Query 014895
Match_columns 416
No_of_seqs 161 out of 597
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04149 sat sulfate adenylylt 100.0 4E-114 8E-119 878.7 34.9 330 64-414 2-332 (391)
2 COG2046 MET3 ATP sulfurylase ( 100.0 1E-113 2E-118 856.8 30.3 327 64-414 2-328 (397)
3 PRK05537 bifunctional sulfate 100.0 5E-111 1E-115 891.3 34.8 337 65-414 1-337 (568)
4 cd00517 ATPS ATP-sulfurylase. 100.0 2E-107 3E-112 821.4 32.5 306 93-414 1-306 (353)
5 TIGR00339 sopT ATP sulphurylas 100.0 3E-106 7E-111 819.3 34.8 335 68-414 1-336 (383)
6 KOG4238 Bifunctional ATP sulfu 100.0 3.8E-76 8.3E-81 587.4 19.0 337 72-412 231-572 (627)
7 PF01747 ATP-sulfurylase: ATP- 100.0 1.9E-65 4.1E-70 485.6 16.3 166 236-414 1-166 (215)
8 KOG0636 ATP sulfurylase (sulfa 100.0 4.2E-57 9.2E-62 449.0 4.9 355 58-413 42-400 (466)
9 PF14306 PUA_2: PUA-like domai 100.0 1.9E-54 4.2E-59 394.0 10.8 159 66-229 1-160 (160)
10 KOG0636 ATP sulfurylase (sulfa 100.0 8.4E-47 1.8E-51 375.6 -0.3 295 99-413 11-306 (466)
11 cd02039 cytidylyltransferase_l 98.6 5.3E-07 1.2E-11 77.6 10.8 94 263-370 7-105 (143)
12 cd02169 Citrate_lyase_ligase C 97.9 9.2E-05 2E-09 74.2 10.5 138 210-368 72-233 (297)
13 smart00764 Citrate_ly_lig Citr 96.8 0.0099 2.1E-07 55.7 9.8 125 256-406 2-146 (182)
14 cd02064 FAD_synthetase_N FAD s 95.2 0.21 4.5E-06 46.2 10.7 102 258-368 2-110 (180)
15 cd02163 PPAT Phosphopantethein 94.8 0.26 5.6E-06 44.6 9.9 82 263-366 7-88 (153)
16 cd02165 NMNAT Nicotinamide/nic 94.8 0.14 3E-06 47.6 8.2 110 263-392 7-122 (192)
17 PLN02945 nicotinamide-nucleoti 94.4 0.32 6.9E-06 47.2 10.0 104 257-367 22-140 (236)
18 PRK13670 hypothetical protein; 94.3 0.19 4.2E-06 52.5 8.9 97 258-369 6-106 (388)
19 cd02166 NMNAT_Archaea Nicotina 93.6 0.75 1.6E-05 42.2 10.4 91 263-365 7-101 (163)
20 cd02168 NMNAT_Nudix Nicotinami 93.4 0.58 1.3E-05 43.8 9.5 81 263-354 7-90 (181)
21 PF06574 FAD_syn: FAD syntheta 93.1 0.31 6.8E-06 44.6 6.9 134 256-406 6-146 (157)
22 TIGR00083 ribF riboflavin kina 92.7 2.2 4.7E-05 43.0 12.9 98 262-368 5-109 (288)
23 cd02167 NMNAT_NadR Nicotinamid 92.7 2 4.3E-05 39.3 11.6 84 263-357 7-94 (158)
24 cd02171 G3P_Cytidylyltransfera 92.4 0.34 7.4E-06 42.0 6.0 93 257-368 3-96 (129)
25 PRK00071 nadD nicotinic acid m 92.2 1 2.2E-05 42.3 9.4 112 263-392 12-128 (203)
26 PRK00168 coaD phosphopantethei 92.1 1.9 4.2E-05 39.2 10.8 83 262-366 8-90 (159)
27 TIGR01510 coaD_prev_kdtB pante 92.0 1.5 3.2E-05 39.7 9.9 82 263-366 7-88 (155)
28 TIGR00482 nicotinate (nicotina 91.8 0.8 1.7E-05 42.8 8.1 110 263-392 5-121 (193)
29 PRK06973 nicotinic acid mononu 91.8 1.3 2.9E-05 43.4 9.9 115 263-392 30-149 (243)
30 PRK13964 coaD phosphopantethei 91.6 0.91 2E-05 41.1 7.9 83 263-366 9-91 (140)
31 PRK01153 nicotinamide-nucleoti 91.4 1.6 3.5E-05 40.6 9.6 83 263-357 8-93 (174)
32 PRK13671 hypothetical protein; 91.3 1.2 2.6E-05 45.2 9.2 94 257-370 4-106 (298)
33 TIGR00125 cyt_tran_rel cytidyl 91.0 0.56 1.2E-05 35.6 5.2 54 261-319 5-61 (66)
34 PRK05627 bifunctional riboflav 90.3 6.8 0.00015 39.7 13.6 104 257-368 15-125 (305)
35 PRK00777 phosphopantetheine ad 89.6 4.1 9E-05 37.1 10.5 119 257-407 3-126 (153)
36 COG0669 CoaD Phosphopantethein 89.3 1.9 4.2E-05 40.1 8.0 80 263-364 10-89 (159)
37 cd09286 NMNAT_Eukarya Nicotina 88.5 5.7 0.00012 38.4 11.1 75 263-343 8-84 (225)
38 PF08218 Citrate_ly_lig: Citra 88.5 3.8 8.2E-05 39.0 9.5 103 256-371 2-121 (182)
39 COG1057 NadD Nicotinic acid mo 88.1 2.1 4.6E-05 40.9 7.8 111 263-392 11-128 (197)
40 cd02164 PPAT_CoAS phosphopante 88.0 1.7 3.7E-05 39.3 6.8 73 263-343 7-83 (143)
41 TIGR00124 cit_ly_ligase [citra 86.6 6 0.00013 40.6 10.5 132 254-406 140-290 (332)
42 COG0196 RibF FAD synthase [Coe 85.7 9.7 0.00021 38.9 11.4 101 257-367 17-125 (304)
43 PRK05379 bifunctional nicotina 85.3 7.3 0.00016 39.9 10.4 92 263-367 14-114 (340)
44 TIGR01527 arch_NMN_Atrans nico 84.7 6.5 0.00014 36.5 8.9 81 263-357 7-90 (165)
45 cd02172 RfaE_N N-terminal doma 84.5 5 0.00011 36.0 7.9 94 256-369 5-99 (144)
46 PRK07152 nadD putative nicotin 83.2 4.3 9.3E-05 41.4 7.7 110 263-392 9-125 (342)
47 TIGR01518 g3p_cytidyltrns glyc 82.6 2.4 5.3E-05 36.7 4.9 86 263-369 6-94 (125)
48 PF01467 CTP_transf_2: Cytidyl 81.2 2.9 6.3E-05 35.8 4.9 53 263-320 5-60 (157)
49 TIGR02199 rfaE_dom_II rfaE bif 80.9 12 0.00026 33.5 8.9 97 253-369 9-108 (144)
50 COG3053 CitC Citrate lyase syn 80.7 6.9 0.00015 40.1 7.9 175 211-410 104-301 (352)
51 PLN02388 phosphopantetheine ad 78.5 7 0.00015 36.9 6.8 102 256-371 20-123 (177)
52 COG1056 NadR Nicotinamide mono 77.6 4.4 9.6E-05 38.2 5.2 59 263-331 11-74 (172)
53 PRK08099 bifunctional DNA-bind 77.4 24 0.00051 37.1 11.0 97 257-366 54-168 (399)
54 PRK13793 nicotinamide-nucleoti 77.2 6.8 0.00015 37.6 6.4 76 265-356 14-94 (196)
55 cd02170 cytidylyltransferase c 77.1 9.5 0.00021 33.3 6.9 90 257-368 3-95 (136)
56 TIGR01526 nadR_NMN_Atrans nico 76.8 7.1 0.00015 39.7 6.9 51 263-320 9-62 (325)
57 PRK08887 nicotinic acid mononu 75.0 7.2 0.00016 36.1 5.9 109 263-392 10-126 (174)
58 TIGR00018 panC pantoate--beta- 75.0 2.1 4.5E-05 43.2 2.4 62 241-306 5-68 (282)
59 PRK07143 hypothetical protein; 71.1 19 0.0004 36.3 8.1 100 257-371 17-122 (279)
60 cd02156 nt_trans nucleotidyl t 66.7 12 0.00026 31.3 4.9 17 263-279 7-23 (105)
61 PF05636 HIGH_NTase1: HIGH Nuc 63.9 11 0.00024 39.6 5.1 94 258-371 6-108 (388)
62 PF02569 Pantoate_ligase: Pant 62.4 12 0.00026 37.8 4.8 67 241-311 5-73 (280)
63 cd00560 PanC Pantoate-beta-ala 59.8 6.6 0.00014 39.5 2.4 107 241-365 5-120 (277)
64 PRK00380 panC pantoate--beta-a 57.6 7 0.00015 39.3 2.2 54 241-298 5-61 (281)
65 PRK13477 bifunctional pantoate 57.1 11 0.00023 41.2 3.6 63 241-307 5-67 (512)
66 PF14359 DUF4406: Domain of un 55.8 24 0.00051 29.7 4.8 73 218-310 1-79 (92)
67 COG1323 Predicted nucleotidylt 55.0 62 0.0014 33.9 8.6 94 263-371 9-108 (358)
68 COG0414 PanC Panthothenate syn 51.5 24 0.00053 35.8 4.8 66 241-310 5-72 (285)
69 cd02174 CCT CTP:phosphocholine 50.3 83 0.0018 28.6 7.8 90 257-368 4-99 (150)
70 PLN02660 pantoate--beta-alanin 49.1 16 0.00036 36.9 3.3 61 241-305 4-66 (284)
71 PF09142 TruB_C: tRNA Pseudour 48.1 33 0.00071 26.3 4.1 33 151-183 4-45 (56)
72 cd00951 KDGDH 5-dehydro-4-deox 45.6 3.2E+02 0.0068 27.1 11.9 104 281-409 29-132 (289)
73 PTZ00308 ethanolamine-phosphat 43.7 1.1E+02 0.0024 31.8 8.4 89 256-368 12-106 (353)
74 COG0231 Efp Translation elonga 42.4 18 0.00039 32.5 2.1 66 91-179 60-125 (131)
75 PF12818 Tegument_dsDNA: dsDNA 38.8 3.1E+02 0.0067 27.8 10.5 141 215-371 120-281 (282)
76 cd00950 DHDPS Dihydrodipicolin 38.3 3.9E+02 0.0084 26.1 11.4 107 280-410 28-134 (284)
77 cd02781 MopB_CT_Acetylene-hydr 37.7 66 0.0014 27.5 4.9 34 151-184 35-70 (130)
78 PRK07562 ribonucleotide-diphos 37.6 56 0.0012 39.3 5.7 76 114-209 377-453 (1220)
79 PRK03620 5-dehydro-4-deoxygluc 37.3 4E+02 0.0087 26.6 11.1 104 281-409 36-139 (303)
80 cd02789 MopB_CT_FmdC-FwdD The 36.9 63 0.0014 27.3 4.6 34 151-184 33-68 (106)
81 cd02794 MopB_CT_DmsA-EC The Mo 36.9 52 0.0011 28.0 4.1 35 151-185 32-68 (121)
82 PRK04147 N-acetylneuraminate l 36.8 3.8E+02 0.0083 26.5 10.8 105 281-409 32-137 (293)
83 cd02173 ECT CTP:phosphoethanol 36.1 1E+02 0.0023 28.0 6.1 83 263-369 10-100 (152)
84 cd02785 MopB_CT_4 The MopB_CT_ 35.7 78 0.0017 27.0 5.0 36 151-186 34-71 (124)
85 cd02786 MopB_CT_3 The MopB_CT_ 35.4 57 0.0012 27.3 4.0 36 151-186 33-70 (116)
86 COG1355 Predicted dioxygenase 34.8 75 0.0016 32.3 5.3 44 329-373 46-91 (279)
87 TIGR02313 HpaI-NOT-DapA 2,4-di 33.7 4.9E+02 0.011 25.9 11.6 104 282-409 30-134 (294)
88 cd02790 MopB_CT_Formate-Dh_H F 33.1 66 0.0014 26.7 4.1 35 152-186 38-74 (116)
89 PF00701 DHDPS: Dihydrodipicol 32.7 3E+02 0.0065 27.0 9.2 108 278-410 27-135 (289)
90 cd02792 MopB_CT_Formate-Dh-Na- 32.4 78 0.0017 26.6 4.4 36 151-186 37-74 (122)
91 cd00508 MopB_CT_Fdh-Nap-like T 31.9 66 0.0014 26.7 3.9 34 152-185 38-73 (120)
92 PF01568 Molydop_binding: Moly 31.4 49 0.0011 27.2 3.0 33 152-184 33-67 (110)
93 TIGR01675 plant-AP plant acid 31.3 2.6E+02 0.0056 27.5 8.3 99 172-297 74-173 (229)
94 cd02779 MopB_CT_Arsenite-Ox Th 30.9 75 0.0016 26.9 4.1 36 151-186 35-72 (115)
95 cd02775 MopB_CT Molybdopterin- 30.9 76 0.0017 25.4 4.0 33 152-184 26-60 (101)
96 COG1500 Predicted exosome subu 30.8 16 0.00034 36.1 -0.1 71 136-226 11-87 (234)
97 cd02776 MopB_CT_Nitrate-R-NarG 30.3 87 0.0019 28.0 4.6 34 151-184 33-68 (141)
98 cd02788 MopB_CT_NDH-1_NuoG2-N7 30.2 91 0.002 25.7 4.4 34 151-184 31-66 (96)
99 COG1019 Predicted nucleotidylt 30.1 41 0.00088 31.5 2.4 53 262-321 12-69 (158)
100 cd02787 MopB_CT_ydeP The MopB_ 29.8 72 0.0016 26.7 3.8 34 151-184 33-68 (112)
101 cd02784 MopB_CT_PHLH The MopB_ 29.5 72 0.0016 28.6 3.9 34 151-184 40-75 (137)
102 PRK04980 hypothetical protein; 29.5 65 0.0014 28.0 3.4 30 159-188 30-60 (102)
103 cd02791 MopB_CT_Nitrate-R-NapA 29.0 1E+02 0.0022 25.9 4.6 35 151-185 37-73 (122)
104 smart00359 PUA Putative RNA-bi 28.4 65 0.0014 24.8 3.0 22 161-182 31-52 (77)
105 cd02780 MopB_CT_Tetrathionate_ 28.4 84 0.0018 27.6 4.1 35 151-185 32-68 (143)
106 PRK13599 putative peroxiredoxi 28.4 2.9E+02 0.0063 26.4 8.1 97 145-258 91-205 (215)
107 cd02777 MopB_CT_DMSOR-like The 28.1 84 0.0018 26.9 4.0 35 151-185 36-72 (127)
108 cd02778 MopB_CT_Thiosulfate-R- 27.3 96 0.0021 26.1 4.1 34 151-184 32-67 (123)
109 COG1370 Prefoldin, molecular c 27.0 61 0.0013 30.2 3.0 28 149-180 103-130 (155)
110 PRK14988 GMP/IMP nucleotidase; 26.9 5.4E+02 0.012 24.2 10.1 124 242-391 97-220 (224)
111 cd02793 MopB_CT_DMSOR-BSOR-TMA 26.7 89 0.0019 27.0 3.9 34 151-184 35-70 (129)
112 PF01472 PUA: PUA domain; Int 26.6 62 0.0014 25.6 2.7 31 148-182 22-52 (74)
113 PRK01170 phosphopantetheine ad 26.0 71 0.0015 33.0 3.6 56 258-320 3-62 (322)
114 cd04470 S1_EF-P_repeat_1 S1_EF 26.0 39 0.00084 26.2 1.3 23 157-179 36-58 (61)
115 KOG3199 Nicotinamide mononucle 25.0 1.2E+02 0.0027 29.8 4.8 63 257-319 10-74 (234)
116 cd04463 S1_EF_like S1_EF_like: 25.0 38 0.00081 25.2 1.1 23 157-179 33-55 (55)
117 PRK08395 fumarate hydratase; P 24.4 68 0.0015 30.1 2.9 23 148-170 2-24 (162)
118 TIGR03249 KdgD 5-dehydro-4-deo 24.3 7.1E+02 0.015 24.7 11.2 104 280-409 33-137 (296)
119 cd00953 KDG_aldolase KDG (2-ke 22.9 7.4E+02 0.016 24.4 12.1 103 280-410 27-129 (279)
120 cd03015 PRX_Typ2cys Peroxiredo 21.8 2.9E+02 0.0062 24.8 6.4 47 145-191 93-147 (173)
121 cd00954 NAL N-Acetylneuraminic 21.1 8E+02 0.017 24.2 11.6 106 281-410 29-136 (288)
122 TIGR01211 ELP3 histone acetylt 21.0 3.3E+02 0.0071 30.0 7.6 90 241-339 204-300 (522)
123 cd02783 MopB_CT_2 The MopB_CT_ 20.6 1.4E+02 0.0031 26.9 4.1 34 151-184 34-69 (156)
124 cd00408 DHDPS-like Dihydrodipi 20.4 7.9E+02 0.017 23.8 11.6 107 280-410 25-131 (281)
125 COG4118 Phd Antitoxin of toxin 20.2 1.2E+02 0.0026 25.3 3.2 28 156-184 16-43 (84)
No 1
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=100.00 E-value=3.6e-114 Score=878.75 Aligned_cols=330 Identities=32% Similarity=0.515 Sum_probs=316.3
Q ss_pred CCcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCee
Q 014895 64 SLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (416)
Q Consensus 64 ~~i~PhGg~Lv~l~v~~~~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~ 143 (416)
.++.||||+|++|+|+++++++++++|++||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++
T Consensus 2 ~~~~phgg~l~~l~v~~~~~~~~~~~a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~--~~~rL~~G~~- 78 (391)
T PRK04149 2 MLIPPHGGELVNRVVEGRDREEILEEAESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVV--EEMRLANGLV- 78 (391)
T ss_pred CCCCCCCCcchhccCCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHH--HhCcCCCCCC-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred ccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEee
Q 014895 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (416)
Q Consensus 144 ~wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (416)
|||||||+|++|++++|++|++|+|+ ++|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+
T Consensus 79 -wpiPi~L~v~~e~~~~l~~g~~vaL~-~~G~~va~l~V~evf~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~ 155 (391)
T PRK04149 79 -WSIPITLDVSEEDAASLKEGDEVALV-YKGEPYGVLEVEEIYTYDKKKEAEKVYKTTDEKHPGVKKLY-EQGDVYLAGP 155 (391)
T ss_pred -cceeEEEeCCHHHHhhCCCCCEEEEe-eCCEEEEEEEeeeEecCChHHHHHHHhCCCCcCCchHHHHH-hcCCEEEEeE
Confidence 89999999999999999999999999 79999999999999999999999999999999999999987 5799999999
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC
Q 014895 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA 303 (416)
Q Consensus 224 i~~l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~ 303 (416)
|++++++.+ ++|++||+||+|+|+.|+++||++|||||||||+|||||+|+|+| +|.+ +++||||++|+||+
T Consensus 156 i~~l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~VvafqTrnP~HraHe~l~~~a----~e~~---d~lll~plvG~~k~ 227 (391)
T PRK04149 156 VTLLNRKFH-EPFPRFWLTPAETRELFEEKGWKTVVAFQTRNPPHRAHEYLQKCA----LEIV---DGLLLNPLVGETKS 227 (391)
T ss_pred EEEeecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeecCCCCchHHHHHHHHH----HHhc---CeEEEecCcCCCCC
Confidence 999998775 579999999999999999999999999999999999999999865 4543 79999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCc
Q 014895 304 DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPD 383 (416)
Q Consensus 304 dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~ 383 (416)
||+|+++|||||+++++ ||||+++++|++||++|||||||||+||||+||||||||||||||||||| +|||+|
T Consensus 228 ~di~~~~r~~~~~~~~~-~y~p~~~v~l~~lp~~mryAGPrEa~lhAivrkN~GcTh~IvGrDHAG~g------~~Y~~~ 300 (391)
T PRK04149 228 GDIPAEVRMEAYEALLK-NYYPKDRVLLSVTPAAMRYAGPREAIFHAIVRKNYGCTHFIVGRDHAGVG------DYYGPY 300 (391)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCcc------ccCCCc
Confidence 99999999999999996 69999999999999999999999999999999999999999999999999 699999
Q ss_pred hHHHHHHhh-cCCCceeEeeeeeeeeeeccCC
Q 014895 384 HGKKVLSMA-LGLEKLNILPFRVGIIVHFNSS 414 (416)
Q Consensus 384 ~aq~i~~~~-~~~~~i~i~p~~~~~Y~~~~~~ 414 (416)
+||+||+++ +++.+|+|++|++++||++|..
T Consensus 301 ~aq~i~~~~~~~~l~I~~v~~~~~~Yc~~c~~ 332 (391)
T PRK04149 301 DAQEIFDEFTEEELGITPLKFEEAFYCPKCGG 332 (391)
T ss_pred hHHHHHHhCCcccCCceEEecceeEEecCCCe
Confidence 999999998 6788999999999999999963
No 2
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-113 Score=856.82 Aligned_cols=327 Identities=30% Similarity=0.518 Sum_probs=311.9
Q ss_pred CCcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCee
Q 014895 64 SLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIV 143 (416)
Q Consensus 64 ~~i~PhGg~Lv~l~v~~~~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~ 143 (416)
.++.||||+||++++.+.+ ..+.+..+|+|+|+.+.++||+||++|+||||+||||++||+||+ ++|||+||++
T Consensus 2 ~~~~phgg~Lv~r~~~~~~---~~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv--~~mRL~~G~~- 75 (397)
T COG2046 2 ALSPPHGGKLVRRVAEERD---AMKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVV--ESMRLANGTL- 75 (397)
T ss_pred CCCCCCcchhhhhhccccc---hHHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHH--HhccccCCCe-
Confidence 3568999999999998866 677889999999999999999999999999999999999999999 8999999999
Q ss_pred ccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEee
Q 014895 144 NMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGD 223 (416)
Q Consensus 144 ~wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~ 223 (416)
||+||||||++|+|..+++||+|.|.. .|.++|+|+|+|+|++||..+|++||+|+|++||||+.++ .+|+++|||+
T Consensus 76 -w~iPItl~v~e~~a~~~~~Gd~i~L~~-~g~piavl~veevy~~dk~~eA~~v~~t~D~~HPgv~~l~-~~g~~~laG~ 152 (397)
T COG2046 76 -WPIPITLDVSEEEAEELSVGDRILLTY-KGDPIAVLTVEEVYKPDKKLEAKNVFKTSDIKHPGVKKLY-DMGDYYLAGK 152 (397)
T ss_pred -eeeeeEecCchHhhhccCCCCEEEEcc-CCceEEEEEeeeecccCHHHHHHHhcCCCCCCCCceeeee-ccCCeEeeee
Confidence 899999999999999999999999985 9999999999999999999999999999999999999987 6999999999
Q ss_pred EEEecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC
Q 014895 224 LEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA 303 (416)
Q Consensus 224 i~~l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~ 303 (416)
||+++.|.++ +|++|+++|+|+|+.|++|||++|||||||||+|||||||||.| ++.. ++|||||+||+||+
T Consensus 153 i~l~~~p~~~-~~~~~~~~P~~~R~~f~~kgwk~vvafQTRNp~HraHEyl~K~A----l~~v---dgllv~plVG~tk~ 224 (397)
T COG2046 153 IELINEPIFK-PFPKYWLTPAETREVFKEKGWKTVVAFQTRNPPHRAHEYLQKRA----LEKV---DGLLVHPLVGATKP 224 (397)
T ss_pred EEEEecCCCC-CchhhccCHHHHHHHHHhcCCeEEEEEecCCCchHHHHHHHHHH----HHhc---CcEEEEeeeccccC
Confidence 9999988876 89999999999999999999999999999999999999999855 4543 78999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCc
Q 014895 304 DDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPD 383 (416)
Q Consensus 304 dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~ 383 (416)
||+|+++||++||++++ +|||+++++|+++|++|||||||||+|||||||||||||||||||||||| +|||+|
T Consensus 225 gD~~~e~rm~~ye~l~~-~Yyp~dr~~Ls~~~~aMRyagPrEa~~HaIIRkNyGcTHfIVGRDHAGvG------~yYg~Y 297 (397)
T COG2046 225 GDIPDEVRMEYYEALLK-HYYPPDRVFLSVLPAAMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DYYGPY 297 (397)
T ss_pred CCchHHHHHHHHHHHHH-hCCCCCcEEEEecHHHhhhcCcHHHHHHHHHHhhcCCeeeeecCCCCCcc------ccCCcc
Confidence 99999999999999995 79999999999999999999999999999999999999999999999999 699999
Q ss_pred hHHHHHHhhcCCCceeEeeeeeeeeeeccCC
Q 014895 384 HGKKVLSMALGLEKLNILPFRVGIIVHFNSS 414 (416)
Q Consensus 384 ~aq~i~~~~~~~~~i~i~p~~~~~Y~~~~~~ 414 (416)
+||+||++|+.+.||++++|++++||+.|++
T Consensus 298 ~aq~if~~f~~eLgI~p~~f~e~~YC~~c~~ 328 (397)
T COG2046 298 DAQEIFDEFSPELGITPVFFEEFFYCPKCGQ 328 (397)
T ss_pred cHHHHHHhcccccCcEEEeccceeecccccC
Confidence 9999999997678999999999999999975
No 3
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=100.00 E-value=5.3e-111 Score=891.28 Aligned_cols=337 Identities=31% Similarity=0.510 Sum_probs=323.3
Q ss_pred CcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCeec
Q 014895 65 LIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (416)
Q Consensus 65 ~i~PhGg~Lv~l~v~~~~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~ 144 (416)
+|+||||+|+||+|+++++++++++|++||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 1 ~~~p~gg~l~~~~~~~~~~~~~~~~a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~--~~~~l~~G~~-- 76 (568)
T PRK05537 1 LILPNGGPLPNLYVSPESREKLKAEALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVL--ENMRLADGTL-- 76 (568)
T ss_pred CCCCCCCcchhcccCHHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--
Confidence 479999999999999999999999999999999999999999999999999999999999999999 7999999998
Q ss_pred cceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeE
Q 014895 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (416)
Q Consensus 145 wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i 224 (416)
||+||||+|++|.+++|++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++.+.|+|+|||+|
T Consensus 77 wpiPi~L~v~~~~~~~l~~g~~v~L~~~~g~~~a~l~v~e~~~~dk~~~~~~vfgt~d~~HPgv~~~~~~~g~~~v~G~v 156 (568)
T PRK05537 77 WPIPITLDVSEKFAAGLEIGERIALRDQEGVLLAILTVSDIWEPDKEREAEAVFGTTDPAHPGVNYLHRWAGKFYLGGPL 156 (568)
T ss_pred cceeEEEeCCHHHHhhCCCCCEEEEECCCCcEEEEEEeeeEecCCHHHHHHHHhCCCCcCCccHHHHHhhcCCEEEEeeE
Confidence 79999999999999999999999999989999999999999999999999999999999999999998655999999999
Q ss_pred EEecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC
Q 014895 225 EVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD 304 (416)
Q Consensus 225 ~~l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~d 304 (416)
+++++|.++ +|++||+||+|+|+.|+++||++|||||||||+|||||+|||+|++. . +.++||||++|++|+|
T Consensus 157 ~~~~~~~~~-~f~~~r~tp~e~r~~f~~~gw~~v~afqtrnP~Hr~He~l~~~a~~~---~---d~~lll~p~~G~~k~~ 229 (568)
T PRK05537 157 TGIQLPVHY-DFVQLRLTPAELRARFRKLGWRRVVAFQTRNPLHRAHEELTKRAARE---V---GANLLIHPVVGMTKPG 229 (568)
T ss_pred EEEecCCCC-CchhhcCCHHHHHHHHHHcCCCcEEEEecCCCCcHHHHHHHHHHHHh---c---CCeEEEecCCCCCCCC
Confidence 999988775 69999999999999999999999999999999999999999977542 2 2489999999999999
Q ss_pred CCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCch
Q 014895 305 DVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDH 384 (416)
Q Consensus 305 Dip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~ 384 (416)
|+|+++|||||+++++ + ||+++++|++||++|||||||||+||||+|||||||||||||||||+|+++++.+|||+|+
T Consensus 230 d~~~~~r~~~~~~~~~-~-~p~~~~~l~~~p~~mryaGpreai~hAi~r~N~Gcth~ivGrdhAg~~~~~~~g~~Y~~~~ 307 (568)
T PRK05537 230 DIDHFTRVRCYEALLD-K-YPPATTLLSLLPLAMRMAGPREALWHAIIRRNYGCTHFIVGRDHAGPGKDSRGKPFYGPYD 307 (568)
T ss_pred CCCHHHHHHHHHHHHH-h-CCCCcEEEEeccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCCCcCcccCCchH
Confidence 9999999999999996 5 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCceeEeeeeeeeeeeccCC
Q 014895 385 GKKVLSMALGLEKLNILPFRVGIIVHFNSS 414 (416)
Q Consensus 385 aq~i~~~~~~~~~i~i~p~~~~~Y~~~~~~ 414 (416)
||+||++++++.+|+|++|++++||+.|+.
T Consensus 308 a~~i~~~~~~~l~i~~~~~~~~~Y~~~~~~ 337 (568)
T PRK05537 308 AQELFAKYADEIGITMVPFKEMVYVQDKAQ 337 (568)
T ss_pred HHHHHHhCccccCceEEecceeEEEcCCCe
Confidence 999999998888999999999999999963
No 4
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=100.00 E-value=1.6e-107 Score=821.39 Aligned_cols=306 Identities=42% Similarity=0.702 Sum_probs=291.4
Q ss_pred CCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCC
Q 014895 93 MPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGP 172 (416)
Q Consensus 93 LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~wpiPItL~V~~e~a~~L~~G~~vaL~d~ 172 (416)
||+|+||+++++|||||++|+||||+||||++||+||+ ++|||+||++ ||+||||+|++|++++|++||+|+|+|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~--~~~rL~~G~~--wpiPi~L~v~~e~~~~l~~g~~v~L~~- 75 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVL--EEMRLLDGTL--WPIPIVLDVSEEDAKRLKEGERVALRY- 75 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHH--HhCcCCCCCC--cCeEEEEeCCHHHHhhcCCCCEEEEeE-
Confidence 79999999999999999999999999999999999999 8999999988 899999999999999999999999997
Q ss_pred CCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeEEEecCCCCCCCcccCCCCHHHHHHHHHh
Q 014895 173 TGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDN 252 (416)
Q Consensus 173 eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i~~l~~~~~~~~f~~~r~tP~e~R~~f~~ 252 (416)
+|+++|+|+|+|+|++||++||++||||+|+.||||++++ +.|+|+|||+|++++++.++ +|++||+||+|+|+.|++
T Consensus 76 ~g~~~a~l~v~e~~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~vgG~v~~l~~~~~~-~f~~~r~tP~e~R~~f~~ 153 (353)
T cd00517 76 PGQPLAILTVEEIYEPDKEEEAARVFGTTDPHHPGVKKVM-EQGDWLVGGPIEVLELPPFP-DFDQYRLTPAELRALFKE 153 (353)
T ss_pred CCEEEEEEEeeeEecCCHHHHHHHHhCCCCCCChhHHHHH-hcCCEEEeeEEEEeecCCcC-CchhhcCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999987 57999999999999988876 799999999999999999
Q ss_pred cCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEE
Q 014895 253 RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (416)
Q Consensus 253 rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ 332 (416)
+||++|||||||||+|||||+|+|+|++.+. +++|||||++|+||+||+|+++|+|||+++++ +|+|+++++|+
T Consensus 154 ~gw~~VvafqtrnP~HraHe~l~~~a~~~~~-----~~~lll~plvG~~k~~d~~~~~r~~~~~~l~~-~y~~~~~~~l~ 227 (353)
T cd00517 154 RGWRRVVAFQTRNPMHRAHEELMKRAAEKLL-----NDGLLLHPLVGWTKPGDVPDEVRMRAYEALLE-EYYLPERTVLA 227 (353)
T ss_pred cCCCeEEEeecCCCCchhhHHHHHHHHHHcC-----CCcEEEEeccCCCCCCCCCHHHHHHHHHHHHH-hCCCCCcEEEE
Confidence 9999999999999999999999997755321 37899999999999999999999999999996 79999999999
Q ss_pred eCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeeeecc
Q 014895 333 IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIVHFN 412 (416)
Q Consensus 333 ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~~~~ 412 (416)
++|++|||||||||+||||||||||||||||||||||+|++ .+|||+|+||+||+.++++.+|+|++|++++||++|
T Consensus 228 ~lp~~mryAGPrEallhAiirkN~GcThfIvGrDHAG~g~~---~~yY~~y~aq~i~~~~~~~l~I~~v~~~~~~Yc~~c 304 (353)
T cd00517 228 ILPLPMRYAGPREALWHAIIRKNYGATHFIVGRDHAGVGHP---GDYYGPYDAQEIFKKLAPELGIEPVPFREAAYCPKC 304 (353)
T ss_pred eccchhcccCcHHHHHHHHHHHhCCCCeEEECCCCCCCCCc---cccCCcchhHHHHHhCcccCCceEEecceeEEecCC
Confidence 99999999999999999999999999999999999999965 689999999999999977689999999999999998
Q ss_pred CC
Q 014895 413 SS 414 (416)
Q Consensus 413 ~~ 414 (416)
..
T Consensus 305 ~~ 306 (353)
T cd00517 305 DG 306 (353)
T ss_pred Ce
Confidence 63
No 5
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=100.00 E-value=3.4e-106 Score=819.25 Aligned_cols=335 Identities=36% Similarity=0.609 Sum_probs=320.6
Q ss_pred CCCccccccccCch-hhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCeeccc
Q 014895 68 PDGGVLVDLVVPES-ERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMS 146 (416)
Q Consensus 68 PhGg~Lv~l~v~~~-~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~wp 146 (416)
||||+|++|+|+++ ++++++++|++||+|.||+++++|||||++|+||||+||||++||+||+ ++|||+||++ ||
T Consensus 1 phgg~l~~l~v~~~~~~~~l~~~a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~--~~~rL~~G~~--wp 76 (383)
T TIGR00339 1 PHGGKLVELIVRDPDIEHKLLAEAESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVV--EDMRLSDGVL--FS 76 (383)
T ss_pred CCCCcchhcccCchHHHHHHHHHhccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHH--HhCcCCCCCC--cc
Confidence 89999999999988 6779999999999999999999999999999999999999999999999 7999999998 89
Q ss_pred eeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeEEE
Q 014895 147 LPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEV 226 (416)
Q Consensus 147 iPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i~~ 226 (416)
|||||+|++|++++|++|++|+|+|++|+++|+|+|+|+|++||++||++||||+|++||||++++ +.|+|+|||+|++
T Consensus 77 iPi~L~v~~e~~~~l~~g~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~vfgt~d~~HPgv~~~~-~~g~~~v~G~i~~ 155 (383)
T TIGR00339 77 VPITLDIDDEDADDIKLGDRILLTDDKGQPLAILTIEEVYKPNKTKEAKKVFGTTDPEHPGVVYLN-SAGNYYIGGPIEV 155 (383)
T ss_pred eeEEEeCCHHHHhhCCCCCeEEEECCCCCEEEEEEeeeeecCCHHHHHHHHhCCCCcCCccHHHHH-hcCCEEEEeEEEE
Confidence 999999999999999999999999977999999999999999999999999999999999999987 7999999999999
Q ss_pred ecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 014895 227 LKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (416)
Q Consensus 227 l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDi 306 (416)
++++.| ++|++||+||+|+|+.|+++||++|||||||||+||||++|++.|++.+ + .+++||+|++|++|+||+
T Consensus 156 l~~~~~-~~f~~~r~tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~~a~e~l---~--~d~lll~P~~g~~k~~~~ 229 (383)
T TIGR00339 156 INLPKF-YDFPRFRFTPAELREEFKERGWDTVVAFQTRNPMHRAHEELTKRAARSL---P--NAGVLVHPLVGLTKPGDI 229 (383)
T ss_pred eecCCC-CCchhhcCCHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHHHHHHHc---C--CCeEEEEeCCCCCCCCCC
Confidence 998887 4799999999999999999999999999999999999999998765422 1 378999999999999999
Q ss_pred ChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHH
Q 014895 307 PLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK 386 (416)
Q Consensus 307 p~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq 386 (416)
|+++|++||+++++ +|+++++++++++|++||||||||++||||+|||||||||||||||||+|.++++.+||++|+||
T Consensus 230 ~~~~R~~~~~~~~~-~~~~~~~~~l~~~~~em~~agpreall~Aiir~nyG~th~IiG~Dhag~g~~~~~~~~Y~~~~aq 308 (383)
T TIGR00339 230 PAEVRMRAYEVLKE-GYPNPERVMLTFLPLAMRYAGPREAIWHAIIRKNYGATHFIVGRDHAGPGSNSKGQDFYGPYDAQ 308 (383)
T ss_pred CHHHHHHHHHHHHh-hCCCCCceEEEecchHhhcCCcHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCccccCCCcchHH
Confidence 99999999999995 89989999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceeEeeeeeeeeeeccCC
Q 014895 387 KVLSMALGLEKLNILPFRVGIIVHFNSS 414 (416)
Q Consensus 387 ~i~~~~~~~~~i~i~p~~~~~Y~~~~~~ 414 (416)
+||++++++.+|+|++|++++||++|..
T Consensus 309 ~i~~~~~~~l~I~~v~~~~~~Yc~~c~~ 336 (383)
T TIGR00339 309 ELFEKYKAELGIKIVPFEHVAYCPDEDE 336 (383)
T ss_pred HHHHhCccccCceEEecceeEEEcccCc
Confidence 9999998889999999999999999963
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.8e-76 Score=587.39 Aligned_cols=337 Identities=61% Similarity=1.076 Sum_probs=325.5
Q ss_pred cccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCC-----Ceeccc
Q 014895 72 VLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDG-----SIVNMS 146 (416)
Q Consensus 72 ~Lv~l~v~~~~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG-----~~~~wp 146 (416)
...+++|+++....++++|++||++.|++.|++|++.|++||..||.|||.+.+|.+++||+++ -|| -..++|
T Consensus 231 ~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrereylq~mhf~~l--ld~khaf~g~in~s 308 (627)
T KOG4238|consen 231 DVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREYLQVMHFDTL--LDGKHAFDGVINMS 308 (627)
T ss_pred HHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHHHHHhhhhhh--hccccccccccccc
Confidence 4678999999999999999999999999999999999999999999999999999999998754 555 344799
Q ss_pred eeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeEEE
Q 014895 147 LPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEV 226 (416)
Q Consensus 147 iPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i~~ 226 (416)
|||+|+++.|+..+|..-.+++|. ++|+.+|+|.-.|+|++.|+++|.+.|||++++||.|++++ ++|+|+|||++.+
T Consensus 309 ipivl~~s~e~k~~leg~t~~al~-y~g~~~ail~dpe~fehrkeer~~rq~gt~~~~hp~i~~vm-esg~wl~ggdl~v 386 (627)
T KOG4238|consen 309 IPIVLPVSAEDKTRLEGCTKFALA-YGGRRVAILRDPEFFEHRKEERCSRQWGTTCTKHPHIKMVM-ESGDWLVGGDLQV 386 (627)
T ss_pred ccEEEecchhhhhccchhHHHHhh-cCCEEEEEecChHHhhhhhHHHHHHHhCCCCCCChHHHHHH-hcCCeeeccchhh
Confidence 999999999999999999999998 69999999999999999999999999999999999999987 6999999999999
Q ss_pred ecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 014895 227 LKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (416)
Q Consensus 227 l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDi 306 (416)
++.+.|+|++++||+||.|+|+.|++++.++|+|||.|||+|.||..||++|.+.++|.|+++++|||||++||||.||+
T Consensus 387 l~ki~~ndgldqyr~tp~elk~~f~e~nadavfafqlrnpvhnghallm~dt~~~ll~~g~k~pvlllhplggwtkdddv 466 (627)
T KOG4238|consen 387 LEKIRWNDGLDQYRLTPLELKQKFKEMNADAVFAFQLRNPVHNGHALLMQDTRRRLLERGYKHPVLLLHPLGGWTKDDDV 466 (627)
T ss_pred heeeeeccchhhhcCCHHHHHHHHHhhCcceEEEeeecCccccchhhHhHhHHHHHHHhcccCceEEEecCCCCccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHH
Q 014895 307 PLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGK 386 (416)
Q Consensus 307 p~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq 386 (416)
|.+.||+++.++++++.+.|+.++++|||++|.||||.|..|||-.|.-.|++|+|||||+||+.+|..+.|.|.|.++.
T Consensus 467 pl~~rmkqh~avl~e~vldpe~tvvaifpspmmyagptevqwh~rsrm~ag~~~yivgrdpagm~~pe~~~dlye~thga 546 (627)
T KOG4238|consen 467 PLDWRMKQHAAVLEEGVLDPESTVVAIFPSPMMYAGPTEVQWHCRSRMIAGANFYIVGRDPAGMPHPETKKDLYEPTHGA 546 (627)
T ss_pred cchhhhHHHHHHHHhccCCccceEEEEcCCchhcCCchhhhhhHHHHhhccCeeEEeccCcCCCCCCCCCccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceeEeeeeeeeeeecc
Q 014895 387 KVLSMALGLEKLNILPFRVGIIVHFN 412 (416)
Q Consensus 387 ~i~~~~~~~~~i~i~p~~~~~Y~~~~ 412 (416)
+++++.||+..++|+||++++|++..
T Consensus 547 kvlsmapgl~~l~i~pfrvaay~k~~ 572 (627)
T KOG4238|consen 547 KVLSMAPGLTSLEIIPFRVAAYNKAK 572 (627)
T ss_pred eeeeecCCcceeeeeeeehhhhhhhh
Confidence 99999999999999999999999864
No 7
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=100.00 E-value=1.9e-65 Score=485.62 Aligned_cols=166 Identities=36% Similarity=0.616 Sum_probs=141.5
Q ss_pred cccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHH
Q 014895 236 LDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQH 315 (416)
Q Consensus 236 f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y 315 (416)
|+++|+||+|+|+.|+++||++|||||||||+|||||+|++.|++.+ + ++|||||++|++|+||+|+++|++||
T Consensus 1 f~~~r~tP~e~r~~~~~~gw~~VvafqtrnPlHraHe~l~~~a~e~~---~---~~lll~plvG~~k~~d~~~~~r~~~~ 74 (215)
T PF01747_consen 1 FRRYRLTPAETRELFKEKGWRRVVAFQTRNPLHRAHEYLMRRALEKA---G---DGLLLHPLVGPTKPGDIPYEVRVRCY 74 (215)
T ss_dssp TCCTB--HHHHHHHHHHTT-SSEEEEEESS---HHHHHHHHHHHHHH---T---SEEEEEEBESB-STTSCCHHHHHHHH
T ss_pred CcchhCCHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHh---c---CcEEEEeccCCCCcCCCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999876543 2 79999999999999999999999999
Q ss_pred HHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCC
Q 014895 316 SKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGL 395 (416)
Q Consensus 316 ~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~ 395 (416)
+++++ +|||+++++|+++|++|||||||||+||||||||||||||||||||||+| +|||+|+||+||++++++
T Consensus 75 ~~~~~-~y~p~~~v~l~~lp~~mr~aGPrEallhAiirkN~GcTh~IvGrdhAg~g------~~Y~~~~a~~i~~~~~~e 147 (215)
T PF01747_consen 75 EALID-NYFPKNRVLLSPLPLPMRYAGPREALLHAIIRKNYGCTHFIVGRDHAGVG------DFYDPYEAQEIFDEYAGE 147 (215)
T ss_dssp HHHHH-HCSSTTGEEEEBBESB---SHHHHHHHHHHHHHHTT-SEEEE-TTTT-SC------BSS-TTHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCcEEEeccCchhcccCcHHHHHHHHHHHHCCCceEEeCCcCCCcc------ccCCccHHHHHHHcCccc
Confidence 99996 59999999999999999999999999999999999999999999999999 799999999999999888
Q ss_pred CceeEeeeeeeeeeeccCC
Q 014895 396 EKLNILPFRVGIIVHFNSS 414 (416)
Q Consensus 396 ~~i~i~p~~~~~Y~~~~~~ 414 (416)
.||+|++|++++||++|+.
T Consensus 148 l~I~~v~~~~~~Yc~~~~~ 166 (215)
T PF01747_consen 148 LGIEPVPFPEMVYCPKCGQ 166 (215)
T ss_dssp CTSEEEE---EEEETTTTE
T ss_pred CCceEEecceEEEEcCCCe
Confidence 8999999999999999874
No 8
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-57 Score=448.98 Aligned_cols=355 Identities=45% Similarity=0.626 Sum_probs=342.1
Q ss_pred cccccCCCcCCCCccccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceec
Q 014895 58 SSAIKSSLIEPDGGVLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRM 137 (416)
Q Consensus 58 ~~~~~~~~i~PhGg~Lv~l~v~~~~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL 137 (416)
.+.+.+++|.|.||+|++++|++-++...+++++++|.|.|+..|++|...+.+||.|||.|||.+.++.+.+||+..||
T Consensus 42 ~lsv~s~li~Pdgg~l~el~v~e~k~~~kkae~~d~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l 121 (466)
T KOG0636|consen 42 RLSVKSGLIIPDGGKLVELFVNEIKRRVKKAEAEDDPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRL 121 (466)
T ss_pred eeeccceeeccCCchHHHhhccccchhhhhhhhccCCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHH-HHHHHhhCCCCCCCcchhhhcccCC
Q 014895 138 KDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKE-ERIARTWGTTAAGLPYVEEVITPAG 216 (416)
Q Consensus 138 ~dG~~~~wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~-~ea~~VfGT~d~~HPgV~~~~~~~g 216 (416)
.||.+.++++||+|+++++++..+....+|.|++.+|.++|++.-.++|.+.++ ++|++.+||+-+-||.|.......+
T Consensus 122 ~~GS~vnmslPivlaidd~~K~~ig~s~~v~l~~~d~~~i~~lrn~~~~aH~e~t~R~Art~gatv~~~P~V~~t~~~~~ 201 (466)
T KOG0636|consen 122 VDGSVVNMSLPIVLAIDDDQKTPIGLSLEVQLVQSDGNPIAILRNPMHRAHRELTVRAARTWGATVLIHPVVGETKPGDI 201 (466)
T ss_pred cCceEEEeeccEEEecCcccccccccceeEEEecCCCCeeeeecCHHhhhchHHHHHHHHHhCCccccccccceecCCCC
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999998877899
Q ss_pred cEEEEeeEEEecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcc
Q 014895 217 NWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP 296 (416)
Q Consensus 217 ~~~vgG~i~~l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~P 296 (416)
+|.++|+++++.+.+|+++.+.+++.|.++|.++.+++...+++||.|||.|.+|-.++..+.+..++++|+++.+++||
T Consensus 202 d~l~~~~v~v~~~~rY~dGl~~~~L~P~amR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~ 281 (466)
T KOG0636|consen 202 DHLTRVRVYVLIPIRYPDGLARLSLLPLAMRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHL 281 (466)
T ss_pred cceeeeEEEEEEeeecCCchhhhcCChHHHhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999888888999999999999999
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCC-hhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCC
Q 014895 297 LGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPAGMGHPTE 375 (416)
Q Consensus 297 lvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAG-PREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~ 375 (416)
+.|-||.+|||-..||+.++...++ .|.|.+++.+++|.+|.||| |.|..||+-.|-|-|++..|||||.||+|+|..
T Consensus 282 v~gytke~dipl~~~m~q~~~~~ED-v~dP~~tv~si~~~~l~~sGt~~~~r~~v~arI~e~~sy~~V~r~~~~~g~P~~ 360 (466)
T KOG0636|consen 282 VEGYTKEDDIPLVPFMMQTYLPDED-VYDPEDTVVSIFTRTLNISGTELRRRLRVGARIPEWFSYPEVVRILRGSGPPTE 360 (466)
T ss_pred hhhcccccCCcccHHHhhhccchhh-hcCccceeeeccccceeecCCcceeeeeeccccCcccccceeeechhhcCCCcc
Confidence 9999999999999999999988876 88889999999999999999 999999999999999999999999999999999
Q ss_pred CCCCCCCchH--HHHHHhhcCCCceeEeeeeeeeeeeccC
Q 014895 376 KRDLYDPDHG--KKVLSMALGLEKLNILPFRVGIIVHFNS 413 (416)
Q Consensus 376 ~~~~Y~~~~a--q~i~~~~~~~~~i~i~p~~~~~Y~~~~~ 413 (416)
+++||++.+. .+++++.++.+-+.|.||+.++|.+-.+
T Consensus 361 kq~~~~a~~g~~k~vLsmAp~le~Lni~~~R~aa~~~~~~ 400 (466)
T KOG0636|consen 361 KQGFYDADHGATKKVLSMAPLLERLNILGFRVAAYDKTQG 400 (466)
T ss_pred cCCceecCCccchheeccchhhHHhccCCeeEEEEeccCC
Confidence 9999999997 8899999999999999999999998654
No 9
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=100.00 E-value=1.9e-54 Score=394.03 Aligned_cols=159 Identities=40% Similarity=0.693 Sum_probs=139.7
Q ss_pred cCCCCc-cccccccCchhhhhHHHHhcCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCeec
Q 014895 66 IEPDGG-VLVDLVVPESERGLRTTEAESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVN 144 (416)
Q Consensus 66 i~PhGg-~Lv~l~v~~~~~~~l~~~a~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~ 144 (416)
|.|||| +||+|+++++++++++++|++||+|.||+++++|||||++|+||||+|||+++||+||+ ++|||+||++
T Consensus 1 i~PhGG~~Lv~~~~~~~~~~~~~~~a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~--~~~rL~~G~~-- 76 (160)
T PF14306_consen 1 IEPHGGKKLVNLVVPEDEREELKEEAESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVL--ETMRLPDGTL-- 76 (160)
T ss_dssp ---TTSSS--BHBHHTGGHHHHHHHHTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHH--HHSBETTSSB--
T ss_pred CcCCCCCcccccccCHHHHHHHHHHHhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHH--hhCCcCCCCE--
Confidence 689999 99999999999999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeE
Q 014895 145 MSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDL 224 (416)
Q Consensus 145 wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i 224 (416)
|||||||+|++|+++++++|++|+|++++|+++|+|+|+|+|++||++||++||||+|++||||++++ ++|+|+|||+|
T Consensus 77 wpiPI~L~v~~e~~~~l~~G~~v~L~~~~G~~~a~l~V~evy~~dk~~ea~~vfgT~d~~HPgV~~~~-~~g~~~vgG~i 155 (160)
T PF14306_consen 77 WPIPIVLDVSEEEAKSLKEGDKVALRDPEGKPVAILEVEEVYEPDKEEEAEKVFGTTDPAHPGVAKLY-ERGDYYVGGKI 155 (160)
T ss_dssp --S---EEECHHHHTTCTTTSEEEEEETTTEEEEEEEEEEEEEECHHHHHHHHHSS-TTTSHHHHHHH-TS-SEEEEEEE
T ss_pred EeEEEEEECCHHHHHhccCCCEEEEECCCCCEEEEEEeCeeecCCHHHHHHHhhCCCCCCChHHHHHH-hcCCEEEeeEE
Confidence 89999999999999999999999999988999999999999999999999999999999999999998 79999999999
Q ss_pred EEecC
Q 014895 225 EVLKP 229 (416)
Q Consensus 225 ~~l~~ 229 (416)
+++++
T Consensus 156 ~~l~~ 160 (160)
T PF14306_consen 156 EVLNR 160 (160)
T ss_dssp EESS-
T ss_pred EEEeC
Confidence 99863
No 10
>KOG0636 consensus ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-47 Score=375.58 Aligned_cols=295 Identities=24% Similarity=0.274 Sum_probs=271.9
Q ss_pred CccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEE
Q 014895 99 TKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIG 178 (416)
Q Consensus 99 ~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vA 178 (416)
++.++|+++++.+ +||++||+++.+|.+|+ -||++|+. |.+|+++++.+-.+...+.+.+.++- .+...++
T Consensus 11 tp~~~~~l~~~l~--~~~~~~~l~~~~~s~~~----~~lsv~s~--li~Pdgg~l~el~v~e~k~~~kkae~-~d~p~i~ 81 (466)
T KOG0636|consen 11 TPFQSCPLELILN--SSPLTGFLSENSYSSVV----RRLSVKSG--LIIPDGGKLVELFVNEIKRRVKKAEA-EDDPRIK 81 (466)
T ss_pred CccccCchhhhcc--CCCCcceeccccchhhe----eeeeccce--eeccCCchHHHhhccccchhhhhhhh-ccCCcee
Confidence 8899999999999 99999999999999997 57899998 79999999999888889999999986 4667999
Q ss_pred EEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeEEEec-CCCCCCCcccCCCCHHHHHHHHHhcCCCe
Q 014895 179 ILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLK-PIKYNDGLDHYRLSPQQLRKEFDNRQADA 257 (416)
Q Consensus 179 iL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i~~l~-~~~~~~~f~~~r~tP~e~R~~f~~rgw~~ 257 (416)
+.+|+..|.+.+.++++.+|+ .++.||..-+++.=.+.++++|.++-++ |+.+ +++..+.+|.+.+.+++-..|+.
T Consensus 82 l~~vdl~w~hv~segwasplr-Gfmre~e~lqtlhfn~~~l~~GS~vnmslPivl--aidd~~K~~ig~s~~v~l~~~d~ 158 (466)
T KOG0636|consen 82 LNTVDLEWVHVLSEGWASPLR-GFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVL--AIDDDQKTPIGLSLEVQLVQSDG 158 (466)
T ss_pred eeeeeeEEeeecchhhhcccc-CcccchhHHhheeccceeecCceEEEeeccEEE--ecCcccccccccceeEEEecCCC
Confidence 999999999999999999997 4688999988887789999999999999 6666 68899999999999999999999
Q ss_pred EEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCC
Q 014895 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSP 337 (416)
Q Consensus 258 VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~ 337 (416)
+++||+|||+||+|.++.. ++|.+.| +-.++||+||++|++|+++.+|++.|+.... .||.+-..++++|++
T Consensus 159 ~~i~~lrn~~~~aH~e~t~---R~Art~g---atv~~~P~V~~t~~~~~d~l~~~~v~v~~~~--rY~dGl~~~~L~P~a 230 (466)
T KOG0636|consen 159 NPIAILRNPMHRAHRELTV---RAARTWG---ATVLIHPVVGETKPGDIDHLTRVRVYVLIPI--RYPDGLARLSLLPLA 230 (466)
T ss_pred CeeeeecCHHhhhchHHHH---HHHHHhC---CccccccccceecCCCCcceeeeEEEEEEee--ecCCchhhhcCChHH
Confidence 9999999999999999943 4566776 7799999999999999999999999987775 678888899999999
Q ss_pred cCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeeeeccC
Q 014895 338 MHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIVHFNS 413 (416)
Q Consensus 338 mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~~~~~ 413 (416)
||++|+|||+||||+|||||+.|||+||||||+|..+.+.+||+||+||.++..|..+.+|.++||.++.|....|
T Consensus 231 mR~e~~r~~a~~a~~~k~~~~~H~~~~~~~a~~~k~~l~m~f~~P~~~~~~v~gytke~dipl~~~m~q~~~~~ED 306 (466)
T KOG0636|consen 231 MRMEGDREAAWHAIIRKNYGASHFIHGRDHAGPGKNSLGMDFYGPYDAQHLVEGYTKEDDIPLVPFMMQTYLPDED 306 (466)
T ss_pred HhhhcchhhhHHHHHHHhcCcchhceeecccCcccccccccccChHHhhhhhhhcccccCCcccHHHhhhccchhh
Confidence 9999999999999999999999999999999999999999999999999999999778899999999999876654
No 11
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=98.58 E-value=5.3e-07 Score=77.59 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=68.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCC----CCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCc
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK----ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK----~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~m 338 (416)
+-||+|+||.+|++.|.+.+ .+.+++.|.....+ ...++.+.|++..+++.+ + - ..++++.+
T Consensus 7 ~Fdp~H~GH~~ll~~a~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~-~---~----~~v~~~~~ 72 (143)
T cd02039 7 RFEPFHLGHLKLIKEALEEA------LDEVIIIIVSNPPKKKRNKDPFSLHERVEMLKEILK-D---R----LKVVPVDF 72 (143)
T ss_pred ccCCcCHHHHHHHHHHHHHc------CCceEEEEcCCChhhcccccCCCHHHHHHHHHHhcc-C---C----cEEEEEec
Confidence 89999999999998765432 14566667666554 378999999999987763 1 1 12345555
Q ss_pred CCCChhHHH-HHHHHHHhcCCcEEEecCCCCCC
Q 014895 339 HYAGPTEVQ-WHAKARINAGANFYIVGRDPAGM 370 (416)
Q Consensus 339 ryAGPREAl-lHAiiRkNyGcTHfIVGRDHAGv 370 (416)
.+..+..+. +...+.++++|+++++|.|+..-
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~~ 105 (143)
T cd02039 73 PEVKILLAVVFILKILLKVGPDKVVVGEDFAFG 105 (143)
T ss_pred ChhhccCHHHHHHHHHHHcCCcEEEECCccccC
Confidence 555566665 77778889999999999998854
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=97.86 E-value=9.2e-05 Score=74.25 Aligned_cols=138 Identities=15% Similarity=0.087 Sum_probs=87.3
Q ss_pred hhcccCCcEEE---EeeEEEecCCCCCCCcccCCCCHHHHHH-HHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHc
Q 014895 210 EVITPAGNWLV---GGDLEVLKPIKYNDGLDHYRLSPQQLRK-EFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEM 285 (416)
Q Consensus 210 ~~~~~~g~~~v---gG~i~~l~~~~~~~~f~~~r~tP~e~R~-~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~ 285 (416)
.+|.+.|=..+ +|+... +..+.+..+-+..|..+ ....+....|++ +.||+|+||+.++++|++.+ +.
T Consensus 72 ~fYek~GF~~~~~~~~~~~~-----~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~--~FDPiH~GHl~ii~~a~~~~-d~ 143 (297)
T cd02169 72 KFFRGLGFKELANASDEAVL-----LENGKPGIEDYLKNLPKPDQPGKKIAAIVM--NANPFTLGHRYLVEKAAAEN-DW 143 (297)
T ss_pred HHHHHCCCEEecccCCeeeE-----ecCCchHHHHHHHHHHhhccCCCceEEEEe--cCCCCchHHHHHHHHHHhhC-Ce
Confidence 45555663333 354444 33455666666777766 455566677888 99999999999998765421 11
Q ss_pred CCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCC--------------------ChhH
Q 014895 286 GYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA--------------------GPTE 345 (416)
Q Consensus 286 ~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryA--------------------GPRE 345 (416)
+.+++-|- +...+|.+.|++..+..+++ +| .-.+++.-.+..-|+ .|.+
T Consensus 144 ----~~V~i~~~----~~~~~~~e~R~~ml~~ai~~--~~-~v~v~~~~~l~v~~~~~~~~~~~~~~~~~~~~a~lsa~~ 212 (297)
T cd02169 144 ----VHLFVVSE----DKSLFSFADRFKLVKKGTKH--LK-NVTVHSGGDYIISSATFPSYFIKEQDVVIKAQTALDARI 212 (297)
T ss_pred ----EEEEEEcC----CCCCCCHHHHHHHHHHHhCC--CC-CEEEEecCCeeeccccChhhhcCChhHHHHHHhcCCHHH
Confidence 33444342 56789999999999999863 33 222222222221111 3444
Q ss_pred HHHHHHHHHhcCCcEEEecCCCC
Q 014895 346 VQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 346 AllHAiiRkNyGcTHfIVGRDHA 368 (416)
-.+ ++.+-++|.+++||-|+.
T Consensus 213 -Fi~-iL~~~l~~~~ivvG~Df~ 233 (297)
T cd02169 213 -FRK-YIAPALNITKRYVGEEPF 233 (297)
T ss_pred -HHH-HHHHHcCCcEEEEcCCCC
Confidence 347 888899999999999963
No 13
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=96.77 E-value=0.0099 Score=55.74 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=74.8
Q ss_pred CeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceE----E
Q 014895 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTI----V 331 (416)
Q Consensus 256 ~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~----l 331 (416)
.+||. +.||+|+||..+++.+.+.+ . .+.+++-|- +..-++.+.|++-.+..+++ .|.=.++ +
T Consensus 2 ~~~~~--~~DPiH~GHl~i~~~a~~~~-d----~~~V~v~p~----~~~~~s~e~R~~Mi~~a~~~--~~~v~v~~~~~~ 68 (182)
T smart00764 2 AAIVM--NANPFTLGHRYLVEQAAAEC-D----WVHLFVVSE----DASLFSFDERFALVKKGTKD--LDNVTVHSGSDY 68 (182)
T ss_pred ceEEE--CCCCCCHHHHHHHHHHHHHC-C----ceEEEEEeC----CCCCCCHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 46788 99999999999988665421 1 133444343 56688999999999998863 2210100 1
Q ss_pred EeCC--CCcCC-----------C--ChhHHHHHHHHHHhcCCcEEEecCCCC-CCCCCCCCCCCCCCchHHHHHHhhcCC
Q 014895 332 SIFP--SPMHY-----------A--GPTEVQWHAKARINAGANFYIVGRDPA-GMGHPTEKRDLYDPDHGKKVLSMALGL 395 (416)
Q Consensus 332 ~ilP--~~mry-----------A--GPREAllHAiiRkNyGcTHfIVGRDHA-GvG~~~~~~~~Y~~~~aq~i~~~~~~~ 395 (416)
.+.| .+-.| | .|.+=+ + ++.+.+++.|++||.|+. |-+ ...+ .+.+..+. .
T Consensus 69 ~v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi-~-~L~~~l~~~~ivvG~df~FG~~---------~~G~-~~~L~~~~-~ 135 (182)
T smart00764 69 IISRATFPSYFLKEQDVVIKSQTTLDLRIFR-K-YIAPALGITHRYVGEEPFSPVT---------AIYN-QTMKQTLL-S 135 (182)
T ss_pred eeccccChhhhcCchhHHHHHHhcCCHHHHH-H-HHHHHcCceEEEEcCCCCCCCC---------CccC-HHHHHHHh-h
Confidence 2333 22233 2 444433 5 578889999999999853 222 1111 23444442 3
Q ss_pred CceeEeeeeee
Q 014895 396 EKLNILPFRVG 406 (416)
Q Consensus 396 ~~i~i~p~~~~ 406 (416)
.++++.+.+..
T Consensus 136 ~g~~v~~I~r~ 146 (182)
T smart00764 136 PAIEVVEIERK 146 (182)
T ss_pred CCCEEEEEecc
Confidence 46777666553
No 14
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=95.23 E-value=0.21 Score=46.23 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=61.4
Q ss_pred EEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccC----CCC--CCCCChHHHHHHHHHHHHcCcCCCCceEE
Q 014895 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG----FTK--ADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (416)
Q Consensus 258 VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG----~tK--~dDip~~vR~r~y~~~l~~~y~p~~~~~l 331 (416)
|+++=+-+|+|+||..|++.|.+.|.+.+.....+...|... ..+ .--.+.+.|++-.+.+ + + +. ++
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l---~-v--d~-v~ 74 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL---G-V--DY-LL 74 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc---C-C--CE-EE
Confidence 455558999999999999988776654432222333334321 112 2346788898866542 1 2 32 33
Q ss_pred EeCCCCcCCCC-hhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 332 SIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 332 ~ilP~~mryAG-PREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
++|....++. +-|..+..++-+. ++.+++||.|+.
T Consensus 75 -~~~f~~~~~~~s~~~Fi~~il~~~-~~~~ivvG~Df~ 110 (180)
T cd02064 75 -VLPFDKEFASLSAEEFVEDLLVKL-NAKHVVVGFDFR 110 (180)
T ss_pred -EeCCCHHHHcCCHHHHHHHHHhhc-CCeEEEEccCCC
Confidence 5576544442 2344555555444 999999999986
No 15
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=94.84 E-value=0.26 Score=44.64 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=52.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAG 342 (416)
|-||+|.||..+.+.|.+ .. +-+++-|..-..|..-++.+.|++-.+.++++ .| .+. +.+..
T Consensus 7 sFdP~H~GHl~l~~~a~~----~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~~--~~--~~~--v~~~e----- 68 (153)
T cd02163 7 SFDPITNGHLDIIERASK----LF---DEVIVAVAVNPSKKPLFSLEERVELIREATKH--LP--NVE--VDGFD----- 68 (153)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEEcCCCCCCCCCCHHHHHHHHHHHHcC--CC--CEE--ecCCc-----
Confidence 789999999999876543 32 44444455444466679999999999987752 32 222 33321
Q ss_pred hhHHHHHHHHHHhcCCcEEEecCC
Q 014895 343 PTEVQWHAKARINAGANFYIVGRD 366 (416)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRD 366 (416)
. +-.-.-+-+++.+||+|-|
T Consensus 69 ---s-~t~~~l~~l~~~~~i~G~d 88 (153)
T cd02163 69 ---G-LLVDFARKHGANVIVRGLR 88 (153)
T ss_pred ---c-hHHHHHHHcCCCEEEECCc
Confidence 1 1112235779999999966
No 16
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=94.76 E-value=0.14 Score=47.56 Aligned_cols=110 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C-CCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t-K-~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mry 340 (416)
|-||+|.||..+++.|.+.+ + .+-+++-|-.... | ....+.+.|++-.+.+++ .. ++ +.+-+...+-
T Consensus 7 sFdP~H~GH~~~~~~a~~~~---~--~d~v~~~~~~~~~~k~~~~~~~~~R~~m~~~~~~--~~-~~---i~v~~~e~~~ 75 (192)
T cd02165 7 SFDPPHLGHLAIAEEALEEL---G--LDRVLLLPSANPPHKPPKPASFEHRLEMLKLAIE--DN-PK---FEVSDIEIKR 75 (192)
T ss_pred CCCCCCHHHHHHHHHHHHHc---C--CCEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHc--CC-CC---EEEeHHHHhC
Confidence 78999999999987664422 1 1334444543332 2 378999999999998885 22 22 4455666666
Q ss_pred CChhHHH--HHHHHHHhcC-Cc-EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 341 AGPTEVQ--WHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 341 AGPREAl--lHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
.||.-.+ +..+ ++.|+ +. .||+|-|-.-=- ..+|+ +++|++.+
T Consensus 76 ~~~~~t~~tl~~l-~~~~p~~~~~~liG~D~l~~~-----~~W~~---~~~i~~~~ 122 (192)
T cd02165 76 DGPSYTIDTLEEL-RERYPNAELYFIIGSDNLIRL-----PKWYD---WEELLSLV 122 (192)
T ss_pred CCCCCHHHHHHHH-HHhccCCCEEEEEcHHHhhhc-----ccccC---HHHHHHhC
Confidence 6665543 3333 44464 55 678898753221 13443 37777653
No 17
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=94.40 E-value=0.32 Score=47.17 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=64.9
Q ss_pred eEEEee--cCCCCchhHHHHHHHHHHHHHHcC-CCCCeEEEccc-cCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEE
Q 014895 257 AIFAFQ--LRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPL-GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVS 332 (416)
Q Consensus 257 ~VvaFQ--TRNPlHRaHE~l~r~a~~~ale~~-~~~~~lLl~Pl-vG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ 332 (416)
++|++. |-||+|.||..+.+.|.+. +++. +.....++.|. ....|++-.+.+.|++-.+..+++ .| -+.
T Consensus 22 ~~v~i~GGSFdP~H~gHl~ia~~a~~~-l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~----~~~ 94 (236)
T PLN02945 22 RVVLVATGSFNPPTYMHLRMFELARDA-LMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED--SD----FIM 94 (236)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHH-HhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--CC----CeE
Confidence 455554 7999999999998876553 3331 11112356665 233466789999999988877752 22 155
Q ss_pred eCCCCcCCCChhHHHHH-HHHHHhcC---------Cc-EEEecCCC
Q 014895 333 IFPSPMHYAGPTEVQWH-AKARINAG---------AN-FYIVGRDP 367 (416)
Q Consensus 333 ilP~~mryAGPREAllH-AiiRkNyG---------cT-HfIVGRDH 367 (416)
+-++...-.||.-.+-. ..+++-|+ +. -||+|-|-
T Consensus 95 V~~~E~~~~~~syT~dtL~~l~~~~~~~~~~~~~~~~~~fiiG~D~ 140 (236)
T PLN02945 95 VDPWEARQSTYQRTLTVLARVETSLNNNGLASEESVRVMLLCGSDL 140 (236)
T ss_pred ecHHHhCCCCCccHHHHHHHHHHHhccccccCCCCceEEEEechhH
Confidence 67777777777533322 23566563 22 48889884
No 18
>PRK13670 hypothetical protein; Provisional
Probab=94.32 E-value=0.19 Score=52.46 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=58.0
Q ss_pred EEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccc--cCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCC
Q 014895 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (416)
Q Consensus 258 VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Pl--vG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP 335 (416)
|+| =-||+|+||.++++.+.+.+-+ +. ...++ |- +....+--++-+.|.+... ..| -| .++ .+|
T Consensus 6 IIa--Efdg~H~GH~~~i~~a~~~a~~-~~--~~~Vm-p~~f~qrg~p~i~~~~~R~~~a~---~~G---vD-~vi-elp 71 (388)
T PRK13670 6 IIV--EYNPFHNGHLYHLNQAKKLTNA-DV--TIAVM-SGNFVQRGEPAIVDKWTRAKMAL---ENG---VD-LVV-ELP 71 (388)
T ss_pred EEe--eeCCcCHHHHHHHHHHHHHHhC-CC--cEEEe-cHHHhCCCCCCCCCHHHHHHHHH---HcC---CC-EEE-EeC
Confidence 455 5799999999999887665443 31 12222 32 2111233667788877433 322 34 344 678
Q ss_pred CCcCCCChhHHHHHH--HHHHhcCCcEEEecCCCCC
Q 014895 336 SPMHYAGPTEVQWHA--KARINAGANFYIVGRDPAG 369 (416)
Q Consensus 336 ~~mryAGPREAllHA--iiRkNyGcTHfIVGRDHAG 369 (416)
..+--..|.+=+-.| ++ +.+||+|+++|-|..+
T Consensus 72 f~~a~~sae~F~~~aV~iL-~~l~v~~lv~G~e~g~ 106 (388)
T PRK13670 72 FLYSVQSADFFAEGAVSIL-DALGVDSLVFGSESGD 106 (388)
T ss_pred CchHhCCHHHHHHhHHHHH-HHcCCCEEEEcCCCCC
Confidence 773333443333332 77 8899999999999444
No 19
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=93.64 E-value=0.75 Score=42.16 Aligned_cols=91 Identities=15% Similarity=0.142 Sum_probs=55.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~-PlvG--~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-||+|.||..+++.|.+ .. +-+++- |-.. .++..-++.+.|++-.+..+.+.-++.+++.+ .|..=.
T Consensus 7 ~FdP~H~GHl~~i~~a~~----~~---d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v--~~~~d~ 77 (163)
T cd02166 7 RFQPFHLGHLKVIKWILE----EV---DELIIGIGSAQESHTLENPFTAGERVLMIRRALEEEGIDLSRYYI--IPVPDI 77 (163)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCcCeEEE--EecCCC
Confidence 678999999999876543 32 334431 1111 12334578899999999777533244445444 554322
Q ss_pred CCChhHHHHHHHHHHhcC-CcEEEecC
Q 014895 340 YAGPTEVQWHAKARINAG-ANFYIVGR 365 (416)
Q Consensus 340 yAGPREAllHAiiRkNyG-cTHfIVGR 365 (416)
+ .+..|-+-+++... ++-+++|+
T Consensus 78 ~---~~~~w~~~v~~~vp~~div~~g~ 101 (163)
T cd02166 78 E---RNSLWVSYVESLTPPFDVVYSGN 101 (163)
T ss_pred C---chHHHHHHHHHHCCCCCEEEECc
Confidence 2 45688888876665 45566664
No 20
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=93.43 E-value=0.58 Score=43.84 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=50.0
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcc-c--cCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP-L--GGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~P-l--vG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-||+|.||..+++.|.+ .. +-+.|-+ - .-.++..-++.+.|++-.+..+.+.=++.+++. +.|.+=.
T Consensus 7 rF~P~H~GHl~~i~~a~~----~~---~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~--i~pi~D~ 77 (181)
T cd02168 7 RFQPFHNGHLAVVLIALE----KA---KKVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVH--FRPLRDH 77 (181)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEE--EEecCCC
Confidence 678999999999876543 22 2233311 1 123556778999999999987764333445544 5554322
Q ss_pred CCChhHHHHHHHHHH
Q 014895 340 YAGPTEVQWHAKARI 354 (416)
Q Consensus 340 yAGPREAllHAiiRk 354 (416)
. ..+..|-+-+++
T Consensus 78 -~-~~~~~W~~~v~~ 90 (181)
T cd02168 78 -L-YSDNLWLAEVQQ 90 (181)
T ss_pred -C-CChHHHHHHHHH
Confidence 0 357788866653
No 21
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=93.06 E-value=0.31 Score=44.59 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=73.0
Q ss_pred CeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccc----cC--CCCCCCCChHHHHHHHHHHHHcCcCCCCce
Q 014895 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL----GG--FTKADDVPLDVRMEQHSKVLEDGVLDPETT 329 (416)
Q Consensus 256 ~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Pl----vG--~tK~dDip~~vR~r~y~~~l~~~y~p~~~~ 329 (416)
.++++.=.-+=+|+||..|++.+.+.|.+.+.+-.++...|- .. ....--.+.+-|.+.++.+ --+.+
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~------Gvd~~ 79 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL------GVDYV 79 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT------TESEE
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc------CCCEE
Confidence 356666688899999999999998888776533334444442 11 2222346777787766543 12332
Q ss_pred EEEeCCCCcCCC-ChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeee
Q 014895 330 IVSIFPSPMHYA-GPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVG 406 (416)
Q Consensus 330 ~l~ilP~~mryA-GPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~ 406 (416)
+ ++|.+..++ =.-|.-++-++.++++|.+++||-|+. -| +=...+++.+- ++..+.|+++...+..
T Consensus 80 -~-~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~Dfr-FG-------~~~~G~~~~L~-~~~~~~g~~v~~v~~~ 146 (157)
T PF06574_consen 80 -I-VIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFR-FG-------KNRSGDVELLK-ELGKEYGFEVEVVPPV 146 (157)
T ss_dssp -E-EE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-E-ES-------GGGEEEHHHHH-HCTTTT-SEEEEE---
T ss_pred -E-EecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCcc-CC-------CCCCCCHHHHH-HhcccCceEEEEECCE
Confidence 3 567554333 234778888899999999999999952 33 11233444443 4433455666555443
No 22
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=92.72 E-value=2.2 Score=43.02 Aligned_cols=98 Identities=20% Similarity=0.258 Sum_probs=61.4
Q ss_pred ecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEE--ccc--cCC-CCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCC
Q 014895 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL--HPL--GGF-TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPS 336 (416)
Q Consensus 262 QTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl--~Pl--vG~-tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~ 336 (416)
=.-+-+|+||..|++.+.+.|.+.+.+..++-. ||. ..+ ..+--.+.+.|.+-++.+ -=+ .++ ++|.
T Consensus 5 G~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~------Gvd-~~~-~~~F 76 (288)
T TIGR00083 5 GYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK------GVE-QLL-VVVF 76 (288)
T ss_pred EeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc------CCC-EEE-EeCC
Confidence 367899999999999988877776544333333 332 111 112244567776654432 123 233 6776
Q ss_pred CcCCC--ChhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 337 PMHYA--GPTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 337 ~mryA--GPREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
...+| .| |.-..-++.+.+++.+++||-|+.
T Consensus 77 ~~~~a~ls~-e~Fi~~~l~~~l~~~~ivvG~Df~ 109 (288)
T TIGR00083 77 DEEFANLSA-LQFIDQLIVKHLHVKFLVVGDDFR 109 (288)
T ss_pred CHHHHcCCH-HHHHHHHHHhccCCcEEEECCCcc
Confidence 54443 44 555566777889999999999975
No 23
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=92.66 E-value=2 Score=39.28 Aligned_cols=84 Identities=19% Similarity=0.228 Sum_probs=53.1
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC---CCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT---KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t---K~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-||+|.||..+++.|++ .. +-++|-|-.-.. +..-++.+.|++-.+..+.+ . .++.+..++.+..
T Consensus 7 ~F~P~H~GHl~li~~a~~----~~---d~v~vi~~~~~~~~~~~~~~~~~~R~~mi~~a~~~--~--~~~~v~~~~~~d~ 75 (158)
T cd02167 7 KFAPLHTGHVYLIYKALS----QV---DELLIIVGSDDTRDDARTGLPLEKRLRWLREIFPD--Q--ENIVVHTLNEPDI 75 (158)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC--C--CCEEEEeCCCCCC
Confidence 789999999999886543 22 445553432211 23368999999998887752 2 3455667776443
Q ss_pred -CCChhHHHHHHHHHHhcC
Q 014895 340 -YAGPTEVQWHAKARINAG 357 (416)
Q Consensus 340 -yAGPREAllHAiiRkNyG 357 (416)
|--..-..|-+.|+...+
T Consensus 76 ~~~~~~w~~w~~~v~~~v~ 94 (158)
T cd02167 76 PEYPNGWDIWSNRVKTLIA 94 (158)
T ss_pred CCCchhHHHHHHHHHHHHh
Confidence 332345555777777766
No 24
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=92.38 E-value=0.34 Score=41.99 Aligned_cols=93 Identities=12% Similarity=0.160 Sum_probs=51.3
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCC
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFP 335 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG-~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP 335 (416)
.|++.=+-+++|+||..+++.|.+.+.++- .++.-.++.. ..+.--.+.+.|++..+.+ ++. +.+ + |
T Consensus 3 ~v~~~G~FDgvH~GH~~ll~~a~~~~~~l~---v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~---~~v--d~v-~---~ 70 (129)
T cd02171 3 VVITYGTFDLLHIGHLNLLERAKALGDKLI---VAVSTDEFNAGKGKKAVIPYEQRAEILESI---RYV--DLV-I---P 70 (129)
T ss_pred EEEEeeeeccCCHHHHHHHHHHHHhCCEEE---EEEeccHhHHhcCCCCCCCHHHHHHHHHcC---Ccc--CEE-e---c
Confidence 455555889999999999986644221110 1111112111 1123456778898876543 122 222 2 2
Q ss_pred CCcCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 336 SPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 336 ~~mryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
+..|.+-+-. + +.+.++++++|.|+.
T Consensus 71 ----~~~~~~f~~~--~-~~l~~~~vv~G~d~~ 96 (129)
T cd02171 71 ----ETNWEQKIED--I-KKYNVDVFVMGDDWE 96 (129)
T ss_pred ----CCCccChHHH--H-HHhCCCEEEECCCCc
Confidence 2344332222 2 678999999999984
No 25
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=92.20 E-value=1 Score=42.30 Aligned_cols=112 Identities=18% Similarity=0.268 Sum_probs=62.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC-CCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-KADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t-K~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryA 341 (416)
+-||+|.||..|.+.|.+ ..+.....++..|.--.+ +....+.+.|++-.+.++++ .| . +.+-+....-.
T Consensus 12 sFdP~H~GH~~l~~~a~~---~~~~d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~~--~~--~--~~v~~~E~~~~ 82 (203)
T PRK00071 12 TFDPPHYGHLAIAEEAAE---RLGLDEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIAD--NP--R--FSVSDIELERP 82 (203)
T ss_pred CCCccCHHHHHHHHHHHH---HcCCCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhcC--CC--c--eEEeHHHHhCC
Confidence 799999999999876643 222222223333321111 23678999999999988852 22 2 33444433334
Q ss_pred ChhHHH--HHHHHHHhcCCc--EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 342 GPTEVQ--WHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 342 GPREAl--lHAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
||.=.+ +.. +++.|... .||+|-|-.- +|-.-++.++|++.+
T Consensus 83 ~~syT~~tl~~-l~~~~p~~~~~fiiG~D~l~--------~l~~W~~~~~i~~~~ 128 (203)
T PRK00071 83 GPSYTIDTLRE-LRARYPDVELVFIIGADALA--------QLPRWKRWEEILDLV 128 (203)
T ss_pred CCCCHHHHHHH-HHHHCCCCcEEEEEcHHHhh--------hcccccCHHHHHHhC
Confidence 443222 222 34556433 5899998322 233445678888754
No 26
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=92.11 E-value=1.9 Score=39.18 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=52.2
Q ss_pred ecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCC
Q 014895 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (416)
Q Consensus 262 QTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryA 341 (416)
=|-||+|.||..+.+.|. +.+ +-+++-|..-..|...++.+.|++-.+..++ .+| .+.+..+ . -|
T Consensus 8 GsFdP~H~GHl~~~~~a~----~~~---d~v~v~~~~~~~k~~~~~~~~R~~ml~~a~~--~~~--~v~v~~~--e-~~- 72 (159)
T PRK00168 8 GSFDPITNGHLDIIERAS----RLF---DEVIVAVAINPSKKPLFSLEERVELIREATA--HLP--NVEVVSF--D-GL- 72 (159)
T ss_pred eecCCCCHHHHHHHHHHH----HHC---CEEEEEECCCCCCCCCCCHHHHHHHHHHHHc--CCC--CEEEecC--C-cc-
Confidence 489999999999986553 443 4444434333346678999999999998775 332 3333332 2 11
Q ss_pred ChhHHHHHHHHHHhcCCcEEEecCC
Q 014895 342 GPTEVQWHAKARINAGANFYIVGRD 366 (416)
Q Consensus 342 GPREAllHAiiRkNyGcTHfIVGRD 366 (416)
..+ ..+-+++++|+.|=|
T Consensus 73 -t~~------~~~~~~~~~~~~gl~ 90 (159)
T PRK00168 73 -LVD------FAREVGATVIVRGLR 90 (159)
T ss_pred -HHH------HHHHcCCCEEEecCc
Confidence 111 235678999987744
No 27
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=92.00 E-value=1.5 Score=39.70 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=52.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAG 342 (416)
|-||+|.||..+.+.|. +.. +-+++-|..-+.|...++.+.|++-.+..+++ +| ...+ .+.. +
T Consensus 7 sFdP~H~GHl~l~~~a~----~~~---d~v~~~~~~~p~k~~~~~~~~R~~m~~~a~~~--~~--~~~v--~~~e----~ 69 (155)
T TIGR01510 7 SFDPVTNGHLDIIKRAA----ALF---DEVIVAVAKNPSKKPLFSLEERVELIKDATKH--LP--NVRV--DVFD----G 69 (155)
T ss_pred ecCCCcHHHHHHHHHHH----HhC---CEEEEEEcCCCCCCCCcCHHHHHHHHHHHHhh--CC--CeEE--cCcc----c
Confidence 88999999999987653 332 44444455445566789999999999888852 33 2333 3333 2
Q ss_pred hhHHHHHHHHHHhcCCcEEEecCC
Q 014895 343 PTEVQWHAKARINAGANFYIVGRD 366 (416)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRD 366 (416)
. ..+ .-+-+...+||.|-|
T Consensus 70 y---t~d--t~~~l~~~~~i~G~~ 88 (155)
T TIGR01510 70 L---LVD--YAKELGATFIVRGLR 88 (155)
T ss_pred h---HHH--HHHHcCCCEEEecCc
Confidence 2 222 233556788887754
No 28
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=91.78 E-value=0.8 Score=42.76 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=65.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C--CCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K--ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t-K--~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
|-||+|.||..+.+.|.+. .+ .+.+++-|..... | ..-++.+.|++-.+.++++ .| . +.+-....+
T Consensus 5 sFdP~H~GHl~l~~~a~~~---~~--~d~v~~~p~~~~p~k~~~~~~~~~~R~~m~~~a~~~--~~-~---~~v~~~E~~ 73 (193)
T TIGR00482 5 SFDPIHYGHLLLAEEALDH---LD--LDKVIFVPTANPPHKKTYEAASSHHRLAMLKLAIED--NP-K---FEVDDFEIK 73 (193)
T ss_pred cCCccCHHHHHHHHHHHHH---cC--CCEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC-C---EEEeHHHHh
Confidence 7899999999998765432 22 1334443543321 3 2448999999999988862 22 2 334455666
Q ss_pred CCCh--hHHHHHHHHHHhcC-Cc-EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 340 YAGP--TEVQWHAKARINAG-AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 340 yAGP--REAllHAiiRkNyG-cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
-.|| .=-.+.. +|+.|. +. .||+|-|-.-=-. .+| +.++|++.+
T Consensus 74 ~~~~syT~~tl~~-l~~~~p~~~~~~iiG~D~l~~l~-----~W~---~~~~i~~~~ 121 (193)
T TIGR00482 74 RGGPSYTIDTLKH-LKKKYPDVELYFIIGADALRSFP-----LWK---DWQELLELV 121 (193)
T ss_pred CCCCCCHHHHHHH-HHHHCCCCeEEEEEcHHHhhhhc-----ccc---CHHHHHHhC
Confidence 6666 2223333 455564 33 5888998654321 233 667777653
No 29
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=91.76 E-value=1.3 Score=43.41 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=69.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYA 341 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Plv-G~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryA 341 (416)
|-||+|.||..+.+.+.+ .++. +-+++-|.. .+.|....+.+.|++-.+..+++ .+....-+.+-.....-.
T Consensus 30 SFdPiH~GHl~ia~~~~~---~l~l--d~v~~iP~~~pp~K~~~~~~~~Rl~M~~lAi~~--~~~~~~~~~v~~~Ei~~~ 102 (243)
T PRK06973 30 TFDPIHDGHLALARRFAD---VLDL--TELVLIPAGQPWQKADVSAAEHRLAMTRAAAAS--LVLPGVTVRVATDEIEHA 102 (243)
T ss_pred CCCCCcHHHHHHHHHHHH---HcCC--CEEEEEECCcCCCCCCCCCHHHHHHHHHHHHHh--ccCCCceEEEeHhhhhCC
Confidence 899999999999765543 2221 334443653 34455678999999999888862 211212244555665567
Q ss_pred ChhHHH-HHHHHHHhcC--Cc-EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 342 GPTEVQ-WHAKARINAG--AN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 342 GPREAl-lHAiiRkNyG--cT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
||.=.+ -=..+++.|| +. .||+|-|-.--- =.=++.++|++.+
T Consensus 103 g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~~l--------~~W~~~~~L~~~~ 149 (243)
T PRK06973 103 GPTYTVDTLARWRERIGPDASLALLIGADQLVRL--------DTWRDWRRLFDYA 149 (243)
T ss_pred CCCcHHHHHHHHHHHcCCCCCEEEEEchhhHhhc--------CCcccHHHHHHhC
Confidence 776544 1134566683 43 689999865432 2234557777653
No 30
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=91.58 E-value=0.91 Score=41.15 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=53.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAG 342 (416)
|-||+|.||..++++|.+ +. +-+.+-|..-..|..-++.+.|++-.+..++ -+|.- .+... +.|
T Consensus 9 SFDPih~GHl~ii~~A~~----~~---D~v~v~v~~np~K~~~~s~e~R~~~l~~~~~--~~~~v-~v~~~------~~~ 72 (140)
T PRK13964 9 SFDPFHKGHLNILKKALK----LF---DKVYVVVSINPDKSNASDLDSRFKNVKNKLK--DFKNV-EVLIN------ENK 72 (140)
T ss_pred eeCCCCHHHHHHHHHHHH----hC---CEEEEEeccCCCCCCCCCHHHHHHHHHHHHc--CCCCc-EEecC------cCC
Confidence 889999999999876643 32 4344445555567778999999999988886 24432 22211 112
Q ss_pred hhHHHHHHHHHHhcCCcEEEecCC
Q 014895 343 PTEVQWHAKARINAGANFYIVGRD 366 (416)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVGRD 366 (416)
.+-+ +.|..||+-.|-|=.
T Consensus 73 ---l~v~--~~~~~~a~~ivrGlR 91 (140)
T PRK13964 73 ---LTAE--IAKKLGANFLIRSAR 91 (140)
T ss_pred ---cHHH--HHHHCCCeEEEEecC
Confidence 1222 457779997777743
No 31
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=91.36 E-value=1.6 Score=40.62 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=52.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcccc---CCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Plv---G~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-||+|.||..+++.|++ . ++-+++-+-. ..++...++++.|++-.+..+.+.-.+.+++. ++|.+-.
T Consensus 8 ~F~P~H~GHl~~i~~a~~----~---~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~--~~pi~D~ 78 (174)
T PRK01153 8 RFQPFHKGHLEVIKWILE----E---VDELIIGIGSAQESHTLKNPFTAGERILMIRKALEEEGIDLSRYY--IIPIPDI 78 (174)
T ss_pred ccCCCCHHHHHHHHHHHH----h---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCcceee--EecCCCc
Confidence 678999999999886544 2 2444442211 12355678999999999988753333333333 5554322
Q ss_pred CCChhHHHHHHHHHHhcC
Q 014895 340 YAGPTEVQWHAKARINAG 357 (416)
Q Consensus 340 yAGPREAllHAiiRkNyG 357 (416)
..+..|-+.+++--.
T Consensus 79 ---~~~~~w~~~v~~~~~ 93 (174)
T PRK01153 79 ---EFNSIWVSHVESYTP 93 (174)
T ss_pred ---chHHHHHHHHHHhCC
Confidence 267789888866554
No 32
>PRK13671 hypothetical protein; Provisional
Probab=91.25 E-value=1.2 Score=45.21 Aligned_cols=94 Identities=20% Similarity=0.342 Sum_probs=57.9
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC---CCCChHHHHHHHHHHHHcCcCCCCceEEEe
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA---DDVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~---dDip~~vR~r~y~~~l~~~y~p~~~~~l~i 333 (416)
.|++ +-||+|.||.++.+.+.+ +.+ .+.+++-|-....+. .-++.+.|.+- ++..| -| .|+ =
T Consensus 4 GIIa--eFNP~H~GHl~~~~~a~~---~~~--~d~vi~vpSg~~~qrg~pa~~~~~~R~~m---a~~~G---~D-LVi-E 68 (298)
T PRK13671 4 GIIA--EYNPFHNGHIYQINYIKN---KFP--NEKIIVILSGKYTQRGEIAVASFEKRKKI---ALKYG---VD-KVI-K 68 (298)
T ss_pred eEEe--eeCCccHHHHHHHHHHHH---hcC--CCEEEEEECcCCCCCCCCCCCCHHHHHHH---HHHcC---CC-EEE-e
Confidence 4777 999999999999876543 222 233444355444444 44588888774 33332 34 333 3
Q ss_pred CC------CCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCC
Q 014895 334 FP------SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGM 370 (416)
Q Consensus 334 lP------~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGv 370 (416)
+| .+-.||---=.++ ..+||+++.+|-++..+
T Consensus 69 LP~~~a~~sAe~FA~gaV~lL-----~~lgvd~l~FGsE~~d~ 106 (298)
T PRK13671 69 LPFEYATQAAHIFAKGAIKKL-----NKEKIDKLIFGSESNDI 106 (298)
T ss_pred ccHHHHhhchHHHHHHHHHHH-----HHcCCCEEEECCCCCCH
Confidence 45 2344543334444 45799999999998776
No 33
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=91.02 E-value=0.56 Score=35.59 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=34.8
Q ss_pred eecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcc--ccCCCCC-CCCChHHHHHHHHHHH
Q 014895 261 FQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHP--LGGFTKA-DDVPLDVRMEQHSKVL 319 (416)
Q Consensus 261 FQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~P--lvG~tK~-dDip~~vR~r~y~~~l 319 (416)
+=+-||+|.||.++++++. +.+. ...+++.+ .....|. .-.+.+.|.+..+.+.
T Consensus 5 ~G~Fdp~H~GH~~~l~~a~----~~~~-~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 61 (66)
T TIGR00125 5 VGTFDPFHLGHLDLLERAK----ELFD-ELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALK 61 (66)
T ss_pred cCccCCCCHHHHHHHHHHH----HhCC-EEEEEECchHhccccCCCCCCCHHHHHHHHHHhc
Confidence 3388999999999987653 3431 12344432 2232333 5689999999887665
No 34
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=90.25 E-value=6.8 Score=39.74 Aligned_cols=104 Identities=20% Similarity=0.270 Sum_probs=64.3
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEE--ccc--cCCC--CCCCCChHHHHHHHHHHHHcCcCCCCceE
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL--HPL--GGFT--KADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl--~Pl--vG~t--K~dDip~~vR~r~y~~~l~~~y~p~~~~~ 330 (416)
.|+++=+-+-+|+||..|++.|.+.|.+.+..-.++-. ||- .... ..--.+.+.|.+.++.+ + . +.+
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~---g-V--D~~- 87 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL---G-V--DYV- 87 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc---C-C--CEE-
Confidence 57777799999999999999887766555422112222 332 1111 12245678887766542 1 1 322
Q ss_pred EEeCCCCcCCCC-hhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 331 VSIFPSPMHYAG-PTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 331 l~ilP~~mryAG-PREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
+ ++|....++. +-|..++-++.+.+++.+++||.|+.
T Consensus 88 ~-~~~F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~ 125 (305)
T PRK05627 88 L-VLPFDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFR 125 (305)
T ss_pred E-EecCCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCC
Confidence 3 4665422222 23556777888999999999999985
No 35
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=89.59 E-value=4.1 Score=37.15 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=67.7
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccC----C-CCCCCCChHHHHHHHHHHHHcCcCCCCceEE
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG----F-TKADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG----~-tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l 331 (416)
+|+..=|-||+|.||..+++.| .+.+ +-+++-.-.. . ++.--.|.+.|++..+.+++ +..|..+..
T Consensus 3 ~v~~gGtFDplH~GH~~ll~~A----~~~~---d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~-~~~~~~~~~- 73 (153)
T PRK00777 3 KVAVGGTFDPLHDGHRALLRKA----FELG---KRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLK-AVEYDREYE- 73 (153)
T ss_pred EEEEecccCCCCHHHHHHHHHH----HHcC---CEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHH-hcCCCCcEE-
Confidence 3444448999999999998755 3444 3343311111 1 22346799999999998885 455444433
Q ss_pred EeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeee
Q 014895 332 SIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGI 407 (416)
Q Consensus 332 ~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~ 407 (416)
+.|..-. -||. +..+ ..-+++|.|- +.+...-.++..+. |+..++|+-++..-
T Consensus 74 -i~~i~d~-~gp~-------~~~~--~d~ivvs~et-----------~~~~~~in~~r~~~-gl~~l~i~~v~~~~ 126 (153)
T PRK00777 74 -IVKIDDP-YGPA-------LEDD--FDAIVVSPET-----------YPGALKINEIRRER-GLKPLEIVVIDFVL 126 (153)
T ss_pred -EEecccc-CCCc-------cccC--CCEEEEChhh-----------hhhHHHHHHHHHHC-CCCceEEEEEeeee
Confidence 4454322 3442 1122 5667777762 22334445555554 56666666666543
No 36
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=89.27 E-value=1.9 Score=40.10 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=58.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAG 342 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAG 342 (416)
|-+|++.||..++++|.+..-++- .+++.||- |..-++.+-|++-.+.... -+|.- .+.+ |.|
T Consensus 10 SFDPiTnGHlDii~RA~~~Fd~vi---VaV~~np~----K~plFsleER~~l~~~~~~--~l~nV-~V~~-------f~~ 72 (159)
T COG0669 10 SFDPITNGHLDIIKRASALFDEVI---VAVAINPS----KKPLFSLEERVELIREATK--HLPNV-EVVG-------FSG 72 (159)
T ss_pred CCCCCccchHHHHHHHHHhccEEE---EEEEeCCC----cCCCcCHHHHHHHHHHHhc--CCCce-EEEe-------ccc
Confidence 789999999999988765333331 35667776 9999999999999988875 46433 3331 333
Q ss_pred hhHHHHHHHHHHhcCCcEEEec
Q 014895 343 PTEVQWHAKARINAGANFYIVG 364 (416)
Q Consensus 343 PREAllHAiiRkNyGcTHfIVG 364 (416)
|=+=++|..||+.+|=|
T Consensus 73 -----Llvd~ak~~~a~~ivRG 89 (159)
T COG0669 73 -----LLVDYAKKLGATVLVRG 89 (159)
T ss_pred -----HHHHHHHHcCCCEEEEe
Confidence 45567888999999866
No 37
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=88.47 E-value=5.7 Score=38.40 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=46.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcC-CCCCeEEEcccc-CCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPLG-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY 340 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~-~~~~~lLl~Plv-G~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mry 340 (416)
|-||+|.||..+.+.+.+.+...+ +......+.|.- .+.|..-.+.+.|++-.+..+++ .| . +.+-++...-
T Consensus 8 SFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~--~~-~---~~v~~~E~~~ 81 (225)
T cd09286 8 SFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGKKGLASAKHRVAMCRLAVQS--SD-W---IRVDDWESLQ 81 (225)
T ss_pred CcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCCCCCCCHHHHHHHHHHHHcc--CC-C---EEEEehhccC
Confidence 799999999999876655332111 001112344642 23567788999999988877752 22 2 3355666666
Q ss_pred CCh
Q 014895 341 AGP 343 (416)
Q Consensus 341 AGP 343 (416)
.||
T Consensus 82 ~~~ 84 (225)
T cd09286 82 PEW 84 (225)
T ss_pred Ccc
Confidence 666
No 38
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=88.46 E-value=3.8 Score=38.96 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=61.1
Q ss_pred CeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcC------CCCce
Q 014895 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVL------DPETT 329 (416)
Q Consensus 256 ~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~------p~~~~ 329 (416)
.+||. ..||+..||.||+..|. .+ |+-|.|- +| ....-.+|.+.|.+=-+.=.+ -+ |.+.-
T Consensus 2 gaIVM--NaNPFT~GH~yLiE~Aa---~~----~d~l~vF-VV-~eD~S~Fpf~~R~~LVk~G~~--~L~NV~V~~~g~Y 68 (182)
T PF08218_consen 2 GAIVM--NANPFTLGHRYLIEQAA---KE----CDWLHVF-VV-SEDRSLFPFADRYELVKEGTA--DLPNVTVHPGGDY 68 (182)
T ss_pred ceEEE--cCCCCccHHHHHHHHHH---Hh----CCEEEEE-EE-ccccCcCCHHHHHHHHHHHhC--cCCCEEEEcCCCe
Confidence 36777 89999999999987553 23 3655552 22 345566999999875443332 13 22222
Q ss_pred EE--EeCCCCcCCCChhH----H-----HHHHHHHHhcCCcEEEecCCCCCCC
Q 014895 330 IV--SIFPSPMHYAGPTE----V-----QWHAKARINAGANFYIVGRDPAGMG 371 (416)
Q Consensus 330 ~l--~ilP~~mryAGPRE----A-----llHAiiRkNyGcTHfIVGRDHAGvG 371 (416)
++ +.||.--.-..-.. + +|--.|++.+|.|+=.||-++-..=
T Consensus 69 iIS~aTFPsYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~v 121 (182)
T PF08218_consen 69 IISSATFPSYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPV 121 (182)
T ss_pred eeecccChhhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHH
Confidence 22 23442222111111 1 3444588899999999999866553
No 39
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=88.08 E-value=2.1 Score=40.87 Aligned_cols=111 Identities=18% Similarity=0.340 Sum_probs=68.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccC--CCC-CCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG--FTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG--~tK-~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
|-||+|-||..+.+.+++. ++.. ..+++ |-.+ .++ .+-.|.+.|++=.+.+++++ |. +.+--..+.
T Consensus 11 sFdP~H~GHl~ia~~~~~~---l~ld-~vi~~-ps~~~p~k~~~~~a~~~~R~~Ml~la~~~~--~~----~~v~~~e~~ 79 (197)
T COG1057 11 SFDPPHYGHLLIAEEALDQ---LGLD-KVIFL-PSPVPPHKKKKELASAEHRLAMLELAIEDN--PR----FEVSDREIK 79 (197)
T ss_pred CCCCCCHHHHHHHHHHHHh---cCCC-eEEEe-cCCCCCCCCCccCCCHHHHHHHHHHHHhcC--CC----cceeHHHHH
Confidence 7999999999998766542 3322 22333 3333 233 56899999999999888742 22 334445555
Q ss_pred CCChh---HHHHHHHHHHhcCCc-EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 340 YAGPT---EVQWHAKARINAGAN-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 340 yAGPR---EAllHAiiRkNyGcT-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
--|+. +.|-|-.-+.|-.+. -||+|-|.-- .|-.=++.++|++.+
T Consensus 80 r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~--------~l~~W~~~~ell~~~ 128 (197)
T COG1057 80 RGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLA--------SLPKWYDWDELLKLV 128 (197)
T ss_pred cCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhh--------hhhhhhhHHHHHHhC
Confidence 55664 666654444444442 3899998532 133345777888765
No 40
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=87.98 E-value=1.7 Score=39.27 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=42.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEE--ccccCCCC-CCC-CChHHHHHHHHHHHHcCcCCCCceEEEeCCCCc
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLL--HPLGGFTK-ADD-VPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPM 338 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl--~PlvG~tK-~dD-ip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~m 338 (416)
|-||+|.||..|++.|.+.+. ....+.+ .++.-.++ +.- .+.+.|++..+.+++ .+- ++ ..+.+.|..=
T Consensus 7 tFD~lH~GH~~Ll~~a~~~~~----d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~-~~~-~~-~~~~i~~i~d 79 (143)
T cd02164 7 TFDRLHDGHKILLSVAFLLAG----EKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLV-DLK-PT-LKYEIVPIDD 79 (143)
T ss_pred cCCCCCHHHHHHHHHHHHHhc----CCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHH-hcC-CC-ceEEEEEccC
Confidence 899999999999987654321 1111111 22211111 223 499999999999996 333 33 2344666554
Q ss_pred CCCCh
Q 014895 339 HYAGP 343 (416)
Q Consensus 339 ryAGP 343 (416)
.| ||
T Consensus 80 ~~-Gp 83 (143)
T cd02164 80 PY-GP 83 (143)
T ss_pred CC-CC
Confidence 44 44
No 41
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=86.59 E-value=6 Score=40.63 Aligned_cols=132 Identities=20% Similarity=0.234 Sum_probs=76.0
Q ss_pred CCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEE--
Q 014895 254 QADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIV-- 331 (416)
Q Consensus 254 gw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l-- 331 (416)
....+++ +.||+|.||.+|+++|.+ .. +-+.| .+...+..-++.+.|++-.+..+++ +| +-.++
T Consensus 140 ~i~~~~g--~fdP~t~GH~~li~~A~~----~~---d~~~v--~v~~~~~~~f~~~~R~~~v~~~~~~--~~-nv~v~~~ 205 (332)
T TIGR00124 140 KIGSIVM--NANPFTNGHRYLIEQAAR----QC---DWLHL--FVVKEDASLFSYDERFALVKQGIQD--LS-NVTVHNG 205 (332)
T ss_pred cEEEEEe--CcCCCchHHHHHHHHHHH----HC---CEEEE--EEEeCCCCCCCHHHHHHHHHHHhcC--CC-CEEEEec
Confidence 3445677 999999999999876543 21 32222 1123456699999999998888862 33 21222
Q ss_pred -------EeCCCCcCCC-C---hhHH-----HHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHH-hhcC
Q 014895 332 -------SIFPSPMHYA-G---PTEV-----QWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLS-MALG 394 (416)
Q Consensus 332 -------~ilP~~mryA-G---PREA-----llHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~-~~~~ 394 (416)
+.||.--.-. + --.+ ||--.|+.-+|.||=-||-++-..= ...|.. ..++++. ..++
T Consensus 206 ~~~~is~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~-----t~~yn~-~m~~~~~~~~~~ 279 (332)
T TIGR00124 206 SAYIISRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV-----TALYNQ-KMKYWLEEPNDA 279 (332)
T ss_pred CCceeccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh-----HHHHHH-HHHHhhhccCCC
Confidence 1233211111 1 1122 2333567789999999999875543 246632 2233343 2332
Q ss_pred CCceeEeeeeee
Q 014895 395 LEKLNILPFRVG 406 (416)
Q Consensus 395 ~~~i~i~p~~~~ 406 (416)
.+|++++++..
T Consensus 280 -~~I~~~~I~R~ 290 (332)
T TIGR00124 280 -PPIEVVEIQRK 290 (332)
T ss_pred -CCcEEEEEeee
Confidence 36888887753
No 42
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=85.73 E-value=9.7 Score=38.87 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=64.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC------CCChHHHHHHHHHHHHcCcCCCCceE
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD------DVPLDVRMEQHSKVLEDGVLDPETTI 330 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~d------Dip~~vR~r~y~~~l~~~y~p~~~~~ 330 (416)
.|++.=.-+=+|+||..|++.|.+.|.+.+....++...|..-+.-.- -.+...|.+..+ . +.=+ .+
T Consensus 17 ~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~---~---~gvd-~~ 89 (304)
T COG0196 17 CVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLA---G---YGVD-AL 89 (304)
T ss_pred cEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHH---h---cCCc-EE
Confidence 455555778899999999999988787766444455554443222222 234555555332 1 2223 23
Q ss_pred EEeCCCCcCCC--ChhHHHHHHHHHHhcCCcEEEecCCC
Q 014895 331 VSIFPSPMHYA--GPTEVQWHAKARINAGANFYIVGRDP 367 (416)
Q Consensus 331 l~ilP~~mryA--GPREAllHAiiRkNyGcTHfIVGRDH 367 (416)
+ +++..-.+| .| +.-.+ ++-+++.|.|+|||-|.
T Consensus 90 ~-v~~F~~~fa~ls~-~~Fv~-~lv~~l~~k~ivvG~DF 125 (304)
T COG0196 90 V-VLDFDLEFANLSA-EEFVE-LLVEKLNVKHIVVGFDF 125 (304)
T ss_pred E-EEeCCHhHhhCCH-HHHHH-HHHhccCCcEEEEeccc
Confidence 3 567665555 45 44555 99999999999999994
No 43
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=85.30 E-value=7.3 Score=39.86 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=57.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcccc---CCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Plv---G~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-||+|.||..+++.|.+ .. +-++|-|-. -.++.+-++++.|++-.+..++ + ++..++. ++|..=.
T Consensus 14 ~F~P~H~GHl~~i~~a~~----~~---d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~~~-~-~~~~r~~--~~pi~d~ 82 (340)
T PRK05379 14 RFQPFHNGHLAVIREALS----RA---KKVIVLIGSADLARSIKNPFSFEERAQMIRAALA-G-IDLARVT--IRPLRDS 82 (340)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEEccCCCCCcCCCCCCHHHHHHHHHHHhh-c-CCCceEE--EEECCCC
Confidence 789999999999876543 32 445553321 1355677999999999998886 3 4445544 5554322
Q ss_pred CCChhHHHHHHHHHHh------cCCcEEEecCCC
Q 014895 340 YAGPTEVQWHAKARIN------AGANFYIVGRDP 367 (416)
Q Consensus 340 yAGPREAllHAiiRkN------yGcTHfIVGRDH 367 (416)
. .++..|-+-+++- -..+-.++|.|-
T Consensus 83 ~--~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~ 114 (340)
T PRK05379 83 L--YNDSLWLAEVQAAVAEHAGADARIGLIGHEK 114 (340)
T ss_pred C--cChHHHHHHHHHHHHhccCCCCcEEEECCcC
Confidence 1 3577888887642 234445556443
No 44
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=84.65 E-value=6.5 Score=36.49 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=50.4
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEc-cccC--CCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH-PLGG--FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~-PlvG--~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-||+|.||..+++.|.+ .. +-|.|- |-.. .++..-++++.|++-.+..++ ..+ +.. +.++|..-.
T Consensus 7 ~FdP~H~GHl~ii~~a~~----~~---D~lii~i~s~~~~~k~~~p~~~~eR~~mi~~al~--~~~-~~~-~~~vP~~d~ 75 (165)
T TIGR01527 7 RFQPFHLGHLEVIKKIAE----EV---DELIIGIGSAQESHTLENPFTAGERILMITQSLK--EVG-DLT-YYIIPIEDI 75 (165)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHh--cCC-Cce-EEEEecCCc
Confidence 678999999999886543 32 444441 2211 123567889999998877775 333 222 336665322
Q ss_pred CCChhHHHHHHHHHHhcC
Q 014895 340 YAGPTEVQWHAKARINAG 357 (416)
Q Consensus 340 yAGPREAllHAiiRkNyG 357 (416)
.....|-+.++.-..
T Consensus 76 ---~~~~~w~~~v~~~~p 90 (165)
T TIGR01527 76 ---ERNSIWVSYVESMTP 90 (165)
T ss_pred ---cHHHHHHHHHHHhCC
Confidence 367789998885443
No 45
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=84.45 E-value=5 Score=35.99 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=53.4
Q ss_pred CeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CCCCChHHHHHHHHHHHHcCcCCCCceEEEeC
Q 014895 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (416)
Q Consensus 256 ~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK-~dDip~~vR~r~y~~~l~~~y~p~~~~~l~il 334 (416)
+.|++.=+-+.+|+||..+++.|.+.+..+ ..++.-++.+...+ .--.+.+-|++..+.+ ++. + .++ ++
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~~~~---vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~l---g~V--D-~vi-~~ 74 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLGDIL---VVSLTSDRYVNKGPGRPIFPEDLRAEVLAAL---GFV--D-YVV-LF 74 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhCCeE---EEEEeChHHhccCCCCCCCCHHHHHHHHHcc---CCc--c-EEE-EC
Confidence 456666689999999999998765432211 01222122222112 2235678888866532 222 3 233 34
Q ss_pred CCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 014895 335 PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (416)
Q Consensus 335 P~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (416)
|. -.|.| .+. .+++.++++|-|+..
T Consensus 75 ~~----~~~~~-fi~-----~l~~~~vv~G~d~~f 99 (144)
T cd02172 75 DN----PTALE-IID-----ALQPNIYVKGGDYEN 99 (144)
T ss_pred CC----CCHHH-HHH-----HhCCCEEEECCCccc
Confidence 52 23544 322 599999999999864
No 46
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=83.25 E-value=4.3 Score=41.37 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=62.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcccc-CCCC-CCCCCh-HHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG-GFTK-ADDVPL-DVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Plv-G~tK-~dDip~-~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
|-||+|.||..+.+.+.+ ..+. +-+++-|-. -+-| ....+. +.|++-.+.++++ .| . +.+-+...+
T Consensus 9 sFdP~H~GHl~la~~a~~---~~~~--d~v~~~p~~~~p~K~~~~~~~~~~R~~m~~~a~~~--~~-~---~~v~~~E~~ 77 (342)
T PRK07152 9 SFDPIHKGHINIAKKAIK---KLKL--DKLFFVPTYINPFKKKQKASNGEHRLNMLKLALKN--LP-K---MEVSDFEIK 77 (342)
T ss_pred CCCCcCHHHHHHHHHHHH---HhCC--CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHhh--CC-C---eEEeHHHHh
Confidence 899999999999875543 2222 333433432 2223 344554 8899988888863 22 2 334444444
Q ss_pred CCChhHH--HHHHHHHHhcCCc--EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 340 YAGPTEV--QWHAKARINAGAN--FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 340 yAGPREA--llHAiiRkNyGcT--HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
-.||.=. .+ ..+++.|.=+ .||+|-|-..= |-.-++.++|++.+
T Consensus 78 ~~~~syt~~tl-~~l~~~~p~~~~~~iiG~D~~~~--------l~~W~~~~~l~~~~ 125 (342)
T PRK07152 78 RQNVSYTIDTI-KYFKKKYPNDEIYFIIGSDNLEK--------FKKWKNIEEILKKV 125 (342)
T ss_pred CCCCCcHHHHH-HHHHHhCCCCcEEEEecHHHhhh--------cccccCHHHHHHhC
Confidence 4555311 22 3345557433 67899985443 22334567888754
No 47
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=82.63 E-value=2.4 Score=36.72 Aligned_cols=86 Identities=17% Similarity=0.235 Sum_probs=47.2
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEc--cccC-CCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH--PLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~--PlvG-~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+-+++|+||..++++|.+ ++.. ..+.++ |+.- ..+.--.+.+.|++.++.+ +|. +.+ +|.
T Consensus 6 ~FDg~H~GH~~~l~~a~~----~~~~-~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~---~~V--d~v----i~~--- 68 (125)
T TIGR01518 6 TFDLLHWGHINLLERAKQ----LGDY-LIVALSTDEFNLQKQKKAYHSYEHRKLILETI---RYV--DLV----IPE--- 68 (125)
T ss_pred eeCCCCHHHHHHHHHHHH----cCCE-EEEEEechHHHhhcCCCCCCCHHHHHHHHHcC---CCc--cEE----ecC---
Confidence 678999999999986643 3311 122222 2221 1122235668887766542 122 222 232
Q ss_pred CCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 014895 340 YAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (416)
Q Consensus 340 yAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (416)
. |.|.-.+- + +.+++.++++|-|+.|
T Consensus 69 -~-~~~~f~~~-l-~~~~~~~vv~G~D~~g 94 (125)
T TIGR01518 69 -K-SWEQKKQD-I-IDFNIDVFVMGDDWEG 94 (125)
T ss_pred -C-CccchHHH-H-HHcCCCEEEECCCccc
Confidence 1 22322222 3 4799999999999953
No 48
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=81.17 E-value=2.9 Score=35.76 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=30.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC-C--CCCCChHHHHHHHHHHHH
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-K--ADDVPLDVRMEQHSKVLE 320 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t-K--~dDip~~vR~r~y~~~l~ 320 (416)
|-||+|.||..+++.|. +.+...-.+++ |-.... | ..-++.+.|++-.+.+..
T Consensus 5 sFdP~H~GH~~~l~~a~----~~~~~~~vi~v-~~~~~~~k~~~~~~~~~~R~~ml~~~~~ 60 (157)
T PF01467_consen 5 SFDPPHNGHLNLLREAR----ELFDEDLVIVV-PSDNSPHKDKKPIFSFEERLEMLRAAFK 60 (157)
T ss_dssp --TT--HHHHHHHHHHH----HHSSESEEEEE-EEEHHCHSTTSSSSTHHHHHHHHHHHHT
T ss_pred EcCcccHHHHHHHHHHH----Hhccccccccc-cccccccccccccCcHHHHHHHHHHHHh
Confidence 78999999999987654 33311112333 322222 2 256899999999998885
No 49
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=80.93 E-value=12 Score=33.51 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred cCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCC---CCCChHHHHHHHHHHHHcCcCCCCce
Q 014895 253 RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKA---DDVPLDVRMEQHSKVLEDGVLDPETT 329 (416)
Q Consensus 253 rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~---dDip~~vR~r~y~~~l~~~y~p~~~~ 329 (416)
++=+.|++.=+-+-+|+||..+++.|.+.+..+ ..++--.|..-..|+ --.+.+-|++..+.+ ++. +.+
T Consensus 9 ~~~~~v~~~G~FDgvH~GH~~ll~~a~~~~~~~---~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~---~~V--D~v 80 (144)
T TIGR02199 9 RGKKIVFTNGCFDILHAGHVSYLQQARALGDRL---VVGVNSDASVKRLKGETRPINPEEDRAEVLAAL---SSV--DYV 80 (144)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHhCCcc---EEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc---CCC--CEE
Confidence 343567776689999999999998764432211 122333343221121 145678888766643 123 333
Q ss_pred EEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 014895 330 IVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (416)
Q Consensus 330 ~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (416)
++ ++ .+ .|.|-+ +.+++.++++|-|+..
T Consensus 81 i~--f~-~~---~~~~fi------~~l~~~~vv~G~d~~~ 108 (144)
T TIGR02199 81 VI--FD-ED---TPEELI------GELKPDILVKGGDYKV 108 (144)
T ss_pred EE--CC-CC---CHHHHH------HHhCCCEEEECCCCCC
Confidence 33 32 11 343332 3699999999998764
No 50
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=80.69 E-value=6.9 Score=40.15 Aligned_cols=175 Identities=16% Similarity=0.197 Sum_probs=97.9
Q ss_pred hcccCCcEEE---EeeEEEecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCC
Q 014895 211 VITPAGNWLV---GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGY 287 (416)
Q Consensus 211 ~~~~~g~~~v---gG~i~~l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~ 287 (416)
++...|=|-| .+-+.+++... ..|.+|..+-+..|.. .+.+.+||. -+||.--||.||+.+|+ .+
T Consensus 104 lFk~~GF~~i~~~~~~ivlmENs~--trl~~y~~~L~k~r~~--gkkIgaIVM--NANPFTLGH~YLVEqAa---aq--- 171 (352)
T COG3053 104 LFKQCGFSEIASAENVIVLMENSA--TRLKDYLSSLKKLRHP--GKKIGAIVM--NANPFTLGHRYLVEQAA---AQ--- 171 (352)
T ss_pred HHHhCCceEeeccCceEEEeecCc--hhHHHHHHHHHHhccC--CCeeEEEEE--eCCCccchhHHHHHHHH---hh---
Confidence 4444555544 34456666332 2466665555555443 456678888 99999999999987652 22
Q ss_pred CCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCC------CceEE--EeCCCCcCCCChhH-----------HHH
Q 014895 288 KNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDP------ETTIV--SIFPSPMHYAGPTE-----------VQW 348 (416)
Q Consensus 288 ~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~------~~~~l--~ilP~~mryAGPRE-----------All 348 (416)
||-|=| .+=....-.+|++.|++-.+.=+. +++. +.-++ +.||.- |----+ .+|
T Consensus 172 -cDwlHL--FvV~eD~S~f~y~~R~~Lv~~G~~--~l~Nvt~HsgsdYiISrATFP~Y--FiKeq~vv~~s~t~iDl~iF 244 (352)
T COG3053 172 -CDWLHL--FVVKEDSSLFPYEDRLDLVKKGTA--DLPNVTVHSGSDYIISRATFPAY--FIKEQSVVNDSQTEIDLKIF 244 (352)
T ss_pred -CCEEEE--EEEecccccCCHHHHHHHHHHhhc--cCCceEEecCCCeEEEecccchh--hhhhHHHHHHHHHHHHHHHH
Confidence 353322 333356677999999986554443 3422 11112 234421 111122 345
Q ss_pred HHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhc-CCCceeEeeeeeeeeee
Q 014895 349 HAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMAL-GLEKLNILPFRVGIIVH 410 (416)
Q Consensus 349 HAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~-~~~~i~i~p~~~~~Y~~ 410 (416)
.--+++.+|.||=.||-++--.=. ..|. .+.++++.+.. .-.-|+++..+.--|.+
T Consensus 245 r~~iA~aLgIThRfVG~EP~c~vT-----~~YN-q~M~~~L~~~~~~~p~I~vvei~Rk~~~~ 301 (352)
T COG3053 245 RKYIAPALGITHRFVGTEPFCRVT-----AIYN-QQMRYWLEDPTISAPPIEVVEIERKKYQE 301 (352)
T ss_pred HHHHHHHhCcceeeecCCCCcHHH-----HHHH-HHHHHHHhccCCCCCceEEEEeehhhhcC
Confidence 555778999999999988654431 3453 23344554320 01237777766655553
No 51
>PLN02388 phosphopantetheine adenylyltransferase
Probab=78.53 E-value=7 Score=36.92 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=62.3
Q ss_pred CeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCC-CC-CCChHHHHHHHHHHHHcCcCCCCceEEEe
Q 014895 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTK-AD-DVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (416)
Q Consensus 256 ~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK-~d-Dip~~vR~r~y~~~l~~~y~p~~~~~l~i 333 (416)
..|++.=|-+.+|+||..|++.|.+.+.+.. ..++==+|+....+ +. -.|.+.|++..+.++. .+.|+.. +.+
T Consensus 20 ~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~v--vIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~--~~~p~~~-~~i 94 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRLFLKAAAELARDRI--VIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIK--SIKPELV-VQA 94 (177)
T ss_pred CeEEEEecCCccCHHHHHHHHHHHHhhhcCE--EEecCCChhhcccCCCcccCCHHHHHHHHHHHHH--HcCCCce-EEE
Confidence 4676667999999999999987765443210 01111234332111 22 3488999999999997 3455533 457
Q ss_pred CCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCC
Q 014895 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 371 (416)
Q Consensus 334 lP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG 371 (416)
.|..=.|+.. +. +=....+||..+...-|
T Consensus 95 ~~i~D~~Gpt-------~~--~~~~d~LVVS~ET~~g~ 123 (177)
T PLN02388 95 EPIIDPYGPS-------IV--DENLEAIVVSKETLPGG 123 (177)
T ss_pred EEecCCCCCc-------cc--CCCCCEEEEcHhHhhhH
Confidence 8877666644 11 22456678888755444
No 52
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=77.61 E-value=4.4 Score=38.15 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=35.5
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC-----CCCCCChHHHHHHHHHHHHcCcCCCCceEE
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT-----KADDVPLDVRMEQHSKVLEDGVLDPETTIV 331 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t-----K~dDip~~vR~r~y~~~l~~~y~p~~~~~l 331 (416)
.-.|+|.||-++++.|++ .. +-|.| ++|-. ..+-+.+.-|+-..+..+.+.-.+. ++.+
T Consensus 11 RFqP~H~GHl~vi~~al~----~v---DeliI--~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~-r~~~ 74 (172)
T COG1056 11 RFQPLHTGHLYVIKRALS----KV---DELII--VIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDL-RVYL 74 (172)
T ss_pred ccCCccHhHHHHHHHHHH----hC---CEEEE--EEccCcccccccCCCCccchhHHHHHHHHhcCCCc-eEEE
Confidence 455999999999986543 21 44555 56642 2333567778777775554333333 4443
No 53
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=77.35 E-value=24 Score=37.14 Aligned_cols=97 Identities=10% Similarity=0.044 Sum_probs=53.6
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCC----------CCCCCChHHHHHHHHHHHHcCcCCC
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFT----------KADDVPLDVRMEQHSKVLEDGVLDP 326 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~t----------K~dDip~~vR~r~y~~~l~~~y~p~ 326 (416)
..+.+=+-+|+|.||..|++.|.+ .. +.+.+-+..-.. +..-++.+.|++-.+..++ ..+
T Consensus 54 ~~v~~G~FdP~H~GH~~lI~~A~~----~~---d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~--~~~- 123 (399)
T PRK08099 54 IGVVFGKFYPLHTGHIYLIQRACS----QV---DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFK--YQK- 123 (399)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHH----HC---CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhC--CCC-
Confidence 445555999999999999986644 21 333332222111 2345788999998887775 333
Q ss_pred CceEEEeC---CCCcCCCChhHHHHHHHHHHhc-----CCcEEEecCC
Q 014895 327 ETTIVSIF---PSPMHYAGPTEVQWHAKARINA-----GANFYIVGRD 366 (416)
Q Consensus 327 ~~~~l~il---P~~mryAGPREAllHAiiRkNy-----GcTHfIVGRD 366 (416)
++.+..+ |.+.... -+..|-+-+++-. ..+.+++|.+
T Consensus 124 -~v~v~~~~~~~~~~~~~--~~~~w~~~v~~~v~~~~~~~~~vf~~~~ 168 (399)
T PRK08099 124 -NIKIHAFNEEGMEPYPH--GWDVWSNGIKAFMAEKGIQPDVIYTSEE 168 (399)
T ss_pred -CEEEEecCCCCCCCCCc--cHHHHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4444322 2222222 3455665555443 3455555533
No 54
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=77.23 E-value=6.8 Score=37.58 Aligned_cols=76 Identities=9% Similarity=0.053 Sum_probs=48.1
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCC-----CCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 265 NPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGF-----TKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 265 NPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~-----tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+|+|.||.++++.|++ . ++-+.| ++|- +..+=+.+.-|..-....+++. ...++ -++|..=.
T Consensus 14 QPfH~GHl~~I~~al~----~---~devII--~IGSA~~s~t~~NPFTa~ER~~MI~~aL~e~--~~~rv--~~ipi~D~ 80 (196)
T PRK13793 14 QPFHLAHMQTIEIALQ----Q---SRYVIL--ALGSAQMERNIKNPFLAIEREQMILSNFSLD--EQKRI--RFVHVVDV 80 (196)
T ss_pred CCCcHHHHHHHHHHHH----h---CCEEEE--EEccCCCCCCCCCCCCHHHHHHHHHHhcchh--hcceE--EEEecCCc
Confidence 4999999999876543 2 243444 3342 3445578888888777665421 22333 35666422
Q ss_pred CCChhHHHHHHHHHHhc
Q 014895 340 YAGPTEVQWHAKARINA 356 (416)
Q Consensus 340 yAGPREAllHAiiRkNy 356 (416)
.++++|-+-+++--
T Consensus 81 ---~~~~~Wv~~V~~~v 94 (196)
T PRK13793 81 ---YNDEKWVKQVKSLV 94 (196)
T ss_pred ---cchhHHHHHHHHhc
Confidence 47999999998866
No 55
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=77.15 E-value=9.5 Score=33.26 Aligned_cols=90 Identities=17% Similarity=0.245 Sum_probs=50.0
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccc--c-CCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEe
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL--G-GFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Pl--v-G~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~i 333 (416)
.+++.=+-||+|+||..+++.|. +.+. ...+.+++- . ..++.--.+.+-|++..+. ++ +. +.+++
T Consensus 3 ~v~~~G~FD~~H~GH~~ll~~a~----~~~~-~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~-~~--~v--d~v~~-- 70 (136)
T cd02170 3 RVYAAGTFDIIHPGHIRFLEEAK----KLGD-YLIVGVARDETVAKIKRRPILPEEQRAEVVEA-LK--YV--DEVIL-- 70 (136)
T ss_pred EEEEcCccCCCCHHHHHHHHHHH----HhCC-EEEEEECCcHHHHhcCCCCCCCHHHHHHHHHc-CC--Cc--CEEEE--
Confidence 34555588999999999987654 3330 011222211 1 1123355678999998775 21 22 22222
Q ss_pred CCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 334 FPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 334 lP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
. -|.+. .+.+ .+ +.+..+|+|.|+-
T Consensus 71 ~-------~~~~~-~~~l-~~-~~~~~vv~G~d~~ 95 (136)
T cd02170 71 G-------HPWSY-FKPL-EE-LKPDVIVLGDDQK 95 (136)
T ss_pred C-------CCCCH-hHHH-HH-HCCCEEEECCCCC
Confidence 1 14443 3444 33 5678999999873
No 56
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=76.79 E-value=7.1 Score=39.67 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcccc---CCCCCCCCChHHHHHHHHHHHH
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG---GFTKADDVPLDVRMEQHSKVLE 320 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Plv---G~tK~dDip~~vR~r~y~~~l~ 320 (416)
|-||+|.||..+++.|.+ .. +-+++-|-. -.++..-++.+.|++-.+..++
T Consensus 9 sFdP~H~GHl~ii~~a~~----~~---d~v~v~~~~~~~~~~~~~~~~~~~R~~~l~~~~~ 62 (325)
T TIGR01526 9 KFYPLHTGHIYLIYEAFS----KV---DELHIVVGSLFYDSKAKRPPPVQDRLRWLREIFK 62 (325)
T ss_pred ccCCCCHHHHHHHHHHHH----HC---CEEEEEECCCCcCccCCCCCCHHHHHHHHHHHhc
Confidence 899999999999876543 32 555553432 1145677899999999988775
No 57
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=75.04 E-value=7.2 Score=36.13 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=59.3
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccC-CCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCC-
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHY- 340 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG-~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mry- 340 (416)
|-||+|.||..+.+. +... +-+++-|-.. ..+..-++.+.|++-.+.++++ +......+ -....+-
T Consensus 10 SFDP~H~GHl~ia~~----~~~~----d~v~~vP~~~~~~~k~~~~~~~R~~M~~~ai~~--~~~~~~~v--~~~E~~~~ 77 (174)
T PRK08887 10 AFNPPSLGHKSVIES----LSHF----DLVLLVPSIAHAWGKTMLDYETRCQLVDAFIQD--LGLSNVQR--SDIEQELY 77 (174)
T ss_pred CCCCCCHHHHHHHHH----hhcC----CEEEEEECCCCcccCCCCCHHHHHHHHHHHHhc--cCCCceEE--ehHHhhhc
Confidence 799999999999754 2111 3344445542 2233778999999999988863 21122333 3333332
Q ss_pred --CChh--HHHHHHHHHHhcCC-c-EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhh
Q 014895 341 --AGPT--EVQWHAKARINAGA-N-FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMA 392 (416)
Q Consensus 341 --AGPR--EAllHAiiRkNyGc-T-HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~ 392 (416)
.||. =..+-.+ ++.|.- . .||+|-|-.--- -.=+++++|++.+
T Consensus 78 ~~~~~~yT~~tl~~l-~~~~p~~~~~~iiG~D~l~~l--------~~W~~~~~i~~~~ 126 (174)
T PRK08887 78 APDESVTTYALLTRL-QELYPEADLTFVIGPDNFLKF--------AKFYKADEITQRW 126 (174)
T ss_pred cCCCCcchHHHHHHH-HHHCCCCeEEEEEccchHHHH--------HHhCCHHHHHhhC
Confidence 3332 1123333 333532 2 278898854422 2223467777654
No 58
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=75.00 E-value=2.1 Score=43.22 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhcC-CCeEEEe-ecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCC
Q 014895 241 LSPQQLRKEFDNRQ-ADAIFAF-QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDV 306 (416)
Q Consensus 241 ~tP~e~R~~f~~rg-w~~VvaF-QTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDi 306 (416)
.|++|+|+...+.. -..-+|| =|=.=+|+||..|++.|.+.+. . ....++.||.- -..++|+
T Consensus 5 ~~~~~l~~~~~~~~~~g~~ig~VpTmG~LH~GH~~LI~~a~~~a~-~--vVvTffvnP~q-f~~~ed~ 68 (282)
T TIGR00018 5 ETIPLLRQYIRQLRMEGKTVGFVPTMGNLHDGHMSLIDRAVAEND-V--VVVSIFVNPMQ-FGPNEDL 68 (282)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHhCC-e--EEEEecCChHH-hCCcccc
Confidence 47889998875411 1223444 2322299999999987765331 1 12357888886 3334553
No 59
>PRK07143 hypothetical protein; Provisional
Probab=71.05 E-value=19 Score=36.27 Aligned_cols=100 Identities=16% Similarity=0.235 Sum_probs=56.9
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCC-eEEEccccCC-CCCC-CCChHHHHHHHHHHHHcCcCCCCceEEEe
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNP-ILLLHPLGGF-TKAD-DVPLDVRMEQHSKVLEDGVLDPETTIVSI 333 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~-~lLl~PlvG~-tK~d-Dip~~vR~r~y~~~l~~~y~p~~~~~l~i 333 (416)
.|+++=.-+-+|+||..|++.|. +.+..-. ..+=||..-. .++. -.+.+.|.+..+. +--+. ++ +
T Consensus 17 ~vvaiG~FDGvH~GHq~Ll~~a~----~~~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~------~Gvd~-~~-~ 84 (279)
T PRK07143 17 PTFVLGGFESFHLGHLELFKKAK----ESNDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLAN------LGFKN-II-L 84 (279)
T ss_pred eEEEEccCCcCCHHHHHHHHHHH----HCCCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHH------CCCCE-EE-E
Confidence 67777799999999999998664 3432111 1222333110 1111 3455667665442 11232 33 5
Q ss_pred CCCC--cCCCChhHHHHHHHHHHhcCCcEEEecCCCC-CCC
Q 014895 334 FPSP--MHYAGPTEVQWHAKARINAGANFYIVGRDPA-GMG 371 (416)
Q Consensus 334 lP~~--mryAGPREAllHAiiRkNyGcTHfIVGRDHA-GvG 371 (416)
+|.+ +.--.|.|=+= -++ + +++.+++||.|+. |=+
T Consensus 85 ~~F~~~~a~ls~e~Fi~-~ll-~-l~~~~iVvG~Df~FG~~ 122 (279)
T PRK07143 85 LDFNEELQNLSGNDFIE-KLT-K-NQVSFFVVGKDFRFGKN 122 (279)
T ss_pred eCCCHHHhCCCHHHHHH-HHH-h-cCCCEEEECCCcccCCC
Confidence 6754 44456655443 354 4 9999999999987 543
No 60
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=66.68 E-value=12 Score=31.27 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred cCCCCchhHHHHHHHHH
Q 014895 263 LRNPIHNGHALLMNDTR 279 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~ 279 (416)
+-||+|.||..+++.+.
T Consensus 7 ~Fdp~H~GH~~l~~~a~ 23 (105)
T cd02156 7 EPGYLHIGHAKLICRAK 23 (105)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 45999999999987653
No 61
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=63.90 E-value=11 Score=39.55 Aligned_cols=94 Identities=21% Similarity=0.401 Sum_probs=28.8
Q ss_pred EEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCC---CCChHHHHHHHHHHHHcCcCCCCceEEEeC
Q 014895 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKAD---DVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (416)
Q Consensus 258 VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~d---Dip~~vR~r~y~~~l~~~y~p~~~~~l~il 334 (416)
|+| ==||+|+||.|+++.+.+ ..+ ++.+++-.-+..++.| -++..+|-++ .+..| .| .|+ =+
T Consensus 6 IIa--EYNPFHnGH~y~i~~~k~---~~~--ad~ii~vMSGnFvQRGEPAi~dKw~RA~~---AL~~G---aD-LVi-EL 70 (388)
T PF05636_consen 6 IIA--EYNPFHNGHLYQIEQAKK---ITG--ADVIIAVMSGNFVQRGEPAIIDKWTRAEM---ALKNG---AD-LVI-EL 70 (388)
T ss_dssp -E-----TT--HHHHHHHHHHH------T--SSEEEEEE--TTSBTSSB-SS-HHHHHHH---HHHHT----S-EEE-E-
T ss_pred eEE--eECCccHHHHHHHHHHhc---cCC--CCEEEEEECCCcccCCCeeeCCHHHHHHH---HHHcC---CC-EEE-EC
Confidence 445 579999999999976643 122 3444443333344444 4788888875 34444 34 334 34
Q ss_pred C------CCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCC
Q 014895 335 P------SPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMG 371 (416)
Q Consensus 335 P------~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG 371 (416)
| .+-.||---=.+++ ..||+++.+|-++..+.
T Consensus 71 P~~~a~qsA~~FA~gaV~lL~-----~lgvd~l~FGsE~~~~~ 108 (388)
T PF05636_consen 71 PVVYALQSAEYFARGAVSLLN-----ALGVDYLSFGSESGDIE 108 (388)
T ss_dssp --G----------------------------------------
T ss_pred CCccccccccccccccccccc-----ccccccccccccccccc
Confidence 5 34455533333444 56999999999987775
No 62
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=62.45 E-value=12 Score=37.84 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHh--cCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHH
Q 014895 241 LSPQQLRKEFDN--RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVR 311 (416)
Q Consensus 241 ~tP~e~R~~f~~--rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR 311 (416)
.|++|+|+...+ +.-++|--+=|=.-+|-||..|++.|.+ +.......+|+||+=.. ..+|+...-|
T Consensus 5 ~~i~el~~~~~~~~~~~~~igfVPTMGaLHeGHlsLi~~A~~---~~d~vVVSIFVNP~QF~-~~eD~~~YPR 73 (280)
T PF02569_consen 5 RTISELREWIRAWRKAGKTIGFVPTMGALHEGHLSLIRRARA---ENDVVVVSIFVNPTQFG-PNEDFDKYPR 73 (280)
T ss_dssp -SHHHHHHHHHHHHHTTSSEEEEEE-SS--HHHHHHHHHHHH---HSSEEEEEE---GGGSS-TTSHTTTS--
T ss_pred ccHHHHHHHHHHHHHcCCeEEEECCCchhhHHHHHHHHHHHh---CCCEEEEEECcCcccCC-CcchhhhCCC
Confidence 478899888863 2335565556999999999999997753 32222346899998553 3456554443
No 63
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=59.76 E-value=6.6 Score=39.49 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHh---cCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC-----hHHHH
Q 014895 241 LSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP-----LDVRM 312 (416)
Q Consensus 241 ~tP~e~R~~f~~---rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip-----~~vR~ 312 (416)
.|++|+|+..+. .| ++|...=|=.=+|+||..|++.|.+.+ .. ....++.||.- -..++|++ .+-+.
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~ig~V~TmG~LH~GH~~LI~~a~~~a-~~--vVvtf~~nP~q-f~~~ed~~~y~~t~e~d~ 79 (277)
T cd00560 5 TTIAELRAWLRNWRAQG-KTIGFVPTMGALHEGHLSLVRRARAEN-DV--VVVSIFVNPLQ-FGPNEDLDRYPRTLEADL 79 (277)
T ss_pred ccHHHHHHHHHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHhC-CE--EEEEecCChhh-cCCcccccccCCCHHHHH
Confidence 478888888753 22 234333343339999999998776533 11 12458888886 23334533 23333
Q ss_pred HHHHHHHHcCcCCCCceEEEeCC-CCcCCCChhHHHHHHHHHHhcCCcEEEecC
Q 014895 313 EQHSKVLEDGVLDPETTIVSIFP-SPMHYAGPTEVQWHAKARINAGANFYIVGR 365 (416)
Q Consensus 313 r~y~~~l~~~y~p~~~~~l~ilP-~~mryAGPREAllHAiiRkNyGcTHfIVGR 365 (416)
+-++. .| -+ . + ..| .+-.|+..- . .++-.-.++.+.++|.
T Consensus 80 ~ll~~---~G---vD-~-v-F~p~~~~m~p~~f---~-~~~v~~~~~~~il~G~ 120 (277)
T cd00560 80 ALLEE---AG---VD-L-L-FAPSVEEMYPEGL---F-STFVDVGPLSEVLEGA 120 (277)
T ss_pred HHHHH---CC---CC-E-E-ECCCHHHcCCCCC---c-eEEEecCCCceEEecC
Confidence 33222 11 12 2 2 445 233343221 1 2333457899999998
No 64
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=57.56 E-value=7 Score=39.33 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHh---cCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEcccc
Q 014895 241 LSPQQLRKEFDN---RQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLG 298 (416)
Q Consensus 241 ~tP~e~R~~f~~---rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Plv 298 (416)
.|++|+|+.+.+ .|-+-.++.---| +|+||..|++.+.+.+. . ....++.||.-
T Consensus 5 ~~~~~l~~~~~~~~~~~~~i~~v~tmG~-lH~GH~~Li~~a~~~a~-~--vVvTf~~~P~q 61 (281)
T PRK00380 5 TTIAELRAALRRWRREGKRIGLVPTMGA-LHEGHLSLVREARAEAD-I--VVVSIFVNPLQ 61 (281)
T ss_pred ecHHHHHHHHHHHHHcCCeEEEEEccCc-eeHHHHHHHHHHHHhCC-E--EEEeCCCCHHH
Confidence 468888887753 2322222222344 99999999987765331 1 12346778875
No 65
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=57.10 E-value=11 Score=41.21 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCC
Q 014895 241 LSPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVP 307 (416)
Q Consensus 241 ~tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip 307 (416)
.|++|+|+...+..-++|.-+=|=.=+|.||..|++.|.+. .......+|+||+=. ..++|+.
T Consensus 5 ~~~~~l~~~~~~~~~~~ig~VPTMG~LH~GHlsLi~~A~~~---~d~vVvSIFVNP~QF-~~~eD~~ 67 (512)
T PRK13477 5 RTVAGLRAWLRQQRSETIGFVPTMGALHQGHLSLIRRARQE---NDVVLVSIFVNPLQF-GPNEDLE 67 (512)
T ss_pred ecHHHHHHHHHHhcCCcEEEECCCcchhHHHHHHHHHHHHh---CCEEEEEEccCcccC-CCchhhh
Confidence 47899999987522236666669999999999999876542 111224678888743 3344443
No 66
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=55.84 E-value=24 Score=29.75 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=44.4
Q ss_pred EEEEeeEEEecCCCCCCCcccCCCCHHHHHHHHHhcCCCeEEEeecCCCCch------hHHHHHHHHHHHHHHcCCCCCe
Q 014895 218 WLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDNRQADAIFAFQLRNPIHN------GHALLMNDTRRRLLEMGYKNPI 291 (416)
Q Consensus 218 ~~vgG~i~~l~~~~~~~~f~~~r~tP~e~R~~f~~rgw~~VvaFQTRNPlHR------aHE~l~r~a~~~ale~~~~~~~ 291 (416)
+||+|+++++. ++ -+..-.+.-+.+.++|.. |+ ||.+. ..+.-++..++.+. .||.
T Consensus 1 iYIaGPmtG~~------~~--N~~~f~~~a~~L~~~G~~-vv-----nPa~~~~~~~~~~~~ym~~~l~~L~----~cD~ 62 (92)
T PF14359_consen 1 IYIAGPMTGLP------DY--NRPAFNAAAKRLRAKGYE-VV-----NPAELGIPEGLSWEEYMRICLAMLS----DCDA 62 (92)
T ss_pred CeEeCCcCCCc------ch--HHHHHHHHHHHHHHCCCE-Ee-----CchhhCCCCCCCHHHHHHHHHHHHH----hCCE
Confidence 48999999853 12 123455666777788843 32 77777 44555565544333 3577
Q ss_pred EEEccccCCCCCCCCChHH
Q 014895 292 LLLHPLGGFTKADDVPLDV 310 (416)
Q Consensus 292 lLl~PlvG~tK~dDip~~v 310 (416)
+.+ +-||..+-.-..|.
T Consensus 63 i~~--l~gWe~S~GA~~E~ 79 (92)
T PF14359_consen 63 IYM--LPGWENSRGARLEH 79 (92)
T ss_pred EEE--cCCcccCcchHHHH
Confidence 777 45888877654443
No 67
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=55.00 E-value=62 Score=33.93 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=51.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC---CChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD---VPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dD---ip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
-=||.|+||+++++.|.+ . ++++..+.---+-.++-|. ++...|.+ - .+..| -+ + ++|++.-
T Consensus 9 eyNPfHnGH~y~i~~Ar~----~-~~~d~~i~~msgdf~qRgepai~~k~~r~~--~-aL~~g---~D---~-VIelP~~ 73 (358)
T COG1323 9 EYNPFHNGHQYHINKARE----E-FKGDEIIAVMSGDFTQRGEPAIGHKWERKK--M-ALEGG---AD---L-VIELPLE 73 (358)
T ss_pred ecCcccccHHHHHHHHHH----h-ccCCceEEeeecchhhcCCCccccHHHHHh--h-hhhcC---ce---E-EEEcceE
Confidence 579999999999976643 1 1223333322222223222 34444433 2 22211 11 2 3444444
Q ss_pred CCC---hhHHHHHHHHHHhcCCcEEEecCCCCCCC
Q 014895 340 YAG---PTEVQWHAKARINAGANFYIVGRDPAGMG 371 (416)
Q Consensus 340 yAG---PREAllHAiiRkNyGcTHfIVGRDHAGvG 371 (416)
|+| |-=|.--..+-.+.||+.+++|-.+-|+-
T Consensus 74 ~s~q~a~~fa~~av~il~~l~~~~i~fgse~~~i~ 108 (358)
T COG1323 74 RSGQGAPYFATRAVRILNALGGDDIAFGSPPMGIM 108 (358)
T ss_pred EecCCCchhhHHHHHHHHhcCCCeEEEeCCCCchH
Confidence 443 33344456778899999999999887774
No 68
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=51.50 E-value=24 Score=35.77 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCHHHHHHHHH--hcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHH
Q 014895 241 LSPQQLRKEFD--NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDV 310 (416)
Q Consensus 241 ~tP~e~R~~f~--~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~v 310 (416)
.|.+++|+..+ ++.-++|.-.=|=+=+|.||-.|++.|.+ +.......+|+||+=- .-.+|++..-
T Consensus 5 ~ti~~lr~~~~~~r~~gk~Vg~VPTMG~LH~GHlsLVr~A~~---~~d~VVVSIFVNP~QF-g~~EDl~~YP 72 (285)
T COG0414 5 TTIAELRQAIKALRKEGKRVGLVPTMGNLHEGHLSLVRRAKK---ENDVVVVSIFVNPLQF-GPNEDLDRYP 72 (285)
T ss_pred ehHHHHHHHHHHHHHcCCEEEEEcCCcccchHHHHHHHHHhh---cCCeEEEEEEeChhhc-CCchhhhhCC
Confidence 47888887765 11223455555999999999999987643 3222234688888732 2345554433
No 69
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=50.30 E-value=83 Score=28.63 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=52.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccC------CCCCCCCChHHHHHHHHHHHHcCcCCCCceE
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGG------FTKADDVPLDVRMEQHSKVLEDGVLDPETTI 330 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG------~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~ 330 (416)
+|+..=+-+|+|.||..+++.| .++|. ++-|.+ -+.. .+..--++.+.|+++.+++ + |. +.++
T Consensus 4 rV~~~G~FDl~H~GHi~~L~~A----~~lg~-~d~LiV-gV~sD~~~~~~k~~pi~~~~eR~~~l~~~-~--~V--d~Vi 72 (150)
T cd02174 4 RVYVDGCFDLFHYGHANALRQA----KKLGP-NDYLIV-GVHSDEEIHKHKGPPVMTEEERYEAVRHC-K--WV--DEVV 72 (150)
T ss_pred EEEEeCccCCCCHHHHHHHHHH----HHhCC-CCEEEE-EEecCHHHhhcCCCCcCCHHHHHHHHHhc-C--CC--CeEE
Confidence 4554448999999999998765 34430 021222 1111 0112458999999988865 3 55 4444
Q ss_pred EEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 331 VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 331 l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
+ .-|. +..+. +-+.++|+.++.|-|..
T Consensus 73 ~-~~~~-----~~~~~-----~i~~~~~d~vv~G~d~~ 99 (150)
T cd02174 73 E-GAPY-----VTTPE-----FLDKYKCDYVAHGDDIY 99 (150)
T ss_pred E-CCCC-----CChHH-----HHHHhCCCEEEECCCCC
Confidence 3 1222 11122 23478999999998865
No 70
>PLN02660 pantoate--beta-alanine ligase
Probab=49.14 E-value=16 Score=36.94 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHh-cCCCeEEEee-cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCC
Q 014895 241 LSPQQLRKEFDN-RQADAIFAFQ-LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADD 305 (416)
Q Consensus 241 ~tP~e~R~~f~~-rgw~~VvaFQ-TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dD 305 (416)
.|++|+|+...+ +.-.+-+||= |=.=+|+||..|++.+.+.+. .....++.||.- -...+|
T Consensus 4 ~~~~~lr~~~~~~~~~g~~igfVpTmG~LH~GH~~LI~~a~~~a~---~vVvTffvnP~q-f~~~ed 66 (284)
T PLN02660 4 RDKAAMRAWSRAQRAQGKRIALVPTMGYLHEGHLSLVRAARARAD---VVVVSIYVNPGQ-FAPGED 66 (284)
T ss_pred ccHHHHHHHHHHHHHcCCeEEEEEcCchhhHHHHHHHHHHHHhCC---EEEEEEeCChHH-cCCccc
Confidence 478889888753 1112233332 433399999999987755322 112468899986 333344
No 71
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=48.13 E-value=33 Score=26.35 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=18.8
Q ss_pred EecChHHHhhcCCC---------CeEEEeCCCCCEEEEEEec
Q 014895 151 LAIDDETKERIGST---------TNVALLGPTGDLIGILRSI 183 (416)
Q Consensus 151 L~V~~e~a~~L~~G---------~~vaL~d~eG~~vAiL~V~ 183 (416)
++++++++..+.-| +.++..+++|+++|+++-.
T Consensus 4 ~~ls~~ea~~l~~Gr~l~~~~~~g~~aa~~pdG~lvAL~~~~ 45 (56)
T PF09142_consen 4 RELSAEEARDLRHGRRLPAAGPPGPVAAFAPDGRLVALLEER 45 (56)
T ss_dssp EE--HHHHHHHHTT---B-----S-EEEE-TTS-EEEEEEEE
T ss_pred eECCHHHHHHHhCCCccCCCCCCceEEEECCCCcEEEEEEcc
Confidence 45666666665433 4566678999999999644
No 72
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=45.64 E-value=3.2e+02 Score=27.14 Aligned_cols=104 Identities=14% Similarity=0.054 Sum_probs=68.2
Q ss_pred HHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcE
Q 014895 281 RLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANF 360 (416)
Q Consensus 281 ~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTH 360 (416)
.+++.| .+++++.=-.| .---++.+-|.+-.+.+++ ....+..++..+ . . +-+|++=.+...+..||.-
T Consensus 29 ~l~~~G--v~gi~v~GstG--E~~~Ls~eEr~~l~~~~~~--~~~~~~pvi~gv---~-~-~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 29 WLLSYG--AAALFAAGGTG--EFFSLTPDEYAQVVRAAVE--ETAGRVPVLAGA---G-Y-GTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHcC--CCEEEECcCCc--CcccCCHHHHHHHHHHHHH--HhCCCCCEEEec---C-C-CHHHHHHHHHHHHHhCCCE
Confidence 445555 56787743333 4455888999999998887 343332233222 2 2 7899999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeee
Q 014895 361 YIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIV 409 (416)
Q Consensus 361 fIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~ 409 (416)
+++-. +||.+.....+++.|... .+-.+.+.++|+
T Consensus 98 v~~~p------------P~y~~~~~~~i~~~f~~v--~~~~~~pi~lYn 132 (289)
T cd00951 98 ILLLP------------PYLTEAPQEGLYAHVEAV--CKSTDLGVIVYN 132 (289)
T ss_pred EEECC------------CCCCCCCHHHHHHHHHHH--HhcCCCCEEEEe
Confidence 99822 255444556777777533 233567888887
No 73
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=43.70 E-value=1.1e+02 Score=31.83 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=54.6
Q ss_pred CeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCe--EEEcccc--C--CCCCCCCChHHHHHHHHHHHHcCcCCCCce
Q 014895 256 DAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPI--LLLHPLG--G--FTKADDVPLDVRMEQHSKVLEDGVLDPETT 329 (416)
Q Consensus 256 ~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~--lLl~Plv--G--~tK~dDip~~vR~r~y~~~l~~~y~p~~~~ 329 (416)
.+|++-=+-+-+|.||..++++|. +.| +- +-+||-- - ...+ -.+.+-|++..+.+ ++. +.+
T Consensus 12 ~~v~~~G~FD~vH~GH~~~L~qAk----~~g---~~Livgv~~d~~i~~~K~~p-i~~~eeR~~~l~~~---~~V--D~V 78 (353)
T PTZ00308 12 IRVWVDGCFDMLHFGHANALRQAR----ALG---DELFVGCHSDEEIMRNKGPP-VMHQEERYEALRAC---KWV--DEV 78 (353)
T ss_pred EEEEEEeecccCCHHHHHHHHHHH----HhC---CEEEEEeCCHHHHhhcCCCC-CCCHHHHHHHHHhc---CCc--cEE
Confidence 567765689999999999998764 444 22 3344421 0 0123 67788888876643 123 333
Q ss_pred EEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCC
Q 014895 330 IVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPA 368 (416)
Q Consensus 330 ~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHA 368 (416)
++ .+|....++ .+ +-++|.++++|-|..
T Consensus 79 v~-~~p~~~~~~---------fI-~~l~~d~vv~GdD~~ 106 (353)
T PTZ00308 79 VE-GYPYTTRLE---------DL-ERLECDFVVHGDDIS 106 (353)
T ss_pred EE-CCCCCchHH---------HH-HHhCCCEEEECCCCC
Confidence 33 256443222 22 779999999999976
No 74
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=42.40 E-value=18 Score=32.51 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=44.0
Q ss_pred cCCCceeeCccchHHHHHHHhcCcCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEe
Q 014895 91 ESMPKVKLTKIDLEWVHVVSEGWASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALL 170 (416)
Q Consensus 91 ~~LP~i~L~~~~l~DlelL~~G~fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~wpiPItL~V~~e~a~~L~~G~~vaL~ 170 (416)
+.+....+..++++-|-.=.+. ==||+.++|+++- .+.|.+ ++.+.-|++|..+.+.
T Consensus 60 ~kve~a~ie~~~~q~lY~dg~~-----~~FMD~etyeq~~--------------v~~~~~----~d~~~~l~eg~~v~v~ 116 (131)
T COG0231 60 DKVEVAIVERKTAQYLYIDGDF-----YVFMDLETYEQYE--------------LPKDQI----GDAAKFLKEGMEVEVL 116 (131)
T ss_pred CEEEEeEEeeeeEEEEEcCCCe-----EEEccCCCceEEE--------------ecchhh----hhHHHhcCCCCEEEEE
Confidence 4455666777666511111111 1399999999985 233432 6778889999999887
Q ss_pred CCCCCEEEE
Q 014895 171 GPTGDLIGI 179 (416)
Q Consensus 171 d~eG~~vAi 179 (416)
-.+|+++++
T Consensus 117 ~~~g~~i~v 125 (131)
T COG0231 117 LYNGEPIAV 125 (131)
T ss_pred EECCEEEEE
Confidence 789999886
No 75
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=38.79 E-value=3.1e+02 Score=27.82 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=77.4
Q ss_pred CCcEEEE-eeEEEecCCCCCCCcccCCCCHHHHHHHHH-------hcCCCeEEEeecCCCCchh--HHHHHHHHHHHHHH
Q 014895 215 AGNWLVG-GDLEVLKPIKYNDGLDHYRLSPQQLRKEFD-------NRQADAIFAFQLRNPIHNG--HALLMNDTRRRLLE 284 (416)
Q Consensus 215 ~g~~~vg-G~i~~l~~~~~~~~f~~~r~tP~e~R~~f~-------~rgw~~VvaFQTRNPlHRa--HE~l~r~a~~~ale 284 (416)
.|+|.|. |.+.-...+.. +.--|+-++.|..+.++ ..+-..|++ +..|.+++ ||.|. ++..
T Consensus 120 ~g~~iv~LG~F~p~~~~d~--~p~~y~dS~~~~~~i~~aL~~f~~~~~~~cis~--~~r~~~~~sv~~~L~-----aL~~ 190 (282)
T PF12818_consen 120 PGQYIVCLGDFEPTPGPDT--PPYTYRDSGLEQNKILQALQQFYSTLESPCISG--SIRPPGPASVKEHLL-----ALCH 190 (282)
T ss_pred CCCEEEEecCCcccCCCCC--CCcccccCHHHHHHHHHHHHHHHHhcCCCcEEe--ecCCCCchhHHHHHH-----HhcC
Confidence 5665554 66665442221 12257789998887654 233346888 66777665 55553 1222
Q ss_pred cCCCCCeEEEcccc----CCCCCCCCChHHHHHHHHHHHHcCcCCCC-ceEEEeCCCCcC----CC--ChhHHHHHHHHH
Q 014895 285 MGYKNPILLLHPLG----GFTKADDVPLDVRMEQHSKVLEDGVLDPE-TTIVSIFPSPMH----YA--GPTEVQWHAKAR 353 (416)
Q Consensus 285 ~~~~~~~lLl~Plv----G~tK~dDip~~vR~r~y~~~l~~~y~p~~-~~~l~ilP~~mr----yA--GPREAllHAiiR 353 (416)
-+ ..-+.+.-|. ...++ .+.+- ..+|+.++++.+|..- ..++-++...-. -+ +|+|++-- +.
T Consensus 191 ~~--G~~l~lS~LP~~i~~~L~~--~~~~~-~~~~~~~i~~~FLNv~~~~vfl~V~n~~~~~~~~~~~~~l~~L~~--~c 263 (282)
T PF12818_consen 191 PG--GARLDLSALPQEIVSQLKR--SPPEN-REHNEEIIKQHFLNVYCSVVFLVVSNTPIDTNTDQGFGPLDALKR--AC 263 (282)
T ss_pred CC--ceEEEhhcCCHHHHHHhcc--CCchh-HHHHHHHHHhhhhccccceEEEEEecCCCCCcccccccHHHHHHH--HH
Confidence 11 1334444441 11111 22222 3348888877666544 233435554442 22 58887765 46
Q ss_pred HhcCCcEEEecCCCCCCC
Q 014895 354 INAGANFYIVGRDPAGMG 371 (416)
Q Consensus 354 kNyGcTHfIVGRDHAGvG 371 (416)
+.|||+..|+||-.-..|
T Consensus 264 ~~~gc~~~iLG~t~~~~G 281 (282)
T PF12818_consen 264 RLCGCPVHILGRTCPEPG 281 (282)
T ss_pred HHCCCCEEEEeeeccCCC
Confidence 789999999999554443
No 76
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=38.33 E-value=3.9e+02 Score=26.09 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred HHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCc
Q 014895 280 RRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (416)
Q Consensus 280 ~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcT 359 (416)
+.+++.| .+++++.=..| .---+..+-|.+-.+.+.+ ....+..++..+-. ...+|++-.|..++..|++
T Consensus 28 ~~l~~~G--v~gl~v~GstG--E~~~lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~----~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 28 EFQIENG--TDGLVVCGTTG--ESPTLSDEEHEAVIEAVVE--AVNGRVPVIAGTGS----NNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred HHHHHcC--CCEEEECCCCc--chhhCCHHHHHHHHHHHHH--HhCCCCcEEeccCC----ccHHHHHHHHHHHHHcCCC
Confidence 3445555 56788764444 4466888999999998886 34333223222211 2458999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeeee
Q 014895 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIVH 410 (416)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~~ 410 (416)
.+++..- .||.+. ...+++.|....+ -...+.++|+.
T Consensus 98 ~v~~~~P-----------~~~~~~-~~~l~~~~~~ia~--~~~~pi~lYn~ 134 (284)
T cd00950 98 AALVVTP-----------YYNKPS-QEGLYAHFKAIAE--ATDLPVILYNV 134 (284)
T ss_pred EEEEccc-----------ccCCCC-HHHHHHHHHHHHh--cCCCCEEEEEC
Confidence 9998741 144443 4667776643322 23566667764
No 77
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=37.74 E-value=66 Score=27.48 Aligned_cols=34 Identities=24% Similarity=0.142 Sum_probs=27.2
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.|....|++.+...+++
T Consensus 35 v~inp~dA~~~gi~~Gd~V~v~s~~G~~~~~v~v~~ 70 (130)
T cd02781 35 AEINPETAAKLGIADGDWVWVETPRGRARQKARLTP 70 (130)
T ss_pred EEECHHHHHHcCCCCCCEEEEECCCCEEEEEEEECC
Confidence 456666665 4699999999998999888887766
No 78
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=37.61 E-value=56 Score=39.32 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=60.9
Q ss_pred cCCCCCCCChhhhhcccccCceecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCC-CCCEEEEEEeccccccCHHH
Q 014895 114 ASPLRGFMRENEYLQSLHFNCLRMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGP-TGDLIGILRSIEIYKHNKEE 192 (416)
Q Consensus 114 fSPL~GFM~~~dy~sVl~~~~mRL~dG~~~~wpiPItL~V~~e~a~~L~~G~~vaL~d~-eG~~vAiL~V~eiy~~Dk~~ 192 (416)
|.+++.+++.++|.+|- |. ..-+.+.|++++.+.++.++...|+++ +|++...+.-.|+|. +
T Consensus 377 f~~yd~~~~~e~y~tv~---------~q----N~N~SV~VtDeFM~aVe~d~~w~L~~p~~gkv~ktV~AReLw~----k 439 (1220)
T PRK07562 377 FPTYDTDWDSEAYLTVS---------GQ----NSNNSVRVTDEFLRAVENDGDWNLTARTDGKVAKTLKARDLWE----K 439 (1220)
T ss_pred ccccccccccchhcccc---------cc----cccceeccCHHHHHHHHCCCCeeeeccCCCceeeEeeHHHHHH----H
Confidence 77899999999999985 11 224567889999999999999999764 689999999999993 4
Q ss_pred HHHHhhCCCCCCCcchh
Q 014895 193 RIARTWGTTAAGLPYVE 209 (416)
Q Consensus 193 ea~~VfGT~d~~HPgV~ 209 (416)
.++..|.|.| ||+.
T Consensus 440 I~~aawetGd---PgI~ 453 (1220)
T PRK07562 440 IGYAAWASAD---PGLQ 453 (1220)
T ss_pred HHHHHHHHCC---ceEE
Confidence 6777777666 7775
No 79
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.33 E-value=4e+02 Score=26.64 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=66.1
Q ss_pred HHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcE
Q 014895 281 RLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANF 360 (416)
Q Consensus 281 ~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTH 360 (416)
.+++.| ++++++.=..| .---++.+-|.+..+.+.+ ....+.-+++.+ . .+-+|++-.+.-.+..|++.
T Consensus 36 ~l~~~G--v~Gi~~~GstG--E~~~Lt~eEr~~~~~~~~~--~~~~~~pvi~gv--~---~~t~~~i~~~~~a~~~Gada 104 (303)
T PRK03620 36 WLAPYG--AAALFAAGGTG--EFFSLTPDEYSQVVRAAVE--TTAGRVPVIAGA--G---GGTAQAIEYAQAAERAGADG 104 (303)
T ss_pred HHHHcC--CCEEEECcCCc--CcccCCHHHHHHHHHHHHH--HhCCCCcEEEec--C---CCHHHHHHHHHHHHHhCCCE
Confidence 344554 56788743333 4455788999999998886 343332233232 2 27799999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeee
Q 014895 361 YIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIV 409 (416)
Q Consensus 361 fIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~ 409 (416)
+++-. +||-...-+.+.+.|.... +-.+++.++|+
T Consensus 105 v~~~p------------P~y~~~~~~~i~~~f~~va--~~~~lpi~lYn 139 (303)
T PRK03620 105 ILLLP------------PYLTEAPQEGLAAHVEAVC--KSTDLGVIVYN 139 (303)
T ss_pred EEECC------------CCCCCCCHHHHHHHHHHHH--HhCCCCEEEEc
Confidence 99822 2444434466776664321 22456777787
No 80
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.95 E-value=63 Score=27.28 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=27.6
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.|....|++.+...+++
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~~~~G~v~~~v~~~~ 68 (106)
T cd02789 33 CEINPEDYKLLGKPEGDKVKVTSEFGEVVVFAKENE 68 (106)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 456777766 5799999999988898888888776
No 81
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=36.91 E-value=52 Score=27.99 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=28.0
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~ei 185 (416)
+.++.++|+ +|+.||.|.|.+..|++.+...+++-
T Consensus 32 v~i~p~~A~~~gi~~Gd~V~v~s~~g~i~~~a~~~~~ 68 (121)
T cd02794 32 VWINPLDAAARGIKDGDRVLVFNDRGKVIRPVKVTER 68 (121)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCC
Confidence 456666665 57999999999999999988888763
No 82
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=36.78 E-value=3.8e+02 Score=26.52 Aligned_cols=105 Identities=13% Similarity=0.016 Sum_probs=67.3
Q ss_pred HHHH-cCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCc
Q 014895 281 RLLE-MGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (416)
Q Consensus 281 ~ale-~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcT 359 (416)
.+++ .| .+++++.=..| .---++.+-|.+-.+.+++ ....+-.+++.+. -.+-+|++-.|.-.+..||+
T Consensus 32 ~l~~~~G--v~gi~v~GstG--E~~~Ls~eEr~~~~~~~~~--~~~~~~~viagvg----~~~t~~ai~~a~~a~~~Gad 101 (293)
T PRK04147 32 FNIEKQG--IDGLYVGGSTG--EAFLLSTEEKKQVLEIVAE--EAKGKVKLIAQVG----SVNTAEAQELAKYATELGYD 101 (293)
T ss_pred HHHhcCC--CCEEEECCCcc--ccccCCHHHHHHHHHHHHH--HhCCCCCEEecCC----CCCHHHHHHHHHHHHHcCCC
Confidence 3455 54 56788744433 3445788999999998886 3433222332221 24679999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeee
Q 014895 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIV 409 (416)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~ 409 (416)
.+++-. . ||-+.....+++.|... .+-++++.++|+
T Consensus 102 ~v~v~~-----P-------~y~~~~~~~l~~~f~~v--a~a~~lPv~iYn 137 (293)
T PRK04147 102 AISAVT-----P-------FYYPFSFEEICDYYREI--IDSADNPMIVYN 137 (293)
T ss_pred EEEEeC-----C-------cCCCCCHHHHHHHHHHH--HHhCCCCEEEEe
Confidence 999863 2 44333446677766432 233567788886
No 83
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=36.10 E-value=1e+02 Score=28.00 Aligned_cols=83 Identities=14% Similarity=0.120 Sum_probs=50.7
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccc-----cCCCC---CCCCChHHHHHHHHHHHHcCcCCCCceEEEeC
Q 014895 263 LRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPL-----GGFTK---ADDVPLDVRMEQHSKVLEDGVLDPETTIVSIF 334 (416)
Q Consensus 263 TRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~Pl-----vG~tK---~dDip~~vR~r~y~~~l~~~y~p~~~~~l~il 334 (416)
|-+|+|.||..++++| .++| +-|.+ -+ +-..| .--++.+.|+...++ ++ +. +.+++ .-
T Consensus 10 ~FD~~H~GHi~~L~~A----~~lg---d~liV-gV~~D~~~~~~K~~~~pi~~~~eR~~~v~~-~~--~V--d~V~v-~~ 75 (152)
T cd02173 10 AFDLFHIGHIEFLEKA----RELG---DYLIV-GVHDDQTVNEYKGSNYPIMNLHERVLSVLA-CR--YV--DEVVI-GA 75 (152)
T ss_pred cccCCCHHHHHHHHHH----HHcC---CEEEE-EEeCcHHHHhhcCCCCCCCCHHHHHHHHHh-cC--CC--CEEEE-CC
Confidence 7899999999998765 4555 33322 11 11113 247899999998865 43 55 44444 22
Q ss_pred CCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCC
Q 014895 335 PSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 369 (416)
Q Consensus 335 P~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAG 369 (416)
|. +.. .-+-+-++|+.++.|-|..+
T Consensus 76 ~~-----~~~-----~~~~~~~~~d~vv~G~d~~~ 100 (152)
T cd02173 76 PY-----VIT-----KELIEHFKIDVVVHGKTEET 100 (152)
T ss_pred CC-----cch-----HHHHHHhCCCEEEECCCCcc
Confidence 22 111 12235699999999988654
No 84
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=35.73 E-value=78 Score=27.03 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=29.3
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~eiy 186 (416)
+.++.++|+ +|+.||.|.|....|++.+...+++--
T Consensus 34 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~a~~~~~v 71 (124)
T cd02785 34 VKINPIDAAARGIAHGDLVEVYNDRGSVVCKAKVDDGI 71 (124)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCEEEEEEEECCCc
Confidence 456777766 579999999999999999999887744
No 85
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=35.39 E-value=57 Score=27.28 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=28.8
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~eiy 186 (416)
+.++.++|+ +|+.||.|.|....|++.+.+.+++--
T Consensus 33 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~~~~~i 70 (116)
T cd02786 33 LLIHPADAAARGIADGDLVVVFNDRGSVTLRAKVTDDV 70 (116)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCCC
Confidence 456666665 579999999999999999988887743
No 86
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=34.78 E-value=75 Score=32.28 Aligned_cols=44 Identities=27% Similarity=0.511 Sum_probs=33.2
Q ss_pred eEEEeCC-CCcCCCChhHHHHH-HHHHHhcCCcEEEecCCCCCCCCC
Q 014895 329 TIVSIFP-SPMHYAGPTEVQWH-AKARINAGANFYIVGRDPAGMGHP 373 (416)
Q Consensus 329 ~~l~ilP-~~mryAGPREAllH-AiiRkNyGcTHfIVGRDHAGvG~~ 373 (416)
....+.| +-++|+||.-|--. ++.. +-==|-+|+|.||-|.|.+
T Consensus 46 ~~~~v~PHAGy~ySG~taa~~y~~l~~-~~~~~vVIlGPnHtg~g~~ 91 (279)
T COG1355 46 AIGIVVPHAGYRYSGPTAAHVYSALDE-GEPDTVVILGPNHTGLGSP 91 (279)
T ss_pred ceEEEcCCCCcEecchhHHHHHHHhhc-CCCCEEEEECCCCCCCCCc
Confidence 4444677 89999999988655 5544 4445788999999999964
No 87
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=33.75 E-value=4.9e+02 Score=25.92 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=66.3
Q ss_pred HHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEE
Q 014895 282 LLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFY 361 (416)
Q Consensus 282 ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHf 361 (416)
+++.| .+++++.=..| .---++.+-|.+..+.+++ ....+-.+++.+- -.+-+|++-.|.-++..||..+
T Consensus 30 ~~~~G--v~gi~v~GstG--E~~~Ls~~Er~~l~~~~~~--~~~g~~pvi~gv~----~~~t~~ai~~a~~A~~~Gad~v 99 (294)
T TIGR02313 30 QIEGG--SHAISVGGTSG--EPGSLTLEERKQAIENAID--QIAGRIPFAPGTG----ALNHDETLELTKFAEEAGADAA 99 (294)
T ss_pred HHHcC--CCEEEECccCc--ccccCCHHHHHHHHHHHHH--HhCCCCcEEEECC----cchHHHHHHHHHHHHHcCCCEE
Confidence 34444 56788744433 4455789999999998886 3432222332221 1456899999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEe-eeeeeeee
Q 014895 362 IVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNIL-PFRVGIIV 409 (416)
Q Consensus 362 IVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~-p~~~~~Y~ 409 (416)
++..- ||-+..-+.+++.|.... +-. .++.++|+
T Consensus 100 ~v~pP------------~y~~~~~~~l~~~f~~ia--~a~~~lpv~iYn 134 (294)
T TIGR02313 100 MVIVP------------YYNKPNQEALYDHFAEVA--DAVPDFPIIIYN 134 (294)
T ss_pred EEcCc------------cCCCCCHHHHHHHHHHHH--HhccCCCEEEEe
Confidence 98652 444444477877764321 224 46777775
No 88
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.15 E-value=66 Score=26.70 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=27.2
Q ss_pred ecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 014895 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (416)
Q Consensus 152 ~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~eiy 186 (416)
-++.++|+ +|+.||.|.|....|++.+.+.+++--
T Consensus 38 ~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~i~~~i 74 (116)
T cd02790 38 EINPEDAKRLGIEDGEKVRVSSRRGSVEVRARVTDRV 74 (116)
T ss_pred EECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCCc
Confidence 45666665 569999999999889988888877633
No 89
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.72 E-value=3e+02 Score=27.01 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCc-eEEEeCCCCcCCCChhHHHHHHHHHHhc
Q 014895 278 TRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPET-TIVSIFPSPMHYAGPTEVQWHAKARINA 356 (416)
Q Consensus 278 a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~-~~l~ilP~~mryAGPREAllHAiiRkNy 356 (416)
-++.+++.| .+++++.-..| ..--++.+-|.+-++.+++ ..+.+. ++.++-.. .-+|++=+|...+..
T Consensus 27 ~i~~l~~~G--v~gl~~~GstG--E~~~Lt~~Er~~l~~~~~~--~~~~~~~vi~gv~~~-----st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 27 LIDFLIEAG--VDGLVVLGSTG--EFYSLTDEERKELLEIVVE--AAAGRVPVIAGVGAN-----STEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHTT--SSEEEESSTTT--TGGGS-HHHHHHHHHHHHH--HHTTSSEEEEEEESS-----SHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCEEEECCCCc--ccccCCHHHHHHHHHHHHH--HccCceEEEecCcch-----hHHHHHHHHHHHhhc
Confidence 334455665 56888744433 3445788999999999886 555443 33333222 468999999999999
Q ss_pred CCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeeee
Q 014895 357 GANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIVH 410 (416)
Q Consensus 357 GcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~~ 410 (416)
|+.-+++..- ||....-+.+++.|... ......+.++|+.
T Consensus 96 Gad~v~v~~P------------~~~~~s~~~l~~y~~~i--a~~~~~pi~iYn~ 135 (289)
T PF00701_consen 96 GADAVLVIPP------------YYFKPSQEELIDYFRAI--ADATDLPIIIYNN 135 (289)
T ss_dssp T-SEEEEEES------------TSSSCCHHHHHHHHHHH--HHHSSSEEEEEEB
T ss_pred CceEEEEecc------------ccccchhhHHHHHHHHH--HhhcCCCEEEEEC
Confidence 9999988542 55555666777766432 2445556666764
No 90
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.37 E-value=78 Score=26.57 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=28.3
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~eiy 186 (416)
+.++.++|+ +|+.||.|.+....|++.+.+.+++--
T Consensus 37 v~i~p~dA~~lgi~~Gd~V~v~s~~G~~~~~v~v~~~i 74 (122)
T cd02792 37 VEISPELAAERGIKNGDMVWVSSPRGKIKVKALVTDRV 74 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCceEEEEEEECCCc
Confidence 345666665 569999999999999999999888743
No 91
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.88 E-value=66 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.9
Q ss_pred ecChHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 014895 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (416)
Q Consensus 152 ~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~ei 185 (416)
-++.++|+ +|+.||.|.|.+..|++.+...+++-
T Consensus 38 ~inp~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (120)
T cd00508 38 EIHPEDAARLGIKDGDLVRVSSRRGSVVVRARVTDR 73 (120)
T ss_pred EECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCC
Confidence 45666665 56999999999989998888887763
No 92
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=31.44 E-value=49 Score=27.25 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=25.9
Q ss_pred ecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 152 ~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
-++.++|+ +|+.||.|.|..+.|.+.+...+++
T Consensus 33 ~inp~dA~~~Gi~~Gd~V~v~s~~G~v~~~v~~~~ 67 (110)
T PF01568_consen 33 EINPEDAAKLGIKDGDWVRVSSPRGSVEVRVKVTD 67 (110)
T ss_dssp EEEHHHHHHCT--TTCEEEEEETTEEEEEEEEEET
T ss_pred EEcHHHHHHhcCcCCCEEEEEeccceEeeeeEEec
Confidence 46666665 5789999999999999999998887
No 93
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=31.31 E-value=2.6e+02 Score=27.51 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=57.4
Q ss_pred CCCCEEEEEEeccccccCHHHHHHHhhCCCCCCCcchhhhcccCCcEEEEeeEEEecCCCCCCCcccCCCCHHHHHHHHH
Q 014895 172 PTGDLIGILRSIEIYKHNKEERIARTWGTTAAGLPYVEEVITPAGNWLVGGDLEVLKPIKYNDGLDHYRLSPQQLRKEFD 251 (416)
Q Consensus 172 ~eG~~vAiL~V~eiy~~Dk~~ea~~VfGT~d~~HPgV~~~~~~~g~~~vgG~i~~l~~~~~~~~f~~~r~tP~e~R~~f~ 251 (416)
.+|...-|++|+|.---+-.-.+...||...-++. .-.+|...|+-..+ + .-.++-+.+.
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~-------~~~~wv~~~~apai---------p----~al~l~~~l~ 133 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPT-------AFWLWLGKGAAPAL---------P----EGLKLYQKII 133 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHH-------HHHHHHHcCCCCCC---------H----HHHHHHHHHH
Confidence 46888999999999888888889999984321111 12234333322111 0 1334455667
Q ss_pred hcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCC-CeEEEccc
Q 014895 252 NRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKN-PILLLHPL 297 (416)
Q Consensus 252 ~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~-~~lLl~Pl 297 (416)
++|++-++. -.|..-+| ..|.+.+.+.|+.. +.|++.+.
T Consensus 134 ~~G~~Vf~l-TGR~e~~r------~~T~~nL~~~G~~~~~~LiLR~~ 173 (229)
T TIGR01675 134 ELGIKIFLL-SGRWEELR------NATLDNLINAGFTGWKHLILRGL 173 (229)
T ss_pred HCCCEEEEE-cCCChHHH------HHHHHHHHHcCCCCcCeeeecCC
Confidence 889874444 33543332 22334566777764 56888765
No 94
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=30.93 E-value=75 Score=26.88 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=28.5
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEIY 186 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~eiy 186 (416)
+.++.++|+ +|+.||.|.|..+.|++.+.+.+++--
T Consensus 35 v~in~~dA~~lgi~~Gd~V~v~s~~G~i~~~~~~~~~i 72 (115)
T cd02779 35 IEVNPEDAKREGLKNGDLVEVYNDYGSTTAMAYVTNTV 72 (115)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCEEEEEEEEECCCc
Confidence 345666655 579999999999999999998888743
No 95
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=30.89 E-value=76 Score=25.41 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=25.8
Q ss_pred ecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 152 AIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 152 ~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
-++.++|+ +|+.||+|.|.+..|.+.+.+.+.+
T Consensus 26 ~~~~~da~~lgl~~Gd~v~v~~~~g~~~~~v~~~~ 60 (101)
T cd02775 26 EINPEDAAALGIKDGDLVRVESRRGSVVLRAKVTD 60 (101)
T ss_pred EECHHHHHHcCCCCCCEEEEEcCCcEEEEEEEECC
Confidence 35555555 5799999999998999888887665
No 96
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=30.80 E-value=16 Score=36.08 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=47.6
Q ss_pred ecCCCCeeccceeEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEecccccc------CHHHHHHHhhCCCCCCCcchh
Q 014895 136 RMKDGSIVNMSLPIVLAIDDETKERIGSTTNVALLGPTGDLIGILRSIEIYKH------NKEERIARTWGTTAAGLPYVE 209 (416)
Q Consensus 136 RL~dG~~~~wpiPItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V~eiy~~------Dk~~ea~~VfGT~d~~HPgV~ 209 (416)
||..|-- -+=+.|..+.+..++.|..+.|-+ +|.+++||+. -.++..+++|||+|+. -|+
T Consensus 11 rlkk~Ge-----rFEvlvdP~~a~~~R~g~~vdlee-------vLa~~~Vf~da~KG~~Ase~dL~k~FgTtd~~--eI~ 76 (234)
T COG1500 11 RLKKHGE-----RFEVLVDPNKALEYREGKEVDLEE-------VLATETVFKDASKGEKASEEDLKKAFGTTDPD--EIA 76 (234)
T ss_pred eeccCCe-----eEEEEECHhHHHHHHcCCCCCHHH-------HHhHHHHHHhccccccCCHHHHHHHhCCCCHH--HHH
Confidence 5665543 233456777788899999998864 5778899976 2356789999999933 222
Q ss_pred hhcccCCcEEEEeeEEE
Q 014895 210 EVITPAGNWLVGGDLEV 226 (416)
Q Consensus 210 ~~~~~~g~~~vgG~i~~ 226 (416)
. ++.-.|++++
T Consensus 77 ~------eIl~kGeiQl 87 (234)
T COG1500 77 E------EILKKGEIQL 87 (234)
T ss_pred H------HHHhcCceec
Confidence 2 2345666665
No 97
>cd02776 MopB_CT_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. This CD (MopB_CT_Nitrate-R-NarG-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.28 E-value=87 Score=28.01 Aligned_cols=34 Identities=9% Similarity=0.145 Sum_probs=27.9
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.+.+..|++.+...+++
T Consensus 33 v~inp~dA~~lgI~dGd~V~v~~~~G~v~~~a~v~~ 68 (141)
T cd02776 33 VWMNPKDAAELGIKDNDWVEVFNDNGVVVARAKVSP 68 (141)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECC
Confidence 457777766 6799999999988899888888776
No 98
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=30.23 E-value=91 Score=25.68 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=27.1
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.|....|.+.+.+.+++
T Consensus 31 v~inp~dA~~lGi~~Gd~V~v~s~~G~i~~~v~v~~ 66 (96)
T cd02788 31 ARLSPADAARLGLADGDLVEFSLGDGTLTLPVQISK 66 (96)
T ss_pred EEECHHHHHHcCCCCCCEEEEEECCeEEEEEEEECC
Confidence 456777766 5699999999988888888887766
No 99
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=30.10 E-value=41 Score=31.45 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=33.8
Q ss_pred ecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEc----cccCC-CCCCCCChHHHHHHHHHHHHc
Q 014895 262 QLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLH----PLGGF-TKADDVPLDVRMEQHSKVLED 321 (416)
Q Consensus 262 QTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~----PlvG~-tK~dDip~~vR~r~y~~~l~~ 321 (416)
=|-+++|.||..|+..| .++| +.+.|= -++-. .+..-.|+++|++-...+++.
T Consensus 12 GTFd~LH~GHk~LL~~A----~~~G---~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~ 69 (158)
T COG1019 12 GTFDRLHDGHKKLLEVA----FEIG---DRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLES 69 (158)
T ss_pred ccchhhhhhHHHHHHHH----HHhC---CeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHH
Confidence 38999999999998654 4565 223221 11111 234456889999888877763
No 100
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.80 E-value=72 Score=26.72 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=28.2
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.+.++.|.+.+...+++
T Consensus 33 v~i~p~dA~~lgI~dGd~V~v~s~~G~i~~~a~v~~ 68 (112)
T cd02787 33 VFMNPDDIARLGLKAGDRVDLESAFGDGQGRIVRGF 68 (112)
T ss_pred EEECHHHHHHhCCCCCCEEEEEecCCCCeEEEEecc
Confidence 556766665 5699999999999999999888877
No 101
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.52 E-value=72 Score=28.65 Aligned_cols=34 Identities=9% Similarity=-0.108 Sum_probs=26.9
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.|..+.|.+.+...|++
T Consensus 40 v~InP~dA~~lGI~dGD~V~V~s~~G~i~~~a~vt~ 75 (137)
T cd02784 40 ALVSPRTAEALGLLQGDVVRIRRGGRTIELPVWIQP 75 (137)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCeEEEEEEEECC
Confidence 345555555 6799999999988899988888776
No 102
>PRK04980 hypothetical protein; Provisional
Probab=29.51 E-value=65 Score=28.01 Aligned_cols=30 Identities=0% Similarity=-0.044 Sum_probs=26.4
Q ss_pred hhcCCCCeEEE-eCCCCCEEEEEEecccccc
Q 014895 159 ERIGSTTNVAL-LGPTGDLIGILRSIEIYKH 188 (416)
Q Consensus 159 ~~L~~G~~vaL-~d~eG~~vAiL~V~eiy~~ 188 (416)
...++||.+.+ ++.+|++++.+.|.++-..
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ieI~sV~~i 60 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIEVLSVSPV 60 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEEEEEEEEE
Confidence 45889999999 7788999999999998866
No 103
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=29.01 E-value=1e+02 Score=25.86 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=27.4
Q ss_pred EecChHHHhh--cCCCCeEEEeCCCCCEEEEEEeccc
Q 014895 151 LAIDDETKER--IGSTTNVALLGPTGDLIGILRSIEI 185 (416)
Q Consensus 151 L~V~~e~a~~--L~~G~~vaL~d~eG~~vAiL~V~ei 185 (416)
+-++.++|++ ++.||.|.+.+..|.+.+...+++-
T Consensus 37 v~in~~dA~~lgi~~Gd~V~v~~~~G~~~~~v~~~~~ 73 (122)
T cd02791 37 VEIHPEDAARLGLKEGDLVRVTSRRGEVVLRVRVTDR 73 (122)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECCC
Confidence 4467777664 5899999999988998888877663
No 104
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=28.37 E-value=65 Score=24.79 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.3
Q ss_pred cCCCCeEEEeCCCCCEEEEEEe
Q 014895 161 IGSTTNVALLGPTGDLIGILRS 182 (416)
Q Consensus 161 L~~G~~vaL~d~eG~~vAiL~V 182 (416)
+++|+.|++.|.+|+++|+-..
T Consensus 31 ~~~g~~V~v~~~~g~~vg~G~~ 52 (77)
T smart00359 31 IKEGDVVVIVDEKGEPLGIGLA 52 (77)
T ss_pred cCCCCEEEEEcCCCCEEEEEEE
Confidence 6789999999989999998763
No 105
>cd02780 MopB_CT_Tetrathionate_Arsenate-R This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of tetrathionate reductase, subunit A, (TtrA); respiratory arsenate As(V) reductase, catalytic subunit (ArrA); and other related proteins.
Probab=28.36 E-value=84 Score=27.64 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=28.1
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~ei 185 (416)
+.++.++|+ +|+.||.|.|.+..|.+.+.+.+++-
T Consensus 32 v~inp~dA~~lgI~~Gd~V~v~s~~G~i~~~v~i~~~ 68 (143)
T cd02780 32 VWINPEDAAKLGIKTGDRVRVVTPGGSVVGKAKVTEG 68 (143)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCceEEEEEEECCC
Confidence 345666665 57999999999989999988888763
No 106
>PRK13599 putative peroxiredoxin; Provisional
Probab=28.36 E-value=2.9e+02 Score=26.43 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=54.3
Q ss_pred cceeEEEecChHHHhhcCC---------CCeEEEeCCCCCEEEEEEeccccccCHHH--HHHHhhCCCCCCCcchhhhcc
Q 014895 145 MSLPIVLAIDDETKERIGS---------TTNVALLGPTGDLIGILRSIEIYKHNKEE--RIARTWGTTAAGLPYVEEVIT 213 (416)
Q Consensus 145 wpiPItL~V~~e~a~~L~~---------G~~vaL~d~eG~~vAiL~V~eiy~~Dk~~--ea~~VfGT~d~~HPgV~~~~~ 213 (416)
.++||..|.+.+.++.+.. --.+-++|++|++..+......=..+-++ ++-+-..++|. | +|+-
T Consensus 91 i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~~~~-~-~~~~--- 165 (215)
T PRK13599 91 IPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQTADQ-Y-GVAL--- 165 (215)
T ss_pred CceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhhhhh-c-CCCc---
Confidence 4679999888887777653 13456789999999987533322223332 22222344442 2 4442
Q ss_pred cCCcEEE----EeeEEEecCCCCCCCcccCCCCHHHHHHHHHh---cCCCeE
Q 014895 214 PAGNWLV----GGDLEVLKPIKYNDGLDHYRLSPQQLRKEFDN---RQADAI 258 (416)
Q Consensus 214 ~~g~~~v----gG~i~~l~~~~~~~~f~~~r~tP~e~R~~f~~---rgw~~V 258 (416)
--+|-- |.++-+ .|+ .|..|.++.|.+ .|++.+
T Consensus 166 -p~~w~~~~~~g~~~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~ 205 (215)
T PRK13599 166 -PEKWPNNYLIKDHVIV-PPS----------TDEASANERKEKIKSKEIEAF 205 (215)
T ss_pred -CCCCCCCCCCCCcEEE-cCC----------CCHHHHHHhccccccCCcccc
Confidence 334533 444443 222 367888888864 466644
No 107
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=28.12 E-value=84 Score=26.93 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=27.4
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEeccc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIEI 185 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~ei 185 (416)
+.++.++|+ +|+.||.|.|....|.+.+...+++-
T Consensus 36 v~i~p~dA~~lgi~~Gd~V~v~s~~g~i~~~v~i~~~ 72 (127)
T cd02777 36 VWINPLDAAARGIKDGDIVRVFNDRGAVLAGARVTDR 72 (127)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeEEEEEEEECCC
Confidence 455666665 56899999999888998888887763
No 108
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.35 E-value=96 Score=26.12 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=27.2
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.|....|++.+...+++
T Consensus 32 v~i~p~dA~~~gi~~Gd~V~v~s~~G~i~~~v~v~~ 67 (123)
T cd02778 32 LWINPETAARLGIKDGDRVEVSSARGKVTGKARLTE 67 (123)
T ss_pred EEECHHHHHHcCCCCCCEEEEEeCCCcEEEEEEEcC
Confidence 445666665 5799999999988999998888876
No 109
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=61 Score=30.20 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=23.2
Q ss_pred EEEecChHHHhhcCCCCeEEEeCCCCCEEEEE
Q 014895 149 IVLAIDDETKERIGSTTNVALLGPTGDLIGIL 180 (416)
Q Consensus 149 ItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL 180 (416)
++++++++ |.+||++..+|.+|+++|+=
T Consensus 103 fVi~~D~~----iR~~dEvlVVne~d~LlAvG 130 (155)
T COG1370 103 FVIDVDEE----IRAGDEVLVVNEDDELLAVG 130 (155)
T ss_pred heeccCcc----cCCCCeEEEECCCCcEEEee
Confidence 56777764 88999999999999988763
No 110
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=26.87 E-value=5.4e+02 Score=24.23 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=64.0
Q ss_pred CHHHHHHHHHhcCCCeEEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHc
Q 014895 242 SPQQLRKEFDNRQADAIFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLED 321 (416)
Q Consensus 242 tP~e~R~~f~~rgw~~VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~ 321 (416)
--.|+-+.++++|++-.++ |.++.+.....|-+.- +... -+.++..--+|..||+ .+. |+.+++.
T Consensus 97 g~~e~L~~Lk~~g~~~~i~--Tn~~~~~~~~~l~~~~---l~~~---fd~iv~s~~~~~~KP~---p~~----~~~~~~~ 161 (224)
T PRK14988 97 DTVPFLEALKASGKRRILL--TNAHPHNLAVKLEHTG---LDAH---LDLLLSTHTFGYPKED---QRL----WQAVAEH 161 (224)
T ss_pred CHHHHHHHHHhCCCeEEEE--eCcCHHHHHHHHHHCC---cHHH---CCEEEEeeeCCCCCCC---HHH----HHHHHHH
Confidence 4578888899999987777 8888766555442110 0111 1345554455666775 222 3333221
Q ss_pred CcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCcEEEecCCCCCCCCCCCCCCCCCCchHHHHHHh
Q 014895 322 GVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSM 391 (416)
Q Consensus 322 ~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcTHfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~ 391 (416)
--++|+++++ -|- .......+++.|+...+.=.++.+-........+++-.++++++..
T Consensus 162 ~~~~p~~~l~---------igD--s~~di~aA~~aG~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
T PRK14988 162 TGLKAERTLF---------IDD--SEPILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPS 220 (224)
T ss_pred cCCChHHEEE---------EcC--CHHHHHHHHHcCCeEEEEEeCCCCCccchhccCCCcHHHHHHHhhh
Confidence 1244555443 233 3356779999999654422232221111112234555555665543
No 111
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=26.72 E-value=89 Score=27.02 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=27.6
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.++.++|+ +|+.||.|.+.+..|.+.+...+++
T Consensus 35 v~i~p~dA~~~gi~~Gd~V~v~s~~G~~~~~~~~~~ 70 (129)
T cd02793 35 IRINPADAAARGIADGDIVRVFNDRGACLAGAVVTD 70 (129)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCEEEEEEEEECC
Confidence 456666655 6799999999998999998888866
No 112
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=26.59 E-value=62 Score=25.61 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=22.3
Q ss_pred eEEEecChHHHhhcCCCCeEEEeCCCCCEEEEEEe
Q 014895 148 PIVLAIDDETKERIGSTTNVALLGPTGDLIGILRS 182 (416)
Q Consensus 148 PItL~V~~e~a~~L~~G~~vaL~d~eG~~vAiL~V 182 (416)
|=+..++++ +++||.|.+.+.+|+.+|+=..
T Consensus 22 ~GV~~~~~~----f~~gd~V~i~~~~g~~ia~G~a 52 (74)
T PF01472_consen 22 PGVVEVDGD----FRKGDEVAIVDEDGEVIAVGRA 52 (74)
T ss_dssp GGEEEEETT------TTSEEEEEETTSSEEEEEEE
T ss_pred HHhEECCCC----cCCCCEEEEEcCCCeEEEEEEE
Confidence 544556554 6889999999999999988654
No 113
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=26.03 E-value=71 Score=33.00 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=36.2
Q ss_pred EEEeecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEE----ccccCCCCCCCCChHHHHHHHHHHHH
Q 014895 258 IFAFQLRNPIHNGHALLMNDTRRRLLEMGYKNPILLL----HPLGGFTKADDVPLDVRMEQHSKVLE 320 (416)
Q Consensus 258 VvaFQTRNPlHRaHE~l~r~a~~~ale~~~~~~~lLl----~PlvG~tK~dDip~~vR~r~y~~~l~ 320 (416)
|+..=|-+.+|-||..|++.| .+.| +.|.+ -.++-..|....|++.|++..+.+++
T Consensus 3 V~vgGTFD~lH~GH~~lL~~A----~~~g---d~LiVgvt~D~~~~~~k~~~~~~e~R~~~v~~fl~ 62 (322)
T PRK01170 3 TVVGGTFSKLHKGHKALLKKA----IETG---DEVVIGLTSDEYVRKNKVYPIPYEDRKRKLENFIK 62 (322)
T ss_pred EEEccccccCChHHHHHHHHH----HHcC---CEEEEEEccHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 333348999999999998754 3454 32322 12222222222999999999999985
No 114
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=25.95 E-value=39 Score=26.25 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.1
Q ss_pred HHhhcCCCCeEEEeCCCCCEEEE
Q 014895 157 TKERIGSTTNVALLGPTGDLIGI 179 (416)
Q Consensus 157 ~a~~L~~G~~vaL~d~eG~~vAi 179 (416)
.+.=|++|..+.+.-.+|+++++
T Consensus 36 ~~~~L~e~~~v~v~~~~~~~i~v 58 (61)
T cd04470 36 AAKFLKEGMEVIVLFYNGEPIGV 58 (61)
T ss_pred HHhhCcCCCEEEEEEECCEEEEE
Confidence 34448899988876568898876
No 115
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=24.96 E-value=1.2e+02 Score=29.82 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=45.1
Q ss_pred eEEEeecCCCCchhHHHHHHHHHHHHHHcC-CCCCeEEEccccC-CCCCCCCChHHHHHHHHHHH
Q 014895 257 AIFAFQLRNPIHNGHALLMNDTRRRLLEMG-YKNPILLLHPLGG-FTKADDVPLDVRMEQHSKVL 319 (416)
Q Consensus 257 ~VvaFQTRNPlHRaHE~l~r~a~~~ale~~-~~~~~lLl~PlvG-~tK~dDip~~vR~r~y~~~l 319 (416)
.++|++.-||+-..|..|+..|.+.+-|.+ +....=.+.|+.. -+|.+-+|+..|++.-|+.-
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkKKgLipa~hrv~~~ElAt 74 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKKKGLIPAYHRVRMVELAT 74 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhccccchhhhHHHHHHhhh
Confidence 467899999999999999998865543542 2222345678753 24568899999998777543
No 116
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain. The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.
Probab=24.95 E-value=38 Score=25.25 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.2
Q ss_pred HHhhcCCCCeEEEeCCCCCEEEE
Q 014895 157 TKERIGSTTNVALLGPTGDLIGI 179 (416)
Q Consensus 157 ~a~~L~~G~~vaL~d~eG~~vAi 179 (416)
.+.-|++|..|.+.-.+|+++++
T Consensus 33 ~~~~l~eg~~v~v~~~~g~~i~~ 55 (55)
T cd04463 33 SFESFEPGEVVLVDTRTGQYVGV 55 (55)
T ss_pred HHhhCCCCCEEEEEEECCEEEeC
Confidence 45668999999876568887763
No 117
>PRK08395 fumarate hydratase; Provisional
Probab=24.39 E-value=68 Score=30.06 Aligned_cols=23 Identities=13% Similarity=0.032 Sum_probs=19.9
Q ss_pred eEEEecChHHHhhcCCCCeEEEe
Q 014895 148 PIVLAIDDETKERIGSTTNVALL 170 (416)
Q Consensus 148 PItL~V~~e~a~~L~~G~~vaL~ 170 (416)
.+++++++|++++|+.||.|.|.
T Consensus 2 ~l~tPl~~e~i~~L~~GD~V~Ls 24 (162)
T PRK08395 2 KLKTPLSWEDVLKLKAGDVVYLS 24 (162)
T ss_pred eeeCCCCHHHHhhCCCCCEEEEE
Confidence 45677888999999999999996
No 118
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.35 E-value=7.1e+02 Score=24.71 Aligned_cols=104 Identities=11% Similarity=-0.006 Sum_probs=67.5
Q ss_pred HHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCce-EEEeCCCCcCCCChhHHHHHHHHHHhcCC
Q 014895 280 RRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETT-IVSIFPSPMHYAGPTEVQWHAKARINAGA 358 (416)
Q Consensus 280 ~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~-~l~ilP~~mryAGPREAllHAiiRkNyGc 358 (416)
+.+++.| .+++++.=..| .---++.+-|.+-.+.+.+ .. .+++ +++.+ . ..-+|++=.|...+..||
T Consensus 33 ~~l~~~G--v~gi~v~GstG--E~~~Lt~eEr~~v~~~~~~--~~-~g~~pvi~gv---~--~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 33 EWLLGYG--LEALFAAGGTG--EFFSLTPAEYEQVVEIAVS--TA-KGKVPVYTGV---G--GNTSDAIEIARLAEKAGA 100 (296)
T ss_pred HHHHhcC--CCEEEECCCCc--CcccCCHHHHHHHHHHHHH--Hh-CCCCcEEEec---C--ccHHHHHHHHHHHHHhCC
Confidence 3445555 57888744433 4445788999999998886 33 3332 33222 2 248999999999999999
Q ss_pred cEEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeee
Q 014895 359 NFYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIV 409 (416)
Q Consensus 359 THfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~ 409 (416)
+-+++-. +||-+..-+.+++.|... .+-.+++.+.|+
T Consensus 101 dav~~~p------------P~y~~~s~~~i~~~f~~v--~~a~~~pvilYn 137 (296)
T TIGR03249 101 DGYLLLP------------PYLINGEQEGLYAHVEAV--CESTDLGVIVYQ 137 (296)
T ss_pred CEEEECC------------CCCCCCCHHHHHHHHHHH--HhccCCCEEEEe
Confidence 9888733 255444557777766432 223467778887
No 119
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=22.91 E-value=7.4e+02 Score=24.42 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCc
Q 014895 280 RRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (416)
Q Consensus 280 ~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcT 359 (416)
+.+.+.| ++++++.=..| .---+..+-|.+-.+.+.+ .- ++++.++ .. .+.+|++-.|..++..||.
T Consensus 27 ~~l~~~G--v~Gl~~~GstG--E~~~Lt~eEr~~l~~~~~~--~~--~~vi~gv-g~----~~~~~ai~~a~~a~~~Gad 93 (279)
T cd00953 27 ENLISKG--IDYVFVAGTTG--LGPSLSFQEKLELLKAYSD--IT--DKVIFQV-GS----LNLEESIELARAAKSFGIY 93 (279)
T ss_pred HHHHHcC--CcEEEEcccCC--CcccCCHHHHHHHHHHHHH--Hc--CCEEEEe-Cc----CCHHHHHHHHHHHHHcCCC
Confidence 3445555 56788744433 4456788999999998886 33 3344433 21 4579999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeeee
Q 014895 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIVH 410 (416)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~~ 410 (416)
.++|-.-+ ||.+..-+.+++.|....+ .++.++|+-
T Consensus 94 ~v~v~~P~-----------y~~~~~~~~i~~yf~~v~~----~lpv~iYn~ 129 (279)
T cd00953 94 AIASLPPY-----------YFPGIPEEWLIKYFTDISS----PYPTFIYNY 129 (279)
T ss_pred EEEEeCCc-----------CCCCCCHHHHHHHHHHHHh----cCCEEEEeC
Confidence 99886521 4443233566665543333 577888863
No 120
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.82 E-value=2.9e+02 Score=24.84 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=32.5
Q ss_pred cceeEEEecChHHHhhcCCC--------CeEEEeCCCCCEEEEEEeccccccCHH
Q 014895 145 MSLPIVLAIDDETKERIGST--------TNVALLGPTGDLIGILRSIEIYKHNKE 191 (416)
Q Consensus 145 wpiPItL~V~~e~a~~L~~G--------~~vaL~d~eG~~vAiL~V~eiy~~Dk~ 191 (416)
+++|+..|.+.+.++.+..- -...|+|++|.++....-..-...+.+
T Consensus 93 ~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~ 147 (173)
T cd03015 93 INFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVD 147 (173)
T ss_pred cceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHH
Confidence 46699999888888776532 257888999999988854333334443
No 121
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=21.06 E-value=8e+02 Score=24.15 Aligned_cols=106 Identities=16% Similarity=0.053 Sum_probs=66.7
Q ss_pred HHHHc-CCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCc
Q 014895 281 RLLEM-GYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (416)
Q Consensus 281 ~ale~-~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcT 359 (416)
.+++. | .+++++.=..| .---++.+-|.+-.+.+++ ....+-.+++.+.. .+.+|++=.|...+..||+
T Consensus 29 ~l~~~~G--v~gi~~~GstG--E~~~Lt~~Er~~~~~~~~~--~~~~~~~viagv~~----~~~~~ai~~a~~a~~~Gad 98 (288)
T cd00954 29 YLIEKQG--VDGLYVNGSTG--EGFLLSVEERKQIAEIVAE--AAKGKVTLIAHVGS----LNLKESQELAKHAEELGYD 98 (288)
T ss_pred HHHhcCC--CCEEEECcCCc--CcccCCHHHHHHHHHHHHH--HhCCCCeEEeccCC----CCHHHHHHHHHHHHHcCCC
Confidence 34454 5 56787755544 3345678889999988886 34332223322221 3568999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEe-eeeeeeeee
Q 014895 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNIL-PFRVGIIVH 410 (416)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~-p~~~~~Y~~ 410 (416)
.+++-. .||-+....++++.|... .+-+ .++.++|+-
T Consensus 99 ~v~~~~------------P~y~~~~~~~i~~~~~~v--~~a~~~lpi~iYn~ 136 (288)
T cd00954 99 AISAIT------------PFYYKFSFEEIKDYYREI--IAAAASLPMIIYHI 136 (288)
T ss_pred EEEEeC------------CCCCCCCHHHHHHHHHHH--HHhcCCCCEEEEeC
Confidence 998763 244444556787776432 2334 466777764
No 122
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=21.00 E-value=3.3e+02 Score=30.00 Aligned_cols=90 Identities=18% Similarity=0.378 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHhcCCCeE-EEeecCCC-----CchhHHH-HHHHHHHHHHHcCCCCCeEEEccccCCCCCCCCChHHHHH
Q 014895 241 LSPQQLRKEFDNRQADAI-FAFQLRNP-----IHNGHAL-LMNDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLDVRME 313 (416)
Q Consensus 241 ~tP~e~R~~f~~rgw~~V-vaFQTRNP-----lHRaHE~-l~r~a~~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r 313 (416)
.++.++ +.+.+.|.++| +|.||-|+ ++|+|-. -...|.+.+.+.|++ +-+|-+.|. |+. ..+.-.+
T Consensus 204 i~~e~L-~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~---v~~~LM~GL--Pgq-t~e~~~~ 276 (522)
T TIGR01211 204 CREEHI-DRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLK---VVYHIMPGL--PGS-SFERDLE 276 (522)
T ss_pred CCHHHH-HHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe---EEEEeecCC--CCC-CHHHHHH
Confidence 467666 56667788886 89998776 4888732 233455666777754 444445442 221 1223355
Q ss_pred HHHHHHHcCcCCCCceEEEeCCCCcC
Q 014895 314 QHSKVLEDGVLDPETTIVSIFPSPMH 339 (416)
Q Consensus 314 ~y~~~l~~~y~p~~~~~l~ilP~~mr 339 (416)
+.+.++++--+.|+. ++++|+...
T Consensus 277 t~~~l~~~~~l~pD~--Ikiypl~V~ 300 (522)
T TIGR01211 277 MFREIFEDPRFKPDM--LKIYPTLVT 300 (522)
T ss_pred HHHHHHhccCCCcCE--EEEecceee
Confidence 666665322356775 556774433
No 123
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.63 E-value=1.4e+02 Score=26.90 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=27.8
Q ss_pred EecChHHHh--hcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 151 LAIDDETKE--RIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 151 L~V~~e~a~--~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+.+..++|+ +|+.||.|.+..+.|.+.+.+.+++
T Consensus 34 v~inp~dA~~~GI~dGd~V~v~s~~G~~~~~a~v~~ 69 (156)
T cd02783 34 LYMHPKTAKELGIKDGDWVWVESVNGRVKGQARFTE 69 (156)
T ss_pred EEECHHHHHHcCCCCCCEEEEEcCCeeEEEEEEECC
Confidence 456666665 5799999999998999998888876
No 124
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.42 E-value=7.9e+02 Score=23.80 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=65.5
Q ss_pred HHHHHcCCCCCeEEEccccCCCCCCCCChHHHHHHHHHHHHcCcCCCCceEEEeCCCCcCCCChhHHHHHHHHHHhcCCc
Q 014895 280 RRLLEMGYKNPILLLHPLGGFTKADDVPLDVRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGAN 359 (416)
Q Consensus 280 ~~ale~~~~~~~lLl~PlvG~tK~dDip~~vR~r~y~~~l~~~y~p~~~~~l~ilP~~mryAGPREAllHAiiRkNyGcT 359 (416)
+.+++.| ++++++.=..| .---+..+-|.+-.+.+.+ ....+..++..+. -..-+|++-.|...+..|+.
T Consensus 25 ~~l~~~G--v~gi~~~GstG--E~~~ls~~Er~~l~~~~~~--~~~~~~~vi~gv~----~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 25 EFLIEAG--VDGLVVLGTTG--EAPTLTDEERKEVIEAVVE--AVAGRVPVIAGVG----ANSTREAIELARHAEEAGAD 94 (281)
T ss_pred HHHHHcC--CCEEEECCCCc--ccccCCHHHHHHHHHHHHH--HhCCCCeEEEecC----CccHHHHHHHHHHHHHcCCC
Confidence 3445555 56777644433 4455788999999998886 3433322332222 12347999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCchHHHHHHhhcCCCceeEeeeeeeeeee
Q 014895 360 FYIVGRDPAGMGHPTEKRDLYDPDHGKKVLSMALGLEKLNILPFRVGIIVH 410 (416)
Q Consensus 360 HfIVGRDHAGvG~~~~~~~~Y~~~~aq~i~~~~~~~~~i~i~p~~~~~Y~~ 410 (416)
-+++-. .||-+..-+.+++.|....+ -...+.++|+-
T Consensus 95 ~v~v~p------------P~y~~~~~~~~~~~~~~ia~--~~~~pi~iYn~ 131 (281)
T cd00408 95 GVLVVP------------PYYNKPSQEGIVAHFKAVAD--ASDLPVILYNI 131 (281)
T ss_pred EEEECC------------CcCCCCCHHHHHHHHHHHHh--cCCCCEEEEEC
Confidence 999832 24444445677776633221 24566667754
No 125
>COG4118 Phd Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]
Probab=20.22 E-value=1.2e+02 Score=25.32 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHhhcCCCCeEEEeCCCCCEEEEEEecc
Q 014895 156 ETKERIGSTTNVALLGPTGDLIGILRSIE 184 (416)
Q Consensus 156 e~a~~L~~G~~vaL~d~eG~~vAiL~V~e 184 (416)
+..+.++.|+.|.+. ..|.++|.|.=-.
T Consensus 16 ~lL~rV~aGEev~IT-~~G~PVArivp~~ 43 (84)
T COG4118 16 ELLRRVRAGEEVIIT-KRGRPVARLVPLA 43 (84)
T ss_pred HHHHHHhCCCEEEEe-eCCeEEEEEeecC
Confidence 556778999999998 5899999998443
Done!