Query 014893
Match_columns 416
No_of_seqs 174 out of 1531
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 03:00:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 8.6E-51 2.9E-55 406.1 32.7 305 100-415 9-314 (332)
2 2kv5_A FST, putative uncharact 20.8 33 0.0011 22.0 1.0 18 268-285 4-21 (33)
3 3zux_A Transporter, ASBTNM; tr 14.9 7.4E+02 0.025 23.4 15.7 38 164-205 227-264 (332)
4 2ks1_B Epidermal growth factor 10.7 3.7E+02 0.013 18.1 4.2 14 402-415 26-39 (44)
5 2oar_A Large-conductance mecha 9.0 2.9E+02 0.0098 24.3 4.0 79 101-184 22-111 (174)
6 2jwa_A Receptor tyrosine-prote 6.6 5.3E+02 0.018 17.4 3.5 17 399-415 23-39 (44)
7 3gz2_P Invasin IPAB, 62 kDa an 5.8 3.3E+02 0.011 19.8 2.3 46 3-56 28-77 (78)
8 2l2t_A Receptor tyrosine-prote 5.4 5.1E+02 0.018 17.5 2.9 8 408-415 31-38 (44)
9 2h4o_A YONK protein; PSI, prot 5.0 2.3E+02 0.0078 20.6 0.9 21 8-28 35-55 (76)
10 1zcd_A Na(+)/H(+) antiporter 1 4.9 1.1E+03 0.037 23.1 6.2 49 136-184 62-113 (388)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=8.6e-51 Score=406.07 Aligned_cols=305 Identities=30% Similarity=0.504 Sum_probs=284.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhhchhHHHHHHHHHHhHHH
Q 014893 100 LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 179 (416)
Q Consensus 100 ~~~~l~~l~~~l~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~~p~~ll~~l~~~fvi~P 179 (416)
+++..++++|++++++++++++|+++|+.+.+++ .+++++++++||.+|++++.+|+++.++|||.+..++++||+++|
T Consensus 9 l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~-~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P 87 (332)
T 3zux_A 9 LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAG-PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP 87 (332)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGG-GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999999886 788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCChHHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Q 014893 180 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPV 259 (416)
Q Consensus 180 lla~~l~~l~~~~~~l~~~la~GliL~a~~Pg~~~s~v~T~la~Gn~aaLsl~lt~istlla~~~~Pl~l~ll~g~~v~v 259 (416)
+++|++++ .++++++++.|+++++||||+.+|++||+++|||. ++++.++.++|+++++++|+++.++.|+.+++
T Consensus 88 ll~~~l~~----~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v 162 (332)
T 3zux_A 88 ATAWCLSK----LLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEI 162 (332)
T ss_dssp HHHHHHHH----HTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHH----HhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 99999984 57999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcccCChHHHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHH
Q 014893 260 DVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA 339 (416)
Q Consensus 260 d~~~i~~~Ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ls~l~llliv~~~~~~n~~~i~~~~~~~i~~~~i~~~l~~ 339 (416)
|+.+++.+++.++++|+++|+++|++.|++.+++++.++.++.++++++++..++.+++.+.+. .+.+....++++.++
T Consensus 163 ~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~ 241 (332)
T 3zux_A 163 QAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIG 241 (332)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998888888887766653 456677788999999
Q ss_pred HHHHHHHHHHhhccccccchhhhheeeecccccHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 014893 340 FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWAKKS 415 (416)
Q Consensus 340 f~lG~~l~~~l~~~~~~~~~~~~tl~~~tg~rN~~Lal~lA~~~f~-~p~~alp~~iy~v~q~i~~~~la~~w~~r~ 415 (416)
|.+||+++|. ++.++ +|++|+++|+|+||+++|+++|..+|+ +|++++|+++|+++|++.++.++.+|+||+
T Consensus 242 ~~lg~~~~r~-~~~~~---~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~ 314 (332)
T 3zux_A 242 YLLGFFAAKW-TGLPY---DAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA 314 (332)
T ss_dssp HHHHHHHHHH-TTCCH---HHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-hCCCH---hHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999984 57765 899999999999999999999999996 689999999999999999999999999886
No 2
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=20.80 E-value=33 Score=22.00 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014893 268 ILQIVVVPIAAGLLLNRF 285 (416)
Q Consensus 268 Ll~~vllPl~lG~llr~~ 285 (416)
++..++.|++.|+.++.+
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788999999998765
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=14.85 E-value=7.4e+02 Score=23.37 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChHHHHHHHH
Q 014893 164 PAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIML 205 (416)
Q Consensus 164 p~~ll~~l~~~fvi~Plla~~l~~l~~~~~~l~~~la~GliL 205 (416)
+..++...+..+.+.-.++|.++ ..++.+.+-...+.+
T Consensus 227 ~~~v~~~~~l~~~~~~~lg~~~~----r~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 227 GLLIFAVVVLHNGIGYLLGFFAA----KWTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHhHhhhhhh
Confidence 33344444444455555666666 456777776666655
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.72 E-value=3.7e+02 Score=18.11 Aligned_cols=14 Identities=0% Similarity=0.206 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhhcc
Q 014893 402 LMGFFLVMLWAKKS 415 (416)
Q Consensus 402 i~~~~la~~w~~r~ 415 (416)
++.....-+||||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 33334344666664
No 5
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=9.05 E-value=2.9e+02 Score=24.33 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=42.2
Q ss_pred HHHHHHhhhHH----HHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHHHHhcCCCCHHHHHHHhh-------chhHHHH
Q 014893 101 VNILKQSNSFL----PHVVLGSTMLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFK-------RPAAIFA 169 (416)
Q Consensus 101 ~~~l~~l~~~l----~l~v~~~~~~g~~~P~~~~~l~~~~i~~~l~~mmf~~Gl~l~~~~l~~~~~-------~p~~ll~ 169 (416)
+++++-+++|. -+=+.+++++|-.+-.....+.+..+.|.+. + + . +.+++++.-.++ =....++
T Consensus 22 ~~mlkeFKeFi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIg-l-~-G--g~dfs~l~~~l~~~~~~~~i~yG~Fi 96 (174)
T 2oar_A 22 KHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLIN-R-I-G--VNAQSDVGILRIGIGGGQTIDLNVLL 96 (174)
T ss_dssp --CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-H-C--CCCEEECCCCTTTCCSCEEECHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-h-h-C--CCCcccceEEEecCCCceeeeHHHHH
Confidence 34444444441 2334455566666655555554566777777 2 2 2 345554321221 1235677
Q ss_pred HHHHHHhHHHHHHHH
Q 014893 170 GYVGQFVVKPILGYI 184 (416)
Q Consensus 170 ~l~~~fvi~Plla~~ 184 (416)
..+++|+++-+..|.
T Consensus 97 ~avInFlIIA~vIYF 111 (174)
T 2oar_A 97 SAAINFFLIAFAVYF 111 (174)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 778899988887733
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.57 E-value=5.3e+02 Score=17.43 Aligned_cols=17 Identities=12% Similarity=0.460 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhcc
Q 014893 399 IMSLMGFFLVMLWAKKS 415 (416)
Q Consensus 399 ~q~i~~~~la~~w~~r~ 415 (416)
.-.+.+..+.-|+|||+
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 33444545555666664
No 7
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR, chaperone, chaperone binding virulence, secreted, transmembrane; 2.65A {Shigella flexneri}
Probab=5.83 E-value=3.3e+02 Score=19.75 Aligned_cols=46 Identities=33% Similarity=0.390 Sum_probs=27.1
Q ss_pred cchhhHHHHhhhcccceeeEEeec----ccccccCCCCCcccccCccccccccccCCc
Q 014893 3 LNANMLQAQRSRFNSKTFSLTISK----HNIPVLPRNRSLSFSTSWCPVHFRSISHSN 56 (416)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (416)
|..|-.||....-| |-|||||.. |+|.. .|. - +....+.|..++|.
T Consensus 28 lgdntiqaandaan-klfsltiadltanqnint--tna---h--stsnilipelkapk 77 (78)
T 3gz2_P 28 LGDNTIQAANDAAN-KLFSLTIADLTANQNINT--TNA---H--STSNILIPELKAPK 77 (78)
T ss_pred cCccHHHHHHHHhh-hhheeehhhhcccccccc--ccc---c--cccceecccccCCC
Confidence 45677888766544 889999864 22221 111 1 22346678777773
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.41 E-value=5.1e+02 Score=17.46 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=4.4
Q ss_pred HHHHhhcc
Q 014893 408 VMLWAKKS 415 (416)
Q Consensus 408 a~~w~~r~ 415 (416)
.-+||||+
T Consensus 31 ~~~~RRRr 38 (44)
T 2l2t_A 31 AVYVRRKS 38 (44)
T ss_dssp HHHHHTTC
T ss_pred HHHhhhhh
Confidence 34566664
No 9
>2h4o_A YONK protein; PSI, protein structure initiative, northeast structural GENO consortium, NESG, structural genomi unknown function; 2.80A {Bacillus subtilis} SCOP: d.368.1.1
Probab=4.97 E-value=2.3e+02 Score=20.65 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=16.6
Q ss_pred HHHHhhhcccceeeEEeeccc
Q 014893 8 LQAQRSRFNSKTFSLTISKHN 28 (416)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (416)
+...-+.||.|..|+||...|
T Consensus 35 ~~e~l~efngknvsitikeen 55 (76)
T 2h4o_A 35 FKEILSEFNGKNVSITVKEEN 55 (76)
T ss_dssp HHHHHHTTTTSCCCCCCCCCC
T ss_pred HHHHHHHhcCceeEEEeeccc
Confidence 345568899999999997765
No 10
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=4.90 E-value=1.1e+03 Score=23.14 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=28.8
Q ss_pred hHHH-HHHHHHHHhcCCCCHHHHHHHhhchhH--HHHHHHHHHhHHHHHHHH
Q 014893 136 YYAP-ALGFLMFAVGVNSSEKDFIEAFKRPAA--IFAGYVGQFVVKPILGYI 184 (416)
Q Consensus 136 ~i~~-~l~~mmf~~Gl~l~~~~l~~~~~~p~~--ll~~l~~~fvi~Plla~~ 184 (416)
|+.- .+.+.||..|++++.|.+...++++|. .-.....-=++.|.+.|.
T Consensus 62 windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~ 113 (388)
T 1zcd_A 62 WINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL 113 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG
T ss_pred HHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4543 678889999999998876433344332 111122223566887764
Done!