Query 014896
Match_columns 416
No_of_seqs 122 out of 712
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 01:08:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 6E-109 1E-113 839.9 37.2 359 39-397 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.017 3.7E-07 55.8 15.4 192 121-351 33-227 (247)
3 TIGR02752 MenG_heptapren 2-hep 95.4 1.1 2.4E-05 42.2 16.6 114 136-269 35-152 (231)
4 TIGR00740 methyltransferase, p 95.1 0.49 1.1E-05 45.1 13.3 107 146-269 53-162 (239)
5 TIGR02716 C20_methyl_CrtF C-20 93.7 1.5 3.2E-05 43.5 13.7 116 134-271 137-257 (306)
6 TIGR01934 MenG_MenH_UbiE ubiqu 93.1 5.8 0.00013 36.5 15.9 60 133-198 26-85 (223)
7 PF13847 Methyltransf_31: Meth 92.1 0.61 1.3E-05 41.1 7.4 104 145-267 2-108 (152)
8 PF09243 Rsm22: Mitochondrial 91.6 1.3 2.8E-05 43.6 9.8 137 130-285 13-156 (274)
9 PF01209 Ubie_methyltran: ubiE 90.5 0.63 1.4E-05 44.8 6.3 177 137-353 38-219 (233)
10 PRK06202 hypothetical protein; 89.4 5.3 0.00011 37.8 11.6 110 141-267 55-165 (232)
11 PRK00216 ubiE ubiquinone/menaq 89.0 18 0.00039 33.6 14.9 55 138-198 43-97 (239)
12 PF12847 Methyltransf_18: Meth 88.7 0.67 1.5E-05 38.1 4.4 104 149-268 4-110 (112)
13 PTZ00098 phosphoethanolamine N 88.2 5.8 0.00013 38.7 11.2 119 130-269 36-157 (263)
14 PRK14103 trans-aconitate 2-met 87.8 2.5 5.5E-05 40.7 8.3 105 136-268 19-125 (255)
15 PRK11207 tellurite resistance 86.8 4.6 0.0001 37.5 9.2 110 134-265 18-130 (197)
16 smart00138 MeTrc Methyltransfe 86.3 2.7 5.7E-05 41.2 7.6 54 144-197 97-152 (264)
17 TIGR03587 Pse_Me-ase pseudamin 86.0 4.3 9.3E-05 38.1 8.6 99 149-271 46-145 (204)
18 TIGR00477 tehB tellurite resis 85.4 4.8 0.0001 37.3 8.6 110 133-264 17-128 (195)
19 PLN02233 ubiquinone biosynthes 85.3 20 0.00044 34.8 13.2 130 134-282 61-195 (261)
20 PRK12335 tellurite resistance 84.8 5.6 0.00012 39.2 9.2 108 135-264 109-218 (287)
21 PRK08317 hypothetical protein; 84.6 26 0.00057 32.2 13.3 53 138-196 11-63 (241)
22 PRK01683 trans-aconitate 2-met 84.3 4.4 9.6E-05 38.8 8.1 109 134-268 19-129 (258)
23 PLN02396 hexaprenyldihydroxybe 84.1 4.2 9.1E-05 41.2 8.1 100 147-268 132-234 (322)
24 PLN02336 phosphoethanolamine N 83.1 19 0.00041 37.9 12.9 111 134-268 254-368 (475)
25 PRK11036 putative S-adenosyl-L 83.0 7.1 0.00015 37.6 8.9 110 136-266 35-146 (255)
26 TIGR02021 BchM-ChlM magnesium 82.2 8 0.00017 36.2 8.7 61 129-198 36-98 (219)
27 PF08242 Methyltransf_12: Meth 81.3 0.34 7.4E-06 39.3 -0.9 95 151-263 1-97 (99)
28 COG2227 UbiG 2-polyprenyl-3-me 81.2 4.2 9.1E-05 39.5 6.4 99 146-266 59-158 (243)
29 PF13649 Methyltransf_25: Meth 80.0 2.5 5.5E-05 34.4 4.0 54 150-211 1-54 (101)
30 smart00828 PKS_MT Methyltransf 79.7 8.1 0.00017 36.1 7.8 98 149-266 2-101 (224)
31 PLN02336 phosphoethanolamine N 79.4 14 0.00031 38.8 10.4 49 136-193 27-75 (475)
32 TIGR03438 probable methyltrans 78.6 17 0.00036 36.2 10.0 47 147-199 64-110 (301)
33 TIGR02072 BioC biotin biosynth 76.4 12 0.00025 34.8 7.8 110 135-268 20-134 (240)
34 PF02353 CMAS: Mycolic acid cy 76.2 12 0.00025 37.1 8.0 113 136-268 52-165 (273)
35 PRK11705 cyclopropane fatty ac 75.0 26 0.00056 36.3 10.6 54 136-197 157-210 (383)
36 PRK05785 hypothetical protein; 74.3 34 0.00073 32.6 10.5 41 147-195 52-92 (226)
37 PF08241 Methyltransf_11: Meth 74.0 3 6.5E-05 32.5 2.7 90 151-266 1-94 (95)
38 PLN02585 magnesium protoporphy 73.7 24 0.00052 35.6 9.7 103 146-267 144-248 (315)
39 PRK11873 arsM arsenite S-adeno 73.3 24 0.00052 34.1 9.4 98 147-265 78-179 (272)
40 PRK00107 gidB 16S rRNA methylt 73.3 72 0.0016 29.6 12.1 97 147-268 46-144 (187)
41 PLN02244 tocopherol O-methyltr 72.6 32 0.00068 34.9 10.4 97 146-264 118-218 (340)
42 COG2230 Cfa Cyclopropane fatty 71.4 12 0.00026 37.4 6.7 109 136-264 62-171 (283)
43 TIGR00452 methyltransferase, p 71.2 28 0.0006 35.2 9.5 111 137-268 112-224 (314)
44 PF13679 Methyltransf_32: Meth 69.4 12 0.00026 32.8 5.7 50 143-196 22-72 (141)
45 TIGR02081 metW methionine bios 68.3 49 0.0011 30.3 9.9 47 137-193 6-52 (194)
46 cd02440 AdoMet_MTases S-adenos 66.1 43 0.00092 25.3 7.8 39 149-195 1-39 (107)
47 PRK04148 hypothetical protein; 64.9 25 0.00053 31.2 6.7 69 138-214 8-111 (134)
48 TIGR03439 methyl_EasF probable 63.5 50 0.0011 33.4 9.6 138 147-294 77-234 (319)
49 TIGR02469 CbiT precorrin-6Y C5 63.1 20 0.00044 29.4 5.7 44 149-199 22-65 (124)
50 PRK11088 rrmA 23S rRNA methylt 62.5 34 0.00075 33.2 8.0 81 109-195 50-130 (272)
51 TIGR02085 meth_trns_rumB 23S r 62.1 77 0.0017 32.6 10.8 99 148-269 235-334 (374)
52 COG4106 Tam Trans-aconitate me 61.3 13 0.00027 36.0 4.4 107 139-269 23-129 (257)
53 PRK03522 rumB 23S rRNA methylu 61.2 94 0.002 31.0 11.0 100 147-269 174-274 (315)
54 PRK10909 rsmD 16S rRNA m(2)G96 59.3 1.4E+02 0.003 28.0 11.2 104 148-272 55-162 (199)
55 PRK06922 hypothetical protein; 58.2 39 0.00085 37.7 8.2 108 147-270 419-539 (677)
56 PRK07580 Mg-protoporphyrin IX 57.8 46 0.001 30.9 7.7 45 145-198 62-106 (230)
57 PRK09489 rsmC 16S ribosomal RN 57.3 24 0.00051 36.0 6.0 114 134-265 184-299 (342)
58 PF00891 Methyltransf_2: O-met 56.1 21 0.00046 33.8 5.2 45 136-187 90-134 (241)
59 PF02056 Glyco_hydro_4: Family 53.2 43 0.00093 31.2 6.5 64 158-221 9-72 (183)
60 PRK07402 precorrin-6B methylas 53.0 61 0.0013 29.7 7.6 64 129-199 23-86 (196)
61 COG2242 CobL Precorrin-6B meth 52.8 29 0.00062 32.6 5.2 53 139-201 27-82 (187)
62 PF05175 MTS: Methyltransferas 51.5 29 0.00063 31.2 5.1 64 133-207 18-81 (170)
63 smart00650 rADc Ribosomal RNA 51.0 36 0.00079 30.4 5.6 53 136-197 3-55 (169)
64 COG2226 UbiE Methylase involve 50.7 2.5E+02 0.0053 27.3 13.7 186 124-351 28-221 (238)
65 PRK14968 putative methyltransf 50.5 36 0.00078 30.3 5.6 44 146-198 23-66 (188)
66 TIGR00536 hemK_fam HemK family 50.0 44 0.00094 32.8 6.4 53 148-211 116-170 (284)
67 PRK15068 tRNA mo(5)U34 methylt 48.4 94 0.002 31.3 8.7 111 137-268 113-225 (322)
68 PRK15001 SAM-dependent 23S rib 47.8 42 0.00092 34.8 6.2 59 135-200 217-275 (378)
69 PRK00274 ksgA 16S ribosomal RN 47.2 37 0.0008 33.2 5.4 66 123-197 14-84 (272)
70 TIGR00537 hemK_rel_arch HemK-r 46.8 79 0.0017 28.4 7.2 50 149-211 22-71 (179)
71 TIGR00091 tRNA (guanine-N(7)-) 46.3 1.1E+02 0.0024 28.1 8.2 46 146-198 16-61 (194)
72 PF03848 TehB: Tellurite resis 45.8 91 0.002 29.3 7.5 106 136-264 20-128 (192)
73 PRK00517 prmA ribosomal protei 45.3 58 0.0013 31.3 6.4 61 130-198 101-163 (250)
74 PRK09328 N5-glutamine S-adenos 44.2 54 0.0012 31.4 6.0 48 144-198 106-153 (275)
75 PF13489 Methyltransf_23: Meth 44.1 79 0.0017 27.0 6.6 40 144-192 20-59 (161)
76 cd05298 GH4_GlvA_pagL_like Gly 43.4 53 0.0011 34.8 6.2 63 162-224 14-76 (437)
77 PRK00121 trmB tRNA (guanine-N( 43.3 41 0.00088 31.3 4.8 47 146-199 40-86 (202)
78 PRK13944 protein-L-isoaspartat 43.2 58 0.0013 30.3 5.9 56 137-198 63-118 (205)
79 COG2890 HemK Methylase of poly 42.8 37 0.00081 33.6 4.7 47 149-206 113-159 (280)
80 PRK08287 cobalt-precorrin-6Y C 42.8 59 0.0013 29.5 5.7 55 138-199 23-77 (187)
81 TIGR00406 prmA ribosomal prote 42.2 64 0.0014 31.8 6.3 60 131-198 142-203 (288)
82 KOG2904 Predicted methyltransf 42.1 40 0.00087 33.8 4.6 60 137-207 136-198 (328)
83 COG1093 SUI2 Translation initi 41.3 56 0.0012 32.2 5.5 40 173-212 218-261 (269)
84 PRK10258 biotin biosynthesis p 40.5 85 0.0018 29.8 6.7 54 134-196 30-83 (251)
85 PRK00050 16S rRNA m(4)C1402 me 40.3 68 0.0015 32.2 6.1 58 136-199 9-66 (296)
86 PHA03411 putative methyltransf 40.0 49 0.0011 33.0 5.0 71 117-195 34-106 (279)
87 PLN02446 (5-phosphoribosyl)-5- 38.6 38 0.00082 33.4 3.9 27 143-170 55-81 (262)
88 PLN02490 MPBQ/MSBQ methyltrans 38.0 1.1E+02 0.0024 31.3 7.3 98 146-266 113-212 (340)
89 cd05197 GH4_glycoside_hydrolas 37.8 70 0.0015 33.7 6.0 62 162-223 14-75 (425)
90 PRK13168 rumA 23S rRNA m(5)U19 37.4 3.2E+02 0.0068 28.7 10.9 103 145-269 296-400 (443)
91 TIGR00138 gidB 16S rRNA methyl 37.4 1.2E+02 0.0025 27.9 6.8 97 147-268 43-141 (181)
92 COG2813 RsmC 16S RNA G1207 met 36.4 67 0.0015 32.4 5.3 59 133-198 145-203 (300)
93 PLN02232 ubiquinone biosynthes 35.3 2.4E+02 0.0053 25.0 8.4 144 181-354 1-147 (160)
94 PLN03075 nicotianamine synthas 35.1 2.5E+02 0.0053 28.3 9.1 105 149-269 126-233 (296)
95 PRK11727 23S rRNA mA1618 methy 35.1 92 0.002 31.6 6.2 48 144-198 112-159 (321)
96 PF15609 PRTase_2: Phosphoribo 34.6 81 0.0018 29.7 5.2 71 141-214 117-187 (191)
97 TIGR01983 UbiG ubiquinone bios 34.4 3.2E+02 0.0069 25.1 9.4 100 146-267 45-147 (224)
98 KOG1165 Casein kinase (serine/ 33.9 22 0.00048 36.6 1.5 12 145-156 165-176 (449)
99 TIGR00755 ksgA dimethyladenosi 33.1 90 0.002 30.0 5.6 53 136-197 19-71 (253)
100 TIGR01716 RGG_Cterm transcript 32.4 77 0.0017 29.3 4.8 56 38-93 126-182 (220)
101 PRK00312 pcm protein-L-isoaspa 31.9 92 0.002 28.8 5.3 54 138-200 70-123 (212)
102 TIGR00080 pimt protein-L-isoas 31.6 1.1E+02 0.0024 28.5 5.8 57 137-199 68-124 (215)
103 TIGR03534 RF_mod_PrmC protein- 31.1 85 0.0018 29.4 5.0 51 146-207 87-137 (251)
104 PRK14966 unknown domain/N5-glu 30.5 1.1E+02 0.0023 32.4 5.9 52 149-211 254-305 (423)
105 PRK13255 thiopurine S-methyltr 30.5 3E+02 0.0065 26.0 8.6 37 147-192 38-74 (218)
106 PF02527 GidB: rRNA small subu 30.1 95 0.0021 28.8 5.0 59 149-219 51-109 (184)
107 TIGR03840 TMPT_Se_Te thiopurin 30.1 3.2E+02 0.0069 25.7 8.7 37 147-192 35-71 (213)
108 PRK14121 tRNA (guanine-N(7)-)- 30.1 96 0.0021 32.4 5.4 55 137-198 113-167 (390)
109 PRK03646 dadX alanine racemase 29.7 85 0.0018 32.1 5.0 53 146-202 117-177 (355)
110 TIGR00417 speE spermidine synt 29.2 5.3E+02 0.012 24.9 12.5 131 149-295 75-210 (270)
111 PF07521 RMMBL: RNA-metabolisi 28.8 81 0.0017 22.0 3.3 24 247-270 18-41 (43)
112 PRK13942 protein-L-isoaspartat 28.7 1.2E+02 0.0026 28.4 5.4 56 138-199 68-123 (212)
113 PF11455 DUF3018: Protein of 28.0 28 0.0006 27.1 0.8 19 334-352 4-22 (65)
114 TIGR00479 rumA 23S rRNA (uraci 27.9 5.4E+02 0.012 26.7 10.7 100 147-268 293-395 (431)
115 COG0357 GidB Predicted S-adeno 27.6 2.1E+02 0.0046 27.4 6.9 63 147-222 68-131 (215)
116 COG0052 RpsB Ribosomal protein 27.6 1.7E+02 0.0036 28.8 6.2 53 146-211 36-94 (252)
117 TIGR02129 hisA_euk phosphoribo 27.2 58 0.0013 32.0 3.1 26 143-172 50-75 (253)
118 COG4952 Predicted sugar isomer 27.0 1.9E+02 0.0042 29.2 6.6 58 257-320 169-229 (430)
119 PRK00745 4-oxalocrotonate taut 26.7 1.3E+02 0.0028 22.1 4.3 48 176-225 2-51 (62)
120 PRK11805 N5-glutamine S-adenos 26.4 1.3E+02 0.0028 30.2 5.5 44 148-198 135-178 (307)
121 cd00635 PLPDE_III_YBL036c_like 26.0 1.9E+02 0.0041 27.1 6.3 64 146-213 117-197 (222)
122 PRK14896 ksgA 16S ribosomal RN 25.8 1.4E+02 0.0031 28.8 5.6 58 132-198 11-72 (258)
123 PTZ00338 dimethyladenosine tra 25.8 2.2E+02 0.0048 28.3 7.0 53 138-199 28-80 (294)
124 PF05401 NodS: Nodulation prot 25.8 1.8E+02 0.0038 27.7 5.9 110 137-267 33-144 (201)
125 PHA03412 putative methyltransf 25.7 97 0.0021 30.2 4.3 46 147-196 50-95 (241)
126 COG0123 AcuC Deacetylases, inc 25.6 54 0.0012 33.5 2.7 26 136-163 146-173 (340)
127 PRK05134 bifunctional 3-demeth 25.2 1.3E+02 0.0028 28.1 5.0 102 145-268 47-150 (233)
128 TIGR01626 ytfJ_HI0045 conserve 24.4 1.1E+02 0.0024 28.5 4.3 86 146-237 59-155 (184)
129 cd05296 GH4_P_beta_glucosidase 24.2 1.8E+02 0.0039 30.6 6.3 59 162-220 14-73 (419)
130 TIGR03533 L3_gln_methyl protei 23.9 1.4E+02 0.0031 29.4 5.2 51 146-207 121-171 (284)
131 KOG3820 Aromatic amino acid hy 23.6 1.2E+02 0.0026 31.8 4.7 74 149-222 333-432 (461)
132 PRK00811 spermidine synthase; 23.5 5.1E+02 0.011 25.4 9.1 47 149-202 79-125 (283)
133 PF01135 PCMT: Protein-L-isoas 23.1 2.2E+02 0.0047 26.9 6.1 61 137-203 63-123 (209)
134 TIGR03183 DNA_S_dndC putative 22.7 3.4E+02 0.0073 29.0 8.0 79 136-214 3-91 (447)
135 PRK03987 translation initiatio 21.5 1.8E+02 0.0039 28.6 5.3 39 174-212 217-259 (262)
136 PRK14967 putative methyltransf 20.8 2.3E+02 0.0049 26.5 5.7 52 147-210 37-88 (223)
137 cd06100 CCL_ACL-C Citryl-CoA l 20.5 3.8E+02 0.0082 25.5 7.3 89 56-154 85-176 (227)
138 PTZ00063 histone deacetylase; 20.5 79 0.0017 33.5 2.7 26 137-162 156-183 (436)
139 PRK10507 bifunctional glutathi 20.1 2.1E+02 0.0046 31.8 6.0 59 154-214 354-417 (619)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=5.8e-109 Score=839.91 Aligned_cols=359 Identities=50% Similarity=0.838 Sum_probs=336.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCCCChhhhHHHHHHHHHHhhhhcCCccccccCCCCCcc--cHHHHHHH
Q 014896 39 LLTLLLQCAEAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAALPSLPQT--HTQKMVSA 116 (416)
Q Consensus 39 L~~lL~~CA~Av~~g~~~~A~~lL~~L~~~asp~Gd~~qRla~yF~eAL~~Rl~~~~~~~y~~~~~~~~~--~~~~~~~a 116 (416)
|++||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+++++.|..++..+.. ...++..+
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999998888766432221 25678899
Q ss_pred HHHHHccCCccchhHHHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCC----CHHHHHH
Q 014896 117 FQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEA 192 (416)
Q Consensus 117 ~~~f~~~~P~~kfa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~----~~~~l~~ 192 (416)
|+.||+.|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||++ +.+.+++
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~ 160 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE 160 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 6789999
Q ss_pred HHHHHHHHHHHcCCCeEEEe-ccccccccCccccccCCCceEEEeee---cccccccC---CCchHHHHHHHhcCCcEEE
Q 014896 193 TGKRLSDFAEKLGLPFEFCP-VAEKVGNLDPERLNISKREAVAVHWL---QHSLYDVT---GSDTNTLCLLQRLAPKVVT 265 (416)
Q Consensus 193 tg~rL~~~A~~lgvpFeF~~-v~~~~e~l~~~~l~~~~~EalaVn~l---~h~l~~~~---~~~~~~L~~ir~L~P~vvt 265 (416)
||++|.+||+++||||||++ +..+++++++++|++++||+|||||+ ||++.+.. .+++.+|+.||+|+|+|||
T Consensus 161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv 240 (374)
T PF03514_consen 161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV 240 (374)
T ss_pred HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999 47799999999999999999999984 55543221 2356799999999999999
Q ss_pred EeccCCCCC-CChhHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhhhhcCCCCcccc-cccccHHHHHH
Q 014896 266 VVEQDLSPA-GSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGD-VKFHNWREKLQ 343 (416)
Q Consensus 266 lvE~ea~~~-~~F~~RF~eaL~yYsalFDsLda~~~~~~~eR~~~E~~~l~~eI~niVa~eG~~R~er-e~~~~W~~rm~ 343 (416)
++|+|++|| ++|++||.|||+||+++|||||+++|+++++|..+|+.+||+||+|||||||.+|+|| |++++|+.||+
T Consensus 241 ~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r~~ 320 (374)
T PF03514_consen 241 LVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRRMR 320 (374)
T ss_pred EEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHHHH
Confidence 999999987 5899999999999999999999999999999999999999999999999999999997 79999999999
Q ss_pred cCCCccccCChhHHHHHHHHhcCCCCCCcEEEEeCCEEEEEECCceEEEEeecc
Q 014896 344 RSGFKGISLAGNAATQATLLLGMFPCDGYTLVEDNGTLKLGWKDLCLLTASAWR 397 (416)
Q Consensus 344 ~aGF~~~~ls~~~~~qa~~ll~~~~~~gy~v~e~~g~L~LgWk~~pL~~~SaW~ 397 (416)
+|||+++|+|+.+++|||+++++|+++||+|++++|||+|||||+||+++|+||
T Consensus 321 ~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 321 RAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred hcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999888999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.14 E-value=0.017 Score=55.76 Aligned_cols=192 Identities=12% Similarity=0.147 Sum_probs=99.9
Q ss_pred HccCCccchhHHHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 014896 121 NGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDF 200 (416)
Q Consensus 121 ~~~~P~~kfa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~ 200 (416)
....|.....|-.++..+-.-+. ..-+|+|+|.|.|.--..|.+.+. .|..++|||+.+.+.++.+.+++.++
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~S~~ml~~A~~~~~~~ 105 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDNSPAMIERCRRHIDAY 105 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 44567777777666543322222 234799999998863333322221 25679999999999888888777543
Q ss_pred HHHcCCCeEEEeccccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCc-EEEEeccCCCCCCCh
Q 014896 201 AEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPK-VVTVVEQDLSPAGSF 277 (416)
Q Consensus 201 A~~lgvpFeF~~v~~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~-vvtlvE~ea~~~~~F 277 (416)
. ..-.++|. ...+.++.. ...++++.|. +||+ .+ .....++.. .+.|+|. +++++|.=...+...
T Consensus 106 ~--~~~~v~~~--~~d~~~~~~-----~~~D~vv~~~~l~~l-~~--~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~ 173 (247)
T PRK15451 106 K--APTPVDVI--EGDIRDIAI-----ENASMVVLNFTLQFL-EP--SERQALLDKIYQGLNPGGALVLSEKFSFEDAKV 173 (247)
T ss_pred C--CCCCeEEE--eCChhhCCC-----CCCCEEehhhHHHhC-CH--HHHHHHHHHHHHhcCCCCEEEEEEecCCCcchh
Confidence 2 11134443 233333322 2234555565 4443 21 223455555 4789997 556666433332333
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhhhhcCCCCcccccccccHHHHHHcCCCcccc
Q 014896 278 LGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGIS 351 (416)
Q Consensus 278 ~~RF~eaL~yYsalFDsLda~~~~~~~eR~~~E~~~l~~eI~niVa~eG~~R~ere~~~~W~~rm~~aGF~~~~ 351 (416)
-..+.+..+.|. .....+ ...+++. .....|++-. .+..+..++|+.|||..+.
T Consensus 174 ~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~~~~~~--------~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 174 GELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLENVMLT--------DSVETHKARLHKAGFEHSE 227 (247)
T ss_pred HHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHHhhccc--------CCHHHHHHHHHHcCchhHH
Confidence 333333322221 111111 1122221 1122332221 2567889999999998654
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.40 E-value=1.1 Score=42.18 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEecc
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVA 214 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~ 214 (416)
+.++..+.-...-+|+|+|.|.|.- ...|+.+. +|..++|||+.+...++.+.+++.+ .+++ .+| +.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~----~~~la~~~--~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~v~~--~~ 102 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADW----SIALAEAV--GPEGHVIGLDFSENMLSVGRQKVKD----AGLHNVEL--VH 102 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHH----HHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEE--EE
Confidence 4566666544456899999998873 23444331 2456899999998877777766542 3443 333 22
Q ss_pred ccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEE-Eecc
Q 014896 215 EKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVT-VVEQ 269 (416)
Q Consensus 215 ~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvt-lvE~ 269 (416)
...+++.. ....=+.|+.+. ++|. .....+|.. .+.|+|...+ ++|.
T Consensus 103 ~d~~~~~~---~~~~fD~V~~~~~l~~~-----~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 103 GNAMELPF---DDNSFDYVTIGFGLRNV-----PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred echhcCCC---CCCCccEEEEecccccC-----CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 22333221 111224444443 3332 123455544 5789998544 4554
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.09 E-value=0.49 Score=45.09 Aligned_cols=107 Identities=17% Similarity=0.266 Sum_probs=61.7
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcccc
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l 225 (416)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.+...++.+.+++.++. .+...+|. ...+.++..
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~--~~d~~~~~~--- 120 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEIL--CNDIRHVEI--- 120 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEE--ECChhhCCC---
Confidence 44579999999885 4455554421 256899999999888888877775432 12234443 223333322
Q ss_pred ccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEE-Eecc
Q 014896 226 NISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVT-VVEQ 269 (416)
Q Consensus 226 ~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvt-lvE~ 269 (416)
.+.++++.+. +||+ .+ .....+|.. -+.|+|.-.+ +.|.
T Consensus 121 --~~~d~v~~~~~l~~~-~~--~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 121 --KNASMVILNFTLQFL-PP--EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred --CCCCEEeeecchhhC-CH--HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 2234555554 4543 21 123455655 4778998654 4443
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=93.73 E-value=1.5 Score=43.51 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=64.6
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC--eEEE
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP--FEFC 211 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp--FeF~ 211 (416)
+.+.|++.+.-.+.-+|+|+|.|.|. +...++++. |.+++|+++.+ ..++.+.+ .++..|+. ++|.
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-~~~~~a~~----~~~~~gl~~rv~~~ 204 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-GAIDLVNE----NAAEKGVADRMRGI 204 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-HHHHHHHH----HHHhCCccceEEEE
Confidence 35678887766666799999999884 444555553 67899999864 44555444 34455654 3443
Q ss_pred eccccccccCccccccCCCceEEEeeecccccccCCC-chHHHHH-HHhcCCc-EEEEeccCC
Q 014896 212 PVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVTGS-DTNTLCL-LQRLAPK-VVTVVEQDL 271 (416)
Q Consensus 212 ~v~~~~e~l~~~~l~~~~~EalaVn~l~h~l~~~~~~-~~~~L~~-ir~L~P~-vvtlvE~ea 271 (416)
. .+..+.+ ....+++.+..+.| +.... ....|+. .+.|+|. .++++|.-.
T Consensus 205 ~--~d~~~~~-----~~~~D~v~~~~~lh---~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 205 A--VDIYKES-----YPEADAVLFCRILY---SANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred e--cCccCCC-----CCCCCEEEeEhhhh---cCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 2 2222111 12234444433222 22111 2346655 4789996 555666533
No 6
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.14 E-value=5.8 Score=36.49 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=40.2
Q ss_pred HHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 133 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 133 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
...+.+++.+.......|+|+|.+.|. +...++.+- |+..++++++.+...++.+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECCHHHHHHHHHHhc
Confidence 344566666665567899999998885 333444332 334789999998877777666553
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=92.08 E-value=0.61 Score=41.11 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=60.0
Q ss_pred CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcc
Q 014896 145 EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPE 223 (416)
Q Consensus 145 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~ 223 (416)
++..+|+|+|.|.|..=..|.+.+ .|..++|||+.+.+.++.+.+ .++..+++ .+|.. .++.+++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~~i~~a~~----~~~~~~~~ni~~~~--~d~~~l~~~ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEEMIEYAKK----RAKELGLDNIEFIQ--GDIEDLPQE 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHHHHHHHHH----HHHHTTSTTEEEEE--SBTTCGCGC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHHHHHHhhc----ccccccccccceEE--eehhccccc
Confidence 456799999999886444444322 134569999999887766554 56677887 55554 345554432
Q ss_pred ccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEEEe
Q 014896 224 RLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVTVV 267 (416)
Q Consensus 224 ~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlv 267 (416)
+. ..=+.+..+. ++|. .....+|.. .+.|+|..++++
T Consensus 70 -~~-~~~D~I~~~~~l~~~-----~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 70 -LE-EKFDIIISNGVLHHF-----PDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp -SS-TTEEEEEEESTGGGT-----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cC-CCeeEEEEcCchhhc-----cCHHHHHHHHHHHcCCCcEEEE
Confidence 22 2223344343 3332 122345544 688999866543
No 8
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.56 E-value=1.3 Score=43.63 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=72.6
Q ss_pred hHHHHhHHHHHhhhc----CCeeEEeeccccCcc-ccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHc
Q 014896 130 SHFTANQAIQEAFER----EDRVHIIDLDIMQGL-QWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKL 204 (416)
Q Consensus 130 a~~taNqaILeA~~g----~~~VHIIDf~i~~G~-QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~l 204 (416)
+++++-..||+.+.. -+--+|+|||-|-|. =|.. .+.+ +-...+|.|+.+...+ +.++.|.+-....
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~~~~-~l~~~l~~~~~~~ 84 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSPEML-ELAKRLLRAGPNN 84 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCHHHH-HHHHHHHhccccc
Confidence 566777777777763 355699999999873 3322 1222 1246799999877655 4555554422111
Q ss_pred CCCeEEEeccccccccCccccccCCCceEEEeeecccccccC-CCchHHHHHH-HhcCCcEEEEeccCCCCCCChhHHHH
Q 014896 205 GLPFEFCPVAEKVGNLDPERLNISKREAVAVHWLQHSLYDVT-GSDTNTLCLL-QRLAPKVVTVVEQDLSPAGSFLGRFV 282 (416)
Q Consensus 205 gvpFeF~~v~~~~e~l~~~~l~~~~~EalaVn~l~h~l~~~~-~~~~~~L~~i-r~L~P~vvtlvE~ea~~~~~F~~RF~ 282 (416)
. ..+.. ..+..+...+.+.+.+++.. .|.+.+ ..+..++..+ ..++| ++|+||+....+...+.+.+
T Consensus 85 ~-~~~~~------~~~~~~~~~~~~~DLvi~s~---~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~~Gf~~i~~aR 153 (274)
T PF09243_consen 85 R-NAEWR------RVLYRDFLPFPPDDLVIASY---VLNELPSAARAELVRSLWNKTAP-VLVLVEPGTPAGFRRIAEAR 153 (274)
T ss_pred c-cchhh------hhhhcccccCCCCcEEEEeh---hhhcCCchHHHHHHHHHHHhccC-cEEEEcCCChHHHHHHHHHH
Confidence 1 01111 11111122233334444432 222222 2334444444 55666 88999986555446778888
Q ss_pred HHH
Q 014896 283 EAI 285 (416)
Q Consensus 283 eaL 285 (416)
+.|
T Consensus 154 ~~l 156 (274)
T PF09243_consen 154 DQL 156 (274)
T ss_pred HHH
Confidence 776
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=90.46 E-value=0.63 Score=44.81 Aligned_cols=177 Identities=19% Similarity=0.282 Sum_probs=62.0
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecccc
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEK 216 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~ 216 (416)
.+++.+...+..+|+|.+.|.|--+.. |+.+.+ |.-+|||++.+.+-|+.+.+++.+.... ..+|. ..+
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s~~ML~~a~~k~~~~~~~---~i~~v--~~d 106 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDISPGMLEVARKKLKREGLQ---NIEFV--QGD 106 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-HHHHHHHHHHHHHTT-----SEEEE--E-B
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCCHHHHHHHHHHHHhhCCC---CeeEE--EcC
Confidence 455566666677999999999964443 344322 4459999999999999988888765433 33333 223
Q ss_pred ccccCccccccCCCc--eEEEeeecccccccCCCchHHH-HHHHhcCCcE-EEEeccCCCCCCChhHHHHHHHHHHHHHH
Q 014896 217 VGNLDPERLNISKRE--AVAVHWLQHSLYDVTGSDTNTL-CLLQRLAPKV-VTVVEQDLSPAGSFLGRFVEAIHYYSALF 292 (416)
Q Consensus 217 ~e~l~~~~l~~~~~E--alaVn~l~h~l~~~~~~~~~~L-~~ir~L~P~v-vtlvE~ea~~~~~F~~RF~eaL~yYsalF 292 (416)
.+++. ..++. ++.+.+..|.+ + +..+.| .+.|-|+|.- ++++|-.-.. ..++..+ ..+|...+
T Consensus 107 a~~lp-----~~d~sfD~v~~~fglrn~---~-d~~~~l~E~~RVLkPGG~l~ile~~~p~-~~~~~~~---~~~y~~~i 173 (233)
T PF01209_consen 107 AEDLP-----FPDNSFDAVTCSFGLRNF---P-DRERALREMYRVLKPGGRLVILEFSKPR-NPLLRAL---YKFYFKYI 173 (233)
T ss_dssp TTB-------S-TT-EEEEEEES-GGG----S-SHHHHHHHHHHHEEEEEEEEEEEEEB-S-SHHHHHH---HHH-----
T ss_pred HHHhc-----CCCCceeEEEHHhhHHhh---C-CHHHHHHHHHHHcCCCeEEEEeeccCCC-Cchhhce---eeeeeccc
Confidence 34443 23343 33333323322 2 244555 4468899975 4566642222 1233322 23444322
Q ss_pred H-hhhccCCCCCHHHHHHHHHHHHHHHhhhhhcCCCCcccccccccHHHHHHcCCCccccCC
Q 014896 293 D-SLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGISLA 353 (416)
Q Consensus 293 D-sLda~~~~~~~eR~~~E~~~l~~eI~niVa~eG~~R~ere~~~~W~~rm~~aGF~~~~ls 353 (416)
- -+...+.. ++.. -.+|.+-|.+... .++=.+.|+.+||+.+...
T Consensus 174 lP~~g~l~~~---~~~~--Y~yL~~Si~~f~~-----------~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 174 LPLIGRLLSG---DREA--YRYLPESIRRFPS-----------PEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp --------------------------------------------------------------
T ss_pred cccccccccc---cccc--ccccccccccccc-----------ccccccccccccccccccc
Confidence 1 12222222 1222 2355666654332 2345678889999876543
No 10
>PRK06202 hypothetical protein; Provisional
Probab=89.35 E-value=5.3 Score=37.80 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=57.1
Q ss_pred hhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecccccccc
Q 014896 141 AFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNL 220 (416)
Q Consensus 141 A~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l 220 (416)
.+...+...|+|+|.|.|. +...|.....+ ..|..+||||+.+.+.++.+.++.. ..++.+.... .+++
T Consensus 55 ~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s~~~l~~a~~~~~----~~~~~~~~~~----~~~l 123 (232)
T PRK06202 55 ALSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPDPRAVAFARANPR----RPGVTFRQAV----SDEL 123 (232)
T ss_pred hcCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCCHHHHHHHHhccc----cCCCeEEEEe----cccc
Confidence 3344566789999999996 33333222211 1345789999999887777655431 2345543321 1222
Q ss_pred CccccccCCCceEEEe-eecccccccCCCchHHHHHHHhcCCcEEEEe
Q 014896 221 DPERLNISKREAVAVH-WLQHSLYDVTGSDTNTLCLLQRLAPKVVTVV 267 (416)
Q Consensus 221 ~~~~l~~~~~EalaVn-~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlv 267 (416)
.. .-..=++++.| .+||+ .+ .....+|..+.++.-..+++.
T Consensus 124 ~~---~~~~fD~V~~~~~lhh~-~d--~~~~~~l~~~~r~~~~~~~i~ 165 (232)
T PRK06202 124 VA---EGERFDVVTSNHFLHHL-DD--AEVVRLLADSAALARRLVLHN 165 (232)
T ss_pred cc---cCCCccEEEECCeeecC-Ch--HHHHHHHHHHHHhcCeeEEEe
Confidence 11 01223556666 46665 22 113456666544433444443
No 11
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.04 E-value=18 Score=33.59 Aligned_cols=55 Identities=20% Similarity=0.108 Sum_probs=35.8
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
+++.+.-....+|+|+|.+.|. +...++.+- |+..++|+++.+...++.+.+++.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~~--~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKAV--GKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHhhc
Confidence 4444443445789999999985 222333321 346899999998877777666553
No 12
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.72 E-value=0.67 Score=38.07 Aligned_cols=104 Identities=23% Similarity=0.219 Sum_probs=57.4
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccccccC
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNIS 228 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l~~~ 228 (416)
+|+|+|.+.|.- ...|+++ -|..++|||+.+.+.++.+.++..+.. .+-..+|.. ..+ ....+. ..
T Consensus 4 ~vLDlGcG~G~~----~~~l~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~--~d~-~~~~~~--~~ 69 (112)
T PF12847_consen 4 RVLDLGCGTGRL----SIALARL---FPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQ--GDA-EFDPDF--LE 69 (112)
T ss_dssp EEEEETTTTSHH----HHHHHHH---HTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEE--SCC-HGGTTT--SS
T ss_pred EEEEEcCcCCHH----HHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEE--Ccc-ccCccc--CC
Confidence 689999998853 3344432 145789999999999988888874422 333444443 112 101100 11
Q ss_pred CCceEEEee--ecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 229 KREAVAVHW--LQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 229 ~~EalaVn~--l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
+=+++..+. +++.+.. .....+|.. .+.|+|.-+++++
T Consensus 70 ~~D~v~~~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 70 PFDLVICSGFTLHFLLPL--DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp CEEEEEECSGSGGGCCHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEEEECCCccccccch--hHHHHHHHHHHHhcCCCcEEEEE
Confidence 223444443 2223221 233456665 4689998776654
No 13
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.20 E-value=5.8 Score=38.65 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=65.4
Q ss_pred hHHHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeE
Q 014896 130 SHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFE 209 (416)
Q Consensus 130 a~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFe 209 (416)
+-+-+.+.|++.+.-...-+|+|+|.+.|.-- ..|+.+. ..++|||+.+...++.+.++... .-..+
T Consensus 36 gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~----~~~v~giD~s~~~~~~a~~~~~~-----~~~i~ 102 (263)
T PTZ00098 36 GGIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKY----GAHVHGVDICEKMVNIAKLRNSD-----KNKIE 102 (263)
T ss_pred CchHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhc----CCEEEEEECCHHHHHHHHHHcCc-----CCceE
Confidence 33445677788776566678999999998732 3444433 24899999988877776665432 11233
Q ss_pred EEeccccccccCccccccCCCceEEE-eeecccccccCCCchHHHHH-HHhcCCcEEE-Eecc
Q 014896 210 FCPVAEKVGNLDPERLNISKREAVAV-HWLQHSLYDVTGSDTNTLCL-LQRLAPKVVT-VVEQ 269 (416)
Q Consensus 210 F~~v~~~~e~l~~~~l~~~~~EalaV-n~l~h~l~~~~~~~~~~L~~-ir~L~P~vvt-lvE~ 269 (416)
|... ...+.. +.-..=+++.. +.++|.. ......+|.. .+.|+|.-.+ +++.
T Consensus 103 ~~~~--D~~~~~---~~~~~FD~V~s~~~l~h~~---~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 103 FEAN--DILKKD---FPENTFDMIYSRDAILHLS---YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred EEEC--CcccCC---CCCCCeEEEEEhhhHHhCC---HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4321 121111 10011134443 3455641 1134456655 4779998554 4443
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=87.76 E-value=2.5 Score=40.67 Aligned_cols=105 Identities=23% Similarity=0.250 Sum_probs=61.6
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccc
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAE 215 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~ 215 (416)
..+++.+.-...-+|+|+|.|.|. +...|+.+. |..++|||+.+...++.+. ..++.|. ..
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~~~~~a~--------~~~~~~~----~~ 79 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPEMVAAAR--------ERGVDAR----TG 79 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHH--------hcCCcEE----Ec
Confidence 356676665566789999999983 555676663 3468999999877665543 3355442 12
Q ss_pred cccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 216 KVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 216 ~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
..+++.+ ...=+.++.|. +||+ . ....+|.. .+.|+|.-.+++.
T Consensus 80 d~~~~~~----~~~fD~v~~~~~l~~~-~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 80 DVRDWKP----KPDTDVVVSNAALQWV-P----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ChhhCCC----CCCceEEEEehhhhhC-C----CHHHHHHHHHHhCCCCcEEEEE
Confidence 2333321 11234555554 4553 2 23455554 5779998665543
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=86.77 E-value=4.6 Score=37.48 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=61.5
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEe
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCP 212 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~ 212 (416)
+++.+++.+.....-.|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.+++ +..|++ .++..
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~~i~~a~~~~----~~~~~~~v~~~~ 84 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPMSIANLERIK----AAENLDNLHTAV 84 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHHHHHHHHHHH----HHcCCCcceEEe
Confidence 34566666655455689999999886 33445654 2 38999999988777665443 334554 33322
Q ss_pred ccccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEE
Q 014896 213 VAEKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVT 265 (416)
Q Consensus 213 v~~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvt 265 (416)
..+.+++. . ..=+.++.+. +||+ . +.....++.. .+.|+|.-.+
T Consensus 85 --~d~~~~~~---~-~~fD~I~~~~~~~~~-~--~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 85 --VDLNNLTF---D-GEYDFILSTVVLMFL-E--AKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred --cChhhCCc---C-CCcCEEEEecchhhC-C--HHHHHHHHHHHHHHcCCCcEE
Confidence 22333221 1 1224454443 4443 1 1234455554 5778998753
No 16
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=86.28 E-value=2.7 Score=41.18 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=40.0
Q ss_pred cCCeeEEeeccccCccccHHHHHHHhcCCC--CCCeEEEeecCCCHHHHHHHHHHH
Q 014896 144 REDRVHIIDLDIMQGLQWPGLFHILASRPG--GPPYVRLTGLGTSMEALEATGKRL 197 (416)
Q Consensus 144 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~g--gpP~LRITgI~~~~~~l~~tg~rL 197 (416)
..+.++|.|.|.+.|--.-+|--.|++... ..+.++|+|++.+...|+.+.+..
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 346799999999999876666555554321 134789999999999888877654
No 17
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=85.97 E-value=4.3 Score=38.14 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=54.6
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccccccC
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNIS 228 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l~~~ 228 (416)
.|+|+|.|.|..-..|.+.+ |..++|||+.+.+.++.+.+++. ++.+ .. ....+ + +.-.
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~~l~~A~~~~~------~~~~--~~--~d~~~--~--~~~~ 104 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEYAVEKAKAYLP------NINI--IQ--GSLFD--P--FKDN 104 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHHHHHHHHhhCC------CCcE--EE--eeccC--C--CCCC
Confidence 59999999996554443322 23579999999988887665431 2222 21 11111 1 1001
Q ss_pred CCceEEEe-eecccccccCCCchHHHHHHHhcCCcEEEEeccCC
Q 014896 229 KREAVAVH-WLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQDL 271 (416)
Q Consensus 229 ~~EalaVn-~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlvE~ea 271 (416)
.=++++.+ .++|+ + +.....++..+.+..-+.++++|...
T Consensus 105 sfD~V~~~~vL~hl--~-p~~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 105 FFDLVLTKGVLIHI--N-PDNLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred CEEEEEECChhhhC--C-HHHHHHHHHHHHhhcCcEEEEEEeeC
Confidence 11334443 46664 1 23345566666666567788888643
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=85.39 E-value=4.8 Score=37.28 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=63.3
Q ss_pred HHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 014896 133 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCP 212 (416)
Q Consensus 133 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~ 212 (416)
.+...|++++.-...-+|+|+|.|.|.--. .|+.+ | .++|||+.+...++.+.++ ++..|++..+..
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~~~l~~a~~~----~~~~~~~v~~~~ 83 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNPASIASVLDM----KARENLPLRTDA 83 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCHHHHHHHHHH----HHHhCCCceeEe
Confidence 456788888876556799999999887433 34444 2 4799999988777665543 445567644432
Q ss_pred ccccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEE
Q 014896 213 VAEKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVV 264 (416)
Q Consensus 213 v~~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vv 264 (416)
. .+.... +. ..=+.++.+. +||+ . ......++.. .+.|+|.-.
T Consensus 84 ~--d~~~~~---~~-~~fD~I~~~~~~~~~-~--~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 84 Y--DINAAA---LN-EDYDFIFSTVVFMFL-Q--AGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred c--cchhcc---cc-CCCCEEEEecccccC-C--HHHHHHHHHHHHHHhCCCcE
Confidence 2 121111 11 1224444443 4443 1 1223455655 477899865
No 19
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=85.30 E-value=20 Score=34.84 Aligned_cols=130 Identities=16% Similarity=0.157 Sum_probs=71.5
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEec
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPV 213 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v 213 (416)
-...+++.+.-...-+|+|+|.|.|. +...|+.+. +|.-++|||+.+.+.++.+.++....++...-..+|..
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~- 133 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIE- 133 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEE-
Confidence 34444444443445689999999997 334555542 23458999999999888887765433332222344432
Q ss_pred cccccccCccccccCCC--ceEEEee-ecccccccCCCchHHHHH-HHhcCCcE-EEEeccCCCCCCChhHHHH
Q 014896 214 AEKVGNLDPERLNISKR--EAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKV-VTVVEQDLSPAGSFLGRFV 282 (416)
Q Consensus 214 ~~~~e~l~~~~l~~~~~--EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~v-vtlvE~ea~~~~~F~~RF~ 282 (416)
...+++. ..++ +++..+. +||. . +...+|.. .|-|+|.- ++++|-... +..|...+.
T Consensus 134 -~d~~~lp-----~~~~sfD~V~~~~~l~~~-~----d~~~~l~ei~rvLkpGG~l~i~d~~~~-~~~~~~~~~ 195 (261)
T PLN02233 134 -GDATDLP-----FDDCYFDAITMGYGLRNV-V----DRLKAMQEMYRVLKPGSRVSILDFNKS-TQPFTTSMQ 195 (261)
T ss_pred -cccccCC-----CCCCCEeEEEEecccccC-C----CHHHHHHHHHHHcCcCcEEEEEECCCC-CcHHHHHHH
Confidence 2233332 2222 4455554 4443 2 34455554 57899984 455554332 234555554
No 20
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=84.84 E-value=5.6 Score=39.20 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=60.0
Q ss_pred hHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecc
Q 014896 135 NQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVA 214 (416)
Q Consensus 135 NqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~ 214 (416)
.+.+++++..-+.-+|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.+ .++..|+++++...
T Consensus 109 ~~~~~~~~~~~~~~~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~ai~~~~~----~~~~~~l~v~~~~~- 174 (287)
T PRK12335 109 HSEVLEAVQTVKPGKALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQSLENLQE----IAEKENLNIRTGLY- 174 (287)
T ss_pred cHHHHHHhhccCCCCEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHH----HHHHcCCceEEEEe-
Confidence 3445555543222389999999886 33445554 2 589999999877766543 45556776655432
Q ss_pred ccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEE
Q 014896 215 EKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVV 264 (416)
Q Consensus 215 ~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vv 264 (416)
.+.+.. +. ..=+.++.+. +||+ . ......++.. -+.|+|.-+
T Consensus 175 -D~~~~~---~~-~~fD~I~~~~vl~~l-~--~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 175 -DINSAS---IQ-EEYDFILSTVVLMFL-N--RERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred -chhccc---cc-CCccEEEEcchhhhC-C--HHHHHHHHHHHHHhcCCCcE
Confidence 222211 10 1224444443 4543 2 1233455654 477899865
No 21
>PRK08317 hypothetical protein; Provisional
Probab=84.65 E-value=26 Score=32.23 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=36.0
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHH
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKR 196 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~r 196 (416)
+++.+.-...-+|+|+|.+.|. | ...++.+. +|.-++|||+.+...++.+.++
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~---~~~~a~~~--~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-D---ARELARRV--GPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-H---HHHHHHhc--CCCcEEEEEeCCHHHHHHHHHH
Confidence 5566665566789999998874 3 33344332 2456899999988777766554
No 22
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=84.33 E-value=4.4 Score=38.83 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=62.5
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEec
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPV 213 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v 213 (416)
-+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.+...++.+.+++. ..+|..
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~~i~~a~~~~~--------~~~~~~- 82 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPAMLAEARSRLP--------DCQFVE- 82 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHhCC--------CCeEEE-
Confidence 35567777665566789999999883 344556553 34689999999877766655421 133332
Q ss_pred cccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 214 AEKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 214 ~~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
...+++.+. ..=+.++.|. +||+ . ....+|.. .+.|+|.-.+++.
T Consensus 83 -~d~~~~~~~----~~fD~v~~~~~l~~~-~----d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 83 -ADIASWQPP----QALDLIFANASLQWL-P----DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred -CchhccCCC----CCccEEEEccChhhC-C----CHHHHHHHHHHhcCCCcEEEEE
Confidence 122222111 1224455554 4443 2 23345544 5789998776654
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=84.14 E-value=4.2 Score=41.20 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCC--CeEEEeccccccccCccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGL--PFEFCPVAEKVGNLDPER 224 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgv--pFeF~~v~~~~e~l~~~~ 224 (416)
.-.|+|+|.|.|. +...|+.+ | .++|||+.+.+.++.+.++ ++..++ ..+|.. .+.+++....
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae~l~~~~ 196 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDKNVKIARLH----ADMDPVTSTIEYLC--TTAEKLADEG 196 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHHHHHHHHHH----HHhcCcccceeEEe--cCHHHhhhcc
Confidence 3489999999887 45566643 3 4899999998877766544 222222 334433 2334432110
Q ss_pred cccCCCceEEEeeecccccccCCCchHHHHHH-HhcCCcEEEEec
Q 014896 225 LNISKREAVAVHWLQHSLYDVTGSDTNTLCLL-QRLAPKVVTVVE 268 (416)
Q Consensus 225 l~~~~~EalaVn~l~h~l~~~~~~~~~~L~~i-r~L~P~vvtlvE 268 (416)
-.-|=+++++.++|+. +...+|..+ +-|+|.-.+++.
T Consensus 197 --~~FD~Vi~~~vLeHv~-----d~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 197 --RKFDAVLSLEVIEHVA-----NPAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred --CCCCEEEEhhHHHhcC-----CHHHHHHHHHHHcCCCcEEEEE
Confidence 1123344445566742 234566554 568998666544
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.12 E-value=19 Score=37.94 Aligned_cols=111 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEec
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPV 213 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v 213 (416)
....+++.+.-...-+|+|+|.|.|. +...|+.+.+ .++|||+.+.+.++.+.++. ...+...+|...
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~~l~~A~~~~----~~~~~~v~~~~~ 321 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVNMISFALERA----IGRKCSVEFEVA 321 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHHh----hcCCCceEEEEc
Confidence 44567776654455689999999885 3445666542 48999999988777766543 233444555432
Q ss_pred cccccccCccccccCCC--ceEEE-eeecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 214 AEKVGNLDPERLNISKR--EAVAV-HWLQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 214 ~~~~e~l~~~~l~~~~~--EalaV-n~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
.+.++. ..++ +.++. +.++|. .....+|.. .+.|+|.-.+++.
T Consensus 322 --d~~~~~-----~~~~~fD~I~s~~~l~h~-----~d~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 322 --DCTKKT-----YPDNSFDVIYSRDTILHI-----QDKPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred --CcccCC-----CCCCCEEEEEECCccccc-----CCHHHHHHHHHHHcCCCeEEEEE
Confidence 122221 1112 22222 235554 123455554 5789998765543
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=82.95 E-value=7.1 Score=37.56 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=61.4
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccc
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAE 215 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~ 215 (416)
..|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|+|+.+.+.++.+.+++. ..|+.-....+..
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~~~l~~a~~~~~----~~g~~~~v~~~~~ 100 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSAEMIQRAKQAAE----AKGVSDNMQFIHC 100 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCHHHHHHHHHHHH----hcCCccceEEEEc
Confidence 34666665 345699999999993 44556655 2 479999999888887766543 3455322222223
Q ss_pred cccccCccccccCCCceEEEe-eecccccccCCCchHHHHH-HHhcCCcEEEE
Q 014896 216 KVGNLDPERLNISKREAVAVH-WLQHSLYDVTGSDTNTLCL-LQRLAPKVVTV 266 (416)
Q Consensus 216 ~~e~l~~~~l~~~~~EalaVn-~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtl 266 (416)
...++.+. .-..=++++.+ .++|+ . +...+|.. .+-|+|.-.++
T Consensus 101 d~~~l~~~--~~~~fD~V~~~~vl~~~-~----~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 101 AAQDIAQH--LETPVDLILFHAVLEWV-A----DPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred CHHHHhhh--cCCCCCEEEehhHHHhh-C----CHHHHHHHHHHHcCCCeEEE
Confidence 33333211 01122344433 34443 1 23455544 57799986654
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=82.20 E-value=8 Score=36.15 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=43.7
Q ss_pred hhHHHHhHHHHHhhh--cCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 129 FSHFTANQAIQEAFE--REDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 129 fa~~taNqaILeA~~--g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
.++-...+.+++.+. ..+.-+|+|+|.|.|. +...|+.+ ..++|||+.+.+.++.+.+++.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~-----~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKR-----GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHC-----CCEEEEEECCHHHHHHHHHHHH
Confidence 345566667777776 2456799999999885 55566654 1379999999888877776664
No 27
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=81.31 E-value=0.34 Score=39.29 Aligned_cols=95 Identities=26% Similarity=0.266 Sum_probs=44.6
Q ss_pred eeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecc-ccccccCccccccCC
Q 014896 151 IDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVA-EKVGNLDPERLNISK 229 (416)
Q Consensus 151 IDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~-~~~e~l~~~~l~~~~ 229 (416)
+|+|.+.|.==..|++.+ |..++|+++.+...++.+.+++.+.-. ..+++..+. ....+.... -.-
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~f 67 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLAELGN---DNFERLRFDVLDLFDYDPP---ESF 67 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC-------
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhcCC---cceeEEEeecCChhhcccc---ccc
Confidence 478888876555566555 889999999988777666665544332 222222211 111111110 122
Q ss_pred CceEEEeeecccccccCCCchHHHHHH-HhcCCcE
Q 014896 230 REAVAVHWLQHSLYDVTGSDTNTLCLL-QRLAPKV 263 (416)
Q Consensus 230 ~EalaVn~l~h~l~~~~~~~~~~L~~i-r~L~P~v 263 (416)
|=+++++.+||+ .....+|..+ +-|+|.-
T Consensus 68 D~V~~~~vl~~l-----~~~~~~l~~~~~~L~pgG 97 (99)
T PF08242_consen 68 DLVVASNVLHHL-----EDIEAVLRNIYRLLKPGG 97 (99)
T ss_dssp SEEEEE-TTS-------S-HHHHHHHHTTT-TSS-
T ss_pred ceehhhhhHhhh-----hhHHHHHHHHHHHcCCCC
Confidence 445556667776 2344666654 5577764
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=81.20 E-value=4.2 Score=39.55 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=62.7
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcccc
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l 225 (416)
...-|+|+|.|-| .|-+.+|+. | ..+|||+.+...++.+. ..|.+-|+..+|.... +|+|....
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se~~I~~Ak----~ha~e~gv~i~y~~~~--~edl~~~~- 122 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASEKPIEVAK----LHALESGVNIDYRQAT--VEDLASAG- 122 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCChHHHHHHH----Hhhhhccccccchhhh--HHHHHhcC-
Confidence 5678999999988 788888855 3 88999999888777764 3577788888887654 45543221
Q ss_pred ccCCCceEEEeeecccccccCCCchHHHH-HHHhcCCcEEEE
Q 014896 226 NISKREAVAVHWLQHSLYDVTGSDTNTLC-LLQRLAPKVVTV 266 (416)
Q Consensus 226 ~~~~~EalaVn~l~h~l~~~~~~~~~~L~-~ir~L~P~vvtl 266 (416)
+-.=+|-|+ +++..++ ..+.+++ ..+-++|.-+++
T Consensus 123 ----~~FDvV~cm-EVlEHv~-dp~~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 123 ----GQFDVVTCM-EVLEHVP-DPESFLRACAKLVKPGGILF 158 (243)
T ss_pred ----CCccEEEEh-hHHHccC-CHHHHHHHHHHHcCCCcEEE
Confidence 222233443 1222223 2334554 467789975543
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=79.99 E-value=2.5 Score=34.40 Aligned_cols=54 Identities=33% Similarity=0.418 Sum_probs=35.8
Q ss_pred EeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 014896 150 IIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFC 211 (416)
Q Consensus 150 IIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~ 211 (416)
|+|+|.|.|.-=..|.+.+ .+ + |..++|||+.+.+.++.+.++..+ .+++.+|.
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~ 54 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPEMLELAKKRFSE----DGPKVRFV 54 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSHH----TTTTSEEE
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHHHHHHHHHhchh----cCCceEEE
Confidence 7999999998777777766 22 2 569999999999988877766554 45566663
No 30
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=79.75 E-value=8.1 Score=36.06 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=52.9
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccccccC
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNIS 228 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l~~~ 228 (416)
+|+|+|.+.|. +...++.+. |..++|||+.+.+.++.+.+++. ..|+.-....+.....+.... .
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~~~~~a~~~~~----~~gl~~~i~~~~~d~~~~~~~----~ 66 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPEQAEVGRERIR----ALGLQGRIRIFYRDSAKDPFP----D 66 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH----hcCCCcceEEEecccccCCCC----C
Confidence 68999988775 344555543 34689999998877777666543 345543222222222111110 1
Q ss_pred CCceEE-EeeecccccccCCCchHHHHHH-HhcCCcEEEE
Q 014896 229 KREAVA-VHWLQHSLYDVTGSDTNTLCLL-QRLAPKVVTV 266 (416)
Q Consensus 229 ~~Eala-Vn~l~h~l~~~~~~~~~~L~~i-r~L~P~vvtl 266 (416)
.=+.++ ++.++|. .....++..+ +.|+|.-.++
T Consensus 67 ~fD~I~~~~~l~~~-----~~~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 67 TYDLVFGFEVIHHI-----KDKMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred CCCEeehHHHHHhC-----CCHHHHHHHHHHHcCCCCEEE
Confidence 112333 3345553 2244666654 6699985543
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=79.42 E-value=14 Score=38.84 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=33.4
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEAT 193 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~t 193 (416)
..|++.+.....-+|+|+|.|.|.-- ..|+.+. -++|||+.+...++..
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~~-----~~v~giD~s~~~l~~a 75 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKKA-----GQVIALDFIESVIKKN 75 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhhC-----CEEEEEeCCHHHHHHH
Confidence 45666666544458999999999543 4455442 1789999988777653
No 32
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=78.56 E-value=17 Score=36.18 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=38.7
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
...|||+|.|.|.-=..|++++.. ..++|+|+.+.+.|+.+.++|.+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALAA 110 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHHh
Confidence 357999999999776778887742 47799999999999999888864
No 33
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=76.40 E-value=12 Score=34.76 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=58.2
Q ss_pred hHHHHHhhhc---CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 014896 135 NQAIQEAFER---EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFC 211 (416)
Q Consensus 135 NqaILeA~~g---~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~ 211 (416)
.+.+++.+.. .+..+|+|+|.|.|.- ...|+.+- |..++|+|+.+...++.+..++.. + ++|
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~----~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~-----~--~~~- 84 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYL----TRALLKRF---PQAEFIALDISAGMLAQAKTKLSE-----N--VQF- 84 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHH----HHHHHHhC---CCCcEEEEeChHHHHHHHHHhcCC-----C--CeE-
Confidence 3344444442 3346899999999963 33333331 456799999988777666654431 2 222
Q ss_pred eccccccccCccccccCCCceEEEee-ecccccccCCCchHHHHHH-HhcCCcEEEEec
Q 014896 212 PVAEKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCLL-QRLAPKVVTVVE 268 (416)
Q Consensus 212 ~v~~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~i-r~L~P~vvtlvE 268 (416)
+...++++... -..-++++.+. +||. .+...+|..+ +.|+|.-+++..
T Consensus 85 -~~~d~~~~~~~---~~~fD~vi~~~~l~~~-----~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 85 -ICGDAEKLPLE---DSSFDLIVSNLALQWC-----DDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred -EecchhhCCCC---CCceeEEEEhhhhhhc-----cCHHHHHHHHHHHcCCCcEEEEE
Confidence 22233332211 11224444443 4443 2334566554 668998665543
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=76.24 E-value=12 Score=37.06 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=63.6
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccc
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAE 215 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~ 215 (416)
..|+|.+.=+.-=||+|+|.| |-++...+|++.| .++|||..+.+..+.+.++ ++..|++=....+..
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~Q~~~a~~~----~~~~gl~~~v~v~~~ 119 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEEQAEYARER----IREAGLEDRVEVRLQ 119 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HHHHHHHHHH----HHCSTSSSTEEEEES
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEEe
Confidence 455666554455599999766 8889999998863 5899999987766665544 456687632222223
Q ss_pred cccccCccccccCCCceEEEeeecccccccCCCchHHHHHH-HhcCCcEEEEec
Q 014896 216 KVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLL-QRLAPKVVTVVE 268 (416)
Q Consensus 216 ~~e~l~~~~l~~~~~EalaVn~l~h~l~~~~~~~~~~L~~i-r~L~P~vvtlvE 268 (416)
...+++. .-|-++.|-.+-|+- ....+.+++.+ +-|+|.-..++.
T Consensus 120 D~~~~~~-----~fD~IvSi~~~Ehvg---~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 120 DYRDLPG-----KFDRIVSIEMFEHVG---RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -GGG--------S-SEEEEESEGGGTC---GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred eccccCC-----CCCEEEEEechhhcC---hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 3333332 234455555555541 12335667665 679998765543
No 35
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=74.97 E-value=26 Score=36.27 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRL 197 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL 197 (416)
..|++.+.-+..=+|+|+|.|.|. +...++.+.+ .++|||+.+.+.++.+.++.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHHHHHHHHHHh
Confidence 345555543444589999987664 5556665543 48999999988887777665
No 36
>PRK05785 hypothetical protein; Provisional
Probab=74.35 E-value=34 Score=32.56 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=28.9
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHH
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGK 195 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~ 195 (416)
.-.|+|+|.|.|.- ...|+.+.+ .++|||+.+.+-++.+..
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCCHHHHHHHHh
Confidence 45799999999943 334454431 489999999887776543
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=74.00 E-value=3 Score=32.48 Aligned_cols=90 Identities=24% Similarity=0.237 Sum_probs=47.5
Q ss_pred eeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccccccCCC
Q 014896 151 IDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKR 230 (416)
Q Consensus 151 IDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l~~~~~ 230 (416)
+|+|.+.|.....|.+. +..++|+++.+.+.++.+.+++. ..+++ |. ..+.+++ ...++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~----~~~~~--~~--~~d~~~l-----~~~~~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK----NEGVS--FR--QGDAEDL-----PFPDN 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT----TSTEE--EE--ESBTTSS-----SS-TT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc----ccCch--he--eehHHhC-----ccccc
Confidence 58888888766555544 45789999999887766655442 23333 11 2223333 22333
Q ss_pred c--eEEE-eeecccccccCCCchHHHHH-HHhcCCcEEEE
Q 014896 231 E--AVAV-HWLQHSLYDVTGSDTNTLCL-LQRLAPKVVTV 266 (416)
Q Consensus 231 E--alaV-n~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtl 266 (416)
- ++.. +.++|. .....++.. .|-|+|.-..+
T Consensus 60 sfD~v~~~~~~~~~-----~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 60 SFDVVFSNSVLHHL-----EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp -EEEEEEESHGGGS-----SHHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccceeec-----cCHHHHHHHHHHHcCcCeEEe
Confidence 2 2332 335554 234455544 57788876544
No 38
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=73.72 E-value=24 Score=35.63 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=57.4
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHH-c-CCCeEEEeccccccccCcc
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEK-L-GLPFEFCPVAEKVGNLDPE 223 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~-l-gvpFeF~~v~~~~e~l~~~ 223 (416)
+.-.|+|+|.|.|. +...|+.+ | .++|||+.+...++.+.++..+.-.. . +...+|... .+++++
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl~~l~-- 210 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN--DLESLS-- 210 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--chhhcC--
Confidence 45689999999886 44556554 2 48999999998888877765432100 1 223445432 233321
Q ss_pred ccccCCCceEEEeeecccccccCCCchHHHHHHHhcCCcEEEEe
Q 014896 224 RLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVV 267 (416)
Q Consensus 224 ~l~~~~~EalaVn~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlv 267 (416)
-.-|-++....++|... ......+..++++.|..+++.
T Consensus 211 ---~~fD~Vv~~~vL~H~p~---~~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 211 ---GKYDTVTCLDVLIHYPQ---DKADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred ---CCcCEEEEcCEEEecCH---HHHHHHHHHHHhhcCCEEEEE
Confidence 11122222334566321 122345666777778777664
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=73.32 E-value=24 Score=34.10 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=53.1
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l 225 (416)
.=+|+|+|.|.|.--. + ++... .|.-+||+|+.+...++.+.++. +..|++ .+|. ...++++.
T Consensus 78 g~~VLDiG~G~G~~~~-~---~a~~~--g~~~~v~gvD~s~~~l~~A~~~~----~~~g~~~v~~~--~~d~~~l~---- 141 (272)
T PRK11873 78 GETVLDLGSGGGFDCF-L---AARRV--GPTGKVIGVDMTPEMLAKARANA----RKAGYTNVEFR--LGEIEALP---- 141 (272)
T ss_pred CCEEEEeCCCCCHHHH-H---HHHHh--CCCCEEEEECCCHHHHHHHHHHH----HHcCCCCEEEE--EcchhhCC----
Confidence 3389999998874222 1 22221 14458999999988777766654 334543 3332 22344332
Q ss_pred ccCCC--ceEEEeeecccccccCCCchHHHH-HHHhcCCcEEE
Q 014896 226 NISKR--EAVAVHWLQHSLYDVTGSDTNTLC-LLQRLAPKVVT 265 (416)
Q Consensus 226 ~~~~~--EalaVn~l~h~l~~~~~~~~~~L~-~ir~L~P~vvt 265 (416)
..++ +.++.|+..|... ....++. ..+-|+|.-.+
T Consensus 142 -~~~~~fD~Vi~~~v~~~~~----d~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 142 -VADNSVDVIISNCVINLSP----DKERVFKEAFRVLKPGGRF 179 (272)
T ss_pred -CCCCceeEEEEcCcccCCC----CHHHHHHHHHHHcCCCcEE
Confidence 1222 3455566544322 2334454 46789998544
No 40
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=73.29 E-value=72 Score=29.58 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=55.9
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l 225 (416)
.-.|+|+|.|.|.. ++ .++.+. |..++|+|+.+.+.++.+.++ ++..|++ ++|.. .+.+++..
T Consensus 46 g~~VLDiGcGtG~~--al--~la~~~---~~~~V~giD~s~~~l~~A~~~----~~~~~l~~i~~~~--~d~~~~~~--- 109 (187)
T PRK00107 46 GERVLDVGSGAGFP--GI--PLAIAR---PELKVTLVDSLGKKIAFLREV----AAELGLKNVTVVH--GRAEEFGQ--- 109 (187)
T ss_pred CCeEEEEcCCCCHH--HH--HHHHHC---CCCeEEEEeCcHHHHHHHHHH----HHHcCCCCEEEEe--ccHhhCCC---
Confidence 34699999998832 22 223221 346899999998877776554 4445664 44443 33444322
Q ss_pred ccCCCceEEEeeecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 226 NISKREAVAVHWLQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 226 ~~~~~EalaVn~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
-.+-+.+..|.. ...+.++.. .+.|+|.-.+++.
T Consensus 110 -~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 110 -EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred -CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 123455555532 223456654 5789998666554
No 41
>PLN02244 tocopherol O-methyltransferase
Probab=72.58 E-value=32 Score=34.88 Aligned_cols=97 Identities=19% Similarity=0.075 Sum_probs=53.2
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC--eEEEeccccccccCcc
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP--FEFCPVAEKVGNLDPE 223 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp--FeF~~v~~~~e~l~~~ 223 (416)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+...++.+.++ ++..|+. .+|.. ....++...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~~i~~a~~~----~~~~g~~~~v~~~~--~D~~~~~~~ 183 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPVQAARANAL----AAAQGLSDKVSFQV--ADALNQPFE 183 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHHHHHHHHHH----HHhcCCCCceEEEE--cCcccCCCC
Confidence 34579999999885 4556665542 3899999988766655443 3444552 45542 222222211
Q ss_pred ccccCCCceEE-EeeecccccccCCCchHHHHH-HHhcCCcEE
Q 014896 224 RLNISKREAVA-VHWLQHSLYDVTGSDTNTLCL-LQRLAPKVV 264 (416)
Q Consensus 224 ~l~~~~~Eala-Vn~l~h~l~~~~~~~~~~L~~-ir~L~P~vv 264 (416)
-..=++|+ +..++|.. +...++.. .|-|+|.-.
T Consensus 184 ---~~~FD~V~s~~~~~h~~-----d~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 184 ---DGQFDLVWSMESGEHMP-----DKRKFVQELARVAAPGGR 218 (340)
T ss_pred ---CCCccEEEECCchhccC-----CHHHHHHHHHHHcCCCcE
Confidence 01113333 33456641 23455544 578999744
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=71.40 E-value=12 Score=37.35 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=66.8
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccc
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAE 215 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~ 215 (416)
..|++-+.=+.--||+|||.| |-+|+...|.+.| +++|||+.+.+.+..+.+++ +..|++=..+.+..
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS~~Q~~~~~~r~----~~~gl~~~v~v~l~ 129 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLSEEQLAYAEKRI----AARGLEDNVEVRLQ 129 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCCHHHHHHHHHHH----HHcCCCcccEEEec
Confidence 334444444567899999665 9999999998864 78999999987776665554 45666622222333
Q ss_pred cccccCccccccCCCceEEEeeecccccccCCCchHHHHHH-HhcCCcEE
Q 014896 216 KVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLL-QRLAPKVV 264 (416)
Q Consensus 216 ~~e~l~~~~l~~~~~EalaVn~l~h~l~~~~~~~~~~L~~i-r~L~P~vv 264 (416)
.+.++... -|-+|.|-...|.- ...-+.++..+ +-|+|.-.
T Consensus 130 d~rd~~e~-----fDrIvSvgmfEhvg---~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 130 DYRDFEEP-----FDRIVSVGMFEHVG---KENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred cccccccc-----cceeeehhhHHHhC---cccHHHHHHHHHhhcCCCce
Confidence 44444332 34555555455541 12345677766 44777644
No 43
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=71.23 E-value=28 Score=35.17 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=56.3
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecccc
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEK 216 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~ 216 (416)
+|++.+...+.=+|+|+|.|.|. ++..++.+ |+- +++||+++...+.+. +...+++.. .-...+.. ..
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~~--~v~GiDpS~~ml~q~-~~~~~~~~~-~~~v~~~~--~~ 179 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GAK--SLVGIDPTVLFLCQF-EAVRKLLDN-DKRAILEP--LG 179 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CCC--EEEEEcCCHHHHHHH-HHHHHHhcc-CCCeEEEE--CC
Confidence 45555443334489999999986 33444433 332 689999987655442 222222211 11233322 23
Q ss_pred ccccCccccccCCCceEEEe-eecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 217 VGNLDPERLNISKREAVAVH-WLQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 217 ~e~l~~~~l~~~~~EalaVn-~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
++++... ..=+++..+ .++|. .+...+|.. -+.|+|.-.++++
T Consensus 180 ie~lp~~----~~FD~V~s~gvL~H~-----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 180 IEQLHEL----YAFDTVFSMGVLYHR-----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHHCCCC----CCcCEEEEcchhhcc-----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 4444321 122344433 45664 123455554 4679998555443
No 44
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=69.43 E-value=12 Score=32.81 Aligned_cols=50 Identities=26% Similarity=0.390 Sum_probs=32.7
Q ss_pred hcCCeeEEeeccccCccccHHHHHHHhcCCC-CCCeEEEeecCCCHHHHHHHHHH
Q 014896 143 EREDRVHIIDLDIMQGLQWPGLFHILASRPG-GPPYVRLTGLGTSMEALEATGKR 196 (416)
Q Consensus 143 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~g-gpP~LRITgI~~~~~~l~~tg~r 196 (416)
...+..+|||||-|.|. |=+.|+..-. -.|.++|++|+.....++.+-++
T Consensus 22 ~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred ccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHH
Confidence 45789999999999884 3333333100 02789999999887655444444
No 45
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=68.30 E-value=49 Score=30.28 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHH
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEAT 193 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~t 193 (416)
.|.+.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+.+.+.++.+
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s~~~i~~a 52 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEIDQDGVLAC 52 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCCHHHHHHH
Confidence 344555432 379999999985 5566765532 3569999887666554
No 46
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=66.06 E-value=43 Score=25.33 Aligned_cols=39 Identities=41% Similarity=0.447 Sum_probs=26.5
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHH
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGK 195 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~ 195 (416)
+|+|+|.+.|. +...++. .+..++++++.+...++.+.+
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~~~~~~~~~~ 39 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDISPVALELARK 39 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCCHHHHHHHHH
Confidence 47899988874 4555554 245789999988766655443
No 47
>PRK04148 hypothetical protein; Provisional
Probab=64.87 E-value=25 Score=31.22 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHH---------------------------
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEAL--------------------------- 190 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l--------------------------- 190 (416)
|.+....++.-.|+|.|+|+|..-.. .|++. | ..+|+|+.+...+
T Consensus 8 l~~~~~~~~~~kileIG~GfG~~vA~---~L~~~-G----~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIGFYFKVAK---KLKES-G----FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHhcccccCCEEEEEEecCCHHHHH---HHHHC-C----CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCC
Confidence 55555555556899999997754443 44432 2 3677777543322
Q ss_pred --------HHHHHHHHHHHHHcCCCeEEEecc
Q 014896 191 --------EATGKRLSDFAEKLGLPFEFCPVA 214 (416)
Q Consensus 191 --------~~tg~rL~~~A~~lgvpFeF~~v~ 214 (416)
.|...-+.+.|++.|.++-+.++.
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 344566777777777777777664
No 48
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=63.52 E-value=50 Score=33.45 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=81.6
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccc----cC
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGN----LD 221 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~----l~ 221 (416)
...|||||-|.|..=..||++|..+ + ...+-.+|+-+.+.|+++.++|. .-..| .++.+|.....+ +.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~-~--~~~~Y~plDIS~~~L~~a~~~L~----~~~~p~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQ-K--KSVDYYALDVSRSELQRTLAELP----LGNFSHVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc-C--CCceEEEEECCHHHHHHHHHhhh----hccCCCeEEEEEEecHHHHHhhcc
Confidence 3479999999999999999999732 2 23678999999999999999987 12345 777777543322 11
Q ss_pred ccccccCCCceEEEeeecccccc-cCCCchHHHHHHHh--cCCcEEEEeccC----------CCCCC-C-hhHHHHHHHH
Q 014896 222 PERLNISKREAVAVHWLQHSLYD-VTGSDTNTLCLLQR--LAPKVVTVVEQD----------LSPAG-S-FLGRFVEAIH 286 (416)
Q Consensus 222 ~~~l~~~~~EalaVn~l~h~l~~-~~~~~~~~L~~ir~--L~P~vvtlvE~e----------a~~~~-~-F~~RF~eaL~ 286 (416)
... ..+...+|-|+=-.+.. .+..-..+|+.+++ |+|.-..++--| +.+.+ . ......+.|+
T Consensus 150 ~~~---~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~ 226 (319)
T TIGR03439 150 RPE---NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLV 226 (319)
T ss_pred ccc---ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHH
Confidence 100 11223334332111111 11122357888876 899755444333 22222 2 3344456677
Q ss_pred HHHHHHHh
Q 014896 287 YYSALFDS 294 (416)
Q Consensus 287 yYsalFDs 294 (416)
+-...++.
T Consensus 227 ~~Nr~Lg~ 234 (319)
T TIGR03439 227 HANEILGS 234 (319)
T ss_pred HHHHHhCc
Confidence 77777664
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=63.07 E-value=20 Score=29.40 Aligned_cols=44 Identities=18% Similarity=0.096 Sum_probs=31.0
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
+|+|+|.+.|.. ...++.+. |..++|+|+.+...++.+.+++..
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~~~~~~a~~~~~~ 65 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNPEALRLIERNARR 65 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCHHHHHHHHHHHHH
Confidence 899999988754 33444442 347899999998877777665544
No 50
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=62.50 E-value=34 Score=33.23 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHccCCccchhHHHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHH
Q 014896 109 HTQKMVSAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSME 188 (416)
Q Consensus 109 ~~~~~~~a~~~f~~~~P~~kfa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~ 188 (416)
...++..+.+.|.+..=|-.+... .++.|.+.+ ....-+|+|+|.|.|.--..|.+.+... ....++||+.+..
T Consensus 50 d~~~~~~ar~~fl~~g~y~~l~~~-i~~~l~~~l-~~~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~ 123 (272)
T PRK11088 50 DNKEMMQARRAFLDAGHYQPLRDA-VANLLAERL-DEKATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKV 123 (272)
T ss_pred cCHHHHHHHHHHHHCCChHHHHHH-HHHHHHHhc-CCCCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHH
Confidence 345777887777654322222211 112232332 2344679999999996444444433211 1257999999988
Q ss_pred HHHHHHH
Q 014896 189 ALEATGK 195 (416)
Q Consensus 189 ~l~~tg~ 195 (416)
.++.+.+
T Consensus 124 ~l~~A~~ 130 (272)
T PRK11088 124 AIKYAAK 130 (272)
T ss_pred HHHHHHH
Confidence 7766544
No 51
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=62.11 E-value=77 Score=32.59 Aligned_cols=99 Identities=22% Similarity=0.214 Sum_probs=58.8
Q ss_pred eEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCccccc
Q 014896 148 VHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERLN 226 (416)
Q Consensus 148 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l~ 226 (416)
-+|+|++.|.|. +--.||.+ + -+++||+.+...++.+.+++ +..|++ .+|.. .+++++... +
T Consensus 235 ~~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~~~av~~a~~N~----~~~~~~~~~~~~--~d~~~~~~~-~- 297 (374)
T TIGR02085 235 TQMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIESEAIACAQQSA----QMLGLDNLSFAA--LDSAKFATA-Q- 297 (374)
T ss_pred CEEEEccCCccH----HHHHHhhc-C----CeEEEEECCHHHHHHHHHHH----HHcCCCcEEEEE--CCHHHHHHh-c-
Confidence 378999988772 32344433 2 37999999988887777654 344653 44432 233332111 1
Q ss_pred cCCCceEEEeeecccccccCCCchHHHHHHHhcCCcEEEEecc
Q 014896 227 ISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQ 269 (416)
Q Consensus 227 ~~~~EalaVn~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlvE~ 269 (416)
...-+++++|= . ..+....++..|.+++|+-++.++-
T Consensus 298 ~~~~D~vi~DP-----P-r~G~~~~~l~~l~~~~p~~ivyvsc 334 (374)
T TIGR02085 298 MSAPELVLVNP-----P-RRGIGKELCDYLSQMAPKFILYSSC 334 (374)
T ss_pred CCCCCEEEECC-----C-CCCCcHHHHHHHHhcCCCeEEEEEe
Confidence 11235666651 1 1355667888888999987777763
No 52
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=61.27 E-value=13 Score=36.04 Aligned_cols=107 Identities=23% Similarity=0.231 Sum_probs=61.4
Q ss_pred HHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecccccc
Q 014896 139 QEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVG 218 (416)
Q Consensus 139 LeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e 218 (416)
|.-+.-+.--.|+|+|.|.|-+= +.|++|- |-=.||||+++.+-|+++.++| ....|..- .+.
T Consensus 23 la~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~~Mla~Aa~rl--------p~~~f~~a--Dl~ 85 (257)
T COG4106 23 LARVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSPAMLAKAAQRL--------PDATFEEA--DLR 85 (257)
T ss_pred HhhCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCHHHHHHHHHhC--------CCCceecc--cHh
Confidence 33344455667999999999654 4556664 4556999999998887765544 33333310 111
Q ss_pred ccCccccccCCCceEEEeeecccccccCCCchHHHHHHHhcCCcEEEEecc
Q 014896 219 NLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQ 269 (416)
Q Consensus 219 ~l~~~~l~~~~~EalaVn~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlvE~ 269 (416)
+.+++ .+-..+.-|..+|-+.|- .+-+-+++-.|.|.-+.-|-.
T Consensus 86 ~w~p~----~~~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 86 TWKPE----QPTDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hcCCC----Cccchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEEC
Confidence 22221 122344447655544331 222335577899988765554
No 53
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=61.16 E-value=94 Score=31.02 Aligned_cols=100 Identities=21% Similarity=0.195 Sum_probs=60.0
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l 225 (416)
.-+|+|++.|.|. +--.||.+ + -+++||+.+...++.+.++. +..|++ .+|.. .+.+++... .
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~av~~A~~n~----~~~~l~~v~~~~--~D~~~~~~~-~ 237 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAEAIACAKQSA----AELGLTNVQFQA--LDSTQFATA-Q 237 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHHHHHHHHHHH----HHcCCCceEEEE--cCHHHHHHh-c
Confidence 4589999999885 33445543 2 37999999988887776554 455664 55543 223332111 0
Q ss_pred ccCCCceEEEeeecccccccCCCchHHHHHHHhcCCcEEEEecc
Q 014896 226 NISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQ 269 (416)
Q Consensus 226 ~~~~~EalaVn~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlvE~ 269 (416)
...-+++++|= ...+....++..+.+++|+.++.+.-
T Consensus 238 -~~~~D~Vv~dP------Pr~G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 238 -GEVPDLVLVNP------PRRGIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred -CCCCeEEEECC------CCCCccHHHHHHHHHcCCCeEEEEEC
Confidence 01224555551 12244556778888999988776654
No 54
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=59.26 E-value=1.4e+02 Score=28.02 Aligned_cols=104 Identities=17% Similarity=0.055 Sum_probs=56.8
Q ss_pred eEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCccccc
Q 014896 148 VHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERLN 226 (416)
Q Consensus 148 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l~ 226 (416)
-.|+|++.|.|. --|.+|+.. . -++|+|+.+.+.++.+.+++.. +|+. .+|. ..++.+.-.. .
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~---a--~~V~~vE~~~~a~~~a~~Nl~~----~~~~~v~~~--~~D~~~~l~~-~- 118 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRY---A--AGATLLEMDRAVAQQLIKNLAT----LKAGNARVV--NTNALSFLAQ-P- 118 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcC---C--CEEEEEECCHHHHHHHHHHHHH----hCCCcEEEE--EchHHHHHhh-c-
Confidence 478999998882 224456543 1 3799999888777766555443 3443 3332 2222221010 0
Q ss_pred cCCCceEEEeeecccccccCCCchHHHHHHHh---cCCcEEEEeccCCC
Q 014896 227 ISKREAVAVHWLQHSLYDVTGSDTNTLCLLQR---LAPKVVTVVEQDLS 272 (416)
Q Consensus 227 ~~~~EalaVn~l~h~l~~~~~~~~~~L~~ir~---L~P~vvtlvE~ea~ 272 (416)
..+=+.+++|=-. ..+-...++..|.. ++|+-++++|....
T Consensus 119 ~~~fDlV~~DPPy-----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 119 GTPHNVVFVDPPF-----RKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCceEEEECCCC-----CCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 0112444444211 12334556777766 68999999987554
No 55
>PRK06922 hypothetical protein; Provisional
Probab=58.20 E-value=39 Score=37.69 Aligned_cols=108 Identities=14% Similarity=0.199 Sum_probs=59.6
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLN 226 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l~ 226 (416)
.-.|+|+|.|.|. ++..|+.+. |..++|||+.+...++.+.+++. ..|.++++. ..+..++. ..
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~MLe~Ararl~----~~g~~ie~I--~gDa~dLp-~~-- 482 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISENVIDTLKKKKQ----NEGRSWNVI--KGDAINLS-SS-- 482 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHhh----hcCCCeEEE--EcchHhCc-cc--
Confidence 3579999999884 445566552 56899999999988887766542 234555442 22222221 00
Q ss_pred cCCC--ceEEEee-ecccccccC--------CCchHHHHH-HHhcCCcE-EEEeccC
Q 014896 227 ISKR--EAVAVHW-LQHSLYDVT--------GSDTNTLCL-LQRLAPKV-VTVVEQD 270 (416)
Q Consensus 227 ~~~~--EalaVn~-l~h~l~~~~--------~~~~~~L~~-ir~L~P~v-vtlvE~e 270 (416)
..++ ++++.|. +||++...+ .....+|.. .+.|+|.- ++++|..
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 1222 4454554 454432111 112345544 58899984 4555543
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=57.79 E-value=46 Score=30.88 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=31.5
Q ss_pred CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 145 EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 145 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
...-.|+|+|.|.|.- ...|+.+ + .++|||+.+...++.+.+++.
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCHHHHHHHHHHHH
Confidence 3456899999998853 3344443 2 249999999888887776653
No 57
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=57.34 E-value=24 Score=36.03 Aligned_cols=114 Identities=18% Similarity=0.198 Sum_probs=66.1
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEec
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPV 213 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v 213 (416)
....+++.+.....=+|+|+|.|.|. +-..++.+. |..++|+|+.+...++.+.+++.. .++..++...
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~Al~~A~~nl~~----n~l~~~~~~~ 252 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAAALESSRATLAA----NGLEGEVFAS 252 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCCCEEEEc
Confidence 44666777764433379999999886 444555542 457899999999888888776654 4565555431
Q ss_pred cccccccCccccccCCCceEEEeeeccccccc-CCCchHHHHH-HHhcCCcEEE
Q 014896 214 AEKVGNLDPERLNISKREAVAVHWLQHSLYDV-TGSDTNTLCL-LQRLAPKVVT 265 (416)
Q Consensus 214 ~~~~e~l~~~~l~~~~~EalaVn~l~h~l~~~-~~~~~~~L~~-ir~L~P~vvt 265 (416)
+. ++ .+ -.+=+.++.|-.+|-..+. ......++.. .+.|+|.-..
T Consensus 253 --D~--~~--~~-~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 253 --NV--FS--DI-KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred --cc--cc--cc-CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence 11 11 11 1234677778654531111 1112344443 4668997543
No 58
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=56.10 E-value=21 Score=33.79 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=30.0
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSM 187 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~ 187 (416)
..++++..=...-+|||+|-+.|. +..+|+.+. |.+|+|..+.|.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~ 134 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPE 134 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HH
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHh
Confidence 455666665566689999999993 344444443 789999998764
No 59
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=53.16 E-value=43 Score=31.24 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=49.3
Q ss_pred ccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccC
Q 014896 158 GLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLD 221 (416)
Q Consensus 158 G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~ 221 (416)
+..||.++..+..+...-+.-.|+-.+.+.+.|+.++.-..++++..|.++++..-.+.-+.|+
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~ 72 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALE 72 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhC
Confidence 3789988887776766666567777777889999999999999999999999887654444444
No 60
>PRK07402 precorrin-6B methylase; Provisional
Probab=52.98 E-value=61 Score=29.69 Aligned_cols=64 Identities=11% Similarity=0.085 Sum_probs=42.1
Q ss_pred hhHHHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 129 FSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 129 fa~~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
...--..+.+++.+.-...=.|+|+|.|.|.- . ..++... |.-++|+|+.+.+.++.+.+++.+
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~-~---~~la~~~---~~~~V~~vD~s~~~~~~a~~n~~~ 86 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTI-P---VEAGLLC---PKGRVIAIERDEEVVNLIRRNCDR 86 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHH-H---HHHHHHC---CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 44555666677777644445799999999862 2 2223221 235899999998888777766654
No 61
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=52.75 E-value=29 Score=32.60 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=39.9
Q ss_pred HHhhhcCCeeEEeeccccCc---cccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHH
Q 014896 139 QEAFEREDRVHIIDLDIMQG---LQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFA 201 (416)
Q Consensus 139 LeA~~g~~~VHIIDf~i~~G---~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A 201 (416)
|-+++=.+.=|++|+|-+.| .+|. + + .|..|+++|+.+.+.++.+.++..+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~----~-----~p~~~v~AIe~~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-L----A-----GPSGRVIAIERDEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-H----h-----CCCceEEEEecCHHHHHHHHHHHHHhC
Confidence 34455444449999999988 6775 2 1 478999999999999988888877664
No 62
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=51.45 E-value=29 Score=31.23 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=44.9
Q ss_pred HHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC
Q 014896 133 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP 207 (416)
Q Consensus 133 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp 207 (416)
.+...+++.+...+.=+|+|+|.|.|.- =-.|+.+ -|..++|+++.+...++.+.+.+ +..+++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i----~~~la~~---~~~~~v~~vDi~~~a~~~a~~n~----~~n~~~ 81 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVI----SLALAKR---GPDAKVTAVDINPDALELAKRNA----ERNGLE 81 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHH----HHHHHHT---STCEEEEEEESBHHHHHHHHHHH----HHTTCT
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHH----HHHHHHh---CCCCEEEEEcCCHHHHHHHHHHH----HhcCcc
Confidence 3556778888766777799999998842 2234444 36788999999988887776553 445665
No 63
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=51.00 E-value=36 Score=30.43 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRL 197 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL 197 (416)
+.|++.+.-...=+|+|+|.|.|. |...|+.+ + -++|+|+.+...++.+.+++
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~~~~~~~~~~~ 55 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDPRLAPRLREKF 55 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCHHHHHHHHHHh
Confidence 346666654444489999999875 55556655 2 37999999987777766555
No 64
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=50.70 E-value=2.5e+02 Score=27.33 Aligned_cols=186 Identities=19% Similarity=0.264 Sum_probs=103.2
Q ss_pred CCccchhH-HHHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHH
Q 014896 124 SPFVKFSH-FTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAE 202 (416)
Q Consensus 124 ~P~~kfa~-~taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~ 202 (416)
.+++.|+. .+=+++..+.+.-.+--+|+|.+.|.|- +.-.|++.-| .-+|||++.+..-|+.+.+++.+.
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd----~a~~~~k~~g---~g~v~~~D~s~~ML~~a~~k~~~~-- 98 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD----MALLLAKSVG---TGEVVGLDISESMLEVAREKLKKK-- 98 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH----HHHHHHHhcC---CceEEEEECCHHHHHHHHHHhhcc--
Confidence 45666664 5667777776654578899999998873 2333444433 789999999999888888776543
Q ss_pred HcCCC-eEEEeccccccccCccccccCCC--ceEEEeeecccccccCCCchHHHHH-HHhcCCcEEEE-eccCCCCCCCh
Q 014896 203 KLGLP-FEFCPVAEKVGNLDPERLNISKR--EAVAVHWLQHSLYDVTGSDTNTLCL-LQRLAPKVVTV-VEQDLSPAGSF 277 (416)
Q Consensus 203 ~lgvp-FeF~~v~~~~e~l~~~~l~~~~~--EalaVn~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtl-vE~ea~~~~~F 277 (416)
|+. ++| |..+.++|-. .++ +++.+.+-.|.. ...+.+|+- -|=|+|....+ .|-.--.++.|
T Consensus 99 --~~~~i~f--v~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 99 --GVQNVEF--VVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred --CccceEE--EEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 322 333 3334444432 222 455555433322 245566654 46689997654 44322222333
Q ss_pred hHHHHHHHH-HHHH-HHHhhhccCCCCCHHHHHHHHHHHHHHHhhhhhcCCCCcccccccccHHHHHHcCCCcccc
Q 014896 278 LGRFVEAIH-YYSA-LFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHNWREKLQRSGFKGIS 351 (416)
Q Consensus 278 ~~RF~eaL~-yYsa-lFDsLda~~~~~~~eR~~~E~~~l~~eI~niVa~eG~~R~ere~~~~W~~rm~~aGF~~~~ 351 (416)
. ..++ ||.. ++=.+......+..+... |.+-|... +..+.-.+.|+.+||..+.
T Consensus 166 ~----~~~~~~~~~~v~P~~g~~~~~~~~~y~y-----L~eSi~~~-----------p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 166 R----KAYILYYFKYVLPLIGKLVAKDAEAYEY-----LAESIRRF-----------PDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred H----HHHHHHHHHhHhhhhceeeecChHHHHH-----HHHHHHhC-----------CCHHHHHHHHHhcCceEEe
Confidence 2 2222 4444 555555443333343333 33334322 2334556777889998665
No 65
>PRK14968 putative methyltransferase; Provisional
Probab=50.52 E-value=36 Score=30.32 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=32.1
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
+.-.|+|+|.+.|. +...|+.+ ..++|+++.+.+.++.+.+++.
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-----~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-----GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-----cceEEEEECCHHHHHHHHHHHH
Confidence 34469999999998 45556655 2479999998887777766553
No 66
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=49.96 E-value=44 Score=32.85 Aligned_cols=53 Identities=30% Similarity=0.327 Sum_probs=35.8
Q ss_pred eEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC--eEEE
Q 014896 148 VHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP--FEFC 211 (416)
Q Consensus 148 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp--FeF~ 211 (416)
.+|+|+|.|.|.--. +|+... |..++|+++.+...++.+.+++ +..|+. ++|.
T Consensus 116 ~~vLDlG~GsG~i~l----~la~~~---~~~~v~avDis~~al~~a~~n~----~~~~~~~~v~~~ 170 (284)
T TIGR00536 116 LHILDLGTGSGCIAL----ALAYEF---PNAEVIAVDISPDALAVAEENA----EKNQLEHRVEFI 170 (284)
T ss_pred CEEEEEeccHhHHHH----HHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCCCcEEEE
Confidence 589999999985333 344331 3468999999988887777653 445554 4444
No 67
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=48.45 E-value=94 Score=31.29 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecccc
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEK 216 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~ 216 (416)
.|++.+..-+.-+|+|+|.|.|.. ...++.+ |+- +++||+++...+.+.. ...+++. ...+.+|... .
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~GiD~S~~~l~q~~-a~~~~~~-~~~~i~~~~~--d 180 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVVGIDPSQLFLCQFE-AVRKLLG-NDQRAHLLPL--G 180 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEEEEcCCHHHHHHHH-HHHHhcC-CCCCeEEEeC--C
Confidence 344455422234799999998843 2344444 222 4999998876543211 1112221 1223445432 3
Q ss_pred ccccCccccccCCCceEEE-eeecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 217 VGNLDPERLNISKREAVAV-HWLQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 217 ~e~l~~~~l~~~~~EalaV-n~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
++++.. ...=+++.. ..++|. .+...+|.. -+.|+|...++.+
T Consensus 181 ~e~lp~----~~~FD~V~s~~vl~H~-----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 181 IEQLPA----LKAFDTVFSMGVLYHR-----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHHCCC----cCCcCEEEECChhhcc-----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 444422 011133333 345663 123345544 5778998665544
No 68
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=47.81 E-value=42 Score=34.81 Aligned_cols=59 Identities=14% Similarity=0.140 Sum_probs=41.3
Q ss_pred hHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 014896 135 NQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDF 200 (416)
Q Consensus 135 NqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~ 200 (416)
...+|+.+.....=+|+|+|.|.|. +--.|+.+. |..++|+|+.+...++.+.+++...
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 4556666654322389999999996 334555553 6789999999988888887776433
No 69
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=47.25 E-value=37 Score=33.20 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=42.1
Q ss_pred cCCccchhH-HHHhHHHHH----hhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 014896 123 ISPFVKFSH-FTANQAIQE----AFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRL 197 (416)
Q Consensus 123 ~~P~~kfa~-~taNqaILe----A~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL 197 (416)
..|=-+++. |..|+.|++ .+.-.+.-+|+|+|.|.|. +...|+.+ ++ ++|||+.+.+.++.+.+++
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~~---~v~avE~d~~~~~~~~~~~ 84 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--AA---KVTAVEIDRDLAPILAETF 84 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--CC---cEEEEECCHHHHHHHHHhh
Confidence 344444554 545555544 4433455689999999874 56666666 22 7999999887666665543
No 70
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=46.75 E-value=79 Score=28.42 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=35.2
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFC 211 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~ 211 (416)
.|+|+|.|.|. +...++.+ ++ ++++|+.+.+.++.+.+++. ..++..+|.
T Consensus 22 ~vLdlG~G~G~----~~~~l~~~--~~---~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~ 71 (179)
T TIGR00537 22 DVLEIGAGTGL----VAIRLKGK--GK---CILTTDINPFAVKELRENAK----LNNVGLDVV 71 (179)
T ss_pred eEEEeCCChhH----HHHHHHhc--CC---EEEEEECCHHHHHHHHHHHH----HcCCceEEE
Confidence 59999999884 45556654 23 89999999888888877764 334444443
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=46.28 E-value=1.1e+02 Score=28.05 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=32.8
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
+.-.|+|+|.|.|. ++-.|+.+. |...++||+.+.+.++.+.+++.
T Consensus 16 ~~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~~~~l~~a~~~~~ 61 (194)
T TIGR00091 16 KAPLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIHTPIVLAANNKAN 61 (194)
T ss_pred CCceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEeeHHHHHHHHHHHH
Confidence 34479999999875 444555442 55689999999888877766654
No 72
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=45.76 E-value=91 Score=29.27 Aligned_cols=106 Identities=20% Similarity=0.152 Sum_probs=59.8
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccc
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAE 215 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~ 215 (416)
..+++|++--+.-.++|+|.|.|.= + --||++ -+.+|+++.+...++. |.+.|+.-+++++....
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN--a--lyLA~~-----G~~VtAvD~s~~al~~----l~~~a~~~~l~i~~~~~-- 84 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN--A--LYLASQ-----GFDVTAVDISPVALEK----LQRLAEEEGLDIRTRVA-- 84 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH--H--HHHHHT-----T-EEEEEESSHHHHHH----HHHHHHHTT-TEEEEE---
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH--H--HHHHHC-----CCeEEEEECCHHHHHH----HHHHHhhcCceeEEEEe--
Confidence 4577777766667899999999842 1 135555 3789999999877655 67788889999665542
Q ss_pred cccccCccccccCCCceEEEe--eecccccccCCCchHHHHHH-HhcCCcEE
Q 014896 216 KVGNLDPERLNISKREAVAVH--WLQHSLYDVTGSDTNTLCLL-QRLAPKVV 264 (416)
Q Consensus 216 ~~e~l~~~~l~~~~~EalaVn--~l~h~l~~~~~~~~~~L~~i-r~L~P~vv 264 (416)
.+++.+.. ..-+ ++|. .++|+ . +...+.++..+ ..++|..+
T Consensus 85 Dl~~~~~~----~~yD-~I~st~v~~fL-~--~~~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 85 DLNDFDFP----EEYD-FIVSTVVFMFL-Q--RELRPQIIENMKAATKPGGY 128 (192)
T ss_dssp BGCCBS-T----TTEE-EEEEESSGGGS----GGGHHHHHHHHHHTEEEEEE
T ss_pred cchhcccc----CCcC-EEEEEEEeccC-C--HHHHHHHHHHHHhhcCCcEE
Confidence 23332221 1112 2332 23343 2 22345666655 55889754
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=45.34 E-value=58 Score=31.28 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred hHHHHhHHHHHhhhc--CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 130 SHFTANQAIQEAFER--EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 130 a~~taNqaILeA~~g--~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
+|..+.+..++++.. ...-.|+|+|.|.|. |.-+++.. |+. +++||+.+...++.+.+++.
T Consensus 101 g~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~----l~i~~~~~--g~~--~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 101 GTHPTTRLCLEALEKLVLPGKTVLDVGCGSGI----LAIAAAKL--GAK--KVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHH----HHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH
Confidence 455556667777763 345679999999884 33344433 333 59999999888888777643
No 74
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=44.24 E-value=54 Score=31.45 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=33.9
Q ss_pred cCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 144 REDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 144 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
..+..+|+|+|.|.|.= ...|+... |..++|+++.+...++.+.+++.
T Consensus 106 ~~~~~~vLDiG~GsG~~----~~~la~~~---~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAI----ALALAKER---PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred ccCCCEEEEEcCcHHHH----HHHHHHHC---CCCEEEEEECCHHHHHHHHHHHH
Confidence 44567899999998853 33333332 45789999999888877776655
No 75
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=44.13 E-value=79 Score=27.03 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=29.3
Q ss_pred cCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHH
Q 014896 144 REDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEA 192 (416)
Q Consensus 144 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~ 192 (416)
..+.-.|+|+|.+.| . +.+.|+.+ |. ++||++.+...++.
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECCHHHHhh
Confidence 456779999999999 3 45555544 22 99999999876655
No 76
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=43.44 E-value=53 Score=34.76 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccc
Q 014896 162 PGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPER 224 (416)
Q Consensus 162 p~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~ 224 (416)
|.||+.|..++..-|-=.|+-++.+.+.++.++....++++..|.+++|..-.++-+.|+-.+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gAD 76 (437)
T cd05298 14 PGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDAD 76 (437)
T ss_pred HHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCC
Confidence 588999999975555445566666778888899999999999999999888765555554444
No 77
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=43.30 E-value=41 Score=31.27 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=33.7
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
+.-.|+|+|.|.|.-...|.+ +. |.-++|||+.+.+.++.+.+++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s~~~i~~a~~~~~~ 86 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVHEPGVGKALKKIEE 86 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEechHHHHHHHHHHHH
Confidence 456799999999875544433 31 446899999998888777766543
No 78
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=43.21 E-value=58 Score=30.27 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
.+++.+.-+..-+|+|+|.|.|..=..|.+.+. +.-++++|+.+.+.++.+.+++.
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~------~~g~V~~iD~~~~~~~~a~~~l~ 118 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIE------RRGKVYTVEIVKELAIYAAQNIE 118 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcC------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 355666544556799999988875433433331 12379999999887877777664
No 79
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=42.84 E-value=37 Score=33.57 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=34.5
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCC
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGL 206 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgv 206 (416)
||+|+|.|.|..=..|.... |..+|+|++-+.+.++-+.++. +..|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~-------~~~~V~a~Dis~~Al~~A~~Na----~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-------PDAEVIAVDISPDALALARENA----ERNGL 159 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-------cCCeEEEEECCHHHHHHHHHHH----HHcCC
Confidence 99999999887544443332 4589999999999888877664 44554
No 80
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=42.80 E-value=59 Score=29.49 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
+++.+.-...-.|+|+|.|.|. +--.++.+. |..++|+|+.+.+.++.+.+++.+
T Consensus 23 ~~~~l~~~~~~~vLDiG~G~G~----~~~~la~~~---~~~~v~~vD~s~~~~~~a~~n~~~ 77 (187)
T PRK08287 23 ALSKLELHRAKHLIDVGAGTGS----VSIEAALQF---PSLQVTAIERNPDALRLIKENRQR 77 (187)
T ss_pred HHHhcCCCCCCEEEEECCcCCH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHHHH
Confidence 3444432334479999998873 333344331 457899999998877776655543
No 81
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=42.18 E-value=64 Score=31.81 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=40.8
Q ss_pred HHHHhHHHHHhhhc--CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 131 HFTANQAIQEAFER--EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 131 ~~taNqaILeA~~g--~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
+..+.+-.++.++. ...-.|+|+|.|.|. |..+++.. | . -++++|+.+...++.+.+++.
T Consensus 142 ~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 142 THPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECCHHHHHHHHHHHH
Confidence 55666767777652 344689999999884 33444443 2 2 389999999888888776643
No 82
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=42.08 E-value=40 Score=33.77 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=42.5
Q ss_pred HHHHhhhcC---CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC
Q 014896 137 AIQEAFERE---DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP 207 (416)
Q Consensus 137 aILeA~~g~---~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp 207 (416)
+++|++... +.-||.|.|.|.|.==.+|+..| |.-|+|+|+.+...+.-++++ |+++++.
T Consensus 136 ~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L-------~~~~v~AiD~S~~Ai~La~eN----~qr~~l~ 198 (328)
T KOG2904|consen 136 AVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL-------PQCTVTAIDVSKAAIKLAKEN----AQRLKLS 198 (328)
T ss_pred HHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC-------CCceEEEEeccHHHHHHHHHH----HHHHhhc
Confidence 455555542 45589999999997666666655 468999999998888777765 4444443
No 83
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=41.34 E-value=56 Score=32.25 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=35.3
Q ss_pred CCCCeEEEeecCCCH----HHHHHHHHHHHHHHHHcCCCeEEEe
Q 014896 173 GGPPYVRLTGLGTSM----EALEATGKRLSDFAEKLGLPFEFCP 212 (416)
Q Consensus 173 ggpP~LRITgI~~~~----~~l~~tg~rL~~~A~~lgvpFeF~~ 212 (416)
-|+|..|||..+++- +.|+++.+.+.+-++.+|...+|+.
T Consensus 218 VgaPrYri~v~a~dykkaee~l~~a~~~~~~~ikk~gg~~~~~r 261 (269)
T COG1093 218 VGAPRYRIDVQAPDYKKAEEVLEKAAEAAIKTIKKLGGEGTFIR 261 (269)
T ss_pred ecCCeEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 378999999998863 4699999999999999999999985
No 84
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=40.47 E-value=85 Score=29.81 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=36.5
Q ss_pred HhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHH
Q 014896 134 ANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKR 196 (416)
Q Consensus 134 aNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~r 196 (416)
.-+.+++.+.....-+|+|+|.|.|. +.+.|+.+ + -++|+++.+.+.++.+.++
T Consensus 30 ~a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s~~~l~~a~~~ 83 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECCHHHHHHHHhh
Confidence 44455666654444579999999983 55566654 2 4799999988777665544
No 85
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=40.25 E-value=68 Score=32.20 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=44.0
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
+.+++++.-...-.+||...|.|..=-.+++.+ ||..++.||+.+.+.++.+.++|.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~------~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERL------GPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356677654444479999999987766666554 4567899999999999999988855
No 86
>PHA03411 putative methyltransferase; Provisional
Probab=40.00 E-value=49 Score=32.98 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=45.8
Q ss_pred HHHHHccCCccchhHHHHhHHHHHhh--hcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHH
Q 014896 117 FQVFNGISPFVKFSHFTANQAIQEAF--EREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATG 194 (416)
Q Consensus 117 ~~~f~~~~P~~kfa~~taNqaILeA~--~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg 194 (416)
|.-|..-+ +...+.|++.+.|+..+ .....-+|+|+|.|.|. +...++.+.+ ..+||+|+.+...++.+.
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDisp~al~~Ar 105 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELNPEFARIGK 105 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECCHHHHHHHH
Confidence 44455555 56667788888887543 23334579999999883 3334444421 268999999887666554
Q ss_pred H
Q 014896 195 K 195 (416)
Q Consensus 195 ~ 195 (416)
+
T Consensus 106 ~ 106 (279)
T PHA03411 106 R 106 (279)
T ss_pred H
Confidence 4
No 87
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=38.56 E-value=38 Score=33.44 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.5
Q ss_pred hcCCeeEEeeccccCccccHHHHHHHhc
Q 014896 143 EREDRVHIIDLDIMQGLQWPGLFHILAS 170 (416)
Q Consensus 143 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~ 170 (416)
.|.+.+||||+|-+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 588999999998866677 556777776
No 88
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=37.99 E-value=1.1e+02 Score=31.29 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=53.2
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcccc
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l 225 (416)
...+|+|+|.+.|.-.. .++.+.+ ..++|+|+.+.+.++.+.++.. .-++.| +....+++...
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~---~~~VtgVD~S~~mL~~A~~k~~----~~~i~~----i~gD~e~lp~~-- 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVD---AKNVTILDQSPHQLAKAKQKEP----LKECKI----IEGDAEDLPFP-- 175 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCC---CCEEEEEECCHHHHHHHHHhhh----ccCCeE----EeccHHhCCCC--
Confidence 45689999999987433 3333321 1579999998877777665431 123332 33333333211
Q ss_pred ccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEEE
Q 014896 226 NISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVTV 266 (416)
Q Consensus 226 ~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvtl 266 (416)
-..=++++.+. ++|. . +....|.. .+.|+|.-.++
T Consensus 176 -~~sFDvVIs~~~L~~~-~----d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 176 -TDYADRYVSAGSIEYW-P----DPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred -CCceeEEEEcChhhhC-C----CHHHHHHHHHHhcCCCcEEE
Confidence 11224455544 4442 1 23455654 57799985543
No 89
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=37.81 E-value=70 Score=33.69 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcc
Q 014896 162 PGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPE 223 (416)
Q Consensus 162 p~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~ 223 (416)
|.||++|..++...|--.|+-++-+.+.++.++....+.++..|.+++|..-.+.=+.|+-.
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gA 75 (425)
T cd05197 14 PELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDA 75 (425)
T ss_pred HHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCC
Confidence 58899999998666655666677778888889999999999999999888765544444433
No 90
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=37.43 E-value=3.2e+02 Score=28.70 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=58.0
Q ss_pred CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcc
Q 014896 145 EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPE 223 (416)
Q Consensus 145 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~ 223 (416)
...-+|+|+|.|.|. +--.||.+. -+++||+.+.+.++.+.+++. ..|+. .+|.. .++.+.-..
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~----~~~~~~v~~~~--~d~~~~l~~ 360 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEAMVERARENAR----RNGLDNVTFYH--ANLEEDFTD 360 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHH----HcCCCceEEEE--eChHHhhhh
Confidence 344689999999885 333455542 379999999988888776543 34543 44432 222221100
Q ss_pred -ccccCCCceEEEeeecccccccCCCchHHHHHHHhcCCcEEEEecc
Q 014896 224 -RLNISKREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVEQ 269 (416)
Q Consensus 224 -~l~~~~~EalaVn~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlvE~ 269 (416)
.+.-..-+++++|=- ..+ ...++..+.+++|+-++.+.-
T Consensus 361 ~~~~~~~fD~Vi~dPP------r~g-~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 361 QPWALGGFDKVLLDPP------RAG-AAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred hhhhcCCCCEEEECcC------CcC-hHHHHHHHHhcCCCeEEEEEe
Confidence 010011244544411 112 235667788899998877664
No 91
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=37.37 E-value=1.2e+02 Score=27.88 Aligned_cols=97 Identities=21% Similarity=0.229 Sum_probs=52.3
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l 225 (416)
.-+|+|+|.|.|. .++ .|+.. .|..++|+|+.+...++.+.++ +++.|++ ++|. ..+++++..
T Consensus 43 ~~~vLDiGcGtG~--~s~--~la~~---~~~~~V~~iD~s~~~~~~a~~~----~~~~~~~~i~~i--~~d~~~~~~--- 106 (181)
T TIGR00138 43 GKKVIDIGSGAGF--PGI--PLAIA---RPELKLTLLESNHKKVAFLREV----KAELGLNNVEIV--NGRAEDFQH--- 106 (181)
T ss_pred CCeEEEecCCCCc--cHH--HHHHH---CCCCeEEEEeCcHHHHHHHHHH----HHHhCCCCeEEE--ecchhhccc---
Confidence 3489999999883 222 11212 1446799999988766655443 3445664 4443 334444321
Q ss_pred ccCCCceEEEeeecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 226 NISKREAVAVHWLQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 226 ~~~~~EalaVn~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
..+=+.++.|.+++ .+.++.. .+-|+|.-++++.
T Consensus 107 -~~~fD~I~s~~~~~--------~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 107 -EEQFDVITSRALAS--------LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -cCCccEEEehhhhC--------HHHHHHHHHHhcCCCCEEEEE
Confidence 11224555554221 1234444 3458898776655
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=36.40 E-value=67 Score=32.37 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHhHHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 133 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 133 taNqaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
...+.+||-+.....-+|+|||.|+|. |==.|+.+. |..+||-++-+...++-..+.|.
T Consensus 145 ~GS~lLl~~l~~~~~~~vlDlGCG~Gv----lg~~la~~~---p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 145 KGSRLLLETLPPDLGGKVLDLGCGYGV----LGLVLAKKS---PQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred hHHHHHHHhCCccCCCcEEEeCCCccH----HHHHHHHhC---CCCeEEEEecCHHHHHHHHHhHH
Confidence 356889999987766699999999884 222445443 68999999999888887776664
No 93
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=35.28 E-value=2.4e+02 Score=24.96 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=66.8
Q ss_pred eecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccccccCCCceEEEee-ecccccccCCCchHHHHH-HHh
Q 014896 181 TGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPERLNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQR 258 (416)
Q Consensus 181 TgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~ 258 (416)
|||+.+.+-|+.+.++...-+....-..+|.. ...+++... -..=+++..++ +||. .+...+|+. -|-
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~--~d~~~lp~~---~~~fD~v~~~~~l~~~-----~d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIE--GDAIDLPFD---DCEFDAVTMGYGLRNV-----VDRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEE--echhhCCCC---CCCeeEEEecchhhcC-----CCHHHHHHHHHHH
Confidence 68999988888776665432222112234432 233333211 01114454444 4443 234566655 477
Q ss_pred cCCcE-EEEeccCCCCCCChhHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhhhhcCCCCccccccccc
Q 014896 259 LAPKV-VTVVEQDLSPAGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGDVKFHN 337 (416)
Q Consensus 259 L~P~v-vtlvE~ea~~~~~F~~RF~eaL~yYsalFDsLda~~~~~~~eR~~~E~~~l~~eI~niVa~eG~~R~ere~~~~ 337 (416)
|+|.- +++.|-...+ + ...++... ||....-..-+.+.. .+...+ ++..-|.+.+. -+.
T Consensus 71 LkpGG~l~i~d~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~---~~~~y~--yl~~si~~f~~-----------~~e 130 (160)
T PLN02232 71 LKPGSRVSILDFNKSN-Q-SVTTFMQG--WMIDNVVVPVATVYD---LAKEYE--YLKYSINGYLT-----------GEE 130 (160)
T ss_pred cCcCeEEEEEECCCCC-h-HHHHHHHH--HHccchHhhhhHHhC---ChHHHH--hHHHHHHHCcC-----------HHH
Confidence 99984 4455554322 2 23333222 222111000011111 122332 34444544432 346
Q ss_pred HHHHHHcCCCccccCCh
Q 014896 338 WREKLQRSGFKGISLAG 354 (416)
Q Consensus 338 W~~rm~~aGF~~~~ls~ 354 (416)
....|+.+||..+....
T Consensus 131 l~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 131 LETLALEAGFSSACHYE 147 (160)
T ss_pred HHHHHHHcCCCcceEEE
Confidence 67889999998765433
No 94
>PLN03075 nicotianamine synthase; Provisional
Probab=35.14 E-value=2.5e+02 Score=28.29 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=60.2
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCC--CeEEEeccccccccCccccc
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGL--PFEFCPVAEKVGNLDPERLN 226 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgv--pFeF~~v~~~~e~l~~~~l~ 226 (416)
.|+|+|.|.|-=+.-++.+-. .|.-++|||+.+.+.++.+.+.+.+ ..|+ ..+|+... +-++...
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d~~ai~~Ar~~~~~---~~gL~~rV~F~~~D--a~~~~~~--- 192 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDIDPSANDVARRLVSS---DPDLSKRMFFHTAD--VMDVTES--- 192 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHhhh---ccCccCCcEEEECc--hhhcccc---
Confidence 489999998765655544322 2445999999998888776654432 2333 25555421 1111100
Q ss_pred cCCCceEEEeeecccccccCCCchHHHHHH-HhcCCcEEEEecc
Q 014896 227 ISKREAVAVHWLQHSLYDVTGSDTNTLCLL-QRLAPKVVTVVEQ 269 (416)
Q Consensus 227 ~~~~EalaVn~l~h~l~~~~~~~~~~L~~i-r~L~P~vvtlvE~ 269 (416)
..+=+.+.+..+++. ......++|..+ +.|+|.-++++..
T Consensus 193 l~~FDlVF~~ALi~~---dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 193 LKEYDVVFLAALVGM---DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcCEEEEeccccc---ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 123345555544442 123445666664 6699998888876
No 95
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=35.09 E-value=92 Score=31.63 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=34.6
Q ss_pred cCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 144 REDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 144 g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
..+.++|+|+|.|.|.=-+.| +.|. +..++||++-+...++.+.+.+.
T Consensus 112 ~~~~~~vLDIGtGag~I~~lL----a~~~---~~~~~~atDId~~Al~~A~~Nv~ 159 (321)
T PRK11727 112 RGANVRVLDIGVGANCIYPLI----GVHE---YGWRFVGSDIDPQALASAQAIIS 159 (321)
T ss_pred CCCCceEEEecCCccHHHHHH----HhhC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 446799999999987444333 4342 34689999999888888776654
No 96
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=34.56 E-value=81 Score=29.71 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=49.4
Q ss_pred hhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecc
Q 014896 141 AFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVA 214 (416)
Q Consensus 141 A~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~ 214 (416)
.+.+.+.|-+||=-|+.|.=-..+|++|-... |.=|++.+..-...-.+...+..++++++|+|.+|..+.
T Consensus 117 ~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~---p~~~yvvasL~d~~~~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 117 LLRNARTLVLVDDEISTGNTFLNLIRALHAKY---PRKRYVVASLLDWRSEEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred HhcCCCCEEEEecCccchHHHHHHHHHHHHhC---CCceEEEEEEeeCCCHHHHHHHHHHHHHcCCcEEEEEee
Confidence 34447799999999999999999999997663 233333322111112234566788899999999998764
No 97
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=34.43 E-value=3.2e+02 Score=25.06 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=52.9
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCC-CeEEEeccccccccCccc
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGL-PFEFCPVAEKVGNLDPER 224 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgv-pFeF~~v~~~~e~l~~~~ 224 (416)
+...|+|+|.+.|. +...++.. + .++|+++.+...++.+.+++.. .++ ++.|.. ...+++....
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~--~d~~~~~~~~ 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDASEENIEVAKLHAKK----DPLLKIEYRC--TSVEDLAEKG 109 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCCHHHHHHHHHHHHH----cCCCceEEEe--CCHHHhhcCC
Confidence 36689999998884 33344432 2 2499999988777766655442 344 344432 1222221111
Q ss_pred cccCCCceEEEee-ecccccccCCCchHHHHH-HHhcCCcEEEEe
Q 014896 225 LNISKREAVAVHW-LQHSLYDVTGSDTNTLCL-LQRLAPKVVTVV 267 (416)
Q Consensus 225 l~~~~~EalaVn~-l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlv 267 (416)
..+-++++.+. ++|. .....+|.. .+.|+|.-++++
T Consensus 110 --~~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 110 --AKSFDVVTCMEVLEHV-----PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred --CCCccEEEehhHHHhC-----CCHHHHHHHHHHhcCCCcEEEE
Confidence 12234554443 3332 233455555 467889865544
No 98
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=33.90 E-value=22 Score=36.59 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=10.2
Q ss_pred CCeeEEeecccc
Q 014896 145 EDRVHIIDLDIM 156 (416)
Q Consensus 145 ~~~VHIIDf~i~ 156 (416)
+..|||||||+.
T Consensus 165 ~n~IhiiDFGmA 176 (449)
T KOG1165|consen 165 ANVIHIIDFGMA 176 (449)
T ss_pred CceEEEEeccch
Confidence 468999999985
No 99
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=33.15 E-value=90 Score=29.97 Aligned_cols=53 Identities=23% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRL 197 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL 197 (416)
+.|++++...+.=.|+|+|.|.|. |...|+.+. + ++++|+.+.+.++.+.+++
T Consensus 19 ~~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 19 QKIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred HHHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECCHHHHHHHHHHh
Confidence 445555554555689999999886 666666663 2 3999998877666555443
No 100
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=32.37 E-value=77 Score=29.34 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=46.3
Q ss_pred cHHHHHHHHH-HHHhcCCHHHHHHHHHHhccccCCCCChhhhHHHHHHHHHHhhhhc
Q 014896 38 HLLTLLLQCA-EAVSADNLEEANKMLLEISQLSTPYGTSAQRVAAYFSEAMSARLVS 93 (416)
Q Consensus 38 ~L~~lL~~CA-~Av~~g~~~~A~~lL~~L~~~asp~Gd~~qRla~yF~eAL~~Rl~~ 93 (416)
-+...|+.|. -.+..++...|..++..|..+..|..+-..|+...|.+|+..=..|
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 3556777666 6677889999999999999998888788899999999999765544
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=31.95 E-value=92 Score=28.82 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHH
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDF 200 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~ 200 (416)
+++.+.-...-.|+|+|.|.|.... +|..+. + ++++|+.+.+.++.+.+++.++
T Consensus 70 l~~~l~~~~~~~VLeiG~GsG~~t~-~la~~~----~----~v~~vd~~~~~~~~a~~~~~~~ 123 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGSGYQAA-VLAHLV----R----RVFSVERIKTLQWEAKRRLKQL 123 (212)
T ss_pred HHHhcCCCCCCEEEEECCCccHHHH-HHHHHh----C----EEEEEeCCHHHHHHHHHHHHHC
Confidence 3455554556689999999887433 333332 1 6999998877777776666543
No 102
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=31.62 E-value=1.1e+02 Score=28.47 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
.+++++.-.+.-+|+|+|.|.|..=. .|+.+. ++.-++++|+.+.+.++.+.+++.+
T Consensus 68 ~~~~~l~~~~~~~VLDiG~GsG~~a~----~la~~~--~~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 68 MMTELLELKPGMKVLEIGTGSGYQAA----VLAEIV--GRDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred HHHHHhCCCCcCEEEEECCCccHHHH----HHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 45566654555689999998886332 334332 2345799999988877777766644
No 103
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=31.12 E-value=85 Score=29.44 Aligned_cols=51 Identities=31% Similarity=0.430 Sum_probs=34.4
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP 207 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp 207 (416)
+..+|+|+|.|.|. +...++.+. |..++|||+.+...++.+.+++ +..|++
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~~~~~a~~~~----~~~~~~ 137 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPEALAVARKNA----ARLGLD 137 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCC
Confidence 34689999999883 344444432 4568999999888777666554 345554
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=30.53 E-value=1.1e+02 Score=32.43 Aligned_cols=52 Identities=29% Similarity=0.289 Sum_probs=35.9
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFC 211 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~ 211 (416)
+|+|+|.|.|..=. .|+.+. |..++|+++.+.+.++.+.+++.+ .|+..+|.
T Consensus 254 rVLDLGcGSG~Iai----aLA~~~---p~a~VtAVDiS~~ALe~AreNa~~----~g~rV~fi 305 (423)
T PRK14966 254 RVWDLGTGSGAVAV----TVALER---PDAFVRASDISPPALETARKNAAD----LGARVEFA 305 (423)
T ss_pred EEEEEeChhhHHHH----HHHHhC---CCCEEEEEECCHHHHHHHHHHHHH----cCCcEEEE
Confidence 79999999886433 333321 456899999999888888777643 45554443
No 105
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=30.50 E-value=3e+02 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.046 Sum_probs=26.5
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHH
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEA 192 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~ 192 (416)
.-.|+|.|.|.|. =+..||.+ -..+|||+.+...++.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSELAVEQ 74 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCHHHHHH
Confidence 4588999998883 23345544 3579999999887775
No 106
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=30.15 E-value=95 Score=28.81 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=39.7
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGN 219 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~ 219 (416)
.|+|+|-|-| -|.+.=+++. |.+++|-|++...... -|...++.+|++ ..+.+..++|+
T Consensus 51 ~~lDiGSGaG--fPGipLaI~~-----p~~~~~LvEs~~KK~~----FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAG--FPGIPLAIAR-----PDLQVTLVESVGKKVA----FLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTT--TTHHHHHHH------TTSEEEEEESSHHHHH----HHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCC--ChhHHHHHhC-----CCCcEEEEeCCchHHH----HHHHHHHHhCCC-CEEEEEeeecc
Confidence 5999987655 4888777772 7889999998754332 366677888998 34444556666
No 107
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=30.08 E-value=3.2e+02 Score=25.72 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=26.2
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHH
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEA 192 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~ 192 (416)
.-.|+|.|.|.|. =...||.+ -..+|||+.+...++.
T Consensus 35 ~~rvLd~GCG~G~----da~~LA~~-----G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSL----DLAWLAEQ-----GHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchh----HHHHHHhC-----CCeEEEEeCCHHHHHH
Confidence 3489999999883 12234554 2579999999887764
No 108
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=30.08 E-value=96 Score=32.43 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=40.7
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
-+++.+.+...-.++|+|.|.|. .+-.+|.+. |...++||+.....++.+.++..
T Consensus 113 ~~~~~~~~~~~p~vLEIGcGsG~----~ll~lA~~~---P~~~~iGIEI~~~~i~~a~~ka~ 167 (390)
T PRK14121 113 NFLDFISKNQEKILIEIGFGSGR----HLLYQAKNN---PNKLFIGIEIHTPSIEQVLKQIE 167 (390)
T ss_pred HHHHHhcCCCCCeEEEEcCcccH----HHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHH
Confidence 35667777777789999999984 555666663 56789999998877777666543
No 109
>PRK03646 dadX alanine racemase; Reviewed
Probab=29.68 E-value=85 Score=32.08 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=32.4
Q ss_pred CeeEE-eeccccC-ccc---cHHHHHHHhcCCCCCCeEEEeecCCC---HHHHHHHHHHHHHHHH
Q 014896 146 DRVHI-IDLDIMQ-GLQ---WPGLFHILASRPGGPPYVRLTGLGTS---MEALEATGKRLSDFAE 202 (416)
Q Consensus 146 ~~VHI-IDf~i~~-G~Q---Wp~LiqaLa~R~ggpP~LRITgI~~~---~~~l~~tg~rL~~~A~ 202 (416)
-+||| ||-|++. |+. ++.+++.+.. .|.|+++||... .+....+.+.+.+|-+
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~sH~a~ad~~~~~~~Q~~~F~~ 177 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMSHFARADHPDGISEAMARIEQ 177 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcCCCCCCCCCHHHHHHHHHHH
Confidence 37899 9999874 764 5566666643 367999999642 1111225555555533
No 110
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=29.23 E-value=5.3e+02 Score=24.94 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=64.4
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCC-CeEEEeccccccccCcccccc
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGL-PFEFCPVAEKVGNLDPERLNI 227 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgv-pFeF~~v~~~~e~l~~~~l~~ 227 (416)
+|+|+|.|.|. +...+..++ +.-++|+|+.+.+.++.+.+.+......+.- .+++.. .+-.+-+.. . -
T Consensus 75 ~VL~iG~G~G~----~~~~ll~~~---~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~-~D~~~~l~~--~-~ 143 (270)
T TIGR00417 75 HVLVIGGGDGG----VLREVLKHK---SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQI-DDGFKFLAD--T-E 143 (270)
T ss_pred EEEEEcCCchH----HHHHHHhCC---CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEE-CchHHHHHh--C-C
Confidence 88999998876 344444442 3457999998887777777666554422211 123321 110110100 0 1
Q ss_pred CCCceEEEeeecccccccCCC--chHHHHH-HHhcCCcEEEEeccCCCCCCCh-hHHHHHHHHHHHHHHHhh
Q 014896 228 SKREAVAVHWLQHSLYDVTGS--DTNTLCL-LQRLAPKVVTVVEQDLSPAGSF-LGRFVEAIHYYSALFDSL 295 (416)
Q Consensus 228 ~~~EalaVn~l~h~l~~~~~~--~~~~L~~-ir~L~P~vvtlvE~ea~~~~~F-~~RF~eaL~yYsalFDsL 295 (416)
.+=++++++..... ..... ...++.. .+.|+|.-++++..+. +.+ ...|....+....+|...
T Consensus 144 ~~yDvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~---~~~~~~~~~~~~~tl~~~F~~v 210 (270)
T TIGR00417 144 NTFDVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES---PWIQLELITDLKRDVKEAFPIT 210 (270)
T ss_pred CCccEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC---cccCHHHHHHHHHHHHHHCCCe
Confidence 23356665532111 00011 2345554 4679999887765221 211 334444444444555544
No 111
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=28.81 E-value=81 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=18.8
Q ss_pred CCchHHHHHHHhcCCcEEEEeccC
Q 014896 247 GSDTNTLCLLQRLAPKVVTVVEQD 270 (416)
Q Consensus 247 ~~~~~~L~~ir~L~P~vvtlvE~e 270 (416)
++....+.+|+.++|+-+++|-.|
T Consensus 18 ad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 18 ADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp -BHHHHHHHHHHHCSSEEEEESSE
T ss_pred CCHHHHHHHHHhcCCCEEEEecCC
Confidence 456678899999999999887544
No 112
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.65 E-value=1.2e+02 Score=28.40 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
+++++.-.+.=+|+|+|.|.|..=. +|..+. .+.-++|+|+.+.+.++.+.+++.+
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG~~t~-~la~~~-----~~~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSGYHAA-VVAEIV-----GKSGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred HHHHcCCCCcCEEEEECCcccHHHH-HHHHhc-----CCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4444443444579999998887332 222221 1235899999998888887777654
No 113
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=28.02 E-value=28 Score=27.10 Aligned_cols=19 Identities=21% Similarity=0.635 Sum_probs=16.1
Q ss_pred ccccHHHHHHcCCCccccC
Q 014896 334 KFHNWREKLQRSGFKGISL 352 (416)
Q Consensus 334 ~~~~W~~rm~~aGF~~~~l 352 (416)
+..+-+++|+.+|++|+.+
T Consensus 4 RV~khR~~lRa~GLRPVqi 22 (65)
T PF11455_consen 4 RVRKHRERLRAAGLRPVQI 22 (65)
T ss_pred HHHHHHHHHHHcCCCccee
Confidence 4567799999999999876
No 114
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=27.89 E-value=5.4e+02 Score=26.68 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=55.6
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCcccc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~~~l 225 (416)
.=+|+|++.|.|.== -.||.+. -+++||+.+.+.++.+.+++. ..|+. .+|. ..+.+++-+ .+
T Consensus 293 ~~~vLDl~cG~G~~s----l~la~~~-----~~V~~vE~~~~av~~a~~n~~----~~~~~nv~~~--~~d~~~~l~-~~ 356 (431)
T TIGR00479 293 EELVVDAYCGVGTFT----LPLAKQA-----KSVVGIEVVPESVEKAQQNAE----LNGIANVEFL--AGTLETVLP-KQ 356 (431)
T ss_pred CCEEEEcCCCcCHHH----HHHHHhC-----CEEEEEEcCHHHHHHHHHHHH----HhCCCceEEE--eCCHHHHHH-HH
Confidence 347999999887422 2344331 279999999888888776654 33443 3443 222322111 11
Q ss_pred ccC--CCceEEEeeecccccccCCCchHHHHHHHhcCCcEEEEec
Q 014896 226 NIS--KREAVAVHWLQHSLYDVTGSDTNTLCLLQRLAPKVVTVVE 268 (416)
Q Consensus 226 ~~~--~~EalaVn~l~h~l~~~~~~~~~~L~~ir~L~P~vvtlvE 268 (416)
... .-++++++- ...+....++..+.+++|+-++.+.
T Consensus 357 ~~~~~~~D~vi~dP------Pr~G~~~~~l~~l~~l~~~~ivyvs 395 (431)
T TIGR00479 357 PWAGQIPDVLLLDP------PRKGCAAEVLRTIIELKPERIVYVS 395 (431)
T ss_pred HhcCCCCCEEEECc------CCCCCCHHHHHHHHhcCCCEEEEEc
Confidence 111 113343321 0123456788888899998776663
No 115
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=27.58 E-value=2.1e+02 Score=27.39 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=42.7
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC-eEEEeccccccccCc
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP-FEFCPVAEKVGNLDP 222 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp-FeF~~v~~~~e~l~~ 222 (416)
..|++|+|-|-|+ |++.=+++. |.+++|-|++..... .-|...++.+|++ .++.. .+.|++..
T Consensus 68 ~~~~~DIGSGaGf--PGipLAI~~-----p~~~vtLles~~Kk~----~FL~~~~~eL~L~nv~i~~--~RaE~~~~ 131 (215)
T COG0357 68 AKRVLDIGSGAGF--PGIPLAIAF-----PDLKVTLLESLGKKI----AFLREVKKELGLENVEIVH--GRAEEFGQ 131 (215)
T ss_pred CCEEEEeCCCCCC--chhhHHHhc-----cCCcEEEEccCchHH----HHHHHHHHHhCCCCeEEeh--hhHhhccc
Confidence 5799999886664 777777652 578899998764322 2356667788888 76654 45666653
No 116
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=27.57 E-value=1.7e+02 Score=28.81 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=35.1
Q ss_pred CeeEEeeccccCccccHHHHHHH------hcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHIL------ASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFC 211 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaL------a~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~ 211 (416)
+.|||||+.=. |+-|-.|+ +..+| +|--||.. ..+.+-+.++|++.|.++-.+
T Consensus 36 ngihIIDL~kT----~~~l~~A~~~v~~~~~~~g-----~ILfVgTK----~~a~~~V~~~A~r~g~~yV~~ 94 (252)
T COG0052 36 NGIHIIDLQKT----LERLREAYKFLRRIAANGG-----KILFVGTK----KQAQEPVKEFAERTGAYYVNG 94 (252)
T ss_pred CCcEEEEHHHH----HHHHHHHHHHHHHHHcCCC-----EEEEEech----HHHHHHHHHHHHHhCCceecC
Confidence 78999999743 55555544 33322 34445544 456778899999999988533
No 117
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=27.16 E-value=58 Score=31.97 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=18.3
Q ss_pred hcCCeeEEeeccccCccccHHHHHHHhcCC
Q 014896 143 EREDRVHIIDLDIMQGLQWPGLFHILASRP 172 (416)
Q Consensus 143 ~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ 172 (416)
.|.+.|||||+ +.+ +. .+|+.+.+..
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48899999999 444 55 5666666543
No 118
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=27.00 E-value=1.9e+02 Score=29.20 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=40.9
Q ss_pred HhcCCcEEEEeccCCCCC---CChhHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhh
Q 014896 257 QRLAPKVVTVVEQDLSPA---GSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRN 320 (416)
Q Consensus 257 r~L~P~vvtlvE~ea~~~---~~F~~RF~eaL~yYsalFDsLda~~~~~~~eR~~~E~~~l~~eI~n 320 (416)
+.++-|++|+--.|.++- ..|..+|..-+.-..++++.| | .+.|...|..+|.+-.-.
T Consensus 169 ~~~GSKaltvWvgDGsnfPGQ~nF~r~feRyl~sm~~iY~~l----P--aDw~lf~EhKmfEPAFYs 229 (430)
T COG4952 169 KALGSKALTVWVGDGSNFPGQSNFTRAFERYLDSMKAIYAAL----P--ADWRLFTEHKMFEPAFYS 229 (430)
T ss_pred HhhCcceEEEEeccCCCCCCchhHHHHHHHHHHHHHHHHHhC----c--hhhhHHHhhhcccchhhh
Confidence 889999999877776653 269988887666666666555 3 345888888877775443
No 119
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=26.66 E-value=1.3e+02 Score=22.06 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=32.6
Q ss_pred CeEEEeecC-CCHHHHHHHHHHHHH-HHHHcCCCeEEEeccccccccCcccc
Q 014896 176 PYVRLTGLG-TSMEALEATGKRLSD-FAEKLGLPFEFCPVAEKVGNLDPERL 225 (416)
Q Consensus 176 P~LRITgI~-~~~~~l~~tg~rL~~-~A~~lgvpFeF~~v~~~~e~l~~~~l 225 (416)
|.++|+... .+.+..++..+.+++ ..+.+|+|-+...|. +.+..++++
T Consensus 2 P~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~--i~e~~~~~w 51 (62)
T PRK00745 2 PTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDII--ITDVKRENW 51 (62)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEE--EEEcChHHe
Confidence 778888664 567778888888888 455589887655543 445555444
No 120
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=26.38 E-value=1.3e+02 Score=30.17 Aligned_cols=44 Identities=20% Similarity=0.192 Sum_probs=32.7
Q ss_pred eEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 148 VHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 148 VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
.+|+|+|.|.|. +.-.|+.+. |..++|+++.+...++.+.+++.
T Consensus 135 ~~VLDlG~GsG~----iai~la~~~---p~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 135 TRILDLCTGSGC----IAIACAYAF---PDAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CEEEEEechhhH----HHHHHHHHC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 589999999885 334455432 56889999999888887776643
No 121
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=26.01 E-value=1.9e+02 Score=27.15 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=40.0
Q ss_pred CeeEE-eeccc---cCccc---cHHHHHHHhcCCCCCCeEEEeecCC------CHHHHHHHHHHHHHHHHHc----CCCe
Q 014896 146 DRVHI-IDLDI---MQGLQ---WPGLFHILASRPGGPPYVRLTGLGT------SMEALEATGKRLSDFAEKL----GLPF 208 (416)
Q Consensus 146 ~~VHI-IDf~i---~~G~Q---Wp~LiqaLa~R~ggpP~LRITgI~~------~~~~l~~tg~rL~~~A~~l----gvpF 208 (416)
-.||| ||-|+ -.|+. ++.+++.+.. -|.|++.||.. +.+...+.-+.+.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36888 88885 35775 4455555543 35688888742 2244556666666666665 5777
Q ss_pred EEEec
Q 014896 209 EFCPV 213 (416)
Q Consensus 209 eF~~v 213 (416)
++..+
T Consensus 193 ~~is~ 197 (222)
T cd00635 193 KELSM 197 (222)
T ss_pred CEEEC
Confidence 76655
No 122
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=25.83 E-value=1.4e+02 Score=28.81 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=37.0
Q ss_pred HHHhHHHHHhhh----cCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHH
Q 014896 132 FTANQAIQEAFE----REDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLS 198 (416)
Q Consensus 132 ~taNqaILeA~~----g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~ 198 (416)
|..++.|++.+. -.+.=+|+|+|.|.|. |...|+.+. -++|+|+.+...++...+++.
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECCHHHHHHHHHHhc
Confidence 334444444433 2344579999999885 555566552 279999998877766665553
No 123
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=25.83 E-value=2.2e+02 Score=28.34 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHH
Q 014896 138 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSD 199 (416)
Q Consensus 138 ILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~ 199 (416)
|+++..-...=.|+|+|.|.|. |-..|+.+. -++++|+.+.+.++.+.+++..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD~~li~~l~~~~~~ 80 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEIDPRMVAELKKRFQN 80 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECCHHHHHHHHHHHHh
Confidence 3334433334479999998776 444454442 2699999998877776666543
No 124
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=25.76 E-value=1.8e+02 Score=27.71 Aligned_cols=110 Identities=25% Similarity=0.230 Sum_probs=63.2
Q ss_pred HHHH-hhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccc
Q 014896 137 AIQE-AFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAE 215 (416)
Q Consensus 137 aILe-A~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~ 215 (416)
++|. ++....-=+++|.|.+-| .|=+.||.|. =++|+++.+...++.+.+||..++ +| +|...
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G----~lT~~LA~rC-----d~LlavDis~~Al~~Ar~Rl~~~~---~V--~~~~~-- 96 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIG----VLTERLAPRC-----DRLLAVDISPRALARARERLAGLP---HV--EWIQA-- 96 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTS----HHHHHHGGGE-----EEEEEEES-HHHHHHHHHHTTT-S---SE--EEEES--
T ss_pred HHHHHhcCccccceeEecCCCcc----HHHHHHHHhh-----CceEEEeCCHHHHHHHHHhcCCCC---Ce--EEEEC--
Confidence 4555 577888888999998877 4778899884 589999999999999999998764 33 33321
Q ss_pred cccccCccccccCCCceEEEeeecccccccCCCchHHHH-HHHhcCCcEEEEe
Q 014896 216 KVGNLDPERLNISKREAVAVHWLQHSLYDVTGSDTNTLC-LLQRLAPKVVTVV 267 (416)
Q Consensus 216 ~~e~l~~~~l~~~~~EalaVn~l~h~l~~~~~~~~~~L~-~ir~L~P~vvtlv 267 (416)
.+.+..|. ..=+.+++.=+.+-+.+ ......++. ++..|.|.-..|.
T Consensus 97 dvp~~~P~----~~FDLIV~SEVlYYL~~-~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 97 DVPEFWPE----GRFDLIVLSEVLYYLDD-AEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp -TTT---S----S-EEEEEEES-GGGSSS-HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cCCCCCCC----CCeeEEEEehHhHcCCC-HHHHHHHHHHHHHHhCCCCEEEE
Confidence 11111111 11134444434333321 112234443 4678999876655
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=25.71 E-value=97 Score=30.25 Aligned_cols=46 Identities=9% Similarity=-0.097 Sum_probs=31.0
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHH
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKR 196 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~r 196 (416)
...|+|+|.|.|. |.-+++.+-..++..+||+|+.+...++.+.++
T Consensus 50 ~grVLDlG~GSG~----Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n 95 (241)
T PHA03412 50 SGSVVDLCAGIGG----LSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI 95 (241)
T ss_pred CCEEEEccChHHH----HHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh
Confidence 4689999998773 333444432223457999999988877666644
No 126
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.62 E-value=54 Score=33.52 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=19.1
Q ss_pred HHHHHhhhcCCeeEEeeccccC--ccccHH
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQ--GLQWPG 163 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~--G~QWp~ 163 (416)
+.+++. |.+||=|||||+.+ |.|+.-
T Consensus 146 ~~l~~~--~~~RVaIiD~DvHHGnGTqeif 173 (340)
T COG0123 146 KYLLKK--GVKRVAIIDFDVHHGNGTQEIF 173 (340)
T ss_pred HHHHHc--CCCcEEEEEecCCCChhhHHHH
Confidence 344444 78999999999976 578743
No 127
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=25.21 E-value=1.3e+02 Score=28.10 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=53.8
Q ss_pred CCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCccc
Q 014896 145 EDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNLDPER 224 (416)
Q Consensus 145 ~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l~~~~ 224 (416)
....+|+|+|.+.|.- ...++.+ + .++|+|+.+...++.+.+++. ..++..+|... ...++...
T Consensus 47 ~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s~~~~~~a~~~~~----~~~~~~~~~~~--~~~~~~~~- 110 (233)
T PRK05134 47 LFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDASEENIEVARLHAL----ESGLKIDYRQT--TAEELAAE- 110 (233)
T ss_pred CCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCCHHHHHHHHHHHH----HcCCceEEEec--CHHHhhhh-
Confidence 3566899999988752 3344443 2 369999998877776665543 23445555432 22222100
Q ss_pred cccCCCceEEEe-eecccccccCCCchHHHHH-HHhcCCcEEEEec
Q 014896 225 LNISKREAVAVH-WLQHSLYDVTGSDTNTLCL-LQRLAPKVVTVVE 268 (416)
Q Consensus 225 l~~~~~EalaVn-~l~h~l~~~~~~~~~~L~~-ir~L~P~vvtlvE 268 (416)
.-..-+.++.+ .++|. .....+|.. .+.|+|.-.+++.
T Consensus 111 -~~~~fD~Ii~~~~l~~~-----~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 111 -HPGQFDVVTCMEMLEHV-----PDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -cCCCccEEEEhhHhhcc-----CCHHHHHHHHHHHcCCCcEEEEE
Confidence 00122344332 23332 233455544 4678898554443
No 128
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=24.35 E-value=1.1e+02 Score=28.52 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=54.8
Q ss_pred CeeEEeecccc---CccccHHHHHHHhcCCCCCCeEEE------eecCCCHHHHHHHHHHHHHHHHHcCCCeEEEecccc
Q 014896 146 DRVHIIDLDIM---QGLQWPGLFHILASRPGGPPYVRL------TGLGTSMEALEATGKRLSDFAEKLGLPFEFCPVAEK 216 (416)
Q Consensus 146 ~~VHIIDf~i~---~G~QWp~LiqaLa~R~ggpP~LRI------TgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~ 216 (416)
.+|+||.|=-+ -+..=.++|.+|+.+ .|.+ |||+.+ +....++.-+..|+++.+..|-|.++...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~d-d~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINAD-DAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECc-cchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 48999998532 345667899999655 2556 788744 34677888999999999988876665322
Q ss_pred ccccCccccccCC-Cce-EEEee
Q 014896 217 VGNLDPERLNISK-REA-VAVHW 237 (416)
Q Consensus 217 ~e~l~~~~l~~~~-~Ea-laVn~ 237 (416)
-+......+++.. .++ ++|+-
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk 155 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDK 155 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECC
Confidence 1222223444433 355 56653
No 129
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=24.20 E-value=1.8e+02 Score=30.60 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCCCeEEEeecCCC-HHHHHHHHHHHHHHHHHcCCCeEEEecccccccc
Q 014896 162 PGLFHILASRPGGPPYVRLTGLGTS-MEALEATGKRLSDFAEKLGLPFEFCPVAEKVGNL 220 (416)
Q Consensus 162 p~LiqaLa~R~ggpP~LRITgI~~~-~~~l~~tg~rL~~~A~~lgvpFeF~~v~~~~e~l 220 (416)
|.||++|+.+....+-=.|+-++-+ .+.|+.++....+..+..|.+++|..-.+.-+.+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al 73 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREAL 73 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHh
Confidence 5889999997554443344444445 8889999999999999999998888655433334
No 130
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=23.89 E-value=1.4e+02 Score=29.36 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=36.0
Q ss_pred CeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCC
Q 014896 146 DRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLP 207 (416)
Q Consensus 146 ~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvp 207 (416)
...+|+|+|.|.|. +.-.|+.+. |..++|||+.+...++.+.+++ +..|++
T Consensus 121 ~~~~vLDlG~GsG~----i~~~la~~~---~~~~v~avDis~~al~~A~~n~----~~~~~~ 171 (284)
T TIGR03533 121 PVKRILDLCTGSGC----IAIACAYAF---PEAEVDAVDISPDALAVAEINI----ERHGLE 171 (284)
T ss_pred CCCEEEEEeCchhH----HHHHHHHHC---CCCEEEEEECCHHHHHHHHHHH----HHcCCC
Confidence 34589999999885 444555442 4578999999988888877664 444553
No 131
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=23.58 E-value=1.2e+02 Score=31.75 Aligned_cols=74 Identities=23% Similarity=0.415 Sum_probs=52.6
Q ss_pred EEeecccc--------Cc----cccHHHHHHHhcCCCCCC-eEEEeecCCC-----------HHHHHHHHHHHHHHHHHc
Q 014896 149 HIIDLDIM--------QG----LQWPGLFHILASRPGGPP-YVRLTGLGTS-----------MEALEATGKRLSDFAEKL 204 (416)
Q Consensus 149 HIIDf~i~--------~G----~QWp~LiqaLa~R~ggpP-~LRITgI~~~-----------~~~l~~tg~rL~~~A~~l 204 (416)
-.|.||+. || .-.-.|+.+|+..|.-.+ .--+|+|..- .+..+++.+.|.+||.++
T Consensus 333 FtVEFGLCkq~g~~KayGAGLLSS~gEL~hals~~pei~~FdP~vt~vq~y~it~yQp~YfvaeSFedAk~KlR~fa~ti 412 (461)
T KOG3820|consen 333 FTVEFGLCKQDGELKAYGAGLLSSYGELQHALSDKPEIKDFDPEVTAVQKYLITTYQPLYFVAESFEDAKEKLRKFASTI 412 (461)
T ss_pred EEEEEeeeccCCeeeeechhhhhhHHHHHHHhcCCccccCCCccceeeeeccccccccceeehhhHHHHHHHHHHHHHhC
Confidence 46899974 34 235567888887765433 2346777531 467999999999999999
Q ss_pred CCCeE--EEeccccccccCc
Q 014896 205 GLPFE--FCPVAEKVGNLDP 222 (416)
Q Consensus 205 gvpFe--F~~v~~~~e~l~~ 222 (416)
.=||. |++-..++|-|+.
T Consensus 413 ~RPF~VrynpyT~svEvLds 432 (461)
T KOG3820|consen 413 KRPFSVRYNPYTQSVEVLDS 432 (461)
T ss_pred CCCceeeeccccceehhhcC
Confidence 99985 6677667766643
No 132
>PRK00811 spermidine synthase; Provisional
Probab=23.52 E-value=5.1e+02 Score=25.42 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=32.4
Q ss_pred EEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHH
Q 014896 149 HIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAE 202 (416)
Q Consensus 149 HIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~ 202 (416)
+|+|+|.|.|. +...+.++ ++.-+||+|+.+...++.+.+.+.++..
T Consensus 79 ~VL~iG~G~G~----~~~~~l~~---~~~~~V~~VEid~~vv~~a~~~~~~~~~ 125 (283)
T PRK00811 79 RVLIIGGGDGG----TLREVLKH---PSVEKITLVEIDERVVEVCRKYLPEIAG 125 (283)
T ss_pred EEEEEecCchH----HHHHHHcC---CCCCEEEEEeCCHHHHHHHHHHhHHhcc
Confidence 67888888764 34444444 2345899999998888877777665543
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=23.15 E-value=2.2e+02 Score=26.92 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=41.7
Q ss_pred HHHHhhhcCCeeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHH
Q 014896 137 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEK 203 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~ 203 (416)
.++++++=+..-.|.|+|-|.|.+ ..+|-.|..+ .-++++|+...+-.+.+.++|.+.-..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~-aAlla~lvg~-----~g~Vv~vE~~~~l~~~A~~~l~~~~~~ 123 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQ-AALLAHLVGP-----VGRVVSVERDPELAERARRNLARLGID 123 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHH-HHHHHHHHST-----TEEEEEEESBHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhcCCCCEEEEecCCCcHH-HHHHHHhcCc-----cceEEEECccHHHHHHHHHHHHHhccC
Confidence 466777655566789999988887 4566666643 238999998888788888887765433
No 134
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=22.71 E-value=3.4e+02 Score=28.97 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred HHHHHhhhcCCeeEEeeccccCccccH--HHHHHHhcCC-CC-CCeEEE----eecCCCH--HHHHHHHHHHHHHHHHcC
Q 014896 136 QAIQEAFEREDRVHIIDLDIMQGLQWP--GLFHILASRP-GG-PPYVRL----TGLGTSM--EALEATGKRLSDFAEKLG 205 (416)
Q Consensus 136 qaILeA~~g~~~VHIIDf~i~~G~QWp--~LiqaLa~R~-gg-pP~LRI----TgI~~~~--~~l~~tg~rL~~~A~~lg 205 (416)
.+|-+.....++-+||=|+.|--..=. -..++|...| .+ .|.+.+ |++..|. +.++.+-+++.++|++.|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 456666666667778888765321111 1123554332 12 345666 5565553 467888889999999999
Q ss_pred CCeEEEecc
Q 014896 206 LPFEFCPVA 214 (416)
Q Consensus 206 vpFeF~~v~ 214 (416)
+|+..+.+.
T Consensus 83 lpi~~~~v~ 91 (447)
T TIGR03183 83 LPIEPHRLT 91 (447)
T ss_pred CCeEEEecC
Confidence 999988663
No 135
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=21.48 E-value=1.8e+02 Score=28.65 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=32.4
Q ss_pred CCCeEEEeecCCCH----HHHHHHHHHHHHHHHHcCCCeEEEe
Q 014896 174 GPPYVRLTGLGTSM----EALEATGKRLSDFAEKLGLPFEFCP 212 (416)
Q Consensus 174 gpP~LRITgI~~~~----~~l~~tg~rL~~~A~~lgvpFeF~~ 212 (416)
|||..|||...++. ..|+++-..+.+..+..|-.|.|+-
T Consensus 217 g~P~Y~i~~~~~d~k~~~~~l~~~~~~~~~~i~~~gg~~~~~r 259 (262)
T PRK03987 217 GAPRYRIDVTAPDYKTAEKALKKIAERAIKVIKKLGGEGSFVR 259 (262)
T ss_pred CCCeEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEEE
Confidence 68888888777763 4689999999999999999999874
No 136
>PRK14967 putative methyltransferase; Provisional
Probab=20.77 E-value=2.3e+02 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=32.9
Q ss_pred eeEEeeccccCccccHHHHHHHhcCCCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEE
Q 014896 147 RVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEF 210 (416)
Q Consensus 147 ~VHIIDf~i~~G~QWp~LiqaLa~R~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF 210 (416)
.-+|+|+|.|.|.- ...++.. +. -++|+|+.+...++.+.+++. ..|+..++
T Consensus 37 ~~~vLDlGcG~G~~----~~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~----~~~~~~~~ 88 (223)
T PRK14967 37 GRRVLDLCTGSGAL----AVAAAAA--GA--GSVTAVDISRRAVRSARLNAL----LAGVDVDV 88 (223)
T ss_pred CCeEEEecCCHHHH----HHHHHHc--CC--CeEEEEECCHHHHHHHHHHHH----HhCCeeEE
Confidence 35899999998862 2233433 11 389999998877776665543 34554443
No 137
>cd06100 CCL_ACL-C Citryl-CoA lyase (CCL), the C-terminal portion of the single-subunit type ATP-citrate lyase (ACL) and the C-terminal portion of the large subunit of the two-subunit type ACL. CCL cleaves citryl-CoA (CiCoA) to acetyl-CoA (AcCoA) and oxaloacetate (OAA). ACL catalyzes an ATP- and a CoA- dependant cleavage of citrate to form AcCoA and OAA in a multistep reaction, the final step of which is likely to involve the cleavage of CiCoA to generate AcCoA and OAA. In fungi, yeast, plants, and animals ACL is cytosolic and generates AcCoA for lipogenesis. ACL may be required for fruiting body maturation in the filamentous fungus Sordaria macrospore. In several groups of autotrophic prokaryotes and archaea, ACL carries out the citrate-cleavage reaction of the reductive tricarboxylic acid (rTCA) cycle. In the family Aquificaceae this latter reaction in the rTCA cycle is carried out via a two enzyme system the second enzyme of which is CCL; the first enzyme is citryl-CoA synthetase (CC
Probab=20.50 E-value=3.8e+02 Score=25.48 Aligned_cols=89 Identities=10% Similarity=0.127 Sum_probs=38.8
Q ss_pred HHHHHHHHHhccccCCCCChhhhHHHHHHHHHH--hhhhcCCccccccCCCCCcccHHHHHHHHHHHHccCCccchhHHH
Q 014896 56 EEANKMLLEISQLSTPYGTSAQRVAAYFSEAMS--ARLVSSCLGIYAALPSLPQTHTQKMVSAFQVFNGISPFVKFSHFT 133 (416)
Q Consensus 56 ~~A~~lL~~L~~~asp~Gd~~qRla~yF~eAL~--~Rl~~~~~~~y~~~~~~~~~~~~~~~~a~~~f~~~~P~~kfa~~t 133 (416)
+.+..+|.++. ++.++..+-+..+..+.+. .|+-|-++.+|+.. .+-..-+....+.+....|++++++-.
T Consensus 85 e~~~~~l~~~~---~~~~~~~~~~~~~v~~~~~~~~~ipGfGH~v~~~~----DPRa~~L~~~~~~~~~~~~~~~~~~~~ 157 (227)
T cd06100 85 EGAARLFKEAV---DSGDALDAAAAEFVAEYRAAKKRIPGFGHPVHKNP----DPRVPRLLELARELGPAGPHLDYALAV 157 (227)
T ss_pred HHHHHHHHHHH---hcccchHHHHHHHHHHHHHcCCCCCCCCCCCCCCC----CchHHHHHHHHHHhccCCHHHHHHHHH
Confidence 34444444444 2222223333444444444 35666666666421 111222333334444445677666544
Q ss_pred HhHHHHHhhhcCCeeEE-eecc
Q 014896 134 ANQAIQEAFEREDRVHI-IDLD 154 (416)
Q Consensus 134 aNqaILeA~~g~~~VHI-IDf~ 154 (416)
..++.+..+ +.+++ |||=
T Consensus 158 --~~~~~~~~~-~~l~~Nvd~~ 176 (227)
T cd06100 158 --EKALTAAKG-KPLPLNVDGA 176 (227)
T ss_pred --HHHHHhccC-CCCcccHHHH
Confidence 233444322 34554 5543
No 138
>PTZ00063 histone deacetylase; Provisional
Probab=20.49 E-value=79 Score=33.54 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=19.6
Q ss_pred HHHHhhhcCCeeEEeeccccC--ccccH
Q 014896 137 AIQEAFEREDRVHIIDLDIMQ--GLQWP 162 (416)
Q Consensus 137 aILeA~~g~~~VHIIDf~i~~--G~QWp 162 (416)
||+++.+..++|=|||||+.+ |.|+.
T Consensus 156 Ai~~L~~~~~RVliID~DvHHGdGtqe~ 183 (436)
T PTZ00063 156 GILELLKYHARVMYIDIDVHHGDGVEEA 183 (436)
T ss_pred HHHHHHHhCCeEEEEeCCCCCCcchHHH
Confidence 455666666899999999976 47763
No 139
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=20.10 E-value=2.1e+02 Score=31.78 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=41.9
Q ss_pred cccCc-cccHHHHHHHhcC---CCCCCeEEEeecCCCHHHHHHHHHHHHHHHHHcCCCeEEEe-cc
Q 014896 154 DIMQG-LQWPGLFHILASR---PGGPPYVRLTGLGTSMEALEATGKRLSDFAEKLGLPFEFCP-VA 214 (416)
Q Consensus 154 ~i~~G-~QWp~LiqaLa~R---~ggpP~LRITgI~~~~~~l~~tg~rL~~~A~~lgvpFeF~~-v~ 214 (416)
|+..| -||-+|.++|..+ .++.|.+.|+..+...+.. |-+-|.++|+.-|++-+|+. +.
T Consensus 354 g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~eED~--T~~YL~d~a~qAG~~t~~~~~ie 417 (619)
T PRK10507 354 YKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDIEENY--HAQFMQQALHQAGFETKILRGLD 417 (619)
T ss_pred CCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCCCcHH--HHHHHHHHHHHCCCceEEecCHH
Confidence 44444 6777777777532 3444789999887665544 66779999999999999883 54
Done!