BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014900
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZI8|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant(E36d, C123s, A134s, S208g, A229v, K234r)- 1.4 A
Length = 236
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + S+
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVASK 135
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 209 LSDSKIS--PVKKEDDLTRLATVW-DESKLVTKLTETFMSLSERLSGFLSENQSKIMSAK 265
L+D+K+ P +L L T+W ++KL F L L NQ K + +
Sbjct: 68 LNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127
Query: 266 LFDQISKLLEDSQLSEGFNEIRG-------KLSSLLERR 297
+FD ++KL + LS G+NE++ KL+SL E R
Sbjct: 128 VFDSLTKL---TYLSLGYNELQSLPKGVFDKLTSLKELR 163
>pdb|1ZIX|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, R105h, C123s, G211d, K234n)- 1.8 A
Length = 236
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIHYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
>pdb|1ZI9|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(e36d, C123s) Mutant- 1.5 A
Length = 236
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 316 MIEEGQLSVSPQLFDLQE--RLFSTIDDFQKQLDLIVQYDWDFDHYLEEDVPAAMEYIRA 373
++++G +V P L+ Q D+ Q++ + +D + + D+ AA+ Y R
Sbjct: 51 LVDQGYAAVCPDLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVG-DLEAAIRYARH 109
Query: 374 QSKPKDGKLLAIGHSMGGILLYAMLSR 400
Q +GK+ +G+S+GG L + + ++
Sbjct: 110 QPY-SNGKVGLVGYSLGGALAFLVAAK 135
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 362 EDVPAAMEYIRAQSKPKDGKLLAIGHSMGGILLYAMLSR 400
+D AA EY++A+ + +L G S GG+L+ A++++
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQ 553
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 362 EDVPAAMEYIRAQSKPKDGKLLAIGHSMGGILLYAMLSR 400
+D AA EY++A+ + +L G S GG+L+ A++++
Sbjct: 515 DDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQ 553
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,663,830
Number of Sequences: 62578
Number of extensions: 464333
Number of successful extensions: 1276
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 29
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)