BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014896
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NI9|A Chain A, 2.0 A Structure Of Glycerol Metabolism Protein From E.
Coli
Length = 338
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 300 GEESEERHVVEQQL-----LSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAG 354
G+ E R + EQ+L + E VL +G +RS +V F + + +GIS G
Sbjct: 242 GDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSDNVIF-SATGITKGDLLEGISRKG 300
Query: 355 NAATQATLLL 364
N AT TLL+
Sbjct: 301 NIATTETLLI 310
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 116 AFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGP 175
+V+ G++ + HF +++ E + HII + PG PGG
Sbjct: 367 GLKVYGGVNAPYLWVHFKGSKSWDVFNEILENTHIITV--------PGS----GFGPGGE 414
Query: 176 PYVRLTGLGTSMEALEATGKRLSDF 200
Y+R++G G +EA+ KRL +F
Sbjct: 415 EYLRISGFGRRDHIVEAS-KRLQNF 438
>pdb|2R8T|A Chain A, Crystal Structure Of The Fructose 1,6-Bisphosphatase Glpx
From E.Coli In The Complex With Fructose
1,6-Bisphosphate
pdb|3BIG|A Chain A, Crystal Structure Of The Fructose-1,6-Bisphosphatase Glpx
From E.Coli In Complex With Inorganic Phosphate
pdb|3BIH|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphatase From
E.Coli Glpx
Length = 338
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 300 GEESEERHVVEQQL-----LSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAG 354
G+ E R + EQ+L + E VL +G +RS +V F + + +GIS G
Sbjct: 242 GDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSDNVIF-SATGITKGDLLEGISRKG 300
Query: 355 NAATQATLLL 364
N AT TLL+
Sbjct: 301 NIATTETLLI 310
>pdb|3D1R|A Chain A, Structure Of E. Coli Glpx With Its Substrate Fructose
1,6-Bisphosphate
Length = 337
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 300 GEESEERHVVEQQL-----LSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLAG 354
G+ E R + EQ+L + E VL +G +RS +V F + + +GIS G
Sbjct: 241 GDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSDNVIF-SATGITKGDLLEGISRKG 299
Query: 355 NAATQATLLL 364
N AT TLL+
Sbjct: 300 NIATTETLLI 309
>pdb|3VKW|A Chain A, Crystal Structure Of The Superfamily 1 Helicase From
Tomato Mosaic Virus
Length = 446
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 240 HSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDLSPAGSFLGRFVEAIHYYSALFDSL 295
H++++V G + L+ RL P V+++ +D L R +++ YY+ + D L
Sbjct: 372 HTVHEVQGETYADVSLV-RLTPTPVSIIARDSPHVLVSLSRHTKSLKYYTVVMDPL 426
>pdb|2BKV|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKV|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|A Chain A, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
pdb|2BKX|B Chain B, Structure And Kinetics Of A Monomeric Glucosamine-6-
Phosphate Deaminase: Missing Link Of The Nagb
Superfamily
Length = 242
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 45 QCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSC-LGIYAALP 103
Q A ++AD ++E +L ++ TP GT Q + + +E +S + +++ L YA L
Sbjct: 14 QIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLS 73
Query: 104 S 104
S
Sbjct: 74 S 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,415,922
Number of Sequences: 62578
Number of extensions: 452762
Number of successful extensions: 1112
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1112
Number of HSP's gapped (non-prelim): 6
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)