BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>014900
MATTTATLYHQLPSDIRLATCTLFRSFNHRHLLIPQCAGASSRPYFSRSTTPFRLLAFST
NANEPFVEKVSDKPPICSADELHYVSVANCDWRLALWRYNPPPQAPTRNHPLLLLSGVGT
NAIGYDLSPGSSFARYMAGQGFDTWILEVRGAGLSVRGSNLKEAQQSAHGVSEQMEAVAN
STTSEAFAKSATNGVYSADPQLTDFPGALSDSKISPVKKEDDLTRLATVWDESKLVTKLT
ETFMSLSERLSGFLSENQSKIMSAKLFDQISKLLEDSQLSEGFNEIRGKLSSLLERRQSS
AIAIQIRDLSQNLVNMIEEGQLSVSPQLFDLQERLFSTIDDFQKQLDLIVQYDWDFDHYL
EEDVPAAMEYIRAQSKPKDGKLLAIGHSMGGILLYAMLSRCGKIPSLAISNDITIT

High Scoring Gene Products

Symbol, full name Information P value
AT1G15060 protein from Arabidopsis thaliana 4.2e-117
AT1G73750 protein from Arabidopsis thaliana 1.6e-31
PFL_1870
Uncharacterized protein
protein from Pseudomonas protegens Pf-5 0.00091

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  014900
        (416 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2196179 - symbol:AT1G15060 species:3702 "Arabi...  1135  4.2e-117  2
TAIR|locus:2027784 - symbol:AT1G73750 "AT1G73750" species...   346  1.6e-31   1
UNIPROTKB|Q4KFJ4 - symbol:PFL_1870 "Uncharacterized prote...    98  0.00091   2


>TAIR|locus:2196179 [details] [associations]
            symbol:AT1G15060 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=IDA] EMBL:CP002684 GO:GO:0009507
            GO:GO:0016787 EMBL:AY090351 EMBL:BT001059 EMBL:AK176025
            IPI:IPI00544913 RefSeq:NP_172960.2 UniGene:At.41944
            ProteinModelPortal:Q8RX69 SMR:Q8RX69 PRIDE:Q8RX69
            EnsemblPlants:AT1G15060.1 GeneID:838071 KEGG:ath:AT1G15060
            TAIR:At1g15060 HOGENOM:HOG000238187 InParanoid:Q8RX69 OMA:PCITEFL
            PhylomeDB:Q8RX69 ProtClustDB:CLSN2680703 Genevestigator:Q8RX69
            InterPro:IPR016969 PIRSF:PIRSF031088 Uniprot:Q8RX69
        Length = 578

 Score = 1135 (404.6 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
 Identities = 242/381 (63%), Positives = 285/381 (74%)

Query:    40 ASSRPYFSRS-----TTP-FR--LLAFSTNANEPFVEKVSDKPPICSADELHYVSVANCD 91
             ASS  Y  RS     TTP FR         A      K+  KP +C+ADELHYVSV N D
Sbjct:    19 ASSTVYLHRSISTVTTTPSFRHRTTLLRPRAFSSSSVKLPTKPSLCTADELHYVSVPNTD 78

Query:    92 WRLALWRYNPPPQAPTRNHPLLLLSGVGTNAIGYDLSPGSSFARYMAGQGFDTWILEVRG 151
             WRLALWRY PPPQAPTRNHPLLLLSGVGTNAIGYDLSPG SFAR+M+GQGF+TWILEVRG
Sbjct:    79 WRLALWRYLPPPQAPTRNHPLLLLSGVGTNAIGYDLSPGCSFARHMSGQGFETWILEVRG 138

Query:   152 AGLSVRGSNLKEAQQSAHGVSEQMEAVANSTTSEAFAKSATNGVYSADPQLTDFPGALSD 211
             AGLS R S+LK+ ++SAH +S Q+E+     T+ A A   T    S + Q TD    + D
Sbjct:   139 AGLSTRVSDLKDVEESAHELSNQIES-----TARAAAGKET---CSDEKQTTD----IMD 186

Query:   212 SKISPVKKED-DLTRLATVWDESKLVTKLTETFMSLSERLSGFLSENQSKIMSAKLFDQI 270
             S  +P    D  +   A+ WDES+LV +LT TFMSLSERLSGFLSE QS  MSAKLFD+I
Sbjct:   187 SS-APAPASDVSVVGEASAWDESQLVARLTSTFMSLSERLSGFLSEGQSVFMSAKLFDKI 245

Query:   271 SKLLEDSQLSEGFNEIRGKLSSLLERRQSSAIAIQIRDLSQNLVNMIEEGQLSVSPQLFD 330
             + L++D+QL E FN+IR KL SL+E +Q+S +  Q+RDL+Q LVN+ ++GQ SVSP L D
Sbjct:   246 AMLVDDTQLYERFNDIRSKLLSLIESKQNSGLVNQVRDLAQRLVNLFDDGQRSVSPPLID 305

Query:   331 LQERLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRAQSKPKDGKLLAIGHSMG 390
             LQERL +TI+DFQKQLDLIV+YDWDFDHYLEEDVPAA+EY+RAQSKPKDGKL AIGHSMG
Sbjct:   306 LQERLTATIEDFQKQLDLIVKYDWDFDHYLEEDVPAAIEYVRAQSKPKDGKLFAIGHSMG 365

Query:   391 GILLYAMLSRC---GKIPSLA 408
             GILLYAMLSRC   G+ PS+A
Sbjct:   366 GILLYAMLSRCAFEGREPSVA 386

 Score = 39 (18.8 bits), Expect = 4.2e-117, Sum P(2) = 4.2e-117
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query:    18 LATCTLFRSFNHRHLLI-PQCAGASS 42
             ++T T   SF HR  L+ P+   +SS
Sbjct:    29 ISTVTTTPSFRHRTTLLRPRAFSSSS 54


>TAIR|locus:2027784 [details] [associations]
            symbol:AT1G73750 "AT1G73750" species:3702 "Arabidopsis
            thaliana" [GO:0015996 "chlorophyll catabolic process" evidence=RCA]
            EMBL:CP002684 InterPro:IPR016969 PIRSF:PIRSF031088 EMBL:AF419606
            EMBL:AY113044 IPI:IPI00529361 RefSeq:NP_565071.1 UniGene:At.27382
            ProteinModelPortal:Q8W568 PaxDb:Q8W568 PRIDE:Q8W568
            EnsemblPlants:AT1G73750.1 GeneID:843710 KEGG:ath:AT1G73750
            TAIR:At1g73750 eggNOG:NOG324581 OMA:PAETWIG PhylomeDB:Q8W568
            ProtClustDB:CLSN2917443 Genevestigator:Q8W568 Uniprot:Q8W568
        Length = 452

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 70/119 (58%), Positives = 83/119 (69%)

Query:    62 ANEPFVEKVSDKP--PICSADELHYVSVANCDWRLALWRYNPPPQAPTRNHPLLLLSGVG 119
             ++ P +  VS      IC+ADELHYV V N DWR+ALWRY P P+AP RNHPLLLLSG+G
Sbjct:    40 SSSPAITSVSRTTVNEICTADELHYVPVPNSDWRVALWRYLPSPKAPKRNHPLLLLSGIG 99

Query:   120 TNAIGYDLSPGSSFARYMAGQGFDTWILEVRGAGLSVRG--SNLKEAQQSAHGVSEQME 176
             TNA+ YDLSP  SFAR M+G GFDTWILE+RGAGLS     +NL +       VS  +E
Sbjct:   100 TNAVTYDLSPECSFARSMSGSGFDTWILELRGAGLSSLSVDTNLGKGNNQQRIVSNLLE 158

 Score = 295 (108.9 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 64/133 (48%), Positives = 93/133 (69%)

Query:   270 ISKLLEDSQLSEGFNEIRGKLSSLLERRQSSAIAIQIRDLSQNLVNMIEEGQLSVSPQLF 329
             +S L  D+ L +G N+ R  +S+LLE    + I++     S+ L N+++ G      ++ 
Sbjct:   134 LSSLSVDTNLGKGNNQQR-IVSNLLE----NFISV-----SERLENVLDGGS-----KIL 178

Query:   330 DLQERLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRAQSKPKDGKLLAIGHSM 389
              +Q+RL     DF+++ +LI  Y+WDFD+YLEEDVP+AM+Y+R Q+K KDGKLLA+GHSM
Sbjct:   179 GMQDRLSKRAGDFKQRFELIPHYNWDFDNYLEEDVPSAMDYVRTQTKSKDGKLLAVGHSM 238

Query:   390 GGILLYAMLSRCG 402
             GGILLYA+LSRCG
Sbjct:   239 GGILLYALLSRCG 251


>UNIPROTKB|Q4KFJ4 [details] [associations]
            symbol:PFL_1870 "Uncharacterized protein" species:220664
            "Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] EMBL:CP000076
            RefSeq:YP_258989.2 ProteinModelPortal:Q4KFJ4 GeneID:3479046
            KEGG:pfl:PFL_1870 PATRIC:19872975 eggNOG:NOG298534
            HOGENOM:HOG000247173 ProtClustDB:CLSK866771
            BioCyc:PFLU220664:GIX8-1879-MONOMER Uniprot:Q4KFJ4
        Length = 329

 Score = 98 (39.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query:    94 LALWRYNPPPQAPTRNHPLLLLSGVGTNAIGYDLSPGSSFARYMAGQGFDTWILEVRGAG 153
             LA+ R     +   R  P++LL G  +N   +    G     Y+A  GFD WI E+RG G
Sbjct:    40 LAVTRLGLADEPEARGIPVVLLHGSFSNRRFWYSPKGIGLGAYLARAGFDVWIPEMRGHG 99

Query:   154 LSVRGSNLKE 163
             LS R ++ ++
Sbjct:   100 LSRRNADYRK 109

 Score = 57 (25.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query:   359 YLEEDVPAAMEYIRAQSKPKDGKLLAIGHSMGGILLYAML 398
             Y   D+PA   ++R QS         IGHS+GG  L A L
Sbjct:   115 YARYDLPAIAAFVREQSVQVPHW---IGHSLGGTTLAAAL 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      416       416   0.00081  118 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  617 (66 KB)
  Total size of DFA:  249 KB (2134 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  40.83u 0.15s 40.98t   Elapsed:  00:00:01
  Total cpu time:  40.83u 0.15s 40.98t   Elapsed:  00:00:01
  Start:  Thu May  9 14:18:39 2013   End:  Thu May  9 14:18:40 2013

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