T ss_pred ---HHHhccHH--HHHHHHh--ccchhhhhhHHHhcccCcchhhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22333222 2222111 1122221 222211111112333333444578899999998876
No 95
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=32.18 E-value=5.6e+02 Score=26.12 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=62.5
Q ss_pred hhchHHHHHHHhhhH-HHHHHHHHHHHHhhcCcchh-hhhhhhH----HHHHHHHHHHhcCCCCHHHHHHHhhc-hhHHH
Q 014893 96 QEFSLVNILKQSNSF-LPHVVLGSTMLALVFPPSFT-WFTARYY----APALGFLMFAVGVNSSEKDFIEAFKR-PAAIF 168 (416)
Q Consensus 96 ~~~~~~~~l~~l~~~-l~l~v~~~~~~g~~~P~~~~-~l~~~~i----~~~l~~mmf~~Gl~l~~~~l~~~~~~-p~~ll 168 (416)
++.++.+.++..-.+ -.+.++.+.++|++..+-+. ..+ +.. .-.+.+-++-||+.- -+++++..|. ++.+.
T Consensus 163 ~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~-pf~~~lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~ 240 (327)
T PF05982_consen 163 EGISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIK-PFFVDLFKGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIA 240 (327)
T ss_pred ccccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhcc-chhhccHHHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHH
Confidence 445666666664322 25666778899999866543 222 332 225666666777632 2333332222 23222
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHH--hcCCCchhhHH
Q 014893 169 AGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF--LTDPPLAPLSI 231 (416)
Q Consensus 169 ~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~--la~Gn~aaLsl 231 (416)
-=+++|++.-.++...-...++++.=+.=+..++++..-.+++.--+ +=+.|. .+.+
T Consensus 241 -----Fgi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnp-slyl 299 (327)
T PF05982_consen 241 -----FGILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANP-SLYL 299 (327)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCc-hHHH
Confidence 23567877554443222455665544333333443333334443333 334454 3433
No 96
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=31.54 E-value=4.1e+02 Score=24.28 Aligned_cols=83 Identities=25% Similarity=0.421 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhc-------CcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhch--hHHHHHHHHHHhHHHHHHHH
Q 014893 114 VVLGSTMLALVF-------PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRP--AAIFAGYVGQFVVKPILGYI 184 (416)
Q Consensus 114 ~v~~~~~~g~~~-------P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p--~~ll~~l~~~fvi~Plla~~ 184 (416)
.++++.++|.+- |....+.. -...+.+-++..|++.-. ++.+.+|+. +..+.+++.. ++..++++.
T Consensus 29 ~L~vgL~~G~~~~~~~~~~~~~~~~~l---~~~GL~lFl~~VGl~aG~-~F~~~l~~~G~~~~~~~~~i~-~~~~~~~~~ 103 (169)
T PF06826_consen 29 VLFVGLILGALGRTGPIFLPISAPSFL---RQLGLALFLAAVGLSAGP-GFFSSLKRGGLKLLLLGVIIT-LVPLLIALV 103 (169)
T ss_pred HHHHHHHHHHhhhccCCCCCccHHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHH-HHHHHHHHH
Confidence 345666777773 33222111 123444555566666555 455566654 3344444332 333455677
Q ss_pred HHhhhhhccCCChHHHHHHH
Q 014893 185 FGTISVSVFGLPTPIGAGIM 204 (416)
Q Consensus 185 l~~l~~~~~~l~~~la~Gli 204 (416)
+++ ..+++|+....|.+
T Consensus 104 ~~~---~~~~l~~~~~~G~~ 120 (169)
T PF06826_consen 104 IGR---YLFKLNPGIAAGIL 120 (169)
T ss_pred HHH---HHcCCCHHHHHHHH
Confidence 774 37899999988886
No 97
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=31.54 E-value=1.3e+02 Score=31.31 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=86.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCcc---h---hhhh--hhhHH----HHHHHHHHHhcCCCCHHHHHHHhhchhHHH
Q 014893 101 VNILKQSNSFLPHVVLGSTMLALVFPPS---F---TWFT--ARYYA----PALGFLMFAVGVNSSEKDFIEAFKRPAAIF 168 (416)
Q Consensus 101 ~~~l~~l~~~l~l~v~~~~~~g~~~P~~---~---~~l~--~~~i~----~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll 168 (416)
+..++.+-+--....+++.++|..-|-- + +.+. +.-+. .++..|+...|-++- ++.++.-.|.+.++
T Consensus 239 ~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~-~g~~ss~~~~~~ii 317 (408)
T KOG2722|consen 239 KVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLI-QGLRSSALKTSVII 317 (408)
T ss_pred HhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccc-cCchhcccCceEEE
Confidence 3445554444456666677776554321 1 1111 11111 245566666665553 33344445666666
Q ss_pred HHHHHHHhHHHHHHHHHHhhhhhcc--C-CChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 014893 169 AGYVGQFVVKPILGYIFGTISVSVF--G-LPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 245 (416)
Q Consensus 169 ~~l~~~fvi~Plla~~l~~l~~~~~--~-l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~ 245 (416)
-.++..++++|+.+.++.+....+. . .||-+..-+++.-.+|++.-..-+|.+-|--. .-+......+-.++.+-+
T Consensus 318 giii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e-~Ecs~il~W~y~va~l~l 396 (408)
T KOG2722|consen 318 GIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAE-RECSVILFWTYAVASLSL 396 (408)
T ss_pred EEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhH-HHHHHHHHHHHHHHHhhH
Confidence 6677799999999988875433322 2 45667788888999999988877888777554 445555555555555544
Q ss_pred HHHHH
Q 014893 246 PLLSL 250 (416)
Q Consensus 246 Pl~l~ 250 (416)
-+|..
T Consensus 397 tvw~~ 401 (408)
T KOG2722|consen 397 TVWSV 401 (408)
T ss_pred HHHHH
Confidence 44443
No 98
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=30.48 E-value=5.4e+02 Score=25.42 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHHHHhHH--HHHHHHHHhhhhhccCCChHHHHHHHHHhcCC--------------chhhHHHHHHhcCCCchhhHHH
Q 014893 169 AGYVGQFVVK--PILGYIFGTISVSVFGLPTPIGAGIMLVSCVS--------------GAQLSNYATFLTDPPLAPLSIV 232 (416)
Q Consensus 169 ~~l~~~fvi~--Plla~~l~~l~~~~~~l~~~la~GliL~a~~P--------------g~~~s~v~T~la~Gn~aaLsl~ 232 (416)
.|+..-+... |...|.+-. .+.++|.|+-.+-.+-||.+ +-.+..+++.+..=|. .--.
T Consensus 144 ~glil~~~~~~~pf~ifl~~~---ff~~iP~eleEAA~iDGas~~~if~kIvlPl~~P~laa~~I~~fi~~WN~--fl~p 218 (281)
T COG0395 144 WGLILPYLAFGLPFAIFLLRQ---FFRTIPKELEEAARIDGASEFQIFFKIVLPLAKPGLAAVAIFTFIGAWNE--FLWP 218 (281)
T ss_pred HHHHHHHHHHHhHHHHHHHHH---HHHhCCHHHHHHHHHcCCChhHHHHHHHHHcchHHHHHHHHHHHHHHHHH--HHHH
Confidence 3444444444 777777653 24568888887777788775 3334444444444332 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014893 233 MTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF 286 (416)
Q Consensus 233 lt~istlla~~~~Pl~l~ll~g~~v~vd~~~i~~~Ll~~vllPl~lG~llr~~~ 286 (416)
++.+++ -...++|+.+..+.|++...|...++....+..+=++++-.+.||++
T Consensus 219 li~~~~-~~~~tl~v~l~~~~~~~~~~~w~~~~A~~vi~~lP~li~f~~~Qr~~ 271 (281)
T COG0395 219 LILLSS-PNLLTLPVGLNSFGGSEGGTDWGLIMAAAVLAILPVLIVFLFFQRYF 271 (281)
T ss_pred HHHhCC-CccccHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 44456677777666655667777666655444444445666666654
No 99
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=29.69 E-value=1.9e+02 Score=25.39 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=40.6
Q ss_pred HHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhc-----hhHHHHHHHHHHhHHHHHHHHHHh
Q 014893 117 GSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKR-----PAAIFAGYVGQFVVKPILGYIFGT 187 (416)
Q Consensus 117 ~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~-----p~~ll~~l~~~fvi~Plla~~l~~ 187 (416)
++++.|-.+......+.+..+.|.+.. ...| .+++++.-.++. -...++..+.||++.-+..|.+.+
T Consensus 21 VgVIIGaAFg~IV~SlV~diImPlIg~--~~gg--~dfs~l~~~l~~~~~~i~yG~Fi~~vinFlIiAf~iFl~Vk 92 (130)
T COG1970 21 VGVIIGAAFGKIVTSLVNDIIMPLIGL--LVGG--LDFSNLFITLGIPAVVIAYGAFIQAVINFLIIAFAIFLVVK 92 (130)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhh--hcCC--cChhhheeecCCCceeeeHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444556677762 2233 778877655552 234667778899988777777664
No 100
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=29.44 E-value=6.5e+02 Score=26.01 Aligned_cols=101 Identities=14% Similarity=0.231 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCcchhhhh--hhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 014893 114 VVLGSTMLALVFPPSFTWFT--ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS 191 (416)
Q Consensus 114 ~v~~~~~~g~~~P~~~~~l~--~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~ 191 (416)
.++....+...+|+..+.+. ++.-...+-+.+-.+|.+.|++++.+ .|..++.+.+. ..+==++.+++++
T Consensus 244 l~~tt~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~i~-l~iH~~l~l~~~k---- 315 (378)
T PF05684_consen 244 LTVTTLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLFGFII-LAIHLLLMLILGK---- 315 (378)
T ss_pred HHHHHHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHHHHHH-HHHHHHHHHHHHH----
Confidence 33344455666777665532 11222233333447899998888765 66665554443 2222244566774
Q ss_pred ccCCChHHHHHHHHHhcCCchhhHHHHHHhcC
Q 014893 192 VFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD 223 (416)
Q Consensus 192 ~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~ 223 (416)
++++|-+.. .+.-.++.-|.+.+++++.-.+
T Consensus 316 l~k~~l~~~-~vAS~AnIGGpaTA~a~A~a~~ 346 (378)
T PF05684_consen 316 LFKIDLFEL-LVASNANIGGPATAPAVAAAKG 346 (378)
T ss_pred HHCCCHHHH-HHHhhcccCCcchHHHHHHhcC
Confidence 566666442 4444556655555666666555
No 101
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=28.18 E-value=5.1e+02 Score=26.09 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH
Q 014893 170 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN 216 (416)
Q Consensus 170 ~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~ 216 (416)
.++..+++.-.++|.+++ .++++.+-...+.+.+..--...+.
T Consensus 251 ~v~l~~~~~~~lg~~~~r----~~~l~~~~~~a~~~e~g~qN~~lai 293 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAK----KLGLPYSITAPAAFTGASNNFELAI 293 (328)
T ss_pred HHHHHHHHHHHHHHHHHH----HhCcChhhhhhheehhhhhhHHHHH
Confidence 445666777788888884 6778887777777666555444443
No 102
>PRK03818 putative transporter; Validated
Probab=27.38 E-value=8.3e+02 Score=26.58 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhc--hhHHHHHHHHHHhHHHHH-HHHHHhhhhhccCCChHHHHHHH
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKR--PAAIFAGYVGQFVVKPIL-GYIFGTISVSVFGLPTPIGAGIM 204 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~--p~~ll~~l~~~fvi~Pll-a~~l~~l~~~~~~l~~~la~Gli 204 (416)
.+.+-+|..|++.-..=+ +.+|+ .+..+.+++. .+.|++ ++.+. ..+++++..+.|++
T Consensus 66 gl~lFv~~vGl~~Gp~f~-~~l~~~G~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~G~~ 126 (552)
T PRK03818 66 GLILFVYTIGIQVGPGFF-SSLRKSGLRLNLFAVLI--VILGGLVTAILH----KLFGIPLPVMLGIF 126 (552)
T ss_pred HHHHHHHHHhhcccHHHH-HHHHHhhHHHHHHHHHH--HHHHHHHHHHHH----HHhCCCHHHHHHHh
Confidence 344455566666665544 45555 3444444333 333333 44443 57899999888876
No 103
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=25.34 E-value=7.7e+02 Score=25.49 Aligned_cols=107 Identities=11% Similarity=0.051 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHhhchhH-HHHHHHHHHhHHHHHHHHHHhhhhhccCCChH-HHHHHHHHhcCCchhhH
Q 014893 138 APALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIFGTISVSVFGLPTP-IGAGIMLVSCVSGAQLS 215 (416)
Q Consensus 138 ~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~-ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~-la~GliL~a~~Pg~~~s 215 (416)
.+.+..+++.+-++.|.|++.+.-++.-. .+.+.+...+-.+ ++|.+. ... +.+| ....-++++.-=||..-
T Consensus 58 ~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~-va~~l~----~~~-l~~~~wk~ag~l~gsyiGGs~N 131 (378)
T PF05684_consen 58 TYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAV-VAFLLF----GGF-LGPEGWKIAGMLAGSYIGGSVN 131 (378)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHH----hhc-ccchHHHHHHHHHhcccCchhH
Confidence 34555555555678888888655433222 1222222223222 233332 111 2344 33444445554455433
Q ss_pred H-HHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014893 216 N-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL 251 (416)
Q Consensus 216 ~-v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~l 251 (416)
. .+..-.+-+. ++-......+++..-+.+.+++.+
T Consensus 132 ~~Av~~al~~~~-~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 132 FVAVAEALGVSD-SLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3677777777 788888889999998888887765
No 104
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=24.20 E-value=1e+03 Score=26.51 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=20.9
Q ss_pred HhHHHHH-HHHHHhhhhhccCCChHHHHHHHHHhcCCc
Q 014893 175 FVVKPIL-GYIFGTISVSVFGLPTPIGAGIMLVSCVSG 211 (416)
Q Consensus 175 fvi~Pll-a~~l~~l~~~~~~l~~~la~GliL~a~~Pg 211 (416)
|-++|++ +|-.+ .-++-+|-++..+-.+-+.|.
T Consensus 154 FyFLPi~ia~saA----kkf~~np~lg~~ig~~L~~P~ 187 (627)
T PRK09824 154 FFFFPIILGYTAG----KKFGGNPFTAMVIGGALVHPL 187 (627)
T ss_pred HHHHHHHHHHHHH----HHhCCChHHHHHHHHHHHChh
Confidence 4556665 67766 567888866655555555673
No 105
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=21.97 E-value=6.8e+02 Score=28.81 Aligned_cols=80 Identities=13% Similarity=-0.007 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCCHHHHHH-H--hhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHH
Q 014893 140 ALGFLMFAVGVNSSEKDFIE-A--FKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN 216 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~-~--~~~p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~ 216 (416)
+-.++++..|+.+...++.. . ...++.++++++..|+..|..++.+.. +.+.......-+++--.-|=|..|.
T Consensus 300 Ln~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~----li~~~~s~rErlFigWFGpRGIGSI 375 (810)
T TIGR00844 300 LNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKP----LIPDIKSWREAMFIGHFGPIGVGAV 375 (810)
T ss_pred HHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccCCCHHHHHHheeeccccHHHH
Confidence 33455667888888877642 1 233677888888899999888876531 2221122334444444557777776
Q ss_pred HHHHhcC
Q 014893 217 YATFLTD 223 (416)
Q Consensus 217 v~T~la~ 223 (416)
++..++.
T Consensus 376 yyl~~A~ 382 (810)
T TIGR00844 376 FAAILSK 382 (810)
T ss_pred HHHHHHH
Confidence 6555543
No 106
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.34 E-value=2.1e+02 Score=30.73 Aligned_cols=100 Identities=20% Similarity=0.260 Sum_probs=61.3
Q ss_pred ccCCChHHHHHHHHHhcC---CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHH---HHHHHHHHhhCCc---cccChH
Q 014893 192 VFGLPTPIGAGIMLVSCV---SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVF---VTPLLSLLLIGKR---LPVDVK 262 (416)
Q Consensus 192 ~~~l~~~la~GliL~a~~---Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~---~~Pl~l~ll~g~~---v~vd~~ 262 (416)
-+++|+++. |+-++++- |--..|.+.++..=||+ +. +..+=|++.-+. =+|.+++.+.... +.++-.
T Consensus 453 T~gIp~eIM-GLTiLAAGTSIPDlitSvIVARKGlGDM-AV--SsSiGSNiFDI~VGLplPWLL~~lI~~~~~~i~vsS~ 528 (588)
T KOG1307|consen 453 TLGIPDEIM-GLTILAAGTSIPDLITSVIVARKGLGDM-AV--SSSIGSNIFDILVGLPLPWLLYTLIYGFKSKISVSSN 528 (588)
T ss_pred ccCCCHHHh-hhhhhhcCCchHHhhHhhhhcccccccc-ee--ecccccchhheeecCCcHHHHHHHHhhcCCceeecCC
Confidence 367888875 88777643 33335667888888988 33 344445554443 4788888765432 455543
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHH
Q 014893 263 GMVSS--ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS 301 (416)
Q Consensus 263 ~i~~~--Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls 301 (416)
+++-+ ++++.++=++.|+.+++| |..|.+....
T Consensus 529 GL~csi~lLf~ml~v~v~~ia~~rW------rMnK~lG~~m 563 (588)
T KOG1307|consen 529 GLVCSIGLLFAMLIVLVLGIALSRW------RMNKILGFLM 563 (588)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHhh------hcccchhHHH
Confidence 44433 344556667788888888 5666654433
No 107
>PRK04972 putative transporter; Provisional
Probab=21.31 E-value=1.1e+03 Score=25.75 Aligned_cols=59 Identities=24% Similarity=0.439 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHhhc--hhHHHHHHHHHHhHHH-HHHHHHHhhhhhccCCChHHHHHHHH
Q 014893 140 ALGFLMFAVGVNSSEKDFIEAFKR--PAAIFAGYVGQFVVKP-ILGYIFGTISVSVFGLPTPIGAGIML 205 (416)
Q Consensus 140 ~l~~mmf~~Gl~l~~~~l~~~~~~--p~~ll~~l~~~fvi~P-lla~~l~~l~~~~~~l~~~la~GliL 205 (416)
.+.+-+|+.|++.-..=+ +.+|+ .+..+.+++. .+.| ++++.++ ..+++++..+.|++-
T Consensus 65 gl~lF~~~vG~~~Gp~F~-~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~G~~a 126 (558)
T PRK04972 65 GFMLFIFCVGVEAGPNFF-SIFFRDGKNYLMLALVM--VGSALVIALGLG----KLFGWDIGLTAGMLA 126 (558)
T ss_pred HHHHHHHHHhhhhhHHHH-HHHHHhhHHHHHHHHHH--HHHHHHHHHHHH----HHhCCCHHHHHHHhh
Confidence 444555566666655544 45555 3434443333 2333 4455555 568999999988863
No 108
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=21.04 E-value=7.9e+02 Score=24.05 Aligned_cols=62 Identities=5% Similarity=0.008 Sum_probs=34.9
Q ss_pred hccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 014893 191 SVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA----PLSIVMTSLSTATAVFVTPLLSLLLIG 254 (416)
Q Consensus 191 ~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~a----aLsl~lt~istlla~~~~Pl~l~ll~g 254 (416)
...+-|.+++.++..++..=+....+.+..+..|+.. ....... ... +..++.|+.+-....
T Consensus 89 ~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i-~~~-~~~v~vPl~lG~~~r 154 (286)
T TIGR00841 89 YLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGI-GLS-LVAVLIPVSIGMLVK 154 (286)
T ss_pred HHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHH-HHH-HHHHHHHHHHHHHHH
Confidence 4567788888888877765555555554444332210 1222222 333 677788887776543
No 109
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.60 E-value=1.7e+02 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 014893 330 LLIITFHLSAFVAGYVVTGLAF 351 (416)
Q Consensus 330 ~~~i~~~l~~f~lG~~l~~~l~ 351 (416)
+..++..+.|+..||+++|+.+
T Consensus 8 l~ivl~ll~G~~~G~fiark~~ 29 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQM 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455668889999998753
No 110
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=20.51 E-value=6.2e+02 Score=22.62 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=48.2
Q ss_pred HhhhHHHHHHHHHHHHHhhcCc---c-hhhhhhhhHHHHHHHHHH-----HhcCCCCHHHHHHHhhchhHHHHHHHHHHh
Q 014893 106 QSNSFLPHVVLGSTMLALVFPP---S-FTWFTARYYAPALGFLMF-----AVGVNSSEKDFIEAFKRPAAIFAGYVGQFV 176 (416)
Q Consensus 106 ~l~~~l~l~v~~~~~~g~~~P~---~-~~~l~~~~i~~~l~~mmf-----~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fv 176 (416)
.+.|+-.+.+..++++.+-+=+ . +.++++.-+.+-+.+++. ..-=+++.+|+.+.+++|+.+.. +.+-..
T Consensus 11 ~~~kn~~i~iAa~vLL~lk~~~l~~~~~p~le~~Gl~~GiiiLtiaiLvPiAtGki~~~~l~~~f~s~~g~~A-i~~Gil 89 (140)
T PF04284_consen 11 ILGKNNSIAIAACVLLILKLLPLDQYIFPFLEKKGLNWGIIILTIAILVPIATGKIGFKDLLNSFKSWKGIIA-ILAGIL 89 (140)
T ss_pred HHhccHHHHHHHHHHHHHHHhcchhhhhHHHHHhChhHhHHHHHHHHHccccCCCcCHHHHHHHHhCHHHHHH-HHHHHH
Confidence 3444545555555554433322 2 334443333332222222 23447899999999999997643 222222
Q ss_pred HHHHHHHHHHhhhhhccCCChHHHHHHHH
Q 014893 177 VKPILGYIFGTISVSVFGLPTPIGAGIML 205 (416)
Q Consensus 177 i~Plla~~l~~l~~~~~~l~~~la~GliL 205 (416)
+.=+-+-++. +.+.+|++-.|+++
T Consensus 90 va~l~g~Gv~-----Ll~~~P~v~~gLvi 113 (140)
T PF04284_consen 90 VAWLGGRGVN-----LLKVQPQVIVGLVI 113 (140)
T ss_pred HHHHhccChH-----HHccCChhhHHHHH
Confidence 2223333332 45667777767654
Done!