RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014899
(416 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 572 bits (1476), Expect = 0.0
Identities = 158/358 (44%), Positives = 217/358 (60%), Gaps = 15/358 (4%)
Query: 61 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 120
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 121 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 180
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 181 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 240
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 241 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 300
YG IFK+PEP IP AGARVMSL D KMSKS + + I LL+
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKS 227
Query: 301 IANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKP 358
+ KIKR TDS + +D ++ +NLL I ++G++ E+ + +G K
Sbjct: 228 VVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKG 287
Query: 359 LLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
+ DA+ L +Q RY D A L V+ +GAAKA A TL VY+A+GF+ +
Sbjct: 288 AVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEAIGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 567 bits (1465), Expect = 0.0
Identities = 147/350 (42%), Positives = 212/350 (60%), Gaps = 13/350 (3%)
Query: 70 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 129
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 130 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 189
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119
Query: 190 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 249
+V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175
Query: 250 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 309
IF +PEP IP ARVMSL D KMSKS + ++ I LL+ I KI + +
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQ 230
Query: 310 TDSSAGLE--FDNLERPECNNLLSIYQLISGKTKGEVAEECQNM-NWGTFKPLLTDALIE 366
TD+ +D + NL+ +Y +GKT E+ + + +G FK + +A++
Sbjct: 231 TDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVA 290
Query: 367 HLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
L P+Q Y+ I +D YL+ V+ DGA KA+ A TL VY A+GF+ R
Sbjct: 291 MLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 563 bits (1454), Expect = 0.0
Identities = 161/341 (47%), Positives = 211/341 (61%), Gaps = 15/341 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N Y G
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 288 HHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 565 bits (1458), Expect = 0.0
Identities = 157/348 (45%), Positives = 213/348 (61%), Gaps = 15/348 (4%)
Query: 69 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 128
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88
Query: 129 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 188
K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS
Sbjct: 89 RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N Y
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201
Query: 249 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308
IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD + KIK
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSA 254
Query: 309 KTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 368
TDS ++FD +P +NLL+IY ++ T E+ + + +G FK L + ++ L
Sbjct: 255 VTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNAL 314
Query: 369 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
PIQ RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 315 KPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 552 bits (1426), Expect = 0.0
Identities = 118/357 (33%), Positives = 180/357 (50%), Gaps = 28/357 (7%)
Query: 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 133
+ KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62
Query: 134 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 188
+ LA G+D KA +F+QS + H + +L+ + +G L +M QFK K +
Sbjct: 63 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+ +
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKF------- 175
Query: 249 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308
++P+ + R+M L D KMSKS+ + I L DPK+V+ KI++
Sbjct: 176 -----KLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQA 230
Query: 309 KTDSSAGLEFDNLERPECNNLLSIYQLISGKT---------KGEVAEECQNMNWGTFKPL 359
TDS + F + +P N+L+I + + + ++ ++ K
Sbjct: 231 TTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNA 290
Query: 360 LTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
LT+A + L IQ + E+I + + L G +A A TL Y G +
Sbjct: 291 LTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGFGLGSQ 345
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 514 bits (1327), Expect = 0.0
Identities = 110/341 (32%), Positives = 186/341 (54%), Gaps = 19/341 (5%)
Query: 73 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 132
S R+++G+QP+G +H+GNY GAIK + Q + FI + HA+T D ++L + +
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 192
+ AA +L+ GID K+ ++QS V+ +EL W+LS TP+G L + +K+K K G
Sbjct: 61 LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 252
+ L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW----------- 167
Query: 253 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 312
G IF +PE + A V+ DG +KMSK S Q+ I++ + + +I TDS
Sbjct: 168 -GEIFTLPEARVNEEVAVVVGT-DG-AKMSK---SYQNTIDIFSSEKTLKKQISSIVTDS 221
Query: 313 SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQ 372
+A + + E + ++ SG+ + ++ E +G FK L + + + +
Sbjct: 222 TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAR 281
Query: 373 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 413
+Y E++ ++L ++L GA KA IA + +Y+ +G
Sbjct: 282 EKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 510 bits (1316), Expect = 0.0
Identities = 141/348 (40%), Positives = 198/348 (56%), Gaps = 26/348 (7%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 131
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P D L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 251
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169
Query: 252 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311
G F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI+ D
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223
Query: 312 SSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGT--FKPLLTDALIEHL 368
+ + PE L + + K E + EE + GT K +L D L+E L
Sbjct: 224 -PQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEAL 282
Query: 369 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 416
PI+ R E + D Y+ L +GA +A +A AT+ V + +G L
Sbjct: 283 RPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 465 bits (1200), Expect = e-165
Identities = 100/365 (27%), Positives = 164/365 (44%), Gaps = 24/365 (6%)
Query: 56 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 115
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ+ E + D
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62
Query: 116 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 174
+ A+T +D +Q+ + A YLA G+D K + VQS V EL + +
Sbjct: 63 VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122
Query: 175 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 233
L + K + + G GE V YPV A+DI + + VPVG+DQ LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182
Query: 234 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 293
R N LY + P+ + R+ L DG +KMSKS + I
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIA 225
Query: 294 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG--EVAEECQN- 350
L D D +A K+ TD L + R E N + + + ++ +
Sbjct: 226 LGDSADEVARKVMGMYTD-PGHLRASDPGRVEGNPVFTFLDAFDPDPARVQALKDQYRAG 284
Query: 351 -MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 409
+ K L D L L PI+ R E D + + + +G A+ ++A TL V +
Sbjct: 285 GLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRR 344
Query: 410 AMGFL 414
AM
Sbjct: 345 AMRLF 349
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 446 bits (1150), Expect = e-157
Identities = 118/347 (34%), Positives = 176/347 (50%), Gaps = 26/347 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 132
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T Y D +L + T
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 191
R+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE +
Sbjct: 72 RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 251
+ L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181
Query: 252 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 311
+F PE ++ ++ DG KMSK S + INL + + I R TD
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DG-RKMSK---SYGNIINLEISEKELEQTILRMMTD 233
Query: 312 SSAGLEFDNLERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALIEH 367
A + + PE + +Q + V E C + K LL +
Sbjct: 234 -PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRK 292
Query: 368 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 414
L PI + +I D Y+D V+ +G KA ++A T+ V +AM +
Sbjct: 293 LAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 301 bits (771), Expect = 1e-99
Identities = 57/341 (16%), Positives = 111/341 (32%), Gaps = 29/341 (8%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATR 133
+ G + +G IHLG L A Q + +T F+ D H+ L
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 134 ET--------AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 185
G D K + S + + + + L+++++
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 186 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 245
+ GE + A L YP++ +DI G DQ++ + E+A+++ Y +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212
Query: 246 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 301
+KL + P P KMSKS P S + + D + I
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY--SAVFIHDSPEEI 270
Query: 302 ANKIKRCKTDSS------------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 349
K+++ + + + + ++ T E+ +
Sbjct: 271 RQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFEELKRDFA 330
Query: 350 N--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 388
++ K + + LI L PI+ +E+ + V
Sbjct: 331 EGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 299 bits (766), Expect = 3e-95
Identities = 63/369 (17%), Positives = 123/369 (33%), Gaps = 51/369 (13%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 130
R G +P+G +H+ + N + E +F++ D A+ + + +++
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99
Query: 131 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 188
R ++ A G+D K ++ + +H + W + + ++ + K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
+ A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212
Query: 249 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308
P L + L G +KMSKS P S I + D ++ +A KI++
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIRQA 256
Query: 309 KTD-----SSAGLEFDNLERPECNNLLSIY------------QLISGKTKGEVAE----- 346
+SA + + N + Y I G T +
Sbjct: 257 YCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAF 316
Query: 347 ECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 406
++ K L D + L P++ + L+ V + A T
Sbjct: 317 VSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRKDGATLPLAETALP 376
Query: 407 VYQAMGFLR 415
A
Sbjct: 377 AAPAKPHAC 385
Score = 220 bits (561), Expect = 3e-65
Identities = 44/370 (11%), Positives = 101/370 (27%), Gaps = 57/370 (15%)
Query: 48 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 106
+R TA A+ + + + + + K++IA
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415
Query: 107 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 163
+ D A+ + + +S A + A+ A G+ +S V + + +
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475
Query: 164 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 222
W+ L+ + + GGE + ++ + L+ V
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529
Query: 223 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 282
RE + + R+ +L + +
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAAPA 566
Query: 283 KSAPSDQSRINLLDPKDVIANKIKR--C--KTDSSAGLEFD----------NLERPECNN 328
+ L D I KIK+ +++ + ++ER E N
Sbjct: 567 VLGAD--DVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALSIERGEANG 624
Query: 329 LLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 386
Y T + +C + ++ K + L++ + + + +
Sbjct: 625 GNVSY-----NTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKKNMTVL 679
Query: 387 KVLADGAAKA 396
+ AK
Sbjct: 680 RNAEKKMAKK 689
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 284 bits (728), Expect = 3e-93
Identities = 56/341 (16%), Positives = 120/341 (35%), Gaps = 43/341 (12%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 130
K G +P+G +H+ L L ++ +F+I D A + D +++ K
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 131 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 188
++ +CG++ S + W L + +N+M + + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
+ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226
Query: 249 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308
+ + + + L +G KMSKS + S I + D + + KIK+
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDVNRKIKKA 273
Query: 309 KTDSSAGLEFDNLERPECNNLLSIYQLIS------------GKTKGEVAEECQN--MNWG 354
+E + + + + Y + T E+ + N ++
Sbjct: 274 YCP-PNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPL 332
Query: 355 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 395
K + + + L P++ ++ + L+++ K
Sbjct: 333 DLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVTK 373
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 277 bits (710), Expect = 7e-91
Identities = 56/334 (16%), Positives = 117/334 (35%), Gaps = 49/334 (14%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 130
+G +P+G IH+ L + N + + + +I D A + + D ++ +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 131 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 186
R ++ ACGI+ S +++E M ++ + I + + Q ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159
Query: 187 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 243
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212
Query: 244 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 303
+ I + +MSL+ KMSKS P I + D + ++
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKKMSKSDPQ--GAIFMDDTEQEVSE 253
Query: 304 KIKRCKTDSS-------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF 356
KI R +++ L NL + E+ +MN
Sbjct: 254 KISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCG----KIYTDIESIQEDFSSMNKREL 309
Query: 357 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 390
K + + + + ++ +++ L V +
Sbjct: 310 KTDVANYINTIIDLVREHFKKPELSE-LLSNVKS 342
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 255 bits (652), Expect = 1e-81
Identities = 53/351 (15%), Positives = 105/351 (29%), Gaps = 43/351 (12%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 131
+ +G P+G +H+G+ + W+ + I D + +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
+ +A G D K +F S E+ ++ + F E+S
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188
Query: 192 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 250
+ ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT-------- 236
Query: 251 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 310
+ +P SLT KMS S ++ I L D + + K+ +
Sbjct: 237 ------AALHSKFVP-------SLTSLSGKMSAS--KPETAIYLTDSPEDVEKKVWKFTL 281
Query: 311 DSSAGLEFDNLE---RPECNNLLSIYQLISGKTKGEVAE---ECQN--MNWGTFKPLLTD 362
+ E PE + ++ + ++ E C+N + G K L
Sbjct: 282 TGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLIS 341
Query: 363 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 413
+ E L Q R ++ + L +
Sbjct: 342 KIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLKRSHHHHHH 392
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 194 bits (494), Expect = 1e-57
Identities = 57/357 (15%), Positives = 116/357 (32%), Gaps = 50/357 (14%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 131
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
E A +ACG D +K F+ S + + I Q K
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223
Query: 192 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 240
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY- 282
Query: 241 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 300
P+P + + +L +KMS S P+ S I L D
Sbjct: 283 -------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAKQ 320
Query: 301 IANKIKRCKTDSSAGLEFD------NLERPECNNLLSIYQLISGKTKGEVAEECQN--MN 352
I K+ + + N + L+ + L ++ ++ + M
Sbjct: 321 IKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAML 379
Query: 353 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 409
G K L + L + Q R +E+ + + +A A ++ +
Sbjct: 380 TGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEHHHHH 436
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 180 bits (458), Expect = 7e-53
Identities = 47/349 (13%), Positives = 100/349 (28%), Gaps = 55/349 (15%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 131
+ +G P+ S+H+G+ + + W+ + + D +Q+
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 190
T E +A G D +F ++ M+ + + + + G
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189
Query: 191 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 238
+P + A+ +P DQ + LTR++A R+
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249
Query: 239 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 298
YL P + L+ KMS S + + L D +
Sbjct: 250 YLK------------------PAVIHSK---FFPGLSGPKGKMSSS---SGTAVLLTDTE 285
Query: 299 DVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLI--SGKTKGEVAEECQN--M 351
++ +KI + + ++ E + + + V +E +
Sbjct: 286 KMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRI 345
Query: 352 NWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIA 400
G K LL + + Q + + + + L
Sbjct: 346 MTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAAT 394
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 175 bits (445), Expect = 6e-51
Identities = 55/357 (15%), Positives = 112/357 (31%), Gaps = 62/357 (17%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 129
+ +G P+ S+H+G+ + + LQ++ + + D + ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132
Query: 130 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 188
E +ACG D +F + + + + + FK+ +
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 237
V +P + A+ VP DQ + + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 238 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 297
YL P + + SL +KMS S + S I + D
Sbjct: 245 GYLK------------------PSSIHSI---FLPSLQGSQTKMSASVQN--SSIFVNDN 281
Query: 298 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-----KTKGEVAEECQNMN 352
++ I NKI + E + ++ +Q + + E+ ++ +
Sbjct: 282 EESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGE 341
Query: 353 WGT--FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNV 407
+ K +L L++ Q E D V+A K+ + N
Sbjct: 342 MLSGEIKSILVQELVKLTKNHQKNREA------INDDVIAKFTNKSREQLLKLFINK 392
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 173 bits (440), Expect = 7e-50
Identities = 47/358 (13%), Positives = 102/358 (28%), Gaps = 59/358 (16%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 130
+ +G P+ S+HLG+ + + W+ + + D + +
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 131 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 188
RE A +A G D +F E + +S + F +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 237
+ + + + +P DQ + + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273
Query: 238 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 297
Y +P + +L +KMS S + + I + D
Sbjct: 274 KY--------------------SKPALLH-SRFFPALQGSTTKMSASDDT--TAIFMTDT 310
Query: 298 KDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN-- 350
I KI + + E P+ + E ++ ++
Sbjct: 311 PKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGE 370
Query: 351 MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA----YLDKVLADGAAKAADIADATL 404
+ G K L + L E + Q R ++ ++ K++ + T
Sbjct: 371 LLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTK 428
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 166 bits (422), Expect = 6e-47
Identities = 54/330 (16%), Positives = 110/330 (33%), Gaps = 52/330 (15%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 131
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 190
E A +ACG D +K +F + + + K + F + G
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269
Query: 191 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 239
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329
Query: 240 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 299
P+P + + +L +KMS S P+ S I L D
Sbjct: 330 --------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIFLTDTAK 366
Query: 300 VIANKIKRCKTDSSA------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--M 351
I K+ + N + L+ + L ++ ++ + M
Sbjct: 367 QIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKDYTSGAM 425
Query: 352 NWGTFKPLLTDALIEHLHPIQVRYEEIMSD 381
G K L + L + Q R +E+ +
Sbjct: 426 LTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 157 bits (397), Expect = 4e-44
Identities = 41/327 (12%), Positives = 100/327 (30%), Gaps = 53/327 (16%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 131
I P + L Y+ LQ+++ I L I + + SK
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140
Query: 132 TRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 190
+ + LA G + K ++ + + L+ AT + F+ +
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197
Query: 191 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLY 241
+ L P +M + + V Q + ++A +N+
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNF-- 250
Query: 242 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 301
+P + +++ L G++K + + I L D +
Sbjct: 251 ------------------IQPTV--LFHKMVPLLSGVTKFDIPSD--HNSILLSDNAKQV 288
Query: 302 ANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN--MNWG 354
KI + ++ + + + + + + S +V E+ + G
Sbjct: 289 ERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSG 348
Query: 355 TFKPLLTDALIEHLHPIQVRYEEIMSD 381
K +++ ++ + + + + I +
Sbjct: 349 ELKKIVSASMKDFIVAYDAKKKPITTA 375
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 147 bits (373), Expect = 1e-40
Identities = 47/326 (14%), Positives = 89/326 (27%), Gaps = 50/326 (15%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 131
+ +G P+ ++H+G+ + + ++ + I D + +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 190
RE + G D +F H E L ++K I E G
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212
Query: 191 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLYG 242
+ + + +P + F VP DQ L R+ A+ +
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK- 271
Query: 243 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 302
P + + L KMS S P+ S I L D +D I
Sbjct: 272 -----------------PSSIYVS---LLPDLKGVNRKMSASDPN--SSIYLDDAQDTIR 309
Query: 303 NKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGT 355
KI ++ E + + + + + +
Sbjct: 310 KKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKE 369
Query: 356 FKPLLTDALIEHLHPIQVRYEEIMSD 381
K + E + Q + + D
Sbjct: 370 MKEKCVVVIQEFVSRYQESRKRVTDD 395
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 106 bits (264), Expect = 3e-25
Identities = 63/361 (17%), Positives = 109/361 (30%), Gaps = 66/361 (18%)
Query: 75 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 130
I +G P+ G++HLG+ L I Y + D + + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 131 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 187
TRE +ACG D K +F+ S ++ L+ PI L F ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210
Query: 188 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 247
V +P + D +P + A+ V+ +K
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262
Query: 248 KLGGRGGAIFKVPEPL-----------IPPAGA--------------------------- 269
K + V E + +G
Sbjct: 263 KKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGK 322
Query: 270 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNL 329
+ L +KMS S P+ S I L D I NKI + S G + + R +L
Sbjct: 323 FLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKIN--RYAFSGGRDTEEEHRAFGADL 378
Query: 330 LSI----YQLISGKTKGEVAE---ECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMS 380
Y + K E+ + + + + G K L L + R +++ +
Sbjct: 379 SVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT 438
Query: 381 D 381
Sbjct: 439 T 439
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 88.3 bits (219), Expect = 2e-19
Identities = 64/341 (18%), Positives = 100/341 (29%), Gaps = 78/341 (22%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSKA 131
++ G PTG H G ++ K + E + DLHA + P +
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAK 99
Query: 132 TRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 186
E + + + K V S + ++ LS+ + K
Sbjct: 100 YYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ 159
Query: 187 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 246
N ++ L YP++ A D D G DQ++ L E + Y
Sbjct: 160 ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKK----- 210
Query: 247 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306
A P++P KMS S P S+I+LL+ + KI
Sbjct: 211 -------RAHLM--NPMVPG--------LAQGGKMSASDP--NSKIDLLEEPKQVKKKIN 251
Query: 307 RCKTDSSAGLEFDNLERPECNNLLSIYQLI--------SGKTKGEVAEECQNMNWGTF-- 356
F + E N LLS Q + G E + G
Sbjct: 252 SA---------FCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITY 302
Query: 357 --------------------KPLLTDALIEHLHPIQVRYEE 377
K + DA+ E L PI+ +
Sbjct: 303 KSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN 343
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 74.8 bits (184), Expect = 6e-15
Identities = 58/341 (17%), Positives = 112/341 (32%), Gaps = 78/341 (22%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 135
G +P+G H+G + K + L + + HA I D + A R
Sbjct: 41 GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98
Query: 136 AAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 192
+ A G+ + + + L+ ++ + + + + + +A
Sbjct: 99 RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY------------- 239
V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISS 216
Query: 240 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 299
L G + + G + KMSKS P ++ + ++D D
Sbjct: 217 LQGPGRMEASQGEIDDVLAEV-------------------KMSKSKP--ETAVFVVDSDD 255
Query: 300 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF--- 356
I KI++ + ++ + N +L I + I G + +G
Sbjct: 256 DIRRKIRKA---------YCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEY 306
Query: 357 --------------------KPLLTDALIEHLHPIQVRYEE 377
K + ++LIE + PI+
Sbjct: 307 TSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 73.4 bits (181), Expect = 1e-14
Identities = 66/332 (19%), Positives = 111/332 (33%), Gaps = 80/332 (24%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 132
+K G +P+G IHLG+YL K I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHK 188
++ A G+ +V + L L+ T + + ++ +
Sbjct: 87 DYNKKVFEAMGLKAK----YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE-- 140
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
EN VA + YP++ + D G +Q++ L REL
Sbjct: 141 --DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP------------- 185
Query: 249 LGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 304
K P++ G DG KMS S + I + D + I K
Sbjct: 186 ---------KKVVCIHNPVLT--G------LDGEGKMSSSKGNF---IAVDDSPEEIRAK 225
Query: 305 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------------SGKTKGEVAEECQN 350
IK+ + E N ++ I + T E
Sbjct: 226 IKKA---------YCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESL 276
Query: 351 MNWGTF-----KPLLTDALIEHLHPIQVRYEE 377
K + + LI+ L PI+ R E
Sbjct: 277 FKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 71.5 bits (176), Expect = 5e-14
Identities = 64/331 (19%), Positives = 118/331 (35%), Gaps = 75/331 (22%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 134
R G +P+G IHLG+ + K + LQ + +E + + D+HA + +++++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 135 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
+++A G+D S+A + S R +V + ++ T + + + +
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148
Query: 192 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 251
E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY------------ 196
Query: 252 RGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 307
P P++ DG KMS S + I++ DP + + KI++
Sbjct: 197 ------SSPVCLHTPILVG--------LDG-QKMSSS---KGNYISVRDPPEEVERKIRK 238
Query: 308 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF----------- 356
+ E N +L I + G++ E G
Sbjct: 239 A---------YCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAED 289
Query: 357 -----------KPLLTDALIEHLHPIQVRYE 376
K + L L + R
Sbjct: 290 FKSGQLHPLDLKIAVAKYLNMLLEDARKRLG 320
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 70.6 bits (173), Expect = 2e-13
Identities = 64/332 (19%), Positives = 106/332 (31%), Gaps = 71/332 (21%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAI----TLPYDTQQLSKA 131
+I G TG H+ ++ K + E DLHA P++ +L +
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSK-IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVS 95
Query: 132 TRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 186
E A+ + G+ K + + + ++ LSS K K
Sbjct: 96 YYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQ 155
Query: 187 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 246
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 156 ----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY------- 204
Query: 247 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 306
L+ P ++ G SKMS S S+I+LLD K+ + K+K
Sbjct: 205 -----------SKRVHLMNP----MVPGLTG-SKMSSSEEE--SKIDLLDRKEDVKKKLK 246
Query: 307 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF---------- 356
+ F E N +LS + + K E G
Sbjct: 247 KA---------FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEK 297
Query: 357 ------------KPLLTDALIEHLHPIQVRYE 376
K + AL + L PI+ ++
Sbjct: 298 DFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 1e-06
Identities = 73/475 (15%), Positives = 132/475 (27%), Gaps = 188/475 (39%)
Query: 53 FRCY--CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYL-----GAIKNWIA-LQ 104
+ Y + P ++S+ + V G+ L G ++ L+
Sbjct: 123 IKNYITARIMAKRPFDKKSNSA-----LFRAVG-EGNAQL--VAIFGGQGNTDDYFEELR 174
Query: 105 NSYET----LFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID--------NSK---- 148
+ Y+T + ++ A TL +L + T + ++ G++ ++
Sbjct: 175 DLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQ-GLNILEWLENPSNTPDKD 229
Query: 149 --ASVFV--------Q-SH--VRAHV------ELMWLLSSATPIG--------------W 175
S+ + Q +H V A + EL L AT W
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 176 LNKMIQFKEKSHKAGGENVGVALL---------TYPVLMASDILLYQSDFVPVGEDQ--- 223
+ F KA + +L YP +L D + E
Sbjct: 290 ES----FFVSVRKA------ITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNEGVPSP 337
Query: 224 --------KQHLELTRELAERVN-----------YLYGGRKWKKLGGRGGAIFKVPEPLI 264
++ ++ + + N L G K + G
Sbjct: 338 MLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG------------- 381
Query: 265 PPAGARVMSLTDGLS----KMSKSAPSDQSRINLLDPKDVIANK---------------- 304
PP SL GL+ K + DQSRI + K +N+
Sbjct: 382 PPQ-----SLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 305 IKRCKTD-SSAGLEFDN--LERPECNNLLSIYQLISGK----TKGEVAEECQNMNWGTFK 357
D + F+ ++ P +Y G G ++E
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIP-------VYDTFDGSDLRVLSGSISER---------- 478
Query: 358 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 412
+ D +I V++E A +L G A+ + T N G
Sbjct: 479 --IVDCIIRL----PVKWETTTQFKA--THILDFGPGGASGLGVLTHRNK-DGTG 524
Score = 37.0 bits (85), Expect = 0.012
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 68/176 (38%)
Query: 255 AIFKV--PEPLIPP----AG------------ARVMSLTDGLS-------KMSKSAPSDQ 289
A F+ + LIP AG A VMS+ + M + P D+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 290 S-----RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG-- 342
+ ++P V +A + L+ + + + +T
Sbjct: 1802 LGRSNYGMIAINPGRV------------AASFSQEALQY--------VVERVGKRTGWLV 1841
Query: 343 EVAEECQNMNW--------GTFKPLLTDALIEHLHPIQVRYEEI--MSDSAYLDKV 388
E+ N N G + L D + L+ I+++ +I + S L++V
Sbjct: 1842 EIV----NYNVENQQYVAAGDLRAL--DTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 28.5 bits (63), Expect = 5.9
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 342 GEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY---EEIMSDSAYLDKVLADGAAKAAD 398
G V+ + G F +L L E + Y +I + +A L + K +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 399 IADATLNNVYQAMGFLRR 416
+ + N A +R
Sbjct: 122 L----IKNYITARIMAKR 135
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 29.3 bits (66), Expect = 2.8
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 369 HPIQVRYEEIMSDSAYLDKVLADGAA-KAADIADATLNNV--YQAMGFL 414
+ ++V + + K L + ADI + V G +
Sbjct: 28 YGVEVEVQYVNFQD-IKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLI 75
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.1 bits (63), Expect = 5.4
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 199 LTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 258
L YP A D + ++D G DQ+ +L + RE+ YG
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRA----YGQSP----------QVC 218
Query: 259 VPEPLIPPAGARVMSLTDGLSKMSKSA 285
PL+ DG KMSKS
Sbjct: 219 FLMPLLVG--------LDGREKMSKSL 237
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 27.1 bits (61), Expect = 6.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 365 IEHLHPIQVRYEE 377
+E + I+VRY E
Sbjct: 1 MESVTRIKVRYAE 13
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 6.4
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 388 VLADGAAKA--ADIADATLNNVYQAMGFLRR 416
++A G KA + L N+ A+ +L
Sbjct: 212 LVATGVYKARDIKAPGSGLGNIVAALDYLTT 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,178,681
Number of extensions: 364028
Number of successful extensions: 769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 37
Length of query: 416
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 320
Effective length of database: 4,021,377
Effective search space: 1286840640
Effective search space used: 1286840640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)