RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014899
(416 letters)
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 743 bits (1921), Expect = 0.0
Identities = 293/393 (74%), Positives = 322/393 (81%), Gaps = 6/393 (1%)
Query: 24 SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 83
S G + PG + + A+ C C + + P + KKR+VSGVQ
Sbjct: 1 SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54
Query: 84 PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACG 143
PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR TAAIYLACG
Sbjct: 55 PTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACG 114
Query: 144 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 203
ID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVGV LLTYPV
Sbjct: 115 IDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPV 174
Query: 204 LMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL 263
LMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG++FKVPE L
Sbjct: 175 LMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEAL 234
Query: 264 IPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER 323
IPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS GLEFDN ER
Sbjct: 235 IPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPER 294
Query: 324 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 383
PECNNLLSIYQL++GKTK EV EC +M WG FKPLLTDALIEHL PIQVRYEEIMSD +
Sbjct: 295 PECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPS 354
Query: 384 YLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
YLD VL +GA AA+IAD TL NVYQAMGF++R
Sbjct: 355 YLDSVLKEGADAAAEIADRTLANVYQAMGFVQR 387
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 545 bits (1406), Expect = 0.0
Identities = 187/346 (54%), Positives = 239/346 (69%), Gaps = 17/346 (4%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 134
KKR++SG+QPTG +HLGNYLGAIKNW+ LQ+ YE F I DLHA+T+P D ++L + TRE
Sbjct: 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRE 60
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 194
AA YLACGID K+++FVQSHV H EL W+L+ TP+G L +M QFK+KS K ENV
Sbjct: 61 LAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK-QKENV 119
Query: 195 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 254
L TYPVLMA+DILLY++D VPVGEDQKQHLELTR++A R N LYG
Sbjct: 120 SAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGE----------- 168
Query: 255 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS-- 312
+F VPEPLIP GARVM L KMSKS P+D + INLLD IA KIK+ TDS
Sbjct: 169 -VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227
Query: 313 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN--WGTFKPLLTDALIEHLHP 370
+ +D +PE +NLL+IY +SG++ E+ E + +G FK L +A++E L P
Sbjct: 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAP 287
Query: 371 IQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
I+ RYEE+++D AYLD++LA+GA KA +A TL V +AMG LR+
Sbjct: 288 IRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVREAMGLLRK 333
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 398 bits (1024), Expect = e-138
Identities = 159/327 (48%), Positives = 200/327 (61%), Gaps = 23/327 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITLPYDT--QQLSKA 131
K R++SG+QP+G +HLGNYLGAI+NW+ LQ Y E FFI DLHAIT+ D + L +A
Sbjct: 5 KFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQA 64
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
TRE AA YLA G+D K+++F+QS V H EL WLLS T G L +M QFK+KS K G
Sbjct: 65 TREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG- 123
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 251
E++ + LLTYPVL A+DILLYQ+ VPVGEDQ QHLELTR++A R N+LYG
Sbjct: 124 ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGE-------- 175
Query: 252 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311
+F +PE LI AR+ L DG KMSKS P+ S I LLD I KIK+ TD
Sbjct: 176 ----VFPLPEALISKV-ARLPGL-DGPGKMSKSDPN--SAIFLLDDPKTIRKKIKKAATD 227
Query: 312 SSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHL 368
+E+ +PE NL IY + E+ E + + G K L +A+ E L
Sbjct: 228 GPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFL 287
Query: 369 HPIQVRYEEIMSDSAYLDKVLADGAAK 395
PIQ R EE+ D AYLD +L GA K
Sbjct: 288 KPIQERREELREDPAYLDDILRKGAEK 314
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 352 bits (906), Expect = e-120
Identities = 151/347 (43%), Positives = 191/347 (55%), Gaps = 29/347 (8%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATR 133
K R+++G+QP+G +HLG+YLGAI+ Q E I DLHAIT+ D L KA
Sbjct: 2 KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKQTDPDALRKARE 61
Query: 134 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 193
E AA YLA G+D K +F+QS H EL WLLS G L +M QFK+KS EN
Sbjct: 62 ELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQA---EN 118
Query: 194 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 253
V + LL+YPVL A+DILLYQ+D VPVG DQ QHLELTR+LAER N +
Sbjct: 119 VPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKF------------ 166
Query: 254 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 313
F PE LI R+M L+ KMSKS P+ S I L D I KI++ TD
Sbjct: 167 KNFFPKPESLISKFFPRLMGLSG--KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATDGG 222
Query: 314 AGLEFDNLERPECNNLLSIYQLISGKTK-----GEVAEECQN--MNWGTFKPLLTDALIE 366
F++ E+P NLL IYQ +S E+ E ++ + +G K L + L E
Sbjct: 223 RVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKKALIEVLQE 282
Query: 367 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 413
L IQ R EI LDK+L GA KA + A+ TL +VY+AMG
Sbjct: 283 FLKEIQERRAEI--AEEILDKILEPGAKKARETANKTLADVYKAMGL 327
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 346 bits (889), Expect = e-118
Identities = 128/297 (43%), Positives = 169/297 (56%), Gaps = 23/297 (7%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRE 134
R++SG+QP+GS+HLG+YLGA + W+ LQ + YE FFI DLHA+T+ D ++L + TRE
Sbjct: 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRE 60
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 194
A YLACG+D K+++F QS V H EL WLLS G L +M FK+KS A GE+V
Sbjct: 61 NAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKS--AQGESV 118
Query: 195 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 254
+ LLTYPVL A+DILLY++ VPVG DQ HLELTR++A R N LYG
Sbjct: 119 NIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGE----------- 167
Query: 255 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 314
IF P L+ GA + L KMSKS P+ + I L D I KI + TD
Sbjct: 168 -IFPKPAALLSK-GAFLPGLQGPSKKMSKSDPN--NAIFLTDSPKEIKKKIMKAATDGGR 223
Query: 315 GLEFDNLERPECNNLLSIYQLISGKTKGEVAE--ECQ--NMNWGTFKPLLTDALIEH 367
+ P +NL+ IY E+ E E + + +G K LL +A+ E
Sbjct: 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 264 bits (676), Expect = 3e-86
Identities = 95/306 (31%), Positives = 134/306 (43%), Gaps = 36/306 (11%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYD---TQQLSKAT 132
R+ +G PTG +HLG YL + + Q + +E F I DL AI ++L
Sbjct: 7 RVYTGFDPTGPLHLG-YLVPLMKLVQFQQAGHEVFFLIGDLTAIIGDPSKSEERKLLSRE 65
Query: 133 RETAAI--YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 190
LACG+D K+ + S H+EL WLL LN+M+QFK+ +
Sbjct: 66 EVLENAKAQLACGLDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFKDVKKRLK 125
Query: 191 -GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 249
+ + TYP+L A+DILL ++D P G DQ H+EL R+LA R N
Sbjct: 126 QNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV-------- 177
Query: 250 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 309
FK P L P +++ DG KMSKSA + S I L D K+ + KI++
Sbjct: 178 -------FKKPVGLTNP----LLTGLDGGKKMSKSAGN--SAIFLDDEKESVYKKIQKAY 224
Query: 310 TDSSAGLEFDNLERPECNN-LLSIYQLISGKTKGEVAEE----CQNMN--WGTFKPLLTD 362
TD + D E +N + I + GK AEE G K +
Sbjct: 225 TDPDREVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGDLKKAAAE 284
Query: 363 ALIEHL 368
A+ L
Sbjct: 285 AVNALL 290
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 263 bits (675), Expect = 1e-85
Identities = 116/345 (33%), Positives = 174/345 (50%), Gaps = 25/345 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR 133
K I++G +PTG +HLG+Y+G++KN +ALQN +E I D A+T + +++ +
Sbjct: 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNIL 61
Query: 134 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK-SHKAGGE 192
E A YLA GID +K+++F+QS + EL + + L + K + + K G
Sbjct: 62 EVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGR 121
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 252
++ LTYPV A+DI +++ VPVG+DQ +E TRE+ R N LY
Sbjct: 122 SIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLY----------- 170
Query: 253 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 312
G + PE L+P AG R+ L DG +KMSK S + I L D D I K+ TD
Sbjct: 171 GTDVLVEPEALLPEAG-RLPGL-DGKAKMSK---SLGNAIYLSDDADTIKKKVMSMYTD- 224
Query: 313 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG-----TFKPLLTDALIEH 367
+ ++ + E N + + K EVAE + G K L + L E
Sbjct: 225 PNHIRVEDPGKVEGNVVFTYLDAF-DPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQEL 283
Query: 368 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 412
L PI+ R E D Y+ ++L G+ KA ++A TL+ V AMG
Sbjct: 284 LAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKDAMG 328
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 242 bits (619), Expect = 2e-76
Identities = 124/400 (31%), Positives = 204/400 (51%), Gaps = 70/400 (17%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT-QQLSKATRE 134
R++SG++PTG +HLG+Y G +KNW+ LQ+ YE FF+ D HA+T Y+T + + K +
Sbjct: 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWD 62
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 194
+LA G+D ++A++F+QS V H EL LLS TP+GWL ++ +K++ K +++
Sbjct: 63 MVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDL 122
Query: 195 GV-ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK-------- 245
L YP+L ++DIL+Y++ VPVGEDQ H+E+TRE+A R N+LYG
Sbjct: 123 STYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREPGFEEKAEA 182
Query: 246 -WKKLGGRGGAIF---------------------------------------------KV 259
KKLG + ++ K+
Sbjct: 183 AIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242
Query: 260 ----PEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
P+ L+ A +++ L DG KMSKS + I L + + + KI+ TD +
Sbjct: 243 ILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARV 296
Query: 316 LEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQNMNWGTF--KPLLTDALIEHLHPIQ 372
D + PE + ++Q+ S + TK V + C++ G K + DA++ P++
Sbjct: 297 RRTDPGD-PEKCPVWQLHQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMR 355
Query: 373 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 412
R ++ D + + ++ADG KA +A T+ +V +AMG
Sbjct: 356 ERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMG 395
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 226 bits (577), Expect = 5e-71
Identities = 120/351 (34%), Positives = 188/351 (53%), Gaps = 34/351 (9%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKAT 132
+K +++G++PTG HLGNY+GAIK + + +YE L+FI D HA+ +D +Q T
Sbjct: 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYT 62
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKA 189
RE AA +L+ G+D + QS V EL W+LS TP G +N+ +K +++ +A
Sbjct: 63 REVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEA 122
Query: 190 G-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 244
G G N+G L TYP+LMA+DILL+Q+ VPVG+DQ QH+E+ R++A N+ +
Sbjct: 123 GLDLDAGVNMG--LYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFNHTF--- 177
Query: 245 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304
G F +PE +I ++ DG KMSKS + I L ++ +
Sbjct: 178 ---------GDTFTLPEYVI-QEEGAILPGLDG-RKMSKSY---GNVIPLFAEQEKLRKL 223
Query: 305 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEE--CQNMNWGTFKPLLTD 362
I + KTDSS E + PE + L +IY+ + + + + E + WG K L
Sbjct: 224 IFKIKTDSSLPNEPKD---PETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFR 280
Query: 363 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 413
+ L + +Y M++ + LD+ L GA +A +IA L + +A+GF
Sbjct: 281 VVDRELAGPREKYAMYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGF 331
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 188 bits (480), Expect = 2e-55
Identities = 121/349 (34%), Positives = 184/349 (52%), Gaps = 30/349 (8%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIA--LQNSYETLFFIVDLHAITLPYDTQQLSKATRE 134
R+++G+ TG+ HLGNY GAI+ IA Q E+ +F+ D HA+ D ++ ++T E
Sbjct: 4 RVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLE 63
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EKSHKAGG 191
AA +LA G+D + + + QS + EL WLL+ G LN+ +K +K+ AG
Sbjct: 64 IAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGE 123
Query: 192 E---NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
+ V L YPVLMA+DIL++ + VPVG DQ QH+E+ R++A+R N+LY
Sbjct: 124 DPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLY------- 176
Query: 249 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308
GG F +PE +I + A + L DG KMSKS + I L P++ + I
Sbjct: 177 ----GGEFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIFSI 227
Query: 309 KTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQNMNWGTFKPLLTDALIE 366
TDS A E + E + L +YQ + +T + WG K L + +
Sbjct: 228 VTDSRAPGE---PKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDR 284
Query: 367 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 415
L P++ RYE +++ A ++ +L GAAKA IA L + +A+G LR
Sbjct: 285 ELAPMRERYEALIARPADIEDILLAGAAKARRIATPFLAELREAVG-LR 332
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 124 bits (312), Expect = 7e-33
Identities = 63/314 (20%), Positives = 112/314 (35%), Gaps = 68/314 (21%)
Query: 78 IVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT----------LPYDT 125
+ G+ PT S+H+G+ +G + + Q++ + +F I I D
Sbjct: 2 LYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDP 60
Query: 126 QQLSKATRETAAIYLACGIDNS--KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMI 180
+++ + R AA YLA GI +A++F S AH++ + L + ++ +
Sbjct: 61 EEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKT 120
Query: 181 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----DFVPVGEDQKQHLELTRELAER 236
F+ +S + + TYP L A+D LL + D P G DQ ++ L RELA R
Sbjct: 121 SFQSRSEEG----ISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITLGRELARR 176
Query: 237 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 296
N F + E L P V L K KS +
Sbjct: 177 FN-----------------GFTIAEGLTIP---LVTKLDG--PKFGKSESGPKWLDTEKT 214
Query: 297 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN---- 352
S ++++I + + +K E+ Q
Sbjct: 215 SPYEFYQFWI--NAVDS--------------DVINILKYFTFLSKEEIERLEQEQYEAPG 258
Query: 353 WGTFKPLLTDALIE 366
+ + L + + +
Sbjct: 259 YRVAQKTLAEEVTK 272
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 76.4 bits (189), Expect = 2e-15
Identities = 82/329 (24%), Positives = 128/329 (38%), Gaps = 69/329 (20%)
Query: 78 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHA-ITLPYDTQQLSKATRET 135
+ +G P+G +H+G+ + Q ++ I D A ++ + E
Sbjct: 69 VYTGFMPSGPMHIGHKM-VFDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEY 127
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENV 194
+A G D K ++ QS +L A + K + F E G
Sbjct: 128 ILDLIALGFDPDKTEIYFQSENIKVYDL------AFELA---KKVNFSELKAIYGFTGET 178
Query: 195 GVALLTYPVLMASDILLYQSDF------VPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
+ + YP A+DIL Q + VPVG DQ H+ LTR++AER++ YG
Sbjct: 179 NIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYG------ 232
Query: 249 LGGRGGAIFKVPEPLIPPAG--ARVM-SLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 305
I P+ + M LT G KMS S P +S I L D + + KI
Sbjct: 233 --------------FIKPSSTYHKFMPGLTGG--KMSSSKP--ESAIYLTDDPETVKKKI 274
Query: 306 KRCKTDSSAGLEFDNLER-----PE-CNNLLSIYQLIS-------GKTKGEVAEECQN-- 350
+ T A LE +R P+ C +Y+L+ + K E+ EEC++
Sbjct: 275 MKALTGGRATLE---EQRKLGGEPDEC----VVYELLLYHLEEDDKELK-EIYEECRSGE 326
Query: 351 MNWGTFKPLLTDALIEHLHPIQVRYEEIM 379
+ G K + + E L Q + EE
Sbjct: 327 LLCGECKKEAAEKIAEFLKEHQEKREEAR 355
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 55.6 bits (135), Expect = 1e-08
Identities = 62/240 (25%), Positives = 95/240 (39%), Gaps = 49/240 (20%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRETAAI 138
G +P+G IHLG+ L K LQ + ++ + D HA + D +++ K +
Sbjct: 36 GFEPSGKIHLGHLLTMNK-LADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKV 94
Query: 139 YLACGIDNSKASVFV-----QSHVRAHVELMWLLSSATPIGWLNKMIQ-FKEKSHKAGGE 192
+ A G+D K FV Q + ++ L + T L + + + E
Sbjct: 95 FEALGLDPDKTE-FVLGSEFQLDKEYWLLVLKLAKNTT----LARARRSMTIMGRRM--E 147
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGG 251
V+ L YP++ +DI D G DQ K H+ L RE+ ++ Y
Sbjct: 148 EPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM-LAREVLPKLGY------------ 194
Query: 252 RGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 307
K P PL+ L G KMSKS P S I + D + I KIK+
Sbjct: 195 ------KKPVCIHTPLLT-------GLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKK 239
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 50.2 bits (120), Expect = 2e-07
Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 72/210 (34%)
Query: 78 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 137
SG+ P G +H+G+ + L +Y L + V
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDF-LAQAYRKLGYKV----------------------- 37
Query: 138 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 197
+A ID++ + ++ + + A W+ ++
Sbjct: 38 RCIAL-IDDAGGLIGDPANKK------GENAKAFVERWIERIK----------------E 74
Query: 198 LLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 254
+ Y L A+D LL + D G DQ H+EL EL ++
Sbjct: 75 DVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---------------- 118
Query: 255 AIFKVPEPLIPPAGARVMSLTDGLSKMSKS 284
P L RVM +KMSKS
Sbjct: 119 -GPARPFGLTFG---RVMG--ADGTKMSKS 142
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 50.1 bits (120), Expect = 9e-07
Identities = 61/290 (21%), Positives = 102/290 (35%), Gaps = 33/290 (11%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-ITLPYDTQQLSK-A 131
K ++ G PT S+HLG+ + +K Q +E + + D A I P + K
Sbjct: 30 KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLL 89
Query: 132 TRETAAIY-------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 184
TRE +A +D KA S + + + I +N+M++
Sbjct: 90 TREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDA 149
Query: 185 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 244
S + + ++ YP+L A D + D G DQ ++ R+L R
Sbjct: 150 FSSRL-ERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNILKGRDLIRRNL------ 202
Query: 245 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304
LG F + PL+ PA M ++G +S ++ D K
Sbjct: 203 --PSLG------FGLTVPLLTPADGEKMGKSEG-GAVSLDEGKYDFYQFWINTPDEDVKK 253
Query: 305 IKR--CKTDSSAGLEFDNLERP-----ECNNLLSIYQLISGKTKGEVAEE 347
I + L+ P + N I + + G+ AEE
Sbjct: 254 ILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAALAAEE 303
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 39.5 bits (93), Expect = 0.002
Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 55/250 (22%)
Query: 81 GVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-ITLPYDT----QQLSKATRE 134
G PT S+HLG+ + +K Q +E + I D A I P + L
Sbjct: 6 GFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIR 65
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELM----WLLSSATPIGWL-----------NKM 179
A Y + + + + WLLS + L N+M
Sbjct: 66 ENAKYYKKQLKA-----ILDFIPPEKAKFVNNSDWLLS----LYTLDFLRLGKHFTVNRM 116
Query: 180 IQFK-EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 238
++ K E + + YP+L A D + D G DQ+ ++ L R+L ++
Sbjct: 117 LRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLGRDLIRKLG 176
Query: 239 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 298
Y KK + + PL+ DG KMSKS + +LD
Sbjct: 177 Y-------KK-------VVGLTTPLLTGL--------DG-GKMSKSEG-NAIWDPVLDSP 212
Query: 299 DVIANKIKRC 308
+ KI+
Sbjct: 213 YDVYQKIRNA 222
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 38.0 bits (89), Expect = 0.008
Identities = 51/252 (20%), Positives = 94/252 (37%), Gaps = 48/252 (19%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPY-DTQQLSK 130
R+ G PT S+HLG+ + +K Q++ ++ + I D A I P +++
Sbjct: 32 PLRVYIGFDPTAPSLHLGHLVPLMK-LRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKL 90
Query: 131 ATRETAAIYLACGIDNSKA-----SVFVQSHVRAHVELMWLLSS--------ATPIGWLN 177
TRET +N++ F+ + WL +N
Sbjct: 91 LTRETVL-------ENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVN 143
Query: 178 KMIQFK-EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV-GEDQKQHLELTRELAE 235
+M++ K + + YP+L A D + Y + + + G DQ ++ R+L
Sbjct: 144 RMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV-YLNKDLQLGGSDQWGNILAGRDLIR 202
Query: 236 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-----DQS 290
R+ KK+ G + PL+ + M ++G + S + Q
Sbjct: 203 RLGQ-------KKVVG-------LTTPLLTGLDGKKMGKSEGGAVWLDSEKTSPYDFYQY 248
Query: 291 RINLLDPKDVIA 302
+N+ D DV
Sbjct: 249 WMNIED-ADVKR 259
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 36.4 bits (84), Expect = 0.025
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 35/239 (14%)
Query: 77 RIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAIT---LPYDTQQLSKAT 132
R G +P+G +H+ A+ Q E +F++ D A+ + + +++
Sbjct: 34 RCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVG 93
Query: 133 RETAAIYLACGIDNSKASVFVQS--HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 190
R ++ A G+D K +F+ S + H W IG N + + K K
Sbjct: 94 RYLIEVWKAAGMDMDKV-LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIK-KCCTIM 149
Query: 191 GENVGV---ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 247
G+ G A + YP++ +DI ++D +G DQ++ L RE + + GRK K
Sbjct: 150 GKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLI-----GRKLK 204
Query: 248 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306
P+I + + L G +KMSKS P S I + D ++ +A KI+
Sbjct: 205 --------------PVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIR 246
>gnl|CDD|225207 COG2326, COG2326, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 34.2 bits (79), Expect = 0.090
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 221 EDQKQHLELTRELAERVNYLYGGRKWKKL--------GGRGGAIFKVPEPLIPPAGARVM 272
ED ++ LEL + ++ + + G+GGAI ++ E L P GARV+
Sbjct: 48 EDYEKELELLQIELVKLQRWVAETGQRVVIVFEGRDAAGKGGAIKRITEAL-NPRGARVV 106
Query: 273 SLTDGLSKMSKSAPSDQSR 291
+L AP+D+ R
Sbjct: 107 ALP---------APTDRER 116
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 30.6 bits (69), Expect = 0.40
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 23/76 (30%)
Query: 209 ILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 268
+ D GED +Q+ EL R W K + PE + P
Sbjct: 52 KESIEEDISVCGEDFQQNRELYR--------------WVK---DNITLPVDPEQVELPRL 94
Query: 269 ARVMSLTDGLSKMSKS 284
+ MSK
Sbjct: 95 N------LETTVMSKR 104
Score = 29.4 bits (66), Expect = 1.3
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 78 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 137
+P G +H+G+ I + + + I D + + D +L +
Sbjct: 2 ARFPGEP-GYLHIGHAKL-ICRAKGIA--DQCVVRIDDNPPVKVWQDPHELEERKESIEE 57
Query: 138 IYLACGID 145
CG D
Sbjct: 58 DISVCGED 65
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 30.0 bits (68), Expect = 1.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 23/81 (28%)
Query: 221 EDQKQHLELTRELAE----------RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGAR 270
E + + +L EL + ++ ++ GR G+GGAI +V E L P G R
Sbjct: 6 EYEAELAKLQIELVKLQEWVYAEGKKLVVIFEGRD---AAGKGGAIKRVTEAL-NPRGYR 61
Query: 271 VMSLTDGLSKMSKSAPSDQSR 291
+++L AP+++ R
Sbjct: 62 IVALP---------APTEEER 73
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 30.4 bits (68), Expect = 2.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 360 LTDALIEHLHPIQVRYEEIMSDSAYLDKV----LADGAAKAADIADATLNNVYQAM 411
L D+ +++LH + +M+D+ ++ V + G+ KA DI DA L +Y +
Sbjct: 167 LIDSFMKNLHNVT---GVLMTDTDFVSAVKRNLFSHGSQKATDIMDAMLKKLYSVL 219
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form
a separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 29.5 bits (66), Expect = 3.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 75 KKRIVSGVQPTGSIHLGNY 93
+ SG+ P+G IH+GN+
Sbjct: 19 LYTVASGITPSGHIHIGNF 37
>gnl|CDD|237206 PRK12793, flaF, flagellar biosynthesis regulatory protein FlaF;
Reviewed.
Length = 115
Score = 28.0 bits (63), Expect = 3.5
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 372 QVRYEEIMSDSAYLDK------------VLADGAAKAADIADATLNNVYQAMGFLRR 416
Q Y E+M DS + +L AK A +A +A+ F RR
Sbjct: 3 QFSYAEVMEDSVASARERERQAFDRSIDLLEAARAKGAYSREAI-----EALYFTRR 54
>gnl|CDD|213852 TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family.
Members of this protein family are designated
polyphosphate kinase 2 (PPK2) after the characterized
protein in Pseudomonas aeruginosa. This family comprises
one of three well-separated clades in the larger family
described by pfam03976. PA0141 from this family has been
shown capable of operating in reverse, with GDP
preferred (over ADP) as a substrate, producing GTP (or
ATP) by transfer of a phosphate residue from
polyphosphate. Most species with a member of this family
also encode a polyphosphate kinase 1 (PPK1) [Central
intermediary metabolism, Phosphorus compounds].
Length = 230
Score = 28.7 bits (65), Expect = 5.2
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 21/79 (26%)
Query: 221 EDQKQHL--ELT------RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 272
E + + L EL +E R+ ++ GR G+GG I ++ E L P GARV+
Sbjct: 8 EAELERLQIELVKLQEWVKETGARIVIVFEGRD---AAGKGGTIKRITEHL-NPRGARVV 63
Query: 273 SLTDGLSKMSKSAPSDQSR 291
+L P+D+ R
Sbjct: 64 AL---------PKPTDRER 73
>gnl|CDD|184108 PRK13518, PRK13518, carboxylate-amine ligase; Provisional.
Length = 357
Score = 29.0 bits (65), Expect = 5.5
Identities = 10/38 (26%), Positives = 26/38 (68%)
Query: 135 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 172
TA +++ G+D++ +V++ + +R H+ ++ LS+ +P
Sbjct: 133 TAGLHVHVGVDDADKAVWIANELRWHLPILLALSANSP 170
>gnl|CDD|225566 COG3022, COG3022, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 253
Score = 28.4 bits (64), Expect = 6.1
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 255 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK-IKRCKTDSS 313
+ K+ L P + +M ++D K A + R + + A + I D
Sbjct: 33 ELLKILRKLSPNQISSLMKISD------KLAGLNAQRFQDWETQFTPARQAILAFNGDVY 86
Query: 314 AGLEFDNLERPECNNLLSIYQLISG 338
GL+ + L + L +++SG
Sbjct: 87 TGLDAETLSEKDQAYLQQHLRILSG 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,812,997
Number of extensions: 1976419
Number of successful extensions: 1595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1543
Number of HSP's successfully gapped: 39
Length of query: 416
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 317
Effective length of database: 6,546,556
Effective search space: 2075258252
Effective search space used: 2075258252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)