BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014899
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 154/341 (45%), Positives = 202/341 (59%), Gaps = 15/341 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 416
M +S LD+VL + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
pdb|3PRH|B Chain B, Tryptophanyl-Trna Synthetase Val144pro Mutant From B.
Subtilis
Length = 388
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 205/344 (59%), Gaps = 15/344 (4%)
Query: 73 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 132
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L K
Sbjct: 33 TMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNI 92
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 192
R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS G E
Sbjct: 93 RNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNE 150
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 252
V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 151 AVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND--------- 201
Query: 253 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 312
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK TDS
Sbjct: 202 ---IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDS 258
Query: 313 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 372
++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L PIQ
Sbjct: 259 EGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQ 318
Query: 373 VRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 416
RY E++ +S LD++L L + AMG R+
Sbjct: 319 DRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
pdb|3N9I|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Yersinia Pestis Co92
Length = 346
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 210/357 (58%), Gaps = 17/357 (4%)
Query: 61 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 120
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 121 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 180
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 181 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 240
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N
Sbjct: 121 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 241 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKD 299
IFK+PEP IP AGARVMSL D KMSKS + + I LL DPK
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 300 VIANKIKRCKTDSS--AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFK 357
V+ KIKR TDS A + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 228 VV-KKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLK 286
Query: 358 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 414
+ DA+ L +Q RY D A L V+ TL VY+A+GF+
Sbjct: 287 GAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFV 343
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 198/340 (58%), Gaps = 15/340 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS A
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGA--AAAA 119
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFN------------KRYGE 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1I6L|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
Length = 328
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 148/341 (43%), Positives = 194/341 (56%), Gaps = 15/341 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 416
+S LD+VL + QA G RR
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|B Chain B, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|C Chain C, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|D Chain D, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|E Chain E, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|F Chain F, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|G Chain G, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|H Chain H, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|I Chain I, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|J Chain J, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|K Chain K, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|L Chain L, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|M Chain M, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|N Chain N, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|O Chain O, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|P Chain P, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|Q Chain Q, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
pdb|3FI0|R Chain R, Crystal Structure Analysis Of B. Stearothermophilus
Tryptophanyl-Trna Synthetase Complexed With Tryptophan,
Amp, And Inorganic Phosphate
Length = 326
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 193/340 (56%), Gaps = 15/340 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W L IG L + QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWXLQCIVYIGELERXTQFKEKS--AGKEAVS 119
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP L A+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 120 AGLLTYPPLXAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE------------ 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+ SL D K SKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKKXSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
+S LD+VL + QA G R
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGR 326
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Vibrio Cholerae With An Endogenous Tryptophan
Length = 341
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 206/351 (58%), Gaps = 15/351 (4%)
Query: 70 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 129
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 130 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 189
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARY 120
Query: 190 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXX 249
+ V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N
Sbjct: 121 AND-VNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFN---------NI 170
Query: 250 XXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL-DPKDVIANKIKRC 308
IF +PEP IP ARVMSL D KMSKS + ++ I LL DPK +I KI +
Sbjct: 171 YSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSII-KKINKA 229
Query: 309 KTDSSAG--LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN-WGTFKPLLTDALI 365
+TD+ + +D + NL+ +Y +GKT E+ + + +G FK + +A++
Sbjct: 230 QTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVV 289
Query: 366 EHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 416
L P+Q Y+ I +D YL+ V+ TL VY A+GF+ R
Sbjct: 290 AMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 141/340 (41%), Positives = 185/340 (54%), Gaps = 42/340 (12%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 204
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 205 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 260
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 261 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 299
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/340 (40%), Positives = 184/340 (54%), Gaps = 45/340 (13%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERM--------------VS 107
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 108 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 153
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 154 -FTIPE------ARRIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 201
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 202 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 257
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 258 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 296
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 181/340 (53%), Gaps = 49/340 (14%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK--------- 200
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 201 -------SPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 253
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 254 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 292
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 180/340 (52%), Gaps = 55/340 (16%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 109
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER
Sbjct: 110 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAER------------------- 150
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 151 FFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSA------- 203
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+NLL+IY +SG++ E+ + FK L +IE L PIQ RY
Sbjct: 204 ----------ISNLLNIYSTLSGQSIEELERQY------VFKADLAQVVIETLRPIQERY 247
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 248 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 286
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|B Chain B, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|C Chain C, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
pdb|3U1V|D Chain D, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29,
Northeast Structural Genomics Consortium Target Or52
Length = 338
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/341 (38%), Positives = 179/341 (52%), Gaps = 15/341 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I S + PTG I +G Y+GA++ ++ LQ+ Y F I D AIT+ D +L + R
Sbjct: 2 KTIFSAICPTGVITIGRYIGALRQFVELQHEYNCYFCIADQSAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+ S V AH + W L IG L + FKE S AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIASEVPAHAQAAWXLQCIVYIGELERXTLFKELS--AGKEAVS 119
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLT+P + A+ ILLY +D VPVGE KQ ELTR+LAER N
Sbjct: 120 AGLLTHPPIYAAXILLYNTDIVPVGEYGKQLYELTRDLAERFNKRYGE------------ 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+ SL D +S P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIXSLVDPTKSXYQSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 416
+S LD+VL + QA G RR
Sbjct: 288 HH-WXESEELDRVLDEGAEKANRVASEXVRKXEQAXGLGRR 327
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 181/340 (53%), Gaps = 50/340 (14%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
F +PE R+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPE--------RIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 196
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 197 ----TIRYPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 252
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 253 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 291
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
pdb|2EL7|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Thermus Thermophilus
Length = 337
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/346 (39%), Positives = 188/346 (54%), Gaps = 26/346 (7%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLP--YDTQQLSKA 131
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P YD L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASKQ-- 119
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXX 251
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLFGET------- 172
Query: 252 XXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311
F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 173 -----FPEPQALLNPEAPRVPGI-DGKAKMSKSL---GNTIGLLEPEESIWQKIQHLPDD 223
Query: 312 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGTF--KPLLTDALIEHL 368
+ + PE L + + K E + EE + GT+ K +L D L+E L
Sbjct: 224 PQR-IRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 369 HPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 414
PI+ R E + D Y+ L T+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLL 328
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 175/340 (51%), Gaps = 62/340 (18%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+Q +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQT-----IGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 56
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M Q V
Sbjct: 57 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQ------------VS 104
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 105 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY-------------- 150
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK SS G
Sbjct: 151 -FTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIK-----SSEG 204
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
P +NLL+IY + G FK L +IE L PIQ RY
Sbjct: 205 T-------PGISNLLNIYSTL-----------------GVFKADLAQVVIETLRPIQERY 240
Query: 376 EEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLR 415
M +S LD+VL + + QAMG R
Sbjct: 241 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 279
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
pdb|2YY5|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Mycoplasma Pneumoniae
Length = 348
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 169/323 (52%), Gaps = 26/323 (8%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L + +
Sbjct: 5 KRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDL 64
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA-----G 190
LA G+D KA +F+QS + H + +L+ + +G L +M QFK K + G
Sbjct: 65 VRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNG 124
Query: 191 GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXX 250
N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 125 TLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLK------ 178
Query: 251 XXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 310
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++ T
Sbjct: 179 ------LRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATT 232
Query: 311 DSSAGLEFDNLERPECNNLLSIY---------QLISGKTKGEVAEECQNMNWGTFKPLLT 361
DS + F + +P N+L+I Q ++ + ++ ++ K LT
Sbjct: 233 DSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALT 292
Query: 362 DALIEHLHPIQVRYEEIMSDSAY 384
+A + L IQ + E+I + +
Sbjct: 293 EATVNLLVNIQRKREQISREQVF 315
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3M5W|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni
pdb|3TZL|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
pdb|3TZL|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Campylobacter Jejuni Complexed With Adp And Tryptophane
Length = 322
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/342 (30%), Positives = 174/342 (50%), Gaps = 31/342 (9%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 136
R+++G+QP+G +H+GNY GAIK + Q + FI + HA T D ++L + + + A
Sbjct: 5 RVLTGLQPSGDLHIGNYFGAIKQXVDAQEKSQXFXFIANYHAXTSSQDGEKLKQNSLKAA 64
Query: 137 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 196
A +L+ GID K+ ++QS V+ EL W+LS TP G L + +K+K A G +
Sbjct: 65 AAFLSLGIDPQKSVFWLQSDVKEVXELYWILSQFTPXGLLERAHSYKDKV--AKGLSASH 122
Query: 197 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXAI 256
L +YPVL A+DILL+ + VPVG+DQ QH+E+ R++A +VN I
Sbjct: 123 GLFSYPVLXAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWGE------------I 170
Query: 257 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGL 316
F +PE + A V+ TDG +K + S Q+ I++ + + +I TDS+A
Sbjct: 171 FTLPEARVNEEVAVVVG-TDG----AKXSKSYQNTIDIFSSEKTLKKQISSIVTDSTA-- 223
Query: 317 EFDNLERP---ECNNLLSIYQLI---SGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 370
LE P E N+ I +L SG+ + ++ E +G FK L + + +
Sbjct: 224 ----LEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE 279
Query: 371 IQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMG 412
+ +Y E++ ++L ++L +Y+ +G
Sbjct: 280 AREKYNELLEKPSHLKEILDFGATKARKIAQEKXQKIYEKIG 321
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec
6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 175/347 (50%), Gaps = 30/347 (8%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD-TQQLSKATRE 134
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T YD +L + TR+
Sbjct: 14 RILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRD 73
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 194
+LACGID K+ +FVQS V+ H EL L S + L ++ +KE + +++
Sbjct: 74 LVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYKDL 133
Query: 195 GVA-LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXX 253
A L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R N
Sbjct: 134 STAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFN------------YLY 181
Query: 254 XAIFKVPEPLIPPAGARVMSL--TDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311
+F PE ++ +RV L TDG KMSKS + INL + + I R TD
Sbjct: 182 DEVFPEPEAIL----SRVPKLPGTDG-RKMSKSY---GNIINLEISEKELEQTILRMMTD 233
Query: 312 SSAGLEFDNLERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWGTF--KPLLTDALIEH 367
A + + PE + +Q IS + V E C + G K LL +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 368 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFL 414
L PI + +I D Y+D V+ T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|B Chain B, Structure Of Trprs Ii Bound To Atp
pdb|2A4M|C Chain C, Structure Of Trprs Ii Bound To Atp
Length = 331
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 145/343 (42%), Gaps = 24/343 (6%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATR 133
+ R+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+ +
Sbjct: 2 RPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVL 61
Query: 134 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGE 192
A YLA G+D K + VQS V EL + + L + K E + K GE
Sbjct: 62 AVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGE 121
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXX 252
V YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 122 RVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ- 180
Query: 253 XXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 312
+ +VP R+ L DG +KMSKS + I L D D +A K+ TD
Sbjct: 181 ---LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDP 224
Query: 313 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDALIEHL 368
L + R E N + + A + Q G K L D L L
Sbjct: 225 GH-LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVL 283
Query: 369 HPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 411
PI+ R E D + + + TL V +AM
Sbjct: 284 APIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 326
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|A Chain A, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YI8|C Chain C, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From
Deinococcus Radiodurans In Complex With L-Trp
pdb|1YIA|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YIA|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With 5-Hydroxy
Tryptophan.
pdb|1YID|B Chain B, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|A Chain A, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp.
pdb|1YID|C Chain C, Crystal Structure Of Tryptophanyl Trna Synthetase Ii From
Deinococcus Radiodurans In Complex With Atp
Length = 351
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 143/340 (42%), Gaps = 24/340 (7%)
Query: 78 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYD-TQQLSKATRETA 136
+++G +PTG++HLG+ G+++N + LQ+ E + D+ A+T +D +Q+ + A
Sbjct: 25 VLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVA 84
Query: 137 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK-EKSHKAGGENVG 195
YLA G+D K + VQS V EL + + L + K E + K GE V
Sbjct: 85 LDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVP 144
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXXXXXXXXA 255
YPV A+DI + + VPVG+DQ LE TRE+ R N
Sbjct: 145 AGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQ---- 200
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+ +VP R+ L DG +KMSKS + I L D D +A K+ TD
Sbjct: 201 LSRVP---------RLPGL-DGQAKMSKSL---GNAIALGDSADEVARKVMGMYTDPGH- 246
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG----TFKPLLTDALIEHLHPI 371
L + R E N + + A + Q G K L D L L PI
Sbjct: 247 LRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPI 306
Query: 372 QVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAM 411
+ R E D + + + TL V +AM
Sbjct: 307 RTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAM 346
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1
pdb|3A05|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From
Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Complex
With Tryptophan
Length = 372
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 101/267 (37%), Gaps = 57/267 (21%)
Query: 69 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-NSYETLFFIVDLHAITLPY--DT 125
A + + +++G P+G H G+ L + I LQ N ++ I D A +
Sbjct: 64 AKARGERVAVLTGFMPSGKFHFGHKL-TVDQLIYLQKNGFKVFVAIADAEAFAVRRIGRE 122
Query: 126 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 185
+ + A E A +A G+D + Q+ + TP ++IQ
Sbjct: 123 EAVRIAVEEYIANMIALGLDPKDTEFYFQT------------NRGTP---YFRLIQLFSG 167
Query: 186 SHKAGGENVGVALLTYPVLMAS-----DILLYQSD--------FVPVGEDQKQHLELTRE 232
A LT +MAS DIL Q D VPVG DQ HL LTR+
Sbjct: 168 KVTAAEMEAIYGELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRD 227
Query: 233 LAERVNXXXXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLS--KMSKSAPSDQS 290
LA+R+ + ++ P + L GL KMS S P S
Sbjct: 228 LADRM----------------AGVVELERP-----ASTYHKLQPGLDGRKMSSSRPD--S 264
Query: 291 RINLLDPKDVIANKIKRCKTDSSAGLE 317
I L DP +V NK+ R T A E
Sbjct: 265 TIFLTDPPEVARNKLFRALTGGRATAE 291
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 6/161 (3%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT-QQLSKAT 132
K R G +P+G IHLG+ + ++ + LQ + +E + + D+HA T +++++
Sbjct: 32 KPRAYVGYEPSGEIHLGHMM-TVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVA 90
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGG 191
+++A G+D S+A + S + + + + I LN+ + E S +
Sbjct: 91 DYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRK-- 148
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 232
E+ V+ + YP++ A DI D G DQ++ L RE
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARE 189
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 139 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE----DENPK 145
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
VA + YP++ +DI D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 132
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIILADLHAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 189
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSEFMLDKDYTLNVYRLALKTTLKRARRSMELIARED-- 141
Query: 190 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
EN VA + YP++ + I D G +Q++ L REL
Sbjct: 142 --ENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKIHMLAREL 183
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 132
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKA 189
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARED-- 141
Query: 190 GGENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 233
EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 142 --ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 132
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKA 189
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSSFQLDKDYTLNVYRLALKTTLKRARRSMELIARE--- 140
Query: 190 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
EN VA + YP++ + D V G +Q++ L REL
Sbjct: 141 -DENPKVAEVIYPIMQVNPAHYQGVDVVVGGMEQRKIHMLAREL 183
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 102/251 (40%), Gaps = 38/251 (15%)
Query: 77 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAI---TLPYDTQQLSKAT 132
R G +P+G +H+ A+ E +F++ D A+ + + +++
Sbjct: 42 RCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVG 101
Query: 133 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
R ++ A G+D K S + +H + W + IG N + + K K G
Sbjct: 102 RYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRM--VLDIGRQNTIARIK-KCCTIMG 158
Query: 192 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 248
+ G A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKL------- 211
Query: 249 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK-- 306
+P+I + + L G +KMSKS P S I + D ++ +A KI+
Sbjct: 212 ------------KPVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQA 256
Query: 307 ---RCKTDSSA 314
R K +SA
Sbjct: 257 YCPRVKQSASA 267
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 13/158 (8%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 139 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSTFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
VA + YP++ + I D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNAIHYPGVDVAVGGMEQRKIHMLAREL 183
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 132
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K
Sbjct: 28 EKSALIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKA 189
++ A G+ KA S + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED-- 141
Query: 190 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 --ENPKVAEVIYPIMQVNGCHYRGVDVAVGGMEQRKIHMLAREL 183
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 33 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIGDYNKKV 91
Query: 139 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 92 FEAMGL---KAKYVYGSPFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 144
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
VA + YP++ + D G +Q++ L REL
Sbjct: 145 VAEVIYPIMQVNTSHRLGVDVAVGGMEQRKIHMLAREL 182
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 21/162 (12%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIVLADLHAYLNQKGELDEIRKIGDYNKKV 92
Query: 139 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-------G 191
+ A G+ KA S W+L + ++ K +
Sbjct: 93 FEAMGL---KAKYVYGSE--------WMLDKDYTLNVYRLALKTTLKRARRSMELIARED 141
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
EN VA + YP++ + D G +Q++ L REL
Sbjct: 142 ENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 132
+K + G +P+G IHLG+YL IK I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAIIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLFAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHV--RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 190
++ A G+ V+ S + + + ++ L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGL--KAKYVYGSSFMLDKDYTLNVYRLALKTTLKRARRSMELIARED--- 141
Query: 191 GENVGVALLTYPVLMASDILLYQSDFVPVG--EDQKQHLELTREL 233
EN VA + YP+ M + L Y+ V VG E +K H+ L REL
Sbjct: 142 -ENPKVAEVIYPI-MQVNPLHYEGVDVAVGGMEQRKIHM-LAREL 183
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 44/254 (17%)
Query: 80 SGVQPTGSIHLGNYLGAIKNW-IALQNSYETLFFIVDLHA---ITLPYDTQQLSKATRET 135
+G +P+G IH+ L + N ++ + + +I D A + + D ++ + R
Sbjct: 45 NGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYF 104
Query: 136 AAIYLACGI--DNSK---ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 190
++ ACGI D ++ AS F+ S+ +++E M ++ + I + + Q ++
Sbjct: 105 IEVFKACGINLDGTRFIWASEFIASN-PSYIERMLDIAEFSTISRVKRCCQIMGRNE--- 160
Query: 191 GENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 247
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 161 SDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRG--------- 211
Query: 248 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 307
K+P I + +MSL+ KMSKS P Q I + D + ++ KI R
Sbjct: 212 ---------LKIP---ISLSHHMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEVSEKISR 257
Query: 308 CK-TDSSAGLEFDN 320
TD + FDN
Sbjct: 258 AYCTDET----FDN 267
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 40/247 (16%)
Query: 74 VKKRIV--SGVQPTGSIHLGNYLGAIKNWIA---LQNSYETLFFIVDLHA---ITLPYDT 125
+K++++ G +P+G +H+ G +K+ I N +F+I D A + D
Sbjct: 53 LKRKLICYDGFEPSGRMHIAQ--GLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDL 110
Query: 126 QQLSKATRETAAIYLACGIDNSK-----ASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 180
+++ K ++ +CG++ AS + + L+ +S + I + + +
Sbjct: 111 KKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCL 170
Query: 181 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXX 240
+ +S G EN +L YP + +DI D +G DQ++ L RE +
Sbjct: 171 KIMGRSE--GEENYCSQIL-YPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIK 227
Query: 241 XXXXXXXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 300
P+I G + L +G KMSKS + S I + D +
Sbjct: 228 KK-------------------PVILSHGM-LPGLLEGQEKMSKS--DENSAIFMDDSESD 265
Query: 301 IANKIKR 307
+ KIK+
Sbjct: 266 VNRKIKK 272
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 13/158 (8%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+YL IK I LQN+ ++ + ++ DL A + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIIYLADLAAYLNQKGELDEIRKIGDYNKKV 92
Query: 139 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
VA + YP++ + D G +Q++ L REL
Sbjct: 146 VAEVIYPIMEVNGWHYSGVDVAVGGMEQRKIHMLAREL 183
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+YL IK I LQN+ ++ + + DL A + + ++ K +
Sbjct: 34 GFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKV 92
Query: 139 YLACGIDNSKASVFVQSHVRAHVEL---MWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
+ A G+ KA S + + ++ L+ T + + ++ + EN
Sbjct: 93 FEAMGL---KAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARED----ENPK 145
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
VA + YP++ + D G +Q++ L REL
Sbjct: 146 VAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLAREL 183
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 33/239 (13%)
Query: 77 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAIT---LPYDTQQLSKAT 132
R G +P+G H+ A+ E +F++ D A+ + + +++
Sbjct: 42 RCYDGFEPSGRXHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALXNDKVGGELEKIRIVG 101
Query: 133 RETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
R ++ A G D K S + +H + W IG N + + K K G
Sbjct: 102 RYLIEVWKAAGXDXDKVLFLWSSEEITSHADTYW--RXVLDIGRQNTIARIK-KCCTIXG 158
Query: 192 ENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXXX 248
+ G A + YP+ DI ++D +G DQ++ L RE + +
Sbjct: 159 KTEGTLTAAQVLYPLXQCCDIFFLKADICQLGLDQRKVNXLAREYCDLIGRKL------- 211
Query: 249 XXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 307
+P+I + + L G +K SKS P S I D ++ +A KI++
Sbjct: 212 ------------KPVI-LSHHXLAGLKQGQAKXSKSDPD--SAIFXEDTEEDVARKIRQ 255
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 78 IVSGVQPT-GSIHLGNYL---------GAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 127
I +G P+ G++HLG+ L A K ++ +Q + + F L +L Y +
Sbjct: 94 IYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKF----LRNRSLSY--AE 147
Query: 128 LSKATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKE 184
+ TRE +ACG D K +F+ S ++ L+ PI L F
Sbjct: 148 VDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSN 207
Query: 185 KSHKAGGENVGVA 197
+ NVG A
Sbjct: 208 DA------NVGYA 214
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 20/191 (10%)
Query: 59 VSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLG--NYLGAIKNWIALQNSYETL-----F 111
V+ E +AS + +K I G +P+G H+G ++ +K+ + + L
Sbjct: 21 VTEEELKGLLASGARIKGYI--GYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHA 78
Query: 112 FIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLL---- 167
+I D L D + A R + A G+ + FV + A + W L
Sbjct: 79 YIND----KLGGDMDLIRAAARIVRRVMEAAGVPVERVR-FVDAEELASDKDYWGLVIRV 133
Query: 168 SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 227
+ + + + + +A V + L YP++ SDI D G DQ++
Sbjct: 134 AKRASLARVRRALTIM--GRRAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAH 191
Query: 228 ELTRELAERVN 238
L R++AE++
Sbjct: 192 MLARDVAEKLG 202
>pdb|3LY7|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc
pdb|3LYA|A Chain A, Crystal Structure Of The Periplasmic Domain Of Cadc In The
Presence Of K2recl6
Length = 372
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 317 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 354
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY9|A Chain A, Crystal Structure Of Mutant D471n Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 317 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 354
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|3LY8|A Chain A, Crystal Structure Of Mutant D471e Of The Periplasmic
Domain Of Cadc
Length = 372
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 317 EFDNL-ERPECNNLLSIYQL--ISGKTKGEVAEECQNMNWG 354
E DN+ PE NNL IYQ+ +S KG+ E Q +N G
Sbjct: 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 25/203 (12%)
Query: 57 CNVSLSEPTAPVASSSSVKKRI--------VSGVQPTGSIHLGNYLGAIKNWIALQNS-Y 107
N+ L +PT V + +++ G + +G IHLG L A Q +
Sbjct: 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGI 66
Query: 108 ETLFFIVDLHAITLPYDTQQLS---KATRETAAIYLACGIDNS---------KASVFVQS 155
+T F+ D H+ + +L + +E A Y G++ S K + S
Sbjct: 67 KTRVFLADWHS----WINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLAS 122
Query: 156 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSD 215
+ + + + L+++++ + GE + A L YP++ +DI
Sbjct: 123 EILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQGVT 182
Query: 216 FVPVGEDQKQHLELTRELAERVN 238
G DQ++ + E+A+++
Sbjct: 183 IAHAGMDQRKAHVIAIEVAQKLR 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,362,453
Number of Sequences: 62578
Number of extensions: 379938
Number of successful extensions: 916
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 47
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)