Query 014898
Match_columns 416
No_of_seqs 212 out of 1534
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 4.5E-53 9.8E-58 413.1 37.9 304 110-414 5-308 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 4.6E-44 9.9E-49 357.3 34.2 290 112-401 4-319 (328)
3 TIGR00841 bass bile acid trans 100.0 1.8E-43 3.9E-48 347.2 33.2 271 140-414 5-279 (286)
4 PF13593 DUF4137: SBF-like CPA 100.0 1.1E-38 2.5E-43 316.5 33.7 295 118-412 1-313 (313)
5 COG0798 ACR3 Arsenite efflux p 100.0 1.1E-30 2.4E-35 255.0 35.0 306 108-413 8-332 (342)
6 KOG2718 Na+-bile acid cotransp 100.0 1.7E-30 3.7E-35 259.4 9.2 276 121-397 89-367 (371)
7 PF01758 SBF: Sodium Bile acid 100.0 8.1E-29 1.8E-33 228.9 19.1 178 148-325 2-185 (187)
8 TIGR00946 2a69 he Auxin Efflux 99.5 2.1E-12 4.4E-17 129.0 17.0 124 130-256 197-320 (321)
9 PRK09903 putative transporter 99.4 7.1E-12 1.5E-16 124.9 16.5 124 129-256 187-310 (314)
10 COG0679 Predicted permeases [G 99.3 1.5E-10 3.2E-15 115.4 17.1 141 115-257 164-308 (311)
11 PF03547 Mem_trans: Membrane t 99.0 1.2E-08 2.5E-13 104.0 18.0 135 118-253 243-385 (385)
12 KOG4821 Predicted Na+-dependen 98.9 9.9E-10 2.1E-14 101.5 4.9 176 118-293 23-220 (287)
13 PRK12460 2-keto-3-deoxyglucona 98.6 2E-06 4.3E-11 84.9 15.6 223 125-364 20-254 (312)
14 KOG2718 Na+-bile acid cotransp 98.4 2.6E-07 5.7E-12 93.3 4.5 250 150-407 50-311 (371)
15 PF03812 KdgT: 2-keto-3-deoxyg 98.1 0.00086 1.9E-08 66.3 21.9 270 125-413 20-312 (314)
16 TIGR00793 kdgT 2-keto-3-deoxyg 97.8 0.00074 1.6E-08 66.4 15.3 271 125-413 20-312 (314)
17 COG3180 AbrB Putative ammonia 97.6 0.044 9.5E-07 55.4 24.3 102 153-258 67-169 (352)
18 PF05145 AmoA: Putative ammoni 97.6 0.12 2.5E-06 52.0 29.4 208 149-360 30-265 (318)
19 PRK03562 glutathione-regulated 97.3 0.2 4.4E-06 54.8 27.0 98 144-245 58-160 (621)
20 PRK03659 glutathione-regulated 97.2 0.38 8.2E-06 52.5 27.9 80 144-227 58-139 (601)
21 PRK05274 2-keto-3-deoxyglucona 97.1 0.06 1.3E-06 54.3 19.8 230 125-372 22-268 (326)
22 COG0475 KefB Kef-type K+ trans 97.0 0.52 1.1E-05 48.8 28.1 155 125-283 38-203 (397)
23 PF03601 Cons_hypoth698: Conse 96.7 0.61 1.3E-05 46.6 22.7 134 119-256 28-169 (305)
24 PRK10669 putative cation:proto 96.6 1.4 3E-05 47.6 26.6 75 125-202 38-114 (558)
25 TIGR00844 c_cpa1 na(+)/h(+) an 96.3 1.6 3.5E-05 48.9 24.6 54 119-172 40-101 (810)
26 TIGR03082 Gneg_AbrB_dup membra 96.1 0.54 1.2E-05 42.2 16.7 105 147-255 50-155 (156)
27 PRK05326 potassium/proton anti 96.1 2.7 5.8E-05 45.4 30.7 50 123-172 36-89 (562)
28 PF03547 Mem_trans: Membrane t 96.1 0.15 3.3E-06 51.8 14.5 108 274-385 7-120 (385)
29 TIGR00946 2a69 he Auxin Efflux 96.1 1.8 3.9E-05 43.1 23.5 268 116-389 7-298 (321)
30 PRK09903 putative transporter 95.8 2.4 5.2E-05 42.2 27.7 267 115-388 5-287 (314)
31 TIGR00932 2a37 transporter, mo 95.7 2.1 4.6E-05 41.4 22.3 165 124-295 23-196 (273)
32 COG0679 Predicted permeases [G 95.5 3.1 6.8E-05 41.5 27.1 266 118-389 8-285 (311)
33 PLN03159 cation/H(+) antiporte 95.3 6.9 0.00015 44.5 27.2 109 142-255 104-224 (832)
34 PF04172 LrgB: LrgB-like famil 94.0 2.7 5.9E-05 39.9 15.2 89 166-256 70-158 (215)
35 COG2855 Predicted membrane pro 93.9 7.8 0.00017 39.2 18.9 133 120-256 40-178 (334)
36 TIGR03136 malonate_biotin Na+- 93.6 8 0.00017 39.5 18.3 101 151-257 109-211 (399)
37 PF03977 OAD_beta: Na+-transpo 93.6 9 0.0002 38.7 20.2 101 151-257 73-174 (360)
38 PRK10711 hypothetical protein; 93.3 1.3 2.9E-05 42.4 11.8 84 171-256 86-169 (231)
39 PF05145 AmoA: Putative ammoni 93.2 2.4 5.1E-05 42.6 14.2 107 147-257 207-314 (318)
40 PF03601 Cons_hypoth698: Conse 93.1 0.55 1.2E-05 46.9 9.4 105 275-382 28-137 (305)
41 PRK04288 antiholin-like protei 93.0 1.5 3.3E-05 42.0 11.8 81 171-256 91-174 (232)
42 TIGR00659 conserved hypothetic 92.9 1.6 3.5E-05 41.7 11.8 85 170-256 84-168 (226)
43 KOG2722 Predicted membrane pro 92.9 0.14 3E-06 51.9 4.8 112 143-255 284-402 (408)
44 TIGR00698 conserved hypothetic 91.5 17 0.00038 36.8 20.8 133 121-257 35-176 (335)
45 COG1346 LrgB Putative effector 91.2 3.3 7.1E-05 39.6 11.5 95 316-414 78-175 (230)
46 PRK12460 2-keto-3-deoxyglucona 91.0 3.6 7.8E-05 41.2 12.1 126 125-256 174-303 (312)
47 TIGR00831 a_cpa1 Na+/H+ antipo 90.2 30 0.00065 37.2 25.6 46 124-171 29-77 (525)
48 COG4651 RosB Kef-type K+ trans 90.1 22 0.00048 35.7 22.3 127 126-257 39-176 (408)
49 PRK03562 glutathione-regulated 89.4 8.4 0.00018 42.3 14.6 103 146-255 270-378 (621)
50 PRK15477 oxaloacetate decarbox 89.4 28 0.0006 35.8 16.8 103 151-257 138-245 (433)
51 PRK15476 oxaloacetate decarbox 89.3 28 0.0006 35.8 16.8 103 151-257 138-245 (433)
52 PRK15475 oxaloacetate decarbox 89.2 29 0.00063 35.7 16.8 103 151-257 138-245 (433)
53 PF03956 DUF340: Membrane prot 89.0 3.2 6.9E-05 38.7 9.4 132 277-412 2-136 (191)
54 COG3180 AbrB Putative ammonia 88.4 25 0.00054 35.9 15.9 109 145-257 238-347 (352)
55 COG1346 LrgB Putative effector 87.7 8.6 0.00019 36.8 11.5 87 165-256 82-171 (230)
56 PF05684 DUF819: Protein of un 87.4 38 0.00083 34.9 29.2 110 140-255 55-167 (378)
57 PF04172 LrgB: LrgB-like famil 87.1 10 0.00022 36.1 11.7 95 316-414 65-162 (215)
58 TIGR01109 Na_pump_decarbB sodi 86.9 36 0.00078 34.4 15.7 101 151-257 67-174 (354)
59 PRK03659 glutathione-regulated 86.2 25 0.00055 38.4 15.9 104 146-255 267-375 (601)
60 PRK10711 hypothetical protein; 85.2 17 0.00036 35.0 12.2 95 316-414 76-173 (231)
61 PRK04288 antiholin-like protei 85.2 14 0.00031 35.4 11.7 95 316-414 81-178 (232)
62 PF06826 Asp-Al_Ex: Predicted 84.9 9.8 0.00021 34.8 10.1 77 304-382 58-136 (169)
63 TIGR00659 conserved hypothetic 84.4 22 0.00047 34.1 12.5 95 316-414 75-172 (226)
64 TIGR00698 conserved hypothetic 81.3 8.4 0.00018 39.1 9.0 60 320-379 80-140 (335)
65 COG2855 Predicted membrane pro 79.4 8.5 0.00018 38.9 8.1 49 319-367 83-131 (334)
66 PRK10669 putative cation:proto 78.7 75 0.0016 34.2 15.8 104 147-256 279-387 (558)
67 TIGR00840 b_cpa1 sodium/hydrog 77.4 1.1E+02 0.0025 33.2 22.3 113 121-235 39-164 (559)
68 PRK05274 2-keto-3-deoxyglucona 77.3 6 0.00013 40.0 6.4 51 149-202 204-254 (326)
69 PLN03159 cation/H(+) antiporte 73.8 70 0.0015 36.6 14.4 124 129-256 301-436 (832)
70 PF00999 Na_H_Exchanger: Sodiu 72.2 0.31 6.8E-06 49.4 -4.3 122 143-269 49-179 (380)
71 PRK04972 putative transporter; 71.3 24 0.00053 38.3 9.7 86 322-409 466-556 (558)
72 PRK04972 putative transporter; 69.4 1.6E+02 0.0035 32.0 15.4 77 146-223 62-139 (558)
73 PRK03818 putative transporter; 67.4 30 0.00066 37.5 9.4 100 277-378 34-140 (552)
74 PF05982 DUF897: Domain of unk 65.4 1.6E+02 0.0035 29.8 22.2 176 183-364 63-271 (327)
75 TIGR03802 Asp_Ala_antiprt aspa 65.3 2.1E+02 0.0045 31.2 15.3 102 148-253 452-559 (562)
76 TIGR03802 Asp_Ala_antiprt aspa 65.0 1.1E+02 0.0024 33.2 13.2 77 145-222 59-136 (562)
77 TIGR00793 kdgT 2-keto-3-deoxyg 64.6 50 0.0011 33.1 9.4 20 148-167 201-220 (314)
78 PF03812 KdgT: 2-keto-3-deoxyg 63.6 39 0.00085 33.9 8.5 14 275-288 299-312 (314)
79 PF06826 Asp-Al_Ex: Predicted 58.8 1.4E+02 0.0031 27.1 15.1 103 125-232 31-143 (169)
80 PRK15086 ethanolamine utilizat 56.4 2.4E+02 0.0053 29.0 18.9 32 262-293 163-194 (372)
81 COG1883 OadB Na+-transporting 56.3 58 0.0013 32.5 8.1 100 152-257 89-189 (375)
82 PRK02830 Na(+)-translocating N 53.3 2E+02 0.0044 27.1 13.1 80 231-310 39-126 (202)
83 PRK03818 putative transporter; 52.2 3.4E+02 0.0075 29.4 16.1 78 145-223 62-140 (552)
84 PF03956 DUF340: Membrane prot 51.1 2.1E+02 0.0045 26.6 17.1 127 123-256 4-138 (191)
85 PRK01061 Na(+)-translocating N 49.9 2.5E+02 0.0055 27.2 12.9 78 232-309 47-134 (244)
86 COG0475 KefB Kef-type K+ trans 47.4 3.4E+02 0.0074 28.0 14.3 97 129-229 251-354 (397)
87 TIGR00832 acr3 arsenical-resis 45.8 2.1E+02 0.0045 28.9 10.6 64 179-242 251-314 (328)
88 TIGR01625 YidE_YbjL_dupl AspT/ 42.5 88 0.0019 28.1 6.6 77 304-382 58-137 (154)
89 TIGR01943 rnfA electron transp 41.1 3E+02 0.0066 25.6 13.0 95 210-310 21-115 (190)
90 TIGR03082 Gneg_AbrB_dup membra 41.0 47 0.001 29.6 4.7 31 331-361 79-109 (156)
91 PRK09796 PTS system cellobiose 40.6 3.4E+02 0.0073 29.0 11.6 33 184-216 158-191 (472)
92 PF05684 DUF819: Protein of un 40.4 4.3E+02 0.0094 27.2 14.7 113 121-240 242-356 (378)
93 PRK12456 Na(+)-translocating N 39.0 3.4E+02 0.0073 25.6 13.1 78 231-308 40-121 (199)
94 TIGR00841 bass bile acid trans 38.3 3.9E+02 0.0085 26.1 14.9 78 177-257 69-153 (286)
95 TIGR01940 nqrE NADH:ubiquinone 38.2 3.5E+02 0.0075 25.5 12.8 80 231-310 38-125 (200)
96 COG0385 Predicted Na+-dependen 37.3 4.4E+02 0.0095 26.7 11.2 55 176-230 225-279 (319)
97 PRK09292 Na(+)-translocating N 36.8 3.8E+02 0.0081 25.5 13.0 30 281-310 85-114 (209)
98 PRK09824 PTS system beta-gluco 35.8 4.5E+02 0.0097 29.2 12.0 32 184-215 154-186 (627)
99 PRK05151 electron transport co 34.6 3.9E+02 0.0084 25.0 13.4 94 210-309 22-115 (193)
100 TIGR00844 c_cpa1 na(+)/h(+) an 32.1 5.3E+02 0.011 29.6 11.8 81 147-227 298-381 (810)
101 PF01943 Polysacc_synt: Polysa 31.5 4.1E+02 0.0088 24.3 12.6 62 230-293 4-67 (273)
102 PRK01030 tetrahydromethanopter 31.1 1.2E+02 0.0026 29.6 5.8 42 334-377 167-208 (264)
103 COG0025 NhaP NhaP-type Na+/H+ 29.7 6.7E+02 0.014 26.2 22.9 144 145-292 62-214 (429)
104 TIGR01625 YidE_YbjL_dupl AspT/ 29.2 4.2E+02 0.0091 23.7 12.0 67 145-212 55-124 (154)
105 KOG1307 K+-dependent Ca2+/Na+ 29.1 74 0.0016 33.8 4.3 126 161-290 411-554 (588)
106 COG0786 GltS Na+/glutamate sym 28.6 7E+02 0.015 26.1 17.3 100 154-256 76-184 (404)
107 TIGR00783 ccs citrate carrier 28.4 6.6E+02 0.014 25.7 12.5 109 304-412 27-146 (347)
108 PF03253 UT: Urea transporter; 28.4 1.4E+02 0.003 29.8 6.1 72 338-413 39-112 (301)
109 PF05982 DUF897: Domain of unk 28.3 6.5E+02 0.014 25.6 12.7 130 100-238 162-302 (327)
110 PF11120 DUF2636: Protein of u 27.9 1.6E+02 0.0034 22.5 4.8 33 267-299 5-37 (62)
111 PRK05326 potassium/proton anti 26.3 5.7E+02 0.012 27.6 10.9 109 144-256 274-390 (562)
112 TIGR00210 gltS sodium--glutama 26.1 7.6E+02 0.016 25.7 26.5 106 147-255 67-182 (398)
113 COG1970 MscL Large-conductance 25.8 2.3E+02 0.005 24.8 6.1 85 110-198 5-94 (130)
114 KOG2722 Predicted membrane pro 25.7 81 0.0018 32.5 3.8 72 335-406 82-162 (408)
115 PF03616 Glt_symporter: Sodium 25.3 7.5E+02 0.016 25.3 24.3 140 150-292 70-242 (368)
116 PF01688 Herpes_gI: Alphaherpe 22.7 1.2E+02 0.0025 27.6 3.9 53 6-61 101-153 (161)
117 PF04346 EutH: Ethanolamine ut 21.7 8.9E+02 0.019 24.9 16.8 95 195-293 70-193 (354)
118 PF02508 Rnf-Nqr: Rnf-Nqr subu 21.2 6.6E+02 0.014 23.3 13.8 29 280-308 84-112 (190)
119 COG4413 Utp Urea transporter [ 20.5 8.4E+02 0.018 24.1 9.6 201 189-402 52-269 (319)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=4.5e-53 Score=413.13 Aligned_cols=304 Identities=39% Similarity=0.651 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898 110 ELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI 189 (416)
Q Consensus 110 ~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl 189 (416)
+.++++..+.+|+++++...++...|+.+.++..+ .+..+.++||.+|++++.+|+++..+|||.+++++.+||++||+
T Consensus 5 ~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl 83 (319)
T COG0385 5 RFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSA-IPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL 83 (319)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHH-HHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 44445667888999999999999999999998874 46789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHH
Q 014898 190 SGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLF 269 (416)
Q Consensus 190 la~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~ 269 (416)
+++++++++++||+.+.|+++++|||+|+.||+||+++|||+++|++++.+||+++++++|+++.++.|+.+++|.++++
T Consensus 84 la~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~ 163 (319)
T COG0385 84 LALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMF 163 (319)
T ss_pred HHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 014898 270 MSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVL 349 (416)
Q Consensus 270 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~ll 349 (416)
+++++.+++|+.+|+++|++.|+++++.++.+++++...++++++..++.+.+.+.+.+..+.+++++++.++|.+||+.
T Consensus 164 ~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ 243 (319)
T COG0385 164 LSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFG 243 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888777778888999999999999999
Q ss_pred HHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014898 350 ARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 350 arll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l~q~i~~s~la~~~~r~~ 414 (416)
+|++|+|++|++|+++|+|+||.++|+.+|..+|+||..++|.++|+++|++.+++++.+|+||+
T Consensus 244 ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~ 308 (319)
T COG0385 244 ARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI 308 (319)
T ss_pred HHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999776699999999999999999999999999874
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=100.00 E-value=4.6e-44 Score=357.26 Aligned_cols=290 Identities=20% Similarity=0.262 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCccchhhhHH----H---HHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHH
Q 014898 112 IGELISTAFPIWVSLGCLLGLVKPSSFNWVQPK----W---TIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQY 184 (416)
Q Consensus 112 i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~----l---~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~ 184 (416)
+.|+...++.+.++++.+.|+..|..+.+.... . ..+.+.++||++|++++.+|+++.+||||.+..+++.||
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qf 83 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINW 83 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHH
Confidence 445666777777788889999999998777532 1 223566899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Q 014898 185 SVMPISGFLVSKLL-NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAG----- 258 (416)
Q Consensus 185 vl~Plla~~l~~~~-~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g----- 258 (416)
+++|+++|++++++ +.+|+++.|+++++|||||.+|++||+++|||+++|+.+|+++|+++++++|+++.++.|
T Consensus 84 vi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~ 163 (328)
T TIGR00832 84 IIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIW 163 (328)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999985 999999999999999999999999999999999999999999999999999999988865
Q ss_pred ---ceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH-HHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhch
Q 014898 259 ---QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHS-----LVK-FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGP 329 (416)
Q Consensus 259 ---~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~-----~~~-~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~ 329 (416)
+.+++|.++++.+++.++++|+++|+++|++.++ +.+ +..+.++.++.+.+.+++....+.+++.+.+.++
T Consensus 164 ~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~ 243 (328)
T TIGR00832 164 LGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPL 243 (328)
T ss_pred cccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 4578999999999999999999999999999995 333 6777788888877777777778888888877654
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCc-chHHHHHHHHHHHHH
Q 014898 330 QV---ALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSP-MAAVPCAVSSVCHSI 401 (416)
Q Consensus 330 ~i---ll~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p-~~alP~~v~~l~q~i 401 (416)
.+ ..+.++++.++|.+||+++|.+|++++|++|+++|+|+||.++|+.+|.++|+++ ..+.+.+...++|..
T Consensus 244 ~i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e~~ 319 (328)
T TIGR00832 244 DIALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIEVP 319 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhehh
Confidence 44 3467789999999999999999999999999999999999999999999999864 455555545555544
No 3
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=100.00 E-value=1.8e-43 Score=347.18 Aligned_cols=271 Identities=38% Similarity=0.637 Sum_probs=251.5
Q ss_pred hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhH
Q 014898 140 WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTA 219 (416)
Q Consensus 140 ~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~ 219 (416)
++.+...+. ++++||++|++++.+|+++.++|||.+..+++.|++++|+++|++++.++++++++.|+++++|||++.+
T Consensus 5 ~~~~~~~~~-l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~ 83 (286)
T TIGR00841 5 NLSTILLIL-LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTA 83 (286)
T ss_pred hHHHHHHHH-HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchH
Confidence 344455555 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCcee----eechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014898 220 SNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYV----AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVK 295 (416)
Q Consensus 220 s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v----~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~ 295 (416)
+++||+++|||.++++.+++++|+++++++|+++.++.+..+ ++|.++++.+ +..+++|+.+|+++|++.|++.+
T Consensus 84 s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~ 162 (286)
T TIGR00841 84 SNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAK 162 (286)
T ss_pred HHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999998865544 4999999999 89999999999999999999988
Q ss_pred HHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHH
Q 014898 296 FVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLG 375 (416)
Q Consensus 296 ~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~La 375 (416)
+.++ ++.++.+.+.+++...++.+.+.+.+..+.+.+++.+++.++|.+||+.+|.+|++++|++|+++|+|+||+++|
T Consensus 163 ~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~la 241 (286)
T TIGR00841 163 IILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRTISIEVGMQNSQLC 241 (286)
T ss_pred HHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhheeeeeeeecccHHHH
Confidence 8888 899998887777777778888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014898 376 VVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 376 i~La~~~f~~p~~alP~~v~~l~q~i~~s~la~~~~r~~ 414 (416)
++++.++|+ |..++|.++|.++|++.+.+++.+|+|+.
T Consensus 242 l~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~ 279 (286)
T TIGR00841 242 STIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH 279 (286)
T ss_pred HHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 89999999999999999999999998763
No 4
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=100.00 E-value=1.1e-38 Score=316.54 Aligned_cols=295 Identities=24% Similarity=0.360 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHhhhcCccchh---hh-HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 014898 118 TAFPIWVSLGCLLGLVKPSSFNW---VQ-PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFL 193 (416)
Q Consensus 118 ~~~pl~i~~~~l~gl~~P~~~~~---~~-~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~ 193 (416)
+||++.+..++++|+..|+.... .. ++.....+++++|..|++++.+|+++..+|||.++.++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999988753 32 245667799999999999999999999999999999999999999999999
Q ss_pred HHHhcC--CChhHHHHHhHhccCchhhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CceeeechHHHH
Q 014898 194 VSKLLN--LPSHYAAGLILVGCCPGGTASNI-VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA-GQYVAVDAMGLF 269 (416)
Q Consensus 194 l~~~~~--l~~~~~~glvl~~~~P~~~~s~i-~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~-g~~v~i~~~~l~ 269 (416)
+.++++ .+++.+.|+++++|+|++..|++ ||+++|||.++++..++++|+++++++|+++.++. ++.+++|..+++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~ 160 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVL 160 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHH
Confidence 999984 78999999999999999988875 89999999999999999999999999999999987 778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhh--HHHHhhhc----hHHHHHHHHHHHHHH
Q 014898 270 MSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQS--ASAILTSG----PQVALAAFLLHASGF 343 (416)
Q Consensus 270 ~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~--~~~i~~~~----~~ill~~~ll~~~gf 343 (416)
.++...+++|+++|+++|++.+++.++.++.++.++...++.+++..++.. ++...+.. ..+...++.++...+
T Consensus 161 ~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 161 IKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888888777654 22222222 223456778888999
Q ss_pred HHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCC----cchHHHHHHHHHHHHHHHHHHHHHHhh
Q 014898 344 FFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGS----PMAAVPCAVSSVCHSIFGSVLAGIWRR 412 (416)
Q Consensus 344 ~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~----p~~alP~~v~~l~q~i~~s~la~~~~r 412 (416)
.++|+.+|.+|++++|++|+.|++++||.++|++++...|++ +.+.+|+++||..|++++++++.+|+|
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r 313 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR 313 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999974 378999999999999999999999987
No 5
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-30 Score=254.97 Aligned_cols=306 Identities=20% Similarity=0.281 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhhh-------HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHH
Q 014898 108 WIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQ-------PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGF 180 (416)
Q Consensus 108 ~~~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~-------~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l 180 (416)
..+.+.|++..|..+++.+|+.+|..+|+..+.+. +....+.+.+||+.+-++++.+++++..+++|.+.+.+
T Consensus 8 ~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL 87 (342)
T COG0798 8 KLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSL 87 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHH
Confidence 34555567777878888889999999999443222 23355688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-CCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 014898 181 VLQYSVMPISGFLVSKLL-NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ 259 (416)
Q Consensus 181 ~~~~vl~Plla~~l~~~~-~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~ 259 (416)
..|+++-|+++|++++.| +..|++.+|+++.+.+||..++.+|+++++||.++++..+.++.++++++.|.+.+++.|.
T Consensus 88 ~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v 167 (342)
T COG0798 88 FVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGV 167 (342)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988 6778999999999999999999999999999999999999999999999999999888765
Q ss_pred e-eeechHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHH
Q 014898 260 Y-VAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSL------VKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVA 332 (416)
Q Consensus 260 ~-v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~------~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~il 332 (416)
. +++++++++++++..+.+|+.+|++.|++..++ .++..|.+++++...+.+.+...++.+.+.+.+.++.++
T Consensus 168 ~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~ 247 (342)
T COG0798 168 ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDIL 247 (342)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHH
Confidence 4 889999999999999999999999999986553 357888889999988888888888889999998887665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHH
Q 014898 333 LAA---FLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFG-SPMAAVPCAVSSVCHSIFGSVLAG 408 (416)
Q Consensus 333 l~~---~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~-~p~~alP~~v~~l~q~i~~s~la~ 408 (416)
..+ .+....-+.++|+++|.+|.+.+|+.+++|+++.+|..+|+++|.+.|+ +..+++..++..+.|.+.--.++.
T Consensus 248 liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpvml~lV~ 327 (342)
T COG0798 248 LIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPVMLGLVK 327 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHHHHHHHH
Confidence 443 3444577889999999999999999999999999999999999999998 566777788899999888777766
Q ss_pred HHhhc
Q 014898 409 IWRRS 413 (416)
Q Consensus 409 ~~~r~ 413 (416)
.++|.
T Consensus 328 v~~~~ 332 (342)
T COG0798 328 VALRI 332 (342)
T ss_pred HHHHH
Confidence 55543
No 6
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-30 Score=259.41 Aligned_cols=276 Identities=40% Similarity=0.607 Sum_probs=242.2
Q ss_pred HHHHHHHHHHhhhcC-ccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014898 121 PIWVSLGCLLGLVKP-SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLN 199 (416)
Q Consensus 121 pl~i~~~~l~gl~~P-~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~ 199 (416)
|+......+.....| ..+.|+.+......+...|+++|++++.+++++..+||+.+.+|++.|+++||+.+|.+++.+.
T Consensus 89 p~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~ 168 (371)
T KOG2718|consen 89 PLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLL 168 (371)
T ss_pred hHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhh
Confidence 444444455555666 7788888776677889999999999999999999999999999999999999999999999998
Q ss_pred CChhHHHHHhHhccCchhhHHHHH-HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHHHHHHH
Q 014898 200 LPSHYAAGLILVGCCPGGTASNIV-TYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLL 278 (416)
Q Consensus 200 l~~~~~~glvl~~~~P~~~~s~i~-t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll~~vll 278 (416)
+|..+++|.+++.|++++..++.. +..-+||+.+++.+|.++|+.+++++|++-.++.++.+..|...+..+.+..+.+
T Consensus 169 lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~ 248 (371)
T KOG2718|consen 169 LPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGL 248 (371)
T ss_pred CCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHH
Confidence 988887777777766666655555 5555999999999999999999999999999998888899998888899999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-HHhCCCc
Q 014898 279 PVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLA-RMLGIDV 357 (416)
Q Consensus 279 Pl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~lla-rll~~~~ 357 (416)
|+++|.++|+++|+..+.+.+.+++++.+..+++++.....+.+.+...+++++..+..+++.||..||+.+ +.... .
T Consensus 249 pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~~~~~i~~~~~~l~l~g~l~~Y~~~~~~~~~-~ 327 (371)
T KOG2718|consen 249 PLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLFFGYQILLLGAALPLAGFLAGYLLSFSPLDD-V 327 (371)
T ss_pred HHHHHHHhcccCccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch-h
Confidence 999999999999999999999999999999999998888888888888889999999999999999999996 43333 6
Q ss_pred cceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHH
Q 014898 358 ASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSV 397 (416)
Q Consensus 358 ~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l 397 (416)
+++||+++|+||||..+++.+++..++||.++.|++...+
T Consensus 328 a~~~tisie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s~v 367 (371)
T KOG2718|consen 328 ATARTISIETGMQNSLLALALATKHLQDPLVVVPPATSSV 367 (371)
T ss_pred hhhcchHHHhccchhHHHHHHhhcccCCceeeeccchhhh
Confidence 6899999999999999999999999999988887766544
No 7
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.96 E-value=8.1e-29 Score=228.91 Aligned_cols=178 Identities=39% Similarity=0.627 Sum_probs=154.9
Q ss_pred HHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898 148 IGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS-KLLNLPSHYAAGLILVGCCPGGTASNIVTYI 226 (416)
Q Consensus 148 ~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~-~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~ 226 (416)
+.++++||++|++++.+|+++..||||.+..++++|++++|+++|+++ ..++.+++++.|+++++|||||..+++||++
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l 81 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYL 81 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999 8889999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeec---hHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhCcC
Q 014898 227 ARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVD---AMGLFMSTLQVVLLPVLGGAFLNQYFH--SLVKFVSPLM 301 (416)
Q Consensus 227 ~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~---~~~l~~~ll~~vllPl~lG~llr~~~p--~~~~~i~~~l 301 (416)
+|||.++++.++.++++++++++|+++.++.+...+.| +++++.+++..+++|+++|+++|++.| +..+++++..
T Consensus 82 ~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~~~~~~ 161 (187)
T PF01758_consen 82 AGGDVALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARRLKPFL 161 (187)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HHHHCCH
T ss_pred hCCCcccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999988777777 899999999999999999999999999 8888999999
Q ss_pred chHHHHHHHHHHHHHHHhhHHHHh
Q 014898 302 PPIAVGTVAILCGNAIAQSASAIL 325 (416)
Q Consensus 302 ~~is~i~ll~ii~~~i~~~~~~i~ 325 (416)
+.++.+.+++++...++.+.+.+.
T Consensus 162 ~~~s~~~l~~~i~~~~~~~~~~i~ 185 (187)
T PF01758_consen 162 KPLSFILLLLIIVLIFASNASVIA 185 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHTH----
T ss_pred hHHHHHHHHHHHHHHHHHhccccc
Confidence 999998888887777887776654
No 8
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.45 E-value=2.1e-12 Score=128.99 Aligned_cols=124 Identities=18% Similarity=0.264 Sum_probs=114.0
Q ss_pred HhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh
Q 014898 130 LGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLI 209 (416)
Q Consensus 130 ~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glv 209 (416)
.|+.+|+......+.+...+.|++|+.+|+.++.++.+ ++++........+++++|++++++...++++++.....+
T Consensus 197 ~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~v 273 (321)
T TIGR00946 197 VGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAI 273 (321)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 36778999988888999999999999999999887765 344667778888999999999999999999999999999
Q ss_pred HhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 210 LVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 210 l~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
+++++|++.++++++.++|+|.+.+...+.+||++|++++|+|+.++
T Consensus 274 l~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 274 LQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999875
No 9
>PRK09903 putative transporter YfdV; Provisional
Probab=99.40 E-value=7.1e-12 Score=124.89 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=111.6
Q ss_pred HHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q 014898 129 LLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGL 208 (416)
Q Consensus 129 l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~gl 208 (416)
..|+..|+..++..+++...+.|+.|+.+|+++...+++ .+ +......+.|+++.|++++++...+++++.....+
T Consensus 187 l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~ 262 (314)
T PRK09903 187 LVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMM 262 (314)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 347789999999999999999999999999999877653 22 34456777899999999999999899999999999
Q ss_pred hHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 209 ILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 209 vl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
++.+++|++.++++++.++|+|.+++...+.+||++|.+++|+|++++
T Consensus 263 vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 263 VLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875
No 10
>COG0679 Predicted permeases [General function prediction only]
Probab=99.27 E-value=1.5e-10 Score=115.45 Aligned_cols=141 Identities=24% Similarity=0.355 Sum_probs=118.8
Q ss_pred HHHHHHHHHH-HHHHHH---hhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHH
Q 014898 115 LISTAFPIWV-SLGCLL---GLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPIS 190 (416)
Q Consensus 115 ~l~~~~pl~i-~~~~l~---gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pll 190 (416)
.+.++.|++- ++|.++ |+..|+......+.+...+.|+.|+++|++++.+..++. +++........+++++|++
T Consensus 164 ~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~--~~~~~~~~~~~kll~~Pl~ 241 (311)
T COG0679 164 KLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGS--KPPIILIALSLKLLLAPLV 241 (311)
T ss_pred HHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccc--cchhHHHHHHHHHHHHHHH
Confidence 3344434333 444443 688999988888899999999999999999999555432 3345566666699999999
Q ss_pred HHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 191 GFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA 257 (416)
Q Consensus 191 a~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~ 257 (416)
+++++++++++++....+++.+++|++.++++++.++++|.+++...+++||+++.+++|.+..++.
T Consensus 242 ~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 242 ALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999988774
No 11
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=1.2e-08 Score=103.96 Aligned_cols=135 Identities=21% Similarity=0.269 Sum_probs=111.0
Q ss_pred HHHHHH-HHHHHHHhh---hcC----ccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898 118 TAFPIW-VSLGCLLGL---VKP----SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI 189 (416)
Q Consensus 118 ~~~pl~-i~~~~l~gl---~~P----~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl 189 (416)
++.|++ .++|+++++ ..| +.+....+.+....+|+.|+.+|.++.....+... +.+......+.+++++|+
T Consensus 243 ~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii~P~ 321 (385)
T PF03547_consen 243 KNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLIILPL 321 (385)
T ss_pred hCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHH
Confidence 343444 355665543 345 66667777889999999999999999876554332 334445568889999999
Q ss_pred HHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 014898 190 SGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLT 253 (416)
Q Consensus 190 la~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l 253 (416)
+++++...++++++....+++.+++|++..+.+++..++.|.+.+...+.++++++++++|+|+
T Consensus 322 i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 322 IGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999984
No 12
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=98.92 E-value=9.9e-10 Score=101.47 Aligned_cols=176 Identities=19% Similarity=0.213 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhhhcCccchhh---hH--HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898 118 TAFPIWVSLGCLLGLVKPSSFNWV---QP--KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGF 192 (416)
Q Consensus 118 ~~~pl~i~~~~l~gl~~P~~~~~~---~~--~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~ 192 (416)
+|+...+.+....+-+-|+....- .+ .+.++.+.-+++..|++++.|++..+.++++..+.+++..+.+.|-..|
T Consensus 23 ~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~ 102 (287)
T KOG4821|consen 23 QWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVY 102 (287)
T ss_pred chHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHH
Confidence 687777777777766767655321 11 1344566778899999999999999999999999999999999999999
Q ss_pred HHHHhcC---CChhHHHHHhHhccCchhhHHHHH-HHHhCCChHHHH-HHHHHHHHHHHHHHHHHHHHhcCc--------
Q 014898 193 LVSKLLN---LPSHYAAGLILVGCCPGGTASNIV-TYIARGNVALSV-LMTAASTLSAVVMTPFLTAKLAGQ-------- 259 (416)
Q Consensus 193 ~l~~~~~---l~~~~~~glvl~~~~P~~~~s~i~-t~~~~Gn~~ls~-~lt~istlls~~~~Pl~l~ll~g~-------- 259 (416)
++..+.. .++++..|+.+.+|||+..+|++. |..+|||..... .....+.+.+....|-....+..+
T Consensus 103 Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~LL~~~~~~~~~~ 182 (287)
T KOG4821|consen 103 LFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQMLLNRAPFAYGNP 182 (287)
T ss_pred HHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHccCCccccCc
Confidence 9887653 567899999999999999999986 999999984222 233344455555555555544321
Q ss_pred eeeec----hHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014898 260 YVAVD----AMGLFMSTLQVVLLPVLGGAFLNQYFHSL 293 (416)
Q Consensus 260 ~v~i~----~~~l~~~ll~~vllPl~lG~llr~~~p~~ 293 (416)
.+.+. ...++.+....+++|...|...+.+.|+-
T Consensus 183 a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 220 (287)
T KOG4821|consen 183 ATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKG 220 (287)
T ss_pred cccchHHHHHHHHHHhhcceEEehhhcccccccccCCc
Confidence 01111 22344556667899999999999998874
No 13
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.56 E-value=2e-06 Score=84.90 Aligned_cols=223 Identities=19% Similarity=0.224 Sum_probs=135.8
Q ss_pred HHHHHHhhhcCccch--hhhHH----HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 125 SLGCLLGLVKPSSFN--WVQPK----WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198 (416)
Q Consensus 125 ~~~~l~gl~~P~~~~--~~~~~----l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~ 198 (416)
.+|.++.-..|+.+. ...+. -....+.+-++++|.+++.|+....++|-- ..++.|+++-=++++.+++++
T Consensus 20 ~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~---~l~~~K~~~~~~~g~~~~~~~ 96 (312)
T PRK12460 20 LIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGG---VLTITKLGVAIVIGLLVGKFF 96 (312)
T ss_pred HHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhh---hhhhHHHHHHHHHHHHHHHHc
Confidence 456667777887642 11111 123468889999999999999988877632 344568999999999999999
Q ss_pred CCChhHHH-HHhHhccCchhhHHHH---HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCce--eeechHHHHHHH
Q 014898 199 NLPSHYAA-GLILVGCCPGGTASNI---VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQY--VAVDAMGLFMST 272 (416)
Q Consensus 199 ~l~~~~~~-glvl~~~~P~~~~s~i---~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~--v~i~~~~l~~~l 272 (416)
|.+.-.-. .+.+++++--. +... .+.++|-+.+-.... ++++-.-|+...+-.+.. .++|+..+
T Consensus 97 g~~g~~Gls~laiiaa~~~~-Ng~ly~al~~~yG~~~d~gA~~-----~~sl~~GPf~tm~aLga~gLA~ip~~~l---- 166 (312)
T PRK12460 97 GAEGIFGLSGLAIVAAMSNS-NGGLYAALMGEFGDERDVGAIS-----ILSLNDGPFFTMLALGAAGLANIPIMAL---- 166 (312)
T ss_pred CcccccchHHHHHHHHHhcC-cHHHHHHHHHHcCCHhhhhHHh-----hhhhccCcHHHHHHHHHHHHhcCChHHH----
Confidence 86553221 12222222222 2222 366666555533322 223333455444333221 23444332
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 273 LQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARM 352 (416)
Q Consensus 273 l~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarl 352 (416)
.-.++|+++|++++...+++.+..++-.+. ...+..+ ......+-+.+.+.++.-++..++.....+.++|+++|+
T Consensus 167 -v~lilpILiGmilGNld~~~~~~l~~Gi~f-~I~f~~f--~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rl 242 (312)
T PRK12460 167 -VAALLPLVLGMILGNLDPDMRKFLTKGGPL-LIPFFAF--ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRL 242 (312)
T ss_pred -HHHHHHHHHHHHHhccchhhHHHHhccceE-eHHHHHH--HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337999999999999887776766666554 1111111 112233556777778777777777888899999999999
Q ss_pred hCCCccceeeeE
Q 014898 353 LGIDVASCRTIS 364 (416)
Q Consensus 353 l~~~~~~~~al~ 364 (416)
+|.|++...+++
T Consensus 243 lg~~~~~g~li~ 254 (312)
T PRK12460 243 VGGTGIAGAAAS 254 (312)
T ss_pred hCCChhHHHHHH
Confidence 987776544444
No 14
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=98.38 E-value=2.6e-07 Score=93.31 Aligned_cols=250 Identities=22% Similarity=0.216 Sum_probs=169.4
Q ss_pred HHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhC
Q 014898 150 LTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYS-VMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIAR 228 (416)
Q Consensus 150 l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~v-l~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~ 228 (416)
+...|++.|++++.+.+.++.++++.+...+..++- ++|...+.....+..++..+...+...++|++..+++++.-.+
T Consensus 50 L~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~ 129 (371)
T KOG2718|consen 50 LNFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIK 129 (371)
T ss_pred HhHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHHHHHhcC
Confidence 447899999999999999999998888888888998 9999999999999888888889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHH-HHHHHhc----CceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCch
Q 014898 229 GNVALSVLMTAASTLSAVVMTP-FLTAKLA----GQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPP 303 (416)
Q Consensus 229 Gn~~ls~~lt~istlls~~~~P-l~l~ll~----g~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~ 303 (416)
+|.+....++.-.+.+++..+| ++++=+. +.....|...-..-++...+.|.-+|..++...++-...+...+..
T Consensus 130 ~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~ 209 (371)
T KOG2718|consen 130 LDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTT 209 (371)
T ss_pred ccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHH
Confidence 9999999999998888888888 3333221 2222222211122234567889999999988875533334444444
Q ss_pred HHHHHHHHHH-HHHHHhhHHHHhhhchHHHHHHHHHHHHH--HHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHH
Q 014898 304 IAVGTVAILC-GNAIAQSASAILTSGPQVALAAFLLHASG--FFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLAS 380 (416)
Q Consensus 304 is~i~ll~ii-~~~i~~~~~~i~~~~~~ill~~~ll~~~g--f~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~ 380 (416)
++.+..+++. ...+-..+..+......+. .-.+.+.+ +.+|+++.+ +-.+++..+++++||.+++.++..
T Consensus 210 ~stv~avi~~pl~s~~l~~~l~~~d~~~v~--~s~~~vv~~pl~lG~lL~~-----~~~k~t~~i~~~~~~vsv~~t~l~ 282 (371)
T KOG2718|consen 210 ISTVLAVILTPLLSILLGRALIPVDALGVI--ASILQVVGLPLALGLLLNK-----WFPKRTVAIEPGLPPVSVCLTILC 282 (371)
T ss_pred HHHHHHHHHHHHHHHhhchhhhcccchhhh--hhhhHHhHHHHHHHHHhcc-----cCccceeeeecCCCchHHHhhhhh
Confidence 5544333322 1111111222222222222 23344444 788888774 345688999999999999988887
Q ss_pred HhcC---CcchHHHHHHHHHHHHHHHHHHH
Q 014898 381 QHFG---SPMAAVPCAVSSVCHSIFGSVLA 407 (416)
Q Consensus 381 ~~f~---~p~~alP~~v~~l~q~i~~s~la 407 (416)
-.|+ |...-.. ..|.++|...+..++
T Consensus 283 ~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~ 311 (371)
T KOG2718|consen 283 LAFPPGENGYLFLF-FGYQILLLGAALPLA 311 (371)
T ss_pred hcCChhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 7775 1122222 456666654444433
No 15
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=98.10 E-value=0.00086 Score=66.28 Aligned_cols=270 Identities=17% Similarity=0.255 Sum_probs=148.5
Q ss_pred HHHHHHhhhcCccchh---hhHH---HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 125 SLGCLLGLVKPSSFNW---VQPK---WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198 (416)
Q Consensus 125 ~~~~l~gl~~P~~~~~---~~~~---l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~ 198 (416)
+++.++.-.+|+.++. ..+. =....+.+.++++|.++++|+....+||- ...++.|+++-=++++.+.+++
T Consensus 20 llgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg---~~ll~~K~~~~~~lgl~~~~~f 96 (314)
T PF03812_consen 20 LLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKG---GVLLLVKFIIGALLGLLVGKFF 96 (314)
T ss_pred HHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhh---hHHHHHHHHHHHHHHHHHHHHc
Confidence 5566677778877542 2211 13356888999999999999999988763 3344579999999999999999
Q ss_pred CCChh---HH---HHHhHhccCchhhHHHH--HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc--eeeechHHH
Q 014898 199 NLPSH---YA---AGLILVGCCPGGTASNI--VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ--YVAVDAMGL 268 (416)
Q Consensus 199 ~l~~~---~~---~glvl~~~~P~~~~s~i--~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~--~v~i~~~~l 268 (416)
+.+.- .. ..+.+++++-....+.. ++.++|-+.+-+.. . ++++..-|+...+..|. ..++|+..+
T Consensus 97 g~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA~-~----i~sl~~GPf~tMl~LG~sG~a~ip~~~l 171 (314)
T PF03812_consen 97 GPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGAF-S----ILSLNDGPFFTMLALGASGLANIPWMSL 171 (314)
T ss_pred CccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHHH-H----HHHhhhhHHHHHHHHhhccccCCCHHHH
Confidence 76532 11 22333333333332222 35555555554332 2 33555566666555443 245666553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898 269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYV 348 (416)
Q Consensus 269 ~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~l 348 (416)
.-.++|+++|+++-..-|++.+...+-.+.+-- ++.+-.+. ..|-+.+...+..=++..++..+......|+
T Consensus 172 -----v~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIP-F~~f~lGa--~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~ 243 (314)
T PF03812_consen 172 -----VAALLPIIIGMILGNLDPDFRKFLAPGVPILIP-FFGFALGA--GINLSNIIKAGLSGILLGVIVVVVTGIPLYL 243 (314)
T ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeee-hhhhhhcC--CCCHHHHHHhCcchHHHHHHHHHHHhHHHHH
Confidence 567899999999999988887766655433110 11111111 1244455554443333344444444455677
Q ss_pred HHHHh-CCCccceeeeEEecccccH-HHHHHHHHH--hcCCc---chHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014898 349 LARML-GIDVASCRTISIEVGMQNS-VLGVVLASQ--HFGSP---MAAVPCAVSSVCHSIFGSVLAGIWRRS 413 (416)
Q Consensus 349 larll-~~~~~~~~al~~~tg~qN~-~Lai~La~~--~f~~p---~~alP~~v~~l~q~i~~s~la~~~~r~ 413 (416)
.-|.. |.+ .....+..+..-|. +.-..+|.. .|. | .+..=++...++-.+..-++..||.||
T Consensus 244 ~dr~i~~~~--g~aG~A~sstAGnavatPaaiA~~dP~~~-~~~~~ATaQvAaavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 244 ADRLILKGN--GVAGAAISSTAGNAVATPAAIAAADPSFA-PYAASATAQVAAAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred HHHHHcCCC--CceeehHHhhhhhhhhhhHHHHHhChhhH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77764 333 22344443444442 333333322 221 2 122222334445555566666777665
No 16
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.80 E-value=0.00074 Score=66.42 Aligned_cols=271 Identities=17% Similarity=0.180 Sum_probs=147.3
Q ss_pred HHHHHHhhhcCccchh---hhHH---HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 125 SLGCLLGLVKPSSFNW---VQPK---WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198 (416)
Q Consensus 125 ~~~~l~gl~~P~~~~~---~~~~---l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~ 198 (416)
++|.++.-..|+.+.. ..+. -....+.+-++++|.+++.|+-...++|-- ..++.|+++-=++++.+++++
T Consensus 20 llga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~---~l~~~K~~i~~~~g~~~~~~~ 96 (314)
T TIGR00793 20 FLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSG---TLVVTKIAVAWVVAAIASRII 96 (314)
T ss_pred HHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcc---eeeeHHHHHHHHHHHHHHHHc
Confidence 4566677778877432 2211 133468889999999999999888877632 334568998889999999999
Q ss_pred CCCh---hHHHH---HhHhccCchhhHHH--HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc--eeeechHHH
Q 014898 199 NLPS---HYAAG---LILVGCCPGGTASN--IVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ--YVAVDAMGL 268 (416)
Q Consensus 199 ~l~~---~~~~g---lvl~~~~P~~~~s~--i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~--~v~i~~~~l 268 (416)
+.+. ....| +.+++++--...+. -++.++|-+.+-.... ++++-.=|+...+..|. ..++|+..+
T Consensus 97 g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~~-----i~sl~~GPf~TMi~LG~sGlA~ip~~~l 171 (314)
T TIGR00793 97 PEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFV-----LMSLESGPLMTMVILGTAGIASFEPHVF 171 (314)
T ss_pred CcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhhh-----hhhhccCcHHHHHHHhhccCCCCCHHHH
Confidence 8654 11112 22222222211111 2366666555533322 23444456666555443 235666553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898 269 FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYV 348 (416)
Q Consensus 269 ~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~l 348 (416)
.-.++|+++|+++-..-|++.|.+.+-.+.+-- +..+-.+ -..|-+.+...+..-++..++.........|+
T Consensus 172 -----v~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIp-Ff~FaLG--aginl~~i~~aGl~GIlLGl~v~~vtG~~~~~ 243 (314)
T TIGR00793 172 -----VGAVLPFLVGFALGNLDPELRDFFSKAVQTLIP-FFAFALG--NTIDLGVIIQTGLLGILLGVSVIILTGIPLIL 243 (314)
T ss_pred -----HHHHHHHHHHHHHhcCCHHHHHHhccCCCeeee-hhhhhhc--CCCCHHHHHHhCcchHHHHHHHHHHHhHHHHH
Confidence 567899999999999888887766655443111 1111111 12244455555443333344444455567788
Q ss_pred HHHHhC-CCccceeeeEEecccccH-HHHHHHHH--HhcCC--cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014898 349 LARMLG-IDVASCRTISIEVGMQNS-VLGVVLAS--QHFGS--PMAAVPCAVSSVCHSIFGSVLAGIWRRS 413 (416)
Q Consensus 349 larll~-~~~~~~~al~~~tg~qN~-~Lai~La~--~~f~~--p~~alP~~v~~l~q~i~~s~la~~~~r~ 413 (416)
.-|+++ .+... ..+..+..-|. +.-..+|. -.|.. +.+..=++-..+.-.+..-++..||.||
T Consensus 244 ~dr~~~g~~g~a--G~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr 312 (314)
T TIGR00793 244 ADKFIGGGDGTA--GIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKK 312 (314)
T ss_pred HHHHhcCCCCch--hhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888774 23222 33333333442 33333332 22310 1111112234455566667777788665
No 17
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.57 E-value=0.044 Score=55.39 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=85.3
Q ss_pred HHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH-HHHHhCCCh
Q 014898 153 TMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI-VTYIARGNV 231 (416)
Q Consensus 153 ~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i-~t~~~~Gn~ 231 (416)
.=..+|.+++.+++....+++....+..+......=+.+|.+.+.-..|...+ +.+++|+|.+.-+ +++-+|.|.
T Consensus 67 lG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~ 142 (352)
T COG3180 67 LGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGADL 142 (352)
T ss_pred HHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCCh
Confidence 33457889999999988888888888888888888888998888765665544 4679999998876 599999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014898 232 ALSVLMTAASTLSAVVMTPFLTAKLAG 258 (416)
Q Consensus 232 ~ls~~lt~istlls~~~~Pl~l~ll~g 258 (416)
.....+..+=-+.-..+.|+....+.|
T Consensus 143 ~~VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 143 RLVALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999888999999998874
No 18
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.55 E-value=0.12 Score=52.02 Aligned_cols=208 Identities=19% Similarity=0.305 Sum_probs=129.4
Q ss_pred HHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH-HHHHh
Q 014898 149 GLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI-VTYIA 227 (416)
Q Consensus 149 ~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i-~t~~~ 227 (416)
...++=..+|.+.+.+.+.+....+.......+......-+.+|.+.+..+.|...+ +++++|+|.+.-+ +++..
T Consensus 30 ~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~d~~TA----~~~~~PGg~s~m~~la~~~ 105 (318)
T PF05145_consen 30 GQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRISGLDRATA----FFASMPGGLSEMVALAEEY 105 (318)
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH----HHHcCCccHHHHHHHHHHc
Confidence 334444567999999999988777777777777778888888888888888776443 5789999998776 59999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCc----eeeechH---HHHHHHHHHHHHHHHHHHHHHHH-hHH--H----
Q 014898 228 RGNVALSVLMTAASTLSAVVMTPFLTAKLAGQ----YVAVDAM---GLFMSTLQVVLLPVLGGAFLNQY-FHS--L---- 293 (416)
Q Consensus 228 ~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~----~v~i~~~---~l~~~ll~~vllPl~lG~llr~~-~p~--~---- 293 (416)
|+|...-+....+=.++-++++|+...++.+. ..+.+.. .-...+...+.+-.+.|.+.|+. .|. .
T Consensus 106 gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpm 185 (318)
T PF05145_consen 106 GADTRRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLWLALLALAALAGGLLARRLRIPAPWLLGPM 185 (318)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999999999887653 1111110 01112233333444444444443 232 0
Q ss_pred -----HHH---HhCcCchHHHHHHHHHHHHHHHhh--HHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHhCCCccce
Q 014898 294 -----VKF---VSPLMPPIAVGTVAILCGNAIAQS--ASAILT---SGPQVALAAFLLHASGFFFGYVLARMLGIDVASC 360 (416)
Q Consensus 294 -----~~~---i~~~l~~is~i~ll~ii~~~i~~~--~~~i~~---~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~ 360 (416)
.+. ....++......--++++..++.. .+.+.+ .....+...+.+...++.++|+++++.+.|..+.
T Consensus 186 l~~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~ 265 (318)
T PF05145_consen 186 LVSAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTA 265 (318)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 011 111122211112222334444432 222222 1223345566667788999999999998887543
No 19
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.26 E-value=0.2 Score=54.81 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHhHhccCchhhHHH
Q 014898 144 KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHY--AAGLILVGCCPGGTASN 221 (416)
Q Consensus 144 ~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~--~~glvl~~~~P~~~~s~ 221 (416)
.+..+.+.++||..|+.++++++++..++ .+..+. .+.++.-+++++++..++.+... ..|..+..+ .++....
T Consensus 58 ~laelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g~-~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S-Staiv~~ 133 (621)
T PRK03562 58 HFAEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGGA-LQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS-STAIAMQ 133 (621)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 45677888999999999999999865322 233333 45655555666677777765433 334443333 2334444
Q ss_pred HHHHHhCCChH---HHHHHHHHHHHHH
Q 014898 222 IVTYIARGNVA---LSVLMTAASTLSA 245 (416)
Q Consensus 222 i~t~~~~Gn~~---ls~~lt~istlls 245 (416)
++...-.-+.. .+.+...+.-+++
T Consensus 134 ~L~e~~~l~t~~G~~~l~~ll~~Dl~~ 160 (621)
T PRK03562 134 AMNERNLMVTQMGRSAFAILLFQDIAA 160 (621)
T ss_pred HHHHhccccCchHHHHHHHHHHHHHHH
Confidence 45444322222 3344444444443
No 20
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.17 E-value=0.38 Score=52.49 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHhHhccCchhhHHH
Q 014898 144 KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYA--AGLILVGCCPGGTASN 221 (416)
Q Consensus 144 ~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~--~glvl~~~~P~~~~s~ 221 (416)
.+..+.+.++||..|+.++++++++..+ +.+..+. .+.++.-++.+++...++.+...+ .|+. ++.+.++....
T Consensus 58 ~laelGvv~LLF~iGLel~~~~l~~~~~--~~~~~g~-~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~-la~SSTaiv~~ 133 (601)
T PRK03659 58 HFSELGVVFLMFIIGLELNPSKLWQLRR--SIFGVGA-AQVLLSAAVLAGLLMLTDFSWQAAVVGGIG-LAMSSTAMALQ 133 (601)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHHHHH
Confidence 4566788999999999999999986533 2333333 345444434555555666654322 3322 23334444445
Q ss_pred HHHHHh
Q 014898 222 IVTYIA 227 (416)
Q Consensus 222 i~t~~~ 227 (416)
++..+-
T Consensus 134 iL~e~~ 139 (601)
T PRK03659 134 LMREKG 139 (601)
T ss_pred HHHHcc
Confidence 555443
No 21
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=97.14 E-value=0.06 Score=54.26 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=120.2
Q ss_pred HHHHHHhhhcCccc--hhhhHH----HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 125 SLGCLLGLVKPSSF--NWVQPK----WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198 (416)
Q Consensus 125 ~~~~l~gl~~P~~~--~~~~~~----l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~ 198 (416)
.++.++.-..|+.+ ..+.+. -....+.+-++++|.++++++....++|-- ..++.++.+-=++++.+++.+
T Consensus 22 ~~g~~i~tf~P~~~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~---~l~~~k~~~~~~~~~~~~~~~ 98 (326)
T PRK05274 22 LLGALINTFAPGALYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGG---TLLLTKFAVAALVGVIAGKFI 98 (326)
T ss_pred HHHHHHHHhCCcceeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhch---hHHHHHHHHHHHHHHHhhhcc
Confidence 45666666778742 222211 123467888999999999999988777632 233457777777888888887
Q ss_pred CCCh---hHHHHHhH------hccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCce--eeechHH
Q 014898 199 NLPS---HYAAGLIL------VGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQY--VAVDAMG 267 (416)
Q Consensus 199 ~l~~---~~~~glvl------~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~--v~i~~~~ 267 (416)
+.+. ....|.-. +.-.=++...... ..++-+...... .+++.-.-|+....+.+.. -.++...
T Consensus 99 g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~-~~~g~~~d~ga~-----i~lsl~~Gp~~tM~lL~aagla~~p~~~ 172 (326)
T PRK05274 99 GEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALM-GQYGTKEDAGAF-----VLMSLEDGPFMTMLALGAAGLASFPPPA 172 (326)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HHhCCCCCcchH-----HHHHHhhhHHHHHHHHHhhCcccCCCch
Confidence 6432 11111111 1111122222222 222212111111 1222233354444443321 2344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHH
Q 014898 268 LFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGY 347 (416)
Q Consensus 268 l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~ 347 (416)
+. -+++|+++|+.++.+.+++.+...+-...+ +=.........-+.+.+...++.-.+..+..+.....++|
T Consensus 173 li-----~allplliG~~lgnl~~~l~~~~~~Gi~~l---Lp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~ 244 (326)
T PRK05274 173 LV-----GAVLPLLVGFILGNLDPELRQFLGKAVPVL---IPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLY 244 (326)
T ss_pred hh-----HHHHHHHHHHHHHhHHHhhHHHhcCCcEEE---HHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhH
Confidence 32 223999999999998887777666655441 1011111112224455555565555556666667777899
Q ss_pred HHHHHhCCCccceeeeEEecccccH
Q 014898 348 VLARMLGIDVASCRTISIEVGMQNS 372 (416)
Q Consensus 348 llarll~~~~~~~~al~~~tg~qN~ 372 (416)
+..|+++.+++ ..-.+..++..|.
T Consensus 245 ~~~Rl~~~~~g-~~g~a~~ttaG~a 268 (326)
T PRK05274 245 LADRLIGGGNG-VAGAAAGSTAGNA 268 (326)
T ss_pred hHhheeecCCC-cchHHHHHHHHHH
Confidence 99999865432 2223333455564
No 22
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.52 Score=48.82 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=79.4
Q ss_pred HHHHHHhh---hcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHH-HHHHHHHH-hcC
Q 014898 125 SLGCLLGL---VKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMP-ISGFLVSK-LLN 199 (416)
Q Consensus 125 ~~~~l~gl---~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~P-lla~~l~~-~~~ 199 (416)
+.|+++|- .....-+.....+....+-+.||..|+..+.+++++..|+. ..+...--+..| .++..... .++
T Consensus 38 laGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g 114 (397)
T COG0475 38 LAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLLLGILG 114 (397)
T ss_pred HHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 22222334444567788899999999999999999775542 222222334455 44422222 355
Q ss_pred CChh--HHHHHhHhccCchhhHHHHHHHHhCCChH---HHHHHHHHHHHHHHHHHHHHHHHhcCceeeec-hHHHHHHHH
Q 014898 200 LPSH--YAAGLILVGCCPGGTASNIVTYIARGNVA---LSVLMTAASTLSAVVMTPFLTAKLAGQYVAVD-AMGLFMSTL 273 (416)
Q Consensus 200 l~~~--~~~glvl~~~~P~~~~s~i~t~~~~Gn~~---ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~-~~~l~~~ll 273 (416)
.+.. ...|..+ +..-++..+.++.+.-+=+.+ .......+.-+.+...+.+...+..+...+.+ ...+...+.
T Consensus 115 ~~~~~al~lg~~l-~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~ 193 (397)
T COG0475 115 LSLIAALFLGAAL-ALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAIL 193 (397)
T ss_pred cChHHHHHHHHHH-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHH
Confidence 5443 3333333 233334455555553333333 44555556666666666666655544343333 234433333
Q ss_pred HHHHHHHHHH
Q 014898 274 QVVLLPVLGG 283 (416)
Q Consensus 274 ~~vllPl~lG 283 (416)
....+=..+|
T Consensus 194 ~f~~~~l~~g 203 (397)
T COG0475 194 AFLALLLLLG 203 (397)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 23
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.72 E-value=0.61 Score=46.61 Aligned_cols=134 Identities=21% Similarity=0.195 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhh---hcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 014898 119 AFPIWVSLGCLLGL---VKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS 195 (416)
Q Consensus 119 ~~pl~i~~~~l~gl---~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~ 195 (416)
...+.+++|.+++- ..|+..+.-........+-.....+|.++++.|+.+.-.+ .+....+ .....=.+++.++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~--~~~~~~~-~v~~~~~~~~~lg 104 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWK--GLLIIII-VVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCcc--HHHHHHH-HHHHHHHHHHHHH
Confidence 34667778888873 2344443333333334566777778999999999875332 3333333 3444445566777
Q ss_pred -HhcCCChhHHHHHhHhccCchhhHHHHHH----HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 196 -KLLNLPSHYAAGLILVGCCPGGTASNIVT----YIARGNVALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 196 -~~~~l~~~~~~glvl~~~~P~~~~s~i~t----~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
+.+++|+..+ -++-.+.+=||.++..-+ +--+-|.+.++..+++-..++++..|.+..++
T Consensus 105 ~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 105 RRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 9999987644 244444555555555431 22366788999999999999999999998765
No 24
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.62 E-value=1.4 Score=47.61 Aligned_cols=75 Identities=27% Similarity=0.445 Sum_probs=47.7
Q ss_pred HHHHHHhhhcCccch--hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 014898 125 SLGCLLGLVKPSSFN--WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPS 202 (416)
Q Consensus 125 ~~~~l~gl~~P~~~~--~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~ 202 (416)
+.|+++|-....... .....+..+.+.+.||..|+.++++++++. ++....+...++++.-+++++++..++.+.
T Consensus 38 laGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (558)
T PRK10669 38 LAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV---KSIAIPGAIAQIAVATLLGMALSAVLGWSL 114 (558)
T ss_pred HHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 455555433322221 223456778889999999999999999754 233344455566666666777777777543
No 25
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=96.30 E-value=1.6 Score=48.91 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhcCccch--------hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhc
Q 014898 119 AFPIWVSLGCLLGLVKPSSFN--------WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAM 172 (416)
Q Consensus 119 ~~pl~i~~~~l~gl~~P~~~~--------~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~ 172 (416)
..++.+++|+++|-..-..+. .....++-+.+.+.+|..|+.++.+.+++..+.
T Consensus 40 ~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrs 101 (810)
T TIGR00844 40 ESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVS 101 (810)
T ss_pred HHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHH
Confidence 335555677777654222221 112225667899999999999999999955443
No 26
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=96.12 E-value=0.54 Score=42.21 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH-HHH
Q 014898 147 IIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI-VTY 225 (416)
Q Consensus 147 ~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i-~t~ 225 (416)
..+..++-..+|++.+.+++++..+.....+...+....+.=..++.+.+..+.|...+ +++++|+|...-. .+.
T Consensus 50 ~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta----~La~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 50 ALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDPLTA----FLATSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH----HHHhCCchHHHHHHHHH
Confidence 34455566778999999999988777666666666666666666788888887776444 5789999998775 488
Q ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 226 IARGNVALSVLMTAASTLSAVVMTPFLTAK 255 (416)
Q Consensus 226 ~~~Gn~~ls~~lt~istlls~~~~Pl~l~l 255 (416)
..|+|...-+....+=.++-.+..|++..+
T Consensus 126 ~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 126 ELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999888888888888987654
No 27
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.09 E-value=2.7 Score=45.45 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcCcc--c--hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhc
Q 014898 123 WVSLGCLLGLVKPSS--F--NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAM 172 (416)
Q Consensus 123 ~i~~~~l~gl~~P~~--~--~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~ 172 (416)
.++.|.++|-..+.. + ......+..+++++++|..|++++.+++++..+.
T Consensus 36 ~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~ 89 (562)
T PRK05326 36 FLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGP 89 (562)
T ss_pred HHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHH
Confidence 335566666433221 1 1234457788999999999999999999976543
No 28
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.06 E-value=0.15 Score=51.83 Aligned_cols=108 Identities=21% Similarity=0.329 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHH--h-HHHHHHHhCcCchHHHHHHHHHHHHHHHhh--HHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898 274 QVVLLPVLGGAFLNQY--F-HSLVKFVSPLMPPIAVGTVAILCGNAIAQS--ASAILTSGPQVALAAFLLHASGFFFGYV 348 (416)
Q Consensus 274 ~~vllPl~lG~llr~~--~-p~~~~~i~~~l~~is~i~ll~ii~~~i~~~--~~~i~~~~~~ill~~~ll~~~gf~lg~l 348 (416)
.-+++-+++|.+++++ + ++..+.+.++. -.+++=.+++..++.. .+.+. ..+.+.+...+...+++.++++
T Consensus 7 ~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (385)
T PF03547_consen 7 LPIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDLL-SLWFIPVFAFIIFILGLLLGFL 82 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhhh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888875 1 22222222222 1233333334444432 12222 2334445566777888899999
Q ss_pred HHHHhCCCccceeeeEEecccccH-HHHHHHHHHhcCC
Q 014898 349 LARMLGIDVASCRTISIEVGMQNS-VLGVVLASQHFGS 385 (416)
Q Consensus 349 larll~~~~~~~~al~~~tg~qN~-~Lai~La~~~f~~ 385 (416)
..|.++.+++++......++..|. -+++.+..+.|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~ 120 (385)
T PF03547_consen 83 LSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE 120 (385)
T ss_pred HHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc
Confidence 999999999999999998888996 7899999999975
No 29
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=96.05 E-value=1.8 Score=43.13 Aligned_cols=268 Identities=15% Similarity=0.118 Sum_probs=129.2
Q ss_pred HHHHHHHHH--HHHHHHh-h--hcC-ccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898 116 ISTAFPIWV--SLGCLLG-L--VKP-SSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI 189 (416)
Q Consensus 116 l~~~~pl~i--~~~~l~g-l--~~P-~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl 189 (416)
+...+|+.+ .+|.+.| . .++ +..+.+...+.++++|..+|..-.+-+.++-. .............+..+-+
T Consensus 7 ~~~ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 83 (321)
T TIGR00946 7 LETVLPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQ---KSQSPVVLFLWGAFSGSYA 83 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344455555 4455553 2 233 33455667788899999999765543222111 1111223333345666777
Q ss_pred HHHHHHH-hcCCChhHHHHHhHhccCchhh-HHH-HHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHHhcCc-ee
Q 014898 190 SGFLVSK-LLNLPSHYAAGLILVGCCPGGT-ASN-IVTYIARGNVALS----VLMTAASTLSAVVMTPFLTAKLAGQ-YV 261 (416)
Q Consensus 190 la~~l~~-~~~l~~~~~~glvl~~~~P~~~-~s~-i~t~~~~Gn~~ls----~~lt~istlls~~~~Pl~l~ll~g~-~v 261 (416)
+++.+++ .++.+........+.++.+-.. ... +..... ||...+ .....+.+.+...+.-..+.-..++ .-
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (321)
T TIGR00946 84 LIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-GEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGGE 162 (321)
T ss_pred HHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-cccchhhhHHHHHHHhccchhHHHHHHHHhcccccccc
Confidence 8888888 6666666665555555544322 223 334444 555432 1111122222222222111101111 10
Q ss_pred e--ech----HHHHHHHHH-HHHHHHHHHHHHHHHh---HHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHH
Q 014898 262 A--VDA----MGLFMSTLQ-VVLLPVLGGAFLNQYF---HSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQV 331 (416)
Q Consensus 262 ~--i~~----~~l~~~ll~-~vllPl~lG~llr~~~---p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~i 331 (416)
+ -+. ....++++. -.++-.++|+.++... |+..++....++..+.-+.++.++..+.. ..........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~ 240 (321)
T TIGR00946 163 GSGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDA 240 (321)
T ss_pred ccchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHH
Confidence 0 011 122333322 2445566677766542 44433322222222222333334433322 2222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchH
Q 014898 332 ALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAA 389 (416)
Q Consensus 332 ll~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~a 389 (416)
.....+=.+..-.+.+.+.+.++.+....++..+++++--...+..+|..+-.+++.+
T Consensus 241 ~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~a 298 (321)
T TIGR00946 241 ILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELA 298 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHH
Confidence 3333322334444556667778888888888888888888888888888876555433
No 30
>PRK09903 putative transporter YfdV; Provisional
Probab=95.76 E-value=2.4 Score=42.21 Aligned_cols=267 Identities=12% Similarity=0.058 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHH--HHHHhh--hcCcc-chhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH
Q 014898 115 LISTAFPIWVSL--GCLLGL--VKPSS-FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI 189 (416)
Q Consensus 115 ~l~~~~pl~i~~--~~l~gl--~~P~~-~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl 189 (416)
++...+|+.+.+ |.+.+- .+|+. .+.+.+.+.++++|..+|..-.+.+.++... +.+......+ .++..-+
T Consensus 5 ~~~~ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~ 80 (314)
T PRK09903 5 FIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA---DTRLTLVSLV-VIVGCFF 80 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh---hhhHHHHHHH-HHHHHHH
Confidence 445556666544 444433 23433 4566677888999999998776666555432 2233333333 3444445
Q ss_pred HHHHHHH-hcCCChhHHHHHhHhccCch-hhHHHHHHHHhCCChHH-HHHHHHHHHHHHHHHHHHHHHHhcCc-e---ee
Q 014898 190 SGFLVSK-LLNLPSHYAAGLILVGCCPG-GTASNIVTYIARGNVAL-SVLMTAASTLSAVVMTPFLTAKLAGQ-Y---VA 262 (416)
Q Consensus 190 la~~l~~-~~~l~~~~~~glvl~~~~P~-~~~s~i~t~~~~Gn~~l-s~~lt~istlls~~~~Pl~l~ll~g~-~---v~ 262 (416)
+++.+++ .++.+........+..+.+- |-...-.....=||.+. ++...........++.|.....+... . -.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 160 (314)
T PRK09903 81 FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK 160 (314)
T ss_pred HHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 6666664 44555433323333333332 22333333333355432 22222222334455566665555311 1 11
Q ss_pred echHHHHHHH-HHHHHHHHHHHHHHHHH---hHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHH
Q 014898 263 VDAMGLFMST-LQVVLLPVLGGAFLNQY---FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLL 338 (416)
Q Consensus 263 i~~~~l~~~l-l~~vllPl~lG~llr~~---~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll 338 (416)
-...+.++++ ---.++..++|+.++.. .|+..++.-+.++..+.-+-++.++..++..... .....+...+.=
T Consensus 161 ~~~~~~l~~~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~~~~~~~~~~K 237 (314)
T PRK09903 161 NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FSAEIAYNTFLK 237 (314)
T ss_pred chHHHHHHHHHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccHHHHHHHHHH
Confidence 0112222322 12456666777776654 3554443333333222223333445555443211 112222222211
Q ss_pred HHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcch
Q 014898 339 HASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMA 388 (416)
Q Consensus 339 ~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~ 388 (416)
.+..-.+.+.+...++.+.....+..+++++--...+..+|..+-.|+..
T Consensus 238 li~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~ 287 (314)
T PRK09903 238 LILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRT 287 (314)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHH
Confidence 22222233444555688888888888888888888888889888656643
No 31
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.74 E-value=2.1 Score=41.45 Aligned_cols=165 Identities=18% Similarity=0.182 Sum_probs=80.8
Q ss_pred HHHHHHHhhhcCccc--hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH--HHHHHHHhcC
Q 014898 124 VSLGCLLGLVKPSSF--NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI--SGFLVSKLLN 199 (416)
Q Consensus 124 i~~~~l~gl~~P~~~--~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl--la~~l~~~~~ 199 (416)
++.|+++|-..-+.. .+....+....+.+.||..|++++.+++++..|+ ....+. ..+ +.|. +++..+..++
T Consensus 23 il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~--~~~~~~-~~~-~~~~~~~~~~~~~~~~ 98 (273)
T TIGR00932 23 LLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKA--AFGVGV-LQV-LVPGVLLGLLLGHLLG 98 (273)
T ss_pred HHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHHHH-HHH-HHHHHHHHHHHHHHHC
Confidence 355666652211111 1223456778899999999999999999976543 222332 223 3452 2344566666
Q ss_pred CChh--HHHHHhHhccCchhhHHHHHHHH--hCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHHH
Q 014898 200 LPSH--YAAGLILVGCCPGGTASNIVTYI--ARGNV-ALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQ 274 (416)
Q Consensus 200 l~~~--~~~glvl~~~~P~~~~s~i~t~~--~~Gn~-~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll~ 274 (416)
.+.. ...|..+....|.. ...++..+ .+.+. .+......++-+++.+..-+......+.. .+..........
T Consensus 99 ~~~~~~~~lg~~ls~Ts~~v-~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~ 175 (273)
T TIGR00932 99 LALGAAVVIGIILALSSTAV-VVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLK 175 (273)
T ss_pred CCHHHHHHHHHHHHHhHHHH-HHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHH
Confidence 5433 22333333322221 12222222 22232 24556666788888777666655543321 122222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 014898 275 VVLLPVLGGAFLNQYFHSLVK 295 (416)
Q Consensus 275 ~vllPl~lG~llr~~~p~~~~ 295 (416)
.+..-+..+.+.|+..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~ 196 (273)
T TIGR00932 176 VFLAFLLLVLLGRWLLRPVLR 196 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555444433
No 32
>COG0679 Predicted permeases [General function prediction only]
Probab=95.46 E-value=3.1 Score=41.50 Aligned_cols=266 Identities=17% Similarity=0.164 Sum_probs=139.0
Q ss_pred HHHHHHH--HHHHHHh---hhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHH
Q 014898 118 TAFPIWV--SLGCLLG---LVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGF 192 (416)
Q Consensus 118 ~~~pl~i--~~~~l~g---l~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~ 192 (416)
..+|+.+ .+|.+++ ..-++..+.+.+.+.++++|.+.|..=.+-+.++. ++.+.+...++...+..=+..+
T Consensus 8 ~vlpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 83 (311)
T COG0679 8 VVLPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAFFLLAL 83 (311)
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 4444443 23334334567778889999999986555555444 2333444444444444433344
Q ss_pred HHHHhcCCChhHHHHHhHhccCchhhHH-HHHHHHhCCChHHHHHHHHHHHHH-HHHHHHHHHHHhcCceeeechHHHHH
Q 014898 193 LVSKLLNLPSHYAAGLILVGCCPGGTAS-NIVTYIARGNVALSVLMTAASTLS-AVVMTPFLTAKLAGQYVAVDAMGLFM 270 (416)
Q Consensus 193 ~l~~~~~l~~~~~~glvl~~~~P~~~~s-~i~t~~~~Gn~~ls~~lt~istll-s~~~~Pl~l~ll~g~~v~i~~~~l~~ 270 (416)
...+.+..+.....+..+.+.-|-...- .-.+...-||..++.......... ...+.-.+...-.++.-+...+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~ 163 (311)
T COG0679 84 IGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGTNKSLLSVLK 163 (311)
T ss_pred HHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 4444556667767777777777766644 446777778877776655533322 22222222222222222223334443
Q ss_pred HHHH-HHHHHHHHHHHHHHH---hHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHH-HHHHHHHH
Q 014898 271 STLQ-VVLLPVLGGAFLNQY---FHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFL-LHASGFFF 345 (416)
Q Consensus 271 ~ll~-~vllPl~lG~llr~~---~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~l-l~~~gf~l 345 (416)
+++. =.+.-.++|.+++.. .|+..++..+.++..+.-+.++..+..++.. ............... =.+..-..
T Consensus 164 ~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~--~~~~~~~~~~~~~~~~kll~~Pl~ 241 (311)
T COG0679 164 KLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFL--KLKGSKPPIILIALSLKLLLAPLV 241 (311)
T ss_pred HHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh--hhccccchhHHHHHHHHHHHHHHH
Confidence 3322 233444556666642 3554444333333333333344455555442 111111222222222 12344556
Q ss_pred HHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchH
Q 014898 346 GYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAA 389 (416)
Q Consensus 346 g~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~a 389 (416)
.+..++.+|.+..+..++.+++++--...+..+|..+-.++..+
T Consensus 242 ~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~la 285 (311)
T COG0679 242 ALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLA 285 (311)
T ss_pred HHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHH
Confidence 66677888898887777777777777777788888865555433
No 33
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.31 E-value=6.9 Score=44.52 Aligned_cols=109 Identities=12% Similarity=0.187 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHH-HHHHHHhcCCC---h-h----HHHHHhHhc
Q 014898 142 QPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPIS-GFLVSKLLNLP---S-H----YAAGLILVG 212 (416)
Q Consensus 142 ~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pll-a~~l~~~~~l~---~-~----~~~glvl~~ 212 (416)
...+..+.+.+.||..|+.++++.+++..|+ .+.+++. .+ +.|++ +++++..++.. . . ...|+.+.
T Consensus 104 l~~la~lGlillmFliGLE~Dl~~lr~~~k~--a~~ia~~-~~-ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS- 178 (832)
T PLN03159 104 LETMANLGLLYFLFLVGVEMDISVIRRTGKK--ALAIAIA-GM-ALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS- 178 (832)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhcchH--HHHHHHH-HH-HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-
Confidence 3456778888999999999999999865443 3334433 23 34443 44454444211 1 1 12222221
Q ss_pred cCchhhHHHHHHHHh--CCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 213 CCPGGTASNIVTYIA--RGNV-ALSVLMTAASTLSAVVMTPFLTAK 255 (416)
Q Consensus 213 ~~P~~~~s~i~t~~~--~Gn~-~ls~~lt~istlls~~~~Pl~l~l 255 (416)
..-.++.+.++..+- +.+. .++++...++-+++.+.+-+...+
T Consensus 179 ~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 179 VTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred HhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223333343322 3333 255666677777777666555443
No 34
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=94.01 E-value=2.7 Score=39.92 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 014898 166 LRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSA 245 (416)
Q Consensus 166 l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls 245 (416)
.+...++++.++.+....-++--...+.++++++++++....+.-=+ =+.+.+.-.++..|||.++.+..+.++-+++
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS--VTtpiAi~is~~iGG~~sLta~~VvitGi~G 147 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS--VTTPIAIEISEQIGGIPSLTAVFVVITGILG 147 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH--hhHHHHHHHHHHhCChHHHHHHHHHHHhhHH
Confidence 33444677888888888888888889999999999998776554322 1333444569999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 014898 246 VVMTPFLTAKL 256 (416)
Q Consensus 246 ~~~~Pl~l~ll 256 (416)
...-|.++.++
T Consensus 148 a~~g~~llk~~ 158 (215)
T PF04172_consen 148 AVLGPPLLKLL 158 (215)
T ss_pred HHhHHHHHhHc
Confidence 99999999887
No 35
>COG2855 Predicted membrane protein [Function unknown]
Probab=93.94 E-value=7.8 Score=39.15 Aligned_cols=133 Identities=22% Similarity=0.247 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhhcCcc--chhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 120 FPIWVSLGCLLGLVKPSS--FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL 197 (416)
Q Consensus 120 ~pl~i~~~~l~gl~~P~~--~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~ 197 (416)
+.+.+++|.+++...... ...-........+-+...-.|.++++.|+.+.-.+ . ...........=++++.+++.
T Consensus 40 l~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~--~-v~~~~~~l~~t~~~~~~lg~~ 116 (334)
T COG2855 40 LTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGS--G-VLIIAITLSSTFLFAYFLGKL 116 (334)
T ss_pred HHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCcc--H-HHHHHHHHHHHHHHHHHHHHH
Confidence 456667788777433222 22112222334455555666999999999876433 2 222223445555678899999
Q ss_pred cCCChhHHHHHhHhccCchhhHHHHHH----HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 198 LNLPSHYAAGLILVGCCPGGTASNIVT----YIARGNVALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 198 ~~l~~~~~~glvl~~~~P~~~~s~i~t----~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
+++|...+. ++-+++.=||.++..-+ .--+-|++.++..+++-..++.+..|.+..++
T Consensus 117 lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 117 LGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred hCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 999886653 45555666666655442 23355677888888888888999999998776
No 36
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=93.63 E-value=8 Score=39.54 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=65.2
Q ss_pred HHHHHHhcccCChhHHHHhhhchHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCC
Q 014898 151 TLTMLGMGMTLTLDDLRGALAMPKEIIS-GFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARG 229 (416)
Q Consensus 151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~-~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~G 229 (416)
+++++++|.-.++.-+ +.|||..+. +...|+.+.= ++..+..+|++...+..+-+.+.+=+.++-++-+.++.
T Consensus 109 ~LIFlGIGAMtDFgpl---lanP~~~ll~gaaAQ~GiF~--t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp- 182 (399)
T TIGR03136 109 CILFFGIGAMSDISFI---LARPWASITVALFAEMGTFA--TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLILAK- 182 (399)
T ss_pred HHHHHhccHHhcchHH---HhChHHHHHHHHHHHhhHHH--HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-
Confidence 4566788987755554 589999888 7888987754 44555667888888888888888877665555444442
Q ss_pred ChHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014898 230 NVALSVLMTAAS-TLSAVVMTPFLTAKLA 257 (416)
Q Consensus 230 n~~ls~~lt~is-tlls~~~~Pl~l~ll~ 257 (416)
|.--+++...-| .-+-++.-|-+++++.
T Consensus 183 ~Llg~IaVAAYsYMaLVPiiqPpimklLt 211 (399)
T TIGR03136 183 DLFVPISIIAYLYLSLTYAGYPYLIKLLV 211 (399)
T ss_pred HhHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 222222222222 2234556677888874
No 37
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=93.62 E-value=9 Score=38.70 Aligned_cols=101 Identities=23% Similarity=0.349 Sum_probs=67.9
Q ss_pred HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCC
Q 014898 151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGN 230 (416)
Q Consensus 151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn 230 (416)
+++++++|.-.++. -.+.|||..+.+...|+.+. .++..+..+|+++..+..+-+.+.+=+.++-++-+.++ -|
T Consensus 73 ~LIF~GIGAmtDFg---pllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~ 146 (360)
T PF03977_consen 73 PLIFMGIGAMTDFG---PLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PH 146 (360)
T ss_pred HHHHHHHhHHHhhH---HHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HH
Confidence 45667888777554 45589999999999999875 45566667788888888888888887766555544444 23
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 014898 231 VALSVLMTAAS-TLSAVVMTPFLTAKLA 257 (416)
Q Consensus 231 ~~ls~~lt~is-tlls~~~~Pl~l~ll~ 257 (416)
.--.++...-| .-+-++.-|-+++++.
T Consensus 147 LlgpIaVaAYsYMaLvPiiqPpimklLt 174 (360)
T PF03977_consen 147 LLGPIAVAAYSYMALVPIIQPPIMKLLT 174 (360)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence 32233333322 2345566788888885
No 38
>PRK10711 hypothetical protein; Provisional
Probab=93.30 E-value=1.3 Score=42.41 Aligned_cols=84 Identities=19% Similarity=0.097 Sum_probs=69.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Q 014898 171 AMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP 250 (416)
Q Consensus 171 ~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~P 250 (416)
++++.+..+...--++--..++.++++++++++....+.==+. +.+.+--.++..||+.++++..+.++-+++.+.-|
T Consensus 86 ~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~ 163 (231)
T PRK10711 86 ARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGH 163 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888888888999999999999987765542221 23334446999999999999999999999999999
Q ss_pred HHHHHh
Q 014898 251 FLTAKL 256 (416)
Q Consensus 251 l~l~ll 256 (416)
.++.++
T Consensus 164 ~llk~~ 169 (231)
T PRK10711 164 TLLNAM 169 (231)
T ss_pred HHHHHc
Confidence 999988
No 39
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=93.25 E-value=2.4 Score=42.65 Aligned_cols=107 Identities=19% Similarity=0.256 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH-HH
Q 014898 147 IIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV-TY 225 (416)
Q Consensus 147 ~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~-t~ 225 (416)
..+--++=..+|++.+.+++++..|.........+.-....=+.++.+.++.+.|. .-.+++.+|+|...-.. +.
T Consensus 207 ~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~ 282 (318)
T PF05145_consen 207 NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIAL 282 (318)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHH
Confidence 33444455678999999999887665555555555556666777888888887765 34568899999988764 89
Q ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 226 IARGNVALSVLMTAASTLSAVVMTPFLTAKLA 257 (416)
Q Consensus 226 ~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~ 257 (416)
..|.|.++......+=.+.-.++.|++..++.
T Consensus 283 ~l~~d~~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 283 ALGADVAFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888899999988764
No 40
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=93.12 E-value=0.55 Score=46.93 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhCcCchHH----HHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHH
Q 014898 275 VVLLPVLGGAFLNQYFHSLVKFVSPLMPPIA----VGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLA 350 (416)
Q Consensus 275 ~vllPl~lG~llr~~~p~~~~~i~~~l~~is----~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~lla 350 (416)
..++.+++|++++.+..+..++.++-.+..+ -..+++ ....-+-+.+.+.++..++...+.....+.++|+++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL---lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg 104 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL---LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH---HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4567778999999733222223333222222 112221 112223455666777667777777888899999999
Q ss_pred -HHhCCCccceeeeEEecccccHHHHHHHHHHh
Q 014898 351 -RMLGIDVASCRTISIEVGMQNSVLGVVLASQH 382 (416)
Q Consensus 351 -rll~~~~~~~~al~~~tg~qN~~Lai~La~~~ 382 (416)
|++|+|++.+.-++-.++..=.+-.++.+...
T Consensus 105 ~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i 137 (305)
T PF03601_consen 105 RRLFGLDRKLAILIAAGTSICGASAIAATAPVI 137 (305)
T ss_pred HHHhCCCHHHHHHHHhhcccchHHHHHHHcccc
Confidence 99999988777766666655444444444333
No 41
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=93.02 E-value=1.5 Score=42.03 Aligned_cols=81 Identities=15% Similarity=0.138 Sum_probs=68.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhh---HHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 014898 171 AMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGT---ASNIVTYIARGNVALSVLMTAASTLSAVV 247 (416)
Q Consensus 171 ~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~---~s~i~t~~~~Gn~~ls~~lt~istlls~~ 247 (416)
|+++.+..++.+--++--+.++.++++++++++....+ .|=.+ .+--.++..||+.++++..+.++-+++.+
T Consensus 91 ~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai 165 (232)
T PRK04288 91 KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYA 165 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 67788889988888888889999999999999766554 44444 34446999999999999999999999999
Q ss_pred HHHHHHHHh
Q 014898 248 MTPFLTAKL 256 (416)
Q Consensus 248 ~~Pl~l~ll 256 (416)
.-|.++.++
T Consensus 166 ~g~~llk~~ 174 (232)
T PRK04288 166 LGAKFLKLF 174 (232)
T ss_pred HHHHHHHHc
Confidence 999999988
No 42
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=92.94 E-value=1.6 Score=41.72 Aligned_cols=85 Identities=22% Similarity=0.215 Sum_probs=67.3
Q ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Q 014898 170 LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMT 249 (416)
Q Consensus 170 ~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~ 249 (416)
.++++.+..+...--++--..++.++++++++++....+.-= +=+.+.+--.++..||+.++++..+.++-+++..+-
T Consensus 84 k~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pk--SvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 84 KKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPK--SVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhH--HhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 366677888887777777788999999999998776644321 113334444699999999999999999999999999
Q ss_pred HHHHHHh
Q 014898 250 PFLTAKL 256 (416)
Q Consensus 250 Pl~l~ll 256 (416)
|.++.++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 9999888
No 43
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=92.91 E-value=0.14 Score=51.88 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc---C----CChhHHHHHhHhccCc
Q 014898 143 PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL---N----LPSHYAAGLILVGCCP 215 (416)
Q Consensus 143 ~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~---~----l~~~~~~glvl~~~~P 215 (416)
..+...++|.+++..|-++-. ++++.-.+.+.++-..+.+++++|+.+.++.... + .||.+...+++..++|
T Consensus 284 ~llG~~~IP~illvLGgnL~~-g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~P 362 (408)
T KOG2722|consen 284 TLLGDGAIPCILLVLGGNLIQ-GLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASP 362 (408)
T ss_pred HHhccccchhhhhhhcccccc-CchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCC
Confidence 356777899999999988854 4444444555555566679999999998877654 2 4678889999999999
Q ss_pred hhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 216 GGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAK 255 (416)
Q Consensus 216 ~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~l 255 (416)
++.....+|.+.|--.+=+......+-..+.+.+-+|...
T Consensus 363 pAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~ 402 (408)
T KOG2722|consen 363 PAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVF 402 (408)
T ss_pred chhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999887777777777777776666655543
No 44
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=91.50 E-value=17 Score=36.81 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhhc----CccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH-
Q 014898 121 PIWVSLGCLLGLVK----PSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVS- 195 (416)
Q Consensus 121 pl~i~~~~l~gl~~----P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~- 195 (416)
.+.+++|.+++..+ |+....-.+......+-.....+|.+++++|+.+.-. +.+...... .+..=++++.++
T Consensus 35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~--~~l~~~~~~-v~~~~~~~~~~g~ 111 (335)
T TIGR00698 35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGP--NEIVADTLI-LTSTFFLTVFLGS 111 (335)
T ss_pred HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhH--HHHHHHHHH-HHHHHHHHHHHHH
Confidence 45667777776532 2332222222233445556667799999999976532 233332222 222223345565
Q ss_pred HhcCCChhHHHHHhHhccCchhhHHHHH-H---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 196 KLLNLPSHYAAGLILVGCCPGGTASNIV-T---YIARGNVALSVLMTAASTLSAVVMTPFLTAKLA 257 (416)
Q Consensus 196 ~~~~l~~~~~~glvl~~~~P~~~~s~i~-t---~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~ 257 (416)
+.+++|++.+. ++-.+.+=||.++.+- + +--+-|.+++++.+++-..++++..|++..++.
T Consensus 112 k~l~l~~~~~~-Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 112 SRLKLDKQMSI-LLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHhCCChhHHH-HHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 78998876542 3344444455555443 2 223456779999999999999999999987663
No 45
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=91.19 E-value=3.3 Score=39.57 Aligned_cols=95 Identities=13% Similarity=0.221 Sum_probs=67.5
Q ss_pred HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEeccccc--HHHHHHHHHHhcCCc-chHHHH
Q 014898 316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQN--SVLGVVLASQHFGSP-MAAVPC 392 (416)
Q Consensus 316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN--~~Lai~La~~~f~~p-~~alP~ 392 (416)
-++++++.+...++.++..+++=...+...+++++|++|.+++-.+++.= |. +++|+-++...-+.| .+++-+
T Consensus 78 PLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~P----kSvTTpiAm~vs~~iGGip~ltav~V 153 (230)
T COG1346 78 PLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLP----KSVTTPIAMEVSESIGGIPALTAVFV 153 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcc----cccccHHHHHHHHhcCCchHHHHHHH
Confidence 46777788877776677777777788999999999999999887776543 54 466666666665555 455556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 014898 393 AVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 393 ~v~~l~q~i~~s~la~~~~r~~ 414 (416)
++-+++-.+.|..+-.++|-|+
T Consensus 154 i~tGi~Gavlg~~llk~~~i~~ 175 (230)
T COG1346 154 ILTGILGAVLGPLLLKLLRIRH 175 (230)
T ss_pred HHHHHHHHHHHHHHHHHhccCc
Confidence 6667777777777766665443
No 46
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=91.01 E-value=3.6 Score=41.20 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=71.3
Q ss_pred HHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH
Q 014898 125 SLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHY 204 (416)
Q Consensus 125 ~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~ 204 (416)
++|.++|-..++.-+...+. ....+++..|.+|.+++++++.+.- +..+..+++ ..++.=.+.+.+.++++.+...
T Consensus 174 LiGmilGNld~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~-vv~~t~~~~~~i~rllg~~~~~ 249 (312)
T PRK12460 174 VLGMILGNLDPDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVL-VTIVTGFFNIFADRLVGGTGIA 249 (312)
T ss_pred HHHHHHhccchhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHH-HHHHHHHHHHHHHHHhCCChhH
Confidence 44555555444322222222 2236788889999999999997652 335555554 3445555677778888877654
Q ss_pred HHHHhHh--c-cCchhhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 205 AAGLILV--G-CCPGGTASNI-VTYIARGNVALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 205 ~~glvl~--~-~~P~~~~s~i-~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
. ..+- + ..=|++++.. ..-..+..++.++..+..+.+...+..|++..++
T Consensus 250 g--~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 250 G--AAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred H--HHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3332 1 1112221111 1333445566666666677777777777777665
No 47
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=90.17 E-value=30 Score=37.22 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHhhh--cCcc-chhhhHHHHHHHHHHHHHHhcccCChhHHHHhhh
Q 014898 124 VSLGCLLGLV--KPSS-FNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALA 171 (416)
Q Consensus 124 i~~~~l~gl~--~P~~-~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~ 171 (416)
++.|+++|.. .|.. .+. +......++.++|..|++++.+++++..+
T Consensus 29 il~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~ 77 (525)
T TIGR00831 29 ILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFR 77 (525)
T ss_pred HHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3557777742 2211 111 22345689999999999999999986543
No 48
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.14 E-value=22 Score=35.69 Aligned_cols=127 Identities=23% Similarity=0.386 Sum_probs=76.1
Q ss_pred HHHHHhhhcCccc--hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChh
Q 014898 126 LGCLLGLVKPSSF--NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSH 203 (416)
Q Consensus 126 ~~~l~gl~~P~~~--~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~ 203 (416)
.|+..|=.-|++. +.+.+.+....+-+.||++|+..+.+|+... |. .-+-+.+.|..+.-++++++.+..+.+-
T Consensus 39 AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLav-k~--iAipgAl~qia~at~lg~gL~~~lgws~- 114 (408)
T COG4651 39 AGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAV-KA--IAIPGALAQIALATLLGMGLSSLLGWSF- 114 (408)
T ss_pred HHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhH-HH--HhcchHHHHHHHHHHHHhHHHHHcCCCc-
Confidence 3444454456654 2344566778888999999999999999754 22 1244666788888999999999886432
Q ss_pred HHHHHhHhccCchhhHHHHH-HHHh-------CCChHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 014898 204 YAAGLILVGCCPGGTASNIV-TYIA-------RGNVALSV-LMTAASTLSAVVMTPFLTAKLA 257 (416)
Q Consensus 204 ~~~glvl~~~~P~~~~s~i~-t~~~-------~Gn~~ls~-~lt~istlls~~~~Pl~l~ll~ 257 (416)
-.|+++--|...+...... +.+- +|..+..- .+-=+..+++.+..|..-..+.
T Consensus 115 -~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g 176 (408)
T COG4651 115 -GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVLG 176 (408)
T ss_pred -ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhhc
Confidence 2344443344444333333 3332 33333322 1222455666677777777664
No 49
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=89.36 E-value=8.4 Score=42.31 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--HHHHHhHhccCchhhHHHHH
Q 014898 146 TIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSH--YAAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 146 ~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~--~~~glvl~~~~P~~~~s~i~ 223 (416)
..+.+++-+.++|+++++..+. .+|..++..++.-++.-++..++.++.++.+.. ...|+. .++.|-.+.+.
T Consensus 270 ~~lll~lFFi~vG~~id~~~l~---~~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~---L~~~Gef~~vl 343 (621)
T PRK03562 270 KGLLLGLFFIAVGMSIDFGTLL---ENPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVL---LGQGGEFAFVV 343 (621)
T ss_pred HHHHHHHHHHHhhhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHH---HhccccHHHHH
Confidence 3466788888999999987776 344554444555678888899999999987543 344543 34556666665
Q ss_pred HHHhC--C--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 224 TYIAR--G--NVALSVLMTAASTLSAVVMTPFLTAK 255 (416)
Q Consensus 224 t~~~~--G--n~~ls~~lt~istlls~~~~Pl~l~l 255 (416)
...+. | +.+....++ +..+++.+++|++..+
T Consensus 344 ~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~ 378 (621)
T PRK03562 344 FGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVL 378 (621)
T ss_pred HHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 43322 1 233333333 3557777888877654
No 50
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=89.36 E-value=28 Score=35.81 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=61.3
Q ss_pred HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898 151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYI 226 (416)
Q Consensus 151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~----~~l~~~~~~glvl~~~~P~~~~s~i~t~~ 226 (416)
+++++++|.-.++.-+ +.|||.++.|...|+.+.-.+..++... +|++...+..+-+.+.+=+.++-++-+.+
T Consensus 138 ~LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15477 138 LVIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 3566788877755554 5899999999999988765543333221 25677777777777777666554444444
Q ss_pred hCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898 227 ARGNVALSVLMTAAST-LSAVVMTPFLTAKLA 257 (416)
Q Consensus 227 ~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~ 257 (416)
+ -|.--+++...-|- -+-++.-|-+++++.
T Consensus 215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15477 215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 3 22222222222222 234555677788774
No 51
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=89.35 E-value=28 Score=35.80 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=61.2
Q ss_pred HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898 151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYI 226 (416)
Q Consensus 151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~----~~l~~~~~~glvl~~~~P~~~~s~i~t~~ 226 (416)
+++++++|.-.++.-+ +.|||.++.|...|+.+.-.+..++... +|++...+..+-+.+.+=+.++-++-+.+
T Consensus 138 ~LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15476 138 LVIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 3566788877755554 5899999999999988765543333221 25677777777777777665554444444
Q ss_pred hCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898 227 ARGNVALSVLMTAAST-LSAVVMTPFLTAKLA 257 (416)
Q Consensus 227 ~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~ 257 (416)
+ -|.--+++...-|- -+-++.-|-+++++.
T Consensus 215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15476 215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 3 22222222222222 234555677788774
No 52
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=89.20 E-value=29 Score=35.68 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=61.4
Q ss_pred HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh----cCCChhHHHHHhHhccCchhhHHHHHHHH
Q 014898 151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL----LNLPSHYAAGLILVGCCPGGTASNIVTYI 226 (416)
Q Consensus 151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~----~~l~~~~~~glvl~~~~P~~~~s~i~t~~ 226 (416)
+++++++|.-.++.-+ +.|||.++.|...|+.+.-.+..++... +|++...+..+-+.+.+=+.++-++-+.+
T Consensus 138 ~LIF~GIGAMtDFgpL---lanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskL 214 (433)
T PRK15475 138 LVIFMGVGAMTDFGPL---LANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKL 214 (433)
T ss_pred HHHHHhccHHhcchHH---hhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhh
Confidence 3566788877755554 5899999999999998765543333221 25677777777777777666554444444
Q ss_pred hCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898 227 ARGNVALSVLMTAAST-LSAVVMTPFLTAKLA 257 (416)
Q Consensus 227 ~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~ 257 (416)
+ -|.--+++...-|- -+-++.-|-+++++.
T Consensus 215 A-P~Llg~IaVAAYSYMaLVPiIQPpimklLT 245 (433)
T PRK15475 215 A-PELLGAIAVAAYSYMALVPLIQPPIMKALT 245 (433)
T ss_pred h-hHhHHHHHHHHHHHHHHHhcccchHHHhcc
Confidence 3 22222222222222 234556677788774
No 53
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=88.97 E-value=3.2 Score=38.71 Aligned_cols=132 Identities=16% Similarity=0.280 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHH---HhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 277 LLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASA---ILTSGPQVALAAFLLHASGFFFGYVLARML 353 (416)
Q Consensus 277 llPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~---i~~~~~~ill~~~ll~~~gf~lg~llarll 353 (416)
+..+++|.++-+..+...+.. ..........+++.++.-++.+++. +.+.+++.+...+.-.+.....|++.++.+
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll 80 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL 80 (191)
T ss_pred eeeHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777776654321111 2222334555666677777766433 444567777777777778888899999999
Q ss_pred CCCccceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 014898 354 GIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIFGSVLAGIWRR 412 (416)
Q Consensus 354 ~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l~q~i~~s~la~~~~r 412 (416)
+.+.+|+.+++ .|+-=-++.-++.+... +|....-.-+..++-=+.+-+..++..|
T Consensus 81 ~~~~~~~lav~--sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 81 GLSLKESLAVA--SGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred cCCHHHHHHHH--ccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777766 46655567666666655 4655544445566665666666666655
No 54
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=88.40 E-value=25 Score=35.90 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH-
Q 014898 145 WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV- 223 (416)
Q Consensus 145 l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~- 223 (416)
+...+-.++.-..|++.+...+++..|--....+..+..+.+.=..++.+.+..+.|... .+++.+|+|...-..
T Consensus 238 l~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~t----a~La~sPGGl~~ma~~ 313 (352)
T COG3180 238 LLAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNT----AYLATSPGGLDTMAAI 313 (352)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHHcCCCcHHHHHHH
Confidence 333444455667899999999987755444455555556667777788888888877643 467899999988865
Q ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 224 TYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA 257 (416)
Q Consensus 224 t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~ 257 (416)
+...+.|.++-.++.++=-++-.+..|.+.+.+.
T Consensus 314 A~~l~ad~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 314 AAALGADPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666669999999999888887788888877663
No 55
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.72 E-value=8.6 Score=36.76 Aligned_cols=87 Identities=24% Similarity=0.288 Sum_probs=70.8
Q ss_pred HHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH---HHHHhCCChHHHHHHHHHH
Q 014898 165 DLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI---VTYIARGNVALSVLMTAAS 241 (416)
Q Consensus 165 ~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i---~t~~~~Gn~~ls~~lt~is 241 (416)
+.+...|+++.++.+.+.--++-=..++.++++|+++++.... .+|=...+++ .++..||-.++.+..+.++
T Consensus 82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~S-----l~PkSvTTpiAm~vs~~iGGip~ltav~Vi~t 156 (230)
T COG1346 82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILS-----LLPKSVTTPIAMEVSESIGGIPALTAVFVILT 156 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH-----hcccccccHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3334447788899988888777788899999999999976544 4565554443 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 014898 242 TLSAVVMTPFLTAKL 256 (416)
Q Consensus 242 tlls~~~~Pl~l~ll 256 (416)
-++.-+.-|.++..+
T Consensus 157 Gi~Gavlg~~llk~~ 171 (230)
T COG1346 157 GILGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999887
No 56
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=87.41 E-value=38 Score=34.94 Aligned_cols=110 Identities=18% Similarity=0.078 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHH-HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhh
Q 014898 140 WVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKE-IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGT 218 (416)
Q Consensus 140 ~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~-l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~ 218 (416)
.+.+++.+.+++++++. .+.+++.+.-+|.-. ...+.+...+..+ +++.+.+..-.++.+...-.+.+. =.|.
T Consensus 55 ~v~~~~vPlai~LlLl~----~Dlr~i~~~g~~~l~~F~~~~~g~viG~~-va~~l~~~~l~~~~wk~ag~l~gs-yiGG 128 (378)
T PF05684_consen 55 FVWTYLVPLAIPLLLLS----ADLRRILRLGGRLLLAFLIGAVGTVIGAV-VAFLLFGGFLGPEGWKIAGMLAGS-YIGG 128 (378)
T ss_pred HHHHHHHHHHHHHHHHH----ccHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHhc-ccCc
Confidence 44456666777777764 577777655333211 2222222333333 333333332113333333333333 3333
Q ss_pred HHH--HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 219 ASN--IVTYIARGNVALSVLMTAASTLSAVVMTPFLTAK 255 (416)
Q Consensus 219 ~s~--i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~l 255 (416)
..| .+....+-+.++-..+.+.+++.+-+.+.+++.+
T Consensus 129 s~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 129 SVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred hhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 3588889999999999999999998888877654
No 57
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=87.12 E-value=10 Score=36.07 Aligned_cols=95 Identities=15% Similarity=0.251 Sum_probs=59.6
Q ss_pred HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898 316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC 392 (416)
Q Consensus 316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~ 392 (416)
-++++++.+......++....+=...+...++++++++|.|++...++ .-|+. ++|+.++...-++| .+++-+
T Consensus 65 PLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl----~pkSVTtpiAi~is~~iGG~~sLta~~V 140 (215)
T PF04172_consen 65 PLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSL----APKSVTTPIAIEISEQIGGIPSLTAVFV 140 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----HHHHhhHHHHHHHHHHhCChHHHHHHHH
Confidence 455666666665555555555556678888999999999988766653 44775 55555665665555 344445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 014898 393 AVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 393 ~v~~l~q~i~~s~la~~~~r~~ 414 (416)
++.+++-.+++-.+-.++|=|+
T Consensus 141 vitGi~Ga~~g~~llk~~~I~~ 162 (215)
T PF04172_consen 141 VITGILGAVLGPPLLKLLRIKD 162 (215)
T ss_pred HHHhhHHHHhHHHHHhHccccc
Confidence 5555555555555555555444
No 58
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=86.91 E-value=36 Score=34.42 Aligned_cols=101 Identities=21% Similarity=0.308 Sum_probs=59.5
Q ss_pred HHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChhHHHHHhHhccCchhhHHHHHH
Q 014898 151 TLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNL------PSHYAAGLILVGCCPGGTASNIVT 224 (416)
Q Consensus 151 ~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l------~~~~~~glvl~~~~P~~~~s~i~t 224 (416)
.++++++|.-.++. -.+.||+..+.+...|+.+.=. +..+..+|+ +...+..+-+.+.+=+.++-++-+
T Consensus 67 ~LIFlGIGAmtDFg---pllanP~~~llGaaAQ~GiF~t--~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~ 141 (354)
T TIGR01109 67 LLIFMGIGALTDFG---PLLANPRTLLLGAAAQFGIFAT--VFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSG 141 (354)
T ss_pred HHHHHhccHHhhhH---HHHhChHHHHHHHHHHhhHHHH--HHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHh
Confidence 45667888777555 4458999999999999887643 344455566 446666666666665555444433
Q ss_pred HHhCCChHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898 225 YIARGNVALSVLMTAAST-LSAVVMTPFLTAKLA 257 (416)
Q Consensus 225 ~~~~Gn~~ls~~lt~ist-lls~~~~Pl~l~ll~ 257 (416)
.++ -|.--+++...-|- -+-++.-|-+++++.
T Consensus 142 ~la-p~Llg~IaVAAYsYMaLvPiiqPpimklLt 174 (354)
T TIGR01109 142 KLA-PELLAAIAVAAYSYMALVPIIQPPIMKALT 174 (354)
T ss_pred hhh-hHHHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 333 22222222222222 234556677788774
No 59
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.24 E-value=25 Score=38.42 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH--HHHHhHhccCchhhHHHHH
Q 014898 146 TIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHY--AAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 146 ~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~--~~glvl~~~~P~~~~s~i~ 223 (416)
..+.+++-+..+|+++++..+. .++..++...+.-++.-++..++.++.++.+... ..|+. ..|.|-.+.+.
T Consensus 267 ~~lll~lFFi~vGm~id~~~l~---~~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~---L~~~Gef~~vl 340 (601)
T PRK03659 267 KGLLLGLFFISVGMALNLGVLY---THLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGV---LSQGGEFAFVL 340 (601)
T ss_pred HHHHHHHHHHHHhhhccHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH---HhccccHHHHH
Confidence 3567788888999999988776 3455555555556788888899999988876543 34433 46667777665
Q ss_pred HHHhC--CC-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 224 TYIAR--GN-VALSVLMTAASTLSAVVMTPFLTAK 255 (416)
Q Consensus 224 t~~~~--Gn-~~ls~~lt~istlls~~~~Pl~l~l 255 (416)
...+. |- .+-.....+...+++.+++|++..+
T Consensus 341 ~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~ 375 (601)
T PRK03659 341 FSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL 375 (601)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 11 1112222345556666777776654
No 60
>PRK10711 hypothetical protein; Provisional
Probab=85.23 E-value=17 Score=35.00 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898 316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC 392 (416)
Q Consensus 316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~ 392 (416)
-++++++.+......++....+=...+...+++++|++|.|++-..++. -|.. ++|+.++...-+.| .+++-+
T Consensus 76 PLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~----pkSVTtPIAm~is~~iGG~~sLta~~V 151 (231)
T PRK10711 76 PLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASIL----PKSVTTPIAMAVGGSIGGIPAISAVCV 151 (231)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh----hhhhhHHHHHHHHHHhCCcHHHHHHHH
Confidence 4567777777666666666666677889999999999999887666643 4765 55555565555554 455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 014898 393 AVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 393 ~v~~l~q~i~~s~la~~~~r~~ 414 (416)
++.+++-.+++-.+-.+.|=|+
T Consensus 152 iitGi~Ga~~g~~llk~~rI~~ 173 (231)
T PRK10711 152 IFVGILGAVFGHTLLNAMRIRT 173 (231)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 5566666666665555555444
No 61
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=85.17 E-value=14 Score=35.44 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=62.0
Q ss_pred HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898 316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC 392 (416)
Q Consensus 316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~ 392 (416)
-++++++.+....+.++..+++=...+...+++++|++|.|++-..++ .-|+. ++|+.++...-+.| .+++-+
T Consensus 81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl----~pKSVTtPIAm~is~~iGG~psLtA~~V 156 (232)
T PRK04288 81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASM----LPQAATTAIALPVSAGIGGIKEITSFAV 156 (232)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH----hhHhhhHHHHHHHHHHhCCcHHHHHHHH
Confidence 456677777766666666666667788889999999999998655553 34765 55556666665555 355555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 014898 393 AVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 393 ~v~~l~q~i~~s~la~~~~r~~ 414 (416)
++.+++-.+++-.+-.+.|=|+
T Consensus 157 iitGi~Gai~g~~llk~~~I~~ 178 (232)
T PRK04288 157 IFNAVIIYALGAKFLKLFRIKN 178 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC
Confidence 5556655555555555555444
No 62
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=84.95 E-value=9.8 Score=34.75 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHH-HhCCCccceeeeEEecccccHHHHHHHHHH
Q 014898 304 IAVGTVAILCGNAIAQSA-SAILTSGPQVALAAFLLHASGFFFGYVLAR-MLGIDVASCRTISIEVGMQNSVLGVVLASQ 381 (416)
Q Consensus 304 is~i~ll~ii~~~i~~~~-~~i~~~~~~ill~~~ll~~~gf~lg~llar-ll~~~~~~~~al~~~tg~qN~~Lai~La~~ 381 (416)
+...+.+..++...+++- +.+.+.++...+.+++.+..+..+++..+| .+|.|+.. +...-+|.++.+-++.-|..
T Consensus 58 ~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~--~~G~~aGa~T~tp~L~~A~~ 135 (169)
T PF06826_consen 58 LGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKLNPGI--AAGILAGALTSTPALAAAQE 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHccccCcHHHHHHHH
Confidence 344444444554444432 334556788888899999999999999998 89998653 33334666655555555544
Q ss_pred h
Q 014898 382 H 382 (416)
Q Consensus 382 ~ 382 (416)
.
T Consensus 136 ~ 136 (169)
T PF06826_consen 136 A 136 (169)
T ss_pred h
Confidence 4
No 63
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=84.39 E-value=22 Score=34.09 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=58.4
Q ss_pred HHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH--HHHHHHHHHhcCCc-chHHHH
Q 014898 316 AIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS--VLGVVLASQHFGSP-MAAVPC 392 (416)
Q Consensus 316 ~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~--~Lai~La~~~f~~p-~~alP~ 392 (416)
-++++++.+......++..+++=...+...++++++++|.+++-..+ ..-|+. ++|+.++...-++| .+++-+
T Consensus 75 PLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~S----l~pkSvTtpiAm~vs~~iGG~~sLta~~v 150 (226)
T TIGR00659 75 PLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIAS----LLPKSVTTPIAMHVSEMIGGIPAVTAVFV 150 (226)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH----hhhHHhhHHHHHHHHHHhCChHHHHHHHH
Confidence 45666766666555555555555667888999999999998765554 344775 55555665665555 344445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC
Q 014898 393 AVSSVCHSIFGSVLAGIWRRST 414 (416)
Q Consensus 393 ~v~~l~q~i~~s~la~~~~r~~ 414 (416)
++.+++-.+++..+-.++|-|+
T Consensus 151 vitGi~Ga~~g~~ll~~~~i~~ 172 (226)
T TIGR00659 151 ILTGLLGTVFGPMVLRYFRVKN 172 (226)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 5555555555555544544443
No 64
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=81.33 E-value=8.4 Score=39.07 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred hHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-HHhCCCccceeeeEEecccccHHHHHHHH
Q 014898 320 SASAILTSGPQVALAAFLLHASGFFFGYVLA-RMLGIDVASCRTISIEVGMQNSVLGVVLA 379 (416)
Q Consensus 320 ~~~~i~~~~~~ill~~~ll~~~gf~lg~lla-rll~~~~~~~~al~~~tg~qN~~Lai~La 379 (416)
+-+.+.+.++..++..+......+.++++++ |++|+|++.+.-++-.++..=.+-.++.+
T Consensus 80 ~~~~i~~~G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a 140 (335)
T TIGR00698 80 TFPYIADVGPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIE 140 (335)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhc
Confidence 3455666677666666667777888889998 79999988777766655554433333333
No 65
>COG2855 Predicted membrane protein [Function unknown]
Probab=79.44 E-value=8.5 Score=38.89 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=37.7
Q ss_pred hhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEec
Q 014898 319 QSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEV 367 (416)
Q Consensus 319 ~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~t 367 (416)
-+.+.+.+.|...+..........+.++|+++|++|+|++...-++-.+
T Consensus 83 ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~a~Lia~Gs 131 (334)
T COG2855 83 LTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKLALLIAAGS 131 (334)
T ss_pred eeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccc
Confidence 3566777778777777777788899999999999999987665544333
No 66
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.67 E-value=75 Score=34.24 Aligned_cols=104 Identities=13% Similarity=0.158 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--hHHHHHhHhccCchhhHHHHHH
Q 014898 147 IIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPS--HYAAGLILVGCCPGGTASNIVT 224 (416)
Q Consensus 147 ~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~--~~~~glvl~~~~P~~~~s~i~t 224 (416)
...+|+.+...|+++++..+.+ ++..+...++..++.-++..+..++.++.+. ....|+.+ ++.|..+.+.+
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l---~~~Gef~lii~ 352 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASL---AQIGEFAFILA 352 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHH---hcccchHHHHH
Confidence 4567888889999999887763 3444444444566777777777788776543 34445444 44455555543
Q ss_pred HHh--CCCh-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 225 YIA--RGNV-ALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 225 ~~~--~Gn~-~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
..+ .|-. +-......+.++++.+.+|++....
T Consensus 353 ~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 353 GLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 332 2211 1222345555667777778766543
No 67
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=77.43 E-value=1.1e+02 Score=33.18 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhhc---Ccc-chhhh-HHHHHHHHHHHHHHhcccCChhHHHHhhhchHH-HHHHHHHHHHHHHHHHHHH
Q 014898 121 PIWVSLGCLLGLVK---PSS-FNWVQ-PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKE-IISGFVLQYSVMPISGFLV 194 (416)
Q Consensus 121 pl~i~~~~l~gl~~---P~~-~~~~~-~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~-l~~~l~~~~vl~Plla~~l 194 (416)
.+.+++|.++|... +.. ...+. +......+|.++|..|.+++.+++++.++.-.. ...|.+.+.++.-...+.+
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677776432 110 00111 234556899999999999999999977654222 2234445555555555544
Q ss_pred HHhcC-------CChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHH
Q 014898 195 SKLLN-------LPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSV 235 (416)
Q Consensus 195 ~~~~~-------l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~ 235 (416)
....+ +......|.++.+.=|.++.+. -+..+-+..+..
T Consensus 119 ~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai--~~~~~v~~~L~~ 164 (559)
T TIGR00840 119 CLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAV--FEEYHVNEKLYI 164 (559)
T ss_pred HhhccccccCCCHHHHHHHhHHhcCCchHHHHHH--HHhcCCCcchhh
Confidence 43222 2234456666666666666543 333444444443
No 68
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=77.31 E-value=6 Score=39.98 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=26.8
Q ss_pred HHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 014898 149 GLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPS 202 (416)
Q Consensus 149 ~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~ 202 (416)
+++...+..|.++++.++... .+..+++++. +.++.+.+.+.+.++++.++
T Consensus 204 lLp~~~~~lG~~l~lq~i~~~--G~~GilL~~~-~~~~t~~~~~~~~Rl~~~~~ 254 (326)
T PRK05274 204 LIPFFAFALGNGIDLGTIITA--GLSGILLGVA-VVAVTGIPLYLADRLIGGGN 254 (326)
T ss_pred EHHHHHHHHhcceeHhHHHhc--CCcchhhhhh-HhhccchhhHhHhheeecCC
Confidence 455666666777766666533 1223333332 34445555666666664333
No 69
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=73.81 E-value=70 Score=36.57 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHhhhcCccc------hhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 014898 129 LLGLVKPSSF------NWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPS 202 (416)
Q Consensus 129 l~gl~~P~~~------~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~ 202 (416)
+.|+.+|+.- ..+.+....+.+|+-+..+|+++++..+... ..+.......+..++.--+.+++.++.++.+.
T Consensus 301 laGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~-~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~ 379 (832)
T PLN03159 301 VFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGP-ATWGLLVLVIIMASAGKIMGTIIIAFFYTMPF 379 (832)
T ss_pred HHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4577888631 1222334556788888899999998776421 11111112222233444445666667777655
Q ss_pred hHH--HHHhHhccCchhhHHHHHHH--HhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 203 HYA--AGLILVGCCPGGTASNIVTY--IARGN--VALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 203 ~~~--~glvl~~~~P~~~~s~i~t~--~~~Gn--~~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
..+ .|+.+ .+ -|....+... ...|- .+.-..++....+.+.++.|++..++
T Consensus 380 ~eal~lG~lm--~~-kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 380 REGITLGFLM--NT-KGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred HHHHHHHHHH--hc-ccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 443 44443 22 2333333322 12221 22222333344456667777766554
No 70
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=72.16 E-value=0.31 Score=49.38 Aligned_cols=122 Identities=19% Similarity=0.279 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHH--HHHHHH---hcC--CChhHHHHHhHhccCc
Q 014898 143 PKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPIS--GFLVSK---LLN--LPSHYAAGLILVGCCP 215 (416)
Q Consensus 143 ~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pll--a~~l~~---~~~--l~~~~~~glvl~~~~P 215 (416)
+.+....+.+.||..|++++.+++++..++. ...++. . ...|.. ++.+.. ..+ .......|.++....|
T Consensus 49 ~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 49 ELLAEIGLAFLLFEAGLELDIKELRRNWRRA--LALGLV-G-FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp -SSHHHHS--SSHHHHTTGGGG-----------------------------------------------TTHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccc--cccccc-e-eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 4567788999999999999999999776552 222222 2 223333 333332 233 3334445666655656
Q ss_pred hhhHHHHH-HHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHH
Q 014898 216 GGTASNIV-TYIARGNV-ALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLF 269 (416)
Q Consensus 216 ~~~~s~i~-t~~~~Gn~-~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~ 269 (416)
.......- ....+++. .+......++.+.+.+...+..... ++....+.....
T Consensus 125 ~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~ 179 (380)
T PF00999_consen 125 AIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLL 179 (380)
T ss_dssp HHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------------------
T ss_pred cchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchh
Confidence 55555442 22223333 3445666777777777777766665 333334443333
No 71
>PRK04972 putative transporter; Provisional
Probab=71.28 E-value=24 Score=38.28 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=48.9
Q ss_pred HHHhhhchHHHHHHHHHHHHHHHHHHHHH-HHhCCCccceeeeEEecccccHHHHHHHHHHhcCC--cc--hHHHHHHHH
Q 014898 322 SAILTSGPQVALAAFLLHASGFFFGYVLA-RMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGS--PM--AAVPCAVSS 396 (416)
Q Consensus 322 ~~i~~~~~~ill~~~ll~~~gf~lg~lla-rll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~--p~--~alP~~v~~ 396 (416)
+.+.+.++.+.+.+++.......++++++ +.+|++.. +++..-+|.+..+-++.-+...-++ |. ++..-.+..
T Consensus 466 ~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~~~~~~~gYa~~yp~~~ 543 (558)
T PRK04972 466 NGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDTARSNIPALGYAGTYAIAN 543 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhhcCCCCcccccHhHHHHHH
Confidence 34455677877777777777777888888 56899876 3444446766554444444433333 32 222222334
Q ss_pred HHHHHHHHHHHHH
Q 014898 397 VCHSIFGSVLAGI 409 (416)
Q Consensus 397 l~q~i~~s~la~~ 409 (416)
++..+.+-++..+
T Consensus 544 il~~l~~~~iv~~ 556 (558)
T PRK04972 544 VLLTLAGTLIVIV 556 (558)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 72
>PRK04972 putative transporter; Provisional
Probab=69.37 E-value=1.6e+02 Score=32.01 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcccCChhHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH
Q 014898 146 TIIGLTLTMLGMGMTLTLDDLRGALAM-PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 146 ~~~~l~l~m~~~Gl~L~~~~l~~~~~~-p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~ 223 (416)
..+.+.+-++++|++--..=+....++ .+....+.+ -.++.-++++.++++|++++..+.|++--+..-++..+..-
T Consensus 62 ~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~a~ 139 (558)
T PRK04972 62 LNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALV-MVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAG 139 (558)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHHHH
Confidence 445666667788888776655544332 233333333 33444456777889999999999998877766555555544
No 73
>PRK03818 putative transporter; Validated
Probab=67.41 E-value=30 Score=37.48 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhHHHH----HHHhCcCchHHHHHHHHHHHHHHHhhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 014898 277 LLPVLGGAFLNQYFHSLV----KFVSPLMPPIAVGTVAILCGNAIAQSA-SAILTSGPQVALAAFLLHASGFFFGYVLAR 351 (416)
Q Consensus 277 llPl~lG~llr~~~p~~~----~~i~~~l~~is~i~ll~ii~~~i~~~~-~~i~~~~~~ill~~~ll~~~gf~lg~llar 351 (416)
--+++.|+++-++.+++. +.....++-+...+.+..++...+++. +.+...++...+.+++.++.+..+++.+.+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHK 113 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666665433221 111112333444444444444444432 334445778888888888889999999999
Q ss_pred HhCCCccceeeeEEecccccH--HHHHHH
Q 014898 352 MLGIDVASCRTISIEVGMQNS--VLGVVL 378 (416)
Q Consensus 352 ll~~~~~~~~al~~~tg~qN~--~Lai~L 378 (416)
.+|+|... +...-+|.... +++.+.
T Consensus 114 ~~~~~~~~--~~G~~aGa~T~tp~l~aa~ 140 (552)
T PRK03818 114 LFGIPLPV--MLGIFSGAVTNTPALGAGQ 140 (552)
T ss_pred HhCCCHHH--HHHHhhccccccHHHHHHH
Confidence 99998763 33333555443 555544
No 74
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=65.36 E-value=1.6e+02 Score=29.82 Aligned_cols=176 Identities=16% Similarity=0.188 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhc-CCChhHH-HHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH------H
Q 014898 183 QYSVMPISGFLVSKLL-NLPSHYA-AGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLT------A 254 (416)
Q Consensus 183 ~~vl~Plla~~l~~~~-~l~~~~~-~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l------~ 254 (416)
-=+++|+.+|.+.+-+ +++..-+ ...--.+++-..+.....+.+..-+.+..--++..-.+ .=.|-++ .
T Consensus 63 lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~al---ME~PAIival~L~~ 139 (327)
T PF05982_consen 63 LGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLAL---MESPAIIVALLLAR 139 (327)
T ss_pred HHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHH---HhhhHHHHHHHHHH
Confidence 3567999999988864 5665443 33444556666666666666666666655555443322 2333322 1
Q ss_pred HhcCce-----------------eeechHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHhCcCchH--HHHHHH
Q 014898 255 KLAGQY-----------------VAVDAMGLFMSTL-----QVVLLPVLGGAFLNQYFHSLVKFVSPLMPPI--AVGTVA 310 (416)
Q Consensus 255 ll~g~~-----------------v~i~~~~l~~~ll-----~~vllPl~lG~llr~~~p~~~~~i~~~l~~i--s~i~ll 310 (416)
+..++. -+.+..+++...+ ..++--+++|.+.+. +-.+.+++....+ +++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~---~g~~~i~pf~~~lF~G~L~lF 216 (327)
T PF05982_consen 140 LFSRKQAAGATASSTRVGAGSGHEGISWGELLHESLTNKSVVLLLGGLIIGFLAGP---EGVESIKPFFVDLFKGVLCLF 216 (327)
T ss_pred HHhccccccccCCccccccccccccccHHHHHHHHHcCchHHHHHHHHHHhheeCc---cchhhccchhhccHHHHHHHH
Confidence 221111 1234566665432 234444555555432 2233455554332 233333
Q ss_pred HH-HHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeE
Q 014898 311 IL-CGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTIS 364 (416)
Q Consensus 311 ~i-i~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~ 364 (416)
++ .+...++.-+.+...++..+..+++++..+-.+|..+++++|++..+..-++
T Consensus 217 LLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~~lla 271 (327)
T PF05982_consen 217 LLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSPGGAVLLA 271 (327)
T ss_pred HHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 33 3444455556666778888889999999999999999999999887665433
No 75
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=65.27 E-value=2.1e+02 Score=31.21 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcccCChhHHHHhhhc--hHHHHHHHHHHHHHHH-HHHHHHH-HhcCCChhHHHHHhHhccCchhhHHHHH
Q 014898 148 IGLTLTMLGMGMTLTLDDLRGALAM--PKEIISGFVLQYSVMP-ISGFLVS-KLLNLPSHYAAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 148 ~~l~l~m~~~Gl~L~~~~l~~~~~~--p~~l~~~l~~~~vl~P-lla~~l~-~~~~l~~~~~~glvl~~~~P~~~~s~i~ 223 (416)
+.+.+-+.++|++--.+=+. .+++ .+....+.+ ..+.| ++++.++ +++++++....|.+--+-.-++..+..
T Consensus 452 ~GL~lFla~vG~~aG~~f~~-~l~~~G~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a- 527 (562)
T TIGR03802 452 LGLALFIAVVGLSAGPQAVT-AIKEMGLTLFLLGIV--VTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGAV- 527 (562)
T ss_pred HhHHHHHHHHHHhhhHHHHH-HHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHH-
Confidence 33444445677765554444 4444 222333333 34445 6677788 688999999999855444333333333
Q ss_pred HHHhCCC-hHHHHHHH-HHHHHHHHHHHHHHH
Q 014898 224 TYIARGN-VALSVLMT-AASTLSAVVMTPFLT 253 (416)
Q Consensus 224 t~~~~Gn-~~ls~~lt-~istlls~~~~Pl~l 253 (416)
....+-| ...+.+.+ .+++++=++..|+++
T Consensus 528 ~~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv 559 (562)
T TIGR03802 528 LERAGSSVPALGYTITYALGNVLLTLLGPLIV 559 (562)
T ss_pred HHhcCCCCcccchHhHHHHHHHHHHHHHHHHH
Confidence 3333333 22222222 345554455555444
No 76
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=65.01 E-value=1.1e+02 Score=33.21 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHH
Q 014898 145 WTIIGLTLTMLGMGMTLTLDDLRGALAM-PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNI 222 (416)
Q Consensus 145 l~~~~l~l~m~~~Gl~L~~~~l~~~~~~-p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i 222 (416)
+....+.+-+|++|++--+.=++...|+ .+..+.+++ -.+..=+++++++++|++++..+.|++--+..-++.....
T Consensus 59 v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~-~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA 136 (562)
T TIGR03802 59 VKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALV-FAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTA 136 (562)
T ss_pred HHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHH
Confidence 4456677778899999888777655443 344444443 3455566788899999999999999987776655554443
No 77
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=64.61 E-value=50 Score=33.11 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcccCChhHHH
Q 014898 148 IGLTLTMLGMGMTLTLDDLR 167 (416)
Q Consensus 148 ~~l~l~m~~~Gl~L~~~~l~ 167 (416)
..+|+.-|++|.+++++++.
T Consensus 201 ~lIpFf~FaLGaginl~~i~ 220 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVII 220 (314)
T ss_pred eeeehhhhhhcCCCCHHHHH
Confidence 34455555555555555543
No 78
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=63.58 E-value=39 Score=33.90 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 014898 275 VVLLPVLGGAFLNQ 288 (416)
Q Consensus 275 ~vllPl~lG~llr~ 288 (416)
.++.|++.++..||
T Consensus 299 ail~P~lt~~~~kr 312 (314)
T PF03812_consen 299 AILTPILTSWWAKR 312 (314)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555544
No 79
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=58.75 E-value=1.4e+02 Score=27.10 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=60.5
Q ss_pred HHHHHHhhh-------cCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhch--HHHHHHHHHHHHHHHHHHHHHH
Q 014898 125 SLGCLLGLV-------KPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMP--KEIISGFVLQYSVMPISGFLVS 195 (416)
Q Consensus 125 ~~~~l~gl~-------~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p--~~l~~~l~~~~vl~Plla~~l~ 195 (416)
+.++++|.. .|....+. +....+.+-++++|++--.+=+ +.+|+. +....+.+ -.++..++++.++
T Consensus 31 ~vgL~~G~~~~~~~~~~~~~~~~~---l~~~GL~lFl~~VGl~aG~~F~-~~l~~~G~~~~~~~~~-i~~~~~~~~~~~~ 105 (169)
T PF06826_consen 31 FVGLILGALGRTGPIFLPISAPSF---LRQLGLALFLAAVGLSAGPGFF-SSLKRGGLKLLLLGVI-ITLVPLLIALVIG 105 (169)
T ss_pred HHHHHHHHhhhccCCCCCccHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555555 34444333 3445566667788887766444 445543 33444443 3555666688888
Q ss_pred H-hcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChH
Q 014898 196 K-LLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVA 232 (416)
Q Consensus 196 ~-~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ 232 (416)
+ ++++++....|.+-=+-.-++..+..--...+.|.+
T Consensus 106 ~~~~~l~~~~~~G~~aGa~T~tp~L~~A~~~~~~~~~~ 143 (169)
T PF06826_consen 106 RYLFKLNPGIAAGILAGALTSTPALAAAQEAISDSGIP 143 (169)
T ss_pred HHHcCCCHHHHHHHHHccccCcHHHHHHHHhhhcCCCc
Confidence 8 889999999998776655555555444333444433
No 80
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=56.43 E-value=2.4e+02 Score=29.00 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=22.8
Q ss_pred eechHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014898 262 AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSL 293 (416)
Q Consensus 262 ~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~ 293 (416)
.+|...++.+++-.+++-++++..++++..+.
T Consensus 163 g~~~~~il~NL~Piii~~illa~GL~~~p~~m 194 (372)
T PRK15086 163 GFDFALILRNLIPVIIFAILLALGLKFIPEKM 194 (372)
T ss_pred hCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46666777787777888888888887554443
No 81
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=56.32 E-value=58 Score=32.51 Aligned_cols=100 Identities=22% Similarity=0.331 Sum_probs=58.8
Q ss_pred HHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCCh
Q 014898 152 LTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNV 231 (416)
Q Consensus 152 l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~ 231 (416)
++++++|.-.++..+ +.+||-++.|-..|+.+.- ++..+..++..+..+..+-+.+..=+.++-++-+.++ -|.
T Consensus 89 lIFmGvGAmTDFgpl---lanPktllLGaAAQ~GIF~--t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~LA-P~L 162 (375)
T COG1883 89 LIFMGVGAMTDFGPL---LANPKTLLLGAAAQFGIFA--TVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKLA-PEL 162 (375)
T ss_pred HHHhccchhcccchh---hcCcHHHHhhhHHHhchHH--HHHHHHHhCCCHhhhhheeeeccCCCCceEEeccccC-HHH
Confidence 456688877755555 4899999999999998754 4445556677777777777777665555444333322 122
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhc
Q 014898 232 ALSVLMTAAST-LSAVVMTPFLTAKLA 257 (416)
Q Consensus 232 ~ls~~lt~ist-lls~~~~Pl~l~ll~ 257 (416)
--+++...-|- -+-++.=|..+..+.
T Consensus 163 l~~iAvAAYSYMALVPiIQPpimkaLT 189 (375)
T COG1883 163 LGAIAVAAYSYMALVPIIQPPIMKALT 189 (375)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHhc
Confidence 11222222221 233445577777764
No 82
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=53.35 E-value=2e+02 Score=27.10 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCc
Q 014898 231 VALSVLMTAASTLSAVVMTPFLTAKLAG--------QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMP 302 (416)
Q Consensus 231 ~~ls~~lt~istlls~~~~Pl~l~ll~g--------~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~ 302 (416)
.....+.+.+-++-+++.-++.-.++.. ...+++...+...+...=.+=...-+++|++.|+..+.+...++
T Consensus 39 ~gmGlavt~Vl~~s~~~~~~l~~~il~p~~~~~~~~~~~~l~~lr~~vfIlvIA~~V~~ve~~l~~~~p~Ly~~LGiflp 118 (202)
T PRK02830 39 FGLGIAVIVVLTITVPVNNLIYNYVLKPGALAWAGVPGVDLSFLGFITFIGVIAALVQILEMVLDKYFPALYNALGIFLP 118 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3455555666666665555554444421 12333443443333333333345778899999999999888888
Q ss_pred hHHHHHHH
Q 014898 303 PIAVGTVA 310 (416)
Q Consensus 303 ~is~i~ll 310 (416)
.+..=+.+
T Consensus 119 LI~~NCaV 126 (202)
T PRK02830 119 LITVNCAI 126 (202)
T ss_pred HHHHHHHH
Confidence 87654433
No 83
>PRK03818 putative transporter; Validated
Probab=52.18 E-value=3.4e+02 Score=29.45 Aligned_cols=78 Identities=10% Similarity=0.054 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH
Q 014898 145 WTIIGLTLTMLGMGMTLTLDDLRGALAM-PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 145 l~~~~l~l~m~~~Gl~L~~~~l~~~~~~-p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~ 223 (416)
+-.+.+.+-++++|++--..=+....++ .+....+++ -.++..++++.+.+++++++....|++--+..-++.....-
T Consensus 62 ~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~aa~ 140 (552)
T PRK03818 62 IQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVL-IVILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALGAGQ 140 (552)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHHHHH
Confidence 3445666777788888777666544332 233344443 34444555777888899999999998776655555554444
No 84
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=51.08 E-value=2.1e+02 Score=26.61 Aligned_cols=127 Identities=21% Similarity=0.272 Sum_probs=67.3
Q ss_pred HHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhH--HHHhh-hchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 014898 123 WVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDD--LRGAL-AMPKEIISGFVLQYSVMPISGFLVSKLLN 199 (416)
Q Consensus 123 ~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~--l~~~~-~~p~~l~~~l~~~~vl~Plla~~l~~~~~ 199 (416)
.+++|+++|+......... +......+.+++|.+|+++..++ +++.. .++|.+.+.+. ..+-.=+.++....+++
T Consensus 4 ~li~Gi~lG~~~~~~~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~-tIlGSllgg~l~~~ll~ 81 (191)
T PF03956_consen 4 ALILGILLGYFLRPPFSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLA-TILGSLLGGLLASLLLG 81 (191)
T ss_pred eHHHHHHHHHHhccccccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 4567888888877664333 44566778899999999987653 33332 22344333332 23333334455555555
Q ss_pred CChhHHHHHhHhccCchhhHHHHH-HHHhCCChHHHHHHHHHHH----HHHHHHHHHHHHHh
Q 014898 200 LPSHYAAGLILVGCCPGGTASNIV-TYIARGNVALSVLMTAAST----LSAVVMTPFLTAKL 256 (416)
Q Consensus 200 l~~~~~~glvl~~~~P~~~~s~i~-t~~~~Gn~~ls~~lt~ist----lls~~~~Pl~l~ll 256 (416)
.+. ..++.+-+..-==..|.++ +... +.++.... .+++ +++.+.+|++.+..
T Consensus 82 ~~~--~~~lav~sG~GwYSlsg~~i~~~~--~~~~G~ia-fl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 82 LSL--KESLAVASGFGWYSLSGVLITQLY--GPELGTIA-FLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred CCH--HHHHHHHccCcHHHhHHHHHHhhh--CHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 543 3333333332222233333 3333 33333322 2333 57889999999844
No 85
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=49.89 E-value=2.5e+02 Score=27.24 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------cC--ceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcC
Q 014898 232 ALSVLMTAASTLSAVVMTPFLTAKL--------AG--QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLM 301 (416)
Q Consensus 232 ~ls~~lt~istlls~~~~Pl~l~ll--------~g--~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l 301 (416)
.+.++.+.+.++-+++.-++.-.++ .. +.++.+...+...++.+=.+=..+-++++++.|+..+.+...+
T Consensus 47 gMGlAvtfVl~~S~~i~~~l~~~Il~p~a~~~~~~~~~~~~l~~Lr~ivfIlvIA~~Vq~vem~L~a~~p~Ly~aLGifL 126 (244)
T PRK01061 47 GLGMSVALVLTVTGSINWFVHAFITGPGALTWLSPALANVNLSFLELIIFIVVIAAFTQILELLLEKVSRNLYLSLGIFL 126 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence 3445555555555555555433322 11 1123333343333332223334567889999999988888888
Q ss_pred chHHHHHH
Q 014898 302 PPIAVGTV 309 (416)
Q Consensus 302 ~~is~i~l 309 (416)
+.+..=|.
T Consensus 127 PLIttNCa 134 (244)
T PRK01061 127 PLIAVNCA 134 (244)
T ss_pred hHHHHHHH
Confidence 87765433
No 86
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=47.35 E-value=3.4e+02 Score=28.02 Aligned_cols=97 Identities=24% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHhhhcCccch---hhhH---HHHH-HHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014898 129 LLGLVKPSSFN---WVQP---KWTI-IGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLP 201 (416)
Q Consensus 129 l~gl~~P~~~~---~~~~---~l~~-~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~ 201 (416)
+.|+.+++... ++.+ .... ..+|+-+...|++++++.+... +.........-.+..=+..+..++.++.+
T Consensus 251 laGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~---~~~~l~~~~~~i~~K~~~~~~~~~~~g~~ 327 (397)
T COG0475 251 LAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN---LLLILLLVALAILGKILGAYLAARLLGFS 327 (397)
T ss_pred HHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 44677776432 2322 2344 7788888899999999888743 33323333333344444566677777754
Q ss_pred hhHHHHHhHhccCchhhHHHHHHHHhCC
Q 014898 202 SHYAAGLILVGCCPGGTASNIVTYIARG 229 (416)
Q Consensus 202 ~~~~~glvl~~~~P~~~~s~i~t~~~~G 229 (416)
...+.+.-.. -.+.+..+.+.+....|
T Consensus 328 ~~~~~~~g~~-~~~~ge~~~v~~~~~~~ 354 (397)
T COG0475 328 KRLALGIGLL-LRQGGEFAFVLAGIALG 354 (397)
T ss_pred HHHHHHHHhh-hhhhhHHHHHHHHhccc
Confidence 4333333222 23344455555555555
No 87
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=45.81 E-value=2.1e+02 Score=28.86 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHH
Q 014898 179 GFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAAST 242 (416)
Q Consensus 179 ~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~ist 242 (416)
..++.+++.-.++|.+++.++++.+....+.+...+=-...+..++...=+|.+.+....+...
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~ 314 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGP 314 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhh
Confidence 4446677888889999999999888888888887776666666665544444454444444333
No 88
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=42.46 E-value=88 Score=28.07 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhH-HHHhhhc-hHHHHH-HHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHH
Q 014898 304 IAVGTVAILCGNAIAQSA-SAILTSG-PQVALA-AFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLAS 380 (416)
Q Consensus 304 is~i~ll~ii~~~i~~~~-~~i~~~~-~~ill~-~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~ 380 (416)
+...+.+..++...+++- +.+.+.+ +..... .++.........+...+.+|+|.. .+...-+|.+..+-++.-+.
T Consensus 58 ~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~G~~aGa~T~tpaL~aa~ 135 (154)
T TIGR01625 58 FGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYA--LTAGMLAGATTNTPALDAAN 135 (154)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHhccccChHHHHHHH
Confidence 333333444444444432 2333333 233323 333333344444444567899875 33344467666555554444
Q ss_pred Hh
Q 014898 381 QH 382 (416)
Q Consensus 381 ~~ 382 (416)
..
T Consensus 136 ~~ 137 (154)
T TIGR01625 136 DT 137 (154)
T ss_pred HH
Confidence 43
No 89
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=41.09 E-value=3e+02 Score=25.64 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=47.9
Q ss_pred HhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 210 LVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289 (416)
Q Consensus 210 l~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll~~vllPl~lG~llr~~ 289 (416)
.++.||.-..|. ..+.-..++.+.+.+.++-++..-++.-.+. +..+.+.......++..-.+=...-++++++
T Consensus 21 ~LG~Cp~l~vs~----~~~~a~gmGlav~~V~~~s~~~~~~i~~~il--~p~~l~~lr~~~filvIA~~V~~ve~~l~~~ 94 (190)
T TIGR01943 21 FLGLCPFLGVSK----KLETAIGMGLAVTFVMTLASVISWLVYNFIL--DPLNLEFLRTIVFILVIAALVQFVEMVVRKT 94 (190)
T ss_pred HHhcCchhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566533332 2233334445555555554444444333222 1122333333332222222334467789999
Q ss_pred hHHHHHHHhCcCchHHHHHHH
Q 014898 290 FHSLVKFVSPLMPPIAVGTVA 310 (416)
Q Consensus 290 ~p~~~~~i~~~l~~is~i~ll 310 (416)
.|+..+.+...++.+..=+.+
T Consensus 95 ~p~ly~~LGiflpLI~tNCaV 115 (190)
T TIGR01943 95 SPDLYRALGIFLPLITTNCAV 115 (190)
T ss_pred ChHHHHHHhhhhhHHHHHHHH
Confidence 999989888888877654433
No 90
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=40.99 E-value=47 Score=29.60 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccee
Q 014898 331 VALAAFLLHASGFFFGYVLARMLGIDVASCR 361 (416)
Q Consensus 331 ill~~~ll~~~gf~lg~llarll~~~~~~~~ 361 (416)
.+...+.....++..+|++.|..+.|..+..
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~ 109 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAF 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3445566667788999999999998886654
No 91
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=40.56 E-value=3.4e+02 Score=29.00 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=24.0
Q ss_pred HHHHHHH-HHHHHHhcCCChhHHHHHhHhccCch
Q 014898 184 YSVMPIS-GFLVSKLLNLPSHYAAGLILVGCCPG 216 (416)
Q Consensus 184 ~vl~Pll-a~~l~~~~~l~~~~~~glvl~~~~P~ 216 (416)
|-.+|++ +|-.++-|+.+|.+...+-...+.|.
T Consensus 158 FyFLPi~v~~saak~f~~np~lg~~ig~~L~~P~ 191 (472)
T PRK09796 158 FFFLPLMVAASAAIKFKTNMSLAIAIAGVLVHPS 191 (472)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCcc
Confidence 5556665 78899999988887766666666664
No 92
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=40.42 E-value=4.3e+02 Score=27.23 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhcCccchhh--hHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014898 121 PIWVSLGCLLGLVKPSSFNWV--QPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLL 198 (416)
Q Consensus 121 pl~i~~~~l~gl~~P~~~~~~--~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~ 198 (416)
++.+...+.+...+|...+.. .+.+....+-+.+-.+|.+.+.+++.+ .|..++.++ +...+.=++.++++++|
T Consensus 242 ~il~~tt~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~~~-i~l~iH~~l~l~~~kl~ 317 (378)
T PF05684_consen 242 LILTVTTLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLFGF-IILAIHLLLMLILGKLF 317 (378)
T ss_pred HHHHHHHHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 333344444555667655432 233555555555568899998888764 555555554 35777777888999999
Q ss_pred CCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHH
Q 014898 199 NLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAA 240 (416)
Q Consensus 199 ~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~i 240 (416)
++|-+. ..+--.++.=+++.+..++.-.+ .++..-.+.+
T Consensus 318 k~~l~~-~~vAS~AnIGGpaTA~a~A~a~~--~~Lv~pgvL~ 356 (378)
T PF05684_consen 318 KIDLFE-LLVASNANIGGPATAPAVAAAKG--PSLVPPGVLM 356 (378)
T ss_pred CCCHHH-HHHHhhcccCCcchHHHHHHhcC--CccHHHHHHH
Confidence 876543 34445556655556666666555 5544443333
No 93
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=38.96 E-value=3.4e+02 Score=25.55 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC----ceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHH
Q 014898 231 VALSVLMTAASTLSAVVMTPFLTAKLAG----QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAV 306 (416)
Q Consensus 231 ~~ls~~lt~istlls~~~~Pl~l~ll~g----~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~ 306 (416)
.....+.+.+-++-++..-.+.-.++.. +.+++.+......++..=.+=-..-+++|++.|+..+.+...++.+..
T Consensus 40 lgmGlAvtfVl~~s~~~~~~i~~~il~p~~l~~~~~i~~Lr~~~fIlvIA~~V~~ve~~l~a~~p~Ly~~LGiflpLI~t 119 (199)
T PRK12456 40 FGLGLTVTALLAIATPLNNLIYTYILRENALIDGVDLSFLDFITFIGVLAALVQILEMVLERFLPSLHHTLGAFLPLLTI 119 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 3445555555555555555544443321 123333333333222222222456778999999998888888887654
Q ss_pred HH
Q 014898 307 GT 308 (416)
Q Consensus 307 i~ 308 (416)
=+
T Consensus 120 NC 121 (199)
T PRK12456 120 HC 121 (199)
T ss_pred HH
Confidence 33
No 94
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=38.33 E-value=3.9e+02 Score=26.13 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHHH
Q 014898 177 ISGFVLQYSVMPIS--GFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGN-----VALSVLMTAASTLSAVVMT 249 (416)
Q Consensus 177 ~~~l~~~~vl~Pll--a~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn-----~~ls~~lt~istlls~~~~ 249 (416)
..++++ ...+|.. .+..++..+-|..++.++...+.+=+....+.+.....|+ .+.....+..+ +..+.+
T Consensus 69 ~~glvL-~~~~P~~~~s~v~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~--~~~v~v 145 (286)
T TIGR00841 69 AVGVLI-VGCCPGGTASNVFTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS--LVAVLI 145 (286)
T ss_pred HHHHHh-eeeCCCchHHHHHHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH--HHHHHH
Confidence 344432 4455544 3446667788888888888887776666666664444332 22333334444 677888
Q ss_pred HHHHHHhc
Q 014898 250 PFLTAKLA 257 (416)
Q Consensus 250 Pl~l~ll~ 257 (416)
|+.+.++.
T Consensus 146 Pl~lG~~~ 153 (286)
T TIGR00841 146 PVSIGMLV 153 (286)
T ss_pred HHHHHHHH
Confidence 98887664
No 95
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=38.20 E-value=3.5e+02 Score=25.49 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC--------ceeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCc
Q 014898 231 VALSVLMTAASTLSAVVMTPFLTAKLAG--------QYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMP 302 (416)
Q Consensus 231 ~~ls~~lt~istlls~~~~Pl~l~ll~g--------~~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~ 302 (416)
..+..+.+.+-++-+++.-++.-.++.. +.++..+..+...++..=.+=...-+++|++.|+..+.+...++
T Consensus 38 ~gmGlAvtfV~~~s~~~~~~i~~~il~p~~~~~~~~~~~~l~~Lr~~~fIlvIA~~V~~vem~l~a~~p~ly~~LGiflp 117 (200)
T TIGR01940 38 FGLGVAVTFVLTITVPINNLIYTYILKDGALSWGGPAEVDLSFLELITFIGVIAALVQILEMVLERFSPSLYNALGIFLP 117 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 3445555555555555554444433311 11222232332222222222234678899999999888888888
Q ss_pred hHHHHHHH
Q 014898 303 PIAVGTVA 310 (416)
Q Consensus 303 ~is~i~ll 310 (416)
.+..=+.+
T Consensus 118 LI~tNCaV 125 (200)
T TIGR01940 118 LITVNCAI 125 (200)
T ss_pred HHHHHHHH
Confidence 77654433
No 96
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=37.26 E-value=4.4e+02 Score=26.69 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCC
Q 014898 176 IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGN 230 (416)
Q Consensus 176 l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn 230 (416)
+....+....+.=.++|..++.++++.+....+.++..+=....+..++..+-+|
T Consensus 225 v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~ 279 (319)
T COG0385 225 IFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGN 279 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCC
Confidence 3444444555566678888899999888888888887777766666665555544
No 97
>PRK09292 Na(+)-translocating NADH-quinone reductase subunit D; Validated
Probab=36.76 E-value=3.8e+02 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHhCcCchHHHHHHH
Q 014898 281 LGGAFLNQYFHSLVKFVSPLMPPIAVGTVA 310 (416)
Q Consensus 281 ~lG~llr~~~p~~~~~i~~~l~~is~i~ll 310 (416)
..-++++++.|+..+.+..+++.+..=+.+
T Consensus 85 ~ve~~l~a~~p~Ly~~LGiflpLIvtNC~V 114 (209)
T PRK09292 85 VVDQVLKAYAYDISKQLSVFVGLIITNCIV 114 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 467889999999988888888776554433
No 98
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=35.83 E-value=4.5e+02 Score=29.16 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHH-HHHHHHhcCCChhHHHHHhHhccCc
Q 014898 184 YSVMPIS-GFLVSKLLNLPSHYAAGLILVGCCP 215 (416)
Q Consensus 184 ~vl~Pll-a~~l~~~~~l~~~~~~glvl~~~~P 215 (416)
|-.+|++ +|-.++-|+-+|.++..+-...+.|
T Consensus 154 FyFLPi~ia~saAkkf~~np~lg~~ig~~L~~P 186 (627)
T PRK09824 154 FFFFPIILGYTAGKKFGGNPFTAMVIGGALVHP 186 (627)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHCh
Confidence 5556655 8889999998887665555555666
No 99
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=34.61 E-value=3.9e+02 Score=25.00 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=48.5
Q ss_pred HhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHHHHHHHHHHHHHHHHHH
Q 014898 210 LVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQY 289 (416)
Q Consensus 210 l~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll~~vllPl~lG~llr~~ 289 (416)
.++.||.-..|. ..+.-..+..+.+.+-++-++..-++.-.++. ..+.+...+...++..-.+=...-+++|++
T Consensus 22 ~LG~Cp~laVs~----~~~~a~gmGlav~fV~~~s~~~~~~i~~~il~--p~~l~~lr~~~fIlvIA~~V~~ve~~l~~~ 95 (193)
T PRK05151 22 FLGLCPFMGVSK----KLETAIGMGLATTFVLTLASICAWLVNTYILI--PLDLIYLRTLAFILVIAVVVQFTEMVVRKT 95 (193)
T ss_pred HHhcCchhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555533332 22333345555566666655555554443331 112233333322222222233456779999
Q ss_pred hHHHHHHHhCcCchHHHHHH
Q 014898 290 FHSLVKFVSPLMPPIAVGTV 309 (416)
Q Consensus 290 ~p~~~~~i~~~l~~is~i~l 309 (416)
.|+..+.+...++.+..=+.
T Consensus 96 ~p~Ly~~LGiflpLI~tNCa 115 (193)
T PRK05151 96 SPTLYRLLGIFLPLITTNCA 115 (193)
T ss_pred hHHHHHHHhhhhhHHHHHHH
Confidence 99998888888887655433
No 100
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=32.10 E-value=5.3e+02 Score=29.56 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcccCChhHHHH-h--hhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH
Q 014898 147 IIGLTLTMLGMGMTLTLDDLRG-A--LAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 147 ~~~l~l~m~~~Gl~L~~~~l~~-~--~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~ 223 (416)
.++-..+++.+|+.+...++.. . ...++.+++++++-++.-|..++.+..+.+......--+++--.=|-|+.|..+
T Consensus 298 ~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyy 377 (810)
T TIGR00844 298 VLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFA 377 (810)
T ss_pred HHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHH
Confidence 3445566777888898877742 1 123567788888889999988887655554333455666777777888877766
Q ss_pred HHHh
Q 014898 224 TYIA 227 (416)
Q Consensus 224 t~~~ 227 (416)
...+
T Consensus 378 l~~A 381 (810)
T TIGR00844 378 AILS 381 (810)
T ss_pred HHHH
Confidence 5444
No 101
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=31.51 E-value=4.1e+02 Score=24.29 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHHHHHHHH--HHHHHHHHHHHHHHHHhHHH
Q 014898 230 NVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTL--QVVLLPVLGGAFLNQYFHSL 293 (416)
Q Consensus 230 n~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~l~~~ll--~~vllPl~lG~llr~~~p~~ 293 (416)
|.........++.+++.++.|+....+..+ +...+....++. ...+.-+.++..+.|+.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~ 67 (273)
T PF01943_consen 4 NSLWLFLSNILSALIGFITIPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEY 67 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 344556677788899999999999888432 222333333332 23334455566666655553
No 102
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=31.08 E-value=1.2e+02 Score=29.64 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHH
Q 014898 334 AAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVV 377 (416)
Q Consensus 334 ~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~ 377 (416)
.++++...++.+=+=.---+|.|+++.||+.. +.-+-.++..
T Consensus 167 IAl~FI~~~mAIlHPFNACLGP~E~q~RTL~l--a~e~G~ls~i 208 (264)
T PRK01030 167 IALLFILGGMAILHPFNACLGPNESQDRTLTL--AVECGFLSMI 208 (264)
T ss_pred HHHHHHHHHHHhcCccccccCCCcchhHHHHH--HHHHHHHHHH
Confidence 44455555555544444457899988887654 3333344443
No 103
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=29.69 E-value=6.7e+02 Score=26.21 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhHHHHHhHhc-cCchhhHHHH
Q 014898 145 WTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPI-SGFLVSKLLNLPSHYAAGLILVG-CCPGGTASNI 222 (416)
Q Consensus 145 l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Pl-la~~l~~~~~l~~~~~~glvl~~-~~P~~~~s~i 222 (416)
.....++..+|.-|.+++.+++++..+ .+..-...-.++.=+ .++..-.+++ +-+++.++.+-+ .+||.+.+..
T Consensus 62 ~~~l~l~ilLf~~g~~l~~~~l~~~~~---~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 62 FLVLFLAILLFAGGLELDLRELRRVWR---SILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHhHhcCCHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhH
Confidence 346789999999999999999996643 222211111111111 2222222332 223333333333 3455444332
Q ss_pred -HHHHhCCChHHHHHHHH---HHHHHHHHHHHHHHHHhcCcee---eechHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014898 223 -VTYIARGNVALSVLMTA---ASTLSAVVMTPFLTAKLAGQYV---AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHS 292 (416)
Q Consensus 223 -~t~~~~Gn~~ls~~lt~---istlls~~~~Pl~l~ll~g~~v---~i~~~~l~~~ll~~vllPl~lG~llr~~~p~ 292 (416)
..+..+=+..++..+.. ++--.+++..=+.+....++.. +......+.....-+.+=+++|.+.++...+
T Consensus 138 ~i~~~~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~ 214 (429)
T COG0025 138 PIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRR 214 (429)
T ss_pred HHHhcCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554 4444454444444444443221 1222333444444555666666666554443
No 104
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=29.22 E-value=4.2e+02 Score=23.71 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcccCChhHHHHhhhc-h--HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhc
Q 014898 145 WTIIGLTLTMLGMGMTLTLDDLRGALAM-P--KEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVG 212 (416)
Q Consensus 145 l~~~~l~l~m~~~Gl~L~~~~l~~~~~~-p--~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~ 212 (416)
+-...+.+-++++|++--.+=+. .+++ - .....+.+...+..=+..+...+++++++....|.+-=+
T Consensus 55 l~~~GL~lFl~~vGl~aG~~f~~-~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa 124 (154)
T TIGR01625 55 IREFGLMLFLYGVGLSAGPGFFS-SLKDGGGLLRINGGALITVVPTLLVAVALIKLLRINYALTAGMLAGA 124 (154)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH-HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcc
Confidence 33455666667788876665554 4444 2 233333332222222223444467899999999985433
No 105
>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.11 E-value=74 Score=33.78 Aligned_cols=126 Identities=24% Similarity=0.310 Sum_probs=76.6
Q ss_pred CChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhHHHHHhHhc---cCchhhHHHHHHHHhCCC
Q 014898 161 LTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKL-------LNLPSHYAAGLILVG---CCPGGTASNIVTYIARGN 230 (416)
Q Consensus 161 L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~-------~~l~~~~~~glvl~~---~~P~~~~s~i~t~~~~Gn 230 (416)
++.-|.++-. ..|...+.++...+..-+..|...+. ++++++ ..|+-+++ ..|==..|.+.++..=||
T Consensus 411 ~TvPdvrkp~-~rkfF~vTFigSIlWIA~fSYLMVWwa~~iGeT~gIp~e-IMGLTiLAAGTSIPDlitSvIVARKGlGD 488 (588)
T KOG1307|consen 411 LTVPDVRKPR-SRKFFPVTFIGSILWIAAFSYLMVWWANIIGETLGIPDE-IMGLTILAAGTSIPDLITSVIVARKGLGD 488 (588)
T ss_pred EecCCcCCcc-ccceeehHHHHHHHHHHHHHHHHHHHHHHcccccCCCHH-HhhhhhhhcCCchHHhhHhhhhccccccc
Confidence 3445555432 22334455555555555555555443 445554 45666655 466667888899999999
Q ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHhcCce---eeechHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 014898 231 VALSVLMTAASTLSAVV---MTPFLTAKLAGQY---VAVDAMGLFMS--TLQVVLLPVLGGAFLNQYF 290 (416)
Q Consensus 231 ~~ls~~lt~istlls~~---~~Pl~l~ll~g~~---v~i~~~~l~~~--ll~~vllPl~lG~llr~~~ 290 (416)
++.|-+ +-|++.-+. =+|.+++.+.... +.++.-+++.+ ++..+++=++.|+.+++|.
T Consensus 489 MAVSsS--iGSNiFDI~VGLplPWLL~~lI~~~~~~i~vsS~GL~csi~lLf~ml~v~v~~ia~~rWr 554 (588)
T KOG1307|consen 489 MAVSSS--IGSNIFDILVGLPLPWLLYTLIYGFKSKISVSSNGLVCSIGLLFAMLIVLVLGIALSRWR 554 (588)
T ss_pred ceeecc--cccchhheeecCCcHHHHHHHHhhcCCceeecCCceehHHHHHHHHHHHHHHHHHHHhhh
Confidence 986543 345554442 3677777664432 66776566544 4566777788899999884
No 106
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=28.61 E-value=7e+02 Score=26.08 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=51.6
Q ss_pred HHHhcccCChhHHHHhhhchHHHHHHHHHH-HHHHHHHHHHHHHhcCCChhHHHHHhHhccC--c----hhhHHHHHHHH
Q 014898 154 MLGMGMTLTLDDLRGALAMPKEIISGFVLQ-YSVMPISGFLVSKLLNLPSHYAAGLILVGCC--P----GGTASNIVTYI 226 (416)
Q Consensus 154 m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~-~vl~Plla~~l~~~~~l~~~~~~glvl~~~~--P----~~~~s~i~t~~ 226 (416)
+-++|++-+++.+++--|+ ..+......- -++-=.++..++++++++|.+ |++.-+.. - .+..++.+.++
T Consensus 76 Fttiglsa~~~~lkkgGk~-l~if~~~a~~l~~~Qn~igi~la~~lgidpl~--gllagsIsl~GGHGtaAA~~~~f~~~ 152 (404)
T COG0786 76 FATIGLSASFKLLKKGGKK-LAIFLATAAGLAVLQNFIGIGLAKLLGLDPLI--GLLAGSISLVGGHGTAAAWGPTFEDL 152 (404)
T ss_pred HHHhccccchhHHHhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHcCccHHH--HHHhcceeecCCCchHHHHHHHHHhc
Confidence 4488999999999866443 2222222111 223334566778888887754 44331111 1 12234444444
Q ss_pred -hCCChHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 014898 227 -ARGNVALSVLMTAASTLSAVVM-TPFLTAKL 256 (416)
Q Consensus 227 -~~Gn~~ls~~lt~istlls~~~-~Pl~l~ll 256 (416)
+.+-.+++.+..+...+.+.+. .|+-=++.
T Consensus 153 G~~~A~~va~A~ATfGlv~GgliGgpva~~li 184 (404)
T COG0786 153 GAEGATEVAMASATFGLVAGGLIGGPVARWLI 184 (404)
T ss_pred CCcchHHHHHHHHHHHHHHhHhcCcHHHHHHH
Confidence 2233345555555666665544 46555444
No 107
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=28.39 E-value=6.6e+02 Score=25.73 Aligned_cols=109 Identities=10% Similarity=0.123 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEe--cccccHHHHHHHHHH
Q 014898 304 IAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFFFGYVLARMLGIDVASCRTISIE--VGMQNSVLGVVLASQ 381 (416)
Q Consensus 304 is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~lg~llarll~~~~~~~~al~~~--tg~qN~~Lai~La~~ 381 (416)
+......+++++.++.|++.+.....+.+...+.=...++..|-+.+.++|.+..|..-.-.- .|--|.+=++++...
T Consensus 27 l~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~~i~lPIm~GG~GaGavPLS~~ 106 (347)
T TIGR00783 27 LYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLMYIVMPIMAGGVGAGIVPLSII 106 (347)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhheeeehhcCCCcccchhhHHHH
Confidence 444455556778888898888776666666655556677888888888999888775532221 122332333444432
Q ss_pred h---cCCc------chHHHHHHHHHHHHHHHHHHHHHHhh
Q 014898 382 H---FGSP------MAAVPCAVSSVCHSIFGSVLAGIWRR 412 (416)
Q Consensus 382 ~---f~~p------~~alP~~v~~l~q~i~~s~la~~~~r 412 (416)
| .+++ ...-+.++..++-++.++++..+-+|
T Consensus 107 Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~ 146 (347)
T TIGR00783 107 YSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKK 146 (347)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 2332 23334555677777777777544443
No 108
>PF03253 UT: Urea transporter; InterPro: IPR004937 Proteins in this entry include low-affinity urea transporters found in the erythrocytes and kidneys of higher organisms. The erythrocyte proteins carry the clinically important Kidd (Jk) blood group antigens which help determine blood type. The two commonest forms are Jk(a) and Jk(b), which arise from a single residue variation at position 280; aspartate in Jk(a) and asparagine in Jk(b) []. A much rarer phenotype, Jk(null), arises when the protein is not expressed on the erythrocyte surface, and is linked to a urine-concentrating defect []. The Kidd blood group is clinically significant as Jk antibodies can cause acute transfusion reactions and haemolytic disease of the newborn (HDN), where the mother's body creates antibodies against the foetal blood cells. HDN associated with Jk antibodies is generally mild, but fatal cases can occur []. The bacterial proteins in this entry also appear to be involved in urea transport, promoting its entry into the cell []. This uptake of urea can be advantageous for bacteria as its hydrolysis by urease generates ammonium which is an efficient source of nitrogen and, through its buffering capacity, can also provide resistance to acidic conditions.; GO: 0015204 urea transmembrane transporter activity, 0071918 urea transmembrane transport, 0016021 integral to membrane; PDB: 3M6E_A 3K3G_A 3ME1_B 3K3F_A.
Probab=28.35 E-value=1.4e+02 Score=29.84 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHH-HHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014898 338 LHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVL-GVVLASQHFG-SPMAAVPCAVSSVCHSIFGSVLAGIWRRS 413 (416)
Q Consensus 338 l~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~L-ai~La~~~f~-~p~~alP~~v~~l~q~i~~s~la~~~~r~ 413 (416)
..++|-..+.+.++++|.|+++.+.=-+ | =|..+ |+.+. .+++ ++...+.+++....-.++...+..+.+|+
T Consensus 39 ~~llg~~~stltA~ll~~~~~~i~~GL~--G-fNg~LvG~al~-~f~~~~~~~~~l~~~ga~ls~~v~~~l~~~~~~~ 112 (301)
T PF03253_consen 39 GALLGALISTLTARLLGYDRDDIRNGLY--G-FNGALVGLALG-VFLPPSPLSWLLIILGAILSTIVTAALSRLLKPW 112 (301)
T ss_dssp HHHHHHHHHHHHHHHCT--HHHHHTTTT--T-HHHHHHHHHHH-HHBB--TTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcccc--c-ccHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4556778889999999999876644111 3 36544 44444 4443 56666667677766666666665555443
No 109
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=28.25 E-value=6.5e+02 Score=25.58 Aligned_cols=130 Identities=18% Similarity=0.124 Sum_probs=60.5
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccc-hhhh---HHHHHHHHHHHHHHhcccCChhHHHHhhh-chH
Q 014898 100 NNSRSFREWIELIGELISTAFPIWVSLGCLLGLVKPSSF-NWVQ---PKWTIIGLTLTMLGMGMTLTLDDLRGALA-MPK 174 (416)
Q Consensus 100 ~~~~~~~~~~~~i~~~l~~~~pl~i~~~~l~gl~~P~~~-~~~~---~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~-~p~ 174 (416)
+++.++++.++. .+.+---+.++-+.++|+...+.. ..+. .....-.+.+-++-||+.- -+++++..+ .++
T Consensus 162 ~~~~~~~~~l~E---~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~ 237 (327)
T PF05982_consen 162 HEGISWGELLHE---SLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEMGLVA-ARRLRDLRKVGWF 237 (327)
T ss_pred cccccHHHHHHH---HHcCchHHHHHHHHHHhheeCccchhhccchhhccHHHHHHHHHHHhhHHH-HHhhHHHHhhhHH
Confidence 344455555543 333222334455666777664432 2222 2223334566667777542 333433211 122
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHhcCCChhHHHHHhHhccCchhhHHHH--HHHHhCCChHHHHHHH
Q 014898 175 EIISGFVLQYSVMPIS----GFLVSKLLNLPSHYAAGLILVGCCPGGTASNI--VTYIARGNVALSVLMT 238 (416)
Q Consensus 175 ~l~~~l~~~~vl~Pll----a~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i--~t~~~~Gn~~ls~~lt 238 (416)
.+.. =++||++ ++.+++++++++.-+.-+..++++-+=.+.+- -...=+.|..+.+.+.
T Consensus 238 li~F-----gi~~Pli~a~ig~~lg~~~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~S 302 (327)
T PF05982_consen 238 LIAF-----GILMPLINALIGIGLGWLLGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTAS 302 (327)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHH
Confidence 2222 3457766 55566777776654444444433332222222 2344477777665543
No 110
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=27.94 E-value=1.6e+02 Score=22.48 Aligned_cols=33 Identities=6% Similarity=0.123 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 014898 267 GLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSP 299 (416)
Q Consensus 267 ~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~ 299 (416)
++++-+.+..++=+-+|.+.+++.|++-+.+..
T Consensus 5 DiiQii~l~AlI~~pLGyl~~~~~~r~~~~lr~ 37 (62)
T PF11120_consen 5 DIIQIIILCALIFFPLGYLARRWLPRIRRTLRR 37 (62)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHH
Confidence 344434445555556899999999997665543
No 111
>PRK05326 potassium/proton antiporter; Reviewed
Probab=26.32 E-value=5.7e+02 Score=27.57 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHH
Q 014898 144 KWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIV 223 (416)
Q Consensus 144 ~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~ 223 (416)
.+.....++.++..|+.+++.++.+.. +..+.+.++..++.=|+..+...+.++.+.. -..++--+-|=|..+.++
T Consensus 274 ~l~~l~~~~~Fv~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~~--e~~~i~~~g~RG~v~i~l 349 (562)
T PRK05326 274 GLAWLAQIGMFLVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLLPFRFNLR--EKLFISWVGLRGAVPIVL 349 (562)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCHh--hhheeeeecchhHHHHHH
Confidence 345556677778899999998886432 2233334444556667777766666654332 223332233555555444
Q ss_pred HHH---hC---CCh--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014898 224 TYI---AR---GNV--ALSVLMTAASTLSAVVMTPFLTAKL 256 (416)
Q Consensus 224 t~~---~~---Gn~--~ls~~lt~istlls~~~~Pl~l~ll 256 (416)
+.. ++ ++. .....++.+|+++...++|.....+
T Consensus 350 A~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 350 ATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 322 11 111 2334556678888888888777665
No 112
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=26.14 E-value=7.6e+02 Score=25.69 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcccCChhHHHHhhhchHHHHHHH-HHHHHHHHHHHHHHHHhcCCChhHHHHHhH-hccCch-----hhH
Q 014898 147 IIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGF-VLQYSVMPISGFLVSKLLNLPSHYAAGLIL-VGCCPG-----GTA 219 (416)
Q Consensus 147 ~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l-~~~~vl~Plla~~l~~~~~l~~~~~~glvl-~~~~P~-----~~~ 219 (416)
...+-..+-++|++-+.+.+++.- +|-...... ..-.+..=.++..+++.++++|.. |++. -...-+ +..
T Consensus 67 ~~lm~~fFatigLga~~~~l~~gg-~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~--Gll~gsi~~~GGHGTAaA~ 143 (398)
T TIGR00210 67 DPLMLIFFTTIGLSANFKSLLKGG-KPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLM--GLLAGSITLSGGHGTGAAW 143 (398)
T ss_pred HHHHHHHHHHhhhcCChHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHhhCccCCCCCcHHHHH
Confidence 344444555888888888877542 222111111 112344445677778888988844 4442 122222 223
Q ss_pred HHHHHHH--hCCChHHHHHHHHHHHHHHHHH-HHHHHHH
Q 014898 220 SNIVTYI--ARGNVALSVLMTAASTLSAVVM-TPFLTAK 255 (416)
Q Consensus 220 s~i~t~~--~~Gn~~ls~~lt~istlls~~~-~Pl~l~l 255 (416)
+..+.+. ..+-.+++++..++..+.+.+. .|+.-++
T Consensus 144 g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~l 182 (398)
T TIGR00210 144 SPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFL 182 (398)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 2344456666666666766655 5665443
No 113
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=25.84 E-value=2.3e+02 Score=24.75 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhh-----chHHHHHHHHHHH
Q 014898 110 ELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALA-----MPKEIISGFVLQY 184 (416)
Q Consensus 110 ~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~-----~p~~l~~~l~~~~ 184 (416)
+.+.+|+.+.=-+=+++|+++|-.+-...+.+.+.+. .|++-...|- .+++++.-.+. -..+..+..++||
T Consensus 5 keFkeF~~RGNVvDLAVgVIIGaAFg~IV~SlV~diI---mPlIg~~~gg-~dfs~l~~~l~~~~~~i~yG~Fi~~vinF 80 (130)
T COG1970 5 KEFKEFALRGNVVDLAVGVIIGAAFGKIVTSLVNDII---MPLIGLLVGG-LDFSNLFITLGIPAVVIAYGAFIQAVINF 80 (130)
T ss_pred HHHHHHHHccChhhHHHHHHhHHHHHHHHHHHHHHHH---HhhhhhhcCC-cChhhheeecCCCceeeeHhHHHHHHHHH
Confidence 3444455432233445666666666655555544433 3333333343 67777665544 2245667777899
Q ss_pred HHHHHHHHHHHHhc
Q 014898 185 SVMPISGFLVSKLL 198 (416)
Q Consensus 185 vl~Plla~~l~~~~ 198 (416)
++.-...|.+.+..
T Consensus 81 lIiAf~iFl~Vk~i 94 (130)
T COG1970 81 LIIAFAIFLVVKAI 94 (130)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888877765
No 114
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=25.72 E-value=81 Score=32.53 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccH---HHHHHHHHHh-----cCCcc-hHHHHHHHHHHHHHHHHH
Q 014898 335 AFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNS---VLGVVLASQH-----FGSPM-AAVPCAVSSVCHSIFGSV 405 (416)
Q Consensus 335 ~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~---~Lai~La~~~-----f~~p~-~alP~~v~~l~q~i~~s~ 405 (416)
+.+-...|..+||+..+.++.+++.+.=+..+|+.+|+ .++++-|... |+|+. .+-=-+.|..+-+-.|.+
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 33445688999999999999999887766666777764 5666655543 33332 222233455444444555
Q ss_pred H
Q 014898 406 L 406 (416)
Q Consensus 406 l 406 (416)
+
T Consensus 162 l 162 (408)
T KOG2722|consen 162 L 162 (408)
T ss_pred E
Confidence 4
No 115
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=25.31 E-value=7.5e+02 Score=25.33 Aligned_cols=140 Identities=14% Similarity=0.208 Sum_probs=71.6
Q ss_pred HHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhHh--ccC--chhh--HHHHH
Q 014898 150 LTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILV--GCC--PGGT--ASNIV 223 (416)
Q Consensus 150 l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl~--~~~--P~~~--~s~i~ 223 (416)
+...+-++|++-+.+.+++.-|+-...........++-=+++..++++++++|.+ |++.- +-. +++. ....+
T Consensus 70 m~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~f 147 (368)
T PF03616_consen 70 MIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPTF 147 (368)
T ss_pred HHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH--HHHhccccccCCccHHHHHHHHH
Confidence 3334558899999988886543322211111122344455677788888888754 44321 111 2222 23344
Q ss_pred HHHhC--CChHHHHHHHHHHHHHHH-HHHHHHHHHhc-Cc--------e----e-----------eechHHHHHHHHHHH
Q 014898 224 TYIAR--GNVALSVLMTAASTLSAV-VMTPFLTAKLA-GQ--------Y----V-----------AVDAMGLFMSTLQVV 276 (416)
Q Consensus 224 t~~~~--Gn~~ls~~lt~istlls~-~~~Pl~l~ll~-g~--------~----v-----------~i~~~~l~~~ll~~v 276 (416)
.+..| +-.+++.+..++..+.+. +=.|+.-++.- ++ . . +++..+++.. +..+
T Consensus 148 e~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~-l~~i 226 (368)
T PF03616_consen 148 EELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEH-LALI 226 (368)
T ss_pred HHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHH-HHHH
Confidence 44323 334556666666666654 44677554431 00 0 0 0112333333 3467
Q ss_pred HHHHHHHHHHHHHhHH
Q 014898 277 LLPVLGGAFLNQYFHS 292 (416)
Q Consensus 277 llPl~lG~llr~~~p~ 292 (416)
.+.+.+|..++.+..+
T Consensus 227 ~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 227 LIAIGLGYIISALLKK 242 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777788877776654
No 116
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=22.65 E-value=1.2e+02 Score=27.64 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=40.7
Q ss_pred ccccCccCcccccccccccccccceeeeecccCCCcccccceEEEEeecccccccc
Q 014898 6 PCSNTRLNFEPYTTHISSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHV 61 (416)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (416)
.|-+.+....|+.-++.-.-.+++-|+++|-.++|+ .-|.+|++-.+.+.+++
T Consensus 101 ~Cr~~~~~~~~~~~r~~~~~~~~~lL~i~~p~~~ds---G~Y~lRV~l~~~~~~d~ 153 (161)
T PF01688_consen 101 GCRSKRSYHSPAYPRLNTSPENGVLLRIRNPRPEDS---GIYYLRVWLDGANKADV 153 (161)
T ss_pred hhhhcceecCCCccccccCCCcceEEEeCCCCcccc---eEEEEEEEECCCCCCcE
Confidence 466666666888888888888889999999888665 67899998887655554
No 117
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.73 E-value=8.9e+02 Score=24.90 Aligned_cols=95 Identities=11% Similarity=0.118 Sum_probs=51.5
Q ss_pred HHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHH-HHHHHHHHH---HHHHHHHHHhcCc-----------
Q 014898 195 SKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLM-TAASTLSAV---VMTPFLTAKLAGQ----------- 259 (416)
Q Consensus 195 ~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~l-t~istlls~---~~~Pl~l~ll~g~----------- 259 (416)
.+.++.||....+.++-.=+-+ |-.+.....|.+..... ..+++.+++ +++|+-+..+-.+
T Consensus 70 ~~~~GaDPamfa~tiLA~DMGG----Y~LA~~la~~~~~~~fsG~ilgsmlG~TIvFtIPVaLgii~k~D~~y~a~Gil~ 145 (354)
T PF04346_consen 70 FQAIGADPAMFAGTILANDMGG----YQLAMELAQDPEAGIFSGLILGSMLGATIVFTIPVALGIIEKEDHKYLAKGILA 145 (354)
T ss_pred HHHhCCCHHHHHHHHhhhcCcC----HHHHHHHcCChhhHHHHHHHHHHhhcccEEeehhhhhhhcChhhhHHHHHHHHH
Confidence 3455778888877776433333 33344444444443333 333333332 5567666543211
Q ss_pred --------------eeeechHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014898 260 --------------YVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSL 293 (416)
Q Consensus 260 --------------~v~i~~~~l~~~ll~~vllPl~lG~llr~~~p~~ 293 (416)
...+|...++.+++-.+++-++++..++++..+.
T Consensus 146 GiitIPiG~~vggl~~g~~~~~il~Nl~Pvii~~~lla~GL~~~p~~m 193 (354)
T PF04346_consen 146 GIITIPIGCFVGGLIAGFDIGMILINLIPVIIFAILLAIGLWFFPEKM 193 (354)
T ss_pred HHhhhCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1234555667777777888888888888664443
No 118
>PF02508 Rnf-Nqr: Rnf-Nqr subunit, membrane protein; InterPro: IPR003667 The rnf genes of Rhodobacter capsulatus, essential for nitrogen fixation, are thought to encode a system for electron transport to nitrogenase. The rnfABCDGEH operon comprises seven genes that show similarities in gene arrangement and deduced protein sequences to homologous regions in the genomes of Haemophilus influenzae and Escherichia coli. Four of the rnf gene products were found to be similar in sequence to components of an Na+-dependent NADH:ubiquinone oxidoreductase (NQR) from Vibrio alginolyticus []. The NQR-type enzyme of Klebsiella pneumoniae was shown to catalyse sodium-dependent NADH oxidation in the respiratory chain [].; GO: 0016020 membrane
Probab=21.24 E-value=6.6e+02 Score=23.25 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHHHHHHhCcCchHHHHH
Q 014898 280 VLGGAFLNQYFHSLVKFVSPLMPPIAVGT 308 (416)
Q Consensus 280 l~lG~llr~~~p~~~~~i~~~l~~is~i~ 308 (416)
..+-+++|++.|+..+.+..+++.+..=+
T Consensus 84 ~~v~~~l~~~~p~l~~~LgiylpLi~~Nc 112 (190)
T PF02508_consen 84 QLVEMVLRAYFPSLYKALGIYLPLITVNC 112 (190)
T ss_pred HHHHHHHHHHCHHHHHHHHHhhhHHHHHH
Confidence 34678899999999888888877765433
No 119
>COG4413 Utp Urea transporter [Amino acid transport and metabolism]
Probab=20.49 E-value=8.4e+02 Score=24.15 Aligned_cols=201 Identities=18% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC-CChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeechHH
Q 014898 189 ISGFLVSKLLN-LPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMG 267 (416)
Q Consensus 189 lla~~l~~~~~-l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~~~~ 267 (416)
.++..+++..+ .+.++..|+.=.-.|=.|..-..+-....++. .++++.++.++...-.....+ +.-.++...
T Consensus 52 vl~~~vAr~i~~s~~s~~~GlyGyN~vLvg~al~~fla~sp~l~----~i~vlg~lvSv~v~aav~~il--r~~kvp~lT 125 (319)
T COG4413 52 VLGPLVARLIHCSDSSIRAGLYGYNGVLVGAALPFFLAWSPGLW----SIVVLGCLVSVAVQAAVLHIL--RTWKVPALT 125 (319)
T ss_pred HHHHHHHHHHHhhHhHHHhccccccHHHHHHHHHHHhcCCccee----hHHHHHHHHHHHHHHHHHHHh--hhccCcccc
Q ss_pred HHHHHHHHHHHHHH----------------HHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHH
Q 014898 268 LFMSTLQVVLLPVL----------------GGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQV 331 (416)
Q Consensus 268 l~~~ll~~vllPl~----------------lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~i 331 (416)
+-.-+....++++. ---....+.++..+.+..++..++.+++.--....+.--...+.++-|
T Consensus 126 ~pFVlttWflvllsyaf~~l~~s~l~llPq~~~~~~~~~~s~~~~l~alf~G~sqVfl~~s~iaGvlvvIGllI~Sr~-- 203 (319)
T COG4413 126 LPFVLTTWFLVLLSYAFKFLDTSWLPLLPQAHGGCASCAWSGTAELAALFLGISQVFLLGSPIAGVLVVIGLLIVSRW-- 203 (319)
T ss_pred cchHHHHHHHHHHHhhhcCCCCcccccCchhhhcccccCcchHHHHHHHHhCchheeeecchhhhHHHHHHHHHHhhH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 014898 332 ALAAFLLHASGFFFGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFGSPMAAVPCAVSSVCHSIF 402 (416)
Q Consensus 332 ll~~~ll~~~gf~lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~~p~~alP~~v~~l~q~i~ 402 (416)
+.++.++|-.+...++.++|-|.+|..+=-| |..-.-.|+.+..+++++-....|..+..++-.+.
T Consensus 204 ---Aav~Al~gaalsl~la~lLg~d~asinaGly--gfn~vLtaiaLg~tf~ps~r~~~~tvLGvvltV~v 269 (319)
T COG4413 204 ---AAVFALAGAALSLPLAWLLGADWASINAGLY--GFNAVLTAIALGLTFRPSIRVVWPTVLGVVLTVAV 269 (319)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCHHHHhhhhh--hhhHHHHHHHHhccccccchhhHHHHHHHHHHhhc
Done!