BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014898
         (416 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 323

 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 6/308 (1%)

Query: 112 IGELISTAFPIWVSLGCLLGLVKPSSFNWVQPK--WXXXXXXXXXXXXXXXXXXDDLRGA 169
           I   I   F +W +L        P +F W  P   W                  D L   
Sbjct: 7   ISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDIL--- 63

Query: 170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG 229
              PK +I G + Q+++MP + +L+SKLLNLP+  A G+ILVGCCPGGTASN++TY+ARG
Sbjct: 64  FKHPKVVIIGVIAQFAIMPATAWLLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARG 123

Query: 230 NVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289
           NVALSV +T+ STL + ++TP +   LAG+ + + A G+ MS +++VLLP++ G  +++ 
Sbjct: 124 NVALSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKV 183

Query: 290 FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL 349
             S  + ++  +P ++V  + ++ G  +  S   I+ SG  +     L +  G+  G+  
Sbjct: 184 LGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFA 243

Query: 350 ARMLGIDVASCRTISIEVGMQNS-VLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAG 408
           A+  G+   + +T++IEVGMQNS +   + A+    +P+ AVP A+ SV H+I GS+LA 
Sbjct: 244 AKWTGLPYDAQKTLTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLAT 303

Query: 409 IWRRSTPK 416
            W     K
Sbjct: 304 YWAAKAGK 311


>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile
           Acid Sodium Symporter Asbt
          Length = 332

 Score =  164 bits (415), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 171/308 (55%), Gaps = 6/308 (1%)

Query: 112 IGELISTAFPIWVSLGCLLGLVKPSSFNWVQPK--WXXXXXXXXXXXXXXXXXXDDLRGA 169
           I   I   F +W +L        P +F W  P   W                  D L   
Sbjct: 12  ISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDIL--- 68

Query: 170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG 229
              PK +I G + Q+++MP + + +SKLLNLP+  A G+ILVGCCPGGTASN++TY+ARG
Sbjct: 69  FKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARG 128

Query: 230 NVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289
           NVALSV +T+ STL++ ++TP +   LAG+ + + A G+ MS +++VLLP++ G  +++ 
Sbjct: 129 NVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKV 188

Query: 290 FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL 349
             S  + ++  +P ++V  + ++ G  +  S   I+ SG  +     L +  G+  G+  
Sbjct: 189 LGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFA 248

Query: 350 ARMLGIDVASCRTISIEVGMQNS-VLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAG 408
           A+  G+   + + ++IEVGMQNS +   + A+    +P+ AVP A+ SV H+I GS+LA 
Sbjct: 249 AKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLAT 308

Query: 409 IWRRSTPK 416
            W     K
Sbjct: 309 YWAAKAGK 316


>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
          Length = 413

 Score = 33.1 bits (74), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 187 MPISGFLVSKLLNL-PSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSA 245
           +P + F V+KLL L PS    G+   GC  GGT   +   +A  N    VL+  + T + 
Sbjct: 160 LPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAV 219

Query: 246 VVMTPFLT--AKLAGQYVAVDA 265
               P  T    L GQ +  D 
Sbjct: 220 TFRGPSETHLDSLVGQALFGDG 241


>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
          Length = 397

 Score = 33.1 bits (74), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 187 MPISGFLVSKLLNL-PSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSA 245
           +P + F V+KLL L PS    G+   GC  GGT   +   +A  N    VL+  + T + 
Sbjct: 144 LPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAV 203

Query: 246 VVMTPFLT--AKLAGQYVAVDA 265
               P  T    L GQ +  D 
Sbjct: 204 TFRGPSETHLDSLVGQALFGDG 225


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,307,998
Number of Sequences: 62578
Number of extensions: 352822
Number of successful extensions: 936
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 5
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)