Query 014899
Match_columns 416
No_of_seqs 188 out of 1362
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 03:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 4.4E-96 2E-100 744.6 34.5 326 75-415 35-360 (388)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 2.6E-96 9E-101 736.8 31.7 331 75-415 6-339 (341)
3 3n9i_A Tryptophanyl-tRNA synth 100.0 7.4E-96 3E-100 734.1 34.0 328 75-415 15-344 (346)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 4.4E-91 1.5E-95 696.8 34.6 326 76-416 2-327 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 4.6E-91 1.6E-95 701.5 30.0 326 75-414 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 1.6E-89 5.4E-94 683.9 33.0 317 75-413 3-322 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 2.2E-87 7.6E-92 672.3 34.3 320 76-414 2-328 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 5.6E-87 1.9E-91 672.5 35.0 330 68-415 15-350 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 4.7E-87 1.6E-91 670.5 31.5 320 74-414 11-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 3.1E-72 1.1E-76 571.2 22.1 286 74-395 72-371 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 1.4E-69 4.8E-74 549.5 21.0 280 74-389 69-367 (372)
12 3vgj_A Tyrosyl-tRNA synthetase 100.0 6.9E-68 2.3E-72 537.2 26.8 281 74-388 55-366 (373)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 2.4E-68 8.2E-73 541.2 20.6 274 75-379 33-362 (375)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.6E-67 5.4E-72 530.5 22.3 268 74-378 39-331 (348)
15 2cya_A Tyrosyl-tRNA synthetase 100.0 2.5E-67 8.5E-72 532.0 22.9 269 74-378 34-348 (364)
16 2ip1_A Tryptophanyl-tRNA synth 100.0 1.7E-68 5.7E-73 550.4 9.4 301 74-408 101-432 (432)
17 3tze_A Tryptophanyl-tRNA synth 100.0 2.7E-66 9.3E-71 529.3 21.7 274 74-381 100-395 (406)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.6E-65 1.2E-69 551.0 26.6 291 74-390 39-360 (690)
19 3hzr_A Tryptophanyl-tRNA synth 100.0 1.3E-65 4.5E-70 521.5 21.7 279 74-388 81-380 (386)
20 3hv0_A Tryptophanyl-tRNA synth 100.0 1.7E-64 5.8E-69 514.7 20.8 282 74-390 73-379 (393)
21 3i05_A Tryptophanyl-tRNA synth 100.0 5.5E-65 1.9E-69 518.6 14.8 287 74-396 77-392 (395)
22 2cyb_A Tyrosyl-tRNA synthetase 100.0 2.5E-63 8.4E-68 495.6 24.1 265 74-378 31-322 (323)
23 3foc_A Tryptophanyl-tRNA synth 100.0 3.7E-64 1.3E-68 518.0 18.5 280 74-388 90-444 (451)
24 2zp1_A Tyrosyl-tRNA synthetase 100.0 9.1E-62 3.1E-66 482.6 23.6 257 74-377 27-308 (314)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 3.1E-62 1.1E-66 503.4 16.1 280 74-389 107-414 (437)
26 2dlc_X Tyrosyl-tRNA synthetase 100.0 8.1E-61 2.8E-65 489.0 22.8 279 74-393 38-355 (394)
27 1r6t_A Tryptophanyl-tRNA synth 100.0 1.9E-61 6.4E-66 503.4 17.0 280 74-389 154-461 (477)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 3.6E-60 1.2E-64 480.9 23.4 265 74-376 34-329 (372)
29 1h3f_A Tyrosyl-tRNA synthetase 100.0 2E-60 6.8E-65 490.2 19.8 286 74-407 36-345 (432)
30 2yxn_A Tyrosyl-tRNA synthetase 100.0 2E-59 6.8E-64 467.2 19.0 262 74-376 32-319 (322)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 1.7E-56 5.9E-61 451.3 18.6 260 74-376 45-338 (356)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 7.1E-56 2.4E-60 455.6 20.1 261 74-376 31-316 (432)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 2.7E-54 9.3E-59 439.9 20.8 274 74-377 63-378 (392)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 2.7E-54 9.2E-59 442.9 17.6 263 74-377 29-315 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.2E-53 4.1E-58 438.8 22.0 258 74-376 31-315 (420)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.2E-48 4.1E-53 422.3 26.4 263 68-376 375-669 (690)
37 1nzj_A Hypothetical protein YA 99.1 4.9E-11 1.7E-15 117.3 5.9 175 82-286 12-234 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.0 5.1E-10 1.7E-14 117.1 9.3 197 83-307 14-286 (498)
39 1j09_A Glutamyl-tRNA synthetas 98.9 8.6E-10 2.9E-14 114.6 5.5 192 83-307 9-272 (468)
40 3afh_A Glutamyl-tRNA synthetas 98.8 5.9E-10 2E-14 116.4 1.6 199 76-307 26-284 (488)
41 3al0_C Glutamyl-tRNA(Gln) amid 98.7 1.2E-09 4.2E-14 116.4 -0.5 199 76-307 130-388 (592)
42 2cfo_A Glutamyl-tRNA synthetas 98.6 3.6E-07 1.2E-11 95.5 13.8 193 81-307 7-276 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.2 1.8E-05 6.3E-10 82.4 15.9 199 76-307 14-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.8 3.5E-05 1.2E-09 80.4 9.0 200 75-307 25-293 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.6 0.0004 1.4E-08 73.2 12.0 176 78-285 97-334 (553)
46 2csx_A Methionyl-tRNA syntheta 97.3 0.00067 2.3E-08 70.4 9.8 79 76-156 6-99 (497)
47 2d5b_A Methionyl-tRNA syntheta 97.2 0.001 3.4E-08 69.0 10.3 79 76-156 4-97 (500)
48 4gri_A Glutamate--tRNA ligase; 97.1 0.0018 6.1E-08 67.9 10.8 181 77-286 24-279 (512)
49 3h99_A Methionyl-tRNA syntheta 97.0 0.0049 1.7E-07 64.9 12.6 73 76-148 19-106 (560)
50 4dlp_A Aminoacyl-tRNA syntheta 96.9 0.0066 2.3E-07 63.6 13.1 79 76-156 26-119 (536)
51 1iq0_A Arginyl-tRNA synthetase 96.0 0.0039 1.3E-07 66.4 4.3 41 76-116 106-152 (592)
52 3tqo_A Cysteinyl-tRNA syntheta 96.0 0.24 8.3E-06 51.1 17.4 71 78-148 29-112 (462)
53 1qtq_A GLNRS, protein (glutami 94.1 0.069 2.4E-06 56.3 6.8 76 76-158 27-103 (553)
54 2zue_A Arginyl-tRNA synthetase 93.8 0.089 3E-06 56.4 7.1 39 78-116 124-168 (629)
55 2hz7_A Glutaminyl-tRNA synthet 93.6 0.098 3.4E-06 57.7 7.1 74 78-158 67-143 (851)
56 3u1f_A Methionyl-tRNA syntheta 91.9 0.53 1.8E-05 48.9 9.6 86 74-162 9-108 (542)
57 1irx_A Lysyl-tRNA synthetase; 91.7 0.25 8.5E-06 51.5 6.7 78 76-156 22-129 (523)
58 3kfl_A Methionyl-tRNA syntheta 87.2 2.7 9.1E-05 44.1 10.5 86 67-155 19-119 (564)
59 1rqg_A Methionyl-tRNA syntheta 86.8 1.7 5.9E-05 47.1 9.0 74 75-148 3-91 (722)
60 2x1l_A Methionyl-tRNA syntheta 85.6 0.25 8.7E-06 51.2 1.6 72 83-156 22-106 (524)
61 3kfl_A Methionyl-tRNA syntheta 85.1 0.26 9E-06 51.9 1.4 56 212-295 293-351 (564)
62 3u1f_A Methionyl-tRNA syntheta 83.6 0.47 1.6E-05 49.3 2.6 54 213-294 278-334 (542)
63 1wkb_A Leucyl-tRNA synthetase; 83.3 0.51 1.8E-05 51.7 2.8 60 212-295 602-662 (810)
64 2x1l_A Methionyl-tRNA syntheta 82.4 3.6 0.00012 42.5 8.7 59 212-295 264-322 (524)
65 1li5_A Cysrs, cysteinyl-tRNA s 82.4 0.82 2.8E-05 47.0 3.7 80 76-156 23-116 (461)
66 1wz2_A Leucyl-tRNA synthetase; 80.7 0.7 2.4E-05 51.8 2.7 70 212-305 602-677 (967)
67 3fnr_A Arginyl-tRNA synthetase 79.7 0.33 1.1E-05 50.2 -0.4 38 79-116 36-79 (464)
68 1ffy_A Isoleucyl-tRNA syntheta 79.6 0.94 3.2E-05 50.6 3.2 58 211-295 546-607 (917)
69 1gax_A Valrs, valyl-tRNA synth 79.3 0.66 2.3E-05 51.5 1.9 60 212-295 480-540 (862)
70 1ile_A Ilers, isoleucyl-tRNA s 79.3 0.92 3.1E-05 49.9 3.0 14 212-225 543-556 (821)
71 3c8z_A Cysteinyl-tRNA syntheta 78.4 0.77 2.6E-05 46.4 2.0 78 77-156 42-133 (414)
72 3c8z_A Cysteinyl-tRNA syntheta 70.4 18 0.00061 36.3 9.7 30 205-234 236-266 (414)
73 3sp1_A Cysteinyl-tRNA syntheta 69.5 22 0.00075 36.9 10.2 73 75-148 42-139 (501)
74 1gax_A Valrs, valyl-tRNA synth 67.9 7.9 0.00027 42.8 6.9 45 75-119 35-85 (862)
75 4arc_A Leucine--tRNA ligase; l 67.4 11 0.00039 41.7 8.1 73 75-147 54-140 (880)
76 2v0c_A Aminoacyl-tRNA syntheta 65.3 3.4 0.00012 45.8 3.4 25 212-236 530-555 (878)
77 3sp1_A Cysteinyl-tRNA syntheta 63.7 3.2 0.00011 43.2 2.5 30 204-233 244-274 (501)
78 4arc_A Leucine--tRNA ligase; l 60.6 5.9 0.0002 44.0 4.1 27 212-238 542-569 (880)
79 1irx_A Lysyl-tRNA synthetase; 59.6 3.3 0.00011 43.0 1.8 71 212-307 229-308 (523)
80 3foc_A Tryptophanyl-tRNA synth 54.0 3 0.0001 42.8 0.3 13 217-229 237-249 (451)
81 2v0c_A Aminoacyl-tRNA syntheta 53.6 15 0.00052 40.7 5.9 73 75-147 34-120 (878)
82 1rqg_A Methionyl-tRNA syntheta 50.1 5.9 0.0002 42.9 1.9 44 257-308 326-374 (722)
83 1li5_A Cysrs, cysteinyl-tRNA s 48.8 35 0.0012 34.7 7.4 77 205-306 212-294 (461)
84 1wkb_A Leucyl-tRNA synthetase; 46.5 28 0.00097 37.9 6.6 44 76-119 36-85 (810)
85 3oqi_A YVMC, putative uncharac 44.0 67 0.0023 30.4 7.9 80 75-158 29-121 (257)
86 1ile_A Ilers, isoleucyl-tRNA s 42.7 10 0.00035 41.5 2.4 45 75-119 39-89 (821)
87 3cov_A Pantothenate synthetase 40.5 52 0.0018 31.8 6.7 68 212-309 151-218 (301)
88 1f7u_A Arginyl-tRNA synthetase 39.3 20 0.00067 38.1 3.8 38 79-116 149-192 (607)
89 3fnr_A Arginyl-tRNA synthetase 37.8 21 0.00072 36.5 3.7 61 214-296 235-298 (464)
90 1ffy_A Isoleucyl-tRNA syntheta 36.0 13 0.00045 41.3 1.9 45 75-119 49-99 (917)
91 1wz2_A Leucyl-tRNA synthetase; 34.8 14 0.00048 41.3 1.9 45 75-119 35-85 (967)
92 1f7u_A Arginyl-tRNA synthetase 32.9 18 0.00061 38.4 2.3 39 197-238 343-390 (607)
93 3oqv_A ALBC; rossman fold, cyc 30.8 83 0.0029 29.5 6.2 83 74-158 28-123 (247)
94 1y66_A Engrailed homeodomain; 23.1 68 0.0023 22.0 2.9 31 384-414 7-37 (52)
95 3inn_A Pantothenate synthetase 21.1 1.4E+02 0.0047 29.0 5.9 27 212-238 160-186 (314)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=4.4e-96 Score=744.64 Aligned_cols=326 Identities=48% Similarity=0.762 Sum_probs=305.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+++|||||+|||.+|||||+|+|++|++||+.++|+|+||||||+|++.+++++++++++++++|+||||||+|++||+|
T Consensus 35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q 114 (388)
T 3prh_A 35 KQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ 114 (388)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CCeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence 34699999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
|+|++|+|++|+|+|.+++++|+|+++||++.+.. +++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 115 S~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia 192 (388)
T 3prh_A 115 SEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLA 192 (388)
T ss_dssp GGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHH
Confidence 99999999999999999999999999999886543 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~ 314 (416)
+|||+.|| .+|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 193 ~rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~ 260 (388)
T 3prh_A 193 ERFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEG 260 (388)
T ss_dssp HHHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSC
T ss_pred HHhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCC
Confidence 99999998 468999999987668999998888999999998889999999999999999999999998
Q ss_pred CcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 014899 315 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAA 394 (416)
Q Consensus 315 ~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~ 394 (416)
.++++++++|+++|++.||++++++++++++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|++||++|++
T Consensus 261 ~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~il~~Ga~ 339 (388)
T 3prh_A 261 IVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAE 339 (388)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHH
T ss_pred cccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHH
Confidence 88999999999999999999999999999999998779999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 014899 395 KAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 395 kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
|||++|++||++||++|||.+
T Consensus 340 kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 340 RANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999964
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.6e-96 Score=736.82 Aligned_cols=331 Identities=44% Similarity=0.737 Sum_probs=314.1
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+++|||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+||||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
|+|++|.+|+|+|+|++++++|+||++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999877653 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~ 314 (416)
+|||++||.. .++|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999831 1358999999986558999998888899999987789999999999999999999999987
Q ss_pred --CcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhc-CChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHH
Q 014899 315 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 391 (416)
Q Consensus 315 --~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~-l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~ 391 (416)
.+.++++++|+++|++.||.+|+++++++++++|.+ ++|++||+.|+++|+++|+|||+||+++++|+++|++||++
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~ 315 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRD 315 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 567788999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Q 014899 392 GAAKAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 392 Ga~kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
|++|||++|++||++||++|||.+
T Consensus 316 G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 316 GAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999975
No 3
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=7.4e-96 Score=734.07 Aligned_cols=328 Identities=47% Similarity=0.764 Sum_probs=313.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+++||||++|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++.+++++++++++|+||||||+|++||+|
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~q 94 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQ 94 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEG
T ss_pred CCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence 57999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
|+|++|.+++|+|+|.+++++|+|+++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+|||||+|
T Consensus 95 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia 173 (346)
T 3n9i_A 95 SHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIA 173 (346)
T ss_dssp GGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999876643 5789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~ 314 (416)
+|||++|| .+|++|++++++++++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 174 ~rfn~~yg------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~ 241 (346)
T 3n9i_A 174 SRFNNLYG------------DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241 (346)
T ss_dssp HHHHHHHS------------SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCS
T ss_pred HHhccccC------------CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCC
Confidence 99999998 468999999987668999998898899999987679999999999999999999999976
Q ss_pred --CcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHH
Q 014899 315 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 392 (416)
Q Consensus 315 --~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~G 392 (416)
.+.++++++|+++|++.||..++++++++++++|++.++++||+.|+++|+++|+|||+||+++++|+++|++||++|
T Consensus 242 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 242 PALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 356788899999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Q 014899 393 AAKAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 393 a~kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
++|||++|++||++||++|||.+
T Consensus 322 ~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 322 AAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999975
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=4.4e-91 Score=696.77 Aligned_cols=326 Identities=48% Similarity=0.775 Sum_probs=309.0
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcC
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 155 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS 155 (416)
++|||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHHH
Q 014899 156 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 235 (416)
Q Consensus 156 ~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA~ 235 (416)
+|++|.+++|+++|.+++++|+||++||++..+ + +++++|+|+||+||||||++|++|+||||.||+||+|++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988654 2 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCCC
Q 014899 236 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315 (416)
Q Consensus 236 r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~ 315 (416)
|||+.|| ++|++|++++++.+++||||++|++|||||+++..|+|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg------------~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCcccc------------cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 9999998 5799999999865689999977678999999742233999999999999999999999988
Q ss_pred cccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 014899 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 395 (416)
Q Consensus 316 ~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga~k 395 (416)
+.+++.++|++++++.||++++++++++++++|.+++|++||+.||+.|+++|+|||++|+++++|++ |++||++|++|
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~il~~g~~~ 306 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVLDEGAEK 306 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHHHHHHHHHH
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHHHHHHHHHH
Confidence 88898788999999999999999999999999998999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 014899 396 AADIADATLNNVYQAMGFLRR 416 (416)
Q Consensus 396 Ar~iA~~tl~~Vr~~~Gl~~~ 416 (416)
||++|++||++||++|||.+|
T Consensus 307 a~~~a~~~~~~v~~~~g~~~~ 327 (328)
T 1i6k_A 307 ANRVASEMVRKMEQAMGLGRR 327 (328)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999753
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=4.6e-91 Score=701.51 Aligned_cols=326 Identities=36% Similarity=0.561 Sum_probs=307.2
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+++|||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-----CCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 229 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-----~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleL 229 (416)
|++++|.+++|+++|++++++|+|+++||++.++.+ .+++++|+|+||+||||||++|++|+||||.||+||+|+
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765432 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcc
Q 014899 230 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 309 (416)
Q Consensus 230 aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~ 309 (416)
+||+|+|||+.|| ++|++|++++++.+++||||++|++|||||+++++|+|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg------------~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFK------------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHC------------CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhcc------------cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 9999999999998 5699999999865589999977778999999854459999999999999999999
Q ss_pred cCCCCCcccCCCCCCccchHHHHHHhhcCCCHH---------HHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhc
Q 014899 310 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 380 (416)
Q Consensus 310 Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~e---------el~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~ 380 (416)
||+.+++.+++.++|++++++.||++|++++++ +++++|.+++|++||+.|+++|+++|+|||+||+++ +
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~-~ 310 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI-S 310 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 999988899988899999999999999999999 999999989999999999999999999999999999 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014899 381 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 414 (416)
Q Consensus 381 d~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~ 414 (416)
|++ |++||++|++|||++|++||++||++|||.
T Consensus 311 d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 311 REQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888 999999999999999999999999999995
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.6e-89 Score=683.87 Aligned_cols=317 Identities=34% Similarity=0.597 Sum_probs=298.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
..+|||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 46899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHHHHH
Q 014899 155 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 234 (416)
Q Consensus 155 S~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaRdiA 234 (416)
|+|++|.+++|+++|.+++++|+|+++||++.... +++++|+|+||+||||||++|++|+||||.||+||+++|||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876543 5799999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccCCCC
Q 014899 235 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314 (416)
Q Consensus 235 ~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~ 314 (416)
+|||++|| ++|++|++++....++|||| +| +|||||++ |+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~r~n~~~g------------~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWG------------EIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHC------------SCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhccccc------------CCCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 99999998 56999999986555899999 67 79999985 6899999999999999999999987
Q ss_pred CcccCCCCCCccchHHHHHHhhc-CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHH
Q 014899 315 GLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 391 (416)
Q Consensus 315 ~~~~~~~~rp~v~~ll~i~~~~s-~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~ 391 (416)
. + ++++|+++++++|+++|+ ++++++++++|. ++++++||+.||+.|+++|+|||+||+++++|+++|++||++
T Consensus 224 ~--~-~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~ 300 (322)
T 3tzl_A 224 L--E-DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDF 300 (322)
T ss_dssp T--T-SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred c--c-CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHH
Confidence 5 2 357899999999999995 557999999997 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 014899 392 GAAKAADIADATLNNVYQAMGF 413 (416)
Q Consensus 392 Ga~kAr~iA~~tl~~Vr~~~Gl 413 (416)
|++|||++|++||++||++|||
T Consensus 301 G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 301 GATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999997
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-87 Score=672.29 Aligned_cols=320 Identities=44% Similarity=0.706 Sum_probs=293.2
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc--CcEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
++|||||+|||.+|||||+|+|++|++||+. ++++|+||||||+|++ .+++.+++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 5899999999999999999999999999998 8999999999999987 79999999999999999999999999999
Q ss_pred EEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHHHHH
Q 014899 152 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 231 (416)
Q Consensus 152 f~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hleLaR 231 (416)
|+||+|++|.+++|+++|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||+||++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999987643 36789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcccC
Q 014899 232 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311 (416)
Q Consensus 232 diA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td 311 (416)
|+|+|||+.|| .+|++|+++++.++++|||| +|++|||||++ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g------------~~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFG------------ETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHS------------SCCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcC------------cccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 99999999998 56899999998766799999 56679999985 5899999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhhcCC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHH
Q 014899 312 SSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 388 (416)
Q Consensus 312 ~~~~~~~~~~~rp~v~~ll~i~~~~s~~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~i 388 (416)
+.+++.+++ ++|++|++++||++|++. ++++++++|. +++++++|+.||+.|+++|+|+|++|+++++|+++|++|
T Consensus 224 ~~~~~~~~~-~~p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~i 302 (337)
T 2el7_A 224 PQRIRLSDP-GDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDA 302 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CccccccCC-CCCchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHH
Confidence 988888876 559999999999999987 9999999998 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014899 389 LADGAAKAADIADATLNNVYQAMGFL 414 (416)
Q Consensus 389 L~~Ga~kAr~iA~~tl~~Vr~~~Gl~ 414 (416)
|++|++|||++|++||++||++|||.
T Consensus 303 l~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 303 LLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999985
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=5.6e-87 Score=672.51 Aligned_cols=330 Identities=29% Similarity=0.427 Sum_probs=303.0
Q ss_pred CCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccC
Q 014899 68 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDN 146 (416)
Q Consensus 68 ~~~~~~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp 146 (416)
...+...+++|||||+|||.+|||||+|+|++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+|+||
T Consensus 15 ~~~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp 94 (351)
T 1yi8_B 15 TPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDP 94 (351)
T ss_dssp ------CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred cccccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCCh
Confidence 333445679999999999999999999999999999999999999999999998 6899999999999999999999999
Q ss_pred CCeEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhhcccceeecccchHH
Q 014899 147 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 225 (416)
Q Consensus 147 ~k~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~ 225 (416)
+|+.||+||+|++|.++.|+++|.+++++|+|+++||++....+ .+++++|+|+||+||||||++|++|+||||.||+|
T Consensus 95 ~k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~ 174 (351)
T 1yi8_B 95 QKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLP 174 (351)
T ss_dssp TTEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred hhcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHH
Confidence 99999999999999999999999999999999999999876553 36789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHh
Q 014899 226 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 305 (416)
Q Consensus 226 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI 305 (416)
|++++||||+|||+.|| .+|++|+++++. .++|||| ||++|||||++ |+|+|+|+|++|++||
T Consensus 175 hi~l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki 237 (351)
T 1yi8_B 175 MLEQTREIVRRFNALYA------------PVLAEPQAQLSR-VPRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKV 237 (351)
T ss_dssp HHHHHHHHHHHHHHHTC------------SCSCCCEEEECS-SCSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc------------cccCCCeeeeec-CccccCC-CCccccCCCCC---CeecCCCCHHHHHHHH
Confidence 99999999999999998 568999998863 2799999 78779999985 5899999999999999
Q ss_pred hhcccCCCCCcccCCCCCCccchHHHHHHhhcC-C-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcC
Q 014899 306 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSD 381 (416)
Q Consensus 306 ~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~-~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d 381 (416)
++|+||+.+.+.+++ ++|++|+++.++++|+. . ++++++++|. +++|++||+.||+.|+++|+|+|+||+++++|
T Consensus 238 ~~a~td~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~ 316 (351)
T 1yi8_B 238 MGMYTDPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERD 316 (351)
T ss_dssp HTCCCCTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCCCcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcC
Confidence 999999988777776 66888899999998873 3 4689999997 58999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014899 382 SAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 415 (416)
Q Consensus 382 ~~~l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~~ 415 (416)
+++|++||++|++|||++|++||++||++|||.+
T Consensus 317 ~~~l~~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 317 PDAVLRFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 9999999999999999999999999999999965
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=4.7e-87 Score=670.52 Aligned_cols=320 Identities=37% Similarity=0.576 Sum_probs=297.3
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
+.++||+|++|||.+|||||+|+|++|++||+. ++++|+||||||+|+ +.+|+.+++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 468999999999999999999999999999998 899999999999997 779999999999999999999999999999
Q ss_pred EEcCCchhhhhHHHHHhhcccHHHHhhhhhHHH---HhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHH
Q 014899 152 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 228 (416)
Q Consensus 152 f~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~---~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hle 228 (416)
|+||+|++|.++.|+++|.+++++|+|+++||+ +.+. .+++++|+|+||+||||||++|++|+||||.||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5432 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhc
Q 014899 229 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308 (416)
Q Consensus 229 LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA 308 (416)
++||+|+|||+.|| ++|++|++++.. .++|||| +|+ |||||++ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYD------------EVFPEPEAILSR-VPKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSC------------CCCCCCEEEECC-SCCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhcc------------cccCCchhhhcc-ccccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 99999999999998 569999987753 3799999 575 9999985 6899999999999999999
Q ss_pred ccCCCCCcccCCCCCCccchHHHHHHhhcC-C-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHH
Q 014899 309 KTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 384 (416)
Q Consensus 309 ~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~-~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~ 384 (416)
+||+.+.+.+++ ++|++|++++|+++|++ . ++++++++|. .+++++||+.||+.|+++|+|||+||+++++|+++
T Consensus 231 ~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~ 309 (340)
T 2g36_A 231 MTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHY 309 (340)
T ss_dssp CCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred CCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 999988888887 89999999999999985 3 4599999997 47899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014899 385 LDKVLADGAAKAADIADATLNNVYQAMGFL 414 (416)
Q Consensus 385 l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~ 414 (416)
|++||++|++|||++|++||++||++|||.
T Consensus 310 ~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 310 VDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999985
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.1e-72 Score=571.15 Aligned_cols=286 Identities=20% Similarity=0.282 Sum_probs=247.0
Q ss_pred CCceEEEecCCCCcchhhhHHHHH-HHHHHHhhc--CcEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHHcCccCCC
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
++++||||++|||.+|||||+|++ .+| ||+. ++++|+||||||++++ .+++++++++++++++|+|+|+||+|
T Consensus 72 ~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 149 (392)
T 3jxe_A 72 RGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDK 149 (392)
T ss_dssp CCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccc
Confidence 478999999999999999999986 788 8983 6899999999999873 69999999999999999999999999
Q ss_pred eEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc-ccceeecccchHHHH
Q 014899 149 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQHL 227 (416)
Q Consensus 149 ~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~-~adivpvG~DQ~~hl 227 (416)
++||+||+|++|.++.|.+++.++++++.++.+|+ +++++|+|+||+||||||+++ ++|+||||.||+||+
T Consensus 150 t~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl 221 (392)
T 3jxe_A 150 TFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYW 221 (392)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHH
T ss_pred eEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHHH
Confidence 99999999999999999999999999999887654 578999999999999999999 699999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh
Q 014899 228 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 307 (416)
Q Consensus 228 eLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~k 307 (416)
++|||+|+||| +++|.++++ ++||||+++++|||||+| +|+|+|+|+|++|++|||+
T Consensus 222 ~l~Rdla~r~n------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~k 278 (392)
T 3jxe_A 222 RLQRDFAESLG------------------YYKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVWK 278 (392)
T ss_dssp HHHHHHTGGGT------------------SCCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcC------------------CCCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHHh
Confidence 99999999988 568888876 499999655579999997 3799999999999999999
Q ss_pred -cccCCCCCcccCC--CCCCccchHHHHHHhhc---CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014899 308 -CKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIM 379 (416)
Q Consensus 308 -A~Td~~~~~~~~~--~~rp~v~~ll~i~~~~s---~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~ 379 (416)
|+||+.+++++++ +++|++|++++|+.+++ ++++++++++|. +++|++||+.|+++|+++|+|||+||+++.
T Consensus 279 ~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~ 358 (392)
T 3jxe_A 279 FTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE 358 (392)
T ss_dssp CC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987776644 68999999999999886 457899999997 489999999999999999999999999998
Q ss_pred cCHHHHHHHHHHHHHH
Q 014899 380 SDSAYLDKVLADGAAK 395 (416)
Q Consensus 380 ~d~~~l~~iL~~Ga~k 395 (416)
++|+++|..|+.+
T Consensus 359 ---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 359 ---KLVEKFKYTGKLA 371 (392)
T ss_dssp ---TSHHHHHTTSHHH
T ss_pred ---HHHHHHHHcCccc
Confidence 5899999999876
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=1.4e-69 Score=549.55 Aligned_cols=280 Identities=27% Similarity=0.362 Sum_probs=245.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC--CHHHHHHHHHHHHHHHHHcCccCCCeE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKAS 150 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~a~~lA~GlDp~k~~ 150 (416)
++++||||++|||.+|||||+|++ +|+.+|+. ++|+|+||||||+|++. +++.++.++++++++|+||||||+|++
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 478999999999999999999865 56678865 89999999999999854 667899999999999999999999999
Q ss_pred EEEcCC-chhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhh--------cccceeeccc
Q 014899 151 VFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 221 (416)
Q Consensus 151 if~QS~-v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~--------~~adivpvG~ 221 (416)
||+||+ +++|.++.|.+++.+++++++++.+ ..+.|.++||+||||||++ |++++||||.
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 999999 5789999999999999999987632 4578999999999999999 5566999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHH
Q 014899 222 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 301 (416)
Q Consensus 222 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I 301 (416)
||+||+|||||||+|||+.|+ +++|..++.+ ++||| +| .|||||+| +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~---~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYHK---LQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEEC---CCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhc---ccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999998887 7889888875 89999 66 69999997 4999999999999
Q ss_pred HHHhhhcccCCCCCcccC--CCCCCccchHHHHH--Hhh-cCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHH
Q 014899 302 ANKIKRCKTDSSAGLEFD--NLERPECNNLLSIY--QLI-SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVR 374 (416)
Q Consensus 302 ~kKI~kA~Td~~~~~~~~--~~~rp~v~~ll~i~--~~~-s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer 374 (416)
++|||+|+||+..+.+.. .+++|+++++++++ .++ +++++++++++|+ +++|+|||+.|++.|+++|+|+|+|
T Consensus 276 ~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer 355 (372)
T 3a04_A 276 RNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSR 355 (372)
T ss_dssp HHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776543 26899999998854 333 3457899999997 6999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHH
Q 014899 375 YEEIMSDSAYLDKVL 389 (416)
Q Consensus 375 ~~~~~~d~~~l~~iL 389 (416)
|++. +++++++|
T Consensus 356 ~e~~---~~~~~kil 367 (372)
T 3a04_A 356 LEKA---KTIAWKLV 367 (372)
T ss_dssp HHHH---HHHHHTSC
T ss_pred HHHh---HHHHHHHh
Confidence 9865 34566554
No 12
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=6.9e-68 Score=537.16 Aligned_cols=281 Identities=20% Similarity=0.259 Sum_probs=242.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
++++||+||+|||.+||||.+..+.+|++||++ ++++|+||||||++++ .+++++++++.+++++|+|+|+||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 368999999999999999943223368899997 7999999999999973 489999999999999999999999999
Q ss_pred EEEEcCCch-hhhhHHHHHhh----cccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchH
Q 014899 150 SVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 224 (416)
Q Consensus 150 ~if~QS~v~-e~~el~w~L~~----~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 224 (416)
+||+||+|+ +|.+++|.+.+ .++++|+.++.+++.+. . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~--~-~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS--E-GEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC--T-TSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh--c-cCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 99999998765 67999999998887532 1 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014899 225 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304 (416)
Q Consensus 225 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kK 304 (416)
+|++++||+|+|||++|+ |..+.. ++||||+||++|||||+| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996443 444443 599999889889999997 4899999999999999
Q ss_pred hhhcccCCCCCcccCCCCCCccchHHHHHHh--------h------------cCCCHHHHHHHHh--cCChhhHHHHHHH
Q 014899 305 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 362 (416)
Q Consensus 305 I~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~--------~------------s~~~~eel~~~y~--~l~~~dlK~~Lae 362 (416)
||+|+||+. +++.|+++.|+++ | +++++++++++|. +++|+|||++|++
T Consensus 270 I~kA~td~~---------~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae 340 (373)
T 3vgj_A 270 IKKAYCPPN---------VIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAM 340 (373)
T ss_dssp HHHSCCCTT---------CCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHhCcCCCC---------CCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999863 3455666665543 2 2468999999997 5899999999999
Q ss_pred HHHHhhhHHHHHHHHHhcCHHHHHHH
Q 014899 363 ALIEHLHPIQVRYEEIMSDSAYLDKV 388 (416)
Q Consensus 363 ~I~~~L~pirer~~~~~~d~~~l~~i 388 (416)
+|+++|+|||++|++....++++++|
T Consensus 341 ~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 341 YINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 99999999999999887766677665
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-68 Score=541.20 Aligned_cols=274 Identities=22% Similarity=0.288 Sum_probs=244.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCC---CCHHHHHHHH-HHHH----HHHHHcCcc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGID 145 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~-~~~~----a~~lA~GlD 145 (416)
++++||||+|||.+|||||++++++|++||++ ++++|+||||||+|++ .+++++++++ .+++ ++|+|||+|
T Consensus 33 ~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp CCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred CcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999998 8999999999999985 3899999999 8888 999999999
Q ss_pred CCCeEEEEcCCchhhhhHHHHH----hhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeeccc
Q 014899 146 NSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 221 (416)
Q Consensus 146 p~k~~if~QS~v~e~~el~w~L----~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~ 221 (416)
|+|++||+||+|++|. ++|.+ ++.++++|+.|+.+||++. . .+++++|+|+||+||||||++|++|+||||.
T Consensus 113 p~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~~~~~vp~G~ 188 (375)
T 2cyc_A 113 PKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQGVTIAHAGM 188 (375)
T ss_dssp GGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHTTCSEEEEEG
T ss_pred ccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHhCCCeecccc
Confidence 9999999999999998 89987 9999999999999999743 2 2568999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhh---hh-CCccccccCCCCCccccCCceecCCCCcccccCCCC----------------CCcc
Q 014899 222 DQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSKM 281 (416)
Q Consensus 222 DQ~~hleLaRdiA~r~n~---~y-g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg----------------~~KM 281 (416)
||+||+++|||+|+|||+ .| | +.| +|..+.. ++||||++| ++||
T Consensus 189 DQ~~~i~l~rdla~r~n~~~~~~~g------------~~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~KM 252 (375)
T 2cyc_A 189 DQRKAHVIAIEVAQKLRYHPIVHEG------------EKL-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMKM 252 (375)
T ss_dssp GGHHHHHHHHHHGGGCSSSCEEETT------------EEE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHBG
T ss_pred hHHHHHHHHHHHHHHhCCccccccc------------ccC-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhcc
Confidence 999999999999999996 23 2 112 5665543 599999654 4899
Q ss_pred ccCCCCCCCceecCCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhc---------------------CCC
Q 014899 282 SKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKT 340 (416)
Q Consensus 282 SKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s---------------------~~~ 340 (416)
|||+|+ |+|+|+|+|++|++|||+|+||+. +++.|++++|+++|+ +++
T Consensus 253 SKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~ 321 (375)
T 2cyc_A 253 SKSKPY--SAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTT 321 (375)
T ss_dssp GGSCGG--GSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESS
T ss_pred cCCCCC--CeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhH
Confidence 999974 899999999999999999999873 456789999998875 457
Q ss_pred HHHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014899 341 KGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 379 (416)
Q Consensus 341 ~eel~~~y~~--l~~~dlK~~Lae~I~~~L~pirer~~~~~ 379 (416)
+++++++|.+ ++|++||++||+.|+++|+|+|++|++..
T Consensus 322 ~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~ 362 (375)
T 2cyc_A 322 FEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHP 362 (375)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999984 89999999999999999999999998653
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.6e-67 Score=530.52 Aligned_cols=268 Identities=19% Similarity=0.260 Sum_probs=226.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC---CHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
.++++||||+|||.+|||||++.+.+|++||++ ++++|+||||||++++. +++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 368999999999999999999999999999997 89999999999999853 89999999999999999999999999
Q ss_pred EEEEcCCc-hhhhhHHHHHhh----cccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc---ccceeeccc
Q 014899 150 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 221 (416)
Q Consensus 150 ~if~QS~v-~e~~el~w~L~~----~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---~adivpvG~ 221 (416)
.||+||+| ++|. ++|.+.+ .++++++.|+.+++.+. . .+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~--~-~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN--E-SDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh--c-cCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999997 6776 8998775 77888888877777542 1 2568999999999999999999 999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHH
Q 014899 222 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 301 (416)
Q Consensus 222 DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I 301 (416)
||++|++++||+|+|||+ ..|..+.. ++||||+||++|||||+|+ |+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~------------------~~p~~~~~---~~l~gL~dg~~KMSKS~~~--~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGL------------------KIPISLSH---HMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTC------------------CCCEEEEB---CCCCCTTCSSCCCSTTCGG--GSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCC------------------CCceeecC---ccccCCCCcccccccCCCC--CeEeecCCHHHH
Confidence 999999999999999984 23544443 5999998888899999864 899999999999
Q ss_pred HHHhhhcccCCCCCcccCCCCCCccchHHHHHHhh-------------cCCCHHHHHHHHhcCChhhHHHHHHHHHHHhh
Q 014899 302 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------SGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 368 (416)
Q Consensus 302 ~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~-------------s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L 368 (416)
++|||+|+||+. +++ |+++.|+.++ +++++++++++|.+++|++||++||++|+++|
T Consensus 252 ~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~la~~l~~~l 321 (348)
T 2j5b_A 252 SEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTII 321 (348)
T ss_dssp HHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHHHHHHHHHH
Confidence 999999999873 356 7788887653 46789999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 014899 369 HPIQVRYEEI 378 (416)
Q Consensus 369 ~pirer~~~~ 378 (416)
+|||++|++.
T Consensus 322 ~pir~~~~~~ 331 (348)
T 2j5b_A 322 DLVREHFKKP 331 (348)
T ss_dssp HHHHHHTTSG
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 15
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=2.5e-67 Score=531.99 Aligned_cols=269 Identities=21% Similarity=0.286 Sum_probs=236.6
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
+++++|+||+|||.+|||| ++++.+|++||++ ++++|+||||||++++ .+++.+++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 3689999999999999999 7889999999997 8999999999999985 699999999999999999999999999
Q ss_pred EEEEcCCchhhhhHHHH----HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHH
Q 014899 150 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 225 (416)
Q Consensus 150 ~if~QS~v~e~~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~ 225 (416)
+||+||+|++| +++|. ++|.+++++|.|+.+|+++.. +..++++|+|+||+||||||++|++|+||||.||+|
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67887 999999999999999997643 224588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCC---------------CCCccccCCCCCCC
Q 014899 226 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 290 (416)
Q Consensus 226 hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~d---------------g~~KMSKS~p~~~s 290 (416)
|++++||+|+||| +++|..+.. ++||||++ |++|||||++ +|
T Consensus 190 ~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 9999999999988 356777664 59999964 3689999986 48
Q ss_pred ceecCCCHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhc---------------------CCCHHHHHHHHh
Q 014899 291 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKTKGEVAEECQ 349 (416)
Q Consensus 291 ~I~L~D~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s---------------------~~~~eel~~~y~ 349 (416)
+|+|+|+|++|++|||+|+||+. +++.|+++.|+++|+ ++++++++++|.
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAK---------QVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTT---------CCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHhCcCCCC---------CCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHh
Confidence 99999999999999999999873 446688999998865 248999999998
Q ss_pred c--CChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014899 350 N--MNWGTFKPLLTDALIEHLHPIQVRYEEI 378 (416)
Q Consensus 350 ~--l~~~dlK~~Lae~I~~~L~pirer~~~~ 378 (416)
+ ++|++||++||+.|+++|+|+|++|++.
T Consensus 318 ~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 318 DGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 8999999999999999999999999854
No 16
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.7e-68 Score=550.37 Aligned_cols=301 Identities=16% Similarity=0.230 Sum_probs=252.6
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-CcEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHHcCccCC
Q 014899 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ~-~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GlDp~ 147 (416)
+++++|+||+|| |.+|||||++++ .+| ||+ . +.++|+|||+||++.+ .+++.+++++.+++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 368999999999 899999999977 567 898 3 6799999999998873 4899999999999999999999999
Q ss_pred CeEEEEcCCch--hhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhh-----------cc
Q 014899 148 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 213 (416)
Q Consensus 148 k~~if~QS~v~--e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~~ 213 (416)
|++||+||+|+ .+.++.|. ++||++++++.++.+ .+++++|+|+||+||||||++ |+
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 67777773 678999998877654 467899999999999999999 67
Q ss_pred cceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014899 214 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 293 (416)
Q Consensus 214 adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 293 (416)
+++||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||.++ ++|+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~n--saI~ 306 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDDT--TAIF 306 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CGG--GCCB
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCCC--CeEe
Confidence 9999999999999999999999988 567887654 5999996545799999863 6999
Q ss_pred cCCCHHHHHHHhhh-cccCCCCCcccCC--CCCCccchHHHHHHhhc--CCCHHHHHHHHhc--CChhhHHHHHHHHHHH
Q 014899 294 LLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIE 366 (416)
Q Consensus 294 L~D~~e~I~kKI~k-A~Td~~~~~~~~~--~~rp~v~~ll~i~~~~s--~~~~eel~~~y~~--l~~~dlK~~Lae~I~~ 366 (416)
|+|+|++|++||++ |+||+..+.++++ +++|++++++.|+++|+ ++++++|+++|.+ ++++++|+.||+.|++
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~ 386 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQE 386 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 9999875544333 38899999999999884 4578889999973 8999999999999999
Q ss_pred hhhHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014899 367 HLHPIQVRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 408 (416)
Q Consensus 367 ~L~pirer~~~~~~d----~~~l~~iL~~Ga~kAr~iA~~tl~~Vr 408 (416)
+|+|+|+||++++++ +.++++++.+|++|||++|.+||++|+
T Consensus 387 ~l~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 387 FVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999988 788999999999999999999999985
No 17
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=2.7e-66 Score=529.29 Aligned_cols=274 Identities=18% Similarity=0.210 Sum_probs=242.4
Q ss_pred CCceEEEecCCCC-cchhhhHHHH-HHHHHHHhhc--CcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccCCC
Q 014899 74 VKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 74 ~~~~i~sGi~PTG-~lHLGnylg~-i~~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
++++||||++||| .+|||||+|+ +.+| ||++ +.++|+|||+||+++ +.+++++++++++++++|+|+|+||+|
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 177 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKL 177 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 4789999999998 7999999998 4788 9997 567889999999875 679999999999999999999999999
Q ss_pred eEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhh--------hcccceeec
Q 014899 149 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVPV 219 (416)
Q Consensus 149 ~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~adivpv 219 (416)
+.||.||+|++ .+..++++|+|+++|+++.+..+ .+++++|+|+||+|||||++ .+++|+|||
T Consensus 178 ~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvpv 249 (406)
T 3tze_A 178 TYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPA 249 (406)
T ss_dssp EEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEEE
T ss_pred eEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEee
Confidence 99999999986 34557789999999999988766 46789999999999999955 467999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC-CccccCCCCCCCceecCCCH
Q 014899 220 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDPK 298 (416)
Q Consensus 220 G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~-~KMSKS~p~~~s~I~L~D~~ 298 (416)
|.||+||+++|||+|+||| +++|..+.. ++|||| +|. +|||||+| +|+|+|+|+|
T Consensus 250 G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~p 305 (406)
T 3tze_A 250 AVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDAQ 305 (406)
T ss_dssp EGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCCH
T ss_pred ccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCCH
Confidence 9999999999999999988 578888754 599999 554 69999987 4999999999
Q ss_pred HHHHHHhhh-cccCCCCCccc--CCCCCCccchHHHHHHhhc--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHH
Q 014899 299 DVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPI 371 (416)
Q Consensus 299 e~I~kKI~k-A~Td~~~~~~~--~~~~rp~v~~ll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pi 371 (416)
++|++|||+ |+||+..++++ +++++|++||+++||++|+ ++++++++++|+ +++|++||+.|+++|+++|+||
T Consensus 306 ~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pi 385 (406)
T 3tze_A 306 DTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRY 385 (406)
T ss_dssp HHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999888766 3479999999999999996 457999999996 5899999999999999999999
Q ss_pred HHHHHHHhcC
Q 014899 372 QVRYEEIMSD 381 (416)
Q Consensus 372 rer~~~~~~d 381 (416)
|+||+++++|
T Consensus 386 rer~~~~~~d 395 (406)
T 3tze_A 386 QESRKRVTDD 395 (406)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHHhh
Confidence 9999999754
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.6e-65 Score=550.96 Aligned_cols=291 Identities=21% Similarity=0.314 Sum_probs=249.4
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
++++|||||+|||.+||||++....+|++||+. ++++|+||||||++++ .+++++++++.+++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 368999999999999999955433368899997 7999999999999973 588999999999999999999999999
Q ss_pred EEEEcCC-chhhhhHHHHHh----hcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchH
Q 014899 150 SVFVQSH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 224 (416)
Q Consensus 150 ~if~QS~-v~e~~el~w~L~----~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 224 (416)
+||+||+ +++|++++|.+. ..++++|+.|+.+++.+. . +++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~--~--~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT--E--GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc--c--CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 9999999 689999999874 479999999999998643 2 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014899 225 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304 (416)
Q Consensus 225 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kK 304 (416)
||+++|||+|+|||+.|+ |..+.. ++||||+||++|||||++ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996442 444433 599999889889999986 3899999999999999
Q ss_pred hhhcccCCCCC--cccCCCCC----CccchHHHHHHhh--------------cCCCHHHHHHHHh--cCChhhHHHHHHH
Q 014899 305 IKRCKTDSSAG--LEFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 362 (416)
Q Consensus 305 I~kA~Td~~~~--~~~~~~~r----p~v~~ll~i~~~~--------------s~~~~eel~~~y~--~l~~~dlK~~Lae 362 (416)
||+|+||+... .+...++. +++|++++|+.++ +++++++++++|+ +++|++||+.|++
T Consensus 253 I~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae 332 (690)
T 3p0j_A 253 IRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLID 332 (690)
T ss_dssp HHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999998652 11222333 5899999999986 3468999999997 4899999999999
Q ss_pred HHHHhhhHHHHHHHHHhcCHHHHHHHHH
Q 014899 363 ALIEHLHPIQVRYEEIMSDSAYLDKVLA 390 (416)
Q Consensus 363 ~I~~~L~pirer~~~~~~d~~~l~~iL~ 390 (416)
+|+++|+|||+||+++.++++++++|+.
T Consensus 333 ~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 333 EVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999998876
No 19
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1.3e-65 Score=521.54 Aligned_cols=279 Identities=16% Similarity=0.212 Sum_probs=245.2
Q ss_pred CCceEEEecCCCCcchhhhHHHH-HHHHHHHhhc--CcEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCccCCCe
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~-i~~~~~lQ~~--~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
++++|||||+|||.+|||||+|+ +.+| ||++ +.++|+|+|+||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 81 ~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt 158 (386)
T 3hzr_A 81 KPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKT 158 (386)
T ss_dssp CCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred CCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 47899999999999999999999 5888 9996 5678889999999985 699999999999999999999999999
Q ss_pred EEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhh--------hcc-cceeec
Q 014899 150 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVPV 219 (416)
Q Consensus 150 ~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl--------~~~-adivpv 219 (416)
.||+||+|++ .|..++++|+|+++|+++.+..+ .+++++|+|+||+||||||+ .++ +|+|||
T Consensus 159 ~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vpv 230 (386)
T 3hzr_A 159 FIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLD 230 (386)
T ss_dssp EEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEE
T ss_pred EEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCcccccc
Confidence 9999999986 55678899999999999987766 46799999999999999776 456 999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHH
Q 014899 220 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 299 (416)
Q Consensus 220 G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e 299 (416)
|.||+||+++|||+|+||| +++|..+.. ++|||| +|.+|||||++ +|+|+|+|+|+
T Consensus 231 G~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p~ 286 (386)
T 3hzr_A 231 SIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNAK 286 (386)
T ss_dssp EGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCHH
T ss_pred ccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCHH
Confidence 9999999999999999998 467855533 699999 55469999986 59999999999
Q ss_pred HHHHHhhh-cccCCCCCccc--CCCCCCccchHHHHHHhhc--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHH
Q 014899 300 VIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQ 372 (416)
Q Consensus 300 ~I~kKI~k-A~Td~~~~~~~--~~~~rp~v~~ll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pir 372 (416)
+|++|||+ |+||++.+.+. ..+++|+++++++||.+++ ++++++++++|+ +++|++||+.|+++|+++|+|||
T Consensus 287 ~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pir 366 (386)
T 3hzr_A 287 QVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYD 366 (386)
T ss_dssp HHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99998765322 3468899999999999985 457899999997 58999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHH
Q 014899 373 VRYEEIMSDSAYLDKV 388 (416)
Q Consensus 373 er~~~~~~d~~~l~~i 388 (416)
+||+++.+| .|++.
T Consensus 367 er~~~~~~~--~~~~~ 380 (386)
T 3hzr_A 367 AKKKPITTA--YLKAY 380 (386)
T ss_dssp HHHTTCCHH--HHHHH
T ss_pred HHHHHHHHH--HHHHH
Confidence 999998753 45544
No 20
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.7e-64 Score=514.72 Aligned_cols=282 Identities=20% Similarity=0.267 Sum_probs=235.6
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhc--CcEEEEEeCcceecC--CCCHHHHHHHHHHHHHHHHHcCccCC
Q 014899 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~--~~~~~~i~~~~~~~~a~~lA~GlDp~ 147 (416)
+++++|+|++|| |.+|||||++++ .+| ||++ +.++|+|||+|+++. ..+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 368999999999 689999999988 778 9997 367999999999665 46999999999999999999999999
Q ss_pred CeEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhh-------hc-c---cc
Q 014899 148 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------LY-Q---SD 215 (416)
Q Consensus 148 k~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl-------~~-~---ad 215 (416)
|+.||.||+|++. +..++.++.|+.+++++.+..+ .+++++|+|+||+||||||+ ++ + ++
T Consensus 151 kt~i~~ns~~~~~--------~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~ 222 (393)
T 3hv0_A 151 LTFIFTNLEYIAE--------LYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHC 222 (393)
T ss_dssp TEEEEEHHHHHHH--------HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCE
T ss_pred ceEEEECCHHHHH--------HHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCce
Confidence 9999999999751 2345668899999999887765 46899999999999999996 33 3 47
Q ss_pred eeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014899 216 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 295 (416)
Q Consensus 216 ivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 295 (416)
+||||.||++|+++|||+|+||| +++|..+.. ++||||+++++|||||.+ +|+|+|+
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--nsaI~L~ 279 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQ--NSSIFVN 279 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC---------------CCCCBTT
T ss_pred ecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCC--CCeEecc
Confidence 89999999999999999999987 577887764 599999544479999997 3799999
Q ss_pred CCHHHHHHHhhh-cccCCCCCcccCC--CCCCccchHHHHHHhh--cCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhh
Q 014899 296 DPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHL 368 (416)
Q Consensus 296 D~~e~I~kKI~k-A~Td~~~~~~~~~--~~rp~v~~ll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L 368 (416)
|+|++|++|||+ |+||+..++++++ +++|++|++++||+++ +++++++++++|+ +++|++||+.|+++|+++|
T Consensus 280 D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l 359 (393)
T 3hv0_A 280 DNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLT 359 (393)
T ss_dssp CCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 9999988887764 6999999999999998 4568999999997 6899999999999999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHH
Q 014899 369 HPIQVRYEEIMSDSAYLDKVLA 390 (416)
Q Consensus 369 ~pirer~~~~~~d~~~l~~iL~ 390 (416)
+|+|+||+++++| .|++++.
T Consensus 360 ~pirer~~~~~~d--~~~~~~~ 379 (393)
T 3hv0_A 360 KNHQKNREAINDD--VIAKFTN 379 (393)
T ss_dssp HHHHHHHHTCCHH--HHHHHHC
T ss_pred HHHHHHHHHHHHh--HHHHHhC
Confidence 9999999999865 4777663
No 21
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=5.5e-65 Score=518.65 Aligned_cols=287 Identities=18% Similarity=0.227 Sum_probs=220.2
Q ss_pred CCceEEEecCCCC-cchhhhHHHHH-HHHHHHhhc--CcEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCccCCC
Q 014899 74 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 74 ~~~~i~sGi~PTG-~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
+++++|+|++||| .+|||||+|++ .+| ||++ +.++|+|+|+|++++ +.+++++++++++++++|+|+||||+|
T Consensus 77 ~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 154 (395)
T 3i05_A 77 QPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPEL 154 (395)
T ss_dssp CCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTS
T ss_pred CCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4789999999999 69999999984 778 9996 467888999987765 679999999999999999999999999
Q ss_pred eEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHH--------hhhhcc----cc
Q 014899 149 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----SD 215 (416)
Q Consensus 149 ~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAA--------DIl~~~----ad 215 (416)
+.||.||+|++ .|+ ..+++|.|+++|+++.+..+ .+++++|+|+||+|||| ||++++ +|
T Consensus 155 t~i~~ns~~~~----~~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~ 226 (395)
T 3i05_A 155 TFIFRDFDYMG----CMY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFC 226 (395)
T ss_dssp EEEEEHHHHTT----TSH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEE
T ss_pred eEEEEcCHHHH----HHH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCce
Confidence 99999999975 222 45778999999999888765 46799999999999999 677898 99
Q ss_pred eeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014899 216 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 295 (416)
Q Consensus 216 ivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 295 (416)
+||||.||+||++++||+|+||| +++|..+.. ++||||+++++||||| + +|+|+|+
T Consensus 227 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L~ 282 (395)
T 3i05_A 227 LIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLLT 282 (395)
T ss_dssp EEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC----------------CCBTT
T ss_pred EEEeccchHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C--CCcccCC
Confidence 99999999999999999999988 457777654 5999995444799999 4 6999999
Q ss_pred CCHHHHHHHhhh-cccCCCCCccc--CCCCCCccchHHHHHHhh--cCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhh
Q 014899 296 DPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHL 368 (416)
Q Consensus 296 D~~e~I~kKI~k-A~Td~~~~~~~--~~~~rp~v~~ll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L 368 (416)
|+|++|++|||+ |+||+..++++ +++++|++|++++||++| +++++++++++|+ +++|++||+.|+++|+++|
T Consensus 283 D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l 362 (395)
T 3i05_A 283 DTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAIT 362 (395)
T ss_dssp CCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 99999877654 567999999999999999 4668999999997 4899999999999999999
Q ss_pred hHHHHHHHHHhcCHHHHHHHHH----HHHHHH
Q 014899 369 HPIQVRYEEIMSDSAYLDKVLA----DGAAKA 396 (416)
Q Consensus 369 ~pirer~~~~~~d~~~l~~iL~----~Ga~kA 396 (416)
+|||+||+++.+| .|++.+. .||+||
T Consensus 363 ~pirer~~~~~~d--~~~~~~~~~~~~~~~~~ 392 (395)
T 3i05_A 363 KTHQEKRKLVTDE--DVQLFTSTRIMGPAKKA 392 (395)
T ss_dssp HHHHHHHTTCCHH--HHHHHHSCCCCTTTTC-
T ss_pred HHHHHHHHHHHHh--HHHHHhChhcccchhhh
Confidence 9999999998864 5666664 666665
No 22
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.5e-63 Score=495.59 Aligned_cols=265 Identities=24% Similarity=0.332 Sum_probs=236.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
++++||+||+|||.+||||+ +++.+|++||+. ++++|+||||||++++. +++++++++++++++|+|+|+||+|+.|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 36799999999999999985 678999999996 89999999999999865 9999999999999999999999999999
Q ss_pred EEcCCch---hhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHHH
Q 014899 152 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 228 (416)
Q Consensus 152 f~QS~v~---e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hle 228 (416)
|+||+|+ +|.++.|.++|.++++++.|+.+++.+ .. +..++|+|+||+||||||+++++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--RK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--CS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--cc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 9999995 889999999999999999998776532 11 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhc
Q 014899 229 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308 (416)
Q Consensus 229 LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA 308 (416)
++|++|++|| +++|..+.. ++||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~------------------~~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLG------------------YSSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGT------------------CCCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcC------------------CCCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 9999999988 346766665 499999 56 799999 3 58999999999999999999
Q ss_pred ccCCCCCcccCCCCCCccchHHHHHHhhc--------------------CCCHHHHHHHHhc--CChhhHHHHHHHHHHH
Q 014899 309 KTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQN--MNWGTFKPLLTDALIE 366 (416)
Q Consensus 309 ~Td~~~~~~~~~~~rp~v~~ll~i~~~~s--------------------~~~~eel~~~y~~--l~~~dlK~~Lae~I~~ 366 (416)
+||+. .++.|++++|++++. ++++++++++|++ ++|++||++|+++|++
T Consensus 240 ~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~ 310 (323)
T 2cyb_A 240 YCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNM 310 (323)
T ss_dssp CCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99873 445689999999873 4589999999984 8999999999999999
Q ss_pred hhhHHHHHHHHH
Q 014899 367 HLHPIQVRYEEI 378 (416)
Q Consensus 367 ~L~pirer~~~~ 378 (416)
+|+|||++|++.
T Consensus 311 ~l~pir~~~~~~ 322 (323)
T 2cyb_A 311 LLEDARKRLGVS 322 (323)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 999999999753
No 23
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.7e-64 Score=517.96 Aligned_cols=280 Identities=21% Similarity=0.280 Sum_probs=243.6
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhc--CcEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHHcCccCC
Q 014899 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GlDp~ 147 (416)
+++++|+||+|| |.+|||||++++ .+| ||++ +.++|+|+|+||++++ .+++++++++++++++|+|+||||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999 889999999988 778 9997 4678899999999864 5999999999999999999999999
Q ss_pred CeEEEEcCCchh---hhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc------------
Q 014899 148 KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY------------ 212 (416)
Q Consensus 148 k~~if~QS~v~e---~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~------------ 212 (416)
+++||+||+|++ +.++.|.+++.++++++.+...|+ +++++|+|+||+||||||+..
T Consensus 168 kt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~ 239 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBC
T ss_pred ceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCcccccc
Confidence 999999999965 667777788888888777665442 578999999999999999833
Q ss_pred ------------------------------ccc-----------------eeecccchHHHHHHHHHHHHHHhhhhCCcc
Q 014899 213 ------------------------------QSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRK 245 (416)
Q Consensus 213 ------------------------------~ad-----------------ivpvG~DQ~~hleLaRdiA~r~n~~yg~~~ 245 (416)
++| +||||.||+||+|+|||||++||
T Consensus 240 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------- 312 (451)
T 3foc_A 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------- 312 (451)
T ss_dssp C-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT-------
T ss_pred ccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC-------
Confidence 334 99999999999999999999988
Q ss_pred ccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh-cccCCCCCccc--CCCC
Q 014899 246 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLE 322 (416)
Q Consensus 246 ~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~k-A~Td~~~~~~~--~~~~ 322 (416)
+++|..+.. ++||||+++++|||||+++ |+|+|+|+|++|++|||+ |+||+..++++ .+++
T Consensus 313 -----------~~~p~~~~~---~~l~gLdG~~~KMSKS~~n--s~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~g 376 (451)
T 3foc_A 313 -----------HPKNAYLLG---KFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGA 376 (451)
T ss_dssp -----------SCCCEEEEE---CCCCBTTBTTCCCCTTCGG--GSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTCC
T ss_pred -----------CCCCeeecC---CcccCCCCCCCccCCCCCC--CeeeecCCHHHHHHHHhhhccCCCCccchhcccCCC
Confidence 467776654 5999996555799999973 799999999999999999 99999877654 5679
Q ss_pred CCccchHHHHHHhhc--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHH
Q 014899 323 RPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 388 (416)
Q Consensus 323 rp~v~~ll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~i 388 (416)
+|++|+++.||.+|+ ++++++++++|+ +++|++||+.|++.|+++|+|||+||+++++ +.|++.
T Consensus 377 ~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~--d~v~~f 444 (451)
T 3foc_A 377 DLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT--TMIESF 444 (451)
T ss_dssp CTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHH
T ss_pred CcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 999999999999994 557899999997 5899999999999999999999999999875 345554
No 24
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=9.1e-62 Score=482.60 Aligned_cols=257 Identities=25% Similarity=0.315 Sum_probs=227.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCccCCCeEE
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 151 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~i 151 (416)
++++||+||+|||.+|||| ++++.+|++||+. ++++|+|||+||++++. +++++++++.+++++|+|+|+| +.|
T Consensus 27 ~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~ 102 (314)
T 2zp1_A 27 DEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKY 102 (314)
T ss_dssp SSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEE
T ss_pred CCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEE
Confidence 3689999999999999999 7889999999997 89999999999999854 8999999999999999999998 889
Q ss_pred EEcCCchhhhhHHHH----HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchHHHH
Q 014899 152 FVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 227 (416)
Q Consensus 152 f~QS~v~e~~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~~hl 227 (416)
++||+|+++ +++|. ++|.+++++|.|+.+|+++. . +..++|+|+||+||||||++|++|+||||.||++|+
T Consensus 103 ~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~ 177 (314)
T 2zp1_A 103 VYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH 177 (314)
T ss_dssp EEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred EECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence 999999765 45555 99999999999999998643 2 234999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh
Q 014899 228 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 307 (416)
Q Consensus 228 eLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~k 307 (416)
+|+|++++ ++|..+.. ++|||| +|++||||| + +|+|+|+|+|++|++|||+
T Consensus 178 ~l~R~i~~----------------------~~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~~ 228 (314)
T 2zp1_A 178 MLARELLP----------------------KKVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIKK 228 (314)
T ss_dssp HHHHHHSS----------------------SCCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHHH
T ss_pred HHHHHhcC----------------------CCcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHHh
Confidence 99999863 24555443 599999 487899999 4 5899999999999999999
Q ss_pred cccCCCCCcccCCCCCCccchHHHHHHhh-----------------cCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhh
Q 014899 308 CKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHL 368 (416)
Q Consensus 308 A~Td~~~~~~~~~~~rp~v~~ll~i~~~~-----------------s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L 368 (416)
|+||+. .++.|++++||+++ ++++++|++++|+ +++|++||+.||+.|+++|
T Consensus 229 a~td~~---------~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l 299 (314)
T 2zp1_A 229 AYCPAG---------VVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKIL 299 (314)
T ss_dssp SCCCTT---------CCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---------CCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999874 34568999999987 3458999999997 4799999999999999999
Q ss_pred hHHHHHHHH
Q 014899 369 HPIQVRYEE 377 (416)
Q Consensus 369 ~pirer~~~ 377 (416)
+|+|++|+.
T Consensus 300 ~p~r~~~~~ 308 (314)
T 2zp1_A 300 EPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 999999974
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.1e-62 Score=503.44 Aligned_cols=280 Identities=19% Similarity=0.279 Sum_probs=242.5
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-CcEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCccCCC
Q 014899 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ~-~-~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
+++++|+||+|| |.+|||||++++ .+| ||+ . +.++|+|||+||++++ .+++++++++.+++++|+|+|+||+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 468999999999 899999999987 677 888 3 7899999999999985 68999999999999999999999999
Q ss_pred eEEEEcCCchh----hhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhh-----------c
Q 014899 149 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 212 (416)
Q Consensus 149 ~~if~QS~v~e----~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~ 212 (416)
++||.||+|++ +.++.| +++||++++++.++.+ .+++++|+|+||+||||||++ |
T Consensus 185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 255 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 255 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence 99999999975 444443 5778889888877654 467899999999999999999 7
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
++|+||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||++ +++|
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~--nsaI 312 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSI 312 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSS--SSCC
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCC--CCee
Confidence 88999999999999999999999987 567887654 599999543479999996 3699
Q ss_pred ecCCCHHHHHHHhhh-cccCCCCCcccCC--CCCCccchHHHHHHhhc--CCCHHHHHHHHhc--CChhhHHHHHHHHHH
Q 014899 293 NLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALI 365 (416)
Q Consensus 293 ~L~D~~e~I~kKI~k-A~Td~~~~~~~~~--~~rp~v~~ll~i~~~~s--~~~~eel~~~y~~--l~~~dlK~~Lae~I~ 365 (416)
+|+|+|++|++|||+ |+||+..++++++ +++|++++++.|+++|+ ++++++|+++|.+ ++++++|+.||+.|+
T Consensus 313 ~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~ 392 (437)
T 1r6u_A 313 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 392 (437)
T ss_dssp BTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred eccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 9999976555433 38899999999999885 4478889999973 899999999999999
Q ss_pred HhhhHHHHHHHHHhcCHHHHHHHH
Q 014899 366 EHLHPIQVRYEEIMSDSAYLDKVL 389 (416)
Q Consensus 366 ~~L~pirer~~~~~~d~~~l~~iL 389 (416)
++|+|+|+||+++.++ .+++.+
T Consensus 393 ~~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 393 PLIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp HHHHHHHHHHHTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHH--HHHHhc
Confidence 9999999999998753 355543
No 26
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-61 Score=489.03 Aligned_cols=279 Identities=23% Similarity=0.230 Sum_probs=228.4
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecC-CC-CHHHHHHHH----HHHHHHHHHcCccCC
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~-~~~~i~~~~----~~~~a~~lA~GlDp~ 147 (416)
++++||+||+|||.+|||||+++++.|..+|..++++|+|+||||+|+ +. .++.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 457999999999999999999999999888877999999999999997 33 556666654 345557899999999
Q ss_pred CeEEEEcCCc---hhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchH
Q 014899 148 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 224 (416)
Q Consensus 148 k~~if~QS~v---~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 224 (416)
++.||+||+| ++|.++.|.++|.++++++.|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999998 57889999999999999999886532 12 1 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014899 225 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304 (416)
Q Consensus 225 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kK 304 (416)
+|++++|+++++|| +++|..++.+ +||+| +|.+|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMNP---MVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecc---cccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999987 4578887764 99999 53379999996 3679999999999999
Q ss_pred hhhcccCCCCCcccCCCCCCccchHHHHHHh----------------------------hcCCCHHHHHHHHhc--CChh
Q 014899 305 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL----------------------------ISGKTKGEVAEECQN--MNWG 354 (416)
Q Consensus 305 I~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~----------------------------~s~~~~eel~~~y~~--l~~~ 354 (416)
||+|+||+. +++.|+++.|+++ ++++++++++++|.+ ++|+
T Consensus 250 I~ka~Td~~---------~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~ 320 (394)
T 2dlc_X 250 INSAFCSPG---------NVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPP 320 (394)
T ss_dssp HHHSCCCTT---------CCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCHH
T ss_pred HHHhcCCCC---------CCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcCCCCHH
Confidence 999999873 3445667776543 355799999999984 8999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHH
Q 014899 355 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 393 (416)
Q Consensus 355 dlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga 393 (416)
+||+.||++|+++|+|+|++|++ +++ ++++++.|.
T Consensus 321 ~~K~~La~~i~~~l~p~r~~~~~---~~~-~~~~~~~~~ 355 (394)
T 2dlc_X 321 DLKIGVADAINELLEPIRQEFAN---NKE-FQEASEKGY 355 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---CHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHC---CHH-HHHHHhccC
Confidence 99999999999999999999873 443 777776553
No 27
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.9e-61 Score=503.35 Aligned_cols=280 Identities=19% Similarity=0.279 Sum_probs=240.7
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-CcEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCccCCC
Q 014899 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 148 (416)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylg~i-~~~~~lQ~-~-~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k 148 (416)
+++++|+||+|| |.+|||||+|++ .+| ||+ . +.++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 468999999999 899999999987 678 897 3 7899999999999974 68999999999999999999999999
Q ss_pred eEEEEcCCchh----hhhHHHHHhhcccHHHHhhhhhHHHHhHhhC-CCCccchhhhhhHHHHHhhhh-----------c
Q 014899 149 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 212 (416)
Q Consensus 149 ~~if~QS~v~e----~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~-~~~~~~g~l~YPvLQAADIl~-----------~ 212 (416)
++||.||+|++ +.++.| +|+|+++++++.++.+ .+++++|+|+||+||||||++ |
T Consensus 232 ~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 302 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 302 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccC
Confidence 99999999975 555554 6667788887766554 467899999999999999999 5
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
++|+||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||.++ ++|
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS~~n--saI 359 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDPN--SSI 359 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSTT--CCC
T ss_pred CceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCCCCC--Cce
Confidence 88999999999999999999999987 567887654 5999995434799999963 699
Q ss_pred ecCCCHHHHHHHhhh-cccCCCCCcccCC--CCCCccchHHHHHHhhc--CCCHHHHHHHHhc--CChhhHHHHHHHHHH
Q 014899 293 NLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALI 365 (416)
Q Consensus 293 ~L~D~~e~I~kKI~k-A~Td~~~~~~~~~--~~rp~v~~ll~i~~~~s--~~~~eel~~~y~~--l~~~dlK~~Lae~I~ 365 (416)
+|+|+|++|++|||+ |+||+..++++++ +++|++++++.|+++|+ ++++++|+++|.+ ++++++|+.||+.|+
T Consensus 360 ~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~ 439 (477)
T 1r6t_A 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 439 (477)
T ss_dssp BTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 9999976554433 38899999999999885 4478889999973 899999999999999
Q ss_pred HhhhHHHHHHHHHhcCHHHHHHHH
Q 014899 366 EHLHPIQVRYEEIMSDSAYLDKVL 389 (416)
Q Consensus 366 ~~L~pirer~~~~~~d~~~l~~iL 389 (416)
++|+|||+||+++.++ .|++.+
T Consensus 440 ~~l~pirer~~~~~~~--~v~~~~ 461 (477)
T 1r6t_A 440 PLIAEHQARRKEVTDE--IVKEFM 461 (477)
T ss_dssp HHHHHHHHHHTTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHh
Confidence 9999999999998753 355443
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=3.6e-60 Score=480.92 Aligned_cols=265 Identities=23% Similarity=0.216 Sum_probs=220.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecC-CCCHHHHHHHHH---H--HHHHHHHcCccCC
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 147 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~---~--~~a~~lA~GlDp~ 147 (416)
++++||+||+|||.+|||||+|+++.|..+|..++++|+||||||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999888767766899999999999997 566666644443 2 3345799999999
Q ss_pred CeEEEEcCCch---hhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccceeecccchH
Q 014899 148 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 224 (416)
Q Consensus 148 k~~if~QS~v~---e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adivpvG~DQ~ 224 (416)
++.||+||+|+ ++.++.|.++|.+++++++|+.+. ..+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~--v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAE--VVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTT--TSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhh--hhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 788999999999999999886331 011 1 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014899 225 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304 (416)
Q Consensus 225 ~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kK 304 (416)
+|++++|+++++|+ +.+|..+.. ++||+| +| +|||||+++ ++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~n--s~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEEE--SKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C-------C--CSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCCC--CeEeccCCHHHHHHH
Confidence 99999999999975 567888775 499999 57 699999973 699999999999999
Q ss_pred hhhcccCCCCCcccCCCCCCccchHHHHHHh--------h------------cCCCHHHHHHHHhc--CChhhHHHHHHH
Q 014899 305 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQN--MNWGTFKPLLTD 362 (416)
Q Consensus 305 I~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~--------~------------s~~~~eel~~~y~~--l~~~dlK~~Lae 362 (416)
||+|+||+. +++.|+++.|+++ | +++++++++++|.+ ++|++||+.||+
T Consensus 245 i~~A~td~~---------~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~ 315 (372)
T 1n3l_A 245 LKKAFCEPG---------NVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEV 315 (372)
T ss_dssp HHTCCCCTT---------CCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHccCCCC---------CCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999874 3455788888875 3 45699999999984 899999999999
Q ss_pred HHHHhhhHHHHHHH
Q 014899 363 ALIEHLHPIQVRYE 376 (416)
Q Consensus 363 ~I~~~L~pirer~~ 376 (416)
.|+++|+|+|++|+
T Consensus 316 ~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 316 ALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhc
Confidence 99999999999997
No 29
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=2e-60 Score=490.24 Aligned_cols=286 Identities=19% Similarity=0.220 Sum_probs=241.4
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 141 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 141 (416)
+++++|+||+|||. +|||||++ +.+|++||++ ++++|+||||||+++ | .+++++++|+.++.+.+.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~- 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG- 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT-
T ss_pred CCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-
Confidence 46899999999996 99999995 8899999997 899999999999997 3 246788888877666553
Q ss_pred cCcc--CCCeEEEEcCCchhhhhHHHHH--hhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhccccee
Q 014899 142 CGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 217 (416)
Q Consensus 142 ~GlD--p~k~~if~QS~v~e~~el~w~L--~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adiv 217 (416)
+||| |+|++||+||+|.++..+.|++ ++.++++++.+..+||++... .+++++|+|+||+||||||++|++|+|
T Consensus 114 ~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l~ 191 (432)
T 1h3f_A 114 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE 191 (432)
T ss_dssp TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccEE
Confidence 8999 9999999999998887777776 889999998888899977643 267899999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCC
Q 014899 218 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 297 (416)
Q Consensus 218 pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~ 297 (416)
|||.||++|++++||+|+|||. ..|..+.. ++||++ ||++|||||.+ |+|+|+|+
T Consensus 192 ~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~ds 246 (432)
T 1h3f_A 192 MGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTEP 246 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTSC
T ss_pred EechHHHHHHHHHHHHHHHhCC------------------CCceEeec---ccccCC-CCccccCcCCC---CeeCCCCC
Confidence 9999999999999999999872 22333432 599999 78779999984 69999999
Q ss_pred HHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhh----HHHH
Q 014899 298 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH----PIQV 373 (416)
Q Consensus 298 ~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~----pire 373 (416)
|++|++||+++.+ ++++.|+++|++.+++|+++.+.+ +|+++|+.||+.|+++++ |||+
T Consensus 247 p~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l~~~~~pire 309 (432)
T 1h3f_A 247 PEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAYALPQIPPRI 309 (432)
T ss_dssp HHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSSCCSCC
T ss_pred HHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHHhcccchHHH
Confidence 9999999999853 478999999999999999998887 999999999999999999 9999
Q ss_pred HHHHHhcCHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014899 374 RYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 407 (416)
Q Consensus 374 r~~~~~~d~~~l~~iL~~----Ga~kAr~iA~~tl~~V 407 (416)
||+++++ ++||++||++ |.+.|++ |.+.-+.+
T Consensus 310 rr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 310 DRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp SHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred HHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 9999999 9999999999 9888764 55554444
No 30
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=2e-59 Score=467.20 Aligned_cols=262 Identities=14% Similarity=0.147 Sum_probs=226.2
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHH---HHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 138 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~---~~~~a~ 138 (416)
++++||+||+|||. +|||||++ +.+|++||+. ++++|+||||||+|+ |. +++++++++ +++++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 7899999997 899999999999997 42 899999999 888888
Q ss_pred HHHcCccCCCeEEEEcCCchh-hhhHHHH--HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc---
Q 014899 139 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 212 (416)
Q Consensus 139 ~lA~GlDp~k~~if~QS~v~e-~~el~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 212 (416)
|+|+|+||+|++||.||+|+. +.++.|+ +++.++++++.|+.++|++.... .+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhcc
Confidence 999999999999999999975 5888888 89999999999999999765421 2568999999999999999999
Q ss_pred -ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 213 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 213 -~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
++|+++||.||+||++++||+|+|||+ + .|..+.. ++|||+ || +|||||++ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHC--C----------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCC--C----------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 999999999999999999999999994 2 3334443 599999 67 69999985 69
Q ss_pred eecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHHHHHHHh
Q 014899 292 INLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 367 (416)
Q Consensus 292 I~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~~ 367 (416)
|+|+| +|+++++||+++. .+++.+++.+|.+++++++++++++|. +.+++++|+.||+.|+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~La~~i~~~ 310 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRL 310 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred eeccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999 9999999999862 123445555554455678899999997 469999999999999999
Q ss_pred hhHHHHHHH
Q 014899 368 LHPIQVRYE 376 (416)
Q Consensus 368 L~pirer~~ 376 (416)
|+|.++..+
T Consensus 311 l~~~~~~~~ 319 (322)
T 2yxn_A 311 VHGEEGLQA 319 (322)
T ss_dssp HHHHHHHHH
T ss_pred hCCHHHHHH
Confidence 999998765
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.7e-56 Score=451.29 Aligned_cols=260 Identities=17% Similarity=0.150 Sum_probs=210.3
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 141 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 141 (416)
++++||+||+|||. +||||++ ++++|++||+. ++++|+|||+||+|+ +. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 35899999999997 9999965 68899999997 899999999999997 32 699999999999999999
Q ss_pred cCccCCC-----------eEEEEcCCchhhhhHHHHHh---hcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHH
Q 014899 142 CGIDNSK-----------ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 207 (416)
Q Consensus 142 ~GlDp~k-----------~~if~QS~v~e~~el~w~L~---~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAA 207 (416)
+ +||++ +.||+||+|..+.++.|++. ..+++++|.+..+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 99855 99999999987777777765 47889999999998865432 25789999999999999
Q ss_pred hhhhc----ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014899 208 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 283 (416)
Q Consensus 208 DIl~~----~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSK 283 (416)
||++| ++|+||||.||+||++++||||+|||+ + +|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999993 2 2333333 489999 77 69999
Q ss_pred CCCCCCCceecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHH
Q 014899 284 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 359 (416)
Q Consensus 284 S~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~ 359 (416)
|. +|+|+|+| +|++|++||+++. | +++.+++.+|.+++++++++++++|+ +.+++++|+.
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~~-D------------~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~~K~~ 321 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQP-D------------DSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 321 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcCC-c------------hhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHHHHHH
Confidence 96 58999999 9999999999953 2 34566777766666778899999997 4789999999
Q ss_pred HHHHHHHhhhHHHHHHH
Q 014899 360 LTDALIEHLHPIQVRYE 376 (416)
Q Consensus 360 Lae~I~~~L~pirer~~ 376 (416)
||+.|+++|+..++..+
T Consensus 322 La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 322 LAAEVTKLVHGREGLDS 338 (356)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 99999999999876543
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=7.1e-56 Score=455.60 Aligned_cols=261 Identities=14% Similarity=0.141 Sum_probs=224.9
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-C--------CCHHHHHHHHHHH---HHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 139 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~--------~~~~~i~~~~~~~---~a~~ 139 (416)
+++++|+||+|||+ +||||++ ++.+|++||+. ++++|+|||+||+++ | .+++++++|+.++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999996 9999966 57899999997 899999999999997 5 6789999999766 6778
Q ss_pred HHcCccCCCeEEEEcCCchh-hhhHHHH--HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc----
Q 014899 140 LACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 212 (416)
Q Consensus 140 lA~GlDp~k~~if~QS~v~e-~~el~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~---- 212 (416)
+|+|+||+|++||+||+|++ +.++.|+ +++.+++++|.|+.+||++. . .+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999976 4688898 99999999999999999865 2 2678999999999999999999
Q ss_pred ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014899 213 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 292 (416)
Q Consensus 213 ~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 292 (416)
++|+||||.||++|++++||+|+|||+ .+|..+.. ++||++ || +|||||.++ ++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~---plL~~l-dG-~KMSKS~~n--saI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTV---PLVTAA-DG-TKFGKSTGG--GSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTBCSSS--CBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccc---ccccCC-Cc-CcCCCCCCC--CeE
Confidence 999999999999999999999999983 23334433 599999 77 699999863 599
Q ss_pred ecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHHHHHHHhh
Q 014899 293 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 368 (416)
Q Consensus 293 ~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L 368 (416)
+|+| +|+++++||+++. | +++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~ 308 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNTA-D------------ADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLV 308 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHhcCC-c------------hhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999952 2 34556666666666678899999997 5689999999999999999
Q ss_pred hHHHHHHH
Q 014899 369 HPIQVRYE 376 (416)
Q Consensus 369 ~pirer~~ 376 (416)
++..+..+
T Consensus 309 hg~~~~~~ 316 (432)
T 2jan_A 309 HGEAATAA 316 (432)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 99775443
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=2.7e-54 Score=439.93 Aligned_cols=274 Identities=18% Similarity=0.150 Sum_probs=225.9
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 141 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 141 (416)
+++++|+||+|||. +|||||++ +.+|++||++ ++++|+|||+||+|+ | .+++.+++|+.++.++++|
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 36799999999999 99999995 7899999997 899999999999997 4 2778999999999888888
Q ss_pred cC-----------cc---CCCeEEEEcCCc-hhhhhHHHH--HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHH
Q 014899 142 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 204 (416)
Q Consensus 142 ~G-----------lD---p~k~~if~QS~v-~e~~el~w~--L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvL 204 (416)
+| +| |+++.||.||+| +++.++.|+ +++.++++++.+..+||.+... .+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHHH
Confidence 65 45 789999999997 778899999 8889999987776688764322 35789999999999
Q ss_pred HHHhhhhc----ccceeecccchHHHHHHHHHHHHHHhhhhCC--c---cccccCCCCCccccCCceecCCCCcccccCC
Q 014899 205 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 275 (416)
Q Consensus 205 QAADIl~~----~adivpvG~DQ~~hleLaRdiA~r~n~~yg~--~---~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~ 275 (416)
|||||+++ ++|+||||.||++|++++||||+|||+.|+. + ..+++| +.+|..+.. ++||++
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 6999999999999999999999999987731 0 012222 344555543 599999
Q ss_pred CCCCccccCCCCCCCceecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cC
Q 014899 276 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NM 351 (416)
Q Consensus 276 dg~~KMSKS~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l 351 (416)
|| +|||||. +|+|+|+| +|+++++||+++. | +++.+++.+|.+++++++++++++|. +.
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~~-D------------~~v~~~l~~ft~l~~~ei~~l~~~~~~g~ 352 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRRS-D------------QEVENLLKLFTFMPISEITKTMEEHIKDP 352 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTCC-T------------TTHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcCC-c------------hhHHHHHHHHHhCChhHHHHHHHHHhcCC
Confidence 67 6999997 58999999 9999999999852 2 35667777777667778899999997 35
Q ss_pred ChhhHHHHHHHHHHHhhhHHHHHHHH
Q 014899 352 NWGTFKPLLTDALIEHLHPIQVRYEE 377 (416)
Q Consensus 352 ~~~dlK~~Lae~I~~~L~pirer~~~ 377 (416)
+++++|+.||+.|+++|++.++..+.
T Consensus 353 ~~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 353 SKRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp GGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 89999999999999999999876543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=2.7e-54 Score=442.91 Aligned_cols=263 Identities=14% Similarity=0.152 Sum_probs=215.1
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHHHHH---HHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 138 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~---~a~ 138 (416)
+++++|+||+|||. +|||||++ +.+|++||+. ++++++|||+||+++ |. +++++++|+..+ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 7899999997 899999999999997 42 899999999766 556
Q ss_pred HHHcCccCCCeEEEEcCCchhhhhHHHHHhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc----cc
Q 014899 139 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY----QS 214 (416)
Q Consensus 139 ~lA~GlDp~k~~if~QS~v~e~~el~w~L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~----~a 214 (416)
|+++|+||+|++||.||+|+.+..+.|.|.++.+...++||.++.+..++. .+++++|+|+||+||||||++| ++
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~-~~~is~~ef~YPlLQaaDil~l~~~~~~ 186 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI-ETGISFTEFSYMMLQAYDFLRLYETEGC 186 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTT-TTCCCHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhcc-CCCcchHHHHHHHHHHHHHHHHhccCCC
Confidence 789999999999999999988777777666554444444554444433333 3678999999999999999999 99
Q ss_pred ceeecccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014899 215 DFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 293 (416)
Q Consensus 215 divpvG~DQ~~hleLaRdiA~r~-n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 293 (416)
|+||||.||++|++++||+|+|| |. .+|..+.. ++||++ || +|||||. +|+|+
T Consensus 187 ~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~~lt~---pll~~l-dG-~KMSKS~---~naI~ 240 (419)
T 2ts1_A 187 RLQIGGSDQWGNITAGLELIRKTKGE------------------ARAFGLTI---PLVTKA-DG-TKFGKTE---SGTIW 240 (419)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SCCCB
T ss_pred cEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeeccc---ccccCC-Cc-ccccCCC---CCeEe
Confidence 99999999999999999999999 73 12333333 588998 77 6999997 47999
Q ss_pred cCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHHHHHHHhhh
Q 014899 294 LLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHLH 369 (416)
Q Consensus 294 L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L~ 369 (416)
|+| +|+++++||+++. | +++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|+++++
T Consensus 241 L~d~~tsp~~i~qki~~~~-D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~h 307 (419)
T 2ts1_A 241 LDKEKTSPYEFYQFWINTD-D------------RDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVH 307 (419)
T ss_dssp SSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhcCC-c------------hhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 999 9999999999952 1 23555566655556678889999997 56999999999999999999
Q ss_pred HHHHHHHH
Q 014899 370 PIQVRYEE 377 (416)
Q Consensus 370 pirer~~~ 377 (416)
+..+..+.
T Consensus 308 g~~~~~~a 315 (419)
T 2ts1_A 308 GEEALRQA 315 (419)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98765543
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.2e-53 Score=438.79 Aligned_cols=258 Identities=14% Similarity=0.138 Sum_probs=223.4
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 014899 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 141 (416)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 141 (416)
+++++|+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+++ |. +++++++|+.++.+++++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999995 7899999997 899999999999997 42 899999999999999999
Q ss_pred cCccC---CCeEEEEcCCch-hhhhHHHHH--hhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhc---
Q 014899 142 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 212 (416)
Q Consensus 142 ~GlDp---~k~~if~QS~v~-e~~el~w~L--~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~--- 212 (416)
+ ||| +++.||.||+|+ ++.++.|+. ++.++++++.++.+||++. .+++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~----~~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL----EHGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH----TTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc----cCCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 888 999999999997 679999985 8999999999999998654 2678999999999999999999
Q ss_pred -ccceeecccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 213 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 213 -~adivpvG~DQ~~hleLaRdiA~r~-n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
++|+||||.||++|++++||+|+|| |. .+|..+.. ++||++ || +|||||. +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQ------------------TDAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------CCCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 73 12333433 589999 77 6999998 47
Q ss_pred ceecCC---CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhcCCCHHHHHHHHh-cCChhhHHHHHHHHHHH
Q 014899 291 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIE 366 (416)
Q Consensus 291 ~I~L~D---~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~ 366 (416)
+|+|+| +|+++++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~La~~v~~ 305 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQS-------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTK 305 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999 9999999999952 123455555555556678889999997 45899999999999999
Q ss_pred hhhHHHHHHH
Q 014899 367 HLHPIQVRYE 376 (416)
Q Consensus 367 ~L~pirer~~ 376 (416)
++++.++..+
T Consensus 306 ~~hg~~~~~~ 315 (420)
T 1jil_A 306 FIHGEDALND 315 (420)
T ss_dssp HHHCHHHHHH
T ss_pred HHcCHHHHHH
Confidence 9999776544
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.2e-48 Score=422.26 Aligned_cols=263 Identities=14% Similarity=0.149 Sum_probs=216.4
Q ss_pred CCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhh---cCcEEEEEeCcceecC-C--CCHHHHHHHHHHHHHHHHH
Q 014899 68 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN---SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLA 141 (416)
Q Consensus 68 ~~~~~~~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~---~~~~~i~IaDlhA~t~-~--~~~~~i~~~~~~~~a~~lA 141 (416)
.++++..+..|+|+- |||.+||||++++++.|.++|+ .++++|+||||||+++ + .+++++++++.+++++|+|
T Consensus 375 ~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~a 453 (690)
T 3p0j_A 375 LPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKA 453 (690)
T ss_dssp -CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 344455677888888 9999999999997664666654 3689999999999998 3 5899999999999999999
Q ss_pred cCccCCCeEEEEcCCchhh-hhHHHH----HhhcccHHHHhhhhhHHHHhHhhCCCCccchhhhhhHHHHHhhhhcccce
Q 014899 142 CGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 216 (416)
Q Consensus 142 ~GlDp~k~~if~QS~v~e~-~el~w~----L~~~~~~~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIl~~~adi 216 (416)
+|+|| +++|++||+|... .+++|. ++..++++|+.+.. +.+++++|+|+||+||||||+++++|+
T Consensus 454 lG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi 523 (690)
T 3p0j_A 454 YGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSH 523 (690)
T ss_dssp HTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSE
T ss_pred cCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCE
Confidence 99997 8999999998643 356775 57777787776542 236789999999999999999999999
Q ss_pred eecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014899 217 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 296 (416)
Q Consensus 217 vpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 296 (416)
+|||.||++|++||||+|++++ .|..++. +++|+|.++.++||||++ +|+|+|+|
T Consensus 524 ~~gG~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D 578 (690)
T 3p0j_A 524 VISTSLDGHINAFAREYTKERI--------------------DCVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDD 578 (690)
T ss_dssp EEECSTTTTTTHHHHHHTTTCS--------------------EEEECCC---CSSCCSSCCCC---------CCSCBTTC
T ss_pred EecccccHHHHHHHHHHHHhcc--------------------Ccccccc---cccccCCCcccccCCCCC--CCeeeccC
Confidence 9999999999999999998733 3444443 499999767666677765 69999999
Q ss_pred CHHHHHHHhhhcccCCCCCcccCCCCCCccchHHHHHHhhc-------------------CCCHHHHHHHHh--cCChhh
Q 014899 297 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-------------------GKTKGEVAEECQ--NMNWGT 355 (416)
Q Consensus 297 ~~e~I~kKI~kA~Td~~~~~~~~~~~rp~v~~ll~i~~~~s-------------------~~~~eel~~~y~--~l~~~d 355 (416)
+|++|++|||+|||++ + ++.|++++|++++. +++++||+++|. .+||+|
T Consensus 579 ~~~~i~~KI~kA~c~p---------~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~d 648 (690)
T 3p0j_A 579 NDMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPAD 648 (690)
T ss_dssp CHHHHHHHHHHSCCCT---------T-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHH
T ss_pred CHHHHHHHHHHhcCCC---------C-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHHH
Confidence 9999999999999864 2 56789999999861 469999999997 599999
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 014899 356 FKPLLTDALIEHLHPIQVRYE 376 (416)
Q Consensus 356 lK~~Lae~I~~~L~pirer~~ 376 (416)
+|++|+++|+++|+|+|++|+
T Consensus 649 lK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 649 LKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.11 E-value=4.9e-11 Score=117.30 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=102.1
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh-
Q 014899 82 VQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 159 (416)
Q Consensus 82 i~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e- 159 (416)
=.|||.+||||+.+++.+|...+.. +..++-|-|.. +.....+....+.+++.++|++++.. +++||+..+
T Consensus 12 PsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD------~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~ 84 (298)
T 1nzj_A 12 PSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDID------PPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDA 84 (298)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSC------GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCC------chhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHH
Confidence 3567999999999999999877664 45666677742 11334566778888999999999874 789999543
Q ss_pred hhh-------HHHHHhhcccHHHHhhhhh-HHHHhHh---hC---------------CCCccchhhhhhH-HHHHhhhhc
Q 014899 160 HVE-------LMWLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLY 212 (416)
Q Consensus 160 ~~e-------l~w~L~~~~~~~~l~R~~~-~k~~~~~---~~---------------~~~~~~g~l~YPv-LQAADIl~~ 212 (416)
+.+ .-+.+.|.++-.+++++.. |....+. .+ .+..-.|.+.++. .+..|.+++
T Consensus 85 y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~ 164 (298)
T 1nzj_A 85 YREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIH 164 (298)
T ss_dssp HHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEE
T ss_pred HHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEE
Confidence 211 1122568888888876411 0000000 00 0011124444544 455677776
Q ss_pred ccceeec-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCccccc
Q 014899 213 QSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMS 273 (416)
Q Consensus 213 ~adivpv-------------------G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~ 273 (416)
++|-.|. |.|+..+...-..+.+.|+ ++.|...+.+ +|.+
T Consensus 165 R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~p---ll~~ 223 (298)
T 1nzj_A 165 RRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLP---LALN 223 (298)
T ss_dssp CTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEEC---BCCC
T ss_pred CCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEee---eeEC
Confidence 6555555 9999987766666666554 4567666553 7778
Q ss_pred CCCCCCccccCCC
Q 014899 274 LTDGLSKMSKSAP 286 (416)
Q Consensus 274 L~dg~~KMSKS~p 286 (416)
. +| +||||+..
T Consensus 224 ~-~g-~KLSKR~g 234 (298)
T 1nzj_A 224 P-QG-AKLSKQNH 234 (298)
T ss_dssp -------------
T ss_pred C-CC-CcccccCC
Confidence 7 56 69999974
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.02 E-value=5.1e-10 Score=117.07 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=127.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcCcEEEE-EeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCe-------EEEEc
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 154 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~-IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~-------~if~Q 154 (416)
.|||.+||||+..++.+|...+..+-.+++ |-|. ++ .....+....+..++..+||+++.. .+|+|
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~Q 87 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQ 87 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCeee
Confidence 567999999999999999876665556666 7776 21 1334456678888899999999974 58999
Q ss_pred CCchhhhhHH--------HHHhhcccHHHHhhhh---------hHHHHh---------H--hhCCC----------Cc--
Q 014899 155 SHVRAHVELM--------WLLSSATPIGWLNKMI---------QFKEKS---------H--KAGGE----------NV-- 194 (416)
Q Consensus 155 S~v~e~~el~--------w~L~~~~~~~~l~R~~---------~~k~~~---------~--~~~~~----------~~-- 194 (416)
|+..+.-..+ ..+.|+++-.+|+++. .|.... + ..|.. .+
T Consensus 88 S~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~ 167 (498)
T 2ja2_A 88 SQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAW 167 (498)
T ss_dssp GGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEE
T ss_pred ecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEE
Confidence 9975432111 1256999988886542 111100 0 01100 00
Q ss_pred ---cchhhhhhHHHHHhhhhcccceeec-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCC
Q 014899 195 ---GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 252 (416)
Q Consensus 195 ---~~g~l~YPvLQAADIl~~~adivpv-------------------G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~ 252 (416)
-.|.+.++.-+.-|.+++++|-.|. |.|+..+...-+.+.+.||. +| .|
T Consensus 168 ~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g------~g-- 238 (498)
T 2ja2_A 168 NDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IG------VA-- 238 (498)
T ss_dssp EETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TT------SC--
T ss_pred EecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hc------CC--
Confidence 1244566655666777666555555 99999999999999999876 53 11
Q ss_pred CCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014899 253 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 307 (416)
Q Consensus 253 ~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 307 (416)
++.|+..+.+ +|.+. +| +||||++. .+.|.+ .|+.|..-+..
T Consensus 239 ----~~~P~~~h~p---lil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 239 ----ERIPKFAHLP---TVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp ----CCCCEEEEEC---CEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred ----CCCCeEEEee---eeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHH
Confidence 5667766543 77776 56 69999974 233332 46666666554
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.89 E-value=8.6e-10 Score=114.65 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=123.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE-------EEEc
Q 014899 83 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 154 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~Q 154 (416)
.|||.+||||+..++.+|...+.. +.+++=|-|. ++. ....+....+..++..+||+++... .|+|
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~~--R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DRA--RYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CTT--SCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCc--ccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 578999999999999999766554 4555556665 211 2233456678888999999999753 5999
Q ss_pred CCchh-hhhHH-------HHHhhcccHHHHhhhh-------------hHHHHhH--hhCC---------C--Cc-----c
Q 014899 155 SHVRA-HVELM-------WLLSSATPIGWLNKMI-------------QFKEKSH--KAGG---------E--NV-----G 195 (416)
Q Consensus 155 S~v~e-~~el~-------w~L~~~~~~~~l~R~~-------------~~k~~~~--~~~~---------~--~~-----~ 195 (416)
|+..+ +.+.. ..+.|.++-.+++++. +..+..+ ..|. . .+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 99653 21111 1245888888876532 1111111 0110 0 01 1
Q ss_pred chhhhhhHHHHHhhhhcccceeec-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 014899 196 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 256 (416)
Q Consensus 196 ~g~l~YPvLQAADIl~~~adivpv-------------------G~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~ 256 (416)
.|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.|+
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------ 224 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------ 224 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence 245677777777888877666666 9999999998888888765
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014899 257 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 307 (416)
Q Consensus 257 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 307 (416)
++.|+..+. ++|.+. +| +||||++.+ . .|.+ .|+.|.+-+..
T Consensus 225 ~~~p~~~h~---~li~~~-~g-~klSKR~g~---~-~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 WEAPRFYHM---PLLRNP-DK-TKISKRKSH---T-SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CCCCEEEEE---CCCBCT-TS-CBCCTTTSC---C-BHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeEEEe---eeeeCC-CC-Cccccccch---h-hHHHHHHCCCCHHHHHHHHHH
Confidence 455765543 367776 56 699999853 2 2322 57777776654
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.83 E-value=5.9e-10 Score=116.42 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=121.5
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE----
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 150 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~---- 150 (416)
.++=-.=.|||.+||||+..++.+|...+.. +.+++-|-|. ++ .....+....+..++..+|++++...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 3444455678999999999999999766554 5566666665 21 12344566678888999999999754
Q ss_pred ---EEEcCCchhh-hhHHH-------HHhhcccHHHHhhh--hhHHHH--hHhhC---------C-CCc-----cchhhh
Q 014899 151 ---VFVQSHVRAH-VELMW-------LLSSATPIGWLNKM--IQFKEK--SHKAG---------G-ENV-----GVALLT 200 (416)
Q Consensus 151 ---if~QS~v~e~-~el~w-------~L~~~~~~~~l~R~--~~~k~~--~~~~~---------~-~~~-----~~g~l~ 200 (416)
.|+||+..+. .+..- .+.|.++-.+|+++ +.|... ....| + ..+ -.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 7999996432 11111 13477776666542 111100 00001 0 000 023333
Q ss_pred hhHHHHHhhhhc-------------------ccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 014899 201 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 261 (416)
Q Consensus 201 YPvLQAADIl~~-------------------~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~ 261 (416)
++.-+.-|.+++ +.|+|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 333333344433 46666669999999988888888765 56677
Q ss_pred eecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014899 262 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 307 (416)
Q Consensus 262 ~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 307 (416)
..+.+ +|.+. +| +||||++.+ +.|.+ .|+.|.+-+..
T Consensus 242 f~H~p---li~~~-~g-~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 242 FMHIP---LILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp EEEEC---CEECT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEEe---eeeCC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 66553 78887 66 699999842 34432 57777776665
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.71 E-value=1.2e-09 Score=116.41 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=118.0
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE----
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 150 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~---- 150 (416)
.++=-.=.|||.+||||+.+++.+|.-.+.. +++++-|.|. ++. ....+....+..++..+|++++...
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~~--r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CSS--SCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Chh--hccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 3444446778999999999999999755443 5677777773 322 2334556678888899999999753
Q ss_pred ---EEEcCCchhh-hhHH-------HHHhhcccHHHHhhh--hhHHHH--hHhhC---------C-CC-----ccchhhh
Q 014899 151 ---VFVQSHVRAH-VELM-------WLLSSATPIGWLNKM--IQFKEK--SHKAG---------G-EN-----VGVALLT 200 (416)
Q Consensus 151 ---if~QS~v~e~-~el~-------w~L~~~~~~~~l~R~--~~~k~~--~~~~~---------~-~~-----~~~g~l~ 200 (416)
.|+||+..+. .+.. ..+.|.++-.+|++. +.|... ....| + .. .-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 7899996432 1111 113477666555442 001000 00000 0 00 0112233
Q ss_pred hhHHHHHhhhh-------------------cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 014899 201 YPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 261 (416)
Q Consensus 201 YPvLQAADIl~-------------------~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~ 261 (416)
+|.-+.-|.++ .+.|+|.-|.|+..+...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 33222233333 356677779999999988888776643 45565
Q ss_pred eecCCCCcccccCCCCCCccccCCCCCCCceecC---C---CHHHHHHHhhh
Q 014899 262 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL---D---PKDVIANKIKR 307 (416)
Q Consensus 262 ~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~---D---~~e~I~kKI~k 307 (416)
..+. ++|.+. +| +||||++.+ +.|. + .|+.|.+-+..
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEe---eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 5443 377787 56 699999842 3333 2 57887777765
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.59 E-value=3.6e-07 Score=95.54 Aligned_cols=193 Identities=17% Similarity=0.168 Sum_probs=117.0
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEcCCchh
Q 014899 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 159 (416)
Q Consensus 81 Gi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~v~e 159 (416)
.=.|||.+||||+..++.+|...+.. +.+++=|-|.- + .....+....+..++..+||+++. ..|.||+..+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~ 79 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLD 79 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHH
Confidence 34578999999999999999765543 56666666652 1 122345667888889999999986 4799999532
Q ss_pred -hhhHHHH-------HhhcccHHHHhhhh----------hHHH---------HhH--hhCCC-----Ccc----------
Q 014899 160 -HVELMWL-------LSSATPIGWLNKMI----------QFKE---------KSH--KAGGE-----NVG---------- 195 (416)
Q Consensus 160 -~~el~w~-------L~~~~~~~~l~R~~----------~~k~---------~~~--~~~~~-----~~~---------- 195 (416)
+.+..-. +.|+++-.+|+.+. .|.. ..+ ..|.. .++
T Consensus 80 ~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (492)
T 2cfo_A 80 LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL 159 (492)
T ss_dssp HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence 2222211 34777776665421 1110 000 00100 000
Q ss_pred -chhhhhhHHH-------------------------HHhhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCcccccc
Q 014899 196 -VALLTYPVLM-------------------------ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 249 (416)
Q Consensus 196 -~g~l~YPvLQ-------------------------AADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~ 249 (416)
-|.+.++.-. +.|....+.|+|..|.|+..+-..-..+.+.|+
T Consensus 160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg----------- 228 (492)
T 2cfo_A 160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG----------- 228 (492)
T ss_dssp TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT-----------
T ss_pred ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC-----------
Confidence 0222233333 334444556677799999999888877777654
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014899 250 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 307 (416)
Q Consensus 250 g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 307 (416)
++.|...+.+ +|.+. +| +|||||+.+ +.+.+ .|+.|..=+..
T Consensus 229 -------~~~P~~~H~p---lil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 -------ATPPNFAHTP---LILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp -------CCCCEEEEEC---CEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred -------CCCceEEEee---eEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 4567666553 77787 66 699999843 23321 57777776655
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.23 E-value=1.8e-05 Score=82.41 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=111.4
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCe-----
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 149 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~----- 149 (416)
.+....=.|||.+||||.-+++-+|.--... +..++=|-|.- + .....+....+..++..+|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD----~--~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD----L--ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS----C--CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC----c--cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 4667788899999999999999998643332 34433333322 1 1233455667778888999998863
Q ss_pred --EEEEcCCch----hhhhHHHH----HhhcccHHHHhhhh----------hHH----HH-------hH--hhCC-----
Q 014899 150 --SVFVQSHVR----AHVELMWL----LSSATPIGWLNKMI----------QFK----EK-------SH--KAGG----- 191 (416)
Q Consensus 150 --~if~QS~v~----e~~el~w~----L~~~~~~~~l~R~~----------~~k----~~-------~~--~~~~----- 191 (416)
-.|.||+-. ++.+...- +.|.++-.++..+. .|. +. .+ ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 257799832 22221111 23444433332110 000 00 00 0010
Q ss_pred --------------------CCccchhhh------hhHHHHHhhh---hcccceeecccchHHHHHHHHHHHHHHhhhhC
Q 014899 192 --------------------ENVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 242 (416)
Q Consensus 192 --------------------~~~~~g~l~------YPvLQAADIl---~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg 242 (416)
.+..+|-++ ||..+-|+++ ..+.|+|..|.||..|...-..+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 000111111 4444444443 3578999999999999988777777654
Q ss_pred CccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014899 243 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 307 (416)
Q Consensus 243 ~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 307 (416)
++.|...+.+ ++.+. +| +||||+..+ ..|.| .|+.|.+-+..
T Consensus 244 --------------~~~p~~~H~p---lil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 244 --------------KAPPVFAHVS---TILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp --------------CCCCEEEEEC---CEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHT
T ss_pred --------------CCCCeEEEEe---eEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 5567655543 56665 66 599999843 23322 46666665544
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.84 E-value=3.5e-05 Score=80.38 Aligned_cols=200 Identities=19% Similarity=0.186 Sum_probs=108.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcCcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+.++=-.=.|||.+||||+..++.+|...+...-.+++--|. |++ .....+....+..++..+|++++. ..|.|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieD---tD~--~R~~~~~~~~i~~dl~wlGl~~d~-~~~~q 98 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIED---TDV--ERSSQEAVDAILEGMAWLGLDYDE-GPYYQ 98 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECC---CCG--GGCCHHHHHHHHHHHHHTTCCCSE-EEEEG
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCC---CCc--ccccHHHHHHHHHHHHHcCCCCCC-CCccc
Confidence 344444455679999999999999997655443344443333 221 123356677888899999999986 47899
Q ss_pred CCch-hhhhHH-------HHHhhcccHHHHhhhhhH--HH--------HhHhh----------CC----------C-Ccc
Q 014899 155 SHVR-AHVELM-------WLLSSATPIGWLNKMIQF--KE--------KSHKA----------GG----------E-NVG 195 (416)
Q Consensus 155 S~v~-e~~el~-------w~L~~~~~~~~l~R~~~~--k~--------~~~~~----------~~----------~-~~~ 195 (416)
|+.. .+.+.. +.+.|+++-.+|+.+..- .. ..+.. +. + .+.
T Consensus 99 S~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~ 178 (490)
T 4g6z_A 99 MQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVA 178 (490)
T ss_dssp GGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEE
T ss_pred ccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEE
Confidence 9942 222211 124577777766543110 00 00000 00 0 000
Q ss_pred -----chhhh----------------hhHHHHH---hhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCC
Q 014899 196 -----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 251 (416)
Q Consensus 196 -----~g~l~----------------YPvLQAA---DIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~ 251 (416)
-|.+. ||..+-| |=...+.++|.-|.|...+--.-..+.+.|+
T Consensus 179 ~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG------------- 245 (490)
T 4g6z_A 179 WDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG------------- 245 (490)
T ss_dssp EEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-------------
T ss_pred EEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-------------
Confidence 01111 2323322 2233568999999999766544444544433
Q ss_pred CCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC------CCHHHHHHHhhh
Q 014899 252 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKR 307 (416)
Q Consensus 252 ~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~------D~~e~I~kKI~k 307 (416)
++.|...+.+ +|.+- +| +||||.+.. ..|. -.|+.|.+-+..
T Consensus 246 -----~~~P~f~Hlp---Li~~~-~g-~KLSKR~g~----~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 246 -----GEVPVYAHLP---TVLNE-QG-EKMSKRHGA----MSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp -----CCCCEEEEEC---CEECT-TS-SBCCTTTTC----CBHHHHHHTTCCHHHHHHHHHT
T ss_pred -----CCCCeEEEec---ceeCC-CC-CcccCCCCC----cCHHHHHHCCCCHHHHHHHHHH
Confidence 6778766654 77775 56 799999742 3332 268888777654
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.56 E-value=0.0004 Score=73.24 Aligned_cols=176 Identities=21% Similarity=0.200 Sum_probs=89.5
Q ss_pred EEEecCC--CCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 78 IVSGVQP--TGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 78 i~sGi~P--TG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+.+=|.| ||.+||||...++.+|..-... +.+++=|-|. ++ .....+....+.+++..+|++++ ..+.|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt----D~--~R~~~e~~~~I~edL~wLGl~wd--~~~~q 168 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT----DP--RRVDPEAYDMIPADLEWLGVEWD--ETVIQ 168 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCTTHHHHHHHHHHHHTCCCS--EEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCC--CCccc
Confidence 4555555 5999999999999888643332 3444444443 11 12233566678888899999997 58999
Q ss_pred CCch-hhhhHHHH-------HhhcccHHHHhhhh-----------hHHHHhH-----hhCCC--------------Cccc
Q 014899 155 SHVR-AHVELMWL-------LSSATPIGWLNKMI-----------QFKEKSH-----KAGGE--------------NVGV 196 (416)
Q Consensus 155 S~v~-e~~el~w~-------L~~~~~~~~l~R~~-----------~~k~~~~-----~~~~~--------------~~~~ 196 (416)
|+.. .+.+..-. +.|.++-.++.... +..+..+ ..|.+ +.++
T Consensus 169 Sdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 169 SDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGG
T ss_pred ccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCC
Confidence 9953 23222211 23666655543210 0000000 00100 0010
Q ss_pred ----------------hh--hhhhHHH---HHhhhhcccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 014899 197 ----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 255 (416)
Q Consensus 197 ----------------g~--l~YPvLQ---AADIl~~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~ 255 (416)
|- ..||..+ +.|.-..+.|+|..|.|...+-..-.-+...++
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG----------------- 311 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG----------------- 311 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT-----------------
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC-----------------
Confidence 11 1355444 445556789999999999876655554444433
Q ss_pred cccCCceecCCCCcccccCCCCCCccccCC
Q 014899 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSA 285 (416)
Q Consensus 256 ~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 285 (416)
++.|...+. ++| .+ +| .|||||.
T Consensus 312 -~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 -WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp -CCCCEEECC---CCB-C---------CHH
T ss_pred -CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 456766654 366 44 56 6999996
No 46
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.31 E-value=0.00067 Score=70.42 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=48.1
Q ss_pred ceEEEecC--CCCcchhhhHHHHHHH--HHHHhh--cCcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014899 76 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 140 (416)
Q Consensus 76 ~~i~sGi~--PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 140 (416)
..+++|-- |||.+||||....+.. +.++++ +++|.+.. .|-|..-. ..++ +-..++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45556655 5699999998876633 344544 35664432 34333211 1134 344556677888899
Q ss_pred HcCccCCCeEEEEcCC
Q 014899 141 ACGIDNSKASVFVQSH 156 (416)
Q Consensus 141 A~GlDp~k~~if~QS~ 156 (416)
++|++++ .++.+++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999988 4566776
No 47
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.25 E-value=0.001 Score=69.03 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=46.9
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHH--HHHHhh--cCcEEEEE-eCcceecC-------CCCHHH-HHHHHHHHHHHHH
Q 014899 76 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 140 (416)
Q Consensus 76 ~~i~sGi~P--TG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~~a~~l 140 (416)
..+++|--| +|.+||||....+.. +.++++ +++|.+.. .|-|..-. ..++.+ ..++...+.+++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 355666666 799999999876633 344444 35665432 33332210 123433 3445567778889
Q ss_pred HcCccCCCeEEEEcCC
Q 014899 141 ACGIDNSKASVFVQSH 156 (416)
Q Consensus 141 A~GlDp~k~~if~QS~ 156 (416)
++|++++ .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999887 4566666
No 48
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.13 E-value=0.0018 Score=67.90 Aligned_cols=181 Identities=19% Similarity=0.171 Sum_probs=101.3
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcCcEEEE-EeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeE---
Q 014899 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS--- 150 (416)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylg~i~~~~~lQ~~~~~~i~-IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~--- 150 (416)
.|-|=|. |||.+||||...++-+|.--....-.+++ |=|. ++. ....+....+..++.-+||+++...
T Consensus 24 ~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt----D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~ 97 (512)
T 4gri_A 24 STRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT----DQS--RYSPEAENDLYSSLKWLGISFDEGPVVG 97 (512)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTB
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccC
Confidence 3444444 56999999999999999644333333444 4443 221 1112344456667778899987533
Q ss_pred ----EEEcCCchh----hhhHHHH----HhhcccHHHHhhhhhHH-------------------HHhH--hhCC------
Q 014899 151 ----VFVQSHVRA----HVELMWL----LSSATPIGWLNKMIQFK-------------------EKSH--KAGG------ 191 (416)
Q Consensus 151 ----if~QS~v~e----~~el~w~----L~~~~~~~~l~R~~~~k-------------------~~~~--~~~~------ 191 (416)
.|+||+-.+ +.+..+- +.|.++-.++++...-. +... ..+.
T Consensus 98 g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~ 177 (512)
T 4gri_A 98 GDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRF 177 (512)
T ss_dssp CTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeee
Confidence 578998432 2222211 45888876665432211 0000 0000
Q ss_pred ----C-Cc-----cchhhh-----------------hhHHHHHhh---hhcccceeecccchHHHHHHHHHHHHHHhhhh
Q 014899 192 ----E-NV-----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLY 241 (416)
Q Consensus 192 ----~-~~-----~~g~l~-----------------YPvLQAADI---l~~~adivpvG~DQ~~hleLaRdiA~r~n~~y 241 (416)
+ ++ -.|.+. ||..+=|-. ...+.++|.-|.|...+--.-.-|.+.|+
T Consensus 178 k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg--- 254 (512)
T 4gri_A 178 KIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK--- 254 (512)
T ss_dssp CCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT---
T ss_pred cccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC---
Confidence 0 00 011111 222222221 23478999999999887776666666554
Q ss_pred CCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014899 242 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 242 g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 286 (416)
++.|...+.+ +|.+- +| +|+||.+.
T Consensus 255 ---------------~~~P~y~H~p---li~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 ---------------WKPPIYCHLP---MVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp ---------------CCCCEEEEEC---CCBCT-TS-SBCCTTTS
T ss_pred ---------------CCCCeEEecc---hhccc-cc-cccCcccc
Confidence 6788776664 77775 56 69999974
No 49
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=96.98 E-value=0.0049 Score=64.93 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=43.4
Q ss_pred ceEEEec--CCCCcchhhhHHHHHHH--HHHHhh--cCcEEEE-EeCcceecC-------CCCHHH-HHHHHHHHHHHHH
Q 014899 76 KRIVSGV--QPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYL 140 (416)
Q Consensus 76 ~~i~sGi--~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~~~~a~~l 140 (416)
..+++|- -|||.+||||...++.. +.++++ +++|.+. -.|.|..-. ..++++ ..+....+..++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 44599999999876633 334444 3677543 345554321 124433 4445567778889
Q ss_pred HcCccCCC
Q 014899 141 ACGIDNSK 148 (416)
Q Consensus 141 A~GlDp~k 148 (416)
++|++.+.
T Consensus 99 ~lgi~~d~ 106 (560)
T 3h99_A 99 GFNISYDN 106 (560)
T ss_dssp HTTCCCSE
T ss_pred HcCCCCCC
Confidence 99998874
No 50
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=96.94 E-value=0.0066 Score=63.62 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=46.6
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHH--HHHHhhc--CcEEE-EEeCcceecC-------CCCHHH-HHHHHHHHHHHHH
Q 014899 76 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 140 (416)
Q Consensus 76 ~~i~sGi~P--TG~lHLGnylg~i~~--~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~~~-i~~~~~~~~a~~l 140 (416)
..+++|--| ||.+||||..+++.. +.++++. ++|.+ .-.|.|..-. ..++++ ..+....+.+++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445555554 599999998776632 3444443 67654 4456554311 124433 3445566777888
Q ss_pred HcCccCCCeEEEEcCC
Q 014899 141 ACGIDNSKASVFVQSH 156 (416)
Q Consensus 141 A~GlDp~k~~if~QS~ 156 (416)
++|++++ .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999887 3444443
No 51
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=96.02 E-value=0.0039 Score=66.37 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=28.0
Q ss_pred ceEEEecCCCCcchhhhHHHHH--HHHHHHhhc--CcEEE--EEeCc
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLF--FIVDL 116 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i--~IaDl 116 (416)
..-|+|--|+|.+||||.-+++ .-+.++.+. ++|++ -|.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3447789999999999987765 224455553 57654 46776
No 52
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=95.97 E-value=0.24 Score=51.11 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=42.0
Q ss_pred EEEecCCCCcchhhhHHHHHHH--HHHHhh--cCcEEEEE-eCccee--cC-----CCCHH-HHHHHHHHHHHHHHHcCc
Q 014899 78 IVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI--TL-----PYDTQ-QLSKATRETAAIYLACGI 144 (416)
Q Consensus 78 i~sGi~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~--t~-----~~~~~-~i~~~~~~~~a~~lA~Gl 144 (416)
.++|.-|.|.+||||....+.. +.++++ +++|.+.. .|.|-- .. ..++. -..+++..+.+++.++|+
T Consensus 29 YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI 108 (462)
T 3tqo_A 29 YVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRV 108 (462)
T ss_dssp EECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3568888899999998775522 222322 36765443 333321 00 12343 334556678888899999
Q ss_pred cCCC
Q 014899 145 DNSK 148 (416)
Q Consensus 145 Dp~k 148 (416)
.++.
T Consensus 109 ~~d~ 112 (462)
T 3tqo_A 109 LSPD 112 (462)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 53
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.14 E-value=0.069 Score=56.31 Aligned_cols=76 Identities=14% Similarity=-0.008 Sum_probs=49.9
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
.+.=-+=.|||.+||||.-.++.+|.-.... +.+++=|-|. + +.....+....+..++..+|++++. ..+.|
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT----D--~~R~~~e~~~~I~edL~wLGl~wde-~~~~q 99 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT----N--PVKEDIEYVESIKNDVEWLGFHWSG-NVRYS 99 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----C--GGGCCHHHHHHHHHHHHHTTCCCSS-SCEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC----C--chhcCHHHHHHHHHHHHHcCCCCCC-CCeeh
Confidence 3333455677999999999999888644332 3444444443 1 1123345666788888999999854 36899
Q ss_pred CCch
Q 014899 155 SHVR 158 (416)
Q Consensus 155 S~v~ 158 (416)
|+..
T Consensus 100 Ser~ 103 (553)
T 1qtq_A 100 SDYF 103 (553)
T ss_dssp GGGH
T ss_pred cccH
Confidence 9854
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=93.82 E-value=0.089 Score=56.39 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=26.4
Q ss_pred EEEecCCCCcchhhhHHHHH--HHHHHHhhc--CcEEE--EEeCc
Q 014899 78 IVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLF--FIVDL 116 (416)
Q Consensus 78 i~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~i--~IaDl 116 (416)
=|+|--|+|.+|+||.-+++ .-+.++.+. ++|+. -|.||
T Consensus 124 e~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 124 EHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp ECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred EeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 37899999999999987655 223344342 67643 56777
No 55
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.65 E-value=0.098 Score=57.73 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=50.2
Q ss_pred EEE--ecCCCCcchhhhHHHHHHHHHHHhhc-CcEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCccCCCeEEEEc
Q 014899 78 IVS--GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 154 (416)
Q Consensus 78 i~s--Gi~PTG~lHLGnylg~i~~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~Q 154 (416)
+.+ +=.|||.+||||.-.++.+|..-... +.+++=|-|. ++. ....+....+..++..+||+++. .+++|
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~~~q 139 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HFYYA 139 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-CcccH
Confidence 445 66677999999999999888644332 3444444443 221 23445667788888999999854 47899
Q ss_pred CCch
Q 014899 155 SHVR 158 (416)
Q Consensus 155 S~v~ 158 (416)
|+..
T Consensus 140 Ser~ 143 (851)
T 2hz7_A 140 SDYF 143 (851)
T ss_dssp GGGH
T ss_pred hhhH
Confidence 9953
No 56
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=91.93 E-value=0.53 Score=48.93 Aligned_cols=86 Identities=9% Similarity=0.050 Sum_probs=51.4
Q ss_pred CCceEEEe-cCCCCcchhhhHHHHHHH--HHHHhh--cCcEEEEE-eCcceec--C-----CCCH-HHHHHHHHHHHHHH
Q 014899 74 VKKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAIT--L-----PYDT-QQLSKATRETAAIY 139 (416)
Q Consensus 74 ~~~~i~sG-i~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t--~-----~~~~-~~i~~~~~~~~a~~ 139 (416)
+++.|-|. --++|.+||||.++.+.. ++++++ +++|++.- .|-|.+- . ..++ +-..++...+..++
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~ 88 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCF 88 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44555555 357899999999886522 334443 36776544 4445432 1 1244 44556667788889
Q ss_pred HHcCccCCCeEEEEcCCchhhhh
Q 014899 140 LACGIDNSKASVFVQSHVRAHVE 162 (416)
Q Consensus 140 lA~GlDp~k~~if~QS~v~e~~e 162 (416)
.++|++.+. |.-..-++|.+
T Consensus 89 ~~lgi~~D~---~~~T~~~~~~~ 108 (542)
T 3u1f_A 89 EQMDYSIDY---FIRTTNEQHKA 108 (542)
T ss_dssp HHHTCCCSE---EEETTCHHHHH
T ss_pred HHhCCccCc---CccCCCHHHHH
Confidence 999998874 33343444533
No 57
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=91.65 E-value=0.25 Score=51.55 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=49.6
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHH--HHhh--cCcE-EEEEeCcceecC--CC------------C-----------H
Q 014899 76 KRIVSGVQPTGSIHLGNYLGAIKNWI--ALQN--SYET-LFFIVDLHAITL--PY------------D-----------T 125 (416)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylg~i~~~~--~lQ~--~~~~-~i~IaDlhA~t~--~~------------~-----------~ 125 (416)
.++-+|.-|||.+||||.-.++..++ +... .+++ +++-.|.|--.. |. + .
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 45567999999999999988886632 2222 2565 344356554111 00 1 1
Q ss_pred HHHHHHHHHHHHHHHHcCccCCCeEEEEcCC
Q 014899 126 QQLSKATRETAAIYLACGIDNSKASVFVQSH 156 (416)
Q Consensus 126 ~~i~~~~~~~~a~~lA~GlDp~k~~if~QS~ 156 (416)
+-...+...+..++..+||+++ +|.||+
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 2234466777888889999886 358998
No 58
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=87.23 E-value=2.7 Score=44.14 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=48.1
Q ss_pred CCCCCCCCCceEEEec--CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCcceecC-------CCCHH-HHHHH
Q 014899 67 PVASSSSVKKRIVSGV--QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL-------PYDTQ-QLSKA 131 (416)
Q Consensus 67 ~~~~~~~~~~~i~sGi--~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~~-~i~~~ 131 (416)
+.+....++ .++++- -|+|.+||||..+++.. +.++++. ++|+ ++-.|.|..-. ..+++ -..+.
T Consensus 19 ~~~~~~~~~-~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~ 97 (564)
T 3kfl_A 19 PGSMKKQKV-FFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSV 97 (564)
T ss_dssp -----CCCC-EEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHH
T ss_pred CccccCCCC-EEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 343333333 334443 47799999998776632 4455553 6775 44456665321 12443 34455
Q ss_pred HHHHHHHHHHcCccCCCeEEEEcC
Q 014899 132 TRETAAIYLACGIDNSKASVFVQS 155 (416)
Q Consensus 132 ~~~~~a~~lA~GlDp~k~~if~QS 155 (416)
...+.+++..+|++.+. ++.-+
T Consensus 98 ~~~~~~~~~~lgi~~D~--~~~t~ 119 (564)
T 3kfl_A 98 SSEFKQCFQEMNYDMNY--FIRTT 119 (564)
T ss_dssp HHHHHHHHHHTTCCCSE--EEETT
T ss_pred HHHHHHHHHHcCCCCCc--cccCC
Confidence 56777888899998873 44444
No 59
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=86.76 E-value=1.7 Score=47.08 Aligned_cols=74 Identities=14% Similarity=0.237 Sum_probs=47.4
Q ss_pred CceEEEec-CCCCcchhhhHHH-HHH--HHHHHhhc--CcEEEEE-eCcceecC-------CCCHH-HHHHHHHHHHHHH
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLG-AIK--NWIALQNS--YETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIY 139 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg-~i~--~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~~-~i~~~~~~~~a~~ 139 (416)
+..|.+++ -|+|.+||||..+ .+. -+.++++. ++|++.. -|-|..-. ..++. -..++...+..+|
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566665 5679999999987 442 25556554 6775444 56665421 12453 3445566778888
Q ss_pred HHcCccCCC
Q 014899 140 LACGIDNSK 148 (416)
Q Consensus 140 lA~GlDp~k 148 (416)
..+|++.+.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999998874
No 60
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=85.63 E-value=0.25 Score=51.22 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=42.7
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhh--cCcEEEEE-eCcceecC-------CCCHHH-HHHHHHHHHHHHHHcCccCCCe
Q 014899 83 QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 149 (416)
Q Consensus 83 ~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~~a~~lA~GlDp~k~ 149 (416)
-|+|.+||||....+.. +.++++ +++|.++. .|-|..-. ..++.+ ..++...+.+++..+|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 35799999998776522 344444 35665432 34433211 123433 34566677888889999877
Q ss_pred EEEEcCC
Q 014899 150 SVFVQSH 156 (416)
Q Consensus 150 ~if~QS~ 156 (416)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4555555
No 61
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=85.09 E-value=0.26 Score=51.85 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=34.3
Q ss_pred cccceeecccchHHHHHH---HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 288 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleL---aRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 288 (416)
+.+|+..+|.||..++.+ ++-.+ .| ++.|..++.. ..+ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 346899999999885332 22222 23 4455554433 255 33 66 6999997
Q ss_pred CCceecC
Q 014899 289 QSRINLL 295 (416)
Q Consensus 289 ~s~I~L~ 295 (416)
||.|.+.
T Consensus 345 GNvV~p~ 351 (564)
T 3kfl_A 345 GNAFDPV 351 (564)
T ss_dssp TCCCCHH
T ss_pred CCCCCHH
Confidence 6888654
No 62
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=83.55 E-value=0.47 Score=49.28 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=31.7
Q ss_pred ccceeecccchHHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014899 213 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 289 (416)
Q Consensus 213 ~adivpvG~DQ~~hle---LaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 289 (416)
-+|+...|.||..++. .++-++. | ++.|..++.. ..+- . +| +|||||. |
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l~-~-~G-~KMSKSl---G 329 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWWT-K-DR-KKISKSL---G 329 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCCE-E-TT-BCCBTTT---T
T ss_pred cceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--ccee-c-CC-ceecccc---C
Confidence 3689999999977542 2222221 2 3445544433 2332 2 55 7999997 6
Q ss_pred Cceec
Q 014899 290 SRINL 294 (416)
Q Consensus 290 s~I~L 294 (416)
|.|..
T Consensus 330 Nvi~p 334 (542)
T 3u1f_A 330 NVFDP 334 (542)
T ss_dssp BCCCH
T ss_pred CCCCh
Confidence 77754
No 63
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=83.29 E-value=0.51 Score=51.75 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=34.8
Q ss_pred cccceeecccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~-hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
+-+|+..+|.||.. |+...+-...- .++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHH---HcCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999975 66654332221 1221 1234444332 23332 56 7999997 67
Q ss_pred ceecC
Q 014899 291 RINLL 295 (416)
Q Consensus 291 ~I~L~ 295 (416)
.|.+.
T Consensus 658 vv~p~ 662 (810)
T 1wkb_A 658 VLNFI 662 (810)
T ss_dssp CCBHH
T ss_pred cCCHH
Confidence 88764
No 64
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=82.41 E-value=3.6 Score=42.46 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=32.4
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
+.+|+..+|.||...+-+ -..|.-.- .| ++.|..++.. .+|.. +| +|||||. +|.
T Consensus 264 ~p~di~~~G~D~~~fh~~-~~~a~l~~--~g--------------~~~~~~v~~h--G~v~~--~G-~KMSKS~---GN~ 318 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTV-YWPAFLMS--AG--------------LPLPKRIFAH--GWLLN--RG-EKMSKSI---GNV 318 (524)
T ss_dssp CSCSEEEEEGGGHHHHHT-HHHHHHHH--HT--------------CCCCSCEEEE--CCEEE--CS-CSEETTT---EES
T ss_pred CCCeEEEEeechhHhHHH-HHHHHHHH--CC--------------CCCCcEEEEC--cEEEe--CC-cccCCcC---CCC
Confidence 358999999999853222 12222111 23 2334333322 23333 56 7999997 677
Q ss_pred eecC
Q 014899 292 INLL 295 (416)
Q Consensus 292 I~L~ 295 (416)
|.+.
T Consensus 319 v~p~ 322 (524)
T 2x1l_A 319 VDPV 322 (524)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 7764
No 65
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=82.38 E-value=0.82 Score=47.00 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=43.4
Q ss_pred ceE-EEecCCCCcchhhhHHHHHHH--HHHHhh--cCcEEEE--EeCcceec------CCCCHHHH-HHHHHHHHHHHHH
Q 014899 76 KRI-VSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFF--IVDLHAIT------LPYDTQQL-SKATRETAAIYLA 141 (416)
Q Consensus 76 ~~i-~sGi~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~--IaDlhA~t------~~~~~~~i-~~~~~~~~a~~lA 141 (416)
.++ ++|--|.|.+||||.-.++.. +.++++ +++|++. +.|+---+ ...++.++ ......+.+++.+
T Consensus 23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~ 102 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA 102 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 344 455555599999998776522 233333 3677554 23432110 01244333 3455677788889
Q ss_pred cCccCCCeEEEEcCC
Q 014899 142 CGIDNSKASVFVQSH 156 (416)
Q Consensus 142 ~GlDp~k~~if~QS~ 156 (416)
+|+.+.. .+..+|+
T Consensus 103 LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 103 LNILRPD-MEPRATH 116 (461)
T ss_dssp TTCCCCS-BCCBGGG
T ss_pred cCCCCCc-ccccccc
Confidence 9998522 2344554
No 66
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=80.74 E-value=0.7 Score=51.83 Aligned_cols=70 Identities=26% Similarity=0.273 Sum_probs=38.7
Q ss_pred cccceeecccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~-hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
+-+|+...|.||.. |+...+-...- .++. .+.|..++.. .++.. +| +|||||. ||
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 46899999999964 55554322211 1221 1224444332 24432 56 7999997 67
Q ss_pred ceecCC-----CHHHHHHHh
Q 014899 291 RINLLD-----PKDVIANKI 305 (416)
Q Consensus 291 ~I~L~D-----~~e~I~kKI 305 (416)
.|.+.| .++.+|==+
T Consensus 658 vv~p~d~i~~yGaDalR~~l 677 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYI 677 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHH
Confidence 887642 344454444
No 67
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=79.74 E-value=0.33 Score=50.16 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=25.6
Q ss_pred EEecCCCCcchhhhHHHHHHH--HHHHhhc--CcE--EEEEeCc
Q 014899 79 VSGVQPTGSIHLGNYLGAIKN--WIALQNS--YET--LFFIVDL 116 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i~~--~~~lQ~~--~~~--~i~IaDl 116 (416)
|+.--|||.+|+||.-+++.. ..++.+. ++| ..-|.||
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~ 79 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCc
Confidence 678889999999998765522 3344443 555 4567776
No 68
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=79.58 E-value=0.94 Score=50.56 Aligned_cols=58 Identities=31% Similarity=0.303 Sum_probs=34.4
Q ss_pred hcccceeecccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCC
Q 014899 211 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 286 (416)
Q Consensus 211 ~~~adivpvG~DQ~---~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p 286 (416)
.+-+|+...|.||. .|-.+...++- .|. .| ..++.. .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g~---------------~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RGV---------------SPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HSS---------------CSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hCC---------------CcccceeEe--eeEEcC-CC-cCccccc-
Confidence 35689999999997 34444554441 231 23 223322 255443 56 6999997
Q ss_pred CCCCceecC
Q 014899 287 SDQSRINLL 295 (416)
Q Consensus 287 ~~~s~I~L~ 295 (416)
||.|.+.
T Consensus 601 --GNvV~P~ 607 (917)
T 1ffy_A 601 --GNVIVPD 607 (917)
T ss_dssp --SCCCCHH
T ss_pred --CCcCChH
Confidence 6777653
No 69
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=79.31 E-value=0.66 Score=51.45 Aligned_cols=60 Identities=28% Similarity=0.361 Sum_probs=36.9
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 290 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 290 (416)
|-+|+...|.||.. +=.+|.++.-.. ..| ..| ..++.. .++... +| +|||||. ||
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g---------------~~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMG---------------ERPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSS---------------SCSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcC---------------CCcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 45899999999975 456777765542 123 124 223322 255444 56 6999997 67
Q ss_pred ceecC
Q 014899 291 RINLL 295 (416)
Q Consensus 291 ~I~L~ 295 (416)
.|...
T Consensus 536 vIdP~ 540 (862)
T 1gax_A 536 VIDPL 540 (862)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77653
No 70
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=79.30 E-value=0.92 Score=49.90 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.7
Q ss_pred cccceeecccchHH
Q 014899 212 YQSDFVPVGEDQKQ 225 (416)
Q Consensus 212 ~~adivpvG~DQ~~ 225 (416)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999973
No 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=78.42 E-value=0.77 Score=46.39 Aligned_cols=78 Identities=15% Similarity=0.007 Sum_probs=46.1
Q ss_pred eEEEecCCCCcchhhhHHHHHHH--HHHHhh--cCcEE-EEEeCcceecC-------CCCHHH-HHHHHHHHHHHHHHcC
Q 014899 77 RIVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETL-FFIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACG 143 (416)
Q Consensus 77 ~i~sGi~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~-i~IaDlhA~t~-------~~~~~~-i~~~~~~~~a~~lA~G 143 (416)
..++|.-|.|.+||||..+++.. +.++++ +++|. +.-.|.|..-. ..++.+ ...+...+.+++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 34567777799999998775522 333433 36765 34456654210 124433 3445567778889999
Q ss_pred cc-CCCeEEEEcCC
Q 014899 144 ID-NSKASVFVQSH 156 (416)
Q Consensus 144 lD-p~k~~if~QS~ 156 (416)
+. ++ .++..|+
T Consensus 122 i~~~d--~~~r~t~ 133 (414)
T 3c8z_A 122 VLPPH--DYVAATD 133 (414)
T ss_dssp CCCCS--EEEEGGG
T ss_pred CCCCc--ceecccc
Confidence 98 65 3444554
No 72
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=70.40 E-value=18 Score=36.25 Aligned_cols=30 Identities=23% Similarity=0.085 Sum_probs=19.6
Q ss_pred HHHhhhhcccceeecccchHH-HHHHHHHHH
Q 014899 205 MASDILLYQSDFVPVGEDQKQ-HLELTRELA 234 (416)
Q Consensus 205 QAADIl~~~adivpvG~DQ~~-hleLaRdiA 234 (416)
|+...+-...|+.++|.|+.. |++...-..
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~ 266 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHA 266 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHH
Confidence 344444345789999999887 776554443
No 73
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=69.48 E-value=22 Score=36.91 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=43.5
Q ss_pred CceEE-EecCCCCcchhhhHHHHH-----HHHHHHhhcCcEEEEE--eCc---------c--eecC-----CCCH-HHHH
Q 014899 75 KKRIV-SGVQPTGSIHLGNYLGAI-----KNWIALQNSYETLFFI--VDL---------H--AITL-----PYDT-QQLS 129 (416)
Q Consensus 75 ~~~i~-sGi~PTG~lHLGnylg~i-----~~~~~lQ~~~~~~i~I--aDl---------h--A~t~-----~~~~-~~i~ 129 (416)
++++| +|.-|.|.+||||....+ ..|.+++ +++|.+.. .|+ | .+.. ..++ +-..
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 44444 476666999999987654 2333322 47887663 443 2 2222 1244 3445
Q ss_pred HHHHHHHHHHHHcCccCCC
Q 014899 130 KATRETAAIYLACGIDNSK 148 (416)
Q Consensus 130 ~~~~~~~a~~lA~GlDp~k 148 (416)
+++..+.+++.++|+.++.
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 6667888899999998775
No 74
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=67.89 E-value=7.9 Score=42.84 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=28.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEE-EeCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~-IaDlhA~ 119 (416)
++.|++|. -|||.+|+||.++.+.+ +.+++.. ++|.+. --|-|.+
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCc
Confidence 45666653 45899999998875522 4445553 666544 4677776
No 75
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=67.44 E-value=11 Score=41.70 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=45.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 140 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 140 (416)
++.+++++ -|||.+||||..+.+.. +.++++. ++|.+.. -|-|.+-. ..++ +-..+++..+..++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677776 66799999998875522 3444443 6765433 45555421 1233 333455667788889
Q ss_pred HcCccCC
Q 014899 141 ACGIDNS 147 (416)
Q Consensus 141 A~GlDp~ 147 (416)
++|+..+
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998877
No 76
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=65.32 E-value=3.4 Score=45.82 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.6
Q ss_pred cccceeecccch-HHHHHHHHHHHHH
Q 014899 212 YQSDFVPVGEDQ-KQHLELTRELAER 236 (416)
Q Consensus 212 ~~adivpvG~DQ-~~hleLaRdiA~r 236 (416)
+-+|+...|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 469999999999 6777777776543
No 77
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=63.72 E-value=3.2 Score=43.23 Aligned_cols=30 Identities=17% Similarity=0.028 Sum_probs=19.8
Q ss_pred HHHHhhhhcccceeecccch-HHHHHHHHHH
Q 014899 204 LMASDILLYQSDFVPVGEDQ-KQHLELTREL 233 (416)
Q Consensus 204 LQAADIl~~~adivpvG~DQ-~~hleLaRdi 233 (416)
-|+...|--..|+..+|.|. .+|++--.-.
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAq 274 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAI 274 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHH
Confidence 34555555567999999997 4676654333
No 78
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=60.62 E-value=5.9 Score=44.00 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=20.7
Q ss_pred cccceeecccch-HHHHHHHHHHHHHHh
Q 014899 212 YQSDFVPVGEDQ-KQHLELTRELAERVN 238 (416)
Q Consensus 212 ~~adivpvG~DQ-~~hleLaRdiA~r~n 238 (416)
+-+|+-.+|.|| .-|+-.+|-+...+.
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L~ 569 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLMR 569 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHHH
Confidence 468999999999 568888886654443
No 79
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=59.55 E-value=3.3 Score=43.04 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=32.7
Q ss_pred cccceeecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCC-CCCCccccCCCC
Q 014899 212 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPS 287 (416)
Q Consensus 212 ~~adivpvG~DQ~~---hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~-dg~~KMSKS~p~ 287 (416)
+..++-++|.|+.. ......+++.. .+| .+.|..++.+ +|.. . +| +|||||.
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~---~i~~-~g~g-~KmSKs~-- 284 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYE---FVGI-KGQK-GKMSGSK-- 284 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEEC---CEEE-SCC-----------
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEE---EEEe-CCCC-CCCCCcC--
Confidence 34556688999887 22334566632 345 3456444432 4433 2 24 7999997
Q ss_pred CCCceecCC-----CHHHHHHHhhh
Q 014899 288 DQSRINLLD-----PKDVIANKIKR 307 (416)
Q Consensus 288 ~~s~I~L~D-----~~e~I~kKI~k 307 (416)
+|.|.+.| .|+.++.=+.+
T Consensus 285 -Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 -GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp --CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred -CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 45664432 56666666554
No 80
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=54.01 E-value=3 Score=42.85 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=3.6
Q ss_pred eecccchHHHHHH
Q 014899 217 VPVGEDQKQHLEL 229 (416)
Q Consensus 217 vpvG~DQ~~hleL 229 (416)
||||.||++|.|-
T Consensus 237 vp~~~d~~~~~~~ 249 (451)
T 3foc_A 237 VPLPVGTGNEDAA 249 (451)
T ss_dssp CBCC---------
T ss_pred cccccccccchhh
Confidence 6999999999544
No 81
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=53.61 E-value=15 Score=40.65 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=43.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhh--cCcEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 140 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 140 (416)
+..+++|+ -|+|.+||||..+.+.. +.++++ +++|.+.. -|-|.+-. ..++ +-..+++..+..++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35667773 44699999998875522 334444 36665433 34444321 1133 344556667788888
Q ss_pred HcCccCC
Q 014899 141 ACGIDNS 147 (416)
Q Consensus 141 A~GlDp~ 147 (416)
.+|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998665
No 82
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=50.11 E-value=5.9 Score=42.90 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=26.3
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC-----CHHHHHHHhhhc
Q 014899 257 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 308 (416)
Q Consensus 257 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D-----~~e~I~kKI~kA 308 (416)
++.|..++.. .++.. +| +|||||. +|.|+..| .++.+|==+.+.
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4566555433 24432 56 6999997 68887642 466666555543
No 83
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=48.81 E-value=35 Score=34.70 Aligned_cols=77 Identities=23% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHhhhhcccceeecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014899 205 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 283 (416)
Q Consensus 205 QAADIl~~~adivpvG~DQ~-~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSK 283 (416)
|+...+--..|+..+|.|+. +|++. ++|...-. +| .+.|..++.. .++.- +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~~--~~aq~~a~-~g--------------~~~~~~~~h~--g~v~~--~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHEN--EIAQSTCA-HD--------------GQYVNYWMHS--GMVMV--DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHHH--HHHHHHHH-SS--------------SCCEEEECCB--CCEEE--TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHHH--HHHHHHHh-cC--------------CCCCcEEEEe--eEEEE--CC-eEccc
Confidence 34444434678999999986 45433 44443221 23 2334333332 23332 55 69999
Q ss_pred CCCCCCCceecCC-----CHHHHHHHhh
Q 014899 284 SAPSDQSRINLLD-----PKDVIANKIK 306 (416)
Q Consensus 284 S~p~~~s~I~L~D-----~~e~I~kKI~ 306 (416)
|. +|.|.+.| +++.++-=+.
T Consensus 270 S~---GN~v~~~dll~~~g~dalR~~ll 294 (461)
T 1li5_A 270 SL---GNFFTVRDVLKYYDAETVRYFLM 294 (461)
T ss_dssp GG---TCCCBHHHHHTTSCHHHHHHHHH
T ss_pred cC---CCccChhHHhhhCCHHHHHHHHH
Confidence 97 67776542 4444544443
No 84
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=46.45 E-value=28 Score=37.88 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=25.4
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCccee
Q 014899 76 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 119 (416)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~ 119 (416)
+.|.+|. -|+|.+||||.++.+.+ +.++++. ++|.+.. -|.|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 4444443 35699999999886632 3444443 6665432 355544
No 85
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=44.02 E-value=67 Score=30.36 Aligned_cols=80 Identities=14% Similarity=0.256 Sum_probs=56.8
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcC-cEEEEEeCcceecC----CCCHHHHHHHH--------HHHHHHHHH
Q 014899 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYLA 141 (416)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~~--------~~~~a~~lA 141 (416)
...++.||-|=-.-|=+.++-.+-.|. +..+ +|.|+++|.++--+ ..++.+.++.+ +.....|.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998888999998888894 6664 69999999865533 23444333333 244455667
Q ss_pred cCccCCCeEEEEcCCch
Q 014899 142 CGIDNSKASVFVQSHVR 158 (416)
Q Consensus 142 ~GlDp~k~~if~QS~v~ 158 (416)
+|.+++ .+..=||+.
T Consensus 107 ~g~~~~--~v~~~Sd~~ 121 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFA 121 (257)
T ss_dssp HTCCTT--CEEETTTTT
T ss_pred cCCCcc--cceeHHHhh
Confidence 899887 566668874
No 86
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=42.67 E-value=10 Score=41.51 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=29.0
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhh--cCcEE-EEEeCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETL-FFIVDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~--~~~~~-i~IaDlhA~ 119 (416)
++.++.|. -|||.+|+||.++.+.+ +.+++. +++|. +.--|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 45666666 67899999999875522 334444 36664 444667665
No 87
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=40.50 E-value=52 Score=31.85 Aligned_cols=68 Identities=28% Similarity=0.286 Sum_probs=43.1
Q ss_pred cccceeecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 291 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 291 (416)
.++|..-.|..-.|.+.+-|.+++.+| |+.-..-.+. +.- .|| -.||+++
T Consensus 151 v~P~~a~FG~Kd~qql~~lr~mv~dl~------------------~~V~iv~vp~----vRe-~dG-laiSSrN------ 200 (301)
T 3cov_A 151 VRPDRVFFGEKDYQQLVLIRQLVADFN------------------LDVAVVGVPT----VRE-ADG-LAMSSRN------ 200 (301)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT------------------CCCEEEEECC----CBC-TTS-CBCCTTG------
T ss_pred cCCCeEEECCCcccCHHHHHHHHHHcC------------------CeEEEEeeCc----EEe-CCC-CEEEecc------
Confidence 378888889888999999999998866 3211100111 111 145 5999884
Q ss_pred eecCCCHHHHHHHhhhcc
Q 014899 292 INLLDPKDVIANKIKRCK 309 (416)
Q Consensus 292 I~L~D~~e~I~kKI~kA~ 309 (416)
.||++...+..-.|-++.
T Consensus 201 ~yLs~~eR~~A~~l~~~L 218 (301)
T 3cov_A 201 RYLDPAQRAAAVALSAAL 218 (301)
T ss_dssp GGCCHHHHHHTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 677766666665555554
No 88
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=39.31 E-value=20 Score=38.07 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=26.5
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--CcEE--EEEeCc
Q 014899 79 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL--FFIVDL 116 (416)
Q Consensus 79 ~sGi~PTG~lHLGnylg~i--~~~~~lQ~~--~~~~--i~IaDl 116 (416)
|+|--|+|.+|+||.-+++ .-+.++.+. ++|+ .-|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 6799999999999987765 224444443 6664 456774
No 89
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=37.78 E-value=21 Score=36.54 Aligned_cols=61 Identities=28% Similarity=0.178 Sum_probs=33.0
Q ss_pred ccee--ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC-CccccCCCCCCC
Q 014899 214 SDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQS 290 (416)
Q Consensus 214 adiv--pvG~DQ~~hleLaRdiA~r~n~~yg~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~~L~dg~-~KMSKS~p~~~s 290 (416)
.|.+ .+|.||..|+.--..+++.++ ++.|..-+... .++.-..||+ .|||||. ++
T Consensus 235 ~d~~Iyv~G~dq~~~f~~l~~~l~~lG------------------~~~~~~~h~~~-g~V~l~~dG~~~KMSKr~---Gn 292 (464)
T 3fnr_A 235 YGKCINIWGADHHGYIPRMKAAMEFLG------------------FDSNNLEIILA-QMVSLLKDGEPYKMSKRA---GN 292 (464)
T ss_dssp CSEEEEEEEGGGGGGHHHHHHHHHTTT------------------CCGGGEEEEEE-CCEEEEETTEECCC---C---CS
T ss_pred CCeEEEEecCcHHHHHHHHHHHHHHcC------------------CCccceEEEEe-eeEEecCCCcccCCcCcC---CC
Confidence 5644 799999999987766766543 32222111111 1331112553 5999997 68
Q ss_pred ceecCC
Q 014899 291 RINLLD 296 (416)
Q Consensus 291 ~I~L~D 296 (416)
.|.+.|
T Consensus 293 ~v~l~d 298 (464)
T 3fnr_A 293 FILMSD 298 (464)
T ss_dssp SCBHHH
T ss_pred CCCHHH
Confidence 887754
No 90
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=35.97 E-value=13 Score=41.32 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=29.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEE-EEEeCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~-i~IaDlhA~ 119 (416)
++.+.+|. -|||.+||||.+..+.+ +.++|.. ++|. +.--|-|.+
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGl 99 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhH
Confidence 46677776 56899999999875532 4455553 6664 444677766
No 91
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=34.76 E-value=14 Score=41.32 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=27.0
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--CcEEEEE-eCccee
Q 014899 75 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 119 (416)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg~i~~--~~~lQ~~--~~~~i~I-aDlhA~ 119 (416)
++.++.|. -|||.+|+||.+..+.+ +.+++.. ++|.+.. -|-|.+
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 56777776 35799999998875532 3445543 5664332 344433
No 92
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=32.93 E-value=18 Score=38.37 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=26.8
Q ss_pred hhhhhhHHHHHhh--hh-----cccceee--cccchHHHHHHHHHHHHHHh
Q 014899 197 ALLTYPVLMASDI--LL-----YQSDFVP--VGEDQKQHLELTRELAERVN 238 (416)
Q Consensus 197 g~l~YPvLQAADI--l~-----~~adivp--vG~DQ~~hleLaRdiA~r~n 238 (416)
|..+|- +.|| .. ++.|.+. +|.||..|+.-...+++.++
T Consensus 343 G~~~Y~---t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 343 GTTLYL---TRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp SCCCHH---HHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCcCCC---CCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 455563 5576 22 2456555 99999999988888877654
No 93
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=30.80 E-value=83 Score=29.54 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=58.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcC-cEEEEEeCcceecC----CCCHHHHHHHH--------HHHHHHHH
Q 014899 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 140 (416)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylg~i~~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~~--------~~~~a~~l 140 (416)
+...++.||-|=-.-|=+.++-.+-.|. +..+ +|-|+++|.+.-.+ ..++.+.++.+ ..+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999998888999998888894 6664 79999999954322 33443333333 23445667
Q ss_pred HcCccCCCeEEEEcCCch
Q 014899 141 ACGIDNSKASVFVQSHVR 158 (416)
Q Consensus 141 A~GlDp~k~~if~QS~v~ 158 (416)
++|.+.++..+..=||+.
T Consensus 106 ~~~~~~~~~rv~~~Sd~~ 123 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQ 123 (247)
T ss_dssp HHCTTGGGEEEEEHHHHT
T ss_pred HhCCCccCceeeeHHHhh
Confidence 789998887777668763
No 94
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=23.07 E-value=68 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014899 384 YLDKVLADGAAKAADIADATLNNVYQAMGFL 414 (416)
Q Consensus 384 ~l~~iL~~Ga~kAr~iA~~tl~~Vr~~~Gl~ 414 (416)
.++.-|++=-.+-.+|.++||.+--+.+|++
T Consensus 7 everklkefvrrhqeitqetlheyaqklgln 37 (52)
T 1y66_A 7 EVERKLKEFVRRHQEITQETLHEYAQKLGLN 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4566666666667777777777777777653
No 95
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=21.14 E-value=1.4e+02 Score=29.03 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=24.5
Q ss_pred cccceeecccchHHHHHHHHHHHHHHh
Q 014899 212 YQSDFVPVGEDQKQHLELTRELAERVN 238 (416)
Q Consensus 212 ~~adivpvG~DQ~~hleLaRdiA~r~n 238 (416)
.++|....|.--.|-+.+.|.+.+.+|
T Consensus 160 v~Pd~A~FGeKD~QQl~vIrrmV~DL~ 186 (314)
T 3inn_A 160 VGPDAAYFGEKDFQQLVIIRRMVDDMA 186 (314)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred cCCCEEEECccHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999877
Done!