BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014900
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q88FY3|NICD_PSEPK N-formylmaleamate deformylase OS=Pseudomonas putida (strain KT2440)
GN=nicD PE=1 SV=1
Length = 268
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 108 RNHPLLLLSGVGTNAIGYDLSPGSSFARYMAGQGFDTWILEVRGAGLSVRGSNL 161
+ H L+L+ G+ + AI + F G FDT++L+VRG GLS G +L
Sbjct: 25 KGHALILVPGITSPAITW------GFVAERLGHYFDTYVLDVRGRGLSSSGPDL 72
>sp|Q9PY95|NSP3_ROTHC Non-structural protein 3 OS=Rotavirus C (isolate Human/United
Kingdom/Bristol/1989) PE=3 SV=1
Length = 402
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 50/227 (22%)
Query: 137 MAGQGFDTWILEVRGAGLSVRGSNLKEAQQSAHGVSEQMEAVANSTTSEAFAKSATN-GV 195
MA Q WI V G+ S S+L +A + A G SE + + + + GV
Sbjct: 1 MATQASVEWIFNVAGSAAS---SSLDKAIKDAGG-SENFSKYVITKFYDNYKDCIDDSGV 56
Query: 196 YSAD-PQLTDFPGALSDSKISPVKKEDDLTRLATVWDESKLVTKLTETFMSLSERLSGFL 254
Y+A + AL+D K++ + E+ T +AT+ S+L +L E + LS
Sbjct: 57 YNACIGRAKTIDKALNDPKVAE-RNEEWYTNVATI---SRLDLELAELKLMLS------- 105
Query: 255 SENQSKIMSAKLFDQISKLLEDSQLSEGFNEIRGKLSSLLERRQSSAIAIQIRDLSQNLV 314
+ E+ L+ F+ +R E+ +SS + + + QN V
Sbjct: 106 --------------NLGIKREERVLNSMFSVVR-------EKGRSSNVIM----MKQNAV 140
Query: 315 NMIEEGQLSVSPQ--------LFDLQERLFSTIDDFQKQLDLIVQYD 353
MIEEG+L + + L + E L ID F+K D+ + D
Sbjct: 141 KMIEEGKLKIKVERNETYTESLKNKIEELECIIDAFEKGKDITIDLD 187
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog
OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 99 YNPPPQAPT-------RNHPLLLLSGVGTNAIGYDLSPGSSFARYMAGQGFDTWILEVRG 151
Y PPP+ PT + P L G G Y + G ++ RY GQG DT + + G
Sbjct: 701 YTPPPEKPTTDLKKKYEDQPAFL-EGTGMQLHPYQIE-GINWLRYSWGQGIDTILADEMG 758
Query: 152 AGLSVR 157
G +++
Sbjct: 759 LGKTIQ 764
>sp|Q9VWE6|ELYS_DROME Protein ELYS homolog OS=Drosophila melanogaster GN=CG14215 PE=1
SV=2
Length = 2111
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 277 SQLSEGFNEIRGKLSSLLERRQSSAIAIQIRDLSQNLVNMIEEGQLSVSPQLFD---LQE 333
S+L G + G ERR+ ++ Q+R+L + ++E+G+ ++ + D E
Sbjct: 600 SELCHGIFDYGGYPLDQRERREFQVLSGQLRELVRLQSYIVEQGRRRLTSSILDDCRANE 659
Query: 334 RLFSTIDDFQKQLDLIVQYDWDFDH-------YLEEDVPAAMEYIRAQ----SKPKDGKL 382
R T+ ++Q+ L W DH +++ VP ++R Q K GK+
Sbjct: 660 RALKTVLEYQRVL------LWFIDHGLLPEGQHMDNLVPGEQAFVRLQHEYSEKRAQGKI 713
Query: 383 LAI 385
L I
Sbjct: 714 LYI 716
>sp|Q2M1P5|KIF7_HUMAN Kinesin-like protein KIF7 OS=Homo sapiens GN=KIF7 PE=1 SV=2
Length = 1343
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 34/167 (20%)
Query: 239 LTETFMSLSERLSGFLSENQSKIMSAKLFDQISKLLEDSQLSE-GFNEIRGKLSS----- 292
L++ M+L +LS +LS ++++ + K FD++ L E+ + F+E+ +L
Sbjct: 1077 LSQCEMNLMAKLS-YLSSSETRALLCKYFDKVVTLREEQHQQQIAFSELEMQLEEQQRLV 1135
Query: 293 -----LLERRQ---SSAIAIQIRDLSQNLVNMIEEGQLSVSPQLFDLQERLFSTIDDFQK 344
LER++ + +Q ++ QN+ ++++ + + L D + + + I +K
Sbjct: 1136 YWLEVALERQRLEMDRQLTLQQKEHEQNMQLLLQQSRDHLGEGLADSRRQYEARIQALEK 1195
Query: 345 QLDLIVQYDWDFDHYLEEDVPAAMEYIRAQSKPKDGKLLAIGHSMGG 391
+L +Y W I + K K G + A+GHS GG
Sbjct: 1196 ELG---RYMW----------------INQELKQKLGGVNAVGHSRGG 1223
>sp|Q3URY2|GEMC1_MOUSE Geminin coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Gmnc PE=2 SV=1
Length = 333
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 230 WDESKLVTKL------TETFMSLSERLSGFLSENQ------SKIMSAKLFDQISKLLEDS 277
W+E++L ++L +T + E L+ EN + + +L ++ KLL
Sbjct: 75 WEEAQLSSQLYRNKQLQDTLLQKEEELARLHEENNHLRQYLNSTLVKRLEEKAKKLLSSD 134
Query: 278 QLSEGFNEIRGKLSSLLERRQSSAIAIQI----RDLSQNLVNMIEEGQLSVSPQLFD-LQ 332
+ S+ F ++R + E R S A Q R+LS N E+ V P + L
Sbjct: 135 EFSKVFGKLRKEKRKPKEHRHSPAEIPQFKTAKRNLSTEFSNCEEQPGPHVDPWVLQTLG 194
Query: 333 ERLFSTIDD 341
+ +TIDD
Sbjct: 195 LKDLNTIDD 203
>sp|Q67ZU1|LIP2_ARATH Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1
Length = 418
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 108 RNHPLLLLSGVGTNAIGYDLSPG-SSFARYMAGQGFDTWILEVRGAGLSVRGSNLKEAQQ 166
+ P+L+ G+ + + + L+P + +A QGFD W+ RG S R L +Q+
Sbjct: 95 KRQPVLIQHGILVDGMSWLLNPADQNLPLILADQGFDVWMGNTRGTRFSRRHKYLNPSQR 154
Query: 167 S 167
+
Sbjct: 155 A 155
>sp|Q9VUY8|STRUM_DROME WASH complex subunit strumpellin homolog OS=Drosophila melanogaster
GN=CG12272 PE=2 SV=1
Length = 1191
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 270 ISKLLEDSQLSEGFNEIRGKLSSL-LERRQSSA-IAIQIR----DLSQ--NL-VNMIEEG 320
+SK+ ++ QL + F E+ G+L L L R Q S + IQ+ D+ + NL NM+ +
Sbjct: 483 LSKIEQNPQLQQWFGEVAGRLQKLELSRPQKSGRLIIQVMQALDDVQEYHNLHSNMLVKQ 542
Query: 321 QLSVSPQLFDLQERLFSTIDDFQKQLDLIVQYDWDFDHYLEED-VPAAMEYIRAQSKPKD 379
QL + + + +L + +D + + +I + + + H L+ D P E+I+ Q +
Sbjct: 543 QLQETRDMLNQMAQLINLKEDIEIHIQMITDFSYAW-HLLQFDFTPPMQEHIKRQPQAVI 601
Query: 380 G 380
G
Sbjct: 602 G 602
>sp|Q5BIM1|TRI45_BOVIN Tripartite motif-containing protein 45 OS=Bos taurus GN=TRIM45 PE=2
SV=1
Length = 580
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 265 KLFDQISKLLEDSQ-----LSEGFNEIRGKLSSLLERRQSSAIAIQIRDLSQNLVNMIEE 319
K D + +LL +Q L E +I+G S++ ER + A+A IR S+ + IEE
Sbjct: 233 KHGDSVRELLRGTQPHVEALEEALAQIKGTNSAVQERVK--AVAADIRTFSEGYIKAIEE 290
Query: 320 GQLSVSPQLFDLQERLFSTIDDFQKQLDLIV 350
+ + QL D++ + +++ + QL+ ++
Sbjct: 291 HRDKLLKQLEDIRVQKENSLQLQKAQLEQLL 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,575,459
Number of Sequences: 539616
Number of extensions: 6031945
Number of successful extensions: 19247
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 19217
Number of HSP's gapped (non-prelim): 93
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)