Query 014898
Match_columns 416
No_of_seqs 212 out of 1534
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:05:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 1.3E-51 4.6E-56 411.2 31.6 310 105-415 5-315 (332)
2 3zux_A Transporter, ASBTNM; tr 35.9 2.9E+02 0.01 26.2 14.9 35 176-210 230-264 (332)
3 1z9l_A Vesicle-associated memb 22.8 73 0.0025 26.0 3.8 53 6-64 5-60 (128)
4 2cri_A Vesicle-associated memb 20.3 1E+02 0.0034 25.9 4.3 52 6-63 9-63 (147)
5 1wic_A Hypothetical protein ri 18.8 1.4E+02 0.0049 25.2 5.0 52 6-63 13-67 (152)
6 2kv5_A FST, putative uncharact 13.8 1.4E+02 0.0047 19.0 2.5 18 272-289 4-21 (33)
7 3k3f_A UREA transporter; membr 13.0 3.7E+02 0.012 26.0 6.7 70 337-412 53-126 (340)
8 2oar_A Large-conductance mecha 12.1 2.4E+02 0.0081 24.7 4.5 90 104-198 20-117 (174)
9 1row_A SSP-19, MSP-domain prot 11.5 1.6E+02 0.0053 23.6 3.0 43 12-61 3-45 (109)
10 2qzq_A Axin interactor, dorsal 10.1 2E+02 0.0068 24.7 3.3 46 25-70 12-57 (152)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=1.3e-51 Score=411.20 Aligned_cols=310 Identities=37% Similarity=0.664 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhhhchHHHHHHHHHHH
Q 014898 105 FREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGALAMPKEIISGFVLQY 184 (416)
Q Consensus 105 ~~~~~~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~~~p~~l~~~l~~~~ 184 (416)
.++.++++.+++.+++++++++++++|+..|+.+.+..++ .+.+++++||++|++++.+|+++.++|||.+..++++|+
T Consensus 5 ~m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~ 83 (332)
T 3zux_A 5 SMNILSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF 83 (332)
T ss_dssp --CHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHH
Confidence 3456678888999999999999999999999998887654 456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHhHhccCchhhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeec
Q 014898 185 SVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVD 264 (416)
Q Consensus 185 vl~Plla~~l~~~~~l~~~~~~glvl~~~~P~~~~s~i~t~~~~Gn~~ls~~lt~istlls~~~~Pl~l~ll~g~~v~i~ 264 (416)
+++|+++|+++++++++++++.|+++++||||+.+|++||+++|||.++++.++++||+++++++|+++.++.|+.+++|
T Consensus 84 vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~ 163 (332)
T 3zux_A 84 AIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQ 163 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcCchHHHHHHHHHHHHHHHhhHHHHhhhchHHHHHHHHHHHHHHH
Q 014898 265 AMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPIAVGTVAILCGNAIAQSASAILTSGPQVALAAFLLHASGFF 344 (416)
Q Consensus 265 ~~~l~~~ll~~vllPl~lG~llr~~~p~~~~~i~~~l~~is~i~ll~ii~~~i~~~~~~i~~~~~~ill~~~ll~~~gf~ 344 (416)
+.+++.+++..+++|+++|+++|++.|++.++.++.++.++...+++++...++.+++.+.+.++.++.++++++.++|.
T Consensus 164 ~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~ 243 (332)
T 3zux_A 164 AAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYL 243 (332)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888888888888888888777888889999999999
Q ss_pred HHHHHHHHhCCCccceeeeEEecccccHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014898 345 FGYVLARMLGIDVASCRTISIEVGMQNSVLGVVLASQHFG-SPMAAVPCAVSSVCHSIFGSVLAGIWRRSTP 415 (416)
Q Consensus 345 lg~llarll~~~~~~~~al~~~tg~qN~~Lai~La~~~f~-~p~~alP~~v~~l~q~i~~s~la~~~~r~~~ 415 (416)
+||+++|++|++++|++|+++|||+||+++|+++|..+|+ +|.+++|+++|+++|++.+++++.+|+||+.
T Consensus 244 lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~ 315 (332)
T 3zux_A 244 LGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAG 315 (332)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 9999999999999999999999999999999999999996 6899999999999999999999999998875
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=35.89 E-value=2.9e+02 Score=26.24 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhH
Q 014898 176 IISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLIL 210 (416)
Q Consensus 176 l~~~l~~~~vl~Plla~~l~~~~~l~~~~~~glvl 210 (416)
+....+..+.+.-.++|.+++.++.+.+....+.+
T Consensus 230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~ 264 (332)
T 3zux_A 230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTI 264 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhh
Confidence 33334445556666677777777777666555444
No 3
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=22.84 E-value=73 Score=26.00 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=36.6
Q ss_pred ccccCccCcccc-cccc--cccccccceeeeecccCCCcccccceEEEEeeccccccccCCC
Q 014898 6 PCSNTRLNFEPY-TTHI--SSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKPI 64 (416)
Q Consensus 6 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (416)
+.....+..+|. ++.+ +.++.....++|.|... +++-|++++....+-.+.|.
T Consensus 5 ~~~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~------~~vaFKVKTT~p~~y~VrP~ 60 (128)
T 1z9l_A 5 AKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSD------RKVCFKVKTTAPRRYCVRPN 60 (128)
T ss_dssp CSCCCCSEEESSSEEEEESCCSSCEEEEEEEECCSS------SCEEEEEEESCGGGEEEESC
T ss_pred CCCCCeEEECCCCeEEEcCCCCceEEEEEEEECCCC------CeEEEEEECCCCCceEEeCC
Confidence 445677889996 8888 44455567799999754 56778888776665554443
No 4
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.28 E-value=1e+02 Score=25.90 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=36.3
Q ss_pred ccccCccCcccc-cccc--cccccccceeeeecccCCCcccccceEEEEeeccccccccCC
Q 014898 6 PCSNTRLNFEPY-TTHI--SSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKP 63 (416)
Q Consensus 6 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (416)
+..+..+..+|. ++.+ +.++.....++|.|... +++-|++++....+-.+.|
T Consensus 9 ~~~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~------~~VaFKVKTT~p~~y~VrP 63 (147)
T 2cri_A 9 AKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSD------RKVCFKVKTTAPRRYCVRP 63 (147)
T ss_dssp CCCCCCSEEESSSEEEEECCSSSCCCEEEEEECCSS------SCEEEEEEESCTTSEEEES
T ss_pred CCCCCeEEECCCCeEEEeCCCCceEEEEEEEECCCC------CcEEEEEECCCCccEEEcC
Confidence 345667889996 8888 44555567899999864 5677888777665544433
No 5
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=18.84 E-value=1.4e+02 Score=25.18 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=37.1
Q ss_pred ccccCccCcccc-cccccccccc--cceeeeecccCCCcccccceEEEEeeccccccccCC
Q 014898 6 PCSNTRLNFEPY-TTHISSHRLT--RTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKP 63 (416)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (416)
+.++..+..+|. ++.+..+... ...|+|.|... +++-|++++....+-.++|
T Consensus 13 ~~~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~------~~VaFKVKTT~p~~y~VrP 67 (152)
T 1wic_A 13 VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTK------NIVAFKVRTTAPEKYRVKP 67 (152)
T ss_dssp CBCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSS------SCEEEEEEESCTTTEEEES
T ss_pred CCCCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCC------CeEEEEEECCCCCceeecC
Confidence 456778999998 8988766544 46799999764 5677888777665555444
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=13.77 E-value=1.4e+02 Score=18.95 Aligned_cols=18 Identities=22% Similarity=0.493 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014898 272 TLQVVLLPVLGGAFLNQY 289 (416)
Q Consensus 272 ll~~vllPl~lG~llr~~ 289 (416)
++..++.|++.|+.++-.
T Consensus 4 i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456789999999998743
No 7
>3k3f_A UREA transporter; membrane protein, channel, TRAN protein, structural genomics, PSI-2; 2.30A {Desulfovibrio vulgaris} PDB: 3k3g_A 3m6e_A 3me1_A
Probab=13.01 E-value=3.7e+02 Score=25.98 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCccceeeeEEeccc--ccHHHH-HHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhh
Q 014898 337 LLHASGFFFGYVLARMLGIDVASCRTISIEVGM--QNSVLG-VVLASQHFG-SPMAAVPCAVSSVCHSIFGSVLAGIWRR 412 (416)
Q Consensus 337 ll~~~gf~lg~llarll~~~~~~~~al~~~tg~--qN~~La-i~La~~~f~-~p~~alP~~v~~l~q~i~~s~la~~~~r 412 (416)
+..++|-.++.+.++++|.|+++... |. =|..+. +.++ .+++ ++...+..++..+.-.++.+.+...+++
T Consensus 53 ~~allG~~~stltA~llg~~~~~i~~-----GL~GfNg~Lvglal~-~f~~~~~~~~~l~i~~~~ls~~v~~~l~~~l~~ 126 (340)
T 3k3f_A 53 VCAVLGTAASTLTAQLLGVDKPLVRA-----GLFGFNGTLAGIALP-FFFNYEPAMLGYVALNGAFTTIIMASLLNFLGK 126 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHT-----TTTTHHHHHHHHHHH-HHBCCCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHh-----hhhhhhHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777888888899998876543 44 365544 4444 4444 3444333334444444443444444443
No 8
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=12.12 E-value=2.4e+02 Score=24.72 Aligned_cols=90 Identities=8% Similarity=0.090 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchhhhHHHHHHHHHHHHHHhcccCChhHHHHhh-------hchHHH
Q 014898 104 SFREWIELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWTIIGLTLTMLGMGMTLTLDDLRGAL-------AMPKEI 176 (416)
Q Consensus 104 ~~~~~~~~i~~~l~~~~pl~i~~~~l~gl~~P~~~~~~~~~l~~~~l~l~m~~~Gl~L~~~~l~~~~-------~~p~~l 176 (416)
..++.++.+.+|+.+-=-+-+++|+++|-.+-...+.+.+.+....+. ++ | +.+++++.-.+ .-..+.
T Consensus 20 ~~~~mlkeFKeFi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIg--l~--G-g~dfs~l~~~l~~~~~~~~i~yG~ 94 (174)
T 2oar_A 20 DDKHMLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLIN--RI--G-VNAQSDVGILRIGIGGGQTIDLNV 94 (174)
T ss_dssp ----CHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--C-CCCEEECCCCTTTCCSCEEECHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--hh--C-CCCcccceEEEecCCCceeeeHHH
Confidence 345566777777765445566777777777777666655544333344 22 3 33444432111 112356
Q ss_pred HHHHHHHHHHHHHHH-HHHHHhc
Q 014898 177 ISGFVLQYSVMPISG-FLVSKLL 198 (416)
Q Consensus 177 ~~~l~~~~vl~Plla-~~l~~~~ 198 (416)
.+..+++|+++-+.. |.+.+..
T Consensus 95 Fi~avInFlIIA~vIYFliVk~i 117 (174)
T 2oar_A 95 LLSAAINFFLIAFAVYFLVVLPY 117 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778898888888 5555543
No 9
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=11.54 E-value=1.6e+02 Score=23.59 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=29.4
Q ss_pred cCcccccccccccccccceeeeecccCCCcccccceEEEEeecccccccc
Q 014898 12 LNFEPYTTHISSHRLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHV 61 (416)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (416)
+.-+|.++.+..+. ....++|.|..+ .++-|.+.+.+...=.+
T Consensus 3 L~i~P~~l~F~~~~-~~~~l~L~N~t~------~~vaFKVKtT~p~~y~V 45 (109)
T 1row_A 3 LTADPPACTVPAAG-VSSTHKLVNGGA------EKIVFKIKSSNNNEYRI 45 (109)
T ss_dssp CEEESSSEEEETTC-EEEEEEEEECSS------SCEEEEEEESCSSSEEE
T ss_pred EEEECCEeEEeCCC-CeEEEEEEcCCC------CeEEEEEEeCCCCceEE
Confidence 34578788877664 468899998765 56677777776554444
No 10
>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A
Probab=10.09 E-value=2e+02 Score=24.66 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=40.4
Q ss_pred ccccceeeeecccCCCcccccceEEEEeeccccccccCCCCCcccc
Q 014898 25 RLTRTQLQLRSQSISSSKSSDQLILRSQSQFQSRLHVKPIWNSPIT 70 (416)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (416)
-.+.+.++|+.+.-+|..+-.+=+|++.-.|....-++|.||.++.
T Consensus 12 g~t~l~v~Ie~iglkda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~ 57 (152)
T 2qzq_A 12 GMTLLTLTIEKIGLKDAGQCIDPYITVSVKDLNGIDLNPVQDTPVA 57 (152)
T ss_dssp TCCEEEEEEEEEECTTGGGCEEEEEEEEEECTTSCBSSCCEECCCC
T ss_pred CCeEEEEEEEEEEeCCHHHccCCeEEEEEEcCCCCCccccccCCCc
Confidence 3467889999999999988888899999999999999999988886
Done!