Query 014899
Match_columns 416
No_of_seqs 188 out of 1362
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 2E-102 3E-107 788.9 38.8 341 75-415 46-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 7E-100 2E-104 724.7 30.3 331 75-416 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 4.9E-95 1.1E-99 739.2 35.3 321 75-414 2-332 (431)
4 PRK00927 tryptophanyl-tRNA syn 100.0 9.9E-94 2.2E-98 718.5 35.1 327 76-415 2-332 (333)
5 PRK12556 tryptophanyl-tRNA syn 100.0 1.6E-93 3.4E-98 715.5 34.8 320 75-414 3-332 (332)
6 PRK12283 tryptophanyl-tRNA syn 100.0 2.2E-92 4.8E-97 714.5 35.6 333 76-415 3-398 (398)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 4.3E-91 9.4E-96 686.2 28.7 305 74-395 4-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 4.3E-90 9.3E-95 691.3 35.2 324 75-415 2-331 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 7.4E-88 1.6E-92 674.4 32.8 319 74-413 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 1.6E-74 3.5E-79 567.1 27.1 274 77-367 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 8.3E-74 1.8E-78 579.6 28.3 286 74-392 65-365 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 1.2E-69 2.6E-74 543.7 25.5 268 74-378 29-323 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.8E-68 3.8E-73 542.9 26.6 269 74-378 65-366 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.6E-65 3.5E-70 549.4 28.0 281 74-378 31-340 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 2.2E-60 4.7E-65 483.0 28.7 275 74-379 72-369 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 1.4E-60 3E-65 470.5 17.6 275 74-369 4-292 (292)
17 cd00395 Tyr_Trp_RS_core cataly 100.0 1.2E-58 2.5E-63 453.3 25.8 248 77-367 1-273 (273)
18 cd00805 TyrRS_core catalytic c 100.0 4.3E-59 9.3E-64 455.6 21.7 249 76-367 1-269 (269)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 6E-51 1.3E-55 418.7 24.2 257 74-373 32-313 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 7.5E-48 1.6E-52 395.6 23.1 258 74-375 32-313 (410)
21 KOG2144 Tyrosyl-tRNA synthetas 100.0 3.8E-48 8.1E-53 370.7 18.4 267 74-378 33-334 (360)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 9.8E-44 2.1E-48 362.0 20.4 242 75-370 30-294 (377)
23 KOG2145 Cytoplasmic tryptophan 100.0 2.7E-44 5.9E-49 344.3 12.5 276 74-380 84-383 (397)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 4.1E-40 8.8E-45 353.7 23.9 226 106-376 407-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 2.2E-35 4.7E-40 300.6 20.0 271 75-379 32-358 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.7 3.1E-17 6.6E-22 163.9 16.3 257 75-371 63-352 (467)
27 cd00808 GluRS_core catalytic c 99.6 4E-15 8.6E-20 143.4 11.7 168 83-307 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.4 8.2E-13 1.8E-17 117.1 11.4 63 201-285 78-143 (143)
29 cd00418 GlxRS_core catalytic c 98.8 2.1E-08 4.6E-13 96.3 10.9 168 83-306 9-181 (230)
30 cd00674 LysRS_core_class_I cat 98.6 5.7E-07 1.2E-11 91.6 13.0 81 75-158 20-130 (353)
31 PRK00750 lysK lysyl-tRNA synth 98.5 8.8E-07 1.9E-11 94.5 11.7 65 212-302 233-304 (510)
32 PRK05710 glutamyl-Q tRNA(Asp) 98.3 2.8E-06 6.2E-11 84.7 9.4 173 83-285 13-241 (299)
33 PRK14895 gltX glutamyl-tRNA sy 98.2 4.7E-05 1E-09 81.0 15.5 197 77-307 4-269 (513)
34 TIGR00464 gltX_bact glutamyl-t 98.2 0.00021 4.5E-09 75.7 20.3 191 83-307 9-270 (470)
35 cd02156 nt_trans nucleotidyl t 98.1 1.3E-05 2.8E-10 67.5 8.6 56 78-137 2-57 (105)
36 PRK01406 gltX glutamyl-tRNA sy 97.9 6.7E-05 1.4E-09 79.6 11.6 192 83-306 12-279 (476)
37 PLN02627 glutamyl-tRNA synthet 97.9 0.0023 4.9E-08 68.6 21.4 97 77-179 47-159 (535)
38 TIGR00467 lysS_arch lysyl-tRNA 97.8 0.00012 2.5E-09 78.4 11.6 80 75-157 19-128 (515)
39 TIGR03838 queuosine_YadB gluta 97.8 0.00029 6.4E-09 69.5 12.0 174 83-286 8-235 (272)
40 cd09287 GluRS_non_core catalyt 97.7 0.00016 3.5E-09 70.1 9.6 161 80-285 6-171 (240)
41 cd00807 GlnRS_core catalytic c 97.7 0.00023 4.9E-09 68.9 9.2 154 83-286 9-170 (238)
42 cd00668 Ile_Leu_Val_MetRS_core 97.6 0.00041 8.8E-09 69.4 11.2 63 84-147 11-100 (312)
43 COG0008 GlnS Glutamyl- and glu 97.6 0.00028 6E-09 74.7 9.2 179 78-286 10-256 (472)
44 PF01921 tRNA-synt_1f: tRNA sy 97.5 0.00066 1.4E-08 69.3 10.4 69 210-303 231-307 (360)
45 PRK12410 glutamylglutaminyl-tR 97.4 0.00065 1.4E-08 71.2 10.0 89 83-179 7-104 (433)
46 PLN03233 putative glutamate-tR 97.4 0.00077 1.7E-08 72.0 10.7 94 77-177 11-114 (523)
47 PRK00260 cysS cysteinyl-tRNA s 97.4 0.013 2.8E-07 62.1 19.2 73 75-147 23-110 (463)
48 PRK12558 glutamyl-tRNA synthet 97.4 0.0014 3E-08 69.0 11.1 88 83-178 10-106 (445)
49 PTZ00402 glutamyl-tRNA synthet 97.3 0.0015 3.2E-08 70.7 10.7 178 77-285 52-293 (601)
50 COG1384 LysS Lysyl-tRNA synthe 97.3 0.003 6.5E-08 66.8 12.6 81 74-157 19-131 (521)
51 PF00749 tRNA-synt_1c: tRNA sy 97.2 0.0029 6.4E-08 63.7 11.5 174 83-286 9-249 (314)
52 PRK04156 gltX glutamyl-tRNA sy 97.2 0.0028 6E-08 68.5 11.9 180 76-285 102-343 (567)
53 cd00671 ArgRS_core catalytic c 97.2 0.0013 2.9E-08 62.2 8.5 150 79-238 6-184 (212)
54 PRK01611 argS arginyl-tRNA syn 97.2 0.00097 2.1E-08 71.3 7.7 192 78-300 116-339 (507)
55 cd00812 LeuRS_core catalytic c 97.0 0.0027 5.8E-08 63.8 8.7 78 84-162 11-101 (314)
56 PLN02907 glutamate-tRNA ligase 97.0 0.0045 9.7E-08 68.9 11.0 94 77-177 213-316 (722)
57 cd00672 CysRS_core catalytic c 96.9 0.0089 1.9E-07 57.0 11.1 71 76-146 22-105 (213)
58 PLN02859 glutamine-tRNA ligase 96.8 0.0049 1.1E-07 68.6 9.5 93 78-177 265-367 (788)
59 PRK05347 glutaminyl-tRNA synth 95.6 0.05 1.1E-06 58.7 9.1 94 78-177 30-133 (554)
60 TIGR00463 gltX_arch glutamyl-t 95.3 0.049 1.1E-06 59.0 7.8 94 76-177 92-196 (560)
61 PTZ00437 glutaminyl-tRNA synth 95.3 0.056 1.2E-06 58.4 8.0 93 77-177 51-154 (574)
62 TIGR00435 cysS cysteinyl-tRNA 95.3 0.2 4.3E-06 53.3 12.1 73 76-148 23-108 (465)
63 TIGR00440 glnS glutaminyl-tRNA 95.2 0.074 1.6E-06 57.1 8.5 90 83-178 8-105 (522)
64 PRK14703 glutaminyl-tRNA synth 94.7 0.12 2.6E-06 58.1 8.8 95 77-178 31-136 (771)
65 PLN02224 methionine-tRNA ligas 93.8 0.45 9.7E-06 52.4 10.8 94 51-147 49-156 (616)
66 TIGR00234 tyrS tyrosyl-tRNA sy 91.5 0.52 1.1E-05 48.8 7.2 19 324-342 280-298 (377)
67 PRK00133 metG methionyl-tRNA s 91.2 0.68 1.5E-05 51.5 8.1 83 75-160 3-99 (673)
68 PRK12268 methionyl-tRNA synthe 90.4 0.77 1.7E-05 49.6 7.6 72 76-148 4-92 (556)
69 COG0143 MetG Methionyl-tRNA sy 89.6 1.1 2.4E-05 48.7 7.9 81 77-160 8-102 (558)
70 PF09334 tRNA-synt_1g: tRNA sy 89.4 1.1 2.3E-05 46.7 7.4 75 83-160 9-96 (391)
71 PLN02610 probable methionyl-tR 86.9 1.6 3.4E-05 49.7 7.2 84 75-161 18-116 (801)
72 PRK05743 ileS isoleucyl-tRNA s 85.3 0.62 1.3E-05 53.6 3.0 58 211-294 543-603 (912)
73 cd00818 IleRS_core catalytic c 82.9 1 2.2E-05 45.8 3.1 36 84-119 12-52 (338)
74 KOG1147 Glutamyl-tRNA syntheta 82.2 3.5 7.6E-05 44.4 6.7 73 77-158 200-276 (712)
75 PRK00390 leuS leucyl-tRNA synt 82.2 3.6 7.8E-05 46.8 7.4 72 75-147 33-119 (805)
76 PRK11893 methionyl-tRNA synthe 81.5 0.69 1.5E-05 49.2 1.3 64 84-147 12-88 (511)
77 cd00817 ValRS_core catalytic c 81.1 1 2.2E-05 46.6 2.3 36 84-119 12-52 (382)
78 cd00814 MetRS_core catalytic c 81.1 3.3 7.2E-05 41.6 6.0 65 84-148 11-88 (319)
79 TIGR00456 argS arginyl-tRNA sy 81.0 1.2 2.6E-05 48.5 2.9 63 215-303 330-392 (566)
80 PRK12300 leuS leucyl-tRNA synt 80.8 0.92 2E-05 52.1 2.1 58 212-295 529-589 (897)
81 PRK14900 valS valyl-tRNA synth 80.5 1.3 2.9E-05 51.7 3.3 61 212-296 490-551 (1052)
82 PRK11893 methionyl-tRNA synthe 80.5 6.6 0.00014 41.8 8.3 60 212-296 253-312 (511)
83 PRK12267 methionyl-tRNA synthe 79.7 4.4 9.5E-05 44.8 6.8 65 84-148 15-92 (648)
84 COG0495 LeuS Leucyl-tRNA synth 79.2 3.6 7.8E-05 46.7 6.0 77 74-152 34-126 (814)
85 TIGR00398 metG methionyl-tRNA 78.5 4 8.6E-05 43.9 5.9 65 84-148 10-87 (530)
86 TIGR00395 leuS_arch leucyl-tRN 77.8 1.4 2.9E-05 51.0 2.2 70 212-307 572-649 (938)
87 TIGR00392 ileS isoleucyl-tRNA 77.5 1.6 3.4E-05 49.9 2.7 58 212-295 563-623 (861)
88 PRK12267 methionyl-tRNA synthe 75.5 18 0.00038 40.1 10.1 59 213-296 254-312 (648)
89 PRK12418 cysteinyl-tRNA synthe 74.6 3.2 7E-05 43.2 3.8 70 202-295 203-273 (384)
90 PRK05729 valS valyl-tRNA synth 74.4 2.1 4.5E-05 49.1 2.6 61 212-296 472-533 (874)
91 TIGR00396 leuS_bact leucyl-tRN 73.5 7.1 0.00015 44.7 6.5 71 76-147 31-116 (842)
92 cd00818 IleRS_core catalytic c 73.4 7.9 0.00017 39.3 6.2 58 212-295 251-311 (338)
93 PRK13804 ileS isoleucyl-tRNA s 73.0 2.1 4.6E-05 49.6 2.2 16 210-225 580-595 (961)
94 cd00817 ValRS_core catalytic c 72.1 5 0.00011 41.5 4.5 60 212-295 295-355 (382)
95 PF00133 tRNA-synt_1: tRNA syn 71.9 2.9 6.3E-05 45.8 2.9 60 212-294 513-572 (601)
96 PRK13208 valS valyl-tRNA synth 71.5 3.5 7.6E-05 46.8 3.4 59 213-295 486-545 (800)
97 cd00814 MetRS_core catalytic c 70.4 3.1 6.6E-05 41.8 2.4 58 213-295 235-292 (319)
98 PRK14536 cysS cysteinyl-tRNA s 70.3 27 0.00059 37.6 9.6 74 74-147 22-119 (490)
99 TIGR00422 valS valyl-tRNA synt 69.6 3.7 8E-05 47.0 3.1 61 212-296 477-538 (861)
100 PRK06039 ileS isoleucyl-tRNA s 68.9 3.9 8.5E-05 47.5 3.2 15 211-225 543-557 (975)
101 PLN02959 aminoacyl-tRNA ligase 68.0 4.8 0.0001 47.4 3.6 61 212-295 670-730 (1084)
102 PLN02943 aminoacyl-tRNA ligase 67.9 4.7 0.0001 46.8 3.5 77 196-296 518-596 (958)
103 TIGR03447 mycothiol_MshC cyste 67.2 4.9 0.00011 42.2 3.2 71 75-145 36-120 (411)
104 PLN02843 isoleucyl-tRNA synthe 66.2 4.1 9E-05 47.3 2.7 16 210-225 561-576 (974)
105 PRK14535 cysS cysteinyl-tRNA s 65.8 29 0.00062 38.9 8.8 75 74-148 247-335 (699)
106 PLN02381 valyl-tRNA synthetase 65.5 5 0.00011 47.1 3.1 60 212-295 607-667 (1066)
107 PTZ00419 valyl-tRNA synthetase 65.5 5.8 0.00012 46.2 3.7 61 211-295 536-597 (995)
108 PF01406 tRNA-synt_1e: tRNA sy 64.0 6 0.00013 39.9 3.0 68 203-295 196-264 (300)
109 PLN02660 pantoate--beta-alanin 63.4 21 0.00045 35.8 6.6 69 212-310 145-213 (284)
110 PLN02286 arginine-tRNA ligase 62.2 8.9 0.00019 42.0 4.2 67 214-300 329-395 (576)
111 PRK12268 methionyl-tRNA synthe 60.7 5.7 0.00012 43.0 2.3 57 215-295 289-346 (556)
112 PLN02882 aminoacyl-tRNA ligase 60.7 7.8 0.00017 46.0 3.6 76 194-293 547-624 (1159)
113 PLN02563 aminoacyl-tRNA ligase 60.7 6.6 0.00014 45.6 3.0 27 212-238 615-642 (963)
114 COG0018 ArgS Arginyl-tRNA synt 60.6 7.3 0.00016 42.7 3.1 69 214-305 336-405 (577)
115 cd02168 NMNAT_Nudix Nicotinami 59.2 39 0.00084 31.4 7.3 75 82-166 8-85 (181)
116 TIGR00396 leuS_bact leucyl-tRN 58.2 7.3 0.00016 44.6 2.8 25 212-236 519-544 (842)
117 PTZ00419 valyl-tRNA synthetase 57.8 14 0.0003 43.1 5.0 44 76-119 62-111 (995)
118 PTZ00399 cysteinyl-tRNA-synthe 57.7 4 8.6E-05 45.4 0.5 71 202-296 257-328 (651)
119 COG0495 LeuS Leucyl-tRNA synth 57.5 8.3 0.00018 43.9 3.0 64 213-296 526-592 (814)
120 PRK13208 valS valyl-tRNA synth 57.1 15 0.00032 41.8 5.0 72 76-147 40-138 (800)
121 COG0143 MetG Methionyl-tRNA sy 56.8 76 0.0016 34.8 10.0 32 257-296 315-346 (558)
122 PRK14536 cysS cysteinyl-tRNA s 56.6 7.3 0.00016 41.9 2.3 68 202-294 222-290 (490)
123 TIGR00398 metG methionyl-tRNA 55.4 8.6 0.00019 41.3 2.6 55 216-296 285-340 (530)
124 COG0215 CysS Cysteinyl-tRNA sy 52.5 7.6 0.00017 41.3 1.6 71 202-296 210-281 (464)
125 PLN02946 cysteine-tRNA ligase 51.1 7.2 0.00016 42.6 1.2 72 74-145 79-164 (557)
126 KOG0436 Methionyl-tRNA synthet 50.6 78 0.0017 33.7 8.4 65 82-146 48-125 (578)
127 PRK00390 leuS leucyl-tRNA synt 50.0 12 0.00026 42.6 2.8 25 212-236 522-547 (805)
128 PLN02843 isoleucyl-tRNA synthe 49.6 27 0.00059 40.7 5.6 73 76-148 34-136 (974)
129 PLN02946 cysteine-tRNA ligase 49.6 1.6E+02 0.0036 32.3 11.2 68 202-294 266-334 (557)
130 PF04048 Sec8_exocyst: Sec8 ex 49.1 1.9E+02 0.004 25.6 9.8 87 324-414 19-105 (142)
131 TIGR03447 mycothiol_MshC cyste 49.0 1E+02 0.0022 32.5 9.3 69 202-294 230-299 (411)
132 PF00750 tRNA-synt_1d: tRNA sy 48.7 8.9 0.00019 39.3 1.4 73 214-307 240-312 (354)
133 PRK00133 metG methionyl-tRNA s 48.6 10 0.00022 42.3 1.8 31 257-295 311-341 (673)
134 PRK12451 arginyl-tRNA syntheta 48.3 18 0.00039 39.5 3.7 62 214-300 326-388 (562)
135 KOG0433 Isoleucyl-tRNA synthet 47.9 1.2E+02 0.0025 34.6 9.6 53 358-410 703-775 (937)
136 PLN02563 aminoacyl-tRNA ligase 46.3 43 0.00093 39.1 6.5 72 76-147 112-198 (963)
137 TIGR00422 valS valyl-tRNA synt 45.6 13 0.00028 42.6 2.2 45 75-119 34-84 (861)
138 PLN02224 methionine-tRNA ligas 45.5 15 0.00033 40.6 2.7 60 212-296 320-379 (616)
139 KOG1149 Glutamyl-tRNA syntheta 45.4 38 0.00082 36.0 5.3 76 76-157 34-117 (524)
140 PF05957 DUF883: Bacterial pro 43.9 1.2E+02 0.0025 24.8 7.1 57 353-409 14-71 (94)
141 COG0525 ValS Valyl-tRNA synthe 42.6 16 0.00035 41.8 2.3 35 84-118 44-82 (877)
142 COG2442 Uncharacterized conser 41.6 66 0.0014 26.0 5.1 43 322-366 29-71 (79)
143 cd02166 NMNAT_Archaea Nicotina 41.3 1.3E+02 0.0028 27.2 7.6 65 82-157 8-77 (163)
144 PRK14534 cysS cysteinyl-tRNA s 41.0 1.4E+02 0.003 32.3 8.8 74 74-147 20-117 (481)
145 PRK05729 valS valyl-tRNA synth 39.8 18 0.00038 41.6 2.1 44 76-119 38-87 (874)
146 PRK14900 valS valyl-tRNA synth 39.5 19 0.0004 42.4 2.3 46 75-120 49-100 (1052)
147 PTZ00427 isoleucine-tRNA ligas 38.9 25 0.00055 42.0 3.2 34 194-227 652-687 (1205)
148 PF00133 tRNA-synt_1: tRNA syn 38.6 35 0.00075 37.5 4.1 45 76-120 25-75 (601)
149 TIGR00018 panC pantoate--beta- 38.3 1.3E+02 0.0029 30.0 7.8 69 212-310 142-210 (282)
150 TIGR00456 argS arginyl-tRNA sy 37.9 33 0.00071 37.5 3.7 41 77-117 116-162 (566)
151 PHA01929 putative scaffolding 37.5 2.3E+02 0.005 28.2 9.0 35 321-355 116-151 (306)
152 COG0018 ArgS Arginyl-tRNA synt 36.1 37 0.00079 37.4 3.7 41 79-119 123-169 (577)
153 PF00750 tRNA-synt_1d: tRNA sy 35.9 42 0.00092 34.3 4.0 38 79-116 26-69 (354)
154 PLN02381 valyl-tRNA synthetase 35.5 25 0.00054 41.5 2.5 44 76-119 130-179 (1066)
155 PF04255 DUF433: Protein of un 35.5 55 0.0012 24.3 3.5 38 322-361 17-54 (56)
156 PRK14534 cysS cysteinyl-tRNA s 33.9 22 0.00048 38.2 1.6 65 205-294 225-290 (481)
157 TIGR00392 ileS isoleucyl-tRNA 33.5 28 0.0006 40.0 2.4 45 75-119 37-87 (861)
158 PLN02610 probable methionyl-tR 33.5 17 0.00037 41.5 0.7 57 216-295 304-360 (801)
159 PF02662 FlpD: Methyl-viologen 32.7 1.8E+02 0.0039 25.3 6.8 71 80-156 32-103 (124)
160 PLN02943 aminoacyl-tRNA ligase 31.5 34 0.00073 39.9 2.7 45 76-120 90-140 (958)
161 PRK05743 ileS isoleucyl-tRNA s 30.8 31 0.00067 40.0 2.2 73 76-148 51-152 (912)
162 PRK10404 hypothetical protein; 29.7 2.5E+02 0.0054 23.7 6.9 56 354-409 22-78 (101)
163 TIGR00395 leuS_arch leucyl-tRN 28.3 32 0.00069 40.0 1.8 36 76-111 27-67 (938)
164 PF09334 tRNA-synt_1g: tRNA sy 27.9 17 0.00036 37.9 -0.5 54 216-294 285-338 (391)
165 PRK12451 arginyl-tRNA syntheta 27.1 58 0.0013 35.6 3.4 40 79-118 119-164 (562)
166 PRK14535 cysS cysteinyl-tRNA s 26.9 5.1E+02 0.011 29.4 10.5 33 202-236 435-468 (699)
167 COG3783 CybC Soluble cytochrom 26.7 1.2E+02 0.0025 25.7 4.3 42 369-410 53-94 (100)
168 COG0525 ValS Valyl-tRNA synthe 26.5 23 0.00051 40.6 0.3 21 270-295 517-537 (877)
169 PLN02286 arginine-tRNA ligase 26.4 51 0.0011 36.2 2.8 39 79-117 123-167 (576)
170 KOG1148 Glutaminyl-tRNA synthe 26.3 1.1E+02 0.0024 33.8 5.2 99 76-183 247-357 (764)
171 PF09551 Spore_II_R: Stage II 26.0 2.4E+02 0.0052 25.1 6.4 49 354-406 19-67 (130)
172 PRK01153 nicotinamide-nucleoti 25.0 2.9E+02 0.0062 25.4 7.1 26 82-114 9-35 (174)
173 PRK12418 cysteinyl-tRNA synthe 24.6 1.9E+02 0.0042 30.2 6.5 73 75-147 9-96 (384)
174 PF14842 FliG_N: FliG N-termin 23.8 1E+02 0.0022 26.0 3.7 69 330-399 24-94 (108)
175 PLN02959 aminoacyl-tRNA ligase 23.3 49 0.0011 39.2 2.1 28 84-111 56-87 (1084)
176 PRK06039 ileS isoleucyl-tRNA s 23.3 54 0.0012 38.3 2.4 45 75-119 42-92 (975)
177 KOG0432 Valyl-tRNA synthetase 23.3 59 0.0013 37.4 2.6 55 277-373 591-647 (995)
178 PRK13804 ileS isoleucyl-tRNA s 23.1 57 0.0012 38.1 2.5 44 76-119 56-105 (961)
179 PRK13477 bifunctional pantoate 22.0 4.3E+02 0.0092 28.8 8.7 27 212-238 140-166 (512)
180 COG4575 ElaB Uncharacterized c 21.6 2.3E+02 0.0049 24.3 5.2 22 391-412 37-58 (104)
181 KOG0859 Synaptobrevin/VAMP-lik 21.6 4.6E+02 0.01 25.1 7.7 67 341-409 80-150 (217)
182 cd00560 PanC Pantoate-beta-ala 21.3 1.1E+02 0.0023 30.6 3.7 69 212-310 140-208 (277)
183 PF15605 Toxin_52: Putative to 20.6 1.2E+02 0.0027 25.7 3.4 32 379-411 70-101 (103)
184 PF03310 Cauli_DNA-bind: Cauli 20.5 3.6E+02 0.0077 23.7 6.3 20 393-412 36-55 (121)
185 COG4320 Uncharacterized protei 20.4 1.1E+02 0.0023 31.5 3.5 27 85-117 62-88 (410)
186 PTZ00427 isoleucine-tRNA ligas 20.2 70 0.0015 38.3 2.5 44 76-119 104-153 (1205)
187 PLN02882 aminoacyl-tRNA ligase 20.1 69 0.0015 38.2 2.5 44 76-119 40-89 (1159)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-102 Score=788.88 Aligned_cols=341 Identities=83% Similarity=1.280 Sum_probs=324.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+++|||||||||.+|||||+|++++|++||+.++++|+||||||+|.+++++++++++++++++|+||||||+|++||+|
T Consensus 46 ~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP~ks~if~Q 125 (389)
T PLN02886 46 KKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDPSKASVFVQ 125 (389)
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCccceEEEEe
Confidence 46899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
|++++|.||+|+|+|.+++++|+||+|||++.+..+.+++++|+|+||+|||||||+|++|+||||+||+||+|||||||
T Consensus 126 S~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~a~~VPVG~DQ~qH~eLtRdiA 205 (389)
T PLN02886 126 SHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQADLVPVGEDQKQHLELTRDIA 205 (389)
T ss_pred CCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcCCCeEEEccchHHHHHHHHHHH
Confidence 99999999999999999999999999999998766546789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~ 314 (416)
+|||+.||....+++|.+...+|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 206 ~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~~a~TD~~~ 285 (389)
T PLN02886 206 ERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFP 285 (389)
T ss_pred HHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHhcCCCCCCC
Confidence 99999998655555565556789999999987668999999888899999998789999999999999999999999999
Q ss_pred CcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014899 315 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAA 394 (416)
Q Consensus 315 ~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~ 394 (416)
++++++|++|+++|++.+|..+++.+++|++++|+++++++||+.|+++|+++|+|||+||+++++|++||++||++|++
T Consensus 286 ~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~~iL~~Ga~ 365 (389)
T PLN02886 286 GLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLDSVLKEGAD 365 (389)
T ss_pred CccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 014899 395 KAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 395 kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
|||++|++||++||++|||.+
T Consensus 366 kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 366 AAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999954
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-100 Score=724.70 Aligned_cols=331 Identities=54% Similarity=0.850 Sum_probs=320.8
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCc----EEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE----TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 150 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~----~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~ 150 (416)
+.+|||||||||.+|||||+|++++|++||+.++ |+|+|+|+||+|.|.++.++|+++.+++|.++|||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 6799999999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred EEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHH
Q 014899 151 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 230 (416)
Q Consensus 151 if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLa 230 (416)
+|+||++|+|.|+.|+|+|.++++||+||+|||+|++..+.+.+++|+|+||+|||||||+|++|+||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999876655789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccc
Q 014899 231 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 310 (416)
Q Consensus 231 RdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~T 310 (416)
|++|++||..||+ ++|++|+.++...+.+|++|+||.+|||||+|++.++|+|+|+|+.|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~-----------~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGT-----------EIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccC-----------eeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 9999999999996 56999999998756899999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHH
Q 014899 311 DSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 390 (416)
Q Consensus 311 d~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~ 390 (416)
|....++||+.+||+++|+++||+.+++.+++|+.+++.+++++++|..|||+|+++|+|||++|+++.++++|+++||.
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~ 321 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLE 321 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Q 014899 391 DGAAKAADIADATLNNVYQAMGFLRR 416 (416)
Q Consensus 391 ~Ga~kAr~iA~~tl~~Vr~~~Gl~~~ 416 (416)
+|++|||++|.+||.+|++.|||..+
T Consensus 322 ~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 322 EGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999764
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.9e-95 Score=739.19 Aligned_cols=321 Identities=36% Similarity=0.603 Sum_probs=300.0
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhh--cCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEE
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 152 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~--~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if 152 (416)
..+|||||||||.+|||||+|++++|+++|+ .++|+||||||||+|++.+++++++++++++++|+||||||+|++||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 3589999999999999999999999999976 58999999999999988899999999999999999999999999999
Q ss_pred EcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhh---C---CCCccchhhhhhHHHHHhhhhcccceeecccchHHH
Q 014899 153 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 226 (416)
Q Consensus 153 ~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~---~---~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 226 (416)
+||++++|.||+|+|+|++++++|+||+|||++.... + .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875332 1 145899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014899 227 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306 (416)
Q Consensus 227 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 306 (416)
+|||||||+|||+.||. ++|++|++++...+++|||| +| +|||||+ +|+|+|+|+|++|++|||
T Consensus 162 lELaRdIA~rFN~~yg~-----------~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGG-----------EFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCC-----------cccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 99999999999999974 46999999997767899999 56 5999998 489999999999999999
Q ss_pred hcccCCCCCcccCCCCCCccchHHHHHHhhcC-CCHHHHHHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHH
Q 014899 307 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 384 (416)
Q Consensus 307 kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~-~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 384 (416)
+|+||+.. .+++++|++||+|+||++|++ +++++++++|. +++|++||+.|+++|+++|+|||+||+++++|++|
T Consensus 226 ~A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~ 302 (431)
T PRK12284 226 SIVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPAD 302 (431)
T ss_pred cCCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999865 346789999999999999975 67999999997 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014899 385 LDKVLADGAAKAADIADATLNNVYQAMGFL 414 (416)
Q Consensus 385 l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~ 414 (416)
|++||++|++|||++|++||++||++|||.
T Consensus 303 l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 303 IEDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999999999985
No 4
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.9e-94 Score=718.50 Aligned_cols=327 Identities=57% Similarity=0.939 Sum_probs=310.8
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcC
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 155 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS 155 (416)
+++||||+|||.+|||||+|++++|++||++++|+|+||||||+|++.+++++++++++++++|+||||||+|+.||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 68999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHHH
Q 014899 156 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 235 (416)
Q Consensus 156 ~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA~ 235 (416)
+|++|.+++|+++|.+++++|+|+++||++.... .+++++|+|+||+|||||||++++|+||||.||+||+|||||||+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQ-KENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhcc-CCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999886443 368899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC-
Q 014899 236 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA- 314 (416)
Q Consensus 236 r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~- 314 (416)
+||++|| .+|++|+++++..+++||||+++++|||||+|++.|+|+|+|+|++|++|||+|+||+..
T Consensus 161 ~~n~~~~------------~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~~ 228 (333)
T PRK00927 161 RFNNLYG------------EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERL 228 (333)
T ss_pred Hhhhhcc------------ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCcc
Confidence 9999998 569999999977668999997666799999987679999999999999999999999976
Q ss_pred -CcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHH
Q 014899 315 -GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 391 (416)
Q Consensus 315 -~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~ 391 (416)
.+.++++++|++||+++||++|++++++|++++|. +++|++||+.|++.|+++|+|+|+||+++++|+++|++||++
T Consensus 229 ~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~~ 308 (333)
T PRK00927 229 REIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILAE 308 (333)
T ss_pred cccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 45578899999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Q 014899 392 GAAKAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 392 Ga~kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
|++|||++|++||++||++|||.+
T Consensus 309 G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 309 GAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999964
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-93 Score=715.50 Aligned_cols=320 Identities=37% Similarity=0.615 Sum_probs=298.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCc--EEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEE
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 152 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~--~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if 152 (416)
+.+|||||||||.+|||||+|++++|+++|+.++ ++|+||||||+|.+++++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 3699999999999999999999999999998765 99999999999877899999999999999999999999999999
Q ss_pred EcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC------CCCccchhhhhhHHHHHhhhhcccceeecccchHHH
Q 014899 153 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 226 (416)
Q Consensus 153 ~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~------~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 226 (416)
+||++++|++|+|+++|.+++|||+||+|||++..... ++++++|+++||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865321 236799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014899 227 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306 (416)
Q Consensus 227 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 306 (416)
+|||||||+|||++|| .+|++|++++++.++++||| +| +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg------------~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFG------------DTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhcc------------ccCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 9999999999999998 56999999986655799999 66 59999984 78999999999999999
Q ss_pred hcccCCCCCcccCCCCCCccchHHHHHHhhcC-CCHHHHHHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHH
Q 014899 307 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 384 (416)
Q Consensus 307 kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~-~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 384 (416)
+|+||+.+ .+.+++|++||+++||++|++ +++++++++|. +++|++||++|++.|+++|+|+|+||+++++|+++
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~ 302 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSL 302 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999865 245789999999999999975 57999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014899 385 LDKVLADGAAKAADIADATLNNVYQAMGFL 414 (416)
Q Consensus 385 l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~ 414 (416)
|++||++|++|||++|++||++||++|||.
T Consensus 303 ~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 303 LDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999983
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-92 Score=714.46 Aligned_cols=333 Identities=36% Similarity=0.627 Sum_probs=304.5
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
.+|||||||||.+|||||+|++++|+++|+.++++|+||||||+|++. +++.+++++++++++|+||||||+|+.||+|
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q 82 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ 82 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 589999999999999999999999999999999999999999999854 9999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdi 233 (416)
|++++|++|+|+|+|.+++++|+||+|||++..... .++.++|+++||+|||||||+|++|+||||+||+||+||||||
T Consensus 83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI 162 (398)
T PRK12283 83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI 162 (398)
T ss_pred CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence 999999999999999999999999999999876421 3578999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCcccc---------c-------------------------------------------------cCCCCCc
Q 014899 234 AERVNYLYGGRKWK---------K-------------------------------------------------LGGRGGA 255 (416)
Q Consensus 234 A~r~n~~yg~~~~~---------~-------------------------------------------------~g~~~~~ 255 (416)
|+|||+.||...+. + ..+.++.
T Consensus 163 A~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
T PRK12283 163 ARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242 (398)
T ss_pred HHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCc
Confidence 99999999852111 0 0123445
Q ss_pred cccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHh
Q 014899 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL 335 (416)
Q Consensus 256 ~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~ 335 (416)
+|+.|+++++. +++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+.+...+++ ++|++||+++||++
T Consensus 243 ~~~~P~~~~~~-~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~~-g~Pe~~nl~~i~~~ 315 (398)
T PRK12283 243 ILPEPQALLTE-ASKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTDP-GDPEKCPVWQLHQV 315 (398)
T ss_pred ccCCCcccccC-CCcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCCC-CCCCcCHHHHHHHH
Confidence 79999998855 4899999 77 7999996 48999999999999999999999987555554 99999999999999
Q ss_pred hcCC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014899 336 ISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 412 (416)
Q Consensus 336 ~s~~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~~~G 412 (416)
+++. ++++++++|+ +++|++||+.|+++|+++|+|+||||.++++|+++|++||++|++|||++|++||++||++||
T Consensus 316 ~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~~~g 395 (398)
T PRK12283 316 YSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMG 395 (398)
T ss_pred hCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9877 5899999997 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 014899 413 FLR 415 (416)
Q Consensus 413 l~~ 415 (416)
|.+
T Consensus 396 ~~~ 398 (398)
T PRK12283 396 LSY 398 (398)
T ss_pred CCC
Confidence 963
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-91 Score=686.17 Aligned_cols=305 Identities=51% Similarity=0.810 Sum_probs=290.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCH--HHHHHHHHHHHHHHHHcCccCCCeE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 150 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~--~~i~~~~~~~~a~~lA~GlDp~k~~ 150 (416)
.+++|+||+||||.+|||||+|++++|+.+|+. ++|+|+|||+||+|.+.++ +.+++++++++++|+||||||+|++
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 478999999999999999999999999999999 5999999999999998765 9999999999999999999999999
Q ss_pred EEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHH
Q 014899 151 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 230 (416)
Q Consensus 151 if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLa 230 (416)
||+||++++|.||+|+|+|.+++|+|+||+|||++..+.+ +++++|+|+||+|||||||+|++++||||.||+||+|||
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999987664 689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccc
Q 014899 231 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 310 (416)
Q Consensus 231 RdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~T 310 (416)
||||+|||+.|| .+|++|+++++.. +++|||+|+ +|||||+|+ |+|+|+|+|++|++||++|+|
T Consensus 163 RDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhcc
Confidence 999999999998 6799999999887 899999776 899999985 899999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhhc-CCCHHHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHH
Q 014899 311 DSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 387 (416)
Q Consensus 311 d~~~~~~~~~~~rp~v~~ll~i~~~~s-~~~~eel~~~y~~--l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~ 387 (416)
|+...++++++++||+||+|+||.+|+ +++.++++++|++ ++|++||+.|++.|+++|+|||+||+++.++++++++
T Consensus 227 d~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~ 306 (314)
T COG0180 227 DGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDD 306 (314)
T ss_pred CCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 996567777789999999999999999 9999999999985 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 014899 388 VLADGAAK 395 (416)
Q Consensus 388 iL~~Ga~k 395 (416)
+|.+|++|
T Consensus 307 il~~g~~k 314 (314)
T COG0180 307 ILRKGAEK 314 (314)
T ss_pred HHhccCCC
Confidence 99999874
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=4.3e-90 Score=691.26 Aligned_cols=324 Identities=34% Similarity=0.524 Sum_probs=304.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccCCCeEEEE
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 153 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 153 (416)
+.+||||++|||.+|||||+|++++|++||++++++|+||||||+|+ +.+++++++++++++++|+||||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999999999999999999997 67999999999999999999999999999999
Q ss_pred cCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHH
Q 014899 154 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 232 (416)
Q Consensus 154 QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRd 232 (416)
||+|++|.++.|+++|.++++|++|+++||++....+ .+++++|+++||+||||||++|++|+||||+||+||+||||+
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCC
Q 014899 233 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 312 (416)
Q Consensus 233 iA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~ 312 (416)
||+|||++||+ ++|..|++++.. +++|||| +|.+|||||++ |+|+|+|+|++|++||++|+||+
T Consensus 162 iA~~~n~~~~~-----------~~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGT-----------DVLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCC-----------ccccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 99999999985 468899988865 4899999 66689999984 79999999999999999999998
Q ss_pred CCCcccCCCCCCccchHHHHHHhh--cCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHH
Q 014899 313 SAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 388 (416)
Q Consensus 313 ~~~~~~~~~~rp~v~~ll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~i 388 (416)
.. +.++++++|++||+++|+++| +++++++++++|+ +++|+|||++|+++|+++|+|+|+||+++++|+++|++|
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~v 304 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEI 304 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 54 778899999999999999999 5789999999997 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014899 389 LADGAAKAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 389 L~~Ga~kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
|..|++|||++|++||++||++|||.+
T Consensus 305 l~~G~~ka~~~A~~~~~~v~~~~g~~~ 331 (333)
T PRK12282 305 LKAGSEKAREVAAQTLSEVKDAMGLNY 331 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999953
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=7.4e-88 Score=674.37 Aligned_cols=319 Identities=47% Similarity=0.678 Sum_probs=298.1
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCC--CHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
+++++||||+|||.+|||||+|+++.|..+|..++++|+||||||+|++. +++.++.++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36899999999999999999999999998888899999999999999866 8899999999999999999999999999
Q ss_pred EEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHH
Q 014899 152 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 231 (416)
Q Consensus 152 f~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaR 231 (416)
|+||++++|+++.|+|+|.+|+++|+|+++||++.. .+++++|+|+||+|||||||+|++|+||||.||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 25789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccC
Q 014899 232 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311 (416)
Q Consensus 232 diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td 311 (416)
|||+|||++|| .+|++|++++++..++|||| +| +|||||+|+ |+|+|+|+|++|++||++|+||
T Consensus 158 dia~r~n~~~~------------~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFK------------NFFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcC------------cccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHHHHHhcCCC
Confidence 99999999998 46999999998766889999 45 799999974 8999999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhhc-----CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHH
Q 014899 312 SSAGLEFDNLERPECNNLLSIYQLIS-----GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 384 (416)
Q Consensus 312 ~~~~~~~~~~~rp~v~~ll~i~~~~s-----~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 384 (416)
+.+.+.++++++|++++++.+|++++ ++++++++++|. +++|++||+.|+++|+++|+|+|+||+++++| +
T Consensus 222 ~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~--~ 299 (328)
T TIGR00233 222 GGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE--I 299 (328)
T ss_pred CCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 98888889889999888888888764 345899999996 58999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014899 385 LDKVLADGAAKAADIADATLNNVYQAMGF 413 (416)
Q Consensus 385 l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl 413 (416)
|+++|..|+++||++|++||++||++|||
T Consensus 300 ~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 300 LDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.6e-74 Score=567.11 Aligned_cols=274 Identities=46% Similarity=0.754 Sum_probs=257.8
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 77 ~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
++||||+|||.+|||||+|++++|++||++ ++++|+||||||+|++. +++++++++++++++|+|+||||+|+.||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 589999999999999999999999999994 89999999999999977 9999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
|++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||+||+|||||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998653 36889999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~ 314 (416)
+|||++|| ++|++|+++++. +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+.+
T Consensus 159 ~r~n~~~~------------~~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYG------------EIFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhccccc------------cccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 99999998 579999999985 4799999877789999996 59999999999999999999999988
Q ss_pred CcccCCCCCCccchHHHHHHhhcCCCHHHHH--HHHh--cCChhhHHHHHHHHHHHh
Q 014899 315 GLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQ--NMNWGTFKPLLTDALIEH 367 (416)
Q Consensus 315 ~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~--~~y~--~l~~~dlK~~Lae~I~~~ 367 (416)
.+.++.+++|+++|+++||+++++.+.++++ ++|+ ++++++||+.|++.|+++
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999999988888888 7775 799999999999999864
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.3e-74 Score=579.62 Aligned_cols=286 Identities=28% Similarity=0.357 Sum_probs=263.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
+++++|||++|||.+|||||++ +.+|++||+. ++++|+||||||+++ ..+++++++++++++++|+||||||+|+.|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4789999999999999999986 7799999996 799999999999998 569999999999999999999999999999
Q ss_pred EEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhh------cccceeecccchHH
Q 014899 152 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 225 (416)
Q Consensus 152 f~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~------~~adivpvG~DQ~~ 225 (416)
|+||++++|.+++|.++|.+++++++|+.+|+ +++++|+++||+|||||||+ |++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999998886 46799999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHh
Q 014899 226 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 305 (416)
Q Consensus 226 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI 305 (416)
|+|||||||+|||++|| |++|.+++++ ++|||+ | +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~---~lpgL~-G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYHK---FMPGLT-G-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhhh---cccCCC-C-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999998 8999999875 999994 5 69999997 59999999999999999
Q ss_pred hhcccCCCCCcccCC--CCCCccchHHHHHHhhc---CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014899 306 KRCKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEI 378 (416)
Q Consensus 306 ~kA~Td~~~~~~~~~--~~rp~v~~ll~i~~~~s---~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~ 378 (416)
|+|+||+..++++++ +++|++|++++|+.++. +++++|++++|+ +++|++||+.|+++|+++|+|+|+||+++
T Consensus 275 ~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~ 354 (368)
T PRK12285 275 MKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEA 354 (368)
T ss_pred HhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998776543 58999999999999875 578999999997 48999999999999999999999999988
Q ss_pred hcCHHHHHHHHHHH
Q 014899 379 MSDSAYLDKVLADG 392 (416)
Q Consensus 379 ~~d~~~l~~iL~~G 392 (416)
.. .|++.+..+
T Consensus 355 ~~---~~~~~~~~~ 365 (368)
T PRK12285 355 RE---ILEKYLYDG 365 (368)
T ss_pred HH---HHHHhhccc
Confidence 63 666665543
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-69 Score=543.68 Aligned_cols=268 Identities=25% Similarity=0.367 Sum_probs=241.0
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhh-cCcEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~-~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
+++++||||+|||.+||||++ ++++|++||+ .++++|+||||||++++ .+++.+++++++++++|+|+|+||+|+.|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 478999999999999999986 5789999999 58999999999999985 69999999999999999999999999999
Q ss_pred EEcCCchhhhh---HHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHH
Q 014899 152 FVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 228 (416)
Q Consensus 152 f~QS~v~e~~e---l~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hle 228 (416)
|+||+|++|.+ +.|.++|.++++++.|+.+++.+ .. ++.++|+|+||+||||||++|++|+||||.||+||++
T Consensus 108 ~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~~--~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~ 183 (329)
T PRK08560 108 VLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--RM--EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM 183 (329)
T ss_pred EecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--cC--CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHH
Confidence 99999998865 44449999999999999888753 11 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhc
Q 014899 229 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308 (416)
Q Consensus 229 LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA 308 (416)
||||+|++|| +.+|.++.. ++||||+++++|||||+| +|+|+|+|+|++|++|||+|
T Consensus 184 l~Rdia~~~n------------------~~~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~kA 240 (329)
T PRK08560 184 LAREVLPKLG------------------YKKPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKKA 240 (329)
T ss_pred HHHHhhHhcC------------------CCCceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHhc
Confidence 9999999998 357877775 499999766679999997 59999999999999999999
Q ss_pred ccCCCCCcccCCCCCCccchHHHHHHhhcC--------------------CCHHHHHHHHh--cCChhhHHHHHHHHHHH
Q 014899 309 KTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFKPLLTDALIE 366 (416)
Q Consensus 309 ~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~--------------------~~~eel~~~y~--~l~~~dlK~~Lae~I~~ 366 (416)
+||+ +.|+.||+++|++++.. ++++|++++|. +++|+|||++|+++|++
T Consensus 241 ~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~ 311 (329)
T PRK08560 241 YCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIE 311 (329)
T ss_pred cCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9975 56888999999998752 57899999997 48999999999999999
Q ss_pred hhhHHHHHHHHH
Q 014899 367 HLHPIQVRYEEI 378 (416)
Q Consensus 367 ~L~pirer~~~~ 378 (416)
+|+|||++|++.
T Consensus 312 ~l~pir~~~~~~ 323 (329)
T PRK08560 312 ILEPVREYLEEG 323 (329)
T ss_pred HHHHHHHHHhCC
Confidence 999999999854
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-68 Score=542.92 Aligned_cols=269 Identities=24% Similarity=0.365 Sum_probs=238.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHH--HHHHHhhc-CcEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCccCC
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~--~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~ 147 (416)
++++||+||+|||++|||| |+++ +|++||++ ++|+|+||||||++++ .+++++++++++++++|+|+|+||+
T Consensus 65 ~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~ 142 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQ--GILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMD 142 (383)
T ss_pred CCCEEEEEECCCCcccccc--hHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 5689999999999999999 4444 89999996 8999999999999984 5999999999999999999999999
Q ss_pred CeEEEEcCC-chhhhhHHHHHhhc----ccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccc
Q 014899 148 KASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 222 (416)
Q Consensus 148 k~~if~QS~-v~e~~el~w~L~~~----~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~D 222 (416)
|+.||+||+ +++|.+++|++.+. ++++++.|+.+++++.. .++.++|+|+||+||||||++|++|+||||.|
T Consensus 143 k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~D 219 (383)
T PTZ00126 143 NVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMD 219 (383)
T ss_pred ceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCcc
Confidence 999999998 68999999998775 59999999999986432 25679999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHH
Q 014899 223 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 302 (416)
Q Consensus 223 Q~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~ 302 (416)
|+||++||||+|++||+. ++|..+.. ++||||+||++|||||+| +++|+|+|+|++|+
T Consensus 220 Q~~~~~LaRdia~~~~~~-----------------~~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~ 277 (383)
T PTZ00126 220 QRKVNMLAREYCDKKKIK-----------------KKPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVN 277 (383)
T ss_pred HHHHHHHHHHHHHHhCCC-----------------CCceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHH
Confidence 999999999999999852 34554433 699999888899999997 48999999999999
Q ss_pred HHhhhcccCCCCCcccCCCCCCccchHHHHHHhhc--------------------CCCHHHHHHHHh--cCChhhHHHHH
Q 014899 303 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQ--NMNWGTFKPLL 360 (416)
Q Consensus 303 kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s--------------------~~~~eel~~~y~--~l~~~dlK~~L 360 (416)
+|||+|+||+ +.++.||+++|++++. +.++++++++|. .++|++||++|
T Consensus 278 kKI~kA~t~p---------~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~l 348 (383)
T PTZ00126 278 RKIKKAYCPP---------GVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPAL 348 (383)
T ss_pred HHHHhCcCCC---------CCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999964 4567789999998742 258999999997 58999999999
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 014899 361 TDALIEHLHPIQVRYEEI 378 (416)
Q Consensus 361 ae~I~~~L~pirer~~~~ 378 (416)
|++|+++|+|||++|++.
T Consensus 349 ae~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 349 AKYLNLMLQPVRDHFQNN 366 (383)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999999743
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-65 Score=549.36 Aligned_cols=281 Identities=22% Similarity=0.343 Sum_probs=246.5
Q ss_pred CCceEEEecCCCCcchhhh-HHHHHHHHHHHhhcCcEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGn-ylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
.++++||||+|||++|||| ++++++.|..+|++++++||||||||+|++ .++++++.++++++++|+|+|+||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 3579999999999999999 567777787778889999999999999974 388999999999999999999999999
Q ss_pred EEEEcCC-chhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC--CCCccchhhhhhHHHHHhhhhcccceeecccchHHH
Q 014899 150 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 226 (416)
Q Consensus 150 ~if~QS~-v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~--~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 226 (416)
+||+||+ +++|++++|++ .++++++.++.++|++.+..+ .+++++|+++||+|||||||+|++|+||||.||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999998 88999999999 588999999999998644222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014899 227 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306 (416)
Q Consensus 227 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 306 (416)
+||||++|++||+. ++|..+.. ++||||+||++|||||+| +|+|+|+|+|++|++|||
T Consensus 189 ~eLaRdia~~~g~~-----------------~kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRK-----------------LKPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCC-----------------CCceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 99999999998742 23443333 699999877789999997 499999999999999999
Q ss_pred hcccCCCC--CcccCCCCCC----ccchHHHHHHhhcC--------------CCHHHHHHHHh--cCChhhHHHHHHHHH
Q 014899 307 RCKTDSSA--GLEFDNLERP----ECNNLLSIYQLISG--------------KTKGEVAEECQ--NMNWGTFKPLLTDAL 364 (416)
Q Consensus 307 kA~Td~~~--~~~~~~~~rp----~v~~ll~i~~~~s~--------------~~~eel~~~y~--~l~~~dlK~~Lae~I 364 (416)
+|+||+.+ .++..++++| +.||+++|++++.. +++++++++|. +++|+|||++|+++|
T Consensus 247 kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l 326 (682)
T PTZ00348 247 QAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEV 326 (682)
T ss_pred hCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999863 4566777888 88999999998732 67899999996 589999999999999
Q ss_pred HHhhhHHHHHHHHH
Q 014899 365 IEHLHPIQVRYEEI 378 (416)
Q Consensus 365 ~~~L~pirer~~~~ 378 (416)
+++|+|||++|++.
T Consensus 327 ~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 327 NALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999855
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.2e-60 Score=483.01 Aligned_cols=275 Identities=19% Similarity=0.248 Sum_probs=237.7
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc--CcEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~--~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
+++++|+|++|||. +||||+++++ ....||++ +.++|+|||+|+++.+ .+++++++++++++++|+|+||||+|+
T Consensus 72 ~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt 150 (383)
T PLN02486 72 EKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERT 150 (383)
T ss_pred CCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 46899999999995 9999999977 23349987 5789999999999984 599999999999999999999999999
Q ss_pred EEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhh------hccc-----cee
Q 014899 150 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DFV 217 (416)
Q Consensus 150 ~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl------~~~a-----div 217 (416)
.||.|+++ +.+++|.... ++.|+.+++++.+.+| .++.++|+++||+||||||| +++. |+|
T Consensus 151 ~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lV 223 (383)
T PLN02486 151 FIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLI 223 (383)
T ss_pred EEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCccee
Confidence 99966655 4455554332 5788889998877766 45779999999999999998 4554 899
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCC
Q 014899 218 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 297 (416)
Q Consensus 218 pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~ 297 (416)
|||.||+||++||||+|+||| +.+|..+++ +++|+|+++.+|||||+| +|+|+|+|+
T Consensus 224 PvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D~ 280 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLG------------------YYKPALIES---RFFPALQGESGKMSASDP--NSAIYVTDT 280 (383)
T ss_pred ecccchHHHHHHHHHHHHHhC------------------CCCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccCC
Confidence 999999999999999999998 347876654 499999877789999997 489999999
Q ss_pred HHHHHHHhhh-cccCCCCCcccC--CCCCCccchHHHHHHhhc--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhH
Q 014899 298 KDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 370 (416)
Q Consensus 298 ~e~I~kKI~k-A~Td~~~~~~~~--~~~rp~v~~ll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~p 370 (416)
|++|++||++ |+||+..+++.. .+++|+++++++|+.+|. +++++|++++|+ +++|++||+.|++.|+++|+|
T Consensus 281 p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~ 360 (383)
T PLN02486 281 PKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVER 360 (383)
T ss_pred HHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999998876553 368999999999999996 367999999996 589999999999999999999
Q ss_pred HHHHHHHHh
Q 014899 371 IQVRYEEIM 379 (416)
Q Consensus 371 irer~~~~~ 379 (416)
+|+|++++.
T Consensus 361 ~qerr~~~~ 369 (383)
T PLN02486 361 HQRARAAVT 369 (383)
T ss_pred HHHHHHHHH
Confidence 999999885
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=1.4e-60 Score=470.47 Aligned_cols=275 Identities=35% Similarity=0.531 Sum_probs=243.6
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC---CHHHHHHHHHHHHHH--HHHcCccCC
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~a~--~lA~GlDp~ 147 (416)
+++++|+||+|||.+||||+ +.+.+|++||+. ++++|+||||||++++. +++.++.++.+++++ |+|+|+||+
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l-~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~ 82 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHL-VPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPE 82 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHH-HHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTT
T ss_pred CCcEEEEeECCCCcccchHH-HHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 57899999999999999965 557899999976 89999999999999854 599999999999999 999999999
Q ss_pred CeEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhhcccceeecccchHHH
Q 014899 148 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 226 (416)
Q Consensus 148 k~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~h 226 (416)
++.||+||+|+++.++.|.+.+.++.++++|+.++++...+.+ ++++++|+|+||+||||||+++++|+||||.||++|
T Consensus 83 k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~ 162 (292)
T PF00579_consen 83 KTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRGH 162 (292)
T ss_dssp TEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHH
T ss_pred ceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHHH
Confidence 9999999999999999999999999999999999998655544 358899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014899 227 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306 (416)
Q Consensus 227 leLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 306 (416)
++++|++|+|+|.+. .|++|..++++ ++|+| +|.+|||||+++ ++|+|+|++++|++||+
T Consensus 163 ~~l~rd~a~k~~~~~--------------~~~~p~~l~~~---~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki~ 222 (292)
T PF00579_consen 163 IELARDLARKFNYKE--------------IFPKPAGLTSP---LLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKIK 222 (292)
T ss_dssp HHHHHHHHHHHTHHS--------------TSSS-EEEEET---CBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhhcccc--------------cccCchheeec---ccccc-CCccccCccCCc--cEEEEeccchhHHHHHH
Confidence 999999999999752 37899999986 99999 676799999974 79999999999999999
Q ss_pred hcccCCCCCcccCCCCCCccch-HHHHHHhhcC----CCHHHHHHHHh--cCChhhHHHHHHHHHHHhhh
Q 014899 307 RCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 369 (416)
Q Consensus 307 kA~Td~~~~~~~~~~~rp~v~~-ll~i~~~~s~----~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~ 369 (416)
+|+|++...+......+|.+++ +++++..+.+ .+++++.++|. .+|++|+|++++++++++|+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 223 KAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9999998755555557788888 8888887753 35799999997 47999999999999999885
No 17
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.2e-58 Score=453.34 Aligned_cols=248 Identities=26% Similarity=0.401 Sum_probs=221.8
Q ss_pred eEEEecCCCC-cchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC----------CHHHHHHHHHHHHHHHHHcCc
Q 014899 77 RIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 144 (416)
Q Consensus 77 ~i~sGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~----------~~~~i~~~~~~~~a~~lA~Gl 144 (416)
.+|+||+||| .+|||||+| +.+|++||+. ++++++|||+||+++.. +++++++++.+++++|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 8899999995 89999999999999843 799999999999999999999
Q ss_pred c--CCCeEEEEcCCch---hhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhccc----c
Q 014899 145 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 215 (416)
Q Consensus 145 D--p~k~~if~QS~v~---e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~a----d 215 (416)
| |+|+.||.||+|+ +|.++.|.+++.+++++|.|+.+||++.. +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~----~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE----EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc----CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999999 89999999999999999999999998652 56899999999999999999988 9
Q ss_pred eeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014899 216 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 295 (416)
Q Consensus 216 ivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 295 (416)
+||||.||+||++++||+|+|||. |+.|..++.+ +|||| +| .|||||+++.-..|++.
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p---~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIP---LVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeec---cccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 6788888874 99999 56 39999986321224479
Q ss_pred CCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHH----HHhcCChhhHHHHHHHHHHHh
Q 014899 296 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDALIEH 367 (416)
Q Consensus 296 D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~----~y~~l~~~dlK~~Lae~I~~~ 367 (416)
|+|++|++||++|+ .++++.|+++|++.+.+|+++ .|++.+++++|+.||+.|+++
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999998 268899999999888888777 555678899999999999864
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4.3e-59 Score=455.62 Aligned_cols=249 Identities=23% Similarity=0.268 Sum_probs=221.1
Q ss_pred ceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 014899 76 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 143 (416)
Q Consensus 76 ~~i~sGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA~G 143 (416)
.++|+||+||| .+|||||+++ .+|++||++ ++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999 7999999985 589999995 799999999999997 5 589999999999999999999
Q ss_pred cc--CCCeEEEEcCCchhhhhHHHH----HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhccccee
Q 014899 144 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 217 (416)
Q Consensus 144 lD--p~k~~if~QS~v~e~~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adiv 217 (416)
+| |+|+.||+||+|++| ++|+ +++.++++++.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 999999999999988 7787 9999999999999999987532 267899999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc-eecCC
Q 014899 218 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 296 (416)
Q Consensus 218 pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~-I~L~D 296 (416)
|||.||++|++++||+|+|||+ ..|..+.. ++||++ +| .|||||.++ +. |++.|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 9999999999999999999972 34555544 599999 56 499999874 44 79999
Q ss_pred CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHHHHHHHh
Q 014899 297 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 367 (416)
Q Consensus 297 ~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~~ 367 (416)
+|++|++||++|+|| ++.+++.++.++++++++|++++|+ +-.++++|+.||++|+++
T Consensus 211 sp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 211 SPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred CHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 999999999999986 4578888888888889999999998 323999999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=6e-51 Score=418.71 Aligned_cols=257 Identities=20% Similarity=0.238 Sum_probs=219.9
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 141 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 141 (416)
+++++|+||+|||. +|||||++ +.+|++||+. ++++++||||||+++ |. +.+.+++|+.++. ..+|
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~-~ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIK-EQLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHH-HHHH
Confidence 46899999999995 99999996 7799999997 799999999999996 42 5678888887664 4559
Q ss_pred cCccCCC--eEEEEcCCchhhhhHHHHHh---hcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc----
Q 014899 142 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 212 (416)
Q Consensus 142 ~GlDp~k--~~if~QS~v~e~~el~w~L~---~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 212 (416)
+|+||++ +.||+||+|+++.++.|+|. +.++++++.+..+||++... ++++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999877 88888888888888865422 2578999999999999999999
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
++|+||||.||++|++++||+|+|||. ..+..+.. |+|+++ +| +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~------------------~~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGG------------------KPQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCC------------------CCeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 999999999999999999999999883 12223332 589998 67 7999997 6899
Q ss_pred ecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHHHHHHHhh
Q 014899 293 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 368 (416)
Q Consensus 293 ~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L 368 (416)
+|+| +|+++++||+++ + ++++.+++.++.+++.+++++++++|. +-+++++|+.||+.|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~v~~~l 308 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-S------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVLAEEITALV 308 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-C------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9999 999999999996 2 235677777777777888999999995 5599999999999999999
Q ss_pred hHHHH
Q 014899 369 HPIQV 373 (416)
Q Consensus 369 ~pire 373 (416)
+...+
T Consensus 309 hg~~~ 313 (408)
T PRK05912 309 HGEEA 313 (408)
T ss_pred CCHHH
Confidence 98654
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.5e-48 Score=395.62 Aligned_cols=258 Identities=17% Similarity=0.201 Sum_probs=215.9
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 141 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 141 (416)
+++++|+||+|||. +||||+++ +.+|.+||+. ++++++||||||+++ | .+.+++++|+.++.+.+.+
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~ 110 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK 110 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999995 99999877 6789999998 789999999999986 3 2567899999988888766
Q ss_pred cCccCCCeEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhhc----ccce
Q 014899 142 CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QSDF 216 (416)
Q Consensus 142 ~GlDp~k~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~----~adi 216 (416)
|+||++++||+||+|+++.++.|+|.++.....++||.++++...+.. ++++++|+|+||+|||||++++ ++|+
T Consensus 111 -~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~i 189 (410)
T PRK13354 111 -LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVDL 189 (410)
T ss_pred -hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCCE
Confidence 999999999999999998888888766666666677776666544442 3578999999999999999999 9999
Q ss_pred eecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014899 217 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 296 (416)
Q Consensus 217 vpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 296 (416)
+|||.||++|++++||+|+|+|.. .|..+.. |.|+++ +|+ |||||. +|+|||+|
T Consensus 190 q~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~L~d 243 (410)
T PRK13354 190 QIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIWLDP 243 (410)
T ss_pred EEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCceeccC
Confidence 999999999999999999999842 3434443 589998 775 999997 58999999
Q ss_pred C---HHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhc---CCCHHHHHHHHhc-CChhhHHHHHHHHHHHhhh
Q 014899 297 P---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---GKTKGEVAEECQN-MNWGTFKPLLTDALIEHLH 369 (416)
Q Consensus 297 ~---~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s---~~~~eel~~~y~~-l~~~dlK~~Lae~I~~~L~ 369 (416)
+ |+++++||+++- | +.++.|+++|+ .+++++++++|.. .+++++|+.||+.|+++++
T Consensus 244 ~~tsp~~i~qki~~~~-D---------------~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~~v~~~vh 307 (410)
T PRK13354 244 EKTSPYEFYQFWMNID-D---------------RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLAEEITKFVH 307 (410)
T ss_pred CCCCHHHHHHHHHcCC-h---------------HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHC
Confidence 9 999999999862 1 35577777776 4678889999974 4699999999999999999
Q ss_pred HHHHHH
Q 014899 370 PIQVRY 375 (416)
Q Consensus 370 pirer~ 375 (416)
+.++..
T Consensus 308 g~~~~~ 313 (410)
T PRK13354 308 GEEAAE 313 (410)
T ss_pred CHHHHH
Confidence 977543
No 21
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-48 Score=370.67 Aligned_cols=267 Identities=24% Similarity=0.252 Sum_probs=222.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHH-H---cCccC
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL-A---CGIDN 146 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~l-A---~GlDp 146 (416)
+.+.+|||+.|||+||+|.+++ |.+..+|-++ |+|.|++|||||++++ ..++.+..++.|+-..+. | .+++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vp-m~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVP-MMKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeee-hhHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 5689999999999999999888 5578888887 8999999999999984 466777666665544433 3 35677
Q ss_pred CCeEEEEcCCch---hhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccch
Q 014899 147 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 223 (416)
Q Consensus 147 ~k~~if~QS~v~---e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ 223 (416)
++..|...|++. +++-..++++..++-..+++... . ..++ .++..++.++||.|||+|++++++|++++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga-e-vvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA-E-VVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh-h-HHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 888888888874 56677777777776655554433 2 1222 367899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHH
Q 014899 224 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 303 (416)
Q Consensus 224 ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~k 303 (416)
|..+.+||+++..++ +++|..++++ ++|||.+| +|||||+|+ |.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~------------------ykKrihLmnp---MvPGL~q~-~KMSsSd~~--SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLG------------------YKKRIHLMNP---MVPGLAQG-EKMSSSDPL--SKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhC------------------cccceeecCC---CCcccccc-CccccCCcc--cccccccCHHHHHH
Confidence 999999999999887 4578788774 99999654 799999985 99999999999999
Q ss_pred HhhhcccCCCCCcccCCCCCCccchHHHHHHhh-----------------------cCCCHHHHHHHHh--cCChhhHHH
Q 014899 304 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEECQ--NMNWGTFKP 358 (416)
Q Consensus 304 KI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~-----------------------s~~~~eel~~~y~--~l~~~dlK~ 358 (416)
||++||| +|+..+.|+++++.+++ +++++|+++++|. ++||+|||+
T Consensus 244 KI~kAfC---------ePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~ 314 (360)
T KOG2144|consen 244 KIKKAFC---------EPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKK 314 (360)
T ss_pred HHHHhcC---------CCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHH
Confidence 9999996 56788889999998874 4568999999997 699999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 014899 359 LLTDALIEHLHPIQVRYEEI 378 (416)
Q Consensus 359 ~Lae~I~~~L~pirer~~~~ 378 (416)
.|+.+|+++|+|||+.++..
T Consensus 315 ~l~~alN~lL~~ir~~~~~~ 334 (360)
T KOG2144|consen 315 GLEKALNELLQPIREEFSNW 334 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=9.8e-44 Score=362.02 Aligned_cols=242 Identities=21% Similarity=0.270 Sum_probs=194.5
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 014899 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 142 (416)
Q Consensus 75 ~~~i~sGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA~ 142 (416)
++++|+||+||| .+|||||++ +.+|.+||+. ++++++||||||+++ |. +.+++++|+ ++++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 689999999999 799999998 6789999998 799999999999997 42 345666666 678889999
Q ss_pred CccCCCeEEEEcCCch---hhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeec
Q 014899 143 GIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 219 (416)
Q Consensus 143 GlDp~k~~if~QS~v~---e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpv 219 (416)
|+||+++.|++||+|. ++.++.|.+++.++++++.|..+++.+. . +++++++|+||+|||+|++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~--~--~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL--E--RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH--h--cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 9999999999999985 4678888899999999999999998543 2 4589999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC------CC--CCc
Q 014899 220 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 291 (416)
Q Consensus 220 G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p------~~--~s~ 291 (416)
|.||++|++.+|++|+++|.+.+ |.+|.+++++ + || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~~--------------~~~t~pLl~~-------~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSLG--------------FGLTVPLLTP-------A-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCCc--------------eeeceeeecC-------C-CC-CCccCCCCCcccCCccHhhhh
Confidence 99999999999999999985432 6667666654 3 34 46666642 11 378
Q ss_pred eecCCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhH
Q 014899 292 INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 370 (416)
Q Consensus 292 I~L~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~p 370 (416)
||+.|+|+++.+||++++|+... ++++++.+ ..+-++.+.|+.+|..|.+.++.
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~~------------------------~ei~~l~~-~~~~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLGL------------------------EEIEALVE-LKGPSPREVKENLAKEITKYVHG 294 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCcH------------------------HHHHHHHH-hcccCHHHHHHHHHHHHHHHhcC
Confidence 88888899999999999997421 22333322 23356677777777777776654
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-44 Score=344.28 Aligned_cols=276 Identities=21% Similarity=0.297 Sum_probs=241.5
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhcCc--EEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCC
Q 014899 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ~~~~--~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
+|+.+|||..|| +.|||||.+++| .+| ||+.++ .+|.+.|.+.++... ..++..+.+++++.+++|+|+||.|
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 478999999999 559999999988 889 999976 589999999999854 8899999999999999999999999
Q ss_pred eEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhhc-----------ccce
Q 014899 149 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSDF 216 (416)
Q Consensus 149 ~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~-----------~adi 216 (416)
+.||.+.++..-. ...-++-++.++.+++.....+| +++.++|.+.+|..|||..+.. -+|+
T Consensus 162 TfIFsn~~y~g~~------~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CL 235 (397)
T KOG2145|consen 162 TFIFSNLDYMGGP------AFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCL 235 (397)
T ss_pred eEEEechhhccCc------HHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCcee
Confidence 9999888864210 11223446678888887777777 6788999999999999999874 1689
Q ss_pred eecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014899 217 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 296 (416)
Q Consensus 217 vpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 296 (416)
+|+.+||+|++++|||+|.|++ +++|..+++. ++|.|++.+.|||.|+|+ |+|||+|
T Consensus 236 iPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~st---ffpaLqG~~~KMSASdpn--s~Ifltd 292 (397)
T KOG2145|consen 236 IPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHST---FFPALQGAQTKMSASDPN--SAIFLTD 292 (397)
T ss_pred ceeeccCChHHHhhhhhhhhhC------------------CCCcceeehh---hchhhhCcccccccCCCC--ceEEecC
Confidence 9999999999999999999966 7899888875 999999888999999984 9999999
Q ss_pred CHHHHHHHhhh-cccCCCCCcccCCC--CCCccchHHHHHHhhc--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhh
Q 014899 297 PKDVIANKIKR-CKTDSSAGLEFDNL--ERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 369 (416)
Q Consensus 297 ~~e~I~kKI~k-A~Td~~~~~~~~~~--~rp~v~~ll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~ 369 (416)
++++|++||.+ |+++++.+++.+++ ++|+|+.-++|+++|- +.++|++..+|. ++..||+|+.+.+.|.+++.
T Consensus 293 t~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~ 372 (397)
T KOG2145|consen 293 TAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVS 372 (397)
T ss_pred cHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH
Confidence 99999999986 99999999988775 8999999999999985 447899999996 69999999999999999999
Q ss_pred HHHHHHHHHhc
Q 014899 370 PIQVRYEEIMS 380 (416)
Q Consensus 370 pirer~~~~~~ 380 (416)
.+|+++.++..
T Consensus 373 ~hQa~Rk~Vtd 383 (397)
T KOG2145|consen 373 RHQAARKEVTD 383 (397)
T ss_pred HHHHHHHhccH
Confidence 99999998763
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-40 Score=353.65 Aligned_cols=226 Identities=15% Similarity=0.183 Sum_probs=196.4
Q ss_pred cCcEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCch-hhhhHHHH----HhhcccHHHHh
Q 014899 106 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AHVELMWL----LSSATPIGWLN 177 (416)
Q Consensus 106 ~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~-e~~el~w~----L~~~~~~~~l~ 177 (416)
+++++|++|||||++++ +++++|++.++++.++|.|+|+|++ +.|+|+|+.. .+...||. ++..+++.|+.
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 37999999999999984 6999999999999999999999999 9999999964 33557886 67888999998
Q ss_pred hhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 014899 178 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 257 (416)
Q Consensus 178 R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f 257 (416)
|+.. ++..++|.++||+||++||+++++|++.+|+|||..++||||++++.+
T Consensus 486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~------------------- 537 (682)
T PTZ00348 486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI------------------- 537 (682)
T ss_pred HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-------------------
Confidence 8752 255699999999999999999999999999999999999999988522
Q ss_pred cCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhh-
Q 014899 258 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI- 336 (416)
Q Consensus 258 ~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~- 336 (416)
.|.+++. +++|+|..|..+|++|++ +|+|+|.|++++|++||++|||. ++ .+.||+++|++++
T Consensus 538 -~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cp---------p~-~~~Npvl~~~~y~~ 601 (682)
T PTZ00348 538 -ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSA---------PN-EEANPVISVAQHLL 601 (682)
T ss_pred -cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCC---------CC-CCCCcHHHHHHHHh
Confidence 2333333 589999888889999975 69999999999999999999974 32 3569999999885
Q ss_pred ------------------cCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014899 337 ------------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 376 (416)
Q Consensus 337 ------------------s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~ 376 (416)
++.+++|++++|. .+||.|||.+|+++|+++|+|+|+.++
T Consensus 602 ~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 602 AQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred cCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999997 599999999999999999999999985
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-35 Score=300.60 Aligned_cols=271 Identities=20% Similarity=0.227 Sum_probs=209.0
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-C-CCHHHHHHHHHH----HHHH-HHHcCcc
Q 014899 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P-YDTQQLSKATRE----TAAI-YLACGID 145 (416)
Q Consensus 75 ~~~i~sGi~PTG-~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~-~~~~~i~~~~~~----~~a~-~lA~GlD 145 (416)
+.++|+||+||| .+||||+++ +.+..+||++ ++++++|||+||+++ | +..+..+..+.+ +++. ..++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 699999998 5688899998 799999999999998 5 466777776653 3333 3467877
Q ss_pred CC-CeEEEEcCCchh---hhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeeccc
Q 014899 146 NS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 221 (416)
Q Consensus 146 p~-k~~if~QS~v~e---~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~ 221 (416)
++ ++.|..+|+|.. +.+....++..++++++.+..+++.+ ...+.++++.+|+||+|||+|+++++.|++.+|.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R--~~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKR--LEREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHH--hccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 999999999963 44444457789999999999898843 3323579999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC-------CCCceec
Q 014899 222 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 294 (416)
Q Consensus 222 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~-------~~s~I~L 294 (416)
||+.++.++||+++|++ +++|.++..| .|+++ ||. |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g------------------~~~~~~lt~P---LL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLG------------------QKKVVGLTTP---LLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCeEEEEec---cccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 99999999999999965 3456667664 99999 775 88887642 3457888
Q ss_pred CCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHh---------------------hcCC-----CHHHHHHHH
Q 014899 295 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL---------------------ISGK-----TKGEVAEEC 348 (416)
Q Consensus 295 ~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~---------------------~s~~-----~~eel~~~y 348 (416)
.|.+..|..|++.+||.....+. .+++.+|.++ +.|+ .+++.+..|
T Consensus 246 yq~~~~i~D~~~~~~~~~~t~l~--------~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F 317 (401)
T COG0162 246 YQYWMNIEDADVKRFLKLLTFLS--------LEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLF 317 (401)
T ss_pred hhcHhcCcHHHHHHHHHHhCcCC--------hHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHH
Confidence 88889999999999986543221 1223333221 1222 445566666
Q ss_pred h-----cCChhhHHH-----HHHHHHHHhhhHHHHHHHHHh
Q 014899 349 Q-----NMNWGTFKP-----LLTDALIEHLHPIQVRYEEIM 379 (416)
Q Consensus 349 ~-----~l~~~dlK~-----~Lae~I~~~L~pirer~~~~~ 379 (416)
. ++++.|+|. .++..+...|.|.|...++..
T Consensus 318 ~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i 358 (401)
T COG0162 318 SEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLI 358 (401)
T ss_pred hcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhc
Confidence 4 578999999 888888888999988777653
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=3.1e-17 Score=163.85 Aligned_cols=257 Identities=18% Similarity=0.238 Sum_probs=164.1
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHH---
Q 014899 75 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIY--- 139 (416)
Q Consensus 75 ~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~--- 139 (416)
|.+||.|++||.. +|+||.++ +...+.+|.. ++++-+|++.+|.++ |. +.+.++.|++.+...+
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~-lm~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLA-LMVLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHH-HHHHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5799999999986 99999998 4577789987 789999999999986 31 2234444444332222
Q ss_pred -------HHcCccCCCeEEEEcCCchhhhhH-HHH--HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhh
Q 014899 140 -------LACGIDNSKASVFVQSHVRAHVEL-MWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 209 (416)
Q Consensus 140 -------lA~GlDp~k~~if~QS~v~e~~el-~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADI 209 (416)
.-+|..-.+-+|+.+++|-+-..+ -++ .+.+..+|.|.++-+.+. |.+..+..++.+|+|.+|||+|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~--RLes~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKS--RLESPNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHH--hhcCCCCCcHHHHHHHHHHHHhH
Confidence 234555567789999997432221 111 223444444444444442 33334678999999999999999
Q ss_pred hh----cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014899 210 LL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 210 l~----~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 285 (416)
++ |+++++.+|.||+.|++..-|+.+|+-..-+ .+|-+..++++. - +| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~PLlTs-------s-tG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFPLLTS-------S-TG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeeeeEec-------C-cc-hhhccCC
Confidence 98 4799999999999999999999988653100 223333344443 2 56 6999997
Q ss_pred CCCCCceecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHH
Q 014899 286 PSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLT 361 (416)
Q Consensus 286 p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~La 361 (416)
+|+|||+- +|-++++=.-++. +.+++-++.++.++.-+++++|.++-. +-...-.-+.||
T Consensus 279 ---GnAvWLdp~~tspy~lYQfF~~~p-------------Dd~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r~aQ~~LA 342 (467)
T KOG2623|consen 279 ---GNAVWLDPSKTSPYHLYQFFASLP-------------DDDVEKFLKLFTFLPLEEIKQILEEHRKEPSQRIAQKLLA 342 (467)
T ss_pred ---CceEEecCccCCcHHHHHHHHhCc-------------hhHHHHHHHHHhcCCHHHHHHHHHHHhcChhhhhHHHHHH
Confidence 68999974 4556665444433 112334444444433334444444432 333344566777
Q ss_pred HHHHHhhhHH
Q 014899 362 DALIEHLHPI 371 (416)
Q Consensus 362 e~I~~~L~pi 371 (416)
+.|.++++..
T Consensus 343 ~eVTr~VHG~ 352 (467)
T KOG2623|consen 343 AEVTRMVHGK 352 (467)
T ss_pred HHHHHHHccc
Confidence 7777777653
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.61 E-value=4e-15 Score=143.35 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=119.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcCcEEEE-EeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE-------EEEc
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 154 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~-IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~Q 154 (416)
.|||.+||||+.+++.+|...+...-.+|+ |.| |++. ....+....+.+++..+||++++.. +|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~~--r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQE--RSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCCC--CCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 578999999999999999887776444444 777 4332 3344556677778888999999853 8999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhH---hhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH---KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 231 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~---~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaR 231 (416)
|+-.+ .|++... ..| =|..+|++.++.|....+.++|+.|.|+..+....+
T Consensus 83 S~r~~---------------------~y~~~~~~L~~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~ 136 (239)
T cd00808 83 SERLE---------------------IYRKYAEKLLEKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQI 136 (239)
T ss_pred eCCHH---------------------HHHHHHHHHHHcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHH
Confidence 97322 1111111 111 278899999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC----CCHHHHHHHhhh
Q 014899 232 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 307 (416)
Q Consensus 232 diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~----D~~e~I~kKI~k 307 (416)
.+.+.|| ++.|...+. +++++. +| .||||+... .+|.-. -+|+.|.+-+..
T Consensus 137 ~l~~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 137 LLYEALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHHHHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9999976 456655444 367776 55 699999742 222211 346666665554
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.44 E-value=8.2e-13 Score=117.12 Aligned_cols=63 Identities=44% Similarity=0.513 Sum_probs=53.7
Q ss_pred hhHHHHHhhhhccc---ceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014899 201 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 277 (416)
Q Consensus 201 YPvLQAADIl~~~a---divpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg 277 (416)
||+.|+||++.+.. |++++|.||.+|+++.++++++++ + ...|..+..+ +|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~---~--------------~~~p~~~~~~---~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---G--------------PARPFGLTFG---RVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC---C--------------CCCceEEEeC---CeECC-CC
Confidence 99999999999999 999999999999999999999976 1 2357776654 78776 55
Q ss_pred CCccccCC
Q 014899 278 LSKMSKSA 285 (416)
Q Consensus 278 ~~KMSKS~ 285 (416)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.83 E-value=2.1e-08 Score=96.28 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=110.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchhhh
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 161 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e~~ 161 (416)
.|||.+||||...++-+|..-+.. +..++=|=|.- + .....+....+.+++..+||+.+.- +|.||+-.+.-
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD----~--~R~~~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~~~y 81 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTD----P--ERSRPEYVESILEDLKWLGLDWDEG-PYRQSDRFDLY 81 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCC----C--CCCChHHHHHHHHHHHHcCCCCCCC-eeehhcCHHHH
Confidence 578999999999999999654443 45554444431 1 1223345567777888899998853 78899853221
Q ss_pred hHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHHHHHhhhh
Q 014899 162 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 241 (416)
Q Consensus 162 el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~y 241 (416)
+ ++-++....| |..+|=.--+.|=...+.++|.-|.|+..+-..-+.+++.||
T Consensus 82 ~------------------~~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 82 R------------------AYAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred H------------------HHHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 1 1111111111 566676666777778899999999999999999999999876
Q ss_pred CCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC----CCHHHHHHHhh
Q 014899 242 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 306 (416)
Q Consensus 242 g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~----D~~e~I~kKI~ 306 (416)
++.|...+.+ +|.+. +| +||||++.. .+|.-. -.|+.|..-+.
T Consensus 135 ---------------~~~P~~~H~p---ll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 135 ---------------WEPPRFYHFP---RLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred ---------------CCCCeEEEee---eeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 5678776654 77776 55 699999842 222211 34566665554
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.58 E-value=5.7e-07 Score=91.64 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=54.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHH--HHHHhhc--CcE-EEEEeCccee------------------c--C-C---C-C
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAI------------------T--L-P---Y-D 124 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~--~~~lQ~~--~~~-~i~IaDlhA~------------------t--~-~---~-~ 124 (416)
+..|-||+-|||.+||||+...+.- +.+.++. ++| +++.+|.|-- . . + + .
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4677889999999999998765522 4444443 565 6778999921 1 1 0 0 2
Q ss_pred HHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCch
Q 014899 125 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 158 (416)
Q Consensus 125 ~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~ 158 (416)
++-...+...+.+.+-.+|++.+ +|.+++..
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y 130 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMY 130 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCch
Confidence 34455566677777888999765 77777754
No 31
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.48 E-value=8.8e-07 Score=94.48 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=48.5
Q ss_pred cccceeecccchHH-HHHHHHHHHH-HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014899 212 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 289 (416)
Q Consensus 212 ~~adivpvG~DQ~~-hleLaRdiA~-r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 289 (416)
++.|+.|.|.||.. +..++++|++ .|+ .+.|..+... ++..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~---~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYE---LFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeee---eEEeC-CC-CcccccC---C
Confidence 57999999999999 9999999998 654 4567665443 55443 35 6999997 6
Q ss_pred CceecCC-----CHHHHH
Q 014899 290 SRINLLD-----PKDVIA 302 (416)
Q Consensus 290 s~I~L~D-----~~e~I~ 302 (416)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 8887765 555555
No 32
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.29 E-value=2.8e-06 Score=84.69 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=106.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh--
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-- 159 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-- 159 (416)
.|||.+||||+..++.+|..-+.. ++.++=|-|. ++ .....+....+.+++..+||+.+.- .|+||+-.+
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDGP-VLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHHHH
Confidence 467999999999999999765554 5677667664 22 2333455667888899999999863 677999542
Q ss_pred --hh----hHHHHHhhcccHHHHhhhhh--------HHHHhHhhCC-CC---------------------------c--c
Q 014899 160 --HV----ELMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN---------------------------V--G 195 (416)
Q Consensus 160 --~~----el~w~L~~~~~~~~l~R~~~--------~k~~~~~~~~-~~---------------------------~--~ 195 (416)
+. +..+.+.|.++-.++++..+ |--.-+.... +. . .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 21 22233669999888865431 1000000000 00 0 0
Q ss_pred c---------hhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCC
Q 014899 196 V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 266 (416)
Q Consensus 196 ~---------g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~ 266 (416)
+ |..+|=+-=+.|=...+.++|.=|.|....-..-..|.+.|+ ++.|+..+.+
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~p 227 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHLP 227 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEee
Confidence 1 222222222222233578999999998776655556666544 6778877764
Q ss_pred CCcccccCCCCCCccccCC
Q 014899 267 AGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 267 ~~~~l~~L~dg~~KMSKS~ 285 (416)
.|.+. +| +||||++
T Consensus 228 ---ll~~~-~g-~kLSKr~ 241 (299)
T PRK05710 228 ---LVLNA-DG-QKLSKQN 241 (299)
T ss_pred ---cccCC-CC-CcccccC
Confidence 77776 56 6999997
No 33
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.16 E-value=4.7e-05 Score=80.99 Aligned_cols=197 Identities=16% Similarity=0.163 Sum_probs=114.8
Q ss_pred eEEEecCCC--CcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEE
Q 014899 77 RIVSGVQPT--GSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 153 (416)
Q Consensus 77 ~i~sGi~PT--G~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 153 (416)
.|.+.|.|| |.+||||...++-+|.--+.. +..++=|-|.-. . ....+....+..++..+|||++. ..|.
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~----~--R~~~~~~~~i~~~L~WLGl~wDe-~py~ 76 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDK----E--RSTKEAVEAIFSGLKWLGLDWNG-EVIF 76 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc----c--ccChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 466778777 999999999999999644433 455555555411 1 12224445677778889999984 3789
Q ss_pred cCCchh----hhhHHH----HHhhcccHHHHhhhhh----------HHHHhHhh-------CC---------CC--c---
Q 014899 154 QSHVRA----HVELMW----LLSSATPIGWLNKMIQ----------FKEKSHKA-------GG---------EN--V--- 194 (416)
Q Consensus 154 QS~v~e----~~el~w----~L~~~~~~~~l~R~~~----------~k~~~~~~-------~~---------~~--~--- 194 (416)
||+-.+ +.+... .+-|+++-.+++.+.. |....+.. +. +. +
T Consensus 77 QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~ 156 (513)
T PRK14895 77 QSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIH 156 (513)
T ss_pred EeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEE
Confidence 999432 222221 1458888777764421 10000000 00 00 0
Q ss_pred --cchhhhh----------------hHHHHHhh---hhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 014899 195 --GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 253 (416)
Q Consensus 195 --~~g~l~Y----------------PvLQAADI---l~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~ 253 (416)
--|.+.+ |..+.|.+ ...+.|+|..|.||..|.-.-..+.+.|+
T Consensus 157 D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG--------------- 221 (513)
T PRK14895 157 DTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG--------------- 221 (513)
T ss_pred eecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC---------------
Confidence 0011111 22222211 22378999999999999888778877654
Q ss_pred CccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC------CCHHHHHHHhhh
Q 014899 254 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKR 307 (416)
Q Consensus 254 ~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~------D~~e~I~kKI~k 307 (416)
+..|...+.+ .|.+. +| +||||... ...+. =.|+.|.+-+..
T Consensus 222 ---~~~p~~~H~p---lv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 ---YAVPSMTHIP---LIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred ---CCCCeEEEEE---eEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 4567766654 77777 56 69999974 33332 146666666643
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.15 E-value=0.00021 Score=75.72 Aligned_cols=191 Identities=18% Similarity=0.185 Sum_probs=108.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh-h
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 160 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-~ 160 (416)
.|||.+||||...++-+|.--... +.+++=|=|. ++. ....+....+..++.-+||+++. ..|.||+-.+ |
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt----D~~--R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT----DLE--RNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCc--cCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 478999999999999999643332 4444444332 211 22233455677778889999885 3899998432 2
Q ss_pred hhHHHH-------HhhcccHHHHhhhhhH--------------HHHhH-------hhCC---------C-C-c-----cc
Q 014899 161 VELMWL-------LSSATPIGWLNKMIQF--------------KEKSH-------KAGG---------E-N-V-----GV 196 (416)
Q Consensus 161 ~el~w~-------L~~~~~~~~l~R~~~~--------------k~~~~-------~~~~---------~-~-~-----~~ 196 (416)
.+.+=. +-|+++-.+++.+..- .+... ..|. . . + -.
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~ 161 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR 161 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence 221111 4588887777533110 00000 0000 0 0 0 00
Q ss_pred hhhh----------------hhHHH---HHhhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 014899 197 ALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 257 (416)
Q Consensus 197 g~l~----------------YPvLQ---AADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f 257 (416)
|.+. +|..+ +.|=...+.|+|..|.||..|...-..+.+.|+ +
T Consensus 162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~ 223 (470)
T TIGR00464 162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------W 223 (470)
T ss_pred ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------C
Confidence 1111 12221 112222379999999999999988888887765 4
Q ss_pred cCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014899 258 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 307 (416)
Q Consensus 258 ~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 307 (416)
+.|...+.+ .+.++ +| +||||.. +.+.|.| .|+.+.+-+..
T Consensus 224 ~~p~~~H~p---~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 224 KIPVFAHLP---MILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CCCeEEEEe---eeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHH
Confidence 567666654 56665 56 6999997 3455442 46666665543
No 35
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.13 E-value=1.3e-05 Score=67.48 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=42.7
Q ss_pred EEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHH
Q 014899 78 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 137 (416)
Q Consensus 78 i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a 137 (416)
+++|-.| |.+|+||+.+ ++.+.++++ .+++.++|.++.+.+.+...++++.....+
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 5678888 9999999987 788888873 689999999998765566666665554443
No 36
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.93 E-value=6.7e-05 Score=79.56 Aligned_cols=192 Identities=19% Similarity=0.184 Sum_probs=112.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCe------EEEEcCC
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQSH 156 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~------~if~QS~ 156 (416)
.|||.+||||...++-+|.--....-.+|+=-|.+-.. ....+....+..++.-+||+.+.. -.|.||+
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~-----R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS~ 86 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQE-----RSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQSE 86 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC-----CCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehhc
Confidence 46799999999999999964333333344433332211 222334456667777899998864 1589998
Q ss_pred ch----hhhhHHH----HHhhcccHHHHhhhhh--HH-----------------HHhH--hhCC----------------
Q 014899 157 VR----AHVELMW----LLSSATPIGWLNKMIQ--FK-----------------EKSH--KAGG---------------- 191 (416)
Q Consensus 157 v~----e~~el~w----~L~~~~~~~~l~R~~~--~k-----------------~~~~--~~~~---------------- 191 (416)
-. ++.+... .+-|+++-.+|..... .+ +..+ ..|.
T Consensus 87 r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~ 166 (476)
T PRK01406 87 RLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVF 166 (476)
T ss_pred CHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEE
Confidence 43 2222211 1458888777754311 00 0000 0000
Q ss_pred ----------CCccchhh------hhhHHHHHhhhh---cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCC
Q 014899 192 ----------ENVGVALL------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 252 (416)
Q Consensus 192 ----------~~~~~g~l------~YPvLQAADIl~---~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~ 252 (416)
.+..++-+ -+|..+.||++- .+.|+|..|.||..|.-.-..+.+.|+
T Consensus 167 ~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG-------------- 232 (476)
T PRK01406 167 DDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG-------------- 232 (476)
T ss_pred EEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC--------------
Confidence 00011111 166667777743 578999999999999988888887765
Q ss_pred CCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhh
Q 014899 253 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIK 306 (416)
Q Consensus 253 ~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~ 306 (416)
++.|...+.+ .+.++ +| +||||.+. .+.+.| .|+.+.+=+.
T Consensus 233 ----~~~p~~~H~p---li~~~-~g-~klSKR~g----~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 233 ----WEVPVFAHLP---LILGP-DG-KKLSKRHG----ATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred ----CCCCeEEEee---eeeCC-CC-CcccCcCC----ccCHHHHHHCCCCHHHHHHHHH
Confidence 4567666654 56676 55 69999973 455542 4555555443
No 37
>PLN02627 glutamyl-tRNA synthetase
Probab=97.85 E-value=0.0023 Score=68.57 Aligned_cols=97 Identities=19% Similarity=0.205 Sum_probs=58.5
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE-----
Q 014899 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS----- 150 (416)
Q Consensus 77 ~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~----- 150 (416)
++=-.=.|||.+||||...++-+|.--... +++++=|=|. -.. ....+....+..++.-+||+.+...
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-D~~-----R~~~e~~~~I~~~L~WLGl~wDegp~~gg~ 120 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-DLA-----RSTKESEEAVLRDLKWLGLDWDEGPDVGGE 120 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-CCC-----CCChHHHHHHHHHHHHcCCCCCcCcccCCC
Confidence 333334566999999999999999754443 4444444332 211 2223444566677778999998642
Q ss_pred --EEEcCCchh----hhhHHH----HHhhcccHHHHhhh
Q 014899 151 --VFVQSHVRA----HVELMW----LLSSATPIGWLNKM 179 (416)
Q Consensus 151 --if~QS~v~e----~~el~w----~L~~~~~~~~l~R~ 179 (416)
-|+||+-.+ +.+... .+-|+++-.+++.+
T Consensus 121 ~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 121 YGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred CCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 599998432 222111 25588887776543
No 38
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.85 E-value=0.00012 Score=78.36 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=51.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHH--HHHHhhc--CcE-EEEEeCcc--------------------eecC-CC----C
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLH--------------------AITL-PY----D 124 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~--~~~lQ~~--~~~-~i~IaDlh--------------------A~t~-~~----~ 124 (416)
+..|-||+-|||.+||||+..++.. |.+..+. .++ +|+.+|.| .++. |. .
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 5788899999999999999776633 3444333 454 78889999 2222 11 1
Q ss_pred HHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCc
Q 014899 125 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV 157 (416)
Q Consensus 125 ~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v 157 (416)
..-...+-....+.+-.+||+ .+|+.|++.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~ 128 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQ 128 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHh
Confidence 222333334555556668996 478888874
No 39
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.76 E-value=0.00029 Score=69.52 Aligned_cols=174 Identities=17% Similarity=0.171 Sum_probs=99.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh-h
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 160 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-~ 160 (416)
.|||.+||||...++-+|.--... +.+++=|=|. ++. ....+....+..++.-+||++++. .++||+-.+ |
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDt----D~~--R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDL----DPP--REVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC----CCC--CCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 478999999999999999644333 4444444443 211 122344456777777889999864 578998533 2
Q ss_pred hhH---HH----HHhhcccHHHHhhhh-----hHHHHhHh----hCCC-----------Ccc-----chhhh--------
Q 014899 161 VEL---MW----LLSSATPIGWLNKMI-----QFKEKSHK----AGGE-----------NVG-----VALLT-------- 200 (416)
Q Consensus 161 ~el---~w----~L~~~~~~~~l~R~~-----~~k~~~~~----~~~~-----------~~~-----~g~l~-------- 200 (416)
.+- .. .+.|.++-.++++.. .|...-+. ...+ .+. .|.+.
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 211 11 145888887776441 11100000 0000 000 01111
Q ss_pred ---------hhHHHHHhh---hhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCC
Q 014899 201 ---------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 268 (416)
Q Consensus 201 ---------YPvLQAADI---l~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~ 268 (416)
||..+=|-. ...+.++|.=|.|....--.-.-|.+.|+ ++.|...+.+
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~p-- 220 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHLP-- 220 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEech--
Confidence 233322222 22468999999998876655555655543 6678766654
Q ss_pred cccccCCCCCCccccCCC
Q 014899 269 ARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 269 ~~l~~L~dg~~KMSKS~p 286 (416)
+|.+. +| +|+||++.
T Consensus 221 -ll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 221 -LVVNA-DG-EKLSKQNG 235 (272)
T ss_pred -hhhCC-CC-CeeeccCC
Confidence 77776 56 69999974
No 40
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.74 E-value=0.00016 Score=70.08 Aligned_cols=161 Identities=21% Similarity=0.180 Sum_probs=94.4
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCc-
Q 014899 80 SGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV- 157 (416)
Q Consensus 80 sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v- 157 (416)
.|-.|||.+||||...++-+|+--+.. +..++=|-|. ++............+.+++..+|++++ ..+.||+-
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt----D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r~ 79 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT----DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIASDRI 79 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC----CCCcccchHHHHHHHHHHHHHcCCCCC--CccchhccH
Confidence 456788999999999999888644322 3344334443 111101334445568888899999998 57899984
Q ss_pred hhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHH---hhhhcccceeecccchHHHHHHHHHHH
Q 014899 158 RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 158 ~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA---DIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
..+.+..=.|- .+-..|. ....+ +. ..+||..+=| |=...+.++|.-|.|-..+-..-.-+.
T Consensus 80 ~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~ 144 (240)
T cd09287 80 ELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIY 144 (240)
T ss_pred HHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHH
Confidence 33322221111 1111111 01111 11 1234544433 444568999999999988777666666
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 285 (416)
+.|+ ++.|...+.+ +|.. +| .||||.+
T Consensus 145 ~~Lg------------------~~~P~~~H~p---ll~~--~~-~kLSKR~ 171 (240)
T cd09287 145 EYFG------------------WEYPETIHWG---RLKI--EG-GKLSTSK 171 (240)
T ss_pred HHcC------------------CCCCcEEeee---eecC--CC-Ceecccc
Confidence 6554 5667766554 5542 45 7999997
No 41
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.65 E-value=0.00023 Score=68.92 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=88.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh-h
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 160 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-~ 160 (416)
.|||.+||||...++-+|..-... +..++=|=|. ++ .....+....+.+++..+||+.+ .+++||+-.+ +
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y 80 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT----NP--EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQL 80 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC----CC--cccchHHHHHHHHHHHHcCCCCC--CceecccCHHHH
Confidence 478999999999999998644332 4444433332 11 12334455677788889999999 5789999532 2
Q ss_pred hhHHHHH---hhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHH---HHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 161 VELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 161 ~el~w~L---~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQ---AADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
.+..-.| +...+ . . ..+ + ...+||..+ +.|=...+.++|.-|.|....-..-.-+.
T Consensus 81 ~~~~~~L~~~g~aY~-----------~-~-~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~ 142 (238)
T cd00807 81 YEYAEQLIKKGKAYV-----------H-H-RTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLC 142 (238)
T ss_pred HHHHHHHHHcCCeec-----------C-C-CCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHH
Confidence 2111111 11111 0 0 000 1 112345444 33445578999999999877655555555
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 286 (416)
+.|+ ++.|..+.-. .+ +. +| .|+||+..
T Consensus 143 ~aLg------------------~~~P~~~~~~---hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 143 DALR------------------LYRPHQWEFS---RL-NL-TY-TVMSKRKL 170 (238)
T ss_pred HHcC------------------CCCCceeEEE---EE-CC-CC-CCccCcCc
Confidence 5543 5567432211 22 33 56 69999973
No 42
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.64 E-value=0.00041 Score=69.36 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=37.1
Q ss_pred CCCcchhhhHHHHH-----HHHHHHhhcCcE-EEEEeCcceecCC------C--------------C-HHHHHHHHHHHH
Q 014899 84 PTGSIHLGNYLGAI-----KNWIALQNSYET-LFFIVDLHAITLP------Y--------------D-TQQLSKATRETA 136 (416)
Q Consensus 84 PTG~lHLGnylg~i-----~~~~~lQ~~~~~-~i~IaDlhA~t~~------~--------------~-~~~i~~~~~~~~ 136 (416)
|+|.+||||+.+.+ .++.+++ +++| +++-.|.|..-.. . . .+-.+++...+.
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHK 89 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 56999999998733 3344432 3565 4455687765320 0 1 122334445566
Q ss_pred HHHHHcCccCC
Q 014899 137 AIYLACGIDNS 147 (416)
Q Consensus 137 a~~lA~GlDp~ 147 (416)
+++.++|++.+
T Consensus 90 ~~l~~lgI~~D 100 (312)
T cd00668 90 EDFRRLGISYD 100 (312)
T ss_pred HHHHHhCcccc
Confidence 77788998665
No 43
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00028 Score=74.65 Aligned_cols=179 Identities=20% Similarity=0.182 Sum_probs=104.2
Q ss_pred EEEecCC--CCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 78 IVSGVQP--TGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 78 i~sGi~P--TG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
|.+=|.| ||.+||||...++-+|.--+.. +++++=|=|. ++. ....+....+..++.-+||+++.. +|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 5566655 5999999999999999643333 4555544442 221 222234445666777899999975 8999
Q ss_pred CCchh-hh-hHHHH------HhhcccHHHHhhhh-----------hHH---------HHhHhhCC----------C--Cc
Q 014899 155 SHVRA-HV-ELMWL------LSSATPIGWLNKMI-----------QFK---------EKSHKAGG----------E--NV 194 (416)
Q Consensus 155 S~v~e-~~-el~w~------L~~~~~~~~l~R~~-----------~~k---------~~~~~~~~----------~--~~ 194 (416)
|+..+ +. -..++ +-|.++-.+|+.+- .|. ++....+. . ..
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 99532 21 22222 34888886665541 111 01111000 0 00
Q ss_pred -------cchhhhhh------HHHHHhhhh------------cccceeecccchHHHHHHHHHHHHHHhhhhCCcccccc
Q 014899 195 -------GVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 249 (416)
Q Consensus 195 -------~~g~l~YP------vLQAADIl~------------~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~ 249 (416)
-.|.+..+ +++-+|+.. .+.++|.-|.|+..+=..-+-|-+.|+
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg----------- 231 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG----------- 231 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------
Confidence 01222232 333334332 368999999999887666666655543
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014899 250 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 250 g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 286 (416)
++.|...+.+ +|.+ -+| +||||++.
T Consensus 232 -------~~~P~~~H~~---li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 -------WPPPVYAHLP---LLLN-EDG-KKLSKRKG 256 (472)
T ss_pred -------CCCCcEEEee---eeec-CCC-CeecCccC
Confidence 6678877764 7777 455 69999974
No 44
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.49 E-value=0.00066 Score=69.29 Aligned_cols=69 Identities=23% Similarity=0.400 Sum_probs=32.4
Q ss_pred hhcccceeecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014899 210 LLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 210 l~~~adivpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 286 (416)
-.++.|+.|.|.|+.. -...+.+||+++ || .+.|..+.-. +-++ .|.+|||||.
T Consensus 231 ~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk- 287 (360)
T PF01921_consen 231 AALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK- 287 (360)
T ss_dssp HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S----------
T ss_pred hhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC-
Confidence 3357999999999999 999999999653 55 4566655432 2333 3446999997
Q ss_pred CCCCceecCC-----CHHHHHH
Q 014899 287 SDQSRINLLD-----PKDVIAN 303 (416)
Q Consensus 287 ~~~s~I~L~D-----~~e~I~k 303 (416)
++.|.+.| +||.++-
T Consensus 288 --G~~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 288 --GNGITPEEWLEYAPPESLRY 307 (360)
T ss_dssp -------HHHHHTTS-HHHHHH
T ss_pred --CCccCHHHHHHhcCHHHHHH
Confidence 57776653 5666654
No 45
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.45 E-value=0.00065 Score=71.16 Aligned_cols=89 Identities=25% Similarity=0.274 Sum_probs=56.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCch---
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR--- 158 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~--- 158 (416)
.|||.+||||...++-+|.--... ++.++=|=|. -.. ....+....+..++.-+||+.+. .|.||+-.
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-D~~-----R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~Y 78 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-DKE-----RNIEGKDKEILEILNLFGISWDK--LVYQSENLKFH 78 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-CCC-----cCChHHHHHHHHHHHHcCCCCCC--CeehhccHHHH
Confidence 488999999999999999654443 4444444332 211 12234445677777889999985 69999943
Q ss_pred -hhhhHHHH----HhhcccHHHHhhh
Q 014899 159 -AHVELMWL----LSSATPIGWLNKM 179 (416)
Q Consensus 159 -e~~el~w~----L~~~~~~~~l~R~ 179 (416)
++.+...- +-|+++-.+++.+
T Consensus 79 ~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 79 RQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 22222221 4588888777544
No 46
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.45 E-value=0.00077 Score=72.00 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=58.7
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
.|.+=|. |||.+||||.-.++-+|.--....-.+++=-|. |++. ....+....+..++.-+|++++. ++.|
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiED---TDp~--R~~~e~~~~I~~dL~WLGl~wD~--~~~q 83 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDD---TNPS--KEKAEFEESIIEDLGKIEIKPDS--VSFT 83 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECC---CCCC--ccchHHHHHHHHHHHHhCCCCCC--Cccc
Confidence 3555554 569999999999999996433322233443343 2221 33445566777788889999984 7899
Q ss_pred CCchh-hhhHHHH-------HhhcccHHHHh
Q 014899 155 SHVRA-HVELMWL-------LSSATPIGWLN 177 (416)
Q Consensus 155 S~v~e-~~el~w~-------L~~~~~~~~l~ 177 (416)
|+..+ +.+.+-. +.|.++-.+++
T Consensus 84 Sdr~~~y~~~a~~Li~~G~AY~C~cs~eel~ 114 (523)
T PLN03233 84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMK 114 (523)
T ss_pred cccHHHHHHHHHHHHHcCCeEecCCCHHHHH
Confidence 99643 2222222 45888877764
No 47
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.40 E-value=0.013 Score=62.09 Aligned_cols=73 Identities=8% Similarity=-0.052 Sum_probs=46.0
Q ss_pred CceEE-EecCCCCcchhhhHHHHHH--HHHHHhhc--CcEEEEEe-Cccee-c-C-----CCCHH-HHHHHHHHHHHHHH
Q 014899 75 KKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQNS--YETLFFIV-DLHAI-T-L-----PYDTQ-QLSKATRETAAIYL 140 (416)
Q Consensus 75 ~~~i~-sGi~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i~Ia-DlhA~-t-~-----~~~~~-~i~~~~~~~~a~~l 140 (416)
.+++| +|--|.|.+||||..+.+. -+.++++. ++|++... |.|.- + . ..++. -...++..+.+++.
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45666 8999999999999876542 23444443 67876654 33321 1 0 12443 34556677888999
Q ss_pred HcCc-cCC
Q 014899 141 ACGI-DNS 147 (416)
Q Consensus 141 A~Gl-Dp~ 147 (416)
++|+ .|+
T Consensus 103 ~Lgi~~~d 110 (463)
T PRK00260 103 ALNVLPPD 110 (463)
T ss_pred HcCCCCCC
Confidence 9999 554
No 48
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.35 E-value=0.0014 Score=68.98 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=55.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh-h
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 160 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-~ 160 (416)
.|||.+||||...++.+|.--... ++.++=|=|. -. ..........+..++..+|++.+. .|.||+..+ +
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-D~-----~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~y 81 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-DL-----ERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDRY 81 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-Cc-----ccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHHH
Confidence 477999999999999999644333 4444444332 11 122334455677778889999984 799998532 1
Q ss_pred hhHH-------HHHhhcccHHHHhh
Q 014899 161 VELM-------WLLSSATPIGWLNK 178 (416)
Q Consensus 161 ~el~-------w~L~~~~~~~~l~R 178 (416)
.+.. ..+-|+++-.+|+.
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~ 106 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELEL 106 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHH
Confidence 1111 12458888777754
No 49
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.29 E-value=0.0015 Score=70.73 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=101.4
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEE
Q 014899 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 153 (416)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 153 (416)
.|.+=|. |||.|||||...++.+|.--+.. +.+++=| |. |++. ....+....+..++..+||+++. .+++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRi-ED---TDp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~ 124 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRF-DD---TNPS--KEKEHFEQAILDDLATLGVSWDV-GPTY 124 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-cC---CCCc--ccCHHHHHHHHHHHHHCCCCCCC-ceee
Confidence 4556555 56999999999999999644433 3444333 33 2222 33445666778888899999885 3678
Q ss_pred cCCchhh-hhHHHH-------HhhcccHHHHhhhh------hHHHHh--------Hh--hCC--C--------------C
Q 014899 154 QSHVRAH-VELMWL-------LSSATPIGWLNKMI------QFKEKS--------HK--AGG--E--------------N 193 (416)
Q Consensus 154 QS~v~e~-~el~w~-------L~~~~~~~~l~R~~------~~k~~~--------~~--~~~--~--------------~ 193 (416)
||+..+. .+.+-. +.|.++-.+++... .+.+.. +. .+. + +
T Consensus 125 QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n 204 (601)
T PTZ00402 125 SSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNEN 204 (601)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCC
Confidence 9996432 222211 35777755553221 111110 00 000 0 0
Q ss_pred ccchh------------------hhhhHHHHHhhh---hcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCC
Q 014899 194 VGVAL------------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 252 (416)
Q Consensus 194 ~~~g~------------------l~YPvLQAADIl---~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~ 252 (416)
.+++- -.||..+=|-.+ ..+.++|..|.|...+-..-.-|.+.|+
T Consensus 205 ~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg-------------- 270 (601)
T PTZ00402 205 KAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG-------------- 270 (601)
T ss_pred CCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC--------------
Confidence 00100 034444333222 2468999999999888777777766654
Q ss_pred CCccccCCceecCCCCcccccCCCCCCccccCC
Q 014899 253 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 253 ~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 285 (416)
++.|...+.+ + .++ +| .||||+.
T Consensus 271 ----~~~P~~~h~~---r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 271 ----IRKPIVEDFS---R-LNM-EY-SVMSKRK 293 (601)
T ss_pred ----CCCceEEEEe---e-EcC-CC-CcccccC
Confidence 5667666543 4 455 56 5999996
No 50
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.003 Score=66.78 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=48.6
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHH-H--HHHhhc-CcE-EEEEeCcceecC--CC---CHHHHHHHH-----------
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKN-W--IALQNS-YET-LFFIVDLHAITL--PY---DTQQLSKAT----------- 132 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~-~--~~lQ~~-~~~-~i~IaDlhA~t~--~~---~~~~i~~~~----------- 132 (416)
...+|=||+-|||.+||||+--.+.- . ..|-+. +++ +|+++|.+-=+. +. +++.+.++.
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 56788999999999999997443321 1 123232 444 778888765543 21 334444432
Q ss_pred -------HHHHH----HHHHcCccCCCeEEEEcCCc
Q 014899 133 -------RETAA----IYLACGIDNSKASVFVQSHV 157 (416)
Q Consensus 133 -------~~~~a----~~lA~GlDp~k~~if~QS~v 157 (416)
..+.+ .+--+|+++ +++.+|+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 33333 334578875 68888873
No 51
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.23 E-value=0.0029 Score=63.70 Aligned_cols=174 Identities=20% Similarity=0.159 Sum_probs=93.6
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh--
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-- 159 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-- 159 (416)
.|||.|||||...++-+|.--... +..++=|=|. ++. ....+....+..++..+||+++ -..+.||+-.+
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt----D~~--R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y 81 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT----DPE--RCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY 81 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS----STT--TCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc----ccc--cchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence 478999999999999999644333 3444444342 211 2233455567777888999987 45788998543
Q ss_pred --hhhHHH----HHhhcccHHHHhhhhhH------------HHH--------hH---hhCC----------C-C------
Q 014899 160 --HVELMW----LLSSATPIGWLNKMIQF------------KEK--------SH---KAGG----------E-N------ 193 (416)
Q Consensus 160 --~~el~w----~L~~~~~~~~l~R~~~~------------k~~--------~~---~~~~----------~-~------ 193 (416)
+.+... .+.|.++-.+++....- ... .+ ..+. + .
T Consensus 82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~ 161 (314)
T PF00749_consen 82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL 161 (314)
T ss_dssp HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence 222221 24577776665543222 100 00 0000 0 0
Q ss_pred ------ccc------------hhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 014899 194 ------VGV------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 255 (416)
Q Consensus 194 ------~~~------------g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~ 255 (416)
... |..+|-+-=+.|=...+.++|.=|.|-...-..-.-|.+.|+
T Consensus 162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg----------------- 224 (314)
T PF00749_consen 162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG----------------- 224 (314)
T ss_dssp TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT-----------------
T ss_pred cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC-----------------
Confidence 001 222222222223233579999999998887776667766654
Q ss_pred cccCCceecCCCCcccccCCCCCCccccCCC
Q 014899 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 256 ~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 286 (416)
++.|...+.+ .+.+- +| +|+||++.
T Consensus 225 -~~~P~~~H~p---l~l~~-~g-~kLSKR~~ 249 (314)
T PF00749_consen 225 -WPPPPYAHLP---LILNE-DG-KKLSKRKG 249 (314)
T ss_dssp -SSS-EEEEEE---EEEET-TS-SBSSTTCS
T ss_pred -CCCcceEeee---eeecC-CC-cEechhhc
Confidence 4557666543 66665 56 69999974
No 52
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.23 E-value=0.0028 Score=68.53 Aligned_cols=180 Identities=19% Similarity=0.155 Sum_probs=102.9
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
.+..-+=.|||.+||||...++.+|.--... +.+++=|-|. ++.......+....+.+++..+|++++. ++.|
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD~--~~~q 175 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWDE--VVIQ 175 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCCC--ccCc
Confidence 4555666777999999999999888533322 3444444443 2211122334445677788889999984 7899
Q ss_pred CCchh-hhhHHH-------HHhhcccHHHHhhhhh------HH-----HHhH---h--hC-------------C---CCc
Q 014899 155 SHVRA-HVELMW-------LLSSATPIGWLNKMIQ------FK-----EKSH---K--AG-------------G---ENV 194 (416)
Q Consensus 155 S~v~e-~~el~w-------~L~~~~~~~~l~R~~~------~k-----~~~~---~--~~-------------~---~~~ 194 (416)
|+..+ +.+.+- .+.|.++-.++++... +. +... . .| + .+.
T Consensus 176 Sdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~ 255 (567)
T PRK04156 176 SDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNP 255 (567)
T ss_pred ccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCC
Confidence 99532 211111 1456666555532210 01 0000 0 00 0 000
Q ss_pred c------------------chhhhhhHHHHH---hhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 014899 195 G------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 253 (416)
Q Consensus 195 ~------------------~g~l~YPvLQAA---DIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~ 253 (416)
+ -+-..||.++=| |..+.+.|+|.-|.|...+-..-..+.+.|+
T Consensus 256 ~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg--------------- 320 (567)
T PRK04156 256 SVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG--------------- 320 (567)
T ss_pred CccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC---------------
Confidence 0 011235655433 3344679999999999888777777766654
Q ss_pred CccccCCceecCCCCcccccCCCCCCccccCC
Q 014899 254 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 254 ~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 285 (416)
++.|...+.+ +|. + +| .|||||.
T Consensus 321 ---~~~P~~~H~~---~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ---WEYPETIHYG---RLK-I-EG-FVLSTSK 343 (567)
T ss_pred ---CCCceEEEcc---eec-C-CC-ceeeccc
Confidence 5567777664 664 4 56 5999996
No 53
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.22 E-value=0.0013 Score=62.22 Aligned_cols=150 Identities=16% Similarity=0.197 Sum_probs=76.6
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcEE-EEEeCccee-cCC-----CCHHHHH-HHHHHHHHHHHHcCccC
Q 014899 79 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAI-TLP-----YDTQQLS-KATRETAAIYLACGIDN 146 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~-i~IaDlhA~-t~~-----~~~~~i~-~~~~~~~a~~lA~GlDp 146 (416)
||+=-|+|.+||||..+++ .-+.++.+. ++|+ ....|.|.. +.. ..|.++. .....+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5667789999999987754 123333333 5664 333433321 110 1233333 33356677888899876
Q ss_pred CCeEEEEcCCchhhhhHHHHHhhcccHHHHhhh-hhHHHHh------HhhCCC-Cc----cchhhhhhH---HHHHhhhh
Q 014899 147 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQFKEKS------HKAGGE-NV----GVALLTYPV---LMASDILL 211 (416)
Q Consensus 147 ~k~~if~QS~v~e~~el~w~L~~~~~~~~l~R~-~~~k~~~------~~~~~~-~~----~~g~l~YPv---LQAADIl~ 211 (416)
+ .++..|+........|- .|... ..+.... ..++.. .. +=|..+|.. -.+.|=+.
T Consensus 86 d--~~~~es~~~~~~~~~i~--------~L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~ 155 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVE--------LLEELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFE 155 (212)
T ss_pred c--eecchhhhhhHHHHHHH--------HHHHCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccchHHHHHHHHHHHh
Confidence 4 34455553221111111 01000 0000000 000000 00 225566652 22222223
Q ss_pred ccccee--ecccchHHHHHHHHHHHHHHh
Q 014899 212 YQSDFV--PVGEDQKQHLELTRELAERVN 238 (416)
Q Consensus 212 ~~adiv--pvG~DQ~~hleLaRdiA~r~n 238 (416)
+++|.+ .+|.||..|+.--+.+++.++
T Consensus 156 ~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 156 RGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred cCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 578888 999999999999999999876
No 54
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.17 E-value=0.00097 Score=71.30 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=97.1
Q ss_pred EEEecCCCCcchhhhHHHHHHH--HHHHhhc--CcEE--EEEeCcceecCC------CCHHHHH-HHHHHHHHHHHHcCc
Q 014899 78 IVSGVQPTGSIHLGNYLGAIKN--WIALQNS--YETL--FFIVDLHAITLP------YDTQQLS-KATRETAAIYLACGI 144 (416)
Q Consensus 78 i~sGi~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~--i~IaDlhA~t~~------~~~~~i~-~~~~~~~a~~lA~Gl 144 (416)
-|+|--|+|.+|+||.-+++.- +.++.+. ++|+ .-+.||-.-+.. ..|+.+. .....+.++|..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3668999999999998776522 3344443 5653 345565432210 1233333 344567778888999
Q ss_pred cCCCeEEEEcCCchhhhhHHHHHhhcccHHHHh----hhhhHHHHhHhhCCC-C----ccchhhhhhHHHHHhhhhc---
Q 014899 145 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLN----KMIQFKEKSHKAGGE-N----VGVALLTYPVLMASDILLY--- 212 (416)
Q Consensus 145 Dp~k~~if~QS~v~e~~el~w~L~~~~~~~~l~----R~~~~k~~~~~~~~~-~----~~~g~l~YPvLQAADIl~~--- 212 (416)
.++ .+++.|+........+++.....-|-+. ...-|. ...++++ . -+=|..+|. +.||-+.
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~~~~k 268 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEFGDDKDRVLIKSDGTYTYF---TRDIAYHLYK 268 (507)
T ss_pred eee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhhCCCCCeEEEECCCCccch---HHHHHHHHHH
Confidence 875 3455554321111122211111000000 000000 0011100 0 022555663 3355442
Q ss_pred ----ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--c-eecCCCCcccccCCCCCCccccCC
Q 014899 213 ----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 213 ----~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P--~-~l~~~~~~~l~~L~dg~~KMSKS~ 285 (416)
+--+-.+|.||..|+.-...+++.++. ..+ . .++... .++-+ .+| +|||||.
T Consensus 269 ~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~------------------~~~~~~~~~h~~~-glv~~-~~g-~KMSkR~ 327 (507)
T PRK01611 269 FERFDRVIYVVGADHHGHFKRLKAALKALGY------------------DPDALEVLLHQMV-GLVRG-GEG-VKMSTRA 327 (507)
T ss_pred HhhcCEEEEEECCChHHHHHHHHHHHHHcCC------------------CcccceEEEEEEE-EeeEC-CCC-CcccCCC
Confidence 234559999999999999999988662 111 1 122111 12222 244 6999997
Q ss_pred CCCCCceecCCCHHH
Q 014899 286 PSDQSRINLLDPKDV 300 (416)
Q Consensus 286 p~~~s~I~L~D~~e~ 300 (416)
|+.|.+.|==++
T Consensus 328 ---Gn~i~l~dll~~ 339 (507)
T PRK01611 328 ---GNVVTLDDLLDE 339 (507)
T ss_pred ---CceeEHHHHHHH
Confidence 688888664444
No 55
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.01 E-value=0.0027 Score=63.75 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=43.9
Q ss_pred CCCcchhhhHHHHHHH--HHHHhh--cCcEE-EEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCccCCCeE
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQN--SYETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSKAS 150 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~--~~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k~~ 150 (416)
|+|.+||||..+.+.. +.++++ +++|. +.-.|.|..-. ..++ +-.++....+.+++.++|+.++- .
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~-~ 89 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDW-R 89 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceec-c
Confidence 5799999998775522 333433 35664 44466664321 1133 33455566777888899997662 1
Q ss_pred EEEcCCchhhhh
Q 014899 151 VFVQSHVRAHVE 162 (416)
Q Consensus 151 if~QS~v~e~~e 162 (416)
.+..+..++|.+
T Consensus 90 ~~~~t~~~~~~~ 101 (314)
T cd00812 90 REFTTCDPEYYK 101 (314)
T ss_pred cccccCCHHHHH
Confidence 222333444443
No 56
>PLN02907 glutamate-tRNA ligase
Probab=96.99 E-value=0.0045 Score=68.91 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=56.5
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
.|.+=|. |||.+||||.-.++.+|.--....-.+++==|. |++. ....+....+..++.-+|+++++ ++.|
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eD---Tdp~--r~~~e~~~~I~~dl~wLG~~~d~--~~~q 285 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDD---TNPS--KESDEFVENILKDIETLGIKYDA--VTYT 285 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC---CCCC--cCChHHHHHHHHHHHHcCCCCCC--cccc
Confidence 4666665 559999999999999985332222233443344 2222 22234555677777889999985 6889
Q ss_pred CCchh-hhhHHHH-------HhhcccHHHHh
Q 014899 155 SHVRA-HVELMWL-------LSSATPIGWLN 177 (416)
Q Consensus 155 S~v~e-~~el~w~-------L~~~~~~~~l~ 177 (416)
|+..+ +.+.+-. +.|.++..++.
T Consensus 286 S~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~ 316 (722)
T PLN02907 286 SDYFPQLMEMAEKLIKEGKAYVDDTPREQMR 316 (722)
T ss_pred cccHHHHHHHHHHHHHcCCeeecCCCHHHHH
Confidence 99643 2222111 34677766554
No 57
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.93 E-value=0.0089 Score=56.99 Aligned_cols=71 Identities=11% Similarity=-0.007 Sum_probs=43.9
Q ss_pred ceEEEecCCCCcchhhhHHHHHH--HHHHHhhc--CcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLAC 142 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~ 142 (416)
....+|-=|-|.+||||....+. -+.++++. ++|++.. .|.|..-. ..++ +-.+.++..+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 44556888889999999765441 13333333 5776554 45554311 1244 44556667788888899
Q ss_pred CccC
Q 014899 143 GIDN 146 (416)
Q Consensus 143 GlDp 146 (416)
|+.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9986
No 58
>PLN02859 glutamine-tRNA ligase
Probab=96.82 E-value=0.0049 Score=68.59 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=56.7
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcC
Q 014899 78 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 155 (416)
Q Consensus 78 i~sGi--~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS 155 (416)
|.+=| .|||.+||||.-.++.+|.--+...-.+++=-|.+ ++. ....+....+..++.-+|++|++ +++||
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT---dp~--r~~~e~~~~I~edL~WLG~~~d~--~~~qS 337 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT---NPE--AEKKEYIDHIEEIVEWMGWEPFK--ITYTS 337 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC---CCC--ccchHHHHHHHHHHHHcCCCCCC--ccccc
Confidence 44545 46699999999999989864333322333433442 222 23334555666777789999985 68899
Q ss_pred Cch-hhhhHHHH-------HhhcccHHHHh
Q 014899 156 HVR-AHVELMWL-------LSSATPIGWLN 177 (416)
Q Consensus 156 ~v~-e~~el~w~-------L~~~~~~~~l~ 177 (416)
+.. ++-+.+-. +.|.++-.+++
T Consensus 338 d~f~~~Y~~A~~Li~~G~AY~C~ct~eei~ 367 (788)
T PLN02859 338 DYFQELYELAVELIRRGHAYVDHQTPEEIK 367 (788)
T ss_pred HhHHHHHHHHHHHHHcCCeEeccCCHHHHH
Confidence 965 33332222 34777766554
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.62 E-value=0.05 Score=58.68 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=57.8
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcC
Q 014899 78 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 155 (416)
Q Consensus 78 i~sGi--~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS 155 (416)
|.+=| .|||.+||||.-.++.+|.--+...-.+++=-|.+ ++. ....+....+..++.-+|++++. .+++||
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT---d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~qS 103 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT---NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYAS 103 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceeee
Confidence 44555 45699999999999999864333323344433442 222 23334555677778889999943 368899
Q ss_pred Cchh-hhhHHHH-------HhhcccHHHHh
Q 014899 156 HVRA-HVELMWL-------LSSATPIGWLN 177 (416)
Q Consensus 156 ~v~e-~~el~w~-------L~~~~~~~~l~ 177 (416)
+..+ +.+.+.. +.|.++-.+++
T Consensus 104 ~r~~~~y~~a~~Li~~G~AY~c~cs~eei~ 133 (554)
T PRK05347 104 DYFDQLYEYAVELIKKGKAYVDDLSAEEIR 133 (554)
T ss_pred cCHHHHHHHHHHHHHcCCEeeCCCCHHHHH
Confidence 8643 4333333 34788776654
No 60
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.34 E-value=0.049 Score=59.00 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=58.2
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEE
Q 014899 76 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 152 (416)
Q Consensus 76 ~~i~sGi~P--TG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if 152 (416)
-.|.+=|.| ||.+||||...++.+|.--+.. +.+++=+=|. ++. ....+....+..++..+|++++. ++
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT----Dp~--R~~~e~~~~I~edL~wLGi~~d~--~~ 163 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT----DPR--RVKPEAYDMILEDLDWLGVKGDE--VV 163 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC----Ccc--cccHHHHHHHHHHHHHcCCCCCc--cc
Confidence 356666655 5999999999999888533322 3344333332 222 33334566777888889999984 78
Q ss_pred EcCCchh-hhhHHHH-------HhhcccHHHHh
Q 014899 153 VQSHVRA-HVELMWL-------LSSATPIGWLN 177 (416)
Q Consensus 153 ~QS~v~e-~~el~w~-------L~~~~~~~~l~ 177 (416)
.||+..+ +.+.+-. +.|.++-.++.
T Consensus 164 ~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 164 YQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred cccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 9999532 2222211 45777766664
No 61
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.27 E-value=0.056 Score=58.42 Aligned_cols=93 Identities=13% Similarity=0.008 Sum_probs=58.0
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEE
Q 014899 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 153 (416)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 153 (416)
.|.+=|. |||.|||||...++.+|.--+.. +.+++=| |.+ ++. ....+....+.+++.-+|+++++ ++.
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRi-EDT---Dp~--r~~~e~~~~I~~dL~wLGi~~D~--~~~ 122 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRY-DDT---NPE--TEEQVYIDAIMEMVKWMGWKPDW--VTF 122 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEE-CCC---Ccc--ccChHHHHHHHHHHHHcCCCCCC--CCc
Confidence 3555554 56999999999999898643333 3444333 332 221 23345566777788889999985 568
Q ss_pred cCCchh-hhhHHHH-------HhhcccHHHHh
Q 014899 154 QSHVRA-HVELMWL-------LSSATPIGWLN 177 (416)
Q Consensus 154 QS~v~e-~~el~w~-------L~~~~~~~~l~ 177 (416)
||++.+ +.+.+-. +.|.++-.+++
T Consensus 123 qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~ 154 (574)
T PTZ00437 123 SSDYFDQLHEFAVQLIKDGKAYVDHSTPDELK 154 (574)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEcCCCHHHHH
Confidence 998654 3222222 34777776664
No 62
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=95.27 E-value=0.2 Score=53.29 Aligned_cols=73 Identities=12% Similarity=-0.051 Sum_probs=44.4
Q ss_pred ceEEEecCCCCcchhhhHHHHHHH--HHHHhh--cCcEEEEEe-Ccceec--C-----CCCHH-HHHHHHHHHHHHHHHc
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAIT--L-----PYDTQ-QLSKATRETAAIYLAC 142 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~Ia-DlhA~t--~-----~~~~~-~i~~~~~~~~a~~lA~ 142 (416)
....+|.-|-|.+||||..+.+.- +.++++ .++|.+..+ |.|.-- . ..++. -...++..+..++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 345578888899999998765521 334333 367765543 555321 0 12443 3345566778888899
Q ss_pred CccCCC
Q 014899 143 GIDNSK 148 (416)
Q Consensus 143 GlDp~k 148 (416)
|+.++.
T Consensus 103 gI~~d~ 108 (465)
T TIGR00435 103 NVLPPD 108 (465)
T ss_pred CCCCCc
Confidence 997543
No 63
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.15 E-value=0.074 Score=57.12 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=54.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh-hh
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HV 161 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e-~~ 161 (416)
.|||.+||||.-.++.+|.--+...-.+++=-|.+ ++. ....+....+.+++.-+|++++. .+++||+..+ +.
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT---d~~--r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~~ 81 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT---NPV--KEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDELY 81 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC---Ccc--cCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHHH
Confidence 58899999999999999864333322333433432 221 23334555777778889999953 3677998643 32
Q ss_pred hHHHH-------HhhcccHHHHhh
Q 014899 162 ELMWL-------LSSATPIGWLNK 178 (416)
Q Consensus 162 el~w~-------L~~~~~~~~l~R 178 (416)
+.+-. +.|.++-.++++
T Consensus 82 ~~a~~Li~~G~AY~c~cs~eel~~ 105 (522)
T TIGR00440 82 RYAEELIKKGLAYVDELTPEEIRE 105 (522)
T ss_pred HHHHHHHHcCCEEeecCCHHHHHH
Confidence 22211 457887666543
No 64
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=94.68 E-value=0.12 Score=58.06 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=56.9
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEE
Q 014899 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 153 (416)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 153 (416)
.|.+=|. |||.+||||...++.+|.--+.. +.+++=+ |. |++. ....+....+..++.-+|++++.. +++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~-eD---Td~~--r~~~e~~~~I~~dl~wLG~~wd~~-~~~ 103 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRM-DD---TNPE--TEDTEYVEAIKDDVRWLGFDWGEH-LYY 103 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEe-CC---CCCC--cCChHHHHHHHHHHHHcCCCCCCC-ceE
Confidence 3555554 56999999999999898543332 3444333 33 2222 233345556777778899998743 688
Q ss_pred cCCchh-h---hhHHH----HHhhcccHHHHhh
Q 014899 154 QSHVRA-H---VELMW----LLSSATPIGWLNK 178 (416)
Q Consensus 154 QS~v~e-~---~el~w----~L~~~~~~~~l~R 178 (416)
||+..+ | ++..+ .+.|.++-.++++
T Consensus 104 qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~ 136 (771)
T PRK14703 104 ASDYFERMYAYAEQLIKMGLAYVDSVSEEEIRE 136 (771)
T ss_pred eecCHHHHHHHHHHHHHcCCcccCcCCHHHHHH
Confidence 999642 2 22111 1457777665543
No 65
>PLN02224 methionine-tRNA ligase
Probab=93.78 E-value=0.45 Score=52.39 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=57.8
Q ss_pred ccceeeeecccCCCCCCCCCCCCCCceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCcceec--C-
Q 014899 51 CGFRCYCNVSLSEPTAPVASSSSVKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAIT--L- 121 (416)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~t--~- 121 (416)
.+.|..| ..+...+ .......+..|-+++ -|+|.+||||..+.+.. +.++++. ++|++ .-.|-|..- .
T Consensus 49 ~~~~~~~-~~~~~~~--~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~ 125 (616)
T PLN02224 49 SGKRALY-CTSSSQE--STVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATS 125 (616)
T ss_pred cccceee-ccCCCcc--cCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHH
Confidence 4566666 3333333 222222346777777 77899999998775522 3444443 57654 447888632 1
Q ss_pred ----CCC-HHHHHHHHHHHHHHHHHcCccCC
Q 014899 122 ----PYD-TQQLSKATRETAAIYLACGIDNS 147 (416)
Q Consensus 122 ----~~~-~~~i~~~~~~~~a~~lA~GlDp~ 147 (416)
..+ .+.+++++..+.+.+.++|++++
T Consensus 126 A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 126 AAANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 123 36667777788888999999887
No 66
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=91.52 E-value=0.52 Score=48.79 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=12.9
Q ss_pred CccchHHHHHHhhcCCCHH
Q 014899 324 PECNNLLSIYQLISGKTKG 342 (416)
Q Consensus 324 p~v~~ll~i~~~~s~~~~e 342 (416)
...+.+.++.+++.+.+..
T Consensus 280 ~q~~la~ei~~~vhg~~~~ 298 (377)
T TIGR00234 280 VKENLAKEITKYVHGEEAA 298 (377)
T ss_pred HHHHHHHHHHHHhcCHHHH
Confidence 4456778888888776443
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=91.19 E-value=0.68 Score=51.45 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=52.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 140 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 140 (416)
+..|.|++ -|+|.+||||..+.+.. +.++++. ++|+++- .|-|..-. ..++ +-..+++..+.++|.
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677777 68999999998775522 3344443 6776555 45444321 1244 445667778888999
Q ss_pred HcCccCCCeEEEEcCCchhh
Q 014899 141 ACGIDNSKASVFVQSHVRAH 160 (416)
Q Consensus 141 A~GlDp~k~~if~QS~v~e~ 160 (416)
++|++++. |....-++|
T Consensus 83 ~l~i~~d~---f~rtt~~~h 99 (673)
T PRK00133 83 GFGISFDN---YGSTHSEEN 99 (673)
T ss_pred HhCCCCCC---CccCCcHHH
Confidence 99998763 444443444
No 68
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=90.44 E-value=0.77 Score=49.62 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=46.4
Q ss_pred ceEEEecCCC--CcchhhhHHHH-H-----HHHHHHhhcCcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHH
Q 014899 76 KRIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAI 138 (416)
Q Consensus 76 ~~i~sGi~PT--G~lHLGnylg~-i-----~~~~~lQ~~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~ 138 (416)
..+++.-=|+ |.+||||..+. + ..+.+++ +++|++.. .|.|..-. ..++ +-..+++..+.++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 82 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKED 82 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455666666 99999998875 3 3343332 35775544 56664432 1244 4446677888899
Q ss_pred HHHcCccCCC
Q 014899 139 YLACGIDNSK 148 (416)
Q Consensus 139 ~lA~GlDp~k 148 (416)
+.++|++++.
T Consensus 83 ~~~l~i~~d~ 92 (556)
T PRK12268 83 FKKLGISYDL 92 (556)
T ss_pred HHHcCCcCCC
Confidence 9999999874
No 69
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=89.65 E-value=1.1 Score=48.73 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=52.0
Q ss_pred eEEEec-CCCCcchhhhHHHHHH--HHHHHhhc--CcEE-EEEeCcceecC-------CCCHH-HHHHHHHHHHHHHHHc
Q 014899 77 RIVSGV-QPTGSIHLGNYLGAIK--NWIALQNS--YETL-FFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLAC 142 (416)
Q Consensus 77 ~i~sGi-~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~~-~i~~~~~~~~a~~lA~ 142 (416)
.|-|.+ -|.|.+||||....|. -|.++|+. ++|+ ++-.|-|..-. ..+|+ -+.++......+|.++
T Consensus 8 ~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l 87 (558)
T COG0143 8 LVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKAL 87 (558)
T ss_pred EEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 343433 4679999999877663 37778775 5664 55578886532 22564 4556667788899999
Q ss_pred CccCCCeEEEEcCCchhh
Q 014899 143 GIDNSKASVFVQSHVRAH 160 (416)
Q Consensus 143 GlDp~k~~if~QS~v~e~ 160 (416)
+|+-+ .|..+.-++|
T Consensus 88 ~IsfD---~F~rTt~~~h 102 (558)
T COG0143 88 NISFD---NFIRTTSPEH 102 (558)
T ss_pred CCccc---ccccCCCHHH
Confidence 98754 3444444434
No 70
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=89.45 E-value=1.1 Score=46.67 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhhc--CcE-EEEEeCcceecC-------CCCHH-HHHHHHHHHHHHHHHcCccCCCe
Q 014899 83 QPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~--~~~lQ~~--~~~-~i~IaDlhA~t~-------~~~~~-~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
-|.|.|||||..+.+.. +.++++. ++| ++.-.|-|..-. ..+|+ -+.++...+.++|.++||+.+
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D-- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD-- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence 47799999998765522 3334433 565 455589997643 23554 556677788889999999987
Q ss_pred EEEEcCCchhh
Q 014899 150 SVFVQSHVRAH 160 (416)
Q Consensus 150 ~if~QS~v~e~ 160 (416)
.|.++.-++|
T Consensus 87 -~F~rTt~~~h 96 (391)
T PF09334_consen 87 -RFIRTTDDRH 96 (391)
T ss_dssp -EEEETTSHHH
T ss_pred -ceeCCCCHHH
Confidence 3666554444
No 71
>PLN02610 probable methionyl-tRNA synthetase
Probab=86.90 E-value=1.6 Score=49.66 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=51.4
Q ss_pred CceEEEec-CCCCcchhhhHHHH-H--HHHHHHhhc--CcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHH
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 139 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~-i--~~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 139 (416)
+..|.|.+ -|+|.+||||..+. + .-+.++++. ++|+++. .|-|..-. ..++ +-+.++...+...|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444444 35699999999863 4 225566664 5775544 67787643 1245 44455566777888
Q ss_pred HHcCccCCCeEEEEcCCchhhh
Q 014899 140 LACGIDNSKASVFVQSHVRAHV 161 (416)
Q Consensus 140 lA~GlDp~k~~if~QS~v~e~~ 161 (416)
.++|++.+. |....-++|.
T Consensus 98 ~~l~i~~D~---f~rT~~~~h~ 116 (801)
T PLN02610 98 DWFDISFDK---FGRTSTPQQT 116 (801)
T ss_pred HHcCCcccc---CccCCCHHHH
Confidence 999998873 3334444453
No 72
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=85.31 E-value=0.62 Score=53.60 Aligned_cols=58 Identities=26% Similarity=0.245 Sum_probs=35.6
Q ss_pred hcccceeecccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014899 211 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 287 (416)
Q Consensus 211 ~~~adivpvG~DQ~---~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~ 287 (416)
.+-+|+...|.||. .|-.+-..++- .| .+.|..++.. .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g--------------~~P~k~vl~H--G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-----RG--------------KAPYKQVLTH--GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-----cC--------------CCccceeEEe--eeEECC-CC-CCCCCCC--
Confidence 45689999999997 44455554443 23 1233344432 355554 56 7999997
Q ss_pred CCCceec
Q 014899 288 DQSRINL 294 (416)
Q Consensus 288 ~~s~I~L 294 (416)
||.|..
T Consensus 598 -GNvIdP 603 (912)
T PRK05743 598 -GNVIDP 603 (912)
T ss_pred -CCcCCH
Confidence 576654
No 73
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.87 E-value=1 Score=45.79 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=22.6
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCccee
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 119 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~ 119 (416)
|+|.+||||..+.+.. +.++++. ++|+ +.-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 4699999999875522 3344443 5764 444676655
No 74
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.19 E-value=3.5 Score=44.44 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=45.0
Q ss_pred eEEEec--CCCCcchhhhHHHHHHHHHHHhhcCcE-EEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCCeEEE
Q 014899 77 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYET-LFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVF 152 (416)
Q Consensus 77 ~i~sGi--~PTG~lHLGnylg~i~~~~~lQ~~~~~-~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~if 152 (416)
.|++-| +|||.+||||.-.++.+|- +|.+++- .|.-=|. |+|. +.++.+. .+..++--+||.|++++.
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqY-fa~~~~G~LIvRFDD---TNPaKE~~eFe~---~IleDl~~LgIkpd~~Ty- 271 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQY-FAQAYQGKLIVRFDD---TNPAKENEEFED---VILEDLSLLGIKPDRVTY- 271 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHH-HHHhcCceEEEEecC---CCcchhhHHHHH---HHHHHHHHhCcCcceeee-
Confidence 455555 6789999999988887764 5666542 2232343 3443 3344443 455566668999997553
Q ss_pred EcCCch
Q 014899 153 VQSHVR 158 (416)
Q Consensus 153 ~QS~v~ 158 (416)
-|++.
T Consensus 272 -TSDyF 276 (712)
T KOG1147|consen 272 -TSDYF 276 (712)
T ss_pred -chhhH
Confidence 36653
No 75
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=82.17 E-value=3.6 Score=46.81 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=47.8
Q ss_pred CceEEEecCCC--CcchhhhHHHHHHH--HHHHhhc--CcEEEE-EeCcceecC-------CCC-HHHHHHHHHHHHHHH
Q 014899 75 KKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAITL-------PYD-TQQLSKATRETAAIY 139 (416)
Q Consensus 75 ~~~i~sGi~PT--G~lHLGnylg~i~~--~~~lQ~~--~~~~i~-IaDlhA~t~-------~~~-~~~i~~~~~~~~a~~ 139 (416)
+..+++|+ |+ |.+|+||.++.+.+ +.++|.. ++|.+. -.|-|.+-. ..+ .+-..+++..+..++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 76 99999999875532 4455554 566544 457766532 113 355566777888899
Q ss_pred HHcCccCC
Q 014899 140 LACGIDNS 147 (416)
Q Consensus 140 lA~GlDp~ 147 (416)
.++|+..+
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99999655
No 76
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=81.52 E-value=0.69 Score=49.21 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=38.7
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCccCC
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 147 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~ 147 (416)
|+|.+||||..+.+.. +.+.++. ++|.+ +-.|.|..-. ..++ +-.+.+...+.+++.++|++++
T Consensus 12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 4599999997664421 3444443 57654 3356664311 1233 4445566677888889999876
No 77
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.08 E-value=1 Score=46.59 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCccee
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 119 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~ 119 (416)
|+|.+||||..+.+.. +.++++. ++|+ +.-.|-|.+
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~ 52 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGI 52 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCC
Confidence 5699999998875522 4455554 5664 444677743
No 78
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=81.06 E-value=3.3 Score=41.56 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=40.0
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCcceecC-------CCCHHH-HHHHHHHHHHHHHHcCccCCC
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~~~-i~~~~~~~~a~~lA~GlDp~k 148 (416)
|+|.+||||..+.+.. +.++++. ++|.+ .-.|.|..-. ..++++ .+.+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4599999999885522 3344443 56653 3467764421 124543 444556778888899998774
No 79
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=81.01 E-value=1.2 Score=48.54 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=41.8
Q ss_pred ceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceec
Q 014899 215 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 294 (416)
Q Consensus 215 divpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 294 (416)
-+-.+|.||..|+.-...++..++ ++.|.-+.. ..-++-++ .|||||. |+.|.+
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h----~~~~~V~~-~kmSkr~---Gn~V~~ 383 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIH----LNFGMVPL-GSMKTRR---GNVISL 383 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEE----EEEEEEEC-CCCCccC---CceeeH
Confidence 456799999999999999998865 333422221 11111123 5999997 789999
Q ss_pred CCCHHHHHH
Q 014899 295 LDPKDVIAN 303 (416)
Q Consensus 295 ~D~~e~I~k 303 (416)
.|=.++..+
T Consensus 384 ~dll~~~~~ 392 (566)
T TIGR00456 384 DNLLDEASK 392 (566)
T ss_pred HHHHHHHHH
Confidence 865555444
No 80
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=80.83 E-value=0.92 Score=52.11 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=34.1
Q ss_pred cccceeecccchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014899 212 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 288 (416)
Q Consensus 212 ~~adivpvG~DQ~~-hleLaRdiA~r~n~~--yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 288 (416)
|-+|+...|.||.. |+-... |++. ++. -+-|..++.. ..+.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999976 555442 2222 221 1344444433 24432 56 7999997
Q ss_pred CCceecC
Q 014899 289 QSRINLL 295 (416)
Q Consensus 289 ~s~I~L~ 295 (416)
||.|.+.
T Consensus 583 GNvVdp~ 589 (897)
T PRK12300 583 GNVIPLR 589 (897)
T ss_pred CCCCCHH
Confidence 6787653
No 81
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=80.54 E-value=1.3 Score=51.70 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=38.9
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
+-+|+...|.||. ++=++|-++.-+.. .| ..| ..++.. .+|..- +| +|||||. ||
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~-~~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHF-MG---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHh-cC---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 4578999999998 45677777665442 12 244 333332 355443 45 7999997 68
Q ss_pred ceecCC
Q 014899 291 RINLLD 296 (416)
Q Consensus 291 ~I~L~D 296 (416)
.|+..|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 887654
No 82
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=80.46 E-value=6.6 Score=41.80 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=36.0
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
+.+|+...|.||...+-.. .+|.-.. .| .+.|..++.. .++. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3578999999998853221 2222211 12 3456555543 2443 4 66 6999997 688
Q ss_pred eecCC
Q 014899 292 INLLD 296 (416)
Q Consensus 292 I~L~D 296 (416)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 88754
No 83
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=79.69 E-value=4.4 Score=44.84 Aligned_cols=65 Identities=15% Similarity=0.261 Sum_probs=41.0
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCccCCC
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
|+|.+||||..+.+.. +.++++. ++|+ ++-.|.|..-. ..++ +-+..+...+..++.++|++++.
T Consensus 15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4599999998765522 3444443 5664 45578776532 1244 34455556777888899998763
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.19 E-value=3.6 Score=46.71 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred CCceEEEec-CCCCcchhhhHHHH-----HHHHHHHhhcCcEEEEEeCcceecCC---------CCH-HHHHHHHHHHHH
Q 014899 74 VKKRIVSGV-QPTGSIHLGNYLGA-----IKNWIALQNSYETLFFIVDLHAITLP---------YDT-QQLSKATRETAA 137 (416)
Q Consensus 74 ~~~~i~sGi-~PTG~lHLGnylg~-----i~~~~~lQ~~~~~~i~IaDlhA~t~~---------~~~-~~i~~~~~~~~a 137 (416)
.++.|..-+ -|||.+|+||..+- +..+.++| +++|.+-+ -|||+=.| .+| .-...++.++..
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~-GyNVL~PM-GwdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ-GYNVLHPM-GWDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhc-CCeecccC-cccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 466776666 48999999996442 22333333 37888777 48887443 244 455677888888
Q ss_pred HHHHcCccCCCeEEE
Q 014899 138 IYLACGIDNSKASVF 152 (416)
Q Consensus 138 ~~lA~GlDp~k~~if 152 (416)
++.++|+.-|=..=|
T Consensus 112 qlk~lG~siDW~Ref 126 (814)
T COG0495 112 QLKSLGFSIDWRREF 126 (814)
T ss_pred HHHHhCCccccccce
Confidence 999999876644433
No 85
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=78.48 E-value=4 Score=43.88 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCcceecC-------CCCHH-HHHHHHHHHHHHHHHcCccCCC
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~~-~i~~~~~~~~a~~lA~GlDp~k 148 (416)
|+|.+||||....+.. +.+.++. ++|.+.. .|.|..-. ..++. -...+...+.+++.++|++++.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7899999998765422 3334443 5775444 55553321 12443 3445556777888899987663
No 86
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=77.76 E-value=1.4 Score=51.01 Aligned_cols=70 Identities=27% Similarity=0.326 Sum_probs=38.8
Q ss_pred cccceeecccchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014899 212 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 288 (416)
Q Consensus 212 ~~adivpvG~DQ~~-hleLaRdiA~r~n~~--yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 288 (416)
|-+|+...|.||.+ |+... + |++. ++. -+-|..++.. ..+.. +| +|||||.
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i---~~~~a~~~~-------------~~~Pk~i~~~--G~vl~--~G-~KMSKSl--- 625 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--I---FHHVAIFPE-------------KFWPRGIVVN--GYVML--EG-KKMSKSK--- 625 (938)
T ss_pred CCceEEEEeeccccchHHHH--H---HHHHHcCCc-------------cccCcEEEEe--ceEEe--CC-ccccCcC---
Confidence 45799999999976 55544 2 2221 111 0124444332 23332 56 7999997
Q ss_pred CCceecCC-----CHHHHHHHhhh
Q 014899 289 QSRINLLD-----PKDVIANKIKR 307 (416)
Q Consensus 289 ~s~I~L~D-----~~e~I~kKI~k 307 (416)
||.|.+.| +++.+|==+..
T Consensus 626 GNvI~p~d~i~~yGaDalRl~Ll~ 649 (938)
T TIGR00395 626 GNVLTLEQAVEKFGADVARLYIAD 649 (938)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHh
Confidence 67887653 34444444443
No 87
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=77.50 E-value=1.6 Score=49.90 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=32.3
Q ss_pred cccceeecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014899 212 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 288 (416)
Q Consensus 212 ~~adivpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 288 (416)
+-+|+...|.||.. |..+-.-++ + +| ...|..++.. .++... +| +|||||.
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~--~---~~--------------~~P~k~v~~h--G~vl~~-~G-~KMSKSk--- 616 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTA--L---FG--------------QAPYKNVITH--GFTLDE-KG-RKMSKSL--- 616 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHH--H---cC--------------CCChHhhEec--ceEECC-CC-CCcCCCC---
Confidence 34799999999965 222222221 1 12 1223333332 244443 55 6999997
Q ss_pred CCceecC
Q 014899 289 QSRINLL 295 (416)
Q Consensus 289 ~s~I~L~ 295 (416)
||.|...
T Consensus 617 GNvI~p~ 623 (861)
T TIGR00392 617 GNVVDPL 623 (861)
T ss_pred CCCCCHH
Confidence 6777654
No 88
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=75.50 E-value=18 Score=40.12 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=34.2
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
.+|+...|.||..++-+-= .-+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 3688999999987544310 00000012 5667666543 2332 2 45 7999997 6888
Q ss_pred ecCC
Q 014899 293 NLLD 296 (416)
Q Consensus 293 ~L~D 296 (416)
+..|
T Consensus 309 ~p~d 312 (648)
T PRK12267 309 DPEE 312 (648)
T ss_pred CHHH
Confidence 7643
No 89
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=74.59 E-value=3.2 Score=43.16 Aligned_cols=70 Identities=24% Similarity=0.193 Sum_probs=42.3
Q ss_pred hHHHHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014899 202 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 280 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 280 (416)
..-|+..+|--.-|+--+|.|-. +|+|- ++|+..- .+|. -+-+...+.. .. ... +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHen--eiaq~~a-~~g~-------------~~~~~~w~H~--g~-l~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGE-------------RRFARHYVHA--GM-IGL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhHh--HHHHHHH-hcCC-------------CCcceEEEEC--CE-ECC-CC-Cc
Confidence 46778888877899999999965 66654 4444321 1332 0122233332 12 233 56 79
Q ss_pred cccCCCCCCCceecC
Q 014899 281 MSKSAPSDQSRINLL 295 (416)
Q Consensus 281 MSKS~p~~~s~I~L~ 295 (416)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99997 6777764
No 90
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=74.41 E-value=2.1 Score=49.09 Aligned_cols=61 Identities=28% Similarity=0.350 Sum_probs=37.8
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
|-+|+...|.||... =++|-++..+.. .| ..| ..++.. .++-.. +| +|||||. ||
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKSl---GN 527 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH--GLVRDE-QG-RKMSKSK---GN 527 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe--eeEECC-CC-CCcccCC---CC
Confidence 457999999999874 566666654321 11 345 223222 355554 56 6999997 67
Q ss_pred ceecCC
Q 014899 291 RINLLD 296 (416)
Q Consensus 291 ~I~L~D 296 (416)
.|...|
T Consensus 528 vIdP~d 533 (874)
T PRK05729 528 VIDPLD 533 (874)
T ss_pred CCCHHH
Confidence 876643
No 91
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=73.47 E-value=7.1 Score=44.68 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=45.0
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCcceecC------CC--CHHHHHHHHHHHHHHHH
Q 014899 76 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL------PY--DTQQLSKATRETAAIYL 140 (416)
Q Consensus 76 ~~i~sGi~P--TG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~t~------~~--~~~~i~~~~~~~~a~~l 140 (416)
..+++| =| ||.+|+||..+.+.. +.++|+. ++|.+.. -|-|.+-. .+ ..+-..+++..+..++.
T Consensus 31 ~~v~~~-pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~ 109 (842)
T TIGR00396 31 YYILDM-FPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQ 109 (842)
T ss_pred EEEEcC-CCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 455555 44 499999998875522 4455554 6776544 46665521 11 33556677778888999
Q ss_pred HcCccCC
Q 014899 141 ACGIDNS 147 (416)
Q Consensus 141 A~GlDp~ 147 (416)
++|+..+
T Consensus 110 ~lG~~~D 116 (842)
T TIGR00396 110 ALGFSYD 116 (842)
T ss_pred HhCCccc
Confidence 9997654
No 92
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=73.38 E-value=7.9 Score=39.31 Aligned_cols=58 Identities=31% Similarity=0.364 Sum_probs=32.4
Q ss_pred cccceeecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014899 212 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 288 (416)
Q Consensus 212 ~~adivpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 288 (416)
+.+|+.+.|.||.. |..+..-++ .+| ...|..+... ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~-----~~~--------------~~p~~~~~~h--g~~~~~-~g-~KmSKS~--- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA-----LFG--------------KAPYKNVIVH--GFVLDE-DG-RKMSKSL--- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH-----hcC--------------CCccceEEEE--eeEECC-CC-CCCCCCC---
Confidence 34689999999975 333322222 122 1122333322 244333 56 6999997
Q ss_pred CCceecC
Q 014899 289 QSRINLL 295 (416)
Q Consensus 289 ~s~I~L~ 295 (416)
+|.|++.
T Consensus 305 gn~i~~~ 311 (338)
T cd00818 305 GNYVDPQ 311 (338)
T ss_pred CCcCCHH
Confidence 6888874
No 93
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=73.04 E-value=2.1 Score=49.57 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=12.9
Q ss_pred hhcccceeecccchHH
Q 014899 210 LLYQSDFVPVGEDQKQ 225 (416)
Q Consensus 210 l~~~adivpvG~DQ~~ 225 (416)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 94
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=72.06 E-value=5 Score=41.49 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=33.3
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
+.+|+...|.||...+-.. .++...- ..| ..| ..++.- ..+.++ +| +|||||. ||
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h--g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH--GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee--eeEECC-CC-CCccccC---CC
Confidence 3479999999997544333 3333221 112 123 222221 355555 45 6999997 67
Q ss_pred ceecC
Q 014899 291 RINLL 295 (416)
Q Consensus 291 ~I~L~ 295 (416)
.|.+.
T Consensus 351 ~v~~~ 355 (382)
T cd00817 351 VIDPL 355 (382)
T ss_pred CCCHH
Confidence 88764
No 95
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=71.87 E-value=2.9 Score=45.85 Aligned_cols=60 Identities=32% Similarity=0.400 Sum_probs=30.3
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
|-+|+..-|.||.... +.+-+....- .++. ..| +..+.. .++... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~-l~~~-----------~pf--k~v~~h---G~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVA-LFGK-----------EPF--KKVITH---GFVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHH-HSSS-----------TSB--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhH-HHHhHhhccc-cccC-----------Cch--heeeec---cccccc-ce-eecccCC---Ccc
Confidence 5689999999997643 2222222111 1221 113 223332 356555 56 7999997 677
Q ss_pred eec
Q 014899 292 INL 294 (416)
Q Consensus 292 I~L 294 (416)
|.+
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 754
No 96
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=71.45 E-value=3.5 Score=46.77 Aligned_cols=59 Identities=29% Similarity=0.348 Sum_probs=33.2
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
-+|+...|.||... -+.+-++...- .+| ..| ..++.. ..+... +| +|||||. ||.
T Consensus 486 P~d~~~~G~Di~~~-w~~~~l~~~~~-~~~---------------~~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN~ 541 (800)
T PRK13208 486 PMDLRPQGHDIIRT-WLFYTILRAYL-LTG---------------KLPWKNIMIS--GMVLDP-DG-KKMSKSK---GNV 541 (800)
T ss_pred CceEEEeecchhhh-HHHHHHHHHHH-hcC---------------CCCcceEEEe--eEEECC-CC-CCCCCCC---CCC
Confidence 47899999999852 33334433221 122 123 223322 355444 56 6999997 677
Q ss_pred eecC
Q 014899 292 INLL 295 (416)
Q Consensus 292 I~L~ 295 (416)
|.+.
T Consensus 542 i~p~ 545 (800)
T PRK13208 542 VTPE 545 (800)
T ss_pred CCHH
Confidence 7754
No 97
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=70.38 E-value=3.1 Score=41.81 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=33.5
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
..++..+|.|+..++-+.- .|--.. .| ++.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3579999999998754321 111111 11 3445554433 122 33 45 6999997 6888
Q ss_pred ecC
Q 014899 293 NLL 295 (416)
Q Consensus 293 ~L~ 295 (416)
.+.
T Consensus 290 ~~~ 292 (319)
T cd00814 290 DPD 292 (319)
T ss_pred CHH
Confidence 774
No 98
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=70.32 E-value=27 Score=37.60 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=43.5
Q ss_pred CCceEEE-ecCCCCcchhhhHHHHHH--HHHHHhh--cCcEEEE--EeCcceecC----------------CCCH-HHHH
Q 014899 74 VKKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL----------------PYDT-QQLS 129 (416)
Q Consensus 74 ~~~~i~s-Gi~PTG~lHLGnylg~i~--~~~~lQ~--~~~~~i~--IaDlhA~t~----------------~~~~-~~i~ 129 (416)
..+++|+ |.-+-+.+||||....+. -+.++++ .++|++. |.|.--+|. ..++ +-..
T Consensus 22 ~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~ 101 (490)
T PRK14536 22 GHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAA 101 (490)
T ss_pred CceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHH
Confidence 3455554 777779999999876441 1333333 3677665 466611111 1133 3344
Q ss_pred HHHHHHHHHHHHcCccCC
Q 014899 130 KATRETAAIYLACGIDNS 147 (416)
Q Consensus 130 ~~~~~~~a~~lA~GlDp~ 147 (416)
.++..+.+++.++|+.+.
T Consensus 102 ~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 102 HYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 555677888889998754
No 99
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=69.64 E-value=3.7 Score=46.99 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=36.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
|-+|+...|.||.... ++|-++.-.. ..| +.| ..++.. ..+... +| +|||||. ||
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKS~---GN 532 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH--GLVRDE-QG-RKMSKSL---GN 532 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe--eEEECC-CC-CCCCcCC---CC
Confidence 4579999999998764 4555543221 111 234 233222 355554 46 6999997 67
Q ss_pred ceecCC
Q 014899 291 RINLLD 296 (416)
Q Consensus 291 ~I~L~D 296 (416)
.|.+.|
T Consensus 533 ~i~p~~ 538 (861)
T TIGR00422 533 VIDPLD 538 (861)
T ss_pred CCCHHH
Confidence 777643
No 100
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=68.92 E-value=3.9 Score=47.49 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.4
Q ss_pred hcccceeecccchHH
Q 014899 211 LYQSDFVPVGEDQKQ 225 (416)
Q Consensus 211 ~~~adivpvG~DQ~~ 225 (416)
.+-+|+...|.||..
T Consensus 543 ~~Pad~~~~G~Di~r 557 (975)
T PRK06039 543 HFPADFIVEGIDQTR 557 (975)
T ss_pred cCCceEEEechhhHh
Confidence 355899999999975
No 101
>PLN02959 aminoacyl-tRNA ligase
Probab=67.98 E-value=4.8 Score=47.37 Aligned_cols=61 Identities=25% Similarity=0.275 Sum_probs=33.7
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
|=.|+..-|.||....- ++-+..... .+|. -+-|..++.. ..|. + +| +|||||. ||.
T Consensus 670 yP~Dl~~sG~Dii~~wl-~~~l~~~~a-l~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk---GNv 726 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL-TFAIYNHTA-IWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST---GNF 726 (1084)
T ss_pred CCCeEEEecccHHHHHH-HHHHHHHHH-hcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---CCc
Confidence 55899999999977642 333322111 1221 1233333322 2343 3 66 7999997 677
Q ss_pred eecC
Q 014899 292 INLL 295 (416)
Q Consensus 292 I~L~ 295 (416)
|.+.
T Consensus 727 I~p~ 730 (1084)
T PLN02959 727 LTLR 730 (1084)
T ss_pred CCHH
Confidence 7654
No 102
>PLN02943 aminoacyl-tRNA ligase
Probab=67.89 E-value=4.7 Score=46.80 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=42.8
Q ss_pred chhhhhhHHHHHhhh-hcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCce-ecCCCCccccc
Q 014899 196 VALLTYPVLMASDIL-LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMS 273 (416)
Q Consensus 196 ~g~l~YPvLQAADIl-~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~-l~~~~~~~l~~ 273 (416)
++.+.||-....+.- .|-+|+...|.||. .+=++|-++.-.. ..| ..|.. +... ..+..
T Consensus 518 ~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~h--g~v~~ 578 (958)
T PLN02943 518 FSTLGWPDVSAEDFKKFYPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLH--GLIRD 578 (958)
T ss_pred HHhcCCCccChHHHhccCCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEe--ccEEC
Confidence 344446543222322 35579999999998 4677776663221 012 23422 2221 24444
Q ss_pred CCCCCCccccCCCCCCCceecCC
Q 014899 274 LTDGLSKMSKSAPSDQSRINLLD 296 (416)
Q Consensus 274 L~dg~~KMSKS~p~~~s~I~L~D 296 (416)
. +| +|||||. ||.|...|
T Consensus 579 ~-~G-~KMSKS~---GN~i~p~~ 596 (958)
T PLN02943 579 S-QG-RKMSKTL---GNVIDPLD 596 (958)
T ss_pred C-CC-CcccCcC---CCCCCHHH
Confidence 4 56 7999997 67887653
No 103
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=67.19 E-value=4.9 Score=42.23 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=42.4
Q ss_pred CceE-EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcEEEEE-eCcce--ecC-----CCCH-HHHHHHHHHHHHHHH
Q 014899 75 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIYL 140 (416)
Q Consensus 75 ~~~i-~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~l 140 (416)
..++ .+|--|=+.+||||..+.+ .-+.++++. ++|+++. .|.|- ++. ..++ +-.+.++..+.+++.
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~ 115 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDME 115 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4444 4577777999999987755 224455443 6776554 34442 111 1245 344556667788888
Q ss_pred HcCcc
Q 014899 141 ACGID 145 (416)
Q Consensus 141 A~GlD 145 (416)
++|+.
T Consensus 116 ~Lni~ 120 (411)
T TIGR03447 116 ALRVL 120 (411)
T ss_pred HcCCC
Confidence 88864
No 104
>PLN02843 isoleucyl-tRNA synthetase
Probab=66.22 E-value=4.1 Score=47.32 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hhcccceeecccchHH
Q 014899 210 LLYQSDFVPVGEDQKQ 225 (416)
Q Consensus 210 l~~~adivpvG~DQ~~ 225 (416)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566899999999986
No 105
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=65.76 E-value=29 Score=38.90 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=43.3
Q ss_pred CCceEEE-ecCCCCcchhhhHHHHHH--HHHHHhh--cCcEEEEE-eCcce--ecC-----CCCH-HHHHHHHHHHHHHH
Q 014899 74 VKKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIY 139 (416)
Q Consensus 74 ~~~~i~s-Gi~PTG~lHLGnylg~i~--~~~~lQ~--~~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~ 139 (416)
...++|+ |.-+=+.+||||....+. -+.++++ +++|+++. .|.|. ++. ..++ +-...++..+..++
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~ 326 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDA 326 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4455554 666668899999877541 1333333 36776554 33331 111 1244 34455666788888
Q ss_pred HHcCccCCC
Q 014899 140 LACGIDNSK 148 (416)
Q Consensus 140 lA~GlDp~k 148 (416)
.++|+.+..
T Consensus 327 ~~LnI~~p~ 335 (699)
T PRK14535 327 DALGVLRPD 335 (699)
T ss_pred HHcCCCCCc
Confidence 899987653
No 106
>PLN02381 valyl-tRNA synthetase
Probab=65.47 E-value=5 Score=47.12 Aligned_cols=60 Identities=25% Similarity=0.305 Sum_probs=38.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCce-ecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~-l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
|-+|+..-|-||. ++=++|-++.-+-. .| ..|.- ++.. .+|-+- +| +|||||. ||
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h--G~V~D~-~G-~KMSKS~---GN 662 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH--PMIRDA-HG-RKMSKSL---GN 662 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec--ceEECC-CC-CCCCCCC---CC
Confidence 5689999999999 56677777654321 12 23422 2221 366665 56 6999997 67
Q ss_pred ceecC
Q 014899 291 RINLL 295 (416)
Q Consensus 291 ~I~L~ 295 (416)
.|...
T Consensus 663 vIdP~ 667 (1066)
T PLN02381 663 VIDPL 667 (1066)
T ss_pred CCCHH
Confidence 77654
No 107
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=65.46 E-value=5.8 Score=46.23 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=37.7
Q ss_pred hcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCC
Q 014899 211 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 289 (416)
Q Consensus 211 ~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 289 (416)
.|-+|+...|.||.. +=++|-++.-+.- .| +.|. .++.- .+|.+- +| +|||||. |
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H--G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH--AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc--ceEECC-CC-CCcccCC---C
Confidence 356899999999876 5666666654321 11 3452 23322 356554 56 6999997 6
Q ss_pred CceecC
Q 014899 290 SRINLL 295 (416)
Q Consensus 290 s~I~L~ 295 (416)
|.|...
T Consensus 592 NvIdP~ 597 (995)
T PTZ00419 592 NVIDPL 597 (995)
T ss_pred CcCChH
Confidence 777543
No 108
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=64.03 E-value=6 Score=39.86 Aligned_cols=68 Identities=26% Similarity=0.159 Sum_probs=38.1
Q ss_pred HHHHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcc
Q 014899 203 VLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKM 281 (416)
Q Consensus 203 vLQAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KM 281 (416)
..|+...|-..-||--+|.|-. ||+|=-+-.++-.+ |+. | .-.-+++. +|.- +| +||
T Consensus 196 sam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~------------~-a~~W~H~g---~l~~--~g-~KM 253 (300)
T PF01406_consen 196 SAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKP------------F-ANYWMHNG---HLNV--DG-EKM 253 (300)
T ss_dssp HHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-------------S-EEEEEEE-----EEE--TT-CE-
T ss_pred HHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---Cch------------H-HHHHHHHH---HHhh--cC-ccc
Confidence 5677888888899999999975 78887555555433 311 1 01113322 3322 45 799
Q ss_pred ccCCCCCCCceecC
Q 014899 282 SKSAPSDQSRINLL 295 (416)
Q Consensus 282 SKS~p~~~s~I~L~ 295 (416)
|||. +|.|.+.
T Consensus 254 SKSl---gN~~~i~ 264 (300)
T PF01406_consen 254 SKSL---GNFITIR 264 (300)
T ss_dssp -TTT---T---BHH
T ss_pred cccC---CCEEEHH
Confidence 9997 5777763
No 109
>PLN02660 pantoate--beta-alanine ligase
Probab=63.35 E-value=21 Score=35.79 Aligned_cols=69 Identities=20% Similarity=0.285 Sum_probs=47.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
.++|....|.-..|-+.+.|.+.+.+| | |.-++.- |.+-- .|| ==||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~------------------~--~v~I~~~--ptvRe-~dG-LA~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLD------------------F--DIEVVGS--PIVRE-ADG-LAMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcC------------------C--CceEEee--CceEC-CCC-Ceecccc------
Confidence 489999999999999999999999877 2 2223321 12222 255 3677663
Q ss_pred eecCCCHHHHHHHhhhccc
Q 014899 292 INLLDPKDVIANKIKRCKT 310 (416)
Q Consensus 292 I~L~D~~e~I~kKI~kA~T 310 (416)
.||++...+....|-++.+
T Consensus 195 ~yLs~~eR~~A~~l~~~L~ 213 (284)
T PLN02660 195 VRLSAEEREKALSISRSLA 213 (284)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5777777777777766654
No 110
>PLN02286 arginine-tRNA ligase
Probab=62.21 E-value=8.9 Score=42.00 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=41.9
Q ss_pred cceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014899 214 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 293 (416)
Q Consensus 214 adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 293 (416)
--+-.+|.||..|+.--..+++.++.... ..-..-+++.- .+|-++ +| +||||-. |+.|.
T Consensus 329 ~~IyVvg~~q~~hf~~v~~~l~~lG~~~~------------~~~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~ 388 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVFKAAKRAGWLPE------------DTYPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVR 388 (576)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCcc------------ccCCceEEEee---ccEECC-CC-CcccCCC---CCeeE
Confidence 34667999999999999999998762100 00001112222 366444 55 5999885 68999
Q ss_pred cCCCHHH
Q 014899 294 LLDPKDV 300 (416)
Q Consensus 294 L~D~~e~ 300 (416)
|.|==++
T Consensus 389 L~dllde 395 (576)
T PLN02286 389 LVDLLDE 395 (576)
T ss_pred HHHHHHH
Confidence 8764444
No 111
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=60.74 E-value=5.7 Score=42.97 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=32.4
Q ss_pred ceeecccchHHHHHH-HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014899 215 DFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 293 (416)
Q Consensus 215 divpvG~DQ~~hleL-aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 293 (416)
++...|.|+..++.+ --.+..-.+ ..++.|..++.. ..+. + +| +|||||. ||.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~----------------~~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSG----------------EPLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcC----------------CCCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 488889999764432 222221111 114567655543 2443 3 56 6999997 67776
Q ss_pred cC
Q 014899 294 LL 295 (416)
Q Consensus 294 L~ 295 (416)
..
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 54
No 112
>PLN02882 aminoacyl-tRNA ligase
Probab=60.71 E-value=7.8 Score=45.95 Aligned_cols=76 Identities=26% Similarity=0.364 Sum_probs=40.8
Q ss_pred ccchhhhhhHHHHHhhh--hcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCccc
Q 014899 194 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARV 271 (416)
Q Consensus 194 ~~~g~l~YPvLQAADIl--~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l 271 (416)
.+++.+-||- ..-+.+ .+=+|+..-|.||...- +.+-++...- .+| .+.|.-++.. ..+
T Consensus 547 ~p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~--------------~~pfk~Vivh--G~v 607 (1159)
T PLN02882 547 MPYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFD--------------KPAFKNLICN--GLV 607 (1159)
T ss_pred cHHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcC--------------CCCcceeEEc--cEE
Confidence 4556666662 112211 24599999999999853 4444443321 133 1233333332 233
Q ss_pred ccCCCCCCccccCCCCCCCcee
Q 014899 272 MSLTDGLSKMSKSAPSDQSRIN 293 (416)
Q Consensus 272 ~~L~dg~~KMSKS~p~~~s~I~ 293 (416)
..= +| +|||||. ||.|.
T Consensus 608 lde-~G-~KMSKSl---GNvId 624 (1159)
T PLN02882 608 LAE-DG-KKMSKSL---KNYPD 624 (1159)
T ss_pred ECC-CC-CCcccCC---CCCCC
Confidence 321 45 7999997 57664
No 113
>PLN02563 aminoacyl-tRNA ligase
Probab=60.70 E-value=6.6 Score=45.60 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=21.8
Q ss_pred cccceeecccch-HHHHHHHHHHHHHHh
Q 014899 212 YQSDFVPVGEDQ-KQHLELTRELAERVN 238 (416)
Q Consensus 212 ~~adivpvG~DQ-~~hleLaRdiA~r~n 238 (416)
+-+|+..+|.|| .-|+-.+|-....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 459999999999 578888888876554
No 114
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.55 E-value=7.3 Score=42.70 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=45.3
Q ss_pred cceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 214 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 214 adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
--|-.+|.||.+|+.-.+-++...+ | ..+. .++... -.++...+| .||||-. ++.|
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g--~----------------~~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~v 392 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLG--Y----------------GPDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVV 392 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhc--C----------------CCccceEEEEE-EeeeECCCC-ccccccC---CceE
Confidence 3366799999999999999988866 2 2231 222110 123333234 6899997 6899
Q ss_pred ecCCCHHHHHHHh
Q 014899 293 NLLDPKDVIANKI 305 (416)
Q Consensus 293 ~L~D~~e~I~kKI 305 (416)
.|.|=-+++.+|-
T Consensus 393 tl~dllde~~era 405 (577)
T COG0018 393 TLDDLLDEAGERA 405 (577)
T ss_pred EHHHHHHHHHHHh
Confidence 9988777777443
No 115
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=59.16 E-value=39 Score=31.36 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=38.5
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcce-ec--CCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCch
Q 014899 82 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 158 (416)
Q Consensus 82 i~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA-~t--~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~ 158 (416)
|+| +|+||.-- ++.. ++..-+++|.|+.-.. -+ ++-+.++-.+.++.. +...|+|.+++.|.-=.++.
T Consensus 8 F~P---~H~GHl~~-i~~a--~~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~~ 78 (181)
T cd02168 8 FQP---FHNGHLAV-VLIA--LEKAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDHL 78 (181)
T ss_pred cCC---CCHHHHHH-HHHH--HHHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCCC
Confidence 555 89999743 3333 2232367776755421 22 122444433333322 23468999888776544431
Q ss_pred hhhhHHHH
Q 014899 159 AHVELMWL 166 (416)
Q Consensus 159 e~~el~w~ 166 (416)
+.+..|.
T Consensus 79 -~~~~~W~ 85 (181)
T cd02168 79 -YSDNLWL 85 (181)
T ss_pred -CChHHHH
Confidence 2344555
No 116
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=58.18 E-value=7.3 Score=44.60 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.6
Q ss_pred cccceeecccch-HHHHHHHHHHHHH
Q 014899 212 YQSDFVPVGEDQ-KQHLELTRELAER 236 (416)
Q Consensus 212 ~~adivpvG~DQ-~~hleLaRdiA~r 236 (416)
+-+|+...|.|| .-|+-.+|-+...
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6777777876533
No 117
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=57.78 E-value=14 Score=43.15 Aligned_cols=44 Identities=30% Similarity=0.252 Sum_probs=27.7
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~ 119 (416)
+.|.+|. -|||.+|+||.++...+ +.++|.. ++|.+ .-.|-|.+
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 4555554 35799999998875522 4455554 56644 44677766
No 118
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=57.72 E-value=4 Score=45.36 Aligned_cols=71 Identities=30% Similarity=0.256 Sum_probs=42.7
Q ss_pred hHHHHHhhhhcccceeecccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014899 202 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 280 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~DQ-~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 280 (416)
...|+.|||-...||--+|.|- -||+|= |+|+.-- .+|.. .+ .-..++.. .| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHeN--EiAQseA-~~~~~-----------~~-v~y~~H~G---~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHDN--ELAQSEA-YFDKH-----------QW-VNYFLHSG---HL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcchh--HHHHHHH-hhCCC-----------CC-CcEEEEEE---EE-Ee-cc-ch
Confidence 4689999999999999999998 467543 3443311 13321 11 01122222 22 23 55 69
Q ss_pred cccCCCCCCCceecCC
Q 014899 281 MSKSAPSDQSRINLLD 296 (416)
Q Consensus 281 MSKS~p~~~s~I~L~D 296 (416)
||||. +|.|.+.|
T Consensus 316 MSKSL---GNfItp~d 328 (651)
T PTZ00399 316 MSKSL---KNFITIRQ 328 (651)
T ss_pred hhhcC---CCcccHHH
Confidence 99997 67887753
No 119
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.54 E-value=8.3 Score=43.88 Aligned_cols=64 Identities=22% Similarity=0.134 Sum_probs=36.2
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCce-ecCCCCcccccCCCCCCccccCCCCCC
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQ 289 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~--yg~~~~~~~g~~~~~~f~~P~~-l~~~~~~~l~~L~dg~~KMSKS~p~~~ 289 (416)
=.|+-.+|.|+...+-|= -||+++ |....|+ ..+|.. |++. .+|.+- +| +|||||. +
T Consensus 526 PVD~yigG~ehavlHLly----~rF~Hkal~d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK---g 585 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLY----FRFFHKALFDEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK---G 585 (814)
T ss_pred ChheeecchhHHHHHHHH----HHHHHHHhcccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---C
Confidence 479999999998866542 234543 2211111 122221 4444 366554 45 6999997 5
Q ss_pred CceecCC
Q 014899 290 SRINLLD 296 (416)
Q Consensus 290 s~I~L~D 296 (416)
|.|.+.|
T Consensus 586 N~v~p~~ 592 (814)
T COG0495 586 NVVDPEE 592 (814)
T ss_pred CCCCHHH
Confidence 7776543
No 120
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=57.12 E-value=15 Score=41.78 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=40.4
Q ss_pred ceEEE-ecCCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCcceecC--------CCCH-------------HHH
Q 014899 76 KRIVS-GVQPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL--------PYDT-------------QQL 128 (416)
Q Consensus 76 ~~i~s-Gi~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~t~--------~~~~-------------~~i 128 (416)
..+.+ .--|+|.+||||.++.+.+ +.++++. ++|.+.. -|-|.+-. ..++ +-.
T Consensus 40 f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~~ 119 (800)
T PRK13208 40 YSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRELT 119 (800)
T ss_pred EEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHHH
Confidence 45555 2346799999999875522 4455553 5665443 56665421 1111 122
Q ss_pred HHHHHHHHHHHHHcCccCC
Q 014899 129 SKATRETAAIYLACGIDNS 147 (416)
Q Consensus 129 ~~~~~~~~a~~lA~GlDp~ 147 (416)
.++...+..++.++|+..+
T Consensus 120 ~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 120 DEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHhCeeec
Confidence 3344566677788887544
No 121
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.79 E-value=76 Score=34.84 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=19.3
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014899 257 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 296 (416)
Q Consensus 257 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 296 (416)
++.|..++... .+ -+ +| +|||||. ++.|+..+
T Consensus 315 ~~lP~~i~ahg--~l-~~-~G-~KmSKSr---G~~V~~~~ 346 (558)
T COG0143 315 LPLPTRIFAHG--FL-TL-EG-QKMSKSR---GNVVDPDE 346 (558)
T ss_pred CCCCCEEEeee--eE-EE-CC-ccccccC---CcEEeHHH
Confidence 45676665431 11 12 45 5999997 67887643
No 122
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=56.57 E-value=7.3 Score=41.86 Aligned_cols=68 Identities=25% Similarity=0.126 Sum_probs=39.8
Q ss_pred hHHHHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014899 202 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 280 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 280 (416)
..-|+...|--.-||.-+|.|-. ||+|- ++|+..-. +|. +-+...+.. .++ .. +| +|
T Consensus 222 CsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~--------------~~~~~w~h~--g~l-~~-~g-~K 279 (490)
T PRK14536 222 CSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGK--------------PWVRYWLHH--EFL-LM-NK-GK 279 (490)
T ss_pred HHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCC--------------CcceEEEEc--CEE-ee-cC-cc
Confidence 34566666666679999999964 67765 45544221 231 223333322 122 23 45 69
Q ss_pred cccCCCCCCCceec
Q 014899 281 MSKSAPSDQSRINL 294 (416)
Q Consensus 281 MSKS~p~~~s~I~L 294 (416)
||||. +|.|.+
T Consensus 280 MSKSl---GN~itl 290 (490)
T PRK14536 280 MSKSA---GQFLTL 290 (490)
T ss_pred ccccC---CCcccH
Confidence 99997 678877
No 123
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=55.38 E-value=8.6 Score=41.32 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=32.6
Q ss_pred eeecccchHHHHHHHH-HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceec
Q 014899 216 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 294 (416)
Q Consensus 216 ivpvG~DQ~~hleLaR-diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 294 (416)
+.+.|.|...++-+-- -+..- .| ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~----~~--------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMG----LG--------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHh----CC--------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999998653321 11111 12 4456655543 2443 2 45 7999997 688876
Q ss_pred CC
Q 014899 295 LD 296 (416)
Q Consensus 295 ~D 296 (416)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 54
No 124
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.48 E-value=7.6 Score=41.32 Aligned_cols=71 Identities=28% Similarity=0.171 Sum_probs=44.5
Q ss_pred hHHHHHhhhhcccceeecccc-hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014899 202 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 280 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~D-Q~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 280 (416)
...|+.++|--.-||--+|.| +-||+|= |||+.-- .+|.+ .| .-.-+++. +|+= +| +|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~-----------~~-a~yWmH~G---~l~i--~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVK-----------PF-AKYWMHNG---FLNI--DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCC-----------cc-eeEeEEcc---eeee--cC-cC
Confidence 368899999999999999999 5688875 5554422 13311 01 01123332 3322 55 79
Q ss_pred cccCCCCCCCceecCC
Q 014899 281 MSKSAPSDQSRINLLD 296 (416)
Q Consensus 281 MSKS~p~~~s~I~L~D 296 (416)
||||. +|.|.+.|
T Consensus 269 MSKSL---GNfiti~d 281 (464)
T COG0215 269 MSKSL---GNFITVRD 281 (464)
T ss_pred ccccc---CCeeEHHH
Confidence 99997 67887754
No 125
>PLN02946 cysteine-tRNA ligase
Probab=51.12 E-value=7.2 Score=42.56 Aligned_cols=72 Identities=14% Similarity=-0.004 Sum_probs=41.5
Q ss_pred CCceEEE-ecCCCCcchhhhHHHHHH--HHHHHhh--cCcEEEEE-eCcce--ecC-----CCCH-HHHHHHHHHHHHHH
Q 014899 74 VKKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIY 139 (416)
Q Consensus 74 ~~~~i~s-Gi~PTG~lHLGnylg~i~--~~~~lQ~--~~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~ 139 (416)
..+++|+ |.-+-|.+||||..+.+. -+.++++ +++|++.. .|.|- ++. ..++ +-.+.++..+.+++
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455554 655558999999876541 1333333 36775443 33332 111 1255 44456667788888
Q ss_pred HHcCcc
Q 014899 140 LACGID 145 (416)
Q Consensus 140 lA~GlD 145 (416)
.++|+.
T Consensus 159 ~~LnI~ 164 (557)
T PLN02946 159 AYLHCL 164 (557)
T ss_pred HHCCCC
Confidence 999985
No 126
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.65 E-value=78 Score=33.68 Aligned_cols=65 Identities=14% Similarity=0.241 Sum_probs=45.6
Q ss_pred cCCCCcchhhhHHHHH--HHHHHHhhc-CcEEEEE--eCcceecC------CC--CHHHHHHHHHHHHHHHHHcCccC
Q 014899 82 VQPTGSIHLGNYLGAI--KNWIALQNS-YETLFFI--VDLHAITL------PY--DTQQLSKATRETAAIYLACGIDN 146 (416)
Q Consensus 82 i~PTG~lHLGnylg~i--~~~~~lQ~~-~~~~i~I--aDlhA~t~------~~--~~~~i~~~~~~~~a~~lA~GlDp 146 (416)
|-|-..+||||....+ ....++|.. ++.+|+. .|-|.+-. ++ .++.+......+...|.+.|+.-
T Consensus 48 fYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~y 125 (578)
T KOG0436|consen 48 FYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAY 125 (578)
T ss_pred eecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcch
Confidence 3466789999976665 335667886 6666666 78887732 22 45666777788888899999864
No 127
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=50.05 E-value=12 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.5
Q ss_pred cccceeecccch-HHHHHHHHHHHHH
Q 014899 212 YQSDFVPVGEDQ-KQHLELTRELAER 236 (416)
Q Consensus 212 ~~adivpvG~DQ-~~hleLaRdiA~r 236 (416)
|-+|+.+.|.|| .-|+-.+|-....
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~ 547 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKV 547 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6788888855533
No 128
>PLN02843 isoleucyl-tRNA synthetase
Probab=49.64 E-value=27 Score=40.74 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=40.7
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCcceecC--------------CCCHHHHHHHHHHH
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL--------------PYDTQQLSKATRET 135 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t~--------------~~~~~~i~~~~~~~ 135 (416)
+.+..|. -++|.+|+||.+..+.+ +++++.. ++|. +.--|-|.+-. ..+++++++.+++.
T Consensus 34 f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~ 113 (974)
T PLN02843 34 FTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKF 113 (974)
T ss_pred EEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHHH
Confidence 4444443 25799999998875532 3444443 5654 44456664421 11455555555443
Q ss_pred --------HHHHHHcCc--cCCC
Q 014899 136 --------AAIYLACGI--DNSK 148 (416)
Q Consensus 136 --------~a~~lA~Gl--Dp~k 148 (416)
...+..+|+ |-++
T Consensus 114 ~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 114 AKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHhCCceecCC
Confidence 345677888 5544
No 129
>PLN02946 cysteine-tRNA ligase
Probab=49.55 E-value=1.6e+02 Score=32.27 Aligned_cols=68 Identities=22% Similarity=0.073 Sum_probs=41.3
Q ss_pred hHHHHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014899 202 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 280 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 280 (416)
...|+...|-..-||--+|.|-. ||+|-- +|+..- .+|. .+. ..-++. .+|. + +| +|
T Consensus 266 CSaMs~~~lG~~~DIH~GG~DL~FPHHENE--iAQsea-~~g~------------~~a-~yW~H~---G~v~-~-~G-~K 323 (557)
T PLN02946 266 CSAMSAAYLGHSFDIHGGGMDLVFPHHENE--IAQSCA-ACCD------------SNI-SYWIHN---GFVT-V-DS-EK 323 (557)
T ss_pred HHHHHHHHcCCCeeEeccccccCCCcccch--HHHHHH-HhCC------------CCC-ceeeEe---eEEE-e-CC-CC
Confidence 46788888888899999999964 677653 443311 1231 111 111332 2444 4 56 69
Q ss_pred cccCCCCCCCceec
Q 014899 281 MSKSAPSDQSRINL 294 (416)
Q Consensus 281 MSKS~p~~~s~I~L 294 (416)
||||. +|.|.+
T Consensus 324 MSKSl---GN~itl 334 (557)
T PLN02946 324 MSKSL---GNFFTI 334 (557)
T ss_pred cCCcC---CCcCCH
Confidence 99997 577766
No 130
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=49.08 E-value=1.9e+02 Score=25.63 Aligned_cols=87 Identities=13% Similarity=0.220 Sum_probs=58.1
Q ss_pred CccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Q 014899 324 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADAT 403 (416)
Q Consensus 324 p~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~t 403 (416)
.+.+|+--.++++++.++. ...+|.. ..++++.+.++|...+....+.|......-..+..-+.+..++.+.+ ...
T Consensus 19 ~~~~pv~~al~~ld~ss~g-~~~~~~~--f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l-K~~ 94 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVG-RAHRYQE--FEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL-KES 94 (142)
T ss_pred CCCcHHHHHHHhcCCCCcc-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3456666666666655432 2223322 44677778888888888777778777776667777777777777766 677
Q ss_pred HHHHHHHcCCC
Q 014899 404 LNNVYQAMGFL 414 (416)
Q Consensus 404 l~~Vr~~~Gl~ 414 (416)
|...++.+|..
T Consensus 95 L~~ak~~L~~~ 105 (142)
T PF04048_consen 95 LQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHhcC
Confidence 88888777654
No 131
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=49.04 E-value=1e+02 Score=32.49 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=40.3
Q ss_pred hHHHHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014899 202 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 280 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 280 (416)
...|+..+|--.-|+.-+|.|-. +|+|- ++|+..- .+|+. +-+...+.. -.... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~-------------~~~~~w~H~---g~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVR-------------RMARHYVHA---GMIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCC-------------CcceEEEEC---CEECc-CC-CC
Confidence 45677777777789999999965 56654 4444321 13320 112233322 22233 56 79
Q ss_pred cccCCCCCCCceec
Q 014899 281 MSKSAPSDQSRINL 294 (416)
Q Consensus 281 MSKS~p~~~s~I~L 294 (416)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99997 677776
No 132
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=48.75 E-value=8.9 Score=39.28 Aligned_cols=73 Identities=27% Similarity=0.223 Sum_probs=43.6
Q ss_pred cceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014899 214 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 293 (416)
Q Consensus 214 adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 293 (416)
.-+-.+|.||..|+.-...+++.++..-. ... ..+-.. .++. +.||+.|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~~~-~~H~~~-g~vl-~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPE---------------AVK-LQHVSF-GVVL-LKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------HCT-EEEEEE--EEE-ETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCC---------------CCE-EEEEEE-EEEE-cCCCCccccCCC---CCceE
Confidence 44778999999999999999998873100 011 111111 1222 235623799996 68999
Q ss_pred cCCCHHHHHHHhhh
Q 014899 294 LLDPKDVIANKIKR 307 (416)
Q Consensus 294 L~D~~e~I~kKI~k 307 (416)
|.|==++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 86655555555544
No 133
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=48.57 E-value=10 Score=42.30 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=20.3
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014899 257 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 295 (416)
Q Consensus 257 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 295 (416)
++.|..++.. ..+.. +| +|||||. +|.|+..
T Consensus 311 ~~lP~~v~~h--g~v~~--~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLTV--EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEEe--cC-CcccccC---CcccCHH
Confidence 5677666654 24433 56 6999997 6777664
No 134
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=48.34 E-value=18 Score=39.48 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=40.7
Q ss_pred cceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 214 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 214 adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
--+-.+|.||..|+.--..+++.++. ..+. ..+-.. .+|- + +| +||||-. |+.|
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~------------------~~~~~l~h~~~-g~V~-~-~g-~kmStR~---G~~v 380 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGY------------------TWVDGMEHVPF-GLIL-K-DG-KKMSTRK---GRVV 380 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCC------------------CcccCeEEEee-eeEe-c-CC-CCCcCCC---CCee
Confidence 34778999999999999999998763 1111 111111 2332 3 45 5999997 6888
Q ss_pred ecCCCHHH
Q 014899 293 NLLDPKDV 300 (416)
Q Consensus 293 ~L~D~~e~ 300 (416)
.|.|==++
T Consensus 381 ~l~dLlde 388 (562)
T PRK12451 381 LLEEVLEE 388 (562)
T ss_pred EHHHHHHH
Confidence 88764443
No 135
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.93 E-value=1.2e+02 Score=34.60 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHH----------------hcC--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 014899 358 PLLTDALIEHLHPIQVRYEEI----------------MSD--SAYLDKVLADG--AAKAADIADATLNNVYQA 410 (416)
Q Consensus 358 ~~Lae~I~~~L~pirer~~~~----------------~~d--~~~l~~iL~~G--a~kAr~iA~~tl~~Vr~~ 410 (416)
+.+--.+.++...|+|.|+.+ +++ -+++++.|-.| ..-+|..++.||-.+...
T Consensus 703 q~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~ 775 (937)
T KOG0433|consen 703 QYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHN 775 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 344445666666666666654 111 14566777766 566788888888766554
No 136
>PLN02563 aminoacyl-tRNA ligase
Probab=46.28 E-value=43 Score=39.13 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=44.6
Q ss_pred ceEEEec-CCCCc-chhhhHHHHHHH--HHHHhhc--CcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014899 76 KRIVSGV-QPTGS-IHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 140 (416)
Q Consensus 76 ~~i~sGi-~PTG~-lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 140 (416)
..|++|+ -|+|. +|+||..+.+.. +.++++. ++|++.. -|-|.+-. ...+ +...+++..+.+.+.
T Consensus 112 ~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~ 191 (963)
T PLN02563 112 FYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLK 191 (963)
T ss_pred EEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHH
Confidence 4666676 34697 999998775422 4455554 6765444 46666531 1122 345667778888889
Q ss_pred HcCccCC
Q 014899 141 ACGIDNS 147 (416)
Q Consensus 141 A~GlDp~ 147 (416)
.+|+.-+
T Consensus 192 ~lG~s~D 198 (963)
T PLN02563 192 SLGFSYD 198 (963)
T ss_pred HhCcEee
Confidence 9996444
No 137
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=45.58 E-value=13 Score=42.60 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=27.4
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~ 119 (416)
++.|++|. -+||.+|+||.+....+ +.+++.. ++|.+.. -|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 35565554 35799999998875522 4455553 5664443 566655
No 138
>PLN02224 methionine-tRNA ligase
Probab=45.54 E-value=15 Score=40.57 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=36.5
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
...++..+|.|-.+++-+-= -|--+. -| ++.|..++.. ..+ .+ +| +|||||. +|.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~--~g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMS--AG--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHH--CC--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688999999988643322 121111 11 5677766654 233 33 66 7999997 688
Q ss_pred eecCC
Q 014899 292 INLLD 296 (416)
Q Consensus 292 I~L~D 296 (416)
|++.|
T Consensus 375 i~p~e 379 (616)
T PLN02224 375 LEPFE 379 (616)
T ss_pred CCHHH
Confidence 87654
No 139
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=45.37 E-value=38 Score=35.97 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=45.8
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE----
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 150 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~---- 150 (416)
+|+=-.=-|||.+|||-.-.|+-|++---+. ++.+.=|-| +-.+ ..+.....++..++.-+||++|..-
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiED-TDq~-----R~v~gs~e~i~~~L~w~nl~~DEgP~~gG 107 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIED-TDQK-----RLIRGSEEAIYEDLKWANLDWDEGPGVGG 107 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEecc-cccc-----ccccchHHHHHHHHHhcCCCcccCCCcCC
Confidence 4554455578999999999999887532232 344433433 2121 1222233455567788999998754
Q ss_pred ---EEEcCCc
Q 014899 151 ---VFVQSHV 157 (416)
Q Consensus 151 ---if~QS~v 157 (416)
=|.||+-
T Consensus 108 ~~GPY~QS~R 117 (524)
T KOG1149|consen 108 PFGPYEQSER 117 (524)
T ss_pred CCCchhhHHH
Confidence 3778873
No 140
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=43.89 E-value=1.2e+02 Score=24.79 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014899 353 WGTFKPLLTDALIEHLHPIQVRYEEIMSD-SAYLDKVLADGAAKAADIADATLNNVYQ 409 (416)
Q Consensus 353 ~~dlK~~Lae~I~~~L~pirer~~~~~~d-~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~ 409 (416)
-.++...+++...+..+.+|++..+..++ .+.+.+......+++++.+..|=+-|++
T Consensus 14 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 14 LEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777777777777766543 2344555555555666666666666654
No 141
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.59 E-value=16 Score=41.80 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=22.5
Q ss_pred CCCcchhhhHHHHH--HHHHHHhhc--CcEEEEEeCcce
Q 014899 84 PTGSIHLGNYLGAI--KNWIALQNS--YETLFFIVDLHA 118 (416)
Q Consensus 84 PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i~IaDlhA 118 (416)
+||.+|+||.+..- .-.+++++. ++++++-+=.||
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 38999999976522 224455553 677776665665
No 142
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=41.61 E-value=66 Score=26.02 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHH
Q 014899 322 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 366 (416)
Q Consensus 322 ~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~ 366 (416)
.|.-+..+++++. .|.+.+|+.++|-.+...++..++.-+...
T Consensus 29 tRI~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 29 TRIPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred ceecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 3445556666655 789999999999999999999888776655
No 143
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=41.34 E-value=1.3e+02 Score=27.23 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=32.3
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcCc-EEEEE-eCcceecC--CCCHHHHHHHHHHHHH-HHHHcCccCCCeEEEEcCC
Q 014899 82 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFI-VDLHAITL--PYDTQQLSKATRETAA-IYLACGIDNSKASVFVQSH 156 (416)
Q Consensus 82 i~PTG~lHLGnylg~i~~~~~lQ~~~~-~~i~I-aDlhA~t~--~~~~~~i~~~~~~~~a-~~lA~GlDp~k~~if~QS~ 156 (416)
|+| +|+||.-- ++...+ .+| ++|++ .+...... +.+.++- .+++. .+...|+|-+++.++-..+
T Consensus 8 FdP---~H~GHl~~-i~~a~~---~~d~l~v~v~s~~~~~~~~~~~~~~~R----~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILE---EVDELIIGIGSAQESHTLENPFTAGER----VLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred cCC---CCHHHHHH-HHHHHH---HCCEEEEEecCCCCCCCCCCCCCHHHH----HHHHHHHHHhcCCCcCeEEEEecCC
Confidence 566 99999743 344322 244 55555 34443322 2233322 23333 2223467777888766554
Q ss_pred c
Q 014899 157 V 157 (416)
Q Consensus 157 v 157 (416)
.
T Consensus 77 ~ 77 (163)
T cd02166 77 I 77 (163)
T ss_pred C
Confidence 4
No 144
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=40.97 E-value=1.4e+02 Score=32.26 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=41.8
Q ss_pred CCceEEE-ecCCCCcchhhhHHHHHH--HHHHHhh--cCcEEEE--EeCc-----------ceecC-----CCCH-HHHH
Q 014899 74 VKKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDL-----------HAITL-----PYDT-QQLS 129 (416)
Q Consensus 74 ~~~~i~s-Gi~PTG~lHLGnylg~i~--~~~~lQ~--~~~~~i~--IaDl-----------hA~t~-----~~~~-~~i~ 129 (416)
..+++|+ |.-+=..+||||..+.+. -+.++++ +++|++. |.|+ -.++. ..++ +-..
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 3455554 555557799999877541 1233333 3677653 4555 11221 1144 3445
Q ss_pred HHHHHHHHHHHHcCccCC
Q 014899 130 KATRETAAIYLACGIDNS 147 (416)
Q Consensus 130 ~~~~~~~a~~lA~GlDp~ 147 (416)
.++..+.+++.++|+.+.
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 556677788889998754
No 145
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=39.76 E-value=18 Score=41.65 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=26.2
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~ 119 (416)
+.+.+|. -+||.+|+||.+....+ +++++.. ++|. +.-.|-|.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 4444433 25799999998875422 3444443 5654 444677766
No 146
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=39.49 E-value=19 Score=42.43 Aligned_cols=46 Identities=33% Similarity=0.384 Sum_probs=28.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEE-EeCcceec
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAIT 120 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~-IaDlhA~t 120 (416)
++.|+.|. -+||.+|+||.++...+ +++++.. ++|.+. -.|-|.+-
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp 100 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIA 100 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchH
Confidence 35555554 25799999999875422 4555554 566544 45667553
No 147
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=38.91 E-value=25 Score=41.95 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=21.2
Q ss_pred ccchhhhhhHHHHHhhh--hcccceeecccchHHHH
Q 014899 194 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 227 (416)
Q Consensus 194 ~~~g~l~YPvLQAADIl--~~~adivpvG~DQ~~hl 227 (416)
.+.+.+-||--...+-+ .|=+|+.+=|.||...-
T Consensus 652 ~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred ChHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 34566667742112222 35699999999998643
No 148
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=38.64 E-value=35 Score=37.55 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=24.4
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCcceec
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAIT 120 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t 120 (416)
+.+..|- -+||.+|+||.+....+ +++++.. ++|. .+--|-|.+-
T Consensus 25 f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 25 FFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp EEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred EEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 4555553 35799999998875532 3445553 5654 4446777763
No 149
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=38.33 E-value=1.3e+02 Score=30.01 Aligned_cols=69 Identities=25% Similarity=0.324 Sum_probs=46.4
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
.++|....|.-..|-+.+.|.+.+.+| | |.-++.- |.+-. .|| ==||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~------------------~--~v~I~~~--ptvRe-~dG-LA~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF------------------L--DIEIVPV--PIVRE-EDG-LALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC------------------C--CceEEEe--CceEC-CCC-Cchhhcc------
Confidence 389999999999999999999999877 2 3233321 12222 255 3677663
Q ss_pred eecCCCHHHHHHHhhhccc
Q 014899 292 INLLDPKDVIANKIKRCKT 310 (416)
Q Consensus 292 I~L~D~~e~I~kKI~kA~T 310 (416)
.||+....+..-.|-++.+
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5777777677666666554
No 150
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=37.91 E-value=33 Score=37.46 Aligned_cols=41 Identities=22% Similarity=0.469 Sum_probs=28.1
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhhc--CcE--EEEEeCcc
Q 014899 77 RIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 117 (416)
Q Consensus 77 ~i~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlh 117 (416)
.-|++--|+|.+|+||.-+++ .-+.++.+. ++| ...|.||=
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchH
Confidence 347889999999999987765 224444443 454 47778864
No 151
>PHA01929 putative scaffolding protein
Probab=37.50 E-value=2.3e+02 Score=28.18 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhh
Q 014899 321 LERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGT 355 (416)
Q Consensus 321 ~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~d 355 (416)
+++|.+.+-+.|+..|++.+--++++.|+ .+.++|
T Consensus 116 ~gDp~laasv~~L~~~sg~~dlD~~RAfGKA~E~~D 151 (306)
T PHA01929 116 EGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAENRD 151 (306)
T ss_pred cCCcccchHHHHHHHHhcCcchHHHHHHHHHhhccC
Confidence 47788889999999998776677778776 233444
No 152
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.06 E-value=37 Score=37.38 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=27.9
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcE--EEEEeCccee
Q 014899 79 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHAI 119 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlhA~ 119 (416)
||.=-|||+||+||.-+++ .-..++-+. |+| -..|.||=..
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q 169 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQ 169 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHH
Confidence 7889999999999987655 223333332 565 5778888543
No 153
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=35.95 E-value=42 Score=34.31 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=22.3
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcE--EEEEeCc
Q 014899 79 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDL 116 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDl 116 (416)
|+.--|||++|+||.-.++ .-..++-+. ++| ...|.||
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~ 69 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDW 69 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTT
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCC
Confidence 7888999999999986655 223333333 454 5677787
No 154
>PLN02381 valyl-tRNA synthetase
Probab=35.53 E-value=25 Score=41.45 Aligned_cols=44 Identities=32% Similarity=0.394 Sum_probs=27.1
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~ 119 (416)
+.|.+|. -+||.+|+||.+....+ +.+++.. ++|.+.. -|-|.+
T Consensus 130 f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 130 FVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred EEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 5555554 35799999998775422 3445553 5665444 566655
No 155
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=35.53 E-value=55 Score=24.32 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=25.5
Q ss_pred CCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHH
Q 014899 322 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 361 (416)
Q Consensus 322 ~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~La 361 (416)
.|..+..++..+ -.+.+.+|+.++|-.+...+++.+|+
T Consensus 17 TRI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 17 TRIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp SS-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455555565555 37899999999999999999998875
No 156
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=33.91 E-value=22 Score=38.18 Aligned_cols=65 Identities=23% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014899 205 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 283 (416)
Q Consensus 205 QAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSK 283 (416)
|+...|--.-||.-+|.|-. ||+|- ++|...-. .| .+.+...+.. .++ .+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHen--e~Aqs~a~-~g--------------~~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHIN--EIAIAECY-LN--------------KKWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchh--HHHHHhhh-cC--------------CCcceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444579999999975 57765 34443221 23 1223333322 122 23 45 69999
Q ss_pred CCCCCCCceec
Q 014899 284 SAPSDQSRINL 294 (416)
Q Consensus 284 S~p~~~s~I~L 294 (416)
|. +|.|.+
T Consensus 283 Sl---GN~i~l 290 (481)
T PRK14534 283 SN---NNFITI 290 (481)
T ss_pred cC---CCcccH
Confidence 97 678877
No 157
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=33.53 E-value=28 Score=39.97 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=27.8
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~ 119 (416)
++.++.|. -|||.+|+||.+.-+.+ +.++|.. ++|.+ +--|-|.+
T Consensus 37 ~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 37 EFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 46777776 23599999998875422 4456654 56543 33466655
No 158
>PLN02610 probable methionyl-tRNA synthetase
Probab=33.48 E-value=17 Score=41.46 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=32.5
Q ss_pred eeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014899 216 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 295 (416)
Q Consensus 216 ivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 295 (416)
+.++|.|-..++-+-==.. -+. .| ..++.|..++.. ..+ .+ +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~wPa~-L~a--~g------------~~~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPST-LLG--TG------------ENWTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHHHHHH-HHh--CC------------CCcCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 6888998887775421111 000 11 124567766653 132 22 66 6999997 6888764
No 159
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=32.70 E-value=1.8e+02 Score=25.26 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=45.2
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCC
Q 014899 80 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 156 (416)
Q Consensus 80 sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~ 156 (416)
.-+.=||++..-|.+-+ |.+..|-++++++-..==. .......+++.......+...|++|+++.+++=|-
T Consensus 32 IrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 34455688887775432 4566787777665421100 11235566666777777888999999999987664
No 160
>PLN02943 aminoacyl-tRNA ligase
Probab=31.53 E-value=34 Score=39.90 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=27.4
Q ss_pred ceEEEe-cCCCCcchhhhHHHHHH-H-HHHHhh--cCcEEEE-EeCcceec
Q 014899 76 KRIVSG-VQPTGSIHLGNYLGAIK-N-WIALQN--SYETLFF-IVDLHAIT 120 (416)
Q Consensus 76 ~~i~sG-i~PTG~lHLGnylg~i~-~-~~~lQ~--~~~~~i~-IaDlhA~t 120 (416)
+.+..| =-+||.+|+||.+.... . +++++. +++|.+. -.|-|.+-
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~ 140 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIA 140 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccch
Confidence 555555 45689999999876442 2 334444 3666544 46777663
No 161
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=30.79 E-value=31 Score=39.98 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=41.1
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCcceecC-----C--------CCHHHHHHHHH---
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL-----P--------YDTQQLSKATR--- 133 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t~-----~--------~~~~~i~~~~~--- 133 (416)
+.+..|. -++|.+|+||.+..+.+ ++++|.. ++|. ++--|-|.+-. . .+++++++.++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 4444443 24799999998875532 4556664 5654 44456666532 0 13454444443
Q ss_pred -----HHHHHHHHcCc--cCCC
Q 014899 134 -----ETAAIYLACGI--DNSK 148 (416)
Q Consensus 134 -----~~~a~~lA~Gl--Dp~k 148 (416)
.+..++..+|+ |-++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 34456677888 5444
No 162
>PRK10404 hypothetical protein; Provisional
Probab=29.73 E-value=2.5e+02 Score=23.71 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014899 354 GTFKPLLTDALIEHLHPIQVRYEEIMSDSA-YLDKVLADGAAKAADIADATLNNVYQ 409 (416)
Q Consensus 354 ~dlK~~Lae~I~~~L~pirer~~~~~~d~~-~l~~iL~~Ga~kAr~iA~~tl~~Vr~ 409 (416)
.++.+..++.-.+..+.+|++.+..+++-. .+.+.-....+++++.|+.|=+-|++
T Consensus 22 e~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 22 EEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555556666667777666655432 45555555666788888888777765
No 163
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=28.32 E-value=32 Score=39.99 Aligned_cols=36 Identities=14% Similarity=0.090 Sum_probs=21.7
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEE
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF 111 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i 111 (416)
+.+..|. -|||.+|+||.++.... +.++|+. ++|.+
T Consensus 27 f~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 27 FFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred eEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 4444443 24699999998875422 4556664 56544
No 164
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=27.88 E-value=17 Score=37.87 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=28.9
Q ss_pred eeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceec
Q 014899 216 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 294 (416)
Q Consensus 216 ivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 294 (416)
+..+|.|-..++-+-=-.. .+. -| ++.|..++.. ..+. + +| +|||||. ++.|+.
T Consensus 285 v~~iGkDi~~fH~i~~pa~-l~a--~~--------------~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAM-LLA--AG--------------LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHH-HHH--CT--------------B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred EEEEccchhHHHHHHhHHH-Hhc--cc--------------CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 6778888777665431111 111 11 6678776654 2333 3 66 6999997 578865
No 165
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=27.15 E-value=58 Score=35.58 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=26.8
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcE--EEEEeCcce
Q 014899 79 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHA 118 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlhA 118 (416)
|+.=-|||.+|+||.-+++ .-..++-+. ++| ...|.||=.
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 7888999999999986654 223334332 555 467777743
No 166
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=26.88 E-value=5.1e+02 Score=29.37 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=24.5
Q ss_pred hHHHHHhhhhcccceeecccch-HHHHHHHHHHHHH
Q 014899 202 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAER 236 (416)
Q Consensus 202 PvLQAADIl~~~adivpvG~DQ-~~hleLaRdiA~r 236 (416)
...|+...|--.-||.-+|.|- -||+|= |+|+.
T Consensus 435 CSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 435 CSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 4567777777778999999996 478765 55554
No 167
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=26.70 E-value=1.2e+02 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014899 369 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQA 410 (416)
Q Consensus 369 ~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~~ 410 (416)
...|+-|..+...-+..+..+.+|.-.+.+.|.+++..+|..
T Consensus 53 kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~l~d~Rn~ 94 (100)
T COG3783 53 KDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKTLKDTRNT 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 457778888876667778888899999999999999998864
No 168
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.54 E-value=23 Score=40.59 Aligned_cols=21 Identities=43% Similarity=0.398 Sum_probs=13.9
Q ss_pred ccccCCCCCCccccCCCCCCCceecC
Q 014899 270 RVMSLTDGLSKMSKSAPSDQSRINLL 295 (416)
Q Consensus 270 ~l~~L~dg~~KMSKS~p~~~s~I~L~ 295 (416)
++-+= +| .|||||. ||.|...
T Consensus 517 LVrDe-~G-~KMSKS~---GNvIDP~ 537 (877)
T COG0525 517 LVRDE-QG-RKMSKSK---GNVIDPL 537 (877)
T ss_pred eEEcC-CC-CCCcccC---CCcCCHH
Confidence 44443 46 7999997 6777443
No 169
>PLN02286 arginine-tRNA ligase
Probab=26.38 E-value=51 Score=36.19 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=26.1
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcE--EEEEeCcc
Q 014899 79 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 117 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~--~i~IaDlh 117 (416)
|+.--|||.+|+||.-+++ .-..++-+. ++| ...|.||=
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchH
Confidence 8899999999999986544 223333332 555 56777773
No 170
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.29 E-value=1.1e+02 Score=33.80 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=54.0
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHHHHHHhhcC-cEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 76 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 76 ~~i~sGi~P--TG~lHLGnylg~i~~~~~lQ~~~-~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
=.|+|-|-| -|.+||||.=...-++ -+-+++ -+.++-=|. |+|. +.++--..+.++++ =+|++|=|++
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNF-gyAk~~~G~cyLRfDD---TNPEkEee~yf~sI~e~V~---WLG~~P~kvT- 318 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNF-GYAKAHGGVCYLRFDD---TNPEKEEEEYFESIKEMVA---WLGFEPYKVT- 318 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeech-hhhhhhCCeEEEecCC---CCcchhhHHHHHHHHHHHH---HhCCCceeee-
Confidence 367787754 5999999974322333 123332 344454444 3433 23333334444433 2699998755
Q ss_pred EEcCCch-hhhhHHHH-------HhhcccHHHHhhhhhHH
Q 014899 152 FVQSHVR-AHVELMWL-------LSSATPIGWLNKMIQFK 183 (416)
Q Consensus 152 f~QS~v~-e~~el~w~-------L~~~~~~~~l~R~~~~k 183 (416)
..||+. +..+++-. +.|+.+..++.+...++
T Consensus 319 -ysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 319 -YSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred -cchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 458863 44444443 34788888877444444
No 171
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=25.98 E-value=2.4e+02 Score=25.07 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014899 354 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 406 (416)
Q Consensus 354 ~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~kAr~iA~~tl~~ 406 (416)
..+|..|=++|.+.+.|.=. -..+.+..++++.+-....+++|+++|.+
T Consensus 19 Q~lKl~VRD~Vl~~l~~~~~----~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPWLS----QAKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46899999999999888633 23456778888888888999999988875
No 172
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.96 E-value=2.9e+02 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=15.1
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcCc-EEEEEe
Q 014899 82 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV 114 (416)
Q Consensus 82 i~PTG~lHLGnylg~i~~~~~lQ~~~~-~~i~Ia 114 (416)
|+| +|+||.-- ++... +.+| ++|+++
T Consensus 9 F~P---~H~GHl~~-i~~a~---~~~d~v~v~i~ 35 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWIL---EEVDELIIGIG 35 (174)
T ss_pred cCC---CCHHHHHH-HHHHH---HhCCEEEEEec
Confidence 566 99999743 33332 2454 555564
No 173
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=24.60 E-value=1.9e+02 Score=30.16 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=41.9
Q ss_pred CceEE-EecCCCCcchhhhHHHHHH--HHHHHhhc--CcEEEEE-eCccee--cC-----CCCHH-HHHHHHHHHHHHHH
Q 014899 75 KKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQNS--YETLFFI-VDLHAI--TL-----PYDTQ-QLSKATRETAAIYL 140 (416)
Q Consensus 75 ~~~i~-sGi~PTG~lHLGnylg~i~--~~~~lQ~~--~~~~i~I-aDlhA~--t~-----~~~~~-~i~~~~~~~~a~~l 140 (416)
..++| +|--|=+.+||||..+.+. -+.++++. ++|.+.. .|.|.- +. ..+++ -.+.++..+.+++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444 4666669999999877551 13344443 5765443 344421 11 12443 44555667888889
Q ss_pred HcCc-cCC
Q 014899 141 ACGI-DNS 147 (416)
Q Consensus 141 A~Gl-Dp~ 147 (416)
++|+ .|+
T Consensus 89 ~Lni~~~~ 96 (384)
T PRK12418 89 ALRVLPPR 96 (384)
T ss_pred HhCCCCCC
Confidence 9997 553
No 174
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=23.81 E-value=1e+02 Score=25.96 Aligned_cols=69 Identities=13% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHH
Q 014899 330 LSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD--GAAKAADI 399 (416)
Q Consensus 330 l~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~--Ga~kAr~i 399 (416)
-.++++++.+++++|......+..-+ +..+.+++.+|..-++..-.-.....++++++|.. |.++|+.+
T Consensus 24 a~vlk~l~~~ei~~i~~~ma~l~~v~-~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg~~~a~~i 94 (108)
T PF14842_consen 24 AEVLKHLDEEEIERISREMAKLGSVS-PEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALGEEKAKEI 94 (108)
T ss_dssp HHHHHHS-HHHHHHHHHHHHT------HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS---HHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCCHHHHHHH
Confidence 34666777777777777765432111 22233333444443444333344556677777763 55555544
No 175
>PLN02959 aminoacyl-tRNA ligase
Probab=23.34 E-value=49 Score=39.18 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=18.6
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--CcEEE
Q 014899 84 PTGSIHLGNYLGAIKN--WIALQNS--YETLF 111 (416)
Q Consensus 84 PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i 111 (416)
++|.+||||.+....+ ..++|.. ++|.+
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 3699999998875533 4556664 45543
No 176
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=23.33 E-value=54 Score=38.32 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=26.8
Q ss_pred CceEEEec-CCCCcchhhhHHHHH-HH-HHHHhhc--CcEEEEE-eCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAI-KN-WIALQNS--YETLFFI-VDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i-~~-~~~lQ~~--~~~~i~I-aDlhA~ 119 (416)
++.++.|. -|||.+|+||.+.-. +. +.+++.. ++|.+.. -|-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 45666665 257999999987644 22 3445443 5664333 466655
No 177
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.28 E-value=59 Score=37.40 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh--cCChh
Q 014899 277 GLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWG 354 (416)
Q Consensus 277 g~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~--~l~~~ 354 (416)
| .|||||.. |+++=+..++|.++|.|.+... ++.+.
T Consensus 591 G-RKMSKSLG-----------------------------------------NVIDPlDVI~Gisle~L~~~L~~gNLdp~ 628 (995)
T KOG0432|consen 591 G-RKMSKSLG-----------------------------------------NVIDPLDVIDGISLEKLHAKLLSGNLDPR 628 (995)
T ss_pred c-cccchhhc-----------------------------------------cccCHHHHhccccHHHHHHHHHcCCCCHH
Q ss_pred hHHHHHHHHHHHhhhHHHH
Q 014899 355 TFKPLLTDALIEHLHPIQV 373 (416)
Q Consensus 355 dlK~~Lae~I~~~L~pire 373 (416)
|++++.+..-.++=..|-+
T Consensus 629 Ev~~a~~gq~kdFPnGIpe 647 (995)
T KOG0432|consen 629 EVEKAKKGQKKDFPNGIPE 647 (995)
T ss_pred HHHHHHHHHHhhcCCCCcc
No 178
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=23.15 E-value=57 Score=38.09 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=26.1
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~ 119 (416)
+.+..|. -++|.+|+||.+..+.+ +++++.. ++|.+ .-=|-|.+
T Consensus 56 f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 56 FVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 4555554 24699999998875532 4455554 56543 33455555
No 179
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=22.02 E-value=4.3e+02 Score=28.78 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.9
Q ss_pred cccceeecccchHHHHHHHHHHHHHHh
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVN 238 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n 238 (416)
.++|....|.--.|-+.+.|.+.+-+|
T Consensus 140 v~P~~a~fGeKD~QQl~vir~mv~dL~ 166 (512)
T PRK13477 140 VQPKRAYFGEKDWQQLAIIRRLVADLN 166 (512)
T ss_pred cCCCeeeecccHHHHHHHHHHHHHHcC
Confidence 389999999999999999999999877
No 180
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.63 E-value=2.3e+02 Score=24.28 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 014899 391 DGAAKAADIADATLNNVYQAMG 412 (416)
Q Consensus 391 ~Ga~kAr~iA~~tl~~Vr~~~G 412 (416)
+-++++|+.|+.-|+++++.||
T Consensus 37 ~e~~~lR~r~~~~Lk~~r~rl~ 58 (104)
T COG4575 37 DEAEELRSKAESALKEARDRLG 58 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777665
No 181
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.59 E-value=4.6e+02 Score=25.11 Aligned_cols=67 Identities=6% Similarity=0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHHHhhhH-HHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 014899 341 KGEVAEECQ-NMNWGTFKPLLTDALIEHLHP-IQVRYEEIMSDSAYLDKVLADGAA--KAADIADATLNNVYQ 409 (416)
Q Consensus 341 ~eel~~~y~-~l~~~dlK~~Lae~I~~~L~p-irer~~~~~~d~~~l~~iL~~Ga~--kAr~iA~~tl~~Vr~ 409 (416)
+|++.++|. ..+- ..-.++|-.+++.+.+ ..++.+...++|+ ++++-+--++ +.|.+--+++++|.+
T Consensus 80 Le~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvld 150 (217)
T KOG0859|consen 80 LERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLD 150 (217)
T ss_pred HHHHHHHHHHHhcc-chhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777764 2221 2566899999988877 4567777788887 8877664443 455555566666554
No 182
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=21.30 E-value=1.1e+02 Score=30.57 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=42.6
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
.++|..-.|..-.|.+++-|++++.++ | |..++.. +.+.. .|| ..||+-+
T Consensus 140 v~Pd~~~FG~kd~gq~~~Lk~~~~dl~------------------~--~v~ii~~--~~vr~-~dG-laiSSRN------ 189 (277)
T cd00560 140 VQPDRAYFGEKDAQQLAVIRRMVRDLN------------------L--PVEIVGC--PTVRE-EDG-LALSSRN------ 189 (277)
T ss_pred cCCCeEEECCCccccHHHHHHHHHHcC------------------C--eEEEEcC--Cceec-CCC-ceEeCCC------
Confidence 378988888888888888888888755 2 2223321 11111 145 5898874
Q ss_pred eecCCCHHHHHHHhhhccc
Q 014899 292 INLLDPKDVIANKIKRCKT 310 (416)
Q Consensus 292 I~L~D~~e~I~kKI~kA~T 310 (416)
.+|+....+....|-++.+
T Consensus 190 ~~Ls~~~r~~A~~l~~~L~ 208 (277)
T cd00560 190 VYLSAEERKEALALYRALK 208 (277)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4666666666666655543
No 183
>PF15605 Toxin_52: Putative toxin 52
Probab=20.62 E-value=1.2e+02 Score=25.74 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=23.3
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014899 379 MSDSAYLDKVLADGAAKAADIADATLNNVYQAM 411 (416)
Q Consensus 379 ~~d~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~~~ 411 (416)
+.||. +.+..++=++++...|..+|+.|.+.+
T Consensus 70 L~np~-l~~~~r~~lq~~l~ea~~~l~kiE~~~ 101 (103)
T PF15605_consen 70 LKNPN-LSGRTRELLQSKLNEANNYLDKIEDFF 101 (103)
T ss_pred cCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56663 455556667778888899999998765
No 184
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.50 E-value=3.6e+02 Score=23.73 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 014899 393 AAKAADIADATLNNVYQAMG 412 (416)
Q Consensus 393 a~kAr~iA~~tl~~Vr~~~G 412 (416)
.+.-..+|.+-|++|.+.|.
T Consensus 36 ~e~lEsiAAKIIkDisdkId 55 (121)
T PF03310_consen 36 QENLESIAAKIIKDISDKID 55 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887763
No 185
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.37 E-value=1.1e+02 Score=31.53 Aligned_cols=27 Identities=41% Similarity=0.748 Sum_probs=20.2
Q ss_pred CCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcc
Q 014899 85 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 117 (416)
Q Consensus 85 TG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlh 117 (416)
.|..||||| |+.++ ..+.|+|-|+|+-
T Consensus 62 cGD~HLgN~-ga~~~-----~~G~V~f~i~DFD 88 (410)
T COG4320 62 CGDAHLGNF-GAARN-----SKGNVVFKIADFD 88 (410)
T ss_pred ecccccccc-hhhcc-----CCCceEEEecccc
Confidence 478999998 65432 2378999999974
No 186
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=20.19 E-value=70 Score=38.34 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=26.8
Q ss_pred ceEEEec-CCCCcchhhhHHHHH-HH-HHHHhhc--CcEEE-EEeCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAI-KN-WIALQNS--YETLF-FIVDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i-~~-~~~lQ~~--~~~~i-~IaDlhA~ 119 (416)
+.++.|- -+||.+|+||.+... +. +.+++.. ++|.+ +--|-|.+
T Consensus 104 Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 104 YIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 4556664 256999999987644 22 3445543 66654 33566666
No 187
>PLN02882 aminoacyl-tRNA ligase
Probab=20.11 E-value=69 Score=38.22 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=27.4
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~ 119 (416)
+.++.|- -+||.+|+||.+....+ +.+++.. ++|. .+--|-|.+
T Consensus 40 f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 40 YIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 5566664 25799999998764422 3455554 5664 444577766
Done!