RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014899
(416 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 301 bits (771), Expect = e-101
Identities = 156/340 (45%), Positives = 206/340 (60%), Gaps = 15/340 (4%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 135
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 136 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 195
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS + G
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121
Query: 196 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 255
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N R G
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167
Query: 256 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 315
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK TDS
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227
Query: 316 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 375
+ +D +P +NLL+IY +SG++ E+ + + +G FK L +IE L PIQ RY
Sbjct: 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERY 287
Query: 376 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 415
M LD+VL +GA KA +A + + QAMG R
Sbjct: 288 HHWMES-EELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 186 bits (474), Expect = 7e-56
Identities = 52/337 (15%), Positives = 104/337 (30%), Gaps = 50/337 (14%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAI-TLPYDTQQLSKA 131
+ +G P+ ++H+G+ + I W+ + + + D Q
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 132 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 191
E A +ACG D +K +F + I Q K
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKGIFGF--T 189
Query: 192 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 240
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 190 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP 249
Query: 241 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 300
P L +L +KMS S P S I L D
Sbjct: 250 K------------------PALLHST---FFPALQGAQTKMSASDP--NSSIFLTDTAKQ 286
Query: 301 IANKIKRCKTDSSAGLEFDNLERPECN-----NLLSIYQLISGKTKGEVAEECQN--MNW 353
I K+ + ++ + + + L ++ ++ + M
Sbjct: 287 IKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLT 346
Query: 354 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 390
G K L + L + Q R +E+ + + + +
Sbjct: 347 GELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFMT 381
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 173 bits (440), Expect = 2e-51
Identities = 50/337 (14%), Positives = 105/337 (31%), Gaps = 50/337 (14%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 134
+ +I G TG H+ ++ K L+ E DLHA R
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91
Query: 135 TAAI------YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 188
+ + G+ K + + E + + + + + + K
Sbjct: 92 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151
Query: 189 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 248
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR------ 204
Query: 249 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 308
+ + GL+ S+ ++S+I+LLD K+ + K+K+
Sbjct: 205 -------------------VHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKLKKA 245
Query: 309 KTDS-----------SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGT 355
+ + F + ++ ++ ++ G
Sbjct: 246 FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGD 305
Query: 356 FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 392
K + AL + L PI+ ++ ++ L K+ +
Sbjct: 306 LKNSVEVALNKLLDPIREKF-----NTPALKKLASAA 337
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 116 bits (290), Expect = 3e-30
Identities = 59/312 (18%), Positives = 110/312 (35%), Gaps = 46/312 (14%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKAT 132
+K G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 133 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 192
++ A G+ + + ++ L+ T + + ++ E
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL----IAREDE 142
Query: 193 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 252
N VA + YP++ +DI D G +Q++ L REL +
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVL------ 196
Query: 253 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 312
GL K + S + I + D + I KIK+ +
Sbjct: 197 -----------------------TGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPA 233
Query: 313 SA--------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTD 362
++ ++ + E+ +N ++ K + +
Sbjct: 234 GVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAE 293
Query: 363 ALIEHLHPIQVR 374
LI+ L PI+ R
Sbjct: 294 ELIKILEPIRKR 305
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 83.1 bits (204), Expect = 3e-18
Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 12/177 (6%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 133
+ G PT +HLG+ + K + ++ + I D + + ++
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92
Query: 134 ETAAIY-----------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 182
+ + S + ++ + + + +
Sbjct: 93 TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152
Query: 183 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 239
K G + + L YP A D + ++D G DQ+ +L + RE+
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 28.6 bits (63), Expect = 1.1
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 336 ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 370
+ + + + +NM W L ++ L
Sbjct: 189 VVAPSGDNITHKSENMKWYNGPTLE--EYLDQLEL 221
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.2 bits (61), Expect = 1.9
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 75 KKRIV--SGVQPTGSIHLGNYLGAIKNWI 101
K++ V SG+ P+G +H+GN+ +I
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYI 45
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.1 bits (58), Expect = 3.1
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 332 IYQLISG----KTKGEVAEECQNMNWGTFKPL--LTDALIEHLHPIQVRYEEIM 379
+Y I G ++ EV + M +PL L+ + HLH I+ EE M
Sbjct: 40 VYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGV--HLHTIEAPDEETM 91
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 26.7 bits (58), Expect = 4.5
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 84 PTGSIHLGNYLGAIKNWI 101
P+G +H G+ + A+ +++
Sbjct: 11 PSGELHFGSLIAALGSYL 28
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
synthase, synthetase domain {Escherichia coli [TaxId:
562]}
Length = 297
Score = 25.9 bits (57), Expect = 9.5
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 87 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRE-----TAAIYL 140
L N W+ ++ + + + I PY ++++ + T ++L
Sbjct: 13 GARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHL 72
Query: 141 AC 142
Sbjct: 73 MY 74
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 25.9 bits (56), Expect = 9.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 84 PTGSIHLGNYLGAIKNWI 101
PTG H+G A+ N+
Sbjct: 10 PTGDPHVGTAYIALFNYA 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,473,256
Number of extensions: 65994
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 12
Length of query: 416
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 328
Effective length of database: 1,199,356
Effective search space: 393388768
Effective search space used: 393388768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)