Query 014894
Match_columns 416
No_of_seqs 155 out of 192
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2656 DNA methyltransferase 100.0 2E-104 4E-109 790.1 27.4 373 1-390 4-396 (445)
2 PF05499 DMAP1: DNA methyltran 100.0 1.1E-36 2.3E-41 279.4 9.9 160 222-393 1-172 (176)
3 cd00167 SANT 'SWI3, ADA2, N-Co 97.6 3.8E-05 8.3E-10 53.5 2.1 43 129-172 1-44 (45)
4 smart00717 SANT SANT SWI3, AD 97.3 0.00012 2.6E-09 51.6 2.2 45 128-173 2-47 (49)
5 PF00249 Myb_DNA-binding: Myb- 97.3 7.2E-05 1.6E-09 54.9 1.0 44 129-172 3-47 (48)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.0 0.00029 6.2E-09 53.6 1.0 41 130-171 1-41 (60)
7 PLN03212 Transcription repress 96.3 0.0091 2E-07 58.7 6.3 63 119-182 66-132 (249)
8 PLN03091 hypothetical protein; 96.1 0.0085 1.8E-07 63.1 5.6 63 119-182 55-121 (459)
9 PLN03212 Transcription repress 80.7 1 2.3E-05 44.6 2.2 51 124-174 22-73 (249)
10 PF13837 Myb_DNA-bind_4: Myb/S 73.5 0.98 2.1E-05 36.4 -0.2 55 128-182 2-73 (90)
11 cd05126 Mth938 Mth938 domain. 59.1 7.4 0.00016 34.2 2.3 31 329-360 77-107 (117)
12 cd05560 Xcc1710_like Xcc1710_l 58.9 7.2 0.00016 33.7 2.2 32 328-360 69-100 (109)
13 cd00248 Mth938-like Mth938-lik 58.8 8.2 0.00018 33.2 2.6 32 328-360 69-100 (109)
14 PLN03091 hypothetical protein; 58.1 5 0.00011 42.9 1.3 51 123-173 10-61 (459)
15 COG1168 MalY Bifunctional PLP- 57.1 8.9 0.00019 40.4 2.9 26 129-156 174-199 (388)
16 PF14597 Lactamase_B_5: Metall 56.3 8.1 0.00018 37.1 2.3 74 66-171 6-79 (199)
17 PF13873 Myb_DNA-bind_5: Myb/S 53.6 22 0.00047 28.1 4.1 48 127-177 2-49 (78)
18 PF04430 DUF498: Protein of un 53.1 7.4 0.00016 33.3 1.4 32 328-360 70-101 (110)
19 PF08963 DUF1878: Protein of u 52.6 7.2 0.00016 34.5 1.2 31 116-146 24-54 (113)
20 PHA00649 hypothetical protein 52.1 42 0.00091 27.6 5.3 41 326-373 15-55 (83)
21 cd05125 Mth938_2P1-like Mth938 47.3 14 0.0003 32.4 2.2 31 329-360 72-102 (114)
22 COG5114 Histone acetyltransfer 43.9 10 0.00022 39.3 0.8 47 125-172 61-108 (432)
23 PF03993 DUF349: Domain of Unk 29.7 97 0.0021 24.1 4.3 19 163-181 1-19 (77)
24 TIGR01557 myb_SHAQKYF myb-like 29.4 40 0.00087 26.1 1.9 41 129-169 5-50 (57)
25 cd03007 PDI_a_ERp29_N PDIa fam 29.1 51 0.0011 29.0 2.8 29 139-167 68-110 (116)
26 KOG0048 Transcription factor, 29.1 59 0.0013 31.6 3.5 53 127-180 62-115 (238)
27 KOG0457 Histone acetyltransfer 28.7 33 0.00073 36.7 1.8 47 125-172 70-117 (438)
28 cd03769 SR_IS607_transposase_l 27.4 72 0.0016 28.1 3.5 54 130-183 74-130 (134)
29 PRK08561 rps15p 30S ribosomal 26.7 80 0.0017 29.4 3.7 54 302-373 50-104 (151)
30 PRK08068 transaminase; Reviewe 26.6 60 0.0013 32.9 3.2 28 129-157 183-210 (389)
31 KOG0048 Transcription factor, 24.4 54 0.0012 31.8 2.3 37 128-164 10-47 (238)
32 cd04765 HTH_MlrA-like_sg2 Heli 23.5 1.5E+02 0.0032 25.0 4.5 34 328-364 62-95 (99)
33 PHA02550 32 single-stranded DN 23.1 97 0.0021 31.8 3.8 63 101-181 187-249 (304)
34 PF03776 MinE: Septum formatio 22.5 1.3E+02 0.0028 24.1 3.8 34 147-180 9-45 (70)
35 PRK06620 hypothetical protein; 22.0 1.5E+02 0.0032 28.3 4.7 41 129-169 96-136 (214)
36 TIGR01834 PHA_synth_III_E poly 21.9 2.4E+02 0.0052 29.3 6.4 48 325-384 271-318 (320)
37 PRK09147 succinyldiaminopimela 21.8 89 0.0019 31.8 3.4 28 129-157 182-209 (396)
38 PRK07681 aspartate aminotransf 21.3 92 0.002 31.7 3.4 28 129-157 182-209 (399)
39 KOG0049 Transcription factor, 21.1 45 0.00097 37.7 1.1 47 127-173 305-354 (939)
40 COG3623 SgaU Putative L-xylulo 20.7 1.8E+02 0.0039 29.4 5.0 68 112-179 33-104 (287)
41 PF08986 DUF1889: Domain of un 20.6 51 0.0011 28.8 1.1 26 318-343 41-66 (119)
42 KOG3055 Phosphoribosylformimin 20.6 57 0.0012 31.9 1.5 16 142-157 142-157 (263)
43 cd06227 Peptidase_M14-like_2 A 20.3 1.7E+02 0.0038 29.2 5.0 78 66-152 98-180 (272)
44 KOG2129 Uncharacterized conser 20.1 1.9E+02 0.0041 31.3 5.3 56 349-404 187-245 (552)
No 1
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.7e-104 Score=790.10 Aligned_cols=373 Identities=43% Similarity=0.658 Sum_probs=298.4
Q ss_pred CChhhhhCCCCC-CCCCc-ccccCCCCCCCCCCCCcccHHHHHhhC-CCCCCCccccccccccCCCCC-CCCCceecccc
Q 014894 1 MDAKDILGIPKT-QLPTT-QEKKSRPQKEPQRKPDGISREVYALTG-GLAPLMPSIDVSQLKKRPPSD-EKITWQWLPFT 76 (416)
Q Consensus 1 ~DvrDIL~l~~~-~~~~~-~~Kk~k~~~~~~krp~Gm~REv~~Llg-~~~P~~p~~~~~~~K~k~~~~-~~~~W~~~pF~ 76 (416)
+||+|||+||+. ...+. ++++.++++...+||+||||||||||| |.||++|+++. .||+++..+ ++++|.|+||+
T Consensus 4 aDirDIL~l~~~t~~~~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~n~pPL~ps~~~-~fkek~l~s~K~~~W~w~pFt 82 (445)
T KOG2656|consen 4 ADIRDILELPQKTRSLTNKQKSKPRSSTESRRRPEGMSREVYALLGENAPPLLPSDTN-NFKEKRLGSKKVRPWKWVPFT 82 (445)
T ss_pred ccHHHHhcCCCCCCCCcccccccCCCchhccCCCcchhHHHHHHhcCCCCCccccccc-hhhhccCccccCCCceeeccC
Confidence 699999999984 32332 222334455567899999999999999 57899998764 488776655 78899999999
Q ss_pred ccccCCCcEEeeeeecCCCCCCCCCCCcccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCC
Q 014894 77 NSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRF 156 (416)
Q Consensus 77 N~AR~D~l~L~HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy 156 (416)
||||+|+++||||||+.+. .+||||||||++|+||.||||||+.||.|+.||++|||||||||++||||||||+|||
T Consensus 83 n~aRkD~~~l~HWvr~~d~---~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRy 159 (445)
T KOG2656|consen 83 NSARKDDATLHHWVRVGDT---PKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRY 159 (445)
T ss_pred CccccCCceEEeeeeccCC---CCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeecc
Confidence 9999999999999999543 7899999999999999999999999999999999999999999999999999999998
Q ss_pred C-----CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCCChHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 014894 157 P-----SSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAK 231 (416)
Q Consensus 157 ~-----~~RtvEDLK~RyY~V~~~l~~~r~~~~~~~~~~~l~~~~fd~~~E~~RK~~L~~l~~RT~~q~~EEe~L~~E~k 231 (416)
+ .+|||||||||||+||++|+.+|++++++. +-.++||++||++||+||++||+||++||+||++|++|+|
T Consensus 160 d~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sdl----lk~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~K 235 (445)
T KOG2656|consen 160 DNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSDL----LKSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELK 235 (445)
T ss_pred chhhccccccHHHHHHHHHHHHHHHHHccCCCchhh----hhccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5 479999999999999999999999876551 2237999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCccc-cCC-----ccccccccc--cCCCCCCCCCCCCCCcccCCCcc--ccccchhhhhhhcc
Q 014894 232 RITDSRMASRAAEEPEMPVAS-HVG-----SESADRAVV--LGDTVSPSSNIQLPSATVVPSTS--IIADSASTLASLRM 301 (416)
Q Consensus 232 rie~~R~~er~~~e~~l~~~~-~~~-----~~~~~~~~~--p~~~~~~~~~~~~p~~~~~p~~~--~~a~~~~~~~~lr~ 301 (416)
||| +|++++..+.+++.... .+. ...+.+.+. +......+. +.+..+..|++. +...+.+.++.++.
T Consensus 236 kiE-arkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~~~~~a~kt~--~k~~~a~v~a~~~~s~~ss~~~F~~~~~ 312 (445)
T KOG2656|consen 236 KIE-ARKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLENALLAKKTR--QKKHEANVPASPRESWMSSGIKFADLRV 312 (445)
T ss_pred HHH-HHhhhhhhhhHHHHHhhhcccccccccccChhHHHHHHHHhhhhhh--cccccccCccccchhhhhhhhhcccchh
Confidence 999 56677777766652211 111 111111100 000000000 000111111111 11223456778888
Q ss_pred cceEeehHhHHHHHHhhccchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014894 302 LRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSY 381 (416)
Q Consensus 302 ~gVyLRs~~l~~~~~~~~~~~g~k~~krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~i~~LleLkk~l~k~E~El~~l 381 (416)
.||.||+++| ..++++|++++|+++|+|+++||.+.| .||+.||..|+|||++|++|++|++++..|++|++++
T Consensus 313 ~l~tlr~q~m-----~~panvgqrkiK~~EQ~lq~~~v~~sp-~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~e~~s~ 386 (445)
T KOG2656|consen 313 ALVTLRSQRM-----KQPANVGQRKIKRLEQELQELGVRLSP-APTEQLCKSFNELRSDVVTLLELSPALYLCEYELSSL 386 (445)
T ss_pred hhhccchhhc-----cCccccchhhhHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhhhhh
Confidence 8999999887 578899999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCC-CcCCC
Q 014894 382 RDGS-YIDMP 390 (416)
Q Consensus 382 r~~~-~~~~p 390 (416)
||++ +++|+
T Consensus 387 k~~~~~~~~~ 396 (445)
T KOG2656|consen 387 KHALNEALAI 396 (445)
T ss_pred hhhhhhhhhh
Confidence 9998 55443
No 2
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=100.00 E-value=1.1e-36 Score=279.36 Aligned_cols=160 Identities=27% Similarity=0.390 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCccccCCccc------------cccccccCCCCCCCCCCCCCCcccCCCcccc
Q 014894 222 KDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSES------------ADRAVVLGDTVSPSSNIQLPSATVVPSTSII 289 (416)
Q Consensus 222 EEe~L~~E~krie~~R~~er~~~e~~l~~~~~~~~~~------------~~~~~~p~~~~~~~~~~~~p~~~~~p~~~~~ 289 (416)
||++|+.|+|+|| +|+++|+++++||...+++.-.. .+..+. +...+..+.+..... .....
T Consensus 1 EEe~Li~ELrKIE-~RKkEREKK~qDLqkLit~ad~~~~~~~~~a~~rk~ekk~~----kKk~~~~~~~~~~~~-~~~v~ 74 (176)
T PF05499_consen 1 EEEMLIAELRKIE-ARKKEREKKTQDLQKLITAADQQPTPATNTAEARKTEKKSS----KKKLPQKARPSKKKE-SPAVP 74 (176)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCCCCccHhhhhhhhccC----CcccccCCCcccccc-cccch
Confidence 7999999999999 68899999999986543322110 111110 011111111110000 00011
Q ss_pred ccchhhhhhhcccceEeehHhHHHHHHhhccchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 014894 290 ADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQK 369 (416)
Q Consensus 290 a~~~~~~~~lr~~gVyLRs~~l~~~~~~~~~~~g~k~~krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~i~~LleLkk 369 (416)
+.+.+.+++++++||||||++| ++|+++|+|++|+|+++|+||||+++| |||+.||+.||+||++|++|+|||+
T Consensus 75 ~~agikFpd~k~~GV~LRSq~m-----klp~~vGqKk~K~iEq~L~elgv~~~P-mPTe~Ic~~fneLRsdivlL~eLk~ 148 (176)
T PF05499_consen 75 ETAGIKFPDFKSAGVHLRSQRM-----KLPSSVGQKKTKAIEQFLQELGVDLNP-MPTEEICQEFNELRSDIVLLYELKQ 148 (176)
T ss_pred hhhccccccccCCceEeeeccc-----ccCcchhhHHHHHHHHHHHHcCCCCCC-CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245678899999999999999 699999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCcCCCCCC
Q 014894 370 QLQYKEAEGSSYRDGSYIDMPGTP 393 (416)
Q Consensus 370 ~l~k~E~El~~lr~~~~~~~p~~p 393 (416)
++++||+|+++|||+|+|+|||..
T Consensus 149 a~~~~E~El~~lr~r~eal~~gk~ 172 (176)
T PF05499_consen 149 ALQNCEYELQSLRHRYEALAPGKT 172 (176)
T ss_pred HHHHhHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999975
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.58 E-value=3.8e-05 Score=53.49 Aligned_cols=43 Identities=28% Similarity=0.594 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHH
Q 014894 129 MWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGV 172 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RyY~V 172 (416)
.||.+|...|..+|+.|+ .+|-.|+..++. ||.++++.|||.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~-rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCC-CCHHHHHHHHHHh
Confidence 499999999999999999 999999998865 9999999999975
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.35 E-value=0.00012 Score=51.61 Aligned_cols=45 Identities=31% Similarity=0.609 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHH
Q 014894 128 PMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVS 173 (416)
Q Consensus 128 ~~Wt~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RyY~V~ 173 (416)
..||.+|...|..++..|+ .+|-.|+..++ .||..+++.|||.+-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHc
Confidence 4699999999999999999 99999998886 899999999999864
No 5
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.34 E-value=7.2e-05 Score=54.95 Aligned_cols=44 Identities=32% Similarity=0.669 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHhhhcCcc-eEEEecCCCCCCCHHHHHHHHHHH
Q 014894 129 MWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEELKDRYYGV 172 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDLR-w~VI~DRy~~~RtvEDLK~RyY~V 172 (416)
.||.||.+.|.++++.|+-. |-.|++.++..||..+++.|||..
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 69999999999999999999 999999999999999999999964
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=96.97 E-value=0.00029 Score=53.59 Aligned_cols=41 Identities=32% Similarity=0.647 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHH
Q 014894 130 WTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYG 171 (416)
Q Consensus 130 Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RyY~ 171 (416)
||.||.+.|+.|+..|+-.|--|+..+ +.||..+++.||+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l-~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHL-GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHS-TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHH-CcCCHHHHHHHHHH
Confidence 999999999999999999999999998 48999999999999
No 7
>PLN03212 Transcription repressor MYB5; Provisional
Probab=96.25 E-value=0.0091 Score=58.71 Aligned_cols=63 Identities=25% Similarity=0.339 Sum_probs=54.6
Q ss_pred HHHHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 014894 119 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAP 182 (416)
Q Consensus 119 eEY~~~L~----d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RyY~V~~~l~~~r~~ 182 (416)
+=|..||. ...||.||-+.|+++...|+=+|..|+..+ +.||--++|.|||++.++.+..+.-
T Consensus 66 eRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~L-pGRTDnqIKNRWns~LrK~l~r~~i 132 (249)
T PLN03212 66 LRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRI-PGRTDNEIKNYWNTHLRKKLLRQGI 132 (249)
T ss_pred HHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhc-CCCCHHHHHHHHHHHHhHHHHhcCC
Confidence 33777774 468999999999999999999999999876 5699999999999999998877653
No 8
>PLN03091 hypothetical protein; Provisional
Probab=96.11 E-value=0.0085 Score=63.10 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=55.0
Q ss_pred HHHHhhcC----CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 014894 119 EEYEKYLT----DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAP 182 (416)
Q Consensus 119 eEY~~~L~----d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RyY~V~~~l~~~r~~ 182 (416)
+=|..||. ...||+||-..|++|.+.|+=+|.-|+..+ ..||--++|.|||.+.++.++.+.-
T Consensus 55 ERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~L-PGRTDnqIKNRWnslLKKklr~~~I 121 (459)
T PLN03091 55 LRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQL-PGRTDNEIKNLWNSCLKKKLRQRGI 121 (459)
T ss_pred HHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 44777774 457999999999999999999999999766 6899999999999999999888764
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=80.75 E-value=1 Score=44.55 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=44.6
Q ss_pred hcCCCCCCHHHHHHHHHHhhhcC-cceEEEecCCCCCCCHHHHHHHHHHHHH
Q 014894 124 YLTDPMWTKEETDQLFELCERFD-LRFIVIADRFPSSRTVEELKDRYYGVSR 174 (416)
Q Consensus 124 ~L~d~~Wt~eETdyLfdLc~~fD-LRw~VI~DRy~~~RtvEDLK~RyY~V~~ 174 (416)
-|+-..||.||-..|..++++|. -+|-.|+-+.+..||--..++||+..-+
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhc
Confidence 34556799999999999999998 5899999887778999999999998765
No 10
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=73.50 E-value=0.98 Score=36.35 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHhhh--cCcce------------EEEecCC---CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 014894 128 PMWTKEETDQLFELCER--FDLRF------------IVIADRF---PSSRTVEELKDRYYGVSRAILIARAP 182 (416)
Q Consensus 128 ~~Wt~eETdyLfdLc~~--fDLRw------------~VI~DRy---~~~RtvEDLK~RyY~V~~~l~~~r~~ 182 (416)
..||.+||..|+++..+ ++.+| -.|++.. +..||.++++.++=++.+.+-..+..
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~ 73 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDR 73 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 36999999999999999 66654 3333332 45899999999999999999988764
No 11
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=59.08 E-value=7.4 Score=34.20 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 014894 329 RVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (416)
Q Consensus 329 rIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~ 360 (416)
.+-+.|.+.||..-. |+|.+.|..||.|.++
T Consensus 77 ~~~~~l~~~Gi~ve~-m~T~aAcrTYN~L~~E 107 (117)
T cd05126 77 ETVEKLEKRGVEVLV-LPTEEAVKRYNELAGK 107 (117)
T ss_pred HHHHHHHhcCCEEEE-cChHHHHHHHHHHHhC
Confidence 566699999999766 9999999999999864
No 12
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=58.92 E-value=7.2 Score=33.68 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 014894 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (416)
Q Consensus 328 krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~ 360 (416)
..+.+.|.+.||..-. |+|.+-|..||.|.++
T Consensus 69 ~~~~~~l~~~gi~vE~-m~T~~AcrTyN~L~~E 100 (109)
T cd05560 69 PALLAPLLARGIGVEV-MDTQAACRTYNILMGE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 3577789999999766 9999999999999754
No 13
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=58.82 E-value=8.2 Score=33.24 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 014894 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (416)
Q Consensus 328 krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~ 360 (416)
..+...|.+.||..-. |+|.+-|..||.|.++
T Consensus 69 ~~~~~~l~~~gI~vE~-m~T~aAcrTyNiL~~E 100 (109)
T cd00248 69 RALRAALRAAGIGVEV-MSTGAACRTYNVLLSE 100 (109)
T ss_pred HHHHHHHHHcCCeEEE-eCcHHHHHHHHHHHhC
Confidence 4678899999999766 9999999999999764
No 14
>PLN03091 hypothetical protein; Provisional
Probab=58.12 E-value=5 Score=42.92 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=43.2
Q ss_pred hhcCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHHH
Q 014894 123 KYLTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGVS 173 (416)
Q Consensus 123 ~~L~d~~Wt~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RyY~V~ 173 (416)
.-|+-..||.||-..|..+..+|+- .|-.|+...+..||--+.++||+.+-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 3455667999999999999999996 59999877667899999999998654
No 15
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=57.13 E-value=8.9 Score=40.37 Aligned_cols=26 Identities=50% Similarity=0.912 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCC
Q 014894 129 MWTKEETDQLFELCERFDLRFIVIADRF 156 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDLRw~VI~DRy 156 (416)
-||+||-..|-+||++||+| ||.|=.
T Consensus 174 vwt~eeL~~i~elc~kh~v~--VISDEI 199 (388)
T COG1168 174 VWTKEELRKIAELCLRHGVR--VISDEI 199 (388)
T ss_pred cccHHHHHHHHHHHHHcCCE--EEeecc
Confidence 49999999999999999997 677765
No 16
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=56.35 E-value=8.1 Score=37.12 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=46.0
Q ss_pred CCCCceeccccccccCCCcEEeeeeecCCCCCCCCCCCcccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhc
Q 014894 66 EKITWQWLPFTNSARKDNLQLYHWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERF 145 (416)
Q Consensus 66 ~~~~W~~~pF~N~AR~D~l~L~HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETdyLfdLc~~f 145 (416)
++-=|.|.-| |++|+=++.=+-|++.. =|+=||-|.|+.+....+.. -=
T Consensus 6 rpdl~~Ws~f-n~~~n~dfng~~~~~p~-------------GnilIDP~~ls~~~~~~l~a-----------------~g 54 (199)
T PF14597_consen 6 RPDLFSWSWF-NEARNLDFNGHAWRRPE-------------GNILIDPPPLSAHDWKHLDA-----------------LG 54 (199)
T ss_dssp STTEEEEEEE-ETTTTEEEEEEEE--TT---------------EEES-----HHHHHHHHH-----------------TT
T ss_pred CCccchhhhc-ChhhccCceeEEEEcCC-------------CCEEecCccccHHHHHHHHh-----------------cC
Confidence 3446888888 77888788888899862 27778999999999875432 23
Q ss_pred CcceEEEecCCCCCCCHHHHHHHHHH
Q 014894 146 DLRFIVIADRFPSSRTVEELKDRYYG 171 (416)
Q Consensus 146 DLRw~VI~DRy~~~RtvEDLK~RyY~ 171 (416)
.++|||+.-| +..|.-++..++||.
T Consensus 55 gv~~IvLTn~-dHvR~A~~ya~~~~a 79 (199)
T PF14597_consen 55 GVAWIVLTNR-DHVRAAEDYAEQTGA 79 (199)
T ss_dssp --SEEE-SSG-GG-TTHHHHHHHS--
T ss_pred CceEEEEeCC-hhHhHHHHHHHHhCC
Confidence 6899999876 668999999999983
No 17
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=53.58 E-value=22 Score=28.08 Aligned_cols=48 Identities=21% Similarity=0.415 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 014894 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL 177 (416)
Q Consensus 127 d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RyY~V~~~l~ 177 (416)
.+.||.+|+..|.+|++++ ..||.++....-|..+-..-+-.|+..|.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~---~~il~~k~~~~~~~~~k~~~W~~I~~~lN 49 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH---KDILENKFSDSVSNKEKRKAWEEIAEELN 49 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh---HHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999884 44555555433334443333334444443
No 18
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=53.10 E-value=7.4 Score=33.32 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 014894 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (416)
Q Consensus 328 krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~ 360 (416)
..+...|++.||..-- |+|.+-|..||.|.++
T Consensus 70 ~~~~~~l~~~GI~ve~-m~T~~Ac~tyN~L~~E 101 (110)
T PF04430_consen 70 PELREYLRKKGIGVEV-MDTPAACRTYNILASE 101 (110)
T ss_dssp HHHHHHHHTTT-EEEE-E-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEE-ECHHHHHHHHHHHHhC
Confidence 4688899999999654 9999999999999865
No 19
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=52.56 E-value=7.2 Score=34.47 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=20.3
Q ss_pred CCHHHHHhhcCCCCCCHHHHHHHHHHhhhcC
Q 014894 116 YTDEEYEKYLTDPMWTKEETDQLFELCERFD 146 (416)
Q Consensus 116 ytdeEY~~~L~d~~Wt~eETdyLfdLc~~fD 146 (416)
+++--|...+-..+||++|++-.++||++++
T Consensus 24 ~~k~PFy~LvI~~~Ltkeevee~~~lce~l~ 54 (113)
T PF08963_consen 24 MEKYPFYALVIRKGLTKEEVEEFLRLCEELS 54 (113)
T ss_dssp TTT-HHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3333344455567899999999999999853
No 20
>PHA00649 hypothetical protein
Probab=52.06 E-value=42 Score=27.60 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014894 326 TIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY 373 (416)
Q Consensus 326 ~~krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~i~~LleLkk~l~k 373 (416)
.-+.|.++|.-|||+.+- |- .| +|+|.++.-+-..||+.++
T Consensus 15 A~rAV~~~~~~LGVD~~~--P~-~V----EEFr~D~~~~Rr~RKA~D~ 55 (83)
T PHA00649 15 ADRAVKKVFAILGVDVDV--PE-QV----EEFREDLRFGRRMRKAADH 55 (83)
T ss_pred HHHHHHHHHHHHcCCCCC--HH-HH----HHHHHHHHHHHHHHHHhhc
Confidence 347899999999999763 43 33 8999999999999999873
No 21
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=47.29 E-value=14 Score=32.38 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 014894 329 RVEQALQELGVNLKPKVPTKAVCAEHLELRKE 360 (416)
Q Consensus 329 rIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~ 360 (416)
.+...|.+.||..-. |+|.+-|..||.|.++
T Consensus 72 ~~~~~l~~~gi~vev-m~T~~AcrtyN~L~~E 102 (114)
T cd05125 72 ELRKYFKKLGIAVEV-VDTRNACATFNFLAEE 102 (114)
T ss_pred HHHHHHHHcCCEEEE-ECHHHHHHHHHHHHhC
Confidence 566888899999765 9999999999999753
No 22
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.90 E-value=10 Score=39.29 Aligned_cols=47 Identities=30% Similarity=0.450 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 014894 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (416)
Q Consensus 125 L~d~~Wt~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RyY~V 172 (416)
+-+++|+-.|--.|.+-|...+| .|-=|+|-.+ +|+-||.|+.||..
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~ 108 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKM 108 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHH
Confidence 34789999999999999999998 6888888666 99999999999864
No 23
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=29.75 E-value=97 Score=24.09 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 014894 163 EELKDRYYGVSRAILIARA 181 (416)
Q Consensus 163 EDLK~RyY~V~~~l~~~r~ 181 (416)
|+|..||..+|..+...|.
T Consensus 1 d~Lw~~F~~a~~~~~~~~~ 19 (77)
T PF03993_consen 1 DELWKRFRAACDAFFDRRK 19 (77)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5799999999999998875
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=29.45 E-value=40 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.327 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHhhhcCc-ce---EEEecCCCCCC-CHHHHHHHH
Q 014894 129 MWTKEETDQLFELCERFDL-RF---IVIADRFPSSR-TVEELKDRY 169 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDL-Rw---~VI~DRy~~~R-tvEDLK~Ry 169 (416)
.||.||-....+=++.|+. .| --|.+-+...+ |.+.++.++
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHL 50 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHH
Confidence 5999999999999999998 89 66777777666 888887765
No 25
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=29.12 E-value=51 Score=29.01 Aligned_cols=29 Identities=38% Similarity=0.665 Sum_probs=22.2
Q ss_pred HHHhhhcCcc---eEEE-----ec-----CCCCC-CCHHHHHH
Q 014894 139 FELCERFDLR---FIVI-----AD-----RFPSS-RTVEELKD 167 (416)
Q Consensus 139 fdLc~~fDLR---w~VI-----~D-----Ry~~~-RtvEDLK~ 167 (416)
-+||.+|+++ |+.| .+ .|.+. ||.++|..
T Consensus 68 ~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~ 110 (116)
T cd03007 68 MELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQR 110 (116)
T ss_pred HHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHH
Confidence 4899999997 7755 22 47775 99999974
No 26
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=29.07 E-value=59 Score=31.61 Aligned_cols=53 Identities=25% Similarity=0.380 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHH-HHHHHHhc
Q 014894 127 DPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGV-SRAILIAR 180 (416)
Q Consensus 127 d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RyY~V-~~~l~~~r 180 (416)
-..||.||.+-++.|-..|+-||-+|+=+. +.||--++|--.=+- ++++....
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GNrWs~IA~~L-PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGNRWSLIAGRL-PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCcHHHHHHhhC-CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999998554 579999998766443 45555444
No 27
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=28.67 E-value=33 Score=36.68 Aligned_cols=47 Identities=34% Similarity=0.576 Sum_probs=41.5
Q ss_pred cCCCCCCHHHHHHHHHHhhhcCc-ceEEEecCCCCCCCHHHHHHHHHHH
Q 014894 125 LTDPMWTKEETDQLFELCERFDL-RFIVIADRFPSSRTVEELKDRYYGV 172 (416)
Q Consensus 125 L~d~~Wt~eETdyLfdLc~~fDL-Rw~VI~DRy~~~RtvEDLK~RyY~V 172 (416)
+-+++||-+|--.|.+-|..|++ .|-=|+|-.+ .+|=||-|+.|+..
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~ 117 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKH 117 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHH
Confidence 45789999999999999999998 6887877666 89999999999864
No 28
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=27.36 E-value=72 Score=28.11 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHhhhcCcceEEEecCCCC---CCCHHHHHHHHHHHHHHHHHhcCCC
Q 014894 130 WTKEETDQLFELCERFDLRFIVIADRFPS---SRTVEELKDRYYGVSRAILIARAPS 183 (416)
Q Consensus 130 Wt~eETdyLfdLc~~fDLRw~VI~DRy~~---~RtvEDLK~RyY~V~~~l~~~r~~~ 183 (416)
+++.--|++..+|+..+++++++.+-++. ..-+..+-.=.-+++++++..|.+.
T Consensus 74 l~R~~~d~~~~~l~~~gv~l~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 130 (134)
T cd03769 74 LARFGFELLEELFKAYGVEIVVINQEENEELEQELVEDLIEIITSFSARLYGKRSHK 130 (134)
T ss_pred HHHhhHHHHHHHHHHCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 77777778888999999999999988762 3677888888999999999988764
No 29
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=26.73 E-value=80 Score=29.39 Aligned_cols=54 Identities=31% Similarity=0.511 Sum_probs=32.3
Q ss_pred cceEeehHh-HHHHHHhhccchhhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014894 302 LRVYLRTYA-LEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY 373 (416)
Q Consensus 302 ~gVyLRs~~-l~~~~~~~~~~~g~k~~krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~i~~LleLkk~l~k 373 (416)
-|+.||-+. ++ .+..-+-++|..+|.|-|+. |.+|- +|..-|--...|+++++.
T Consensus 50 IG~~LRD~~gip--------~Vk~vtG~ki~~iLk~~gl~--p~iPE--------DL~~L~~ri~~L~~HL~~ 104 (151)
T PRK08561 50 IGIILRDQYGIP--------DVKLITGKKITEILEENGLA--PEIPE--------DLRNLIKKAVNLRKHLEE 104 (151)
T ss_pred hhhhHhhccCCC--------ceeeeccchHHHHHHHcCCC--CCCcH--------HHHHHHHHHHHHHHHHHh
Confidence 489999773 22 22222347899999999995 66773 344444444444555443
No 30
>PRK08068 transaminase; Reviewed
Probab=26.65 E-value=60 Score=32.93 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 014894 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (416)
.|+.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 183 ~~s~~~~~~l~~la~~~~~-~ii~Deay~ 210 (389)
T PRK08068 183 VATKAFFEETVAFAKKHNI-GVVHDFAYG 210 (389)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEEehhhh
Confidence 4999999999999999998 777777763
No 31
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=24.43 E-value=54 Score=31.84 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHhhhcCcc-eEEEecCCCCCCCHHH
Q 014894 128 PMWTKEETDQLFELCERFDLR-FIVIADRFPSSRTVEE 164 (416)
Q Consensus 128 ~~Wt~eETdyLfdLc~~fDLR-w~VI~DRy~~~RtvED 164 (416)
..||.||-+-|.++.+.|+-+ |..|....+-.|+=-.
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKS 47 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKS 47 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchH
Confidence 679999999999999999988 9999988764444333
No 32
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=23.48 E-value=1.5e+02 Score=25.04 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 014894 328 KRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTL 364 (416)
Q Consensus 328 krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~i~~L 364 (416)
+.|..+|...+ ....|++++.+.+.+++.+++.|
T Consensus 62 ~~i~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~l 95 (99)
T cd04765 62 EGAKQALKEDG---AAAIREEEAEERLPSIRAELLDL 95 (99)
T ss_pred HHHHHHHHhcc---ccccchhhHHHHHHHHHHHHHHH
Confidence 34444444333 33356777877777777777655
No 33
>PHA02550 32 single-stranded DNA binding protein; Provisional
Probab=23.06 E-value=97 Score=31.78 Aligned_cols=63 Identities=25% Similarity=0.494 Sum_probs=47.6
Q ss_pred CCCcccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHHHhc
Q 014894 101 DYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIAR 180 (416)
Q Consensus 101 ~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~RyY~V~~~l~~~r 180 (416)
.|.=.+|-....|+.+.||+|.+.| |. +++||.=++-.|-| .|.|+|+.||=.|...=+..+
T Consensus 187 NYD~s~f~~~s~l~~i~De~~~~~i----we-----------~~hdL~e~~a~~~F---Ksye~L~~rf~kVmG~s~~~~ 248 (304)
T PHA02550 187 NYDDSKFAAPSPLPNIDDEAFQKEI----WE-----------QMHDLSEFVAPDKF---KSYEELETKFNKVMGTSAVGG 248 (304)
T ss_pred CcccccccccccCCCCCcHHHHHHH----HH-----------hcccHHHHhCHHhc---CCHHHHHHHHHHHhccccccc
Confidence 4666788888899999999998766 22 56777777777666 799999999999986444444
Q ss_pred C
Q 014894 181 A 181 (416)
Q Consensus 181 ~ 181 (416)
+
T Consensus 249 a 249 (304)
T PHA02550 249 A 249 (304)
T ss_pred c
Confidence 3
No 34
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=22.55 E-value=1.3e+02 Score=24.08 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=27.9
Q ss_pred cceEEEecCCCC-C--CCHHHHHHHHHHHHHHHHHhc
Q 014894 147 LRFIVIADRFPS-S--RTVEELKDRYYGVSRAILIAR 180 (416)
Q Consensus 147 LRw~VI~DRy~~-~--RtvEDLK~RyY~V~~~l~~~r 180 (416)
|+.++++||-+. + -.++.||.=-..|.++++..-
T Consensus 9 Lk~iL~~dR~~~~~~~~~l~~lk~eil~viskYv~i~ 45 (70)
T PF03776_consen 9 LKLILAHDRGGLSPQPDYLEQLKKEILEVISKYVEID 45 (70)
T ss_dssp EEEEEEEECCSC-CTTSSHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhheecC
Confidence 788999999864 4 699999999999999999763
No 35
>PRK06620 hypothetical protein; Validated
Probab=21.96 E-value=1.5e+02 Score=28.27 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHH
Q 014894 129 MWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRY 169 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDLRw~VI~DRy~~~RtvEDLK~Ry 169 (416)
.|+.++--|||+.|++=+-..+|-+|+.+..-++.||+.|.
T Consensus 96 ~~~~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 96 NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 58777888999999999987788888887777789999887
No 36
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=21.86 E-value=2.4e+02 Score=29.28 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 014894 325 RTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDG 384 (416)
Q Consensus 325 k~~krIe~~L~ELgv~~~P~mPT~~Vc~~f~eLR~~i~~LleLkk~l~k~E~El~~lr~~ 384 (416)
...+-++.+|.-||+| |+. +|..---.|.+||+.+..++.+|..|..+
T Consensus 271 ~~qe~~e~~L~~LnlP------TRs------ElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 271 QQQEIVEALLKMLNLP------TRS------ELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHhCCCC------CHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3556788899999885 443 22222235678899999999988877654
No 37
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=21.77 E-value=89 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 014894 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (416)
-||.++-..|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~l~~~a~~~~~-~ii~De~y~ 209 (396)
T PRK09147 182 VLPLDDWKKLFALSDRYGF-VIASDECYS 209 (396)
T ss_pred cCCHHHHHHHHHHHHHcCe-EEEeecccc
Confidence 5999999999999999987 566666564
No 38
>PRK07681 aspartate aminotransferase; Provisional
Probab=21.31 E-value=92 Score=31.74 Aligned_cols=28 Identities=7% Similarity=0.237 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHhhhcCcceEEEecCCC
Q 014894 129 MWTKEETDQLFELCERFDLRFIVIADRFP 157 (416)
Q Consensus 129 ~Wt~eETdyLfdLc~~fDLRw~VI~DRy~ 157 (416)
-||.+|-..|.++|+++|+ |+|+-|-|.
T Consensus 182 ~~s~~~~~~i~~~a~~~~~-~iI~De~y~ 209 (399)
T PRK07681 182 MAHEDFFKEVIAFAKKHNI-IVVHDFAYA 209 (399)
T ss_pred CCCHHHHHHHHHHHHHcCe-EEEEeccch
Confidence 4999999999999999998 777777664
No 39
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=21.15 E-value=45 Score=37.74 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHhhhcCcceEEEecCC---CCCCCHHHHHHHHHHHH
Q 014894 127 DPMWTKEETDQLFELCERFDLRFIVIADRF---PSSRTVEELKDRYYGVS 173 (416)
Q Consensus 127 d~~Wt~eETdyLfdLc~~fDLRw~VI~DRy---~~~RtvEDLK~RyY~V~ 173 (416)
...||.||-+-|..|+.+--.-=+|=|||. -..||--.|--|||.+-
T Consensus 305 ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~L 354 (939)
T KOG0049|consen 305 EKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTL 354 (939)
T ss_pred hhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheecc
Confidence 457999999999999999999999999985 36899999999999764
No 40
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.74 E-value=1.8e+02 Score=29.37 Aligned_cols=68 Identities=21% Similarity=0.305 Sum_probs=51.5
Q ss_pred ccccCCHHHHHhhcCCCCCCHHHHHHHHHHhhhcCcceEEE----ecCCCCCCCHHHHHHHHHHHHHHHHHh
Q 014894 112 DVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVI----ADRFPSSRTVEELKDRYYGVSRAILIA 179 (416)
Q Consensus 112 ~ip~ytdeEY~~~L~d~~Wt~eETdyLfdLc~~fDLRw~VI----~DRy~~~RtvEDLK~RyY~V~~~l~~~ 179 (416)
|..++|-+|=+.-|.-=+||++|--.|-.+|.+.+.|.+-+ |-||+-.--=+-+-++=+.|..+-+..
T Consensus 33 DFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~L 104 (287)
T COG3623 33 DFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQL 104 (287)
T ss_pred CeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566777777777777999999999999999999999987 678873222355667777777665553
No 41
>PF08986 DUF1889: Domain of unknown function (DUF1889); InterPro: IPR015079 This family consist of hypothetical bacterial proteins. ; PDB: 2JN8_A 2ES9_A.
Probab=20.64 E-value=51 Score=28.76 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=16.9
Q ss_pred hccchhhhHHHHHHHHHHHhCCCCCC
Q 014894 318 ASSSAGLRTIKRVEQALQELGVNLKP 343 (416)
Q Consensus 318 ~~~~~g~k~~krIe~~L~ELgv~~~P 343 (416)
.|.+....++|-|-..|.|||||..|
T Consensus 41 ~P~sMdESTAKGi~KyL~elGvPasa 66 (119)
T PF08986_consen 41 VPHSMDESTAKGIFKYLKELGVPASA 66 (119)
T ss_dssp S--HCCCHHHHHHHHHHHHCT----H
T ss_pred CCCccchHHHHHHHHHHHHcCCCCCH
Confidence 45566677899999999999998654
No 42
>KOG3055 consensus Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=20.56 E-value=57 Score=31.87 Aligned_cols=16 Identities=19% Similarity=0.632 Sum_probs=14.8
Q ss_pred hhhcCcceEEEecCCC
Q 014894 142 CERFDLRFIVIADRFP 157 (416)
Q Consensus 142 c~~fDLRw~VI~DRy~ 157 (416)
||+=|-||+|..|||.
T Consensus 142 CRkkDgRw~~a~nkWQ 157 (263)
T KOG3055|consen 142 CRKKDGRWAIATNKWQ 157 (263)
T ss_pred eeccCCeEEEEechhh
Confidence 8999999999999993
No 43
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=20.28 E-value=1.7e+02 Score=29.19 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=54.1
Q ss_pred CCCCceeccccccccCCCcEEe-----eeeecCCCCCCCCCCCcccccCCCccccCCHHHHHhhcCCCCCCHHHHHHHHH
Q 014894 66 EKITWQWLPFTNSARKDNLQLY-----HWVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFE 140 (416)
Q Consensus 66 ~~~~W~~~pF~N~AR~D~l~L~-----HWvr~~~~~~~~~~y~FaKfN~~v~ip~ytdeEY~~~L~d~~Wt~eETdyLfd 140 (416)
....|--.|.-|| ||.... .|++-..+++..-.|+| .|+..-. .+-++.|. -...-|.-||.-+.+
T Consensus 98 ~~~~i~ivP~~NP---DG~~~~~~~~~~wR~N~~GVDLNRNf~~-~w~~~~~--~~~~~~y~---G~~~~sEpEt~av~~ 168 (272)
T cd06227 98 DNFDLKIIPNENP---DGRKKVESGNYCLRENENGVDLNRNYGA-DWGFKED--DYEDEEYS---GPAPFSEPETRVLRD 168 (272)
T ss_pred hcCcEEEEeccCC---chheeEeccCcccccCCccccccccCCc-ccccCCC--CccccccC---CCCCCCcHHHHHHHH
Confidence 4468999999995 999874 59988777777777775 5555332 22333342 123457899999999
Q ss_pred HhhhcCcceEEE
Q 014894 141 LCERFDLRFIVI 152 (416)
Q Consensus 141 Lc~~fDLRw~VI 152 (416)
+++++...++|-
T Consensus 169 ~~~~~~~~~~i~ 180 (272)
T cd06227 169 LLTSFSPDVFLS 180 (272)
T ss_pred HHHhCCCeEEEE
Confidence 999987665554
No 44
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=20.05 E-value=1.9e+02 Score=31.34 Aligned_cols=56 Identities=20% Similarity=0.138 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhccC--CCcCCCCCCCcccccccccc
Q 014894 349 AVCAEHLELRKEILTLL-NLQKQLQYKEAEGSSYRDG--SYIDMPGTPKVGLLIFDFFF 404 (416)
Q Consensus 349 ~Vc~~f~eLR~~i~~Ll-eLkk~l~k~E~El~~lr~~--~~~~~p~~p~~~~~~~~~~~ 404 (416)
+-++.++.|-++--.|. .|=|.+|++|+|..+|... -...+|.+|.|-.-+||.-+
T Consensus 187 e~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~g 245 (552)
T KOG2129|consen 187 EAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHG 245 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccC
Confidence 44566666655554444 4788999999999999775 45668999999888888743
Done!