Query 014901
Match_columns 416
No_of_seqs 208 out of 566
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4498 Uncharacterized conser 100.0 1.6E-29 3.6E-34 233.8 10.9 160 232-399 36-196 (197)
2 COG1225 Bcp Peroxiredoxin [Pos 99.9 7E-24 1.5E-28 193.0 14.1 151 199-401 3-156 (157)
3 cd02970 PRX_like2 Peroxiredoxi 99.9 6.2E-24 1.4E-28 183.9 12.2 138 234-382 11-149 (149)
4 PTZ00137 2-Cys peroxiredoxin; 99.8 2.5E-19 5.4E-24 175.1 15.9 153 198-402 66-226 (261)
5 TIGR03137 AhpC peroxiredoxin. 99.8 3.5E-19 7.6E-24 164.7 14.5 148 201-402 3-157 (187)
6 PRK10382 alkyl hydroperoxide r 99.8 6.4E-19 1.4E-23 164.2 14.8 150 201-402 3-157 (187)
7 PRK13191 putative peroxiredoxi 99.8 7.7E-19 1.7E-23 166.7 15.6 150 199-402 6-162 (215)
8 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 2.7E-19 5.9E-24 152.2 10.4 109 268-383 1-115 (115)
9 cd03016 PRX_1cys Peroxiredoxin 99.8 1.1E-18 2.4E-23 163.4 14.9 136 235-404 15-157 (203)
10 PRK15000 peroxidase; Provision 99.8 1.4E-18 3.1E-23 163.0 15.4 162 201-414 3-185 (200)
11 cd03013 PRX5_like Peroxiredoxi 99.8 9.7E-19 2.1E-23 157.6 12.8 139 202-386 1-144 (155)
12 PRK00522 tpx lipid hydroperoxi 99.8 1.9E-18 4.1E-23 156.9 14.8 150 197-399 15-167 (167)
13 PRK13190 putative peroxiredoxi 99.8 1.9E-18 4.1E-23 162.1 15.0 147 200-402 2-155 (202)
14 cd03018 PRX_AhpE_like Peroxire 99.8 1.5E-18 3.2E-23 151.5 13.4 129 234-396 16-149 (149)
15 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 7.3E-19 1.6E-23 148.1 11.0 123 202-378 1-124 (124)
16 cd03015 PRX_Typ2cys Peroxiredo 99.8 3.1E-18 6.7E-23 155.4 15.3 151 202-403 1-159 (173)
17 PRK13599 putative peroxiredoxi 99.8 2.8E-18 6.1E-23 163.0 15.1 150 201-404 3-159 (215)
18 PRK13189 peroxiredoxin; Provis 99.8 4.4E-18 9.5E-23 162.2 15.4 151 200-404 9-166 (222)
19 cd03014 PRX_Atyp2cys Peroxired 99.8 5.6E-18 1.2E-22 147.7 13.4 139 202-396 2-143 (143)
20 PRK09437 bcp thioredoxin-depen 99.7 2.1E-17 4.5E-22 146.3 14.4 150 199-398 3-153 (154)
21 cd02971 PRX_family Peroxiredox 99.7 1.7E-17 3.6E-22 142.9 13.3 127 234-393 11-139 (140)
22 cd03017 PRX_BCP Peroxiredoxin 99.7 2E-17 4.3E-22 142.7 12.6 127 234-394 12-139 (140)
23 PTZ00253 tryparedoxin peroxida 99.7 1.2E-16 2.6E-21 148.9 15.1 153 199-402 5-165 (199)
24 PF08534 Redoxin: Redoxin; In 99.7 1.7E-16 3.8E-21 138.5 12.6 145 201-394 1-146 (146)
25 cd02969 PRX_like1 Peroxiredoxi 99.6 3.8E-14 8.1E-19 127.9 14.2 134 234-408 13-159 (171)
26 COG0450 AhpC Peroxiredoxin [Po 99.6 3.1E-14 6.6E-19 133.5 13.5 161 200-414 3-184 (194)
27 KOG0855 Alkyl hydroperoxide re 99.6 1.9E-14 4.2E-19 132.2 11.3 147 199-398 62-209 (211)
28 PRK03147 thiol-disulfide oxido 99.5 1.1E-13 2.3E-18 123.7 13.8 139 198-401 33-172 (173)
29 cd03012 TlpA_like_DipZ_like Tl 99.5 3.4E-14 7.3E-19 122.2 9.9 106 235-382 13-125 (126)
30 PLN02412 probable glutathione 99.5 1.3E-12 2.9E-17 118.8 14.2 136 234-403 18-166 (167)
31 PRK15412 thiol:disulfide inter 99.4 2.4E-12 5.2E-17 118.7 13.9 122 200-382 39-162 (185)
32 TIGR00385 dsbE periplasmic pro 99.4 2.1E-12 4.6E-17 117.6 13.1 136 199-400 33-170 (173)
33 TIGR02661 MauD methylamine deh 99.4 2.1E-12 4.6E-17 119.7 12.2 139 198-403 44-184 (189)
34 PTZ00056 glutathione peroxidas 99.4 8.6E-12 1.9E-16 117.1 13.9 136 234-401 28-178 (199)
35 cd02968 SCO SCO (an acronym fo 99.4 3.5E-12 7.6E-17 110.2 9.3 119 234-380 11-141 (142)
36 PTZ00256 glutathione peroxidas 99.3 1.5E-11 3.2E-16 113.4 13.1 132 234-399 29-179 (183)
37 PLN02399 phospholipid hydroper 99.3 1.4E-11 2.9E-16 119.3 12.5 152 195-400 68-233 (236)
38 cd03010 TlpA_like_DsbE TlpA-li 99.3 2.1E-11 4.6E-16 104.2 10.9 104 235-382 15-120 (127)
39 cd00340 GSH_Peroxidase Glutath 99.3 6.8E-12 1.5E-16 111.7 8.1 119 234-382 11-142 (152)
40 TIGR02540 gpx7 putative glutat 99.2 4.1E-11 8.8E-16 106.7 10.3 126 233-400 10-152 (153)
41 cd02967 mauD Methylamine utili 99.2 4.6E-11 1E-15 99.7 9.9 102 234-379 9-112 (114)
42 cd02966 TlpA_like_family TlpA- 99.2 7.8E-11 1.7E-15 95.0 10.2 105 234-380 8-115 (116)
43 KOG0854 Alkyl hydroperoxide re 99.2 3.1E-10 6.8E-15 105.5 14.7 143 235-405 21-172 (224)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 1.2E-09 2.5E-14 92.5 11.3 101 234-382 9-112 (123)
45 KOG0852 Alkyl hydroperoxide re 99.0 3.2E-09 6.9E-14 98.6 11.5 149 230-414 18-184 (196)
46 cd03009 TryX_like_TryX_NRX Try 98.9 2.9E-09 6.2E-14 91.7 8.1 87 232-321 5-97 (131)
47 PRK14018 trifunctional thiored 98.9 1.3E-08 2.8E-13 108.5 13.4 117 234-398 47-170 (521)
48 cd02964 TryX_like_family Trypa 98.8 2.6E-08 5.7E-13 86.4 8.4 63 236-300 8-72 (132)
49 cd03008 TryX_like_RdCVF Trypar 98.7 6.2E-08 1.3E-12 87.7 8.6 102 236-378 16-128 (146)
50 PRK13728 conjugal transfer pro 98.6 3.6E-07 7.9E-12 85.6 12.3 107 234-400 62-170 (181)
51 PRK10606 btuE putative glutath 98.6 3.2E-07 6.9E-12 85.8 9.8 82 234-319 14-111 (183)
52 PLN02919 haloacid dehalogenase 98.6 5.2E-07 1.1E-11 103.5 13.0 121 234-397 408-535 (1057)
53 TIGR01626 ytfJ_HI0045 conserve 98.5 5E-07 1.1E-11 84.8 9.8 119 235-400 49-182 (184)
54 PF13905 Thioredoxin_8: Thiore 98.2 1.1E-05 2.4E-10 65.3 9.3 62 248-309 2-65 (95)
55 COG2077 Tpx Peroxiredoxin [Pos 98.2 1.6E-05 3.4E-10 72.7 10.5 140 197-389 15-157 (158)
56 TIGR02740 TraF-like TraF-like 97.9 7.4E-05 1.6E-09 73.8 11.3 109 235-401 156-264 (271)
57 TIGR02738 TrbB type-F conjugat 97.9 0.00011 2.4E-09 66.9 10.3 48 234-290 43-90 (153)
58 PF05988 DUF899: Bacterial pro 97.8 0.00012 2.7E-09 70.2 10.1 85 237-322 57-148 (211)
59 PF13098 Thioredoxin_2: Thiore 97.5 0.00023 4.9E-09 59.3 6.3 45 246-292 5-52 (112)
60 cd02951 SoxW SoxW family; SoxW 97.2 0.0024 5.3E-08 54.6 9.4 110 242-403 8-121 (125)
61 cd02950 TxlA TRX-like protein 97.0 0.0012 2.6E-08 58.9 5.6 79 235-314 8-88 (142)
62 COG4312 Uncharacterized protei 96.9 0.0015 3.3E-08 63.2 5.8 86 235-321 61-153 (247)
63 COG1999 Uncharacterized protei 96.9 0.022 4.8E-07 54.3 13.1 137 232-402 54-205 (207)
64 KOG2501 Thioredoxin, nucleored 96.9 0.0011 2.4E-08 61.1 4.1 71 228-299 15-87 (157)
65 PF02630 SCO1-SenC: SCO1/SenC; 96.7 0.0084 1.8E-07 55.3 9.0 66 232-300 39-111 (174)
66 cd02999 PDI_a_ERp44_like PDIa 96.5 0.0027 5.9E-08 53.1 3.5 70 240-312 12-82 (100)
67 PF13728 TraF: F plasmid trans 96.5 0.012 2.5E-07 56.6 8.2 48 239-291 114-161 (215)
68 cd03005 PDI_a_ERp46 PDIa famil 96.4 0.004 8.6E-08 50.5 4.0 73 240-313 10-84 (102)
69 cd02993 PDI_a_APS_reductase PD 96.4 0.0099 2.2E-07 50.0 6.5 67 246-313 21-89 (109)
70 cd02947 TRX_family TRX family; 96.1 0.017 3.7E-07 44.4 6.0 64 247-313 11-74 (93)
71 KOG0541 Alkyl hydroperoxide re 96.1 0.026 5.7E-07 52.3 8.0 87 235-322 32-123 (171)
72 cd02949 TRX_NTR TRX domain, no 96.1 0.016 3.5E-07 47.5 6.0 73 242-315 8-80 (97)
73 cd02948 TRX_NDPK TRX domain, T 96.0 0.0061 1.3E-07 50.8 3.2 75 241-316 11-85 (102)
74 PF00085 Thioredoxin: Thioredo 96.0 0.025 5.5E-07 45.4 6.7 69 246-316 17-85 (103)
75 COG0678 AHP1 Peroxiredoxin [Po 96.0 0.01 2.2E-07 54.6 4.9 86 236-322 27-117 (165)
76 cd02953 DsbDgamma DsbD gamma f 95.8 0.016 3.5E-07 47.8 4.8 67 244-311 8-81 (104)
77 cd02961 PDI_a_family Protein D 95.7 0.019 4.2E-07 45.2 4.7 72 240-312 8-81 (101)
78 cd02963 TRX_DnaJ TRX domain, D 95.5 0.038 8.3E-07 46.8 6.3 66 247-312 24-89 (111)
79 cd02998 PDI_a_ERp38 PDIa famil 95.5 0.036 7.8E-07 44.8 5.9 64 248-312 20-85 (105)
80 cd01659 TRX_superfamily Thiore 95.4 0.046 1E-06 37.8 5.4 59 252-312 2-63 (69)
81 PRK10996 thioredoxin 2; Provis 95.3 0.025 5.3E-07 50.2 4.8 77 238-315 43-119 (139)
82 cd02959 ERp19 Endoplasmic reti 95.3 0.03 6.5E-07 48.4 5.1 71 245-317 18-91 (117)
83 cd00166 SAM Sterile alpha moti 95.3 0.0083 1.8E-07 44.9 1.4 52 54-106 5-57 (63)
84 PRK09381 trxA thioredoxin; Pro 95.3 0.021 4.6E-07 47.4 3.9 69 246-316 21-89 (109)
85 PTZ00051 thioredoxin; Provisio 95.3 0.015 3.3E-07 47.1 2.9 69 240-310 11-79 (98)
86 COG0526 TrxA Thiol-disulfide i 95.2 0.018 4E-07 44.8 3.2 42 246-289 32-73 (127)
87 cd02997 PDI_a_PDIR PDIa family 95.2 0.02 4.4E-07 46.4 3.4 39 240-278 10-48 (104)
88 TIGR02739 TraF type-F conjugat 95.2 0.072 1.6E-06 52.8 7.9 50 237-291 142-191 (256)
89 TIGR01126 pdi_dom protein disu 95.2 0.029 6.3E-07 45.1 4.3 76 241-316 7-83 (102)
90 cd02956 ybbN ybbN protein fami 95.1 0.037 7.9E-07 44.7 4.7 67 248-315 13-79 (96)
91 PF00536 SAM_1: SAM domain (St 95.1 0.011 2.4E-07 45.2 1.6 53 53-106 5-58 (64)
92 cd03000 PDI_a_TMX3 PDIa family 95.1 0.056 1.2E-06 44.8 5.9 65 246-310 14-80 (104)
93 cd03002 PDI_a_MPD1_like PDI fa 95.1 0.058 1.3E-06 44.4 5.9 66 247-313 18-85 (109)
94 cd02996 PDI_a_ERp44 PDIa famil 95.0 0.062 1.3E-06 44.7 6.0 39 240-278 11-49 (108)
95 cd02984 TRX_PICOT TRX domain, 95.0 0.022 4.8E-07 45.9 3.1 65 247-313 15-79 (97)
96 TIGR01068 thioredoxin thioredo 94.8 0.039 8.4E-07 44.0 4.2 67 247-315 15-81 (101)
97 cd03003 PDI_a_ERdj5_N PDIa fam 94.8 0.056 1.2E-06 44.3 5.2 49 242-291 13-61 (101)
98 TIGR01295 PedC_BrcD bacterioci 94.8 0.029 6.2E-07 49.0 3.6 47 240-289 16-62 (122)
99 PF13899 Thioredoxin_7: Thiore 94.5 0.08 1.7E-06 42.4 5.2 64 245-311 16-82 (82)
100 cd03001 PDI_a_P5 PDIa family, 94.1 0.17 3.6E-06 41.0 6.4 63 248-312 20-82 (103)
101 cd02995 PDI_a_PDI_a'_C PDIa fa 94.0 0.15 3.3E-06 41.1 5.9 43 248-290 19-62 (104)
102 COG0386 BtuE Glutathione perox 93.9 0.53 1.2E-05 43.7 9.8 73 234-310 14-96 (162)
103 cd02985 TRX_CDSP32 TRX family, 93.8 0.19 4.1E-06 41.9 6.2 42 247-290 15-56 (103)
104 cd02994 PDI_a_TMX PDIa family, 93.6 0.22 4.7E-06 40.7 6.1 48 241-290 12-59 (101)
105 cd03004 PDI_a_ERdj5_C PDIa fam 93.5 0.18 3.8E-06 41.4 5.6 63 249-312 21-83 (104)
106 PRK13703 conjugal pilus assemb 92.9 0.22 4.9E-06 49.1 6.2 47 239-290 137-183 (248)
107 cd03006 PDI_a_EFP1_N PDIa fami 92.7 0.3 6.4E-06 42.3 5.9 66 244-310 26-93 (113)
108 cd02952 TRP14_like Human TRX-r 92.1 0.16 3.4E-06 44.7 3.5 42 246-288 21-68 (119)
109 TIGR01130 ER_PDI_fam protein d 92.1 0.27 5.9E-06 50.2 5.8 65 240-304 11-77 (462)
110 cd02962 TMX2 TMX2 family; comp 91.9 0.4 8.6E-06 43.8 6.1 73 248-320 48-126 (152)
111 cd02975 PfPDO_like_N Pyrococcu 91.8 0.53 1.1E-05 40.2 6.4 62 248-311 23-84 (113)
112 TIGR00411 redox_disulf_1 small 91.8 0.4 8.6E-06 37.3 5.2 39 250-289 2-40 (82)
113 PF07647 SAM_2: SAM domain (St 91.7 0.067 1.5E-06 41.0 0.7 52 54-106 7-60 (66)
114 PTZ00102 disulphide isomerase; 91.5 0.36 7.8E-06 50.1 6.0 74 240-313 42-117 (477)
115 KOG2792 Putative cytochrome C 91.3 2.3 4.9E-05 42.7 10.9 57 231-289 125-185 (280)
116 cd02955 SSP411 TRX domain, SSP 91.1 0.4 8.8E-06 42.3 5.1 75 244-318 12-97 (124)
117 PTZ00443 Thioredoxin domain-co 90.5 0.59 1.3E-05 45.4 6.0 65 246-312 52-116 (224)
118 cd02989 Phd_like_TxnDC9 Phosdu 90.1 0.35 7.6E-06 41.4 3.7 77 243-321 18-94 (113)
119 cd02992 PDI_a_QSOX PDIa family 89.7 0.96 2.1E-05 38.6 6.1 39 249-287 21-61 (114)
120 cd02958 UAS UAS family; UAS is 89.2 0.68 1.5E-05 39.1 4.7 65 245-312 15-86 (114)
121 smart00454 SAM Sterile alpha m 89.0 0.22 4.7E-06 37.4 1.5 53 53-105 6-59 (68)
122 TIGR02196 GlrX_YruB Glutaredox 88.7 1.5 3.2E-05 32.7 5.9 31 251-288 2-32 (74)
123 cd02973 TRX_GRX_like Thioredox 88.5 1.4 3E-05 33.3 5.6 35 251-287 3-37 (67)
124 cd02960 AGR Anterior Gradient 88.3 0.54 1.2E-05 42.2 3.6 74 245-319 21-96 (130)
125 PF04592 SelP_N: Selenoprotein 88.1 0.87 1.9E-05 44.8 5.2 77 247-323 26-110 (238)
126 PF00255 GSHPx: Glutathione pe 87.5 2.3 4.9E-05 37.0 7.0 74 232-309 8-91 (108)
127 cd02965 HyaE HyaE family; HyaE 87.5 1.5 3.3E-05 38.3 5.9 33 245-277 26-59 (111)
128 PLN00410 U5 snRNP protein, DIM 87.4 0.99 2.2E-05 41.0 4.9 31 245-276 22-52 (142)
129 PF13778 DUF4174: Domain of un 87.3 5.6 0.00012 34.7 9.4 112 241-404 4-115 (118)
130 cd03026 AhpF_NTD_C TRX-GRX-lik 87.3 1.5 3.2E-05 36.3 5.5 44 246-291 11-54 (89)
131 smart00594 UAS UAS domain. 87.3 1.1 2.3E-05 38.8 4.9 67 244-313 24-97 (122)
132 PF00462 Glutaredoxin: Glutare 87.1 2.1 4.4E-05 32.0 5.7 33 251-290 1-33 (60)
133 PLN02309 5'-adenylylsulfate re 86.9 1.1 2.4E-05 47.9 5.7 44 246-289 364-407 (457)
134 TIGR00424 APS_reduc 5'-adenyly 86.5 1.4 3.1E-05 47.2 6.2 51 240-290 361-414 (463)
135 TIGR00365 monothiol glutaredox 86.1 0.81 1.8E-05 38.4 3.4 32 240-272 5-40 (97)
136 cd03028 GRX_PICOT_like Glutare 85.5 0.78 1.7E-05 37.7 2.9 32 241-273 2-37 (90)
137 PTZ00102 disulphide isomerase; 85.2 1.4 2.9E-05 45.9 5.2 71 245-315 373-444 (477)
138 cd02976 NrdH NrdH-redoxin (Nrd 85.0 3.1 6.7E-05 30.9 5.8 55 251-312 2-58 (73)
139 cd02957 Phd_like Phosducin (Ph 84.6 2.7 5.8E-05 35.5 5.9 41 248-290 25-65 (113)
140 TIGR02180 GRX_euk Glutaredoxin 84.5 2.7 5.8E-05 32.7 5.5 35 252-289 2-36 (84)
141 PRK10824 glutaredoxin-4; Provi 84.4 1 2.2E-05 39.5 3.3 32 240-272 8-43 (115)
142 PF05176 ATP-synt_10: ATP10 pr 84.1 9.1 0.0002 37.9 10.2 66 211-290 101-167 (252)
143 PHA02278 thioredoxin-like prot 84.0 3.3 7.2E-05 35.2 6.2 49 240-289 7-55 (103)
144 cd02982 PDI_b'_family Protein 83.9 2.3 4.9E-05 34.4 5.0 43 246-290 12-54 (103)
145 cd03027 GRX_DEP Glutaredoxin ( 83.8 3.5 7.7E-05 32.0 5.9 30 251-287 3-32 (73)
146 PRK00293 dipZ thiol:disulfide 83.7 2.4 5.2E-05 46.4 6.5 67 246-315 474-547 (571)
147 cd02986 DLP Dim1 family, Dim1- 83.2 3.1 6.8E-05 36.6 5.8 42 247-289 14-55 (114)
148 PF00837 T4_deiodinase: Iodoth 82.2 10 0.00022 37.5 9.5 68 199-287 72-141 (237)
149 PRK11200 grxA glutaredoxin 1; 81.8 4 8.7E-05 32.7 5.6 36 251-288 3-38 (85)
150 TIGR02187 GlrX_arch Glutaredox 81.5 4.2 9E-05 38.4 6.5 61 246-308 132-192 (215)
151 TIGR02187 GlrX_arch Glutaredox 80.5 3.6 7.8E-05 38.9 5.7 67 245-313 18-88 (215)
152 TIGR02194 GlrX_NrdH Glutaredox 78.4 6 0.00013 30.7 5.4 55 251-312 1-56 (72)
153 PRK01655 spxA transcriptional 78.3 2.9 6.3E-05 37.0 4.0 65 251-322 2-70 (131)
154 KOG1651 Glutathione peroxidase 78.1 9.2 0.0002 36.0 7.3 76 232-309 21-105 (171)
155 cd02954 DIM1 Dim1 family; Dim1 77.9 2.9 6.3E-05 36.7 3.8 74 247-321 14-87 (114)
156 PHA03050 glutaredoxin; Provisi 77.6 2.3 4.9E-05 36.6 3.0 30 241-272 7-36 (108)
157 cd03036 ArsC_like Arsenate Red 77.1 2.3 5E-05 36.4 3.0 67 251-322 1-69 (111)
158 TIGR02189 GlrX-like_plant Glut 76.4 2.3 5.1E-05 35.7 2.7 29 242-272 3-31 (99)
159 PF06110 DUF953: Eukaryotic pr 76.3 2.9 6.4E-05 37.0 3.5 43 246-289 19-67 (119)
160 cd03418 GRX_GRXb_1_3_like Glut 75.8 9.5 0.00021 29.2 5.9 21 251-271 2-22 (75)
161 cd02977 ArsC_family Arsenate R 75.7 3.6 7.8E-05 34.4 3.7 67 251-322 1-69 (105)
162 cd03023 DsbA_Com1_like DsbA fa 73.8 3.4 7.4E-05 35.3 3.2 28 246-273 4-31 (154)
163 cd02987 Phd_like_Phd Phosducin 73.6 8 0.00017 35.9 5.8 59 249-310 85-144 (175)
164 TIGR00412 redox_disulf_2 small 73.3 11 0.00024 29.9 5.8 38 251-292 3-40 (76)
165 TIGR02190 GlrX-dom Glutaredoxi 73.3 3.2 7E-05 33.0 2.7 30 251-287 10-39 (79)
166 TIGR02183 GRXA Glutaredoxin, G 72.9 3.4 7.4E-05 33.6 2.8 23 251-273 2-24 (86)
167 cd03419 GRX_GRXh_1_2_like Glut 72.9 3.3 7.2E-05 32.2 2.6 34 251-289 2-35 (82)
168 TIGR01617 arsC_related transcr 72.7 4.5 9.8E-05 34.7 3.7 65 251-322 1-69 (117)
169 cd03032 ArsC_Spx Arsenate Redu 72.7 5.2 0.00011 34.3 4.0 65 251-322 2-70 (115)
170 cd02066 GRX_family Glutaredoxi 72.6 12 0.00027 27.3 5.6 23 251-273 2-24 (72)
171 KOG4384 Uncharacterized SAM do 72.4 1.8 4E-05 44.8 1.3 84 5-98 217-300 (361)
172 PF13462 Thioredoxin_4: Thiore 72.0 7.2 0.00016 33.9 4.9 45 240-286 7-52 (162)
173 KOG1752 Glutaredoxin and relat 72.0 5.1 0.00011 34.7 3.8 39 240-287 7-45 (104)
174 TIGR02181 GRX_bact Glutaredoxi 71.0 9.8 0.00021 29.7 5.0 22 251-272 1-22 (79)
175 PRK12559 transcriptional regul 71.0 7 0.00015 34.7 4.6 65 251-322 2-70 (131)
176 cd03020 DsbA_DsbC_DsbG DsbA fa 70.0 7.4 0.00016 36.0 4.7 25 247-271 77-101 (197)
177 cd03029 GRX_hybridPRX5 Glutare 69.5 4.5 9.8E-05 31.2 2.7 21 251-271 3-23 (72)
178 PRK10638 glutaredoxin 3; Provi 68.6 4.8 0.0001 32.2 2.7 22 251-272 4-25 (83)
179 TIGR01130 ER_PDI_fam protein d 67.9 8.9 0.00019 39.2 5.2 66 246-313 363-430 (462)
180 PRK10329 glutaredoxin-like pro 67.5 19 0.00041 29.1 6.1 55 251-312 3-58 (81)
181 PTZ00062 glutaredoxin; Provisi 65.6 4.9 0.00011 38.6 2.6 33 240-273 106-142 (204)
182 COG0695 GrxC Glutaredoxin and 62.3 6.7 0.00015 31.8 2.5 22 251-272 3-24 (80)
183 TIGR02200 GlrX_actino Glutared 61.6 6.5 0.00014 29.9 2.2 20 252-271 3-22 (77)
184 PRK10877 protein disulfide iso 59.9 14 0.0003 35.8 4.6 37 246-286 106-142 (232)
185 cd02988 Phd_like_VIAF Phosduci 59.4 13 0.00029 35.0 4.3 38 248-288 104-141 (192)
186 PRK13344 spxA transcriptional 59.3 14 0.0003 32.9 4.2 65 251-322 2-70 (132)
187 cd03065 PDI_b_Calsequestrin_N 59.2 23 0.00049 31.1 5.4 67 244-310 24-95 (120)
188 PRK11657 dsbG disulfide isomer 53.3 22 0.00049 34.8 4.9 27 246-272 116-142 (251)
189 PRK06184 hypothetical protein; 53.2 1.4E+02 0.0029 31.7 11.1 93 234-400 401-494 (502)
190 PF07647 SAM_2: SAM domain (St 53.1 8.8 0.00019 29.2 1.6 44 6-49 9-52 (66)
191 PF14595 Thioredoxin_9: Thiore 52.5 20 0.00042 31.8 4.0 64 247-312 41-107 (129)
192 KOG0907 Thioredoxin [Posttrans 50.9 31 0.00066 29.7 4.8 42 247-290 21-62 (106)
193 cd03019 DsbA_DsbA DsbA family, 50.8 18 0.00039 32.0 3.5 31 246-276 14-44 (178)
194 cd03060 GST_N_Omega_like GST_N 48.5 34 0.00073 26.1 4.3 54 252-311 2-55 (71)
195 cd02972 DsbA_family DsbA famil 48.4 17 0.00036 28.0 2.6 34 251-285 1-34 (98)
196 cd03041 GST_N_2GST_N GST_N fam 47.3 39 0.00084 26.4 4.5 54 251-311 2-57 (77)
197 PTZ00062 glutaredoxin; Provisi 46.8 25 0.00054 33.8 4.0 48 240-289 9-57 (204)
198 PF13192 Thioredoxin_3: Thiore 46.2 12 0.00026 29.6 1.5 29 256-287 7-35 (76)
199 COG1651 DsbG Protein-disulfide 46.1 33 0.00071 32.5 4.7 40 232-273 71-110 (244)
200 PF05768 DUF836: Glutaredoxin- 45.6 81 0.0018 25.2 6.3 56 251-312 2-57 (81)
201 PHA02125 thioredoxin-like prot 45.5 46 0.001 26.0 4.7 21 251-271 2-22 (75)
202 PRK08132 FAD-dependent oxidore 44.4 2.4E+02 0.0052 30.3 11.4 104 234-400 441-544 (547)
203 cd00166 SAM Sterile alpha moti 43.8 13 0.00028 27.3 1.2 42 6-48 7-48 (63)
204 KOG3425 Uncharacterized conser 42.8 30 0.00066 31.2 3.6 31 257-288 43-73 (128)
205 cd03035 ArsC_Yffb Arsenate Red 42.4 19 0.0004 30.7 2.2 66 251-322 1-67 (105)
206 cd00570 GST_N_family Glutathio 41.3 34 0.00074 24.3 3.2 58 252-316 2-61 (71)
207 PF14968 CCDC84: Coiled coil p 39.6 7.9 0.00017 40.1 -0.6 19 253-271 55-73 (336)
208 cd03045 GST_N_Delta_Epsilon GS 39.6 29 0.00062 26.3 2.7 61 252-317 2-64 (74)
209 cd02979 PHOX_C FAD-dependent P 38.6 1.8E+02 0.0039 26.7 8.2 40 234-273 14-55 (167)
210 cd03051 GST_N_GTT2_like GST_N 37.7 68 0.0015 23.8 4.5 21 252-272 2-22 (74)
211 PRK08294 phenol 2-monooxygenas 35.1 2.2E+02 0.0047 31.7 9.5 40 234-273 479-520 (634)
212 cd03040 GST_N_mPGES2 GST_N fam 35.0 37 0.0008 26.1 2.6 23 251-273 2-24 (77)
213 PF00536 SAM_1: SAM domain (St 34.7 29 0.00063 26.2 2.0 43 5-48 7-49 (64)
214 KOG0910 Thioredoxin-like prote 34.3 90 0.002 29.0 5.4 69 245-315 60-128 (150)
215 PF03190 Thioredox_DsbH: Prote 33.6 35 0.00076 31.9 2.6 69 246-316 37-116 (163)
216 KOG0190 Protein disulfide isom 32.1 51 0.0011 36.0 3.9 75 239-313 34-111 (493)
217 COG5561 Predicted metal-bindin 31.4 46 0.001 28.6 2.8 30 257-287 5-34 (101)
218 PRK06183 mhpA 3-(3-hydroxyphen 31.2 4.1E+02 0.0089 28.5 10.6 105 235-401 427-532 (538)
219 PF10740 DUF2529: Protein of u 30.2 66 0.0014 30.5 3.9 55 250-312 85-145 (172)
220 PF11549 Sec31: Protein transp 29.7 19 0.00042 27.5 0.2 21 12-32 8-31 (51)
221 TIGR00993 3a0901s04IAP86 chlor 29.2 34 0.00073 39.0 2.1 26 26-53 406-431 (763)
222 cd03053 GST_N_Phi GST_N family 28.7 58 0.0012 24.8 2.8 23 250-272 1-23 (76)
223 cd03052 GST_N_GDAP1 GST_N fami 28.4 54 0.0012 25.6 2.6 61 251-316 1-63 (73)
224 PF07976 Phe_hydrox_dim: Pheno 28.0 1.3E+02 0.0028 27.7 5.4 90 234-323 46-166 (169)
225 cd03059 GST_N_SspA GST_N famil 27.7 1.6E+02 0.0035 22.0 5.1 22 252-273 2-23 (73)
226 cd03061 GST_N_CLIC GST_N famil 27.7 1E+02 0.0022 25.9 4.2 54 256-317 19-74 (91)
227 PF11948 DUF3465: Protein of u 27.2 68 0.0015 29.2 3.3 33 355-388 87-119 (131)
228 TIGR00995 3a0901s06TIC22 chlor 26.9 6.8E+02 0.015 25.4 12.0 132 232-407 89-221 (270)
229 cd03055 GST_N_Omega GST_N fami 26.7 1.1E+02 0.0023 24.7 4.1 56 250-311 18-73 (89)
230 PF06053 DUF929: Domain of unk 26.3 53 0.0012 32.7 2.7 40 240-279 51-90 (249)
231 TIGR03143 AhpF_homolog putativ 26.3 1E+02 0.0022 33.6 5.0 40 246-287 475-514 (555)
232 cd03056 GST_N_4 GST_N family, 25.6 70 0.0015 23.8 2.7 59 252-315 2-62 (73)
233 TIGR00014 arsC arsenate reduct 25.4 66 0.0014 27.6 2.8 64 251-322 1-70 (114)
234 PRK10026 arsenate reductase; P 23.9 1.2E+02 0.0026 27.6 4.3 68 250-322 3-72 (141)
235 COG4974 XerD Site-specific rec 23.6 48 0.001 33.9 1.8 94 15-115 81-191 (300)
236 PRK11869 2-oxoacid ferredoxin 23.4 61 0.0013 32.7 2.5 35 253-287 5-41 (280)
237 TIGR00075 hypD hydrogenase exp 23.0 68 0.0015 33.8 2.8 163 240-409 52-247 (369)
238 PF04134 DUF393: Protein of un 22.8 59 0.0013 27.1 2.0 29 255-286 3-31 (114)
239 KOG1170 Diacylglycerol kinase 22.8 31 0.00067 39.8 0.3 81 54-139 1001-1081(1099)
240 TIGR03759 conj_TIGR03759 integ 22.8 1.8E+02 0.004 28.2 5.5 55 244-304 106-161 (200)
241 cd03034 ArsC_ArsC Arsenate Red 22.5 96 0.0021 26.5 3.2 65 251-322 1-69 (112)
242 PF01323 DSBA: DSBA-like thior 21.9 86 0.0019 28.0 3.0 37 251-287 2-38 (193)
243 PHA01812 hypothetical protein 21.8 24 0.00053 30.2 -0.6 28 87-114 30-59 (122)
244 PRK15062 hydrogenase isoenzyme 21.3 77 0.0017 33.4 2.8 163 240-409 46-241 (364)
245 PF13417 GST_N_3: Glutathione 21.3 2E+02 0.0043 22.1 4.6 55 254-314 2-56 (75)
246 cd03058 GST_N_Tau GST_N family 20.6 1.9E+02 0.0041 21.9 4.3 61 252-317 2-62 (74)
No 1
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1.6e-29 Score=233.82 Aligned_cols=160 Identities=34% Similarity=0.672 Sum_probs=147.1
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeec
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYD 310 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsD 310 (416)
+..|+.|++++||+++++||+|+|||+|..||+++++|.++++-++++|+.||+|+|++..+ +.+|+. .+|..+||.|
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~-~~~f~~q~~f~gevylD 114 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQ-FEDFWDQTYFSGEVYLD 114 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceee-cchhhcccCcceeEEEc
Confidence 55799999999999999999999999999999999999999999999999999999976664 778885 7899999999
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCH
Q 014901 311 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPL 390 (416)
Q Consensus 311 p~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~ 390 (416)
|++.+|+.+++++. .++++ .+.++.+.+||++.|+.+|++||++++||+++|.+|+ .|.|.|++++++||+++
T Consensus 115 ~~~~~Y~~le~k~~-----~~g~l-~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~-~il~~h~dk~~gD~~~i 187 (197)
T KOG4498|consen 115 PHRGFYKPLEFKRA-----EMGFL-RPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGK-KILFIHVDKETGDHVPI 187 (197)
T ss_pred Cccceechhhhhcc-----ccccc-ccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCC-eEEEEEecCCCCCCcCH
Confidence 99999999999742 24554 4889999999999999999999999999999999997 89999999999999999
Q ss_pred HHHHHHHHh
Q 014901 391 AEVIEICTQ 399 (416)
Q Consensus 391 ~eVLaAlk~ 399 (416)
++||++++.
T Consensus 188 ~~Vl~v~~~ 196 (197)
T KOG4498|consen 188 DSVLQVVGK 196 (197)
T ss_pred HHHHHHhhc
Confidence 999999874
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7e-24 Score=192.96 Aligned_cols=151 Identities=20% Similarity=0.169 Sum_probs=128.3
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
.+.+|++||.|.|++. +|+.|+|+++ +.++|||+||+..++|.|..|++++++.+++|++
T Consensus 3 ~l~~G~~aPdF~Lp~~-------------------~g~~v~Lsd~-~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~ 62 (157)
T COG1225 3 MLKVGDKAPDFELPDQ-------------------DGETVSLSDL-RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK 62 (157)
T ss_pred cCCCCCcCCCeEeecC-------------------CCCEEehHHh-cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh
Confidence 4678999998888887 5889999997 4559999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 014901 279 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 357 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~G 357 (416)
+|+.+|+||++++.+ ++.|.+ ++++|++|||++.+++++||+...... .|
T Consensus 63 ~~a~V~GIS~Ds~~~-~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~----------------------------~g 113 (157)
T COG1225 63 LGAVVLGISPDSPKS-HKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKM----------------------------YG 113 (157)
T ss_pred CCCEEEEEeCCCHHH-HHHHHHHhCCCceeeECCcHHHHHHhCccccccc----------------------------Cc
Confidence 999999999999986 899996 899999999999999999998531000 01
Q ss_pred C--CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 014901 358 E--GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ 401 (416)
Q Consensus 358 D--~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~ 401 (416)
. ....++|||||++| +|+|+|++....+|+ ++||++|+++.
T Consensus 114 k~~~~~~R~TfvId~dG-~I~~~~~~v~~~~h~--~~vl~~l~~l~ 156 (157)
T COG1225 114 KEYMGIERSTFVIDPDG-KIRYVWRKVKVKGHA--DEVLAALKKLA 156 (157)
T ss_pred cccccccceEEEECCCC-eEEEEecCCCCcccH--HHHHHHHHHhc
Confidence 1 23457999999997 999999666655555 99999998874
No 3
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.91 E-value=6.2e-24 Score=183.94 Aligned_cols=138 Identities=28% Similarity=0.410 Sum_probs=111.6
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccc
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 312 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~ 312 (416)
+|+++++++++.++++||+|||+.|||+|+.++..|+++.+++.+.|+++|+|+.+..+. ...|.+ ..++|++++|++
T Consensus 11 ~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~-~~~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 11 GGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK-LEAFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH-HHHHHHhcCCCCeEEECCc
Confidence 499999999988899999999999999999999999999999999999999999988765 556665 789999999999
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 014901 313 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 382 (416)
Q Consensus 313 r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~ 382 (416)
+.+|++||+... .... .. +..+. ..+..+..++..|+++++||+||||++| +|+|.|+++
T Consensus 90 ~~~~~~~g~~~~---~~~~--~~-~~~~~---~~~~~~~~~~~~~~~~~~p~~fvid~~g-~i~~~~~~~ 149 (149)
T cd02970 90 RKLYRALGLVRS---LPWS--NT-PRALW---KNAAIGFRGNDEGDGLQLPGVFVIGPDG-TILFAHVDR 149 (149)
T ss_pred hhHHHHcCceec---CcHH--HH-HHHHh---hCcccccccCCCCcccccceEEEECCCC-eEEEEecCC
Confidence 999999999631 1111 11 22211 1222334456678889999999999996 999999874
No 4
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.82 E-value=2.5e-19 Score=175.14 Aligned_cols=153 Identities=13% Similarity=0.085 Sum_probs=125.0
Q ss_pred CCCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 014901 198 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD 277 (416)
Q Consensus 198 ~a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~ 277 (416)
+.+.+|+.+|.|.+++.. +.+++.++++++++++++||+||++.|||.|..|+.+|++.+++|+
T Consensus 66 ~~~~vGd~aPdF~l~~~~----------------~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~ 129 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALL----------------NDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFE 129 (261)
T ss_pred ccccCCCCCCCCEeeccc----------------CCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 456899999977765531 2235679999987888999999999999999999999999999999
Q ss_pred hcCCeEEEEecCChhhHHhhhcC--------CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 014901 278 ALGIQLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL 349 (416)
Q Consensus 278 alGV~LVaIspEs~~~~ik~F~~--------~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~ 349 (416)
+.|+++|+||.+++.. .+.|.+ ..++||+++|++.++.++||+.. +
T Consensus 130 ~~gv~VigIS~Ds~~~-h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~-------------~------------ 183 (261)
T PTZ00137 130 ERGVKVLGVSVDSPFS-HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLR-------------D------------ 183 (261)
T ss_pred HCCCEEEEEECCCHHH-HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCC-------------c------------
Confidence 9999999999988753 455542 46899999999999999999831 0
Q ss_pred CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 350 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 350 G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
.++.+|++||||++| +|+|.++......+ +++++|+++++++-
T Consensus 184 --------~g~a~R~tFIID~dG-~I~~~~~~~~~~gr-~v~eiLr~l~alq~ 226 (261)
T PTZ00137 184 --------EGFSHRASVLVDKAG-VVKHVAVYDLGLGR-SVDETLRLFDAVQF 226 (261)
T ss_pred --------CCceecEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhch
Confidence 123578999999996 99999976554444 89999999999874
No 5
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.81 E-value=3.5e-19 Score=164.65 Aligned_cols=148 Identities=13% Similarity=0.057 Sum_probs=120.3
Q ss_pred CCCCCCCccccccccccccchhhhccccccccCCCC--ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 201 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTP--PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 201 ~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~--~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
..|+.+|.|.+++. + +|+ .++++++ +++++||+|||+.|||.|+.++.+|++..++|++
T Consensus 3 ~~G~~aP~f~l~~~-----~-------------~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~ 63 (187)
T TIGR03137 3 LINTEIKPFKATAY-----H-------------NGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKK 63 (187)
T ss_pred ccCCcCCCcEeeec-----c-------------CCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh
Confidence 56788997766653 1 254 6788886 6779999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-----CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 014901 279 LGIQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 353 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~~-----~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~g 353 (416)
.|+++|+|+.+.... .+.|.+ ..++|++++|++.+++++||+.. +.
T Consensus 64 ~gv~vi~VS~D~~~~-~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~-------------~~--------------- 114 (187)
T TIGR03137 64 LGVEVYSVSTDTHFV-HKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLI-------------EE--------------- 114 (187)
T ss_pred cCCcEEEEeCCCHHH-HHHHHhhhhhccCcceeEEECCccHHHHHhCCcc-------------cC---------------
Confidence 999999999888753 566653 25899999999999999999841 00
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 354 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 354 n~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
.+...|++||||++| +|+|.|+......+ +.++||++++.++-
T Consensus 115 ----~g~~~p~tfiID~~G-~I~~~~~~~~~~~~-~~~~ll~~l~~~~~ 157 (187)
T TIGR03137 115 ----AGLADRGTFVIDPEG-VIQAVEITDNGIGR-DASELLRKIKAAQY 157 (187)
T ss_pred ----CCceeeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence 022368999999996 99999998877776 89999999877653
No 6
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.80 E-value=6.4e-19 Score=164.22 Aligned_cols=150 Identities=9% Similarity=0.027 Sum_probs=122.1
Q ss_pred CCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 014901 201 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 280 (416)
Q Consensus 201 ~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG 280 (416)
..|.++|.|.++.. .+.+...++|+++ +++++||+||+..|||.|..|+.+|++..++|++.|
T Consensus 3 ~~~~~~p~f~~~~~----------------~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g 65 (187)
T PRK10382 3 LINTKIKPFKNQAF----------------KNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG 65 (187)
T ss_pred ccCCcCCCcEEEEE----------------eCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 45777886655443 1224568888885 667999999999999999999999999999999999
Q ss_pred CeEEEEecCChhhHHhhhcC-----CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 014901 281 IQLFAVLHEYIESEVKDFWP-----RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF 355 (416)
Q Consensus 281 V~LVaIspEs~~~~ik~F~~-----~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~ 355 (416)
+++|+||.+++.. .+.|.+ ..++|++++|++..+.++||+.. +.
T Consensus 66 ~~vigIS~D~~~~-~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~-------------~~----------------- 114 (187)
T PRK10382 66 VDVYSVSTDTHFT-HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMR-------------ED----------------- 114 (187)
T ss_pred CEEEEEeCCCHHH-HHHHHHhhccccCCceeEEEcCchHHHHHcCCCc-------------cc-----------------
Confidence 9999999999875 677763 36899999999999999999831 10
Q ss_pred CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 356 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 356 ~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
.++..|++||||++| +|+|.|+......+ +++++|++|+.++-
T Consensus 115 --~g~~~r~tfIID~~G-~I~~~~~~~~~~~~-~~~eil~~l~alq~ 157 (187)
T PRK10382 115 --EGLADRATFVVDPQG-IIQAIEVTAEGIGR-DASDLLRKIKAAQY 157 (187)
T ss_pred --CCceeeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHhhhh
Confidence 122358999999996 99999998755555 89999999999875
No 7
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.80 E-value=7.7e-19 Score=166.74 Aligned_cols=150 Identities=15% Similarity=0.042 Sum_probs=122.5
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
.+..|+.+|.|.+++. .|+ +.+.+.++++++||+||++.|||.|..|+.+|++.+++|++
T Consensus 6 ~~~iG~~aPdF~l~~~-------------------~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~ 65 (215)
T PRK13191 6 IPLIGEKFPEMEVITT-------------------HGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK 65 (215)
T ss_pred cccCCCcCCCCEeecC-------------------CCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 5578899997766554 365 66766567788999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-------CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCC
Q 014901 279 LGIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGV 351 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~~-------~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~ 351 (416)
+|++||+||.++... .+.|.. ..++|++++|+++++.++||+.. +.
T Consensus 66 ~g~~VigvS~Ds~~~-h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~-------------~~------------- 118 (215)
T PRK13191 66 LNTELIGLSVDSNIS-HIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIH-------------AE------------- 118 (215)
T ss_pred CCCEEEEEECCCHHH-HHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcc-------------cc-------------
Confidence 999999999998864 444431 36899999999999999999831 10
Q ss_pred ccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 352 EQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 352 ~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
+.+..+|++||||++| +|++.++......| +++|+|++|++++-
T Consensus 119 -----~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr-~~~eilr~l~alq~ 162 (215)
T PRK13191 119 -----SSTATVRAVFIVDDKG-TVRLILYYPMEIGR-NIDEILRAIRALQL 162 (215)
T ss_pred -----cCCceeEEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHhhh
Confidence 0123578999999997 99999988866666 99999999998864
No 8
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.80 E-value=2.7e-19 Score=152.23 Aligned_cols=109 Identities=28% Similarity=0.421 Sum_probs=88.7
Q ss_pred HHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHH---HHHH-
Q 014901 268 QLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPR---AIAN- 342 (416)
Q Consensus 268 ~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~---v~~~- 342 (416)
+|++..|+|+++||+||+|++++++. ++.|++ .+|||+||+||++++|++||+.+.....+ ..+. .+..
T Consensus 1 ~L~~~~~~l~~~gv~lv~I~~g~~~~-~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~-----~~~~~~~~~~~~ 74 (115)
T PF13911_consen 1 QLSRRKPELEAAGVKLVVIGCGSPEG-IEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSL-----LPPALWSGLSNI 74 (115)
T ss_pred ChhHhHHHHHHcCCeEEEEEcCCHHH-HHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCC-----CchHHHHHHHHH
Confidence 47788999999999999999999975 899995 89999999999999999999986333321 2232 2232
Q ss_pred HHHHHhcCCcccc-CCCCcccceEEEEecCCCcEEEEEecCC
Q 014901 343 YKRARTLGVEQNF-KGEGEIKGGLFIVGRGRSGIAYQFIERN 383 (416)
Q Consensus 343 ~~rA~~~G~~gn~-~GD~lqlGGtFVId~gG~~I~yah~d~d 383 (416)
+.+++..++.++. .|+.+|+||+||||++| +|+|+|++++
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g-~v~~~hr~~~ 115 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGG-KVLYEHRDRH 115 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCC-eEEEEEecCC
Confidence 3444555788888 99999999999999996 8999999975
No 9
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.79 E-value=1.1e-18 Score=163.43 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=110.9
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhc-------CCCCCcee
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFW-------PRYWGGVV 307 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~-------~~~l~f~V 307 (416)
| .+++.++..++++||+||+..|||.|+.++.+|++++++|++.|+++|+|+.++... .++|. +..++|++
T Consensus 15 g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~-~~~~~~~i~~~~~~~~~fpi 92 (203)
T cd03016 15 G-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVES-HIKWIEDIEEYTGVEIPFPI 92 (203)
T ss_pred C-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH-HHHHHhhHHHhcCCCCceeE
Confidence 5 589999755478899999999999999999999999999999999999999988754 33333 25789999
Q ss_pred eeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCC
Q 014901 308 VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDW 387 (416)
Q Consensus 308 LsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDr 387 (416)
++|+++.++++||+.. +. .|.+...+++||||++| +|++.++.+....+
T Consensus 93 l~D~~~~ia~~yg~~~-------------~~-----------------~~~~~~~r~~fiID~~G-~I~~~~~~~~~~gr 141 (203)
T cd03016 93 IADPDREVAKLLGMID-------------PD-----------------AGSTLTVRAVFIIDPDK-KIRLILYYPATTGR 141 (203)
T ss_pred EECchHHHHHHcCCcc-------------cc-----------------CCCCceeeEEEEECCCC-eEEEEEecCCCCCC
Confidence 9999999999999841 11 02233568999999996 99999987755544
Q ss_pred CCHHHHHHHHHhhhhhh
Q 014901 388 APLAEVIEICTQLQDQQ 404 (416)
Q Consensus 388 ad~~eVLaAlk~l~~~~ 404 (416)
+.+++|++++.++...
T Consensus 142 -~~~ell~~l~~lq~~~ 157 (203)
T cd03016 142 -NFDEILRVVDALQLTD 157 (203)
T ss_pred -CHHHHHHHHHHHhhHh
Confidence 7899999999987543
No 10
>PRK15000 peroxidase; Provisional
Probab=99.79 E-value=1.4e-18 Score=163.00 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=125.9
Q ss_pred CCCCCCCccccccccccccchhhhccccccccCCCCc---eechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 014901 201 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP---MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD 277 (416)
Q Consensus 201 ~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~---VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~ 277 (416)
..|+++|.|.+++. . .+|+. +++.+.++++++||+||++.|||.|+.|+.+|++.+.+|+
T Consensus 3 ~vg~~aPdF~~~~~-----~------------~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~ 65 (200)
T PRK15000 3 LVTRQAPDFTAAAV-----L------------GSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQ 65 (200)
T ss_pred cCCCcCCCCEeecc-----c------------CCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 46788896666554 1 13554 4555555788999999999999999999999999999999
Q ss_pred hcCCeEEEEecCChhhHHhhhcC-----C---CCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhc
Q 014901 278 ALGIQLFAVLHEYIESEVKDFWP-----R---YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTL 349 (416)
Q Consensus 278 alGV~LVaIspEs~~~~ik~F~~-----~---~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~ 349 (416)
+.|++||+||.++... .+.|.+ . .++|++++|+++++.++||+.. +.
T Consensus 66 ~~g~~vigvS~D~~~~-~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~-------------~~----------- 120 (200)
T PRK15000 66 KRGVEVVGVSFDSEFV-HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEH-------------PD----------- 120 (200)
T ss_pred HCCCEEEEEECCCHHH-HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCcc-------------CC-----------
Confidence 9999999999998753 444432 2 3699999999999999999841 10
Q ss_pred CCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 014901 350 GVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS 414 (416)
Q Consensus 350 G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~~~----------~~~~~~~~~~ 414 (416)
.++.+|++||||++| +|++.+.+...-.| ++++||+++++++-.. ++|.++|+.+
T Consensus 121 --------~g~~~r~tfiID~~G-~I~~~~~~~~~~gr-~~~eilr~l~al~~~~~~~~~~p~~w~~g~~~~~~~ 185 (200)
T PRK15000 121 --------EGVALRGSFLIDANG-IVRHQVVNDLPLGR-NIDEMLRMVDALQFHEEHGDVCPAQWEKGKEGMNAS 185 (200)
T ss_pred --------CCcEEeEEEEECCCC-EEEEEEecCCCCCC-CHHHHHHHHHHhhhHHhcCCCcCCCCCCCCceeccC
Confidence 123479999999996 99999998766666 8999999999887422 5666776654
No 11
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.79 E-value=9.7e-19 Score=157.57 Aligned_cols=139 Identities=19% Similarity=0.152 Sum_probs=112.4
Q ss_pred CCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHH-HHHHHhccchhhhcC
Q 014901 202 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAE-AHQLYAKKPIFDALG 280 (416)
Q Consensus 202 ~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~e-l~~Ls~~~peL~alG 280 (416)
+|+++|.|.|++.. +.+|+.|+|+++++++++||+||++.|||.|+.| +.+|++.+++|+++|
T Consensus 1 vG~~aPdF~l~~~~----------------~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g 64 (155)
T cd03013 1 VGDKLPNVTLFEYV----------------PGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG 64 (155)
T ss_pred CCCcCCCeEeeeec----------------cCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC
Confidence 47889977776651 1148899999987888999999999999999999 999999999999999
Q ss_pred C-eEEEEecCChhhHHhhhcC-CCC--CceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 014901 281 I-QLFAVLHEYIESEVKDFWP-RYW--GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK 356 (416)
Q Consensus 281 V-~LVaIspEs~~~~ik~F~~-~~l--~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~ 356 (416)
+ .+++||.+++.. .+.|.. ..+ +|++++|+++++.++||+.. +... .|.
T Consensus 65 ~~~V~~iS~D~~~~-~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~-------------~~~~--------~~~----- 117 (155)
T cd03013 65 VDEVICVSVNDPFV-MKAWGKALGAKDKIRFLADGNGEFTKALGLTL-------------DLSA--------AGG----- 117 (155)
T ss_pred CCEEEEEECCCHHH-HHHHHHhhCCCCcEEEEECCCHHHHHHcCCCc-------------cccc--------cCC-----
Confidence 9 599999999885 788885 555 89999999999999999941 0000 010
Q ss_pred CCCcccceEEEEecCCCcEEEEEecCCCCC
Q 014901 357 GEGEIKGGLFIVGRGRSGIAYQFIERNFGD 386 (416)
Q Consensus 357 GD~lqlGGtFVId~gG~~I~yah~d~d~gD 386 (416)
..+...++|||| +| +|+|.|++.+..+
T Consensus 118 -~~~~~R~~fiId-~g-~I~~~~~~~~~~~ 144 (155)
T cd03013 118 -GIRSKRYALIVD-DG-KVKYLFVEEDPGD 144 (155)
T ss_pred -cceeeeEEEEEC-CC-EEEEEEEecCCCC
Confidence 123467999999 55 9999999998744
No 12
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.79 E-value=1.9e-18 Score=156.94 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=123.9
Q ss_pred CCCCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 197 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 197 ~~a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
..++.+|+.+|.|.+++. +|+.++++++ +++++||.||+..|||.|+.++.+|++.++++
T Consensus 15 ~~~~~~G~~~P~f~l~~~-------------------~g~~v~l~~~-~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 15 GSLPQVGDKAPDFTLVAN-------------------DLSDVSLADF-AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred CCCCCCCCCCCCeEEEcC-------------------CCcEEehHHh-CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc
Confidence 456778999997777654 4899999996 67799999999999999999999999999888
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-CCCC-ceeeec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 014901 277 DALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 353 (416)
Q Consensus 277 ~alGV~LVaIspEs~~~~ik~F~~-~~l~-f~VLsD-p~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~g 353 (416)
+ |+++|+|+.+++.. +++|.+ .+++ +++++| +++.+.++||+.. .|.
T Consensus 75 ~--~~~vv~vs~D~~~~-~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~------------~~~--------------- 124 (167)
T PRK00522 75 D--NTVVLCISADLPFA-QKRFCGAEGLENVITLSDFRDHSFGKAYGVAI------------AEG--------------- 124 (167)
T ss_pred C--CcEEEEEeCCCHHH-HHHHHHhCCCCCceEeecCCccHHHHHhCCee------------ccc---------------
Confidence 3 99999999998764 678885 5666 789999 5679999999841 010
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHh
Q 014901 354 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQ 399 (416)
Q Consensus 354 n~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~ 399 (416)
...++..+++||||++| +|+|.|+..+..+.++++++|+++++
T Consensus 125 --~~~g~~~r~tfvId~~G-~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 125 --PLKGLLARAVFVLDENN-KVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred --ccCCceeeEEEEECCCC-eEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 01234568999999996 99999999999999999999999863
No 13
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.79 E-value=1.9e-18 Score=162.06 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=118.6
Q ss_pred CCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 014901 200 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 279 (416)
Q Consensus 200 ~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al 279 (416)
+..|+.+|.|.+++. .| .++++++ +++++||+||++.|||+|+.++.+|++.+++|++.
T Consensus 2 ~~vG~~aP~F~~~~~-------------------~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~ 60 (202)
T PRK13190 2 VKLGQKAPDFTVNTT-------------------KG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL 60 (202)
T ss_pred CCCCCCCCCcEEecC-------------------CC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC
Confidence 457888997766543 25 6899995 66778888999999999999999999999999999
Q ss_pred CCeEEEEecCChhhHHhhhc----C-C--CCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 014901 280 GIQLFAVLHEYIESEVKDFW----P-R--YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE 352 (416)
Q Consensus 280 GV~LVaIspEs~~~~ik~F~----~-~--~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~ 352 (416)
|+++|+||.++... .++|. + . .++|++++|++++++++||+.. +.
T Consensus 61 ~~~vi~vS~D~~~~-~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~-------------~~-------------- 112 (202)
T PRK13190 61 GVELVGLSVDSIYS-HIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID-------------EN-------------- 112 (202)
T ss_pred CCEEEEEeCCCHHH-HHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc-------------cc--------------
Confidence 99999999988754 33332 2 2 3689999999999999999841 10
Q ss_pred cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 353 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 353 gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
++..+|++||||++| +|+|.+.......| +++++|++++.++.
T Consensus 113 -----~g~~~p~~fiId~~G-~I~~~~~~~~~~gr-~~~ellr~l~~l~~ 155 (202)
T PRK13190 113 -----SGATVRGVFIIDPNQ-IVRWMIYYPAETGR-NIDEIIRITKALQV 155 (202)
T ss_pred -----CCcEEeEEEEECCCC-EEEEEEEeCCCCCC-CHHHHHHHHHHhhh
Confidence 122479999999996 99999987766655 89999999998865
No 14
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.79 E-value=1.5e-18 Score=151.52 Aligned_cols=129 Identities=18% Similarity=0.199 Sum_probs=109.9
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccc
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 312 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~ 312 (416)
+|+.++++++..++++||+|+|..|||.|..++.+|+++.+++.+.|+++|+|+.++++. ++.|.+ ..++|++++|++
T Consensus 16 ~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~-~~~~~~~~~~~~~~~~D~~ 94 (149)
T cd03018 16 NGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFS-LRAWAEENGLTFPLLSDFW 94 (149)
T ss_pred CCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHH-HHHHHHhcCCCceEecCCC
Confidence 489999999755589999999999999999999999999999999999999999988775 778875 678999999988
Q ss_pred --hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCC--CCCCC
Q 014901 313 --MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERN--FGDWA 388 (416)
Q Consensus 313 --r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d--~gDra 388 (416)
+++++.||+.. . +. +...|.+||||++| +|+|.|...+ ..+.+
T Consensus 95 ~~~~~~~~~g~~~-----------~-~~--------------------~~~~~~~~lid~~G-~v~~~~~~~~~~~~~~~ 141 (149)
T cd03018 95 PHGEVAKAYGVFD-----------E-DL--------------------GVAERAVFVIDRDG-IIRYAWVSDDGEPRDLP 141 (149)
T ss_pred chhHHHHHhCCcc-----------c-cC--------------------CCccceEEEECCCC-EEEEEEecCCcccccch
Confidence 99999998841 0 10 12356899999996 9999999999 78888
Q ss_pred CHHHHHHH
Q 014901 389 PLAEVIEI 396 (416)
Q Consensus 389 d~~eVLaA 396 (416)
++.++|+|
T Consensus 142 ~~~~~~~~ 149 (149)
T cd03018 142 DYDEALDA 149 (149)
T ss_pred hHHHHhhC
Confidence 88887764
No 15
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.79 E-value=7.3e-19 Score=148.08 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=106.6
Q ss_pred CCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 014901 202 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI 281 (416)
Q Consensus 202 ~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV 281 (416)
+|+++|.+.+.+. +|+.+++++| +++|+||.||+..|||.|..++.+|+++..++++.|+
T Consensus 1 vG~~~P~f~l~~~-------------------~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~ 60 (124)
T PF00578_consen 1 VGDKAPDFTLTDS-------------------DGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGV 60 (124)
T ss_dssp TTSBGGCEEEETT-------------------TSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTE
T ss_pred CcCCCCCcEeECC-------------------CCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceE
Confidence 4788886666655 4899999998 8889999999999999999999999999999999999
Q ss_pred eEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCc
Q 014901 282 QLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGE 360 (416)
Q Consensus 282 ~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~l 360 (416)
++|+|+.+..+. ++.|.+ ..++|++++|++..++++||+.. . . ...
T Consensus 61 ~vi~is~d~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----------~-~--------------------~~~ 107 (124)
T PF00578_consen 61 QVIGISTDDPEE-IKQFLEEYGLPFPVLSDPDGELAKAFGIED-----------E-K--------------------DTL 107 (124)
T ss_dssp EEEEEESSSHHH-HHHHHHHHTCSSEEEEETTSHHHHHTTCEE-----------T-T--------------------TSE
T ss_pred Eeeecccccccc-hhhhhhhhccccccccCcchHHHHHcCCcc-----------c-c--------------------CCc
Confidence 999999998874 788775 67999999999999999999852 0 0 244
Q ss_pred ccceEEEEecCCCcEEEE
Q 014901 361 IKGGLFIVGRGRSGIAYQ 378 (416)
Q Consensus 361 qlGGtFVId~gG~~I~ya 378 (416)
..|++||||++| +|+|.
T Consensus 108 ~~p~~~lid~~g-~I~~~ 124 (124)
T PF00578_consen 108 ALPAVFLIDPDG-KIRYA 124 (124)
T ss_dssp ESEEEEEEETTS-BEEEE
T ss_pred eEeEEEEECCCC-EEEeC
Confidence 679999999996 89985
No 16
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.78 E-value=3.1e-18 Score=155.42 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=119.6
Q ss_pred CCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 014901 202 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI 281 (416)
Q Consensus 202 ~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV 281 (416)
+|+.+|.|.++++ .+ +.+|+.++|+++ +++++||.|+|+.|||.|..++..|++++++|.+.|+
T Consensus 1 vG~~aP~f~~~~~-----~g----------~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v 64 (173)
T cd03015 1 VGKKAPDFKATAV-----VP----------NGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNA 64 (173)
T ss_pred CCCcCCCCEeecc-----cC----------CCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCC
Confidence 4678887766655 10 013479999997 6689999999999999999999999999999999999
Q ss_pred eEEEEecCChhhHHhhhcC--------CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 014901 282 QLFAVLHEYIESEVKDFWP--------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 353 (416)
Q Consensus 282 ~LVaIspEs~~~~ik~F~~--------~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~g 353 (416)
++|+|+.+.... .+.|.+ +.++|++++|++..++++||+.. .+
T Consensus 65 ~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~------------~~---------------- 115 (173)
T cd03015 65 EVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLD------------EE---------------- 115 (173)
T ss_pred EEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCcc------------cc----------------
Confidence 999999877543 344543 35899999999999999999841 01
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 014901 354 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 403 (416)
Q Consensus 354 n~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~~ 403 (416)
.++.+|.+||||++| +|+|.|+......+ +.++||+.++.++..
T Consensus 116 ----~~~~~p~~~lID~~G-~I~~~~~~~~~~~~-~~~~il~~l~~~~~~ 159 (173)
T cd03015 116 ----EGVALRGTFIIDPEG-IIRHITVNDLPVGR-SVDETLRVLDALQFV 159 (173)
T ss_pred ----CCceeeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHhhhh
Confidence 023458999999997 99999998766554 789999999887533
No 17
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.78 E-value=2.8e-18 Score=163.00 Aligned_cols=150 Identities=15% Similarity=0.062 Sum_probs=119.8
Q ss_pred CCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 014901 201 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 280 (416)
Q Consensus 201 ~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG 280 (416)
..|+.+|.|.+++. .|+.+.++++ +++++||+||++.|||.|+.|+.+|++++++|++.|
T Consensus 3 ~~Gd~aPdF~l~t~-------------------~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g 62 (215)
T PRK13599 3 LLGEKFPSMEVVTT-------------------QGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN 62 (215)
T ss_pred CCCCCCCCCEeECC-------------------CCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC
Confidence 57888996666543 3777666664 677889999999999999999999999999999999
Q ss_pred CeEEEEecCChhhHHhhhc-------CCCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 014901 281 IQLFAVLHEYIESEVKDFW-------PRYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 353 (416)
Q Consensus 281 V~LVaIspEs~~~~ik~F~-------~~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~g 353 (416)
++||+||.++... .+.|. ...++|+|++|+++++.++||+.. |. .
T Consensus 63 v~vigIS~D~~~~-~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~-------------~~------------~-- 114 (215)
T PRK13599 63 TELIGLSVDQVFS-HIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIH-------------PG------------K-- 114 (215)
T ss_pred CEEEEEeCCCHHH-HHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCc-------------cC------------C--
Confidence 9999999998764 44443 236899999999999999999841 11 0
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 014901 354 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 404 (416)
Q Consensus 354 n~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~~~ 404 (416)
| ....|++||||++| +|++.++.+....+ ++++||+++++++..-
T Consensus 115 ---~-~~~~R~tfIID~dG-~Ir~~~~~p~~~gr-~~~eilr~l~~lq~~~ 159 (215)
T PRK13599 115 ---G-TNTVRAVFIVDDKG-TIRLIMYYPQEVGR-NVDEILRALKALQTAD 159 (215)
T ss_pred ---C-CceeeEEEEECCCC-EEEEEEEcCCCCCC-CHHHHHHHHHHhhhhh
Confidence 1 12478999999996 99999986655554 8999999999886533
No 18
>PRK13189 peroxiredoxin; Provisional
Probab=99.78 E-value=4.4e-18 Score=162.17 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=121.3
Q ss_pred CCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 014901 200 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 279 (416)
Q Consensus 200 ~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al 279 (416)
+.+|+.+|.|.+++. .| .+++.+.++++++||+||+..|||.|..++.+|++.+++|++.
T Consensus 9 ~~vG~~aPdF~~~~~-------------------~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~ 68 (222)
T PRK13189 9 PLIGDKFPEFEVKTT-------------------HG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL 68 (222)
T ss_pred ccCCCcCCCcEeEcC-------------------CC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc
Confidence 467888997776654 25 4778887777789999999999999999999999999999999
Q ss_pred CCeEEEEecCChhhHHhhhcC-------CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCc
Q 014901 280 GIQLFAVLHEYIESEVKDFWP-------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVE 352 (416)
Q Consensus 280 GV~LVaIspEs~~~~ik~F~~-------~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~ 352 (416)
|++||+||.++... ..+|.+ ..++|+|++|+++.++++||+.. +.
T Consensus 69 ~v~VigvS~D~~~~-h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~-------------~~-------------- 120 (222)
T PRK13189 69 NTELIGLSIDQVFS-HIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMIS-------------PG-------------- 120 (222)
T ss_pred CCEEEEEECCCHHH-HHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCc-------------cc--------------
Confidence 99999999988764 444432 25799999999999999999841 10
Q ss_pred cccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh
Q 014901 353 QNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ 404 (416)
Q Consensus 353 gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~~~ 404 (416)
+.+..+|++||||++| +|++.++......+ +.+++|++++.++...
T Consensus 121 ----~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr-~~~eilr~l~alq~~~ 166 (222)
T PRK13189 121 ----KGTNTVRAVFIIDPKG-IIRAILYYPQEVGR-NMDEILRLVKALQTSD 166 (222)
T ss_pred ----cCCCceeEEEEECCCC-eEEEEEecCCCCCC-CHHHHHHHHHHhhhHh
Confidence 0011478999999997 99999988766666 7899999999886533
No 19
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.77 E-value=5.6e-18 Score=147.65 Aligned_cols=139 Identities=11% Similarity=0.099 Sum_probs=115.0
Q ss_pred CCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC
Q 014901 202 NEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI 281 (416)
Q Consensus 202 ~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV 281 (416)
+|+.+|.|.+++. +|+.++++++ +++++||.|++..|||.|+.++..|++++.+++ |+
T Consensus 2 ~G~~aP~f~l~~~-------------------~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~ 59 (143)
T cd03014 2 VGDKAPDFTLVTS-------------------DLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NT 59 (143)
T ss_pred CCCCCCCcEEECC-------------------CCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CC
Confidence 5778886666554 4899999996 678999999999999999999999999998873 99
Q ss_pred eEEEEecCChhhHHhhhcC-CC-CCceeeeccc-hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC
Q 014901 282 QLFAVLHEYIESEVKDFWP-RY-WGGVVVYDQG-MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE 358 (416)
Q Consensus 282 ~LVaIspEs~~~~ik~F~~-~~-l~f~VLsDp~-r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD 358 (416)
.+|+|+.+.... .++|.+ .. ..|++++|+. .++.++||+.. +. .
T Consensus 60 ~vi~Is~d~~~~-~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~-------------~~-------------------~ 106 (143)
T cd03014 60 VVLTISADLPFA-QKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI-------------KD-------------------L 106 (143)
T ss_pred EEEEEECCCHHH-HHHHHHhcCCCCceEeecCcccHHHHHhCCee-------------cc-------------------C
Confidence 999999988664 677775 34 3789999997 99999999841 11 1
Q ss_pred CcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHH
Q 014901 359 GEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEI 396 (416)
Q Consensus 359 ~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaA 396 (416)
+...|++||||++| +|+|.|+..+..+.++++++|++
T Consensus 107 ~~~~~~~~iid~~G-~I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 107 GLLARAVFVIDENG-KVIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred CccceEEEEEcCCC-eEEEEEECCCcccCCCHHHHhhC
Confidence 22357999999996 99999999999999999999863
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.75 E-value=2.1e-17 Score=146.29 Aligned_cols=150 Identities=11% Similarity=0.150 Sum_probs=119.1
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
....|+.+|.+.+++. +|+.+++.++ +++++||.|++..|||.|+.++..|.+...++.+
T Consensus 3 ~~~~g~~~p~f~l~~~-------------------~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~ 62 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQ-------------------DGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK 62 (154)
T ss_pred cCCCCCcCCCcEeeCC-------------------CCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH
Confidence 3466888886655554 4899999995 7789999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 014901 279 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 357 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~G 357 (416)
.|+++|+|+.++.+. +++|.+ ++++|++++|++..++++||+.- . +.. .|.. +
T Consensus 63 ~~v~vi~Is~d~~~~-~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~-----------~-~~~---------~~~~--~-- 116 (154)
T PRK09437 63 AGVVVLGISTDKPEK-LSRFAEKELLNFTLLSDEDHQVAEQFGVWG-----------E-KKF---------MGKT--Y-- 116 (154)
T ss_pred CCCEEEEEcCCCHHH-HHHHHHHhCCCCeEEECCCchHHHHhCCCc-----------c-ccc---------cccc--c--
Confidence 999999999998765 778775 77899999999999999999841 0 110 0000 0
Q ss_pred CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 014901 358 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT 398 (416)
Q Consensus 358 D~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk 398 (416)
....|.+||||++| +|++.|.+....++ .+++|++++
T Consensus 117 -~~~~~~~~lid~~G-~i~~~~~g~~~~~~--~~~~~~~~~ 153 (154)
T PRK09437 117 -DGIHRISFLIDADG-KIEHVFDKFKTSNH--HDVVLDYLK 153 (154)
T ss_pred -cCcceEEEEECCCC-EEEEEEcCCCcchh--HHHHHHHHh
Confidence 11246899999996 99999988766654 688888875
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.75 E-value=1.7e-17 Score=142.90 Aligned_cols=127 Identities=19% Similarity=0.106 Sum_probs=107.7
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeeecc
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQ 311 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~-~l~f~VLsDp 311 (416)
+|++++++++ +++++||+|++..|||+|..++..|.++++++++.|+.+|+|+.++++. ++.|.+ . .++|++++|+
T Consensus 11 ~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~-~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 11 DGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFS-HKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred CCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhcccCCCceEEECC
Confidence 4999999998 7789999999999999999999999999999999999999999988764 777775 5 7899999999
Q ss_pred chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHH
Q 014901 312 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLA 391 (416)
Q Consensus 312 ~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~ 391 (416)
+..++++||+.. . |.. |+....|.+||||++| +|+|.|.+.++ ++...+
T Consensus 89 ~~~~~~~~g~~~-----------~-~~~-----------------~~~~~~p~~~lid~~g-~i~~~~~~~~~-~~~~~~ 137 (140)
T cd02971 89 DGEFAKAYGVLI-----------E-KSA-----------------GGGLAARATFIIDPDG-KIRYVEVEPLP-TGRNAE 137 (140)
T ss_pred ChHHHHHcCCcc-----------c-ccc-----------------ccCceeEEEEEECCCC-cEEEEEecCCC-CCcChH
Confidence 999999999852 0 110 3445678999999996 89999999998 555555
Q ss_pred HH
Q 014901 392 EV 393 (416)
Q Consensus 392 eV 393 (416)
.+
T Consensus 138 ~~ 139 (140)
T cd02971 138 EL 139 (140)
T ss_pred hh
Confidence 43
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.74 E-value=2e-17 Score=142.66 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=105.5
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccc
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 312 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~ 312 (416)
+|+.++++++ +++++||.|++..|||.|..++..|++.++++.+.|+++|+|+.++.+. +++|.+ .+++|++++|++
T Consensus 12 ~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~-~~~~~~~~~~~~~~l~D~~ 89 (140)
T cd03017 12 DGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVES-HAKFAEKYGLPFPLLSDPD 89 (140)
T ss_pred CCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCceEEECCc
Confidence 5999999996 5789999999999999999999999999999999999999999998865 788885 788999999999
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 014901 313 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE 392 (416)
Q Consensus 313 r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~e 392 (416)
++++++||+.. . +. .|.+...|.+||||++| +|++.|.+...+. ++++
T Consensus 90 ~~~~~~~gv~~-----------~-~~-----------------~~~~~~~p~~~lid~~G-~v~~~~~g~~~~~--~~~~ 137 (140)
T cd03017 90 GKLAKAYGVWG-----------E-KK-----------------KKYMGIERSTFLIDPDG-KIVKVWRKVKPKG--HAEE 137 (140)
T ss_pred cHHHHHhCCcc-----------c-cc-----------------cccCCcceeEEEECCCC-EEEEEEecCCccc--hHHH
Confidence 99999999852 0 00 12334568999999996 8999998776433 3455
Q ss_pred HH
Q 014901 393 VI 394 (416)
Q Consensus 393 VL 394 (416)
+|
T Consensus 138 ~~ 139 (140)
T cd03017 138 VL 139 (140)
T ss_pred Hh
Confidence 54
No 23
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.72 E-value=1.2e-16 Score=148.92 Aligned_cols=153 Identities=13% Similarity=0.071 Sum_probs=121.4
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
+...|+.+|.|.+++. +. +.+|++++|+++ +++++||+||+..|||.|..++.+|++...+|++
T Consensus 5 ~~~~G~~aPdF~~~~~-~~--------------~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~ 68 (199)
T PTZ00253 5 DAKINHPAPSFEEVAL-MP--------------NGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE 68 (199)
T ss_pred ccccCCcCCCCEeecc-cc--------------CCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3467889997766543 11 235789999995 6779999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhc--C------CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcC
Q 014901 279 LGIQLFAVLHEYIESEVKDFW--P------RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLG 350 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~--~------~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G 350 (416)
.|+++|+|+.++... ...|. . +.++||+++|+++++.++||+.. +.
T Consensus 69 ~g~~vv~IS~d~~~~-~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~-------------~~------------ 122 (199)
T PTZ00253 69 LNCEVLACSMDSEYA-HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLE-------------EE------------ 122 (199)
T ss_pred cCCEEEEEeCCCHHH-HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcc-------------cC------------
Confidence 999999999987754 33332 1 14899999999999999999831 00
Q ss_pred CccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 351 VEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 351 ~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
++...|++||||++| +|++.+++... ...+++++|++++.++.
T Consensus 123 -------~g~~~r~~fiID~~G-~i~~~~~~~~~-~~r~~~e~l~~l~a~~~ 165 (199)
T PTZ00253 123 -------QGVAYRGLFIIDPKG-MLRQITVNDMP-VGRNVEEVLRLLEAFQF 165 (199)
T ss_pred -------CCceEEEEEEECCCC-EEEEEEecCCC-CCCCHHHHHHHHHhhhh
Confidence 123458999999996 89999998655 44588999999988864
No 24
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.70 E-value=1.7e-16 Score=138.49 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=115.2
Q ss_pred CCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC
Q 014901 201 VNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG 280 (416)
Q Consensus 201 ~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG 280 (416)
++|+.+|.+.+++. +.+|+++++++ ++++++||.|+...|||.|+.++..|.++...+...|
T Consensus 1 k~G~~~P~~~~~~~-----------------~~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~ 62 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-----------------DLDGKPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG 62 (146)
T ss_dssp STTSB--CCEEEEE-----------------ETTSEEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCeEEEee-----------------cCCCCEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc
Confidence 57888885554443 22599999999 7888999999999999999999999999988889999
Q ss_pred CeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC
Q 014901 281 IQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG 359 (416)
Q Consensus 281 V~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~ 359 (416)
+.+|+|+.+.... +.+|.. ...+|+++.|++..+.++||+.- .. + .+.+
T Consensus 63 v~~v~v~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----------~~-~------------------~~~~ 112 (146)
T PF08534_consen 63 VDVVGVSSDDDPP-VREFLKKYGINFPVLSDPDGALAKALGVTI----------ME-D------------------PGNG 112 (146)
T ss_dssp CEEEEEEESSSHH-HHHHHHHTTTTSEEEEETTSHHHHHTTCEE----------EC-C------------------TTTT
T ss_pred eEEEEecccCCHH-HHHHHHhhCCCceEEechHHHHHHHhCCcc----------cc-c------------------cccC
Confidence 9999999877665 777775 78899999999999999999740 00 0 0122
Q ss_pred cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHH
Q 014901 360 EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI 394 (416)
Q Consensus 360 lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVL 394 (416)
+..|.+||||++| +|+|.|...+..+..++++||
T Consensus 113 ~~~P~~~lId~~G-~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 113 FGIPTTFLIDKDG-KVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp SSSSEEEEEETTS-BEEEEEESSBTTSHHSHHHHH
T ss_pred CeecEEEEEECCC-EEEEEEeCCCCCCCCChhhcC
Confidence 5689999999997 999999999883366666665
No 25
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.57 E-value=3.8e-14 Score=127.92 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=105.9
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--------hhhHHhhhcC-CCCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--------IESEVKDFWP-RYWG 304 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs--------~~~~ik~F~~-~~l~ 304 (416)
+|+++++.++-+++++||+|+ ..|||.|..++..|.++.+++++.++++|+|+.+. ++ .++.|.+ ..++
T Consensus 13 ~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~-~~~~~~~~~~~~ 90 (171)
T cd02969 13 DGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPE-NMKAKAKEHGYP 90 (171)
T ss_pred CCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHH-HHHHHHHHCCCC
Confidence 488999999756666555555 89999999999999999999998999999999754 33 3666664 6788
Q ss_pred ceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCC
Q 014901 305 GVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNF 384 (416)
Q Consensus 305 f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~ 384 (416)
|++++|+++.+.+.||+.. .|.+||||++| +|+|.+...+.
T Consensus 91 ~~~l~D~~~~~~~~~~v~~--------------------------------------~P~~~lid~~G-~v~~~~~~~~~ 131 (171)
T cd02969 91 FPYLLDETQEVAKAYGAAC--------------------------------------TPDFFLFDPDG-KLVYRGRIDDS 131 (171)
T ss_pred ceEEECCchHHHHHcCCCc--------------------------------------CCcEEEECCCC-eEEEeecccCC
Confidence 9999999999999888731 25699999996 89988754432
Q ss_pred ----CCCCCHHHHHHHHHhhhhhhcccc
Q 014901 385 ----GDWAPLAEVIEICTQLQDQQRDQS 408 (416)
Q Consensus 385 ----gDrad~~eVLaAlk~l~~~~~~~~ 408 (416)
..++..+++.++++++....+..-
T Consensus 132 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 159 (171)
T cd02969 132 RPGNDPPVTGRDLRAALDALLAGKPVPV 159 (171)
T ss_pred cccccccccHHHHHHHHHHHHcCCCCCc
Confidence 357888999999988766554433
No 26
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.1e-14 Score=133.46 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=128.5
Q ss_pred CCCCCCCCccccccccccccchhhhccccccccCCC---CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 200 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKT---PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 200 ~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G---~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
+..|+++|.|..+... .| .+|++.+... +.+||+||.-...|.|-.|+.++++.+++|
T Consensus 3 ~lIg~~aP~F~~~a~~------------------~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF 63 (194)
T COG0450 3 SLIGKKAPDFTANAVL------------------GGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEF 63 (194)
T ss_pred cccCCcCCCcEEEEEe------------------cCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHH
Confidence 3567788866654441 25 3999999777 899999999999999999999999999999
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-----C---CCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHh
Q 014901 277 DALGIQLFAVLHEYIESEVKDFWP-----R---YWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRART 348 (416)
Q Consensus 277 ~alGV~LVaIspEs~~~~ik~F~~-----~---~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~ 348 (416)
+++|+++|+||-++... +..|.. . .++||+++|+++++.++||+- .|..
T Consensus 64 ~~~g~eVigvS~Ds~fs-H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl-------------~~~~--------- 120 (194)
T COG0450 64 QKRGVEVIGVSTDSVFS-HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVL-------------HPEE--------- 120 (194)
T ss_pred HHcCCEEEEEecCcHHH-HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCc-------------ccCC---------
Confidence 99999999999998765 666652 2 389999999999999999984 2321
Q ss_pred cCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 014901 349 LGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS 414 (416)
Q Consensus 349 ~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~~~----------~~~~~~~~~~ 414 (416)
+..+.|+||||++| .|++..++...-.| +++|+|..+++++-.. ++|.+||+.+
T Consensus 121 ----------g~a~R~~FIIDp~g-~ir~~~v~~~~iGR-n~dEilR~idAlq~~~~hg~vcPanW~~G~~~i~p~ 184 (194)
T COG0450 121 ----------GLALRGTFIIDPDG-VIRHILVNPLTIGR-NVDEILRVIDALQFVAKHGEVCPANWKPGDKTIKPS 184 (194)
T ss_pred ----------CcceeEEEEECCCC-eEEEEEEecCCCCc-CHHHHHHHHHHHHHHHHhCCCccCCCCCCCccccCC
Confidence 22466999999997 99999999877444 4699999998887322 6677777655
No 27
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.9e-14 Score=132.21 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=122.0
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
....|+.+|+++|+|- +|.+|+|.++..++|||++||...-.|.|..+++.+++.+++|++
T Consensus 62 ~v~~Gd~iPD~tL~de-------------------dg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk 122 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDE-------------------DGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK 122 (211)
T ss_pred eeecCCcCCCcccccC-------------------CCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh
Confidence 3467888886655554 699999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 014901 279 LGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 357 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~G 357 (416)
+|+.++++|.++... .+.|.. .+|||.+|+||.+++.+.||..+. .+
T Consensus 123 a~aeV~GlS~D~s~s-qKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~----p~--------------------------- 170 (211)
T KOG0855|consen 123 AGAEVIGLSGDDSAS-QKAFASKQNLPYHLLSDPKNEVIKDLGAPKD----PF--------------------------- 170 (211)
T ss_pred cCceEEeeccCchHH-HHHhhhhccCCeeeecCcchhHHHHhCCCCC----CC---------------------------
Confidence 999999999988764 788985 889999999999999999998631 11
Q ss_pred CCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHH
Q 014901 358 EGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICT 398 (416)
Q Consensus 358 D~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk 398 (416)
.++.....||++.|| +.-.+.+..+.-...+++.++.+.
T Consensus 171 gg~~~Rsh~if~kg~--~k~~ik~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 171 GGLPGRSHYIFDKGG--VKQLIKNNQISPEVSVDEALKFLK 209 (211)
T ss_pred CCcccceEEEEecCC--eEEEEEecccCccccHHHHHHHHh
Confidence 122234799999874 666777777888888888777664
No 28
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.54 E-value=1.1e-13 Score=123.74 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=110.2
Q ss_pred CCCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhh
Q 014901 198 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFD 277 (416)
Q Consensus 198 ~a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~ 277 (416)
.++.+++.+|.+.+.+. +|+.+++.++ +++++||.|+ ..|||+|+.+...|.+...++.
T Consensus 33 ~~~~~g~~~p~~~~~~~-------------------~g~~~~l~~~-~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~ 91 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDL-------------------EGKKIELKDL-KGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYK 91 (173)
T ss_pred cccCCCCCCCCcEeecC-------------------CCCEEeHHHc-CCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhh
Confidence 45667777775555444 4899999995 6677888777 8999999999999999999999
Q ss_pred hcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 014901 278 ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK 356 (416)
Q Consensus 278 alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~ 356 (416)
+.++++|+|+.+.....+..|.. ..++|+++.|++..+.++||+.
T Consensus 92 ~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---------------------------------- 137 (173)
T PRK03147 92 EKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG---------------------------------- 137 (173)
T ss_pred cCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC----------------------------------
Confidence 98999999998766555677765 6789999999999999988773
Q ss_pred CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhh
Q 014901 357 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQ 401 (416)
Q Consensus 357 GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~ 401 (416)
..|.+||||++| +|++.+.+.. +.+++.+.+..++
T Consensus 138 ----~~P~~~lid~~g-~i~~~~~g~~-----~~~~l~~~l~~~~ 172 (173)
T PRK03147 138 ----PLPTTFLIDKDG-KVVKVITGEM-----TEEQLEEYLEKIK 172 (173)
T ss_pred ----CcCeEEEECCCC-cEEEEEeCCC-----CHHHHHHHHHHhc
Confidence 136899999996 8998876643 4567777776665
No 29
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.54 E-value=3.4e-14 Score=122.21 Aligned_cols=106 Identities=16% Similarity=0.163 Sum_probs=88.5
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec------CChhhHHhhhcC-CCCCcee
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH------EYIESEVKDFWP-RYWGGVV 307 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp------Es~~~~ik~F~~-~~l~f~V 307 (416)
|++|+++++ +++++||.|+ ..|||.|+.++..|.+++.++.+.|+.+|+|+. ++++ .+++|.+ +.++|++
T Consensus 13 ~~~v~l~~~-~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~-~~~~~~~~~~~~~p~ 89 (126)
T cd03012 13 DKPLSLAQL-RGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLA-NVKSAVLRYGITYPV 89 (126)
T ss_pred CCccCHHHh-CCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHH-HHHHHHHHcCCCCCE
Confidence 689999997 7777777776 679999999999999999999999999999964 2344 3667765 7899999
Q ss_pred eeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 014901 308 VYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 382 (416)
Q Consensus 308 LsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~ 382 (416)
++|++..++++||+.. .|.+||||++| +|+|.|.++
T Consensus 90 ~~D~~~~~~~~~~v~~--------------------------------------~P~~~vid~~G-~v~~~~~G~ 125 (126)
T cd03012 90 ANDNDYATWRAYGNQY--------------------------------------WPALYLIDPTG-NVRHVHFGE 125 (126)
T ss_pred EECCchHHHHHhCCCc--------------------------------------CCeEEEECCCC-cEEEEEecC
Confidence 9999999999887630 36899999996 899999865
No 30
>PLN02412 probable glutathione peroxidase
Probab=99.45 E-value=1.3e-12 Score=118.84 Aligned_cols=136 Identities=9% Similarity=0.037 Sum_probs=93.2
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--------ChhhHHhhhc-CCCCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--------YIESEVKDFW-PRYWG 304 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE--------s~~~~ik~F~-~~~l~ 304 (416)
+|+.++++++ +++++||.|+ ..|||+|+.++..|++++.++++.|+.+|+|+.. +.+...+.|. ++.++
T Consensus 18 ~G~~v~l~~~-~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (167)
T PLN02412 18 GGNDVSLNQY-KGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE 95 (167)
T ss_pred CCCEEeHHHh-CCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCC
Confidence 4999999996 6666777776 8999999999999999999999999999999852 3333233443 36899
Q ss_pred ceeeec--cch-HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCC-cccceEEEEecCCCcEEEEEe
Q 014901 305 GVVVYD--QGM-EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEG-EIKGGLFIVGRGRSGIAYQFI 380 (416)
Q Consensus 305 f~VLsD--p~r-~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~-lqlGGtFVId~gG~~I~yah~ 380 (416)
|||++| ++. .....|+.- +....|. .|.. ...|.+||||++| +|++.|.
T Consensus 96 fpvl~~~d~~g~~~~~~~~~~----------------------~~~~~~~----~~~~v~~~p~tflId~~G-~vv~~~~ 148 (167)
T PLN02412 96 FPIFDKVDVNGKNTAPLYKYL----------------------KAEKGGL----FGDAIKWNFTKFLVSKEG-KVVQRYA 148 (167)
T ss_pred CceEeEEeeCCCCCCHHHHHH----------------------HhhCCCC----CCCCcCCCCeeEEECCCC-cEEEEEC
Confidence 999984 442 433333221 0000111 1111 1257899999997 8999997
Q ss_pred cCCCCCCCCHHHHHHHHHhhhhh
Q 014901 381 ERNFGDWAPLAEVIEICTQLQDQ 403 (416)
Q Consensus 381 d~d~gDrad~~eVLaAlk~l~~~ 403 (416)
+. .+.+++.+.++.+.+|
T Consensus 149 g~-----~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 149 PT-----TSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CC-----CCHHHHHHHHHHHHhh
Confidence 44 4567777777766543
No 31
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.43 E-value=2.4e-12 Score=118.71 Aligned_cols=122 Identities=18% Similarity=0.124 Sum_probs=91.9
Q ss_pred CCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 014901 200 PVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 279 (416)
Q Consensus 200 ~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al 279 (416)
..+|+.+|.+.+++. + .+|+.+++.++++++++||.|+ ..|||.|+.++..|.+. .+.
T Consensus 39 ~~~g~~~p~f~l~~~-----~------------g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l----~~~ 96 (185)
T PRK15412 39 ALIGKPVPKFRLESL-----E------------NPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQL----SAQ 96 (185)
T ss_pred hhcCCCCCCcCCccC-----C------------CCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHH----HHc
Confidence 456777776666555 1 2367777777777788888888 89999999999998765 456
Q ss_pred CCeEEEEecCChhhHHhhhcC-CCCCce-eeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCC
Q 014901 280 GIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKG 357 (416)
Q Consensus 280 GV~LVaIspEs~~~~ik~F~~-~~l~f~-VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~G 357 (416)
|+++|+|+.+.....+++|.+ +.++|+ ++.|++..+.++||+.
T Consensus 97 ~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~----------------------------------- 141 (185)
T PRK15412 97 GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY----------------------------------- 141 (185)
T ss_pred CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC-----------------------------------
Confidence 999999995433233677775 678888 5889998888777663
Q ss_pred CCcccceEEEEecCCCcEEEEEecC
Q 014901 358 EGEIKGGLFIVGRGRSGIAYQFIER 382 (416)
Q Consensus 358 D~lqlGGtFVId~gG~~I~yah~d~ 382 (416)
-.|.+||||++| +|+|.|.+.
T Consensus 142 ---~~P~t~vid~~G-~i~~~~~G~ 162 (185)
T PRK15412 142 ---GAPETFLIDGNG-IIRYRHAGD 162 (185)
T ss_pred ---cCCeEEEECCCc-eEEEEEecC
Confidence 036899999997 899999875
No 32
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.42 E-value=2.1e-12 Score=117.58 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=96.4
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
++.+|..+|.|.+++. . .++..++++++.+++++||.|+ ..|||.|+.+...|.+. .+
T Consensus 33 ~~~vG~~ap~f~l~~~-----~------------G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l----~~ 90 (173)
T TIGR00385 33 SALIGKPVPAFPLAAL-----R------------EPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNEL----AK 90 (173)
T ss_pred chhcCCCCCCcccccc-----C------------CCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHH----HH
Confidence 3466778887766655 1 1223566667767777777777 89999999998887654 45
Q ss_pred cCCeEEEEecCChhhHHhhhcC-CCCCce-eeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccC
Q 014901 279 LGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFK 356 (416)
Q Consensus 279 lGV~LVaIspEs~~~~ik~F~~-~~l~f~-VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~ 356 (416)
.|+++|+|+.+........|.+ +.++|+ ++.|++..+.++||+.
T Consensus 91 ~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~---------------------------------- 136 (173)
T TIGR00385 91 DGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY---------------------------------- 136 (173)
T ss_pred cCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe----------------------------------
Confidence 6899999996543333556664 678887 6789999988877662
Q ss_pred CCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 014901 357 GEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL 400 (416)
Q Consensus 357 GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l 400 (416)
..|.+|+||++| +|+|.|.+. .+.+++.+.++.+
T Consensus 137 ----~~P~~~~id~~G-~i~~~~~G~-----~~~~~l~~~l~~~ 170 (173)
T TIGR00385 137 ----GAPETFLVDGNG-VILYRHAGP-----LNNEVWTEGFLPA 170 (173)
T ss_pred ----eCCeEEEEcCCc-eEEEEEecc-----CCHHHHHHHHHHH
Confidence 036899999996 899998874 3455555555443
No 33
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.40 E-value=2.1e-12 Score=119.67 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=99.2
Q ss_pred CCCCCCCCCCccccccccccccchhhhccccccccCCCCceechh-hccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 198 APPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALE-LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 198 ~a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsd-L~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
.++.+|+.+|.|.+++. +|+.+++++ ..+++|+||.|+ ..|||.|+.++..+.+..
T Consensus 44 ~~~~vG~~aP~f~l~d~-------------------~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~--- 100 (189)
T TIGR02661 44 HGPDVGDAAPIFNLPDF-------------------DGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIA--- 100 (189)
T ss_pred cCCCCCCcCCCcEecCC-------------------CCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHH---
Confidence 35678888996666555 489999975 356677777775 899999999999998865
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcccc
Q 014901 277 DALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNF 355 (416)
Q Consensus 277 ~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~ 355 (416)
++.|+++++|+.++.+. +++|.+ +.++|+.|. .+..+.++||+.
T Consensus 101 ~~~~~~vv~Is~~~~~~-~~~~~~~~~~~~~~~~-~~~~i~~~y~v~--------------------------------- 145 (189)
T TIGR02661 101 RAEETDVVMISDGTPAE-HRRFLKDHELGGERYV-VSAEIGMAFQVG--------------------------------- 145 (189)
T ss_pred HhcCCcEEEEeCCCHHH-HHHHHHhcCCCcceee-chhHHHHhccCC---------------------------------
Confidence 34588999999877664 677775 667777665 455666655542
Q ss_pred CCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhhhhh
Q 014901 356 KGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQLQDQ 403 (416)
Q Consensus 356 ~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l~~~ 403 (416)
.+|.+||||++| +|++... ...+.+++++|++++.-.+.
T Consensus 146 -----~~P~~~lID~~G-~I~~~g~---~~~~~~le~ll~~l~~~~~~ 184 (189)
T TIGR02661 146 -----KIPYGVLLDQDG-KIRAKGL---TNTREHLESLLEADREGFAS 184 (189)
T ss_pred -----ccceEEEECCCC-eEEEccC---CCCHHHHHHHHHHHHcCcch
Confidence 146789999996 8988532 23344578888887665443
No 34
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.37 E-value=8.6e-12 Score=117.11 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=91.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC-CCCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP-RYWG 304 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp--------Es~~~~ik~F~~-~~l~ 304 (416)
+|+.|+++++ +++ +||++|...|||+|+.++..|.++..++.+.|+++|+|+. ++++ .++.|.+ ++++
T Consensus 28 ~G~~vsL~~~-kGk-vvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e-~~~~f~~~~~~~ 104 (199)
T PTZ00056 28 EGTTVPMSSL-KNK-VLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTK-DIRKFNDKNKIK 104 (199)
T ss_pred CCCEEeHHHh-CCC-EEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHH-HHHHHHHHcCCC
Confidence 4999999996 554 5666667899999999999999999999999999999985 3444 3778875 7899
Q ss_pred ceeeecc------chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 014901 305 GVVVYDQ------GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ 378 (416)
Q Consensus 305 f~VLsDp------~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~ya 378 (416)
|++++|. ...+|+.++-.. ..+ . +..+...+-.+ .+.+||||++| +|++.
T Consensus 105 fpvl~d~~v~g~~~~~l~~~l~~~~-------~~~-~--------------d~~~~~~~i~~-~~~tflID~~G-~iv~~ 160 (199)
T PTZ00056 105 YNFFEPIEVNGENTHELFKFLKANC-------DSM-H--------------DENGTLKAIGW-NFGKFLVNKSG-NVVAY 160 (199)
T ss_pred ceeeeeeeccCCccCHHHHHHHHhC-------ccc-c--------------cccccCCccCC-CCEEEEECCCC-cEEEE
Confidence 9999873 445555443110 000 0 00000000001 14799999997 89887
Q ss_pred EecCCCCCCCCHHHHHHHHHhhh
Q 014901 379 FIERNFGDWAPLAEVIEICTQLQ 401 (416)
Q Consensus 379 h~d~d~gDrad~~eVLaAlk~l~ 401 (416)
|... .+++++.+.++.+-
T Consensus 161 ~~g~-----~~~~~l~~~I~~ll 178 (199)
T PTZ00056 161 FSPR-----TEPLELEKKIAELL 178 (199)
T ss_pred eCCC-----CCHHHHHHHHHHHH
Confidence 7543 35566666665553
No 35
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.35 E-value=3.5e-12 Score=110.23 Aligned_cols=119 Identities=13% Similarity=0.076 Sum_probs=87.1
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhcC---CeEEEEecCC----hhhHHhhhcC-CCCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDALG---IQLFAVLHEY----IESEVKDFWP-RYWG 304 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cn~el~~Ls~~~peL~alG---V~LVaIspEs----~~~~ik~F~~-~~l~ 304 (416)
+|+++++.++ +++++||+| ...||+. |+.++..|++...++.+.| +++|+|+.+. ++ .+++|.+ ...+
T Consensus 11 ~g~~~~l~~~-~gk~~vl~f-~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~-~~~~~~~~~~~~ 87 (142)
T cd02968 11 DGRPVTLSDL-KGKPVLVYF-GYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPE-VLKAYAKAFGPG 87 (142)
T ss_pred CCCEEchHHh-CCCEEEEEE-EcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHH-HHHHHHHHhCCC
Confidence 5899999997 655555554 5599997 9999999999999999876 9999999643 34 3677775 5678
Q ss_pred ceeeeccc---hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 014901 305 GVVVYDQG---MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI 380 (416)
Q Consensus 305 f~VLsDp~---r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~ 380 (416)
|++++|+. ..+.++||+.. . |... +. ..++....|++||||++| +|++.|.
T Consensus 88 ~~~l~~~~~~~~~~~~~~g~~~-----------~-~~~~---------~~---~~~~~~~~~~~~lid~~G-~i~~~~~ 141 (142)
T cd02968 88 WIGLTGTPEEIEALAKAFGVYY-----------E-KVPE---------DD---GDYLVDHSAAIYLVDPDG-KLVRYYG 141 (142)
T ss_pred cEEEECCHHHHHHHHHHhcEEE-----------E-ecCC---------CC---CceeEeccceEEEECCCC-CEEEeec
Confidence 99999986 78999999841 0 1100 00 001112357999999997 8999885
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.34 E-value=1.5e-11 Score=113.43 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--------ChhhHHhhhc--CCCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--------YIESEVKDFW--PRYW 303 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE--------s~~~~ik~F~--~~~l 303 (416)
+|+.|+++++ +++++||+|+-..|||+|+.++..|++++.+++..|+.+|+|+.. +.+ .+..|. +.++
T Consensus 29 ~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~-~~~~f~~~~~~~ 106 (183)
T PTZ00256 29 DGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP-EIKEYVQKKFNV 106 (183)
T ss_pred CCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH-HHHHHHHHhcCC
Confidence 4999999996 667777666568899999999999999999999999999999853 223 366664 3688
Q ss_pred Cceeeec--cc----hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc---eEEEEecCCCc
Q 014901 304 GGVVVYD--QG----MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG---GLFIVGRGRSG 374 (416)
Q Consensus 304 ~f~VLsD--p~----r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlG---GtFVId~gG~~ 374 (416)
+|++++| ++ ..+|+-|+-.. +.-+...|...-+| .+||||++| +
T Consensus 107 ~fpv~~d~d~~g~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~~iP~~~~tflID~~G-~ 159 (183)
T PTZ00256 107 DFPLFQKIEVNGENTHEIYKYLRRNS--------------------------ELFQNNTNEARQIPWNFAKFLIDGQG-K 159 (183)
T ss_pred CCCCceEEecCCCCCCHHHHHHHhhC--------------------------CCCcCccccCcccCcceEEEEECCCC-C
Confidence 9999976 33 34554332210 00000011111234 589999997 8
Q ss_pred EEEEEecCCCCCCCCHHHHHHHHHh
Q 014901 375 IAYQFIERNFGDWAPLAEVIEICTQ 399 (416)
Q Consensus 375 I~yah~d~d~gDrad~~eVLaAlk~ 399 (416)
|++.|.+. .+.+++.+.+..
T Consensus 160 Iv~~~~g~-----~~~~~l~~~I~~ 179 (183)
T PTZ00256 160 VVKYFSPK-----VNPNEMIQDIEK 179 (183)
T ss_pred EEEEECCC-----CCHHHHHHHHHH
Confidence 99999863 244455444443
No 37
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.32 E-value=1.4e-11 Score=119.32 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=104.1
Q ss_pred cCCCCCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccc
Q 014901 195 CIQAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKP 274 (416)
Q Consensus 195 ~~~~a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~p 274 (416)
++......++.+|.+.+++. +|+.++++++ +++++||+|+ ..|||.|+.++.+|++++.
T Consensus 68 ~~~~~~~~g~~aPdF~l~d~-------------------~G~~vsLsd~-kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~ 126 (236)
T PLN02399 68 GVYARAATEKSVHDFTVKDI-------------------DGKDVALSKF-KGKVLLIVNV-ASKCGLTSSNYSELSHLYE 126 (236)
T ss_pred ccccchhcCCCCCceEEECC-------------------CCCEEeHHHh-CCCeEEEEEE-cCCCcchHHHHHHHHHHHH
Confidence 34333456777886666555 4999999996 6678888888 8999999999999999999
Q ss_pred hhhhcCCeEEEEecC--------ChhhHHhhhc--CCCCCceeeeccc--h-HHHHHhCCCcccccccccccccCHHHHH
Q 014901 275 IFDALGIQLFAVLHE--------YIESEVKDFW--PRYWGGVVVYDQG--M-EFFKALGGGKLLKDKFLSGFLLNPRAIA 341 (416)
Q Consensus 275 eL~alGV~LVaIspE--------s~~~~ik~F~--~~~l~f~VLsDp~--r-~lYkALGl~r~~r~s~~sgfll~P~v~~ 341 (416)
++++.|+++|+|... +.+ .++.|. +.+++|+|+.|.+ . .....|++.
T Consensus 127 ~~~~~Gv~VIgV~~d~~~~~e~~s~~-ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l------------------- 186 (236)
T PLN02399 127 KYKTQGFEILAFPCNQFGGQEPGSNP-EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFL------------------- 186 (236)
T ss_pred HHhcCCcEEEEEecccccccCCCCHH-HHHHHHHHhcCCCCccccccCCCcchhhHHHHHH-------------------
Confidence 999999999999952 333 477885 3678999996533 2 332322210
Q ss_pred HHHHHHhcCCccccCCCC-cccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 014901 342 NYKRARTLGVEQNFKGEG-EIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL 400 (416)
Q Consensus 342 ~~~rA~~~G~~gn~~GD~-lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l 400 (416)
+....|+ .|+. .-.|-+||||++| +|++.|... .+.+++.+.++.+
T Consensus 187 ---~~~~~~~----~g~~i~~~PttfLIDk~G-kVv~~~~G~-----~~~~~le~~I~~l 233 (236)
T PLN02399 187 ---KSNAGGF----LGDLIKWNFEKFLVDKNG-KVVERYPPT-----TSPFQIEKDIQKL 233 (236)
T ss_pred ---HHhcCCc----cCCccccCceEEEECCCC-cEEEEECCC-----CCHHHHHHHHHHH
Confidence 0000111 1221 1247899999997 899999754 2556776666655
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.30 E-value=2.1e-11 Score=104.24 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=80.8
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCce-eeeccc
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGV-VVYDQG 312 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~-VLsDp~ 312 (416)
+++++++++ +++++||.|+ ..|||.|+.++..|.+...+ .++++|+|+.+.....+++|.+ ..++|+ ++.|++
T Consensus 15 ~~~~~~~~~-~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~---~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 89 (127)
T cd03010 15 DKTLTSADL-KGKPYLLNVW-ASWCAPCREEHPVLMALARQ---GRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD 89 (127)
T ss_pred CccccHHHc-CCCEEEEEEE-cCcCHHHHHHHHHHHHHHHh---cCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc
Confidence 378888886 6778888888 89999999999999876543 3599999996444334777774 566775 779999
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 014901 313 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 382 (416)
Q Consensus 313 r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~ 382 (416)
..+.++||+. .+|.+|+||++| +|++.+.+.
T Consensus 90 ~~~~~~~~v~--------------------------------------~~P~~~~ld~~G-~v~~~~~G~ 120 (127)
T cd03010 90 GRVGIDLGVY--------------------------------------GVPETFLIDGDG-IIRYKHVGP 120 (127)
T ss_pred chHHHhcCCC--------------------------------------CCCeEEEECCCc-eEEEEEecc
Confidence 8888877663 147899999996 899998874
No 39
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.29 E-value=6.8e-12 Score=111.71 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=82.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW 303 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp--------Es~~~~ik~F~~--~~l 303 (416)
+|++++++++ +++++||.| ...||| |+.++..|+++++++++.|+.+|+|+. ++++ .+++|.+ .++
T Consensus 11 ~G~~v~l~~~-~Gk~vvl~f-watwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~-~~~~f~~~~~~~ 86 (152)
T cd00340 11 DGEPVSLSKY-KGKVLLIVN-VASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNE-EIKEFCETNYGV 86 (152)
T ss_pred CCCEEeHHHh-CCCEEEEEE-EcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHH-HHHHHHHHhcCC
Confidence 5999999996 555555555 599999 999999999999999999999999985 2344 3788874 578
Q ss_pred Cceeeeccch--H-HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 014901 304 GGVVVYDQGM--E-FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI 380 (416)
Q Consensus 304 ~f~VLsDp~r--~-lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~ 380 (416)
+||+++|++. . .+++||... .++++-..+.....+.+||||++| +|++.|.
T Consensus 87 ~fp~~~d~d~~~~~~~~~~~~~~-------------------------~~~p~~~~~~~~~~~ttflId~~G-~i~~~~~ 140 (152)
T cd00340 87 TFPMFAKIDVNGENAHPLYKYLK-------------------------EEAPGLLGKDIKWNFTKFLVDRDG-EVVKRFA 140 (152)
T ss_pred CceeeeeEeccCCCCChHHHHHH-------------------------hcCCCCCCCccccccEEEEECCCC-cEEEEEC
Confidence 9999998532 1 333333200 001100001111135799999997 8999988
Q ss_pred cC
Q 014901 381 ER 382 (416)
Q Consensus 381 d~ 382 (416)
+.
T Consensus 141 G~ 142 (152)
T cd00340 141 PT 142 (152)
T ss_pred CC
Confidence 85
No 40
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.25 E-value=4.1e-11 Score=106.65 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=88.8
Q ss_pred CCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CC
Q 014901 233 TKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RY 302 (416)
Q Consensus 233 ~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp--------Es~~~~ik~F~~--~~ 302 (416)
.+|++++++++ +++++||+ +--.|||+|..++.+|.+++.++.+.|+.+|+|.+ ++.+ .++.|.+ .+
T Consensus 10 ~~G~~~~l~~~-~Gk~vvv~-~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~-~~~~f~~~~~~ 86 (153)
T TIGR02540 10 ARGRTVSLEKY-RGKVSLVV-NVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSK-EIESFARRNYG 86 (153)
T ss_pred CCCCEecHHHh-CCCEEEEE-EeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHH-HHHHHHHHhcC
Confidence 35999999996 66665555 45899999999999999999999999999999984 4444 3788884 58
Q ss_pred CCceeeecc---chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccc----eEEEEecCCCcE
Q 014901 303 WGGVVVYDQ---GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKG----GLFIVGRGRSGI 375 (416)
Q Consensus 303 l~f~VLsDp---~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlG----GtFVId~gG~~I 375 (416)
++||+++|. +.....+++. ... .. + ..| .+||||++| +|
T Consensus 87 ~~fp~~~d~~~~~~~~~~~~~~----------------------~~~---~~-----~---~~p~~~~~tflID~~G-~v 132 (153)
T TIGR02540 87 VTFPMFSKIKILGSEAEPAFRF----------------------LVD---SS-----K---KEPRWNFWKYLVNPEG-QV 132 (153)
T ss_pred CCCCccceEecCCCCCCcHHHH----------------------HHh---cC-----C---CCCCCccEEEEEcCCC-cE
Confidence 999999883 2222111111 000 00 0 123 499999997 89
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHhh
Q 014901 376 AYQFIERNFGDWAPLAEVIEICTQL 400 (416)
Q Consensus 376 ~yah~d~d~gDrad~~eVLaAlk~l 400 (416)
++.|... .+.+++.+.++.+
T Consensus 133 ~~~~~g~-----~~~~~l~~~i~~l 152 (153)
T TIGR02540 133 VKFWRPE-----EPVEEIRPEITAL 152 (153)
T ss_pred EEEECCC-----CCHHHHHHHHHHh
Confidence 9998775 3567776666543
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.24 E-value=4.6e-11 Score=99.75 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=73.5
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCC-Cceeeecc
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYW-GGVVVYDQ 311 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l-~f~VLsDp 311 (416)
+|+.+++.++.+++|+||.|+ ..|||.|+.++..|.++..+. +.++.+|+|+.++.+. .+.|.+ ..+ .++++.|
T Consensus 9 ~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~p~~~~- 84 (114)
T cd02967 9 DGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAE-HQRFLKKHGLEAFPYVLS- 84 (114)
T ss_pred CCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHH-HHHHHHHhCCCCCcEEec-
Confidence 599999999754667777776 899999999999998876655 3478999998666654 666664 445 3676653
Q ss_pred chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEE
Q 014901 312 GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQF 379 (416)
Q Consensus 312 ~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah 379 (416)
..+.++||+. .+|.+||||++| +|+|..
T Consensus 85 -~~~~~~~~~~--------------------------------------~~P~~~vid~~G-~v~~~~ 112 (114)
T cd02967 85 -AELGMAYQVS--------------------------------------KLPYAVLLDEAG-VIAAKG 112 (114)
T ss_pred -HHHHhhcCCC--------------------------------------CcCeEEEECCCC-eEEecc
Confidence 2344444331 158999999996 888753
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.23 E-value=7.8e-11 Score=95.00 Aligned_cols=105 Identities=22% Similarity=0.227 Sum_probs=85.0
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--hhhHHhhhcC-CCCCceeeec
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--IESEVKDFWP-RYWGGVVVYD 310 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs--~~~~ik~F~~-~~l~f~VLsD 310 (416)
+|+.+++.++ .++++|| +|...||+.|...+..|.++..++.+.++.+++|+.+. .+ .++.|.. ..++++++.|
T Consensus 8 ~g~~~~~~~~-~~k~~ll-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~~~~~~~~~~~~~~ 84 (116)
T cd02966 8 DGKPVSLSDL-KGKVVLV-NFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPA-AVKAFLKKYGITFPVLLD 84 (116)
T ss_pred CCCEeehHHc-CCCEEEE-EeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHH-HHHHHHHHcCCCcceEEc
Confidence 5899999997 4555544 55578999999999999999999988899999999877 44 4777764 6789999999
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEe
Q 014901 311 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFI 380 (416)
Q Consensus 311 p~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~ 380 (416)
++..+++.||+. ..|.+||+|++| +|++.+.
T Consensus 85 ~~~~~~~~~~~~--------------------------------------~~P~~~l~d~~g-~v~~~~~ 115 (116)
T cd02966 85 PDGELAKAYGVR--------------------------------------GLPTTFLIDRDG-RIRARHV 115 (116)
T ss_pred CcchHHHhcCcC--------------------------------------ccceEEEECCCC-cEEEEec
Confidence 999998887763 135789999996 8988774
No 43
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.1e-10 Score=105.49 Aligned_cols=143 Identities=18% Similarity=0.244 Sum_probs=116.8
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhh------HHhhhcC---CCCCc
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIES------EVKDFWP---RYWGG 305 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~------~ik~F~~---~~l~f 305 (416)
-..+.+-+.+.+...||+--.+...|.|..|+.+++++.|+|++.||+++|.|.++.++ -++.|.+ +.++|
T Consensus 21 ~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~Wi~DIks~~~~~~~~~~y 100 (224)
T KOG0854|consen 21 VGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKDWIKDIKSYAKVKNHSVPY 100 (224)
T ss_pred ccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHHHHHHHHHHHhccCCCCCC
Confidence 34788999889988888777777999999999999999999999999999999988765 2344443 45999
Q ss_pred eeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCC
Q 014901 306 VVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFG 385 (416)
Q Consensus 306 ~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~g 385 (416)
||+.|+.+.++=.||+- +|.-. +-.|++....++||||++. +|+..+..+...
T Consensus 101 PIIaD~~rela~~l~Ml-------------D~~e~-------------~~~~~~~T~Ravfvi~pdk-KirLs~lYP~tt 153 (224)
T KOG0854|consen 101 PIIADPNRELAFLLNML-------------DPEEK-------------KNIGDGKTVRAVFVIDPDK-KIRLSFLYPSTT 153 (224)
T ss_pred CeecCCchhhhhhhccc-------------CHhHc-------------CCCCCCceEEEEEEECCCc-eEEEEEEccccc
Confidence 99999999999988873 44421 2236677789999999995 999999988776
Q ss_pred CCCCHHHHHHHHHhhhhhhc
Q 014901 386 DWAPLAEVIEICTQLQDQQR 405 (416)
Q Consensus 386 Drad~~eVLaAlk~l~~~~~ 405 (416)
.| +.+|||.++..++=.+.
T Consensus 154 GR-N~dEiLRvidsLqlt~~ 172 (224)
T KOG0854|consen 154 GR-NFDEILRVIDSLQLTDK 172 (224)
T ss_pred Cc-CHHHHHHHHHHHhhhcc
Confidence 66 57999999999875553
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.08 E-value=1.2e-09 Score=92.47 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcC-CCCCceeeec
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWP-RYWGGVVVYD 310 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE--s~~~~ik~F~~-~~l~f~VLsD 310 (416)
+|+.+++.++ +++++||.|+ ..|||.|+.++..|++...+ +++++|+-+ +.+ .++.|.+ ..++|+++.|
T Consensus 9 ~g~~~~~~~~-~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 9 DGEQFDLESL-SGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDG-AVARFMQKKGYGFPVIND 80 (123)
T ss_pred CCCEeeHHHh-CCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHH-HHHHHHHHcCCCccEEEC
Confidence 5889999985 5678888888 88999999999999887655 577888743 233 3666764 6789999999
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecC
Q 014901 311 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIER 382 (416)
Q Consensus 311 p~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~ 382 (416)
++.++.+.||+.. .|..||+|++ + |++.+.+.
T Consensus 81 ~~~~~~~~~~i~~--------------------------------------~P~~~vid~~-g-i~~~~~g~ 112 (123)
T cd03011 81 PDGVISARWGVSV--------------------------------------TPAIVIVDPG-G-IVFVTTGV 112 (123)
T ss_pred CCcHHHHhCCCCc--------------------------------------ccEEEEEcCC-C-eEEEEecc
Confidence 9999998877631 3789999988 3 88887754
No 45
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.2e-09 Score=98.63 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=113.8
Q ss_pred cccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-----CCC-
Q 014901 230 LVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-----RYW- 303 (416)
Q Consensus 230 ~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-----~~l- 303 (416)
+|+..=+.++|.++ ..+-+|+.||...+...|=.+..++++..++|++.|+++++||.++.-. +.+|.. .++
T Consensus 18 VVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fs-hlAW~ntprk~gGlg 95 (196)
T KOG0852|consen 18 VVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFS-HLAWINTPRKQGGLG 95 (196)
T ss_pred EEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhh-hhhHhcCchhhCCcC
Confidence 34544568899996 5578999999999999999999999999999999999999999988765 566652 344
Q ss_pred --CceeeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEec
Q 014901 304 --GGVVVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIE 381 (416)
Q Consensus 304 --~f~VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d 381 (416)
..|+++|+++++.+.||+-. + .+|..+.|.||||++| .++-.-++
T Consensus 96 ~~~iPllsD~~~~IsrdyGvL~-------------~-------------------~~G~~lRglfIId~~g-i~R~it~N 142 (196)
T KOG0852|consen 96 PLNIPLLSDLNHEISRDYGVLK-------------E-------------------DEGIALRGLFIIDPDG-ILRQITIN 142 (196)
T ss_pred ccccceeeccchhhHHhcCcee-------------c-------------------CCCcceeeeEEEcccc-ceEEeeec
Confidence 48999999999999999831 1 1244567999999996 55544443
Q ss_pred CCCCCCCCHHHHHHHHHhhhhhh----------cccccccccc
Q 014901 382 RNFGDWAPLAEVIEICTQLQDQQ----------RDQSETIKTS 414 (416)
Q Consensus 382 ~d~gDrad~~eVLaAlk~l~~~~----------~~~~~~~~~~ 414 (416)
. ..---.++|+|..+++.|-.. .+||.|||..
T Consensus 143 D-lpvgRSVdE~lRLvqAfQ~td~~geVcPagW~pgs~tikp~ 184 (196)
T KOG0852|consen 143 D-LPVGRSVDETLRLVQAFQFTDEHGEVCPAGWKPGSDTIKPD 184 (196)
T ss_pred c-cCCCccHHHHHHHHHHHhhhhccCccccCCCCCCCcccCCC
Confidence 3 333345788888888776333 6788999864
No 46
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.94 E-value=2.9e-09 Score=91.71 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=61.8
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC-C---CCCc
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP-R---YWGG 305 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al--GV~LVaIspEs~~~~ik~F~~-~---~l~f 305 (416)
+.+|+.|+++++ +++++||.|+ ..|||.|+.++..|++++.++... ++++|+|+.+......+.|.. . .++|
T Consensus 5 ~~~G~~v~l~~~-~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~ 82 (131)
T cd03009 5 RNDGGKVPVSSL-EGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPF 82 (131)
T ss_pred ccCCCCccHHHh-CCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEccc
Confidence 457999999996 6666666666 589999999999999999988875 788999997765444455443 1 1233
Q ss_pred eeeeccchHHHHHhCC
Q 014901 306 VVVYDQGMEFFKALGG 321 (416)
Q Consensus 306 ~VLsDp~r~lYkALGl 321 (416)
+. +|+...++++||+
T Consensus 83 ~~-~~~~~~~~~~~~v 97 (131)
T cd03009 83 SD-RERRSRLNRTFKI 97 (131)
T ss_pred CC-HHHHHHHHHHcCC
Confidence 22 3455566666665
No 47
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.91 E-value=1.3e-08 Score=108.49 Aligned_cols=117 Identities=12% Similarity=0.161 Sum_probs=86.4
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-----ChhhHHhhhcC--CCCCce
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-----YIESEVKDFWP--RYWGGV 306 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE-----s~~~~ik~F~~--~~l~f~ 306 (416)
+|+.+.++ +++||||.|+ ..|||.|+.++..|.++..+.+..|+++|+|+-+ .....++.|.. ++..++
T Consensus 47 dG~~v~ls---kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~p 122 (521)
T PRK14018 47 RPASVYLK---KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLP 122 (521)
T ss_pred CCceeecc---CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccc
Confidence 48888876 5566666655 8999999999999999988887778999999742 11112444443 233578
Q ss_pred eeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC
Q 014901 307 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD 386 (416)
Q Consensus 307 VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gD 386 (416)
++.|++..++++||+. -+|.+||||++| .|++.+.+.-
T Consensus 123 V~~D~~~~lak~fgV~--------------------------------------giPTt~IIDkdG-kIV~~~~G~~--- 160 (521)
T PRK14018 123 VLTDNGGTLAQSLNIS--------------------------------------VYPSWAIIGKDG-DVQRIVKGSI--- 160 (521)
T ss_pred eeccccHHHHHHcCCC--------------------------------------CcCeEEEEcCCC-eEEEEEeCCC---
Confidence 9999999999988773 147899999996 8999998863
Q ss_pred CCCHHHHHHHHH
Q 014901 387 WAPLAEVIEICT 398 (416)
Q Consensus 387 rad~~eVLaAlk 398 (416)
+.++|.+.++
T Consensus 161 --~~eeL~a~Ie 170 (521)
T PRK14018 161 --SEAQALALIR 170 (521)
T ss_pred --CHHHHHHHHH
Confidence 4466666555
No 48
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.77 E-value=2.6e-08 Score=86.42 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=48.7
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcC
Q 014901 236 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWP 300 (416)
Q Consensus 236 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al--GV~LVaIspEs~~~~ik~F~~ 300 (416)
++|+++++ +++++||.|+ ..||+.|+.++..|++.+.+++.. ++.+|+|+.+.....++.|..
T Consensus 8 ~~v~l~~~-~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 8 GVVPVSAL-EGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred ccccHHHh-CCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHh
Confidence 59999986 5555555555 999999999999999998888775 789999987654434666664
No 49
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.69 E-value=6.2e-08 Score=87.65 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=72.1
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc-------CCeEEEEecCChhhHHhhhcC-CC--CCc
Q 014901 236 PPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-------GIQLFAVLHEYIESEVKDFWP-RY--WGG 305 (416)
Q Consensus 236 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al-------GV~LVaIspEs~~~~ik~F~~-~~--l~f 305 (416)
+.++++++ ++++++|.|. -.|||.|+.++-.|.+.+.++.+. ++.+|+|+.+......++|.+ .. |++
T Consensus 16 ~~~~ls~~-kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~ 93 (146)
T cd03008 16 EREIVARL-ENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLF 93 (146)
T ss_pred ccccHHHh-CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCcee
Confidence 45677775 6677777776 889999999999999988777653 789999997654444666664 44 434
Q ss_pred eeeec-cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEE
Q 014901 306 VVVYD-QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQ 378 (416)
Q Consensus 306 ~VLsD-p~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~ya 378 (416)
+.+.| .+..+.++||+. -+|.+||||++| +|+..
T Consensus 94 ~p~~~~~~~~l~~~y~v~--------------------------------------~iPt~vlId~~G-~Vv~~ 128 (146)
T cd03008 94 LPFEDEFRRELEAQFSVE--------------------------------------ELPTVVVLKPDG-DVLAA 128 (146)
T ss_pred ecccchHHHHHHHHcCCC--------------------------------------CCCEEEEECCCC-cEEee
Confidence 33333 345677766652 157899999996 77754
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.64 E-value=3.6e-07 Score=85.57 Aligned_cols=107 Identities=10% Similarity=0.001 Sum_probs=75.7
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeec-cc
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD-QG 312 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsD-p~ 312 (416)
+|+.++++++- ||+|+. .|||+|+.++..|.+...++ |+.+++|+-+.. ....||++.| ++
T Consensus 62 dG~~v~lsd~~-----lV~Fwa-swCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~---------~~~~fPv~~dd~~ 123 (181)
T PRK13728 62 NGRQVNLADWK-----VVLFMQ-GHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQ---------GDTAFPEALPAPP 123 (181)
T ss_pred CCCEeehhHce-----EEEEEC-CCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCC---------CCCCCceEecCch
Confidence 59999999973 555665 99999999999999876665 799999996532 1357899985 66
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEE-EEecCCCCCCCCHH
Q 014901 313 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAY-QFIERNFGDWAPLA 391 (416)
Q Consensus 313 r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~y-ah~d~d~gDrad~~ 391 (416)
..+.+.||.. ....|.+||||++| .|.+ .|++. .+.+
T Consensus 124 ~~~~~~~g~~------------------------------------~~~iPttfLId~~G-~i~~~~~~G~-----~~~~ 161 (181)
T PRK13728 124 DVMQTFFPNI------------------------------------PVATPTTFLVNVNT-LEALPLLQGA-----TDAA 161 (181)
T ss_pred hHHHHHhCCC------------------------------------CCCCCeEEEEeCCC-cEEEEEEECC-----CCHH
Confidence 6666666531 01258999999997 7765 67774 3344
Q ss_pred HHHHHHHhh
Q 014901 392 EVIEICTQL 400 (416)
Q Consensus 392 eVLaAlk~l 400 (416)
++-+.+..+
T Consensus 162 ~L~~~I~~l 170 (181)
T PRK13728 162 GFMARMDTV 170 (181)
T ss_pred HHHHHHHHH
Confidence 554444444
No 51
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.57 E-value=3.2e-07 Score=85.80 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=64.0
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcC--CCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWP--RYW 303 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp--------Es~~~~ik~F~~--~~l 303 (416)
+|++++|+++ +++++||+| --.||++|. ++.+|++++.++.+.|+.++||.. ++.+ .+++|.. .++
T Consensus 14 ~G~~v~Ls~~-~GKvvLVvf-~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~-ei~~f~~~~~g~ 89 (183)
T PRK10606 14 DGEVTTLEKY-AGNVLLIVN-VASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE-EIKTYCRTTWGV 89 (183)
T ss_pred CCCEEeHHHh-CCCEEEEEE-EeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH-HHHHHHHHccCC
Confidence 5999999995 666655555 788999996 688999999999999999999976 3333 4888884 578
Q ss_pred Cceeeeccc------hHHHHHh
Q 014901 304 GGVVVYDQG------MEFFKAL 319 (416)
Q Consensus 304 ~f~VLsDp~------r~lYkAL 319 (416)
+|+|++|-+ .-+|+-|
T Consensus 90 ~Fpv~~k~dvnG~~~~pl~~~L 111 (183)
T PRK10606 90 TFPMFSKIEVNGEGRHPLYQKL 111 (183)
T ss_pred CceeEEEEccCCCCCCHHHHHH
Confidence 999995544 2477765
No 52
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.55 E-value=5.2e-07 Score=103.53 Aligned_cols=121 Identities=16% Similarity=0.162 Sum_probs=88.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC------ChhhHHhhhcC-CCCCce
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE------YIESEVKDFWP-RYWGGV 306 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE------s~~~~ik~F~~-~~l~f~ 306 (416)
+|+++++.+-++++++||.| --.|||.|+.++..|.++..+++..|+.+|+|+.. ..+ .++.|.. ..++|+
T Consensus 408 ~g~~~~l~~~lkGK~vll~F-WAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~-~~~~~~~~~~i~~p 485 (1057)
T PLN02919 408 NTAPLQFRRDLKGKVVILDF-WTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLE-AIRNAVLRYNISHP 485 (1057)
T ss_pred CCccccchhhcCCCEEEEEE-ECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHH-HHHHHHHHhCCCcc
Confidence 48899986445666555554 56799999999999999999998889999999621 222 3555654 678999
Q ss_pred eeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCC
Q 014901 307 VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGD 386 (416)
Q Consensus 307 VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gD 386 (416)
++.|.+..+++.||+. -+|.+||||++| +|++.+.+.. .
T Consensus 486 vv~D~~~~~~~~~~V~--------------------------------------~iPt~ilid~~G-~iv~~~~G~~--~ 524 (1057)
T PLN02919 486 VVNDGDMYLWRELGVS--------------------------------------SWPTFAVVSPNG-KLIAQLSGEG--H 524 (1057)
T ss_pred EEECCchHHHHhcCCC--------------------------------------ccceEEEECCCC-eEEEEEeccc--C
Confidence 9999999998887763 146899999997 8988877642 2
Q ss_pred CCCHHHHHHHH
Q 014901 387 WAPLAEVIEIC 397 (416)
Q Consensus 387 rad~~eVLaAl 397 (416)
...++++++.+
T Consensus 525 ~~~l~~~l~~~ 535 (1057)
T PLN02919 525 RKDLDDLVEAA 535 (1057)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 53
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.52 E-value=5e-07 Score=84.83 Aligned_cols=119 Identities=13% Similarity=-0.031 Sum_probs=85.9
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeE------EEEecCCh----hhHHhhhcC-CCC
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQL------FAVLHEYI----ESEVKDFWP-RYW 303 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~L------VaIspEs~----~~~ik~F~~-~~l 303 (416)
.++++.++|- |++.|+-|=-.||+-|+.+.-.|.++ +++|+.+ ++|..+.. ...++.|.+ ...
T Consensus 49 y~~~~~~~l~--GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~ 122 (184)
T TIGR01626 49 YQPWGSAELA--GKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKK 122 (184)
T ss_pred ceeccHHHcC--CCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcc
Confidence 5688888874 67777777788999999999888876 6678888 99987652 222444443 445
Q ss_pred Cce---eeeccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceE-EEEecCCCcEEEEE
Q 014901 304 GGV---VVYDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGL-FIVGRGRSGIAYQF 379 (416)
Q Consensus 304 ~f~---VLsDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGt-FVId~gG~~I~yah 379 (416)
.|| ++.|++..+..+||+.. +|-+ ||||++| +|+|.|
T Consensus 123 ~~P~~~vllD~~g~v~~~~gv~~--------------------------------------~P~T~fVIDk~G-kVv~~~ 163 (184)
T TIGR01626 123 ENPWSQVVLDDKGAVKNAWQLNS--------------------------------------EDSAIIVLDKTG-KVKFVK 163 (184)
T ss_pred cCCcceEEECCcchHHHhcCCCC--------------------------------------CCceEEEECCCC-cEEEEE
Confidence 565 99999999988888741 2345 9999997 899999
Q ss_pred ecCCCCCCCCHHHHHHHHHhh
Q 014901 380 IERNFGDWAPLAEVIEICTQL 400 (416)
Q Consensus 380 ~d~d~gDrad~~eVLaAlk~l 400 (416)
.+.-. ..++++++..++++
T Consensus 164 ~G~l~--~ee~e~~~~li~~l 182 (184)
T TIGR01626 164 EGALS--DSDIQTVISLVNGL 182 (184)
T ss_pred eCCCC--HHHHHHHHHHHHHH
Confidence 99632 22445566666554
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.20 E-value=1.1e-05 Score=65.34 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=44.5
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcC-CCCCceeee
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVY 309 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~-alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLs 309 (416)
++++++|=..||+.|+.++..|.+++.++. ..++++|+|+.+.-....+++.+ ..+++..+.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~ 65 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVP 65 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEe
Confidence 456666777899999999999999999888 77899999998754334555554 434554433
No 55
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.6e-05 Score=72.68 Aligned_cols=140 Identities=10% Similarity=0.122 Sum_probs=106.5
Q ss_pred CCCCCCCCCCCccccccccccccchhhhccccccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 197 QAPPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 197 ~~a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
...+++|+++|.|.|-+-+ .+.+++.+ .++++.||..|..--.|.|-.+++.+++....+
T Consensus 15 g~~~~vGd~ap~ftl~~~d-------------------L~~v~l~~-~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~ 74 (158)
T COG2077 15 GNEPQVGDKAPDFTLVGKD-------------------LNDVSLAD-FAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL 74 (158)
T ss_pred CCCCccCCcCCceEEEcCc-------------------ccceeccc-cCCceEEEEEccCCCCchhhHHHHHHHHHHhcc
Confidence 4568999999977775553 45677787 477788999999999999999999999988777
Q ss_pred hhcCCeEEEEecCChhhHHhhhcC-CCCC-ceeeecc-chHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCcc
Q 014901 277 DALGIQLFAVLHEYIESEVKDFWP-RYWG-GVVVYDQ-GMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQ 353 (416)
Q Consensus 277 ~alGV~LVaIspEs~~~~ik~F~~-~~l~-f~VLsDp-~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~g 353 (416)
.. +.+..||.+.|-. .+.|+. +++. -..+||= ++.+-++||+.- ....+
T Consensus 75 ~~--~~Vl~IS~DLPFA-q~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I------------~egpL------------- 126 (158)
T COG2077 75 GN--TVVLCISMDLPFA-QKRFCGAEGIENVITLSDFRDRAFGENYGVLI------------NEGPL------------- 126 (158)
T ss_pred CC--cEEEEEeCCChhH-HhhhhhhcCcccceEhhhhhhhhhhHhhCEEe------------ccccc-------------
Confidence 54 8899999998864 688985 5654 5578884 455778888841 00000
Q ss_pred ccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCC
Q 014901 354 NFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAP 389 (416)
Q Consensus 354 n~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad 389 (416)
.++.-.++||+|.+| .|.|..+-++..++|+
T Consensus 127 ----~gLlARaV~V~De~g-~V~y~elv~eit~ePn 157 (158)
T COG2077 127 ----AGLLARAVFVLDENG-KVTYSELVPEITEEPN 157 (158)
T ss_pred ----cCeeeeEEEEEcCCC-cEEEEEccchhhcCCC
Confidence 023346999999996 8999999998888875
No 56
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.94 E-value=7.4e-05 Score=73.84 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchH
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME 314 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~ 314 (416)
.+...+.+| +++++||.||+. |||+|+.++..|.+...+. |+.+++|+-+.... . .|+.+ +.+..
T Consensus 156 ~~~~~l~~l-~~k~~Lv~F~As-wCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~--~-------~fp~~-~~d~~ 220 (271)
T TIGR02740 156 QKDRVMKDL-AKKSGLFFFFKS-DCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL--P-------GFPNA-RPDAG 220 (271)
T ss_pred HHHHHHHHh-cCCeEEEEEECC-CCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc--c-------cCCcc-cCCHH
Confidence 445777785 667888878775 9999999999998876554 78999998654221 1 14444 44555
Q ss_pred HHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHH
Q 014901 315 FFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVI 394 (416)
Q Consensus 315 lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVL 394 (416)
+.+.||+. .+|.+|+++++|+.|...+.+ ..+.++|.
T Consensus 221 la~~~gV~--------------------------------------~vPtl~Lv~~~~~~v~~v~~G-----~~s~~eL~ 257 (271)
T TIGR02740 221 QAQQLKIR--------------------------------------TVPAVFLADPDPNQFTPIGFG-----VMSADELV 257 (271)
T ss_pred HHHHcCCC--------------------------------------cCCeEEEEECCCCEEEEEEeC-----CCCHHHHH
Confidence 66666653 258999999954466555444 34556776
Q ss_pred HHHHhhh
Q 014901 395 EICTQLQ 401 (416)
Q Consensus 395 aAlk~l~ 401 (416)
+.+..+.
T Consensus 258 ~~i~~~a 264 (271)
T TIGR02740 258 DRILLAA 264 (271)
T ss_pred HHHHHHh
Confidence 6666553
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.87 E-value=0.00011 Score=66.87 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
.|+.+.+++. .||.|+. .|||+|+.++-.|.+...+. |+.+++|+-+.
T Consensus 43 ~G~~~~l~~~-----~lvnFWA-sWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~ 90 (153)
T TIGR02738 43 QGRHANQDDY-----ALVFFYQ-STCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG 90 (153)
T ss_pred cchhhhcCCC-----EEEEEEC-CCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC
Confidence 4777776654 3666665 69999999999999876554 78999998653
No 58
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.82 E-value=0.00012 Score=70.15 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=71.5
Q ss_pred ceechhhccCCCEEEE-ee-----cCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeee
Q 014901 237 PMKALELWRESPAVLL-CI-----RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVY 309 (416)
Q Consensus 237 ~VsLsdL~~~~pvVLv-Fy-----Rg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLs 309 (416)
+|+|.||+.++..+|+ .| +..+||.|...+..+.-..+.|.+.++.+|+||...+++ +..|.+ .+|.|+.||
T Consensus 57 ~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~-i~afk~rmGW~~pw~S 135 (211)
T PF05988_consen 57 PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEK-IEAFKRRMGWTFPWYS 135 (211)
T ss_pred cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHH-HHHHHHhcCCCceEEE
Confidence 5999999998764333 22 245899999999999888999999999999999999986 899986 899999999
Q ss_pred ccchHHHHHhCCC
Q 014901 310 DQGMEFFKALGGG 322 (416)
Q Consensus 310 Dp~r~lYkALGl~ 322 (416)
.-+..+-..||..
T Consensus 136 s~gs~Fn~D~~~~ 148 (211)
T PF05988_consen 136 SYGSDFNYDFGVS 148 (211)
T ss_pred cCCCcccccccce
Confidence 9988887776663
No 59
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.52 E-value=0.00023 Score=59.25 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=27.4
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChh
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIE 292 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~---~~peL~alGV~LVaIspEs~~ 292 (416)
++|+||+|+ ..|||+|+..-.++.+ ....++. ++.+|.+..+...
T Consensus 5 ~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 52 (112)
T PF13098_consen 5 GKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSR 52 (112)
T ss_dssp SSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcc
Confidence 456666664 8999999977777764 3334432 5677777765443
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.23 E-value=0.0024 Score=54.60 Aligned_cols=110 Identities=13% Similarity=0.128 Sum_probs=60.8
Q ss_pred hhccCC-CEEEEeecCCCCcchHHHHHHHHh---ccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHHH
Q 014901 242 ELWRES-PAVLLCIRRPGCIMCRAEAHQLYA---KKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK 317 (416)
Q Consensus 242 dL~~~~-pvVLvFyRg~gCP~Cn~el~~Ls~---~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lYk 317 (416)
+..+++ +.|+++|-..||++|+.....+.+ +...++ .++.++.|..+.... +..| +-..++...+..
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~~~-~~~~-------~~~~~~~~~l~~ 78 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGDKE-VTDF-------DGEALSEKELAR 78 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCCce-eecc-------CCCCccHHHHHH
Confidence 334455 445555568999999999887753 333343 256666665443221 1111 111123334444
Q ss_pred HhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHH
Q 014901 318 ALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEIC 397 (416)
Q Consensus 318 ALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAl 397 (416)
+||+. -.|.+++++++||.+...+.+. .+.+++.+.+
T Consensus 79 ~~~v~--------------------------------------~~Pt~~~~~~~gg~~~~~~~G~-----~~~~~~~~~l 115 (125)
T cd02951 79 KYRVR--------------------------------------FTPTVIFLDPEGGKEIARLPGY-----LPPDEFLAYL 115 (125)
T ss_pred HcCCc--------------------------------------cccEEEEEcCCCCceeEEecCC-----CCHHHHHHHH
Confidence 33331 1578999999833777766553 3456777777
Q ss_pred Hhhhhh
Q 014901 398 TQLQDQ 403 (416)
Q Consensus 398 k~l~~~ 403 (416)
+.+.++
T Consensus 116 ~~~~~~ 121 (125)
T cd02951 116 EYVQEK 121 (125)
T ss_pred HHHHhh
Confidence 766544
No 61
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.01 E-value=0.0012 Score=58.87 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=53.5
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh--hHHhhhcCCCCCceeeeccc
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE--SEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~--~~ik~F~~~~l~f~VLsDp~ 312 (416)
+....+.+....+..||++|-..||+.|+.....|.++..++.. .+.+|.|.-+... ...+.|.-..+|.-++.|++
T Consensus 8 ~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 8 ASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred hccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 45666776666555555566688999999999999988777654 3677777654321 22455544677877888865
Q ss_pred hH
Q 014901 313 ME 314 (416)
Q Consensus 313 r~ 314 (416)
.+
T Consensus 87 G~ 88 (142)
T cd02950 87 GN 88 (142)
T ss_pred CC
Confidence 43
No 62
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.0015 Score=63.18 Aligned_cols=86 Identities=14% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCceechhhccCCCEEE--EeecC----CCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCcee
Q 014901 235 TPPMKALELWRESPAVL--LCIRR----PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVV 307 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVL--vFyRg----~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~V 307 (416)
.-+++|.||++++--+| .|.-+ -+||.|..-+.++--..+-|+..+|.||+|+....++ +..|.. .+|.|+.
T Consensus 61 ~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~-l~~~k~rmGW~f~w 139 (247)
T COG4312 61 NGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEE-LVAYKRRMGWQFPW 139 (247)
T ss_pred CcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHH-HHHHHHhcCCccee
Confidence 34899999999765433 23333 3899999999999999999999999999999888875 777775 8999999
Q ss_pred eeccchHHHHHhCC
Q 014901 308 VYDQGMEFFKALGG 321 (416)
Q Consensus 308 LsDp~r~lYkALGl 321 (416)
+|+.+..|=+.|.+
T Consensus 140 ~Ss~~s~Fn~Df~v 153 (247)
T COG4312 140 VSSTDSDFNRDFQV 153 (247)
T ss_pred EeccCccccccccc
Confidence 99999998887766
No 63
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.86 E-value=0.022 Score=54.30 Aligned_cols=137 Identities=14% Similarity=0.130 Sum_probs=80.8
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhh---hcCCeEEEEec----CChhhHHhhhcC-CC
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFD---ALGIQLFAVLH----EYIESEVKDFWP-RY 302 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cn~el~~Ls~~~peL~---alGV~LVaIsp----Es~~~~ik~F~~-~~ 302 (416)
+.+|+++++..| +++|+||+|. ..-|| .|...+..|.+...++. ...+++|.|+- ++++ .+++|.. ++
T Consensus 54 d~~G~~~~~~~l-~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~-~lk~Y~~~~~ 130 (207)
T COG1999 54 DQDGKPFTLKDL-KGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPE-VLKKYAELNF 130 (207)
T ss_pred cCCCCEeecccc-CCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHH-HHHHHhcccC
Confidence 557999999998 5567666553 34566 89999999988888777 55566777873 3433 2555544 22
Q ss_pred CC-ceee---eccchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCC-C-cccceEEEEecCCCcEE
Q 014901 303 WG-GVVV---YDQGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGE-G-EIKGGLFIVGRGRSGIA 376 (416)
Q Consensus 303 l~-f~VL---sDp~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD-~-lqlGGtFVId~gG~~I~ 376 (416)
.+ +.-+ .+.-.+++++|++-. + .+..+-.++ . -.-...|+||++| .+.
T Consensus 131 ~~~~~~ltg~~~~~~~~~k~~~V~~----~---------------------~v~~~~~~~y~~~Hs~~~~lid~~G-~~~ 184 (207)
T COG1999 131 DPRWIGLTGTPEQIEEVAKAYGVFY----S---------------------KVPLDDSQNYTIDHSAGFYLIDADG-RFL 184 (207)
T ss_pred CCCeeeeeCCHHHHHHHHHHhccee----e---------------------ecccCCCCCceeeeeeEEEEECCCC-eEE
Confidence 11 1111 222334445444420 0 000000011 1 1237899999996 666
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhhhh
Q 014901 377 YQFIERNFGDWAPLAEVIEICTQLQD 402 (416)
Q Consensus 377 yah~d~d~gDrad~~eVLaAlk~l~~ 402 (416)
..+..... +++|++.++.+.+
T Consensus 185 ~~~~~~~~-----~~~i~~~l~~l~~ 205 (207)
T COG1999 185 GTYDYGEP-----PEEIAADLKKLLK 205 (207)
T ss_pred EEecCCCC-----hHHHHHHHHHHhh
Confidence 66554433 7999999988754
No 64
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.86 E-value=0.0011 Score=61.11 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=54.4
Q ss_pred cccccCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC--eEEEEecCChhhHHhhhc
Q 014901 228 ERLVKTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI--QLFAVLHEYIESEVKDFW 299 (416)
Q Consensus 228 ~~~v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV--~LVaIspEs~~~~ik~F~ 299 (416)
+.+.+.+|..+..++-+++ ++|..+|+-.|||-||...-.|.+.+.++++.+. .||.||.+.-++....|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~g-KvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQG-KVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCC-cEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHH
Confidence 3444556777777776665 8999999999999999999999999998888764 477888776655455544
No 65
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=96.74 E-value=0.0084 Score=55.25 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=46.5
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCC-cchHHHHHHHHhccchhhhc--CCeEEEEec----CChhhHHhhhcC
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGC-IMCRAEAHQLYAKKPIFDAL--GIQLFAVLH----EYIESEVKDFWP 300 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gC-P~Cn~el~~Ls~~~peL~al--GV~LVaIsp----Es~~~~ik~F~~ 300 (416)
+.+|+++++.++ +++++||. |=...| -.|-..+..|+++..++.+. .+++|.||- ++++ .+++|.+
T Consensus 39 d~~G~~~~~~~~-~Gk~~lv~-F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~-~L~~Y~~ 111 (174)
T PF02630_consen 39 DQDGKTVTLDDL-KGKWVLVF-FGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE-VLKKYAK 111 (174)
T ss_dssp ETTSSEEEGGGG-TTSEEEEE-EE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH-HHHHHHH
T ss_pred cCCCCEecHHHh-CCCeEEEE-EEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH-HHHHHHH
Confidence 446999999885 55555554 444566 48999999999988888865 578899983 3444 3666664
No 66
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.46 E-value=0.0027 Score=53.15 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=42.9
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC-ChhhHHhhhcCCCCCceeeeccc
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE-YIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE-s~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
+-...++++ ||+.|-..||+.|+.....|.++..++. ++.++.|-.+ .-....+.|.-..+|--++.+.+
T Consensus 12 ~~~~~~g~~-vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 12 LMAFNREDY-TAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred HHHhcCCCE-EEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC
Confidence 333345555 4555568999999999999988777664 5777777544 22212333332455555666655
No 67
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.46 E-value=0.012 Score=56.57 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=37.2
Q ss_pred echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 014901 239 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 291 (416)
Q Consensus 239 sLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~ 291 (416)
.+.++ +++--+++|||+ .||||..++.-|+....+. |.++++||.+..
T Consensus 114 ~l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~ 161 (215)
T PF13728_consen 114 ALKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADKY---GFSVIPVSLDGR 161 (215)
T ss_pred HHHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHHh---CCEEEEEecCCC
Confidence 45565 455668888887 8999999999888776554 999999997653
No 68
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.39 E-value=0.004 Score=50.51 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=45.7
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh--cCCeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA--LGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a--lGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+.+...+++++|.|| ..||+.|+.....+.+...+++. ..+.++.|-.+......+.|.-..+|--++...+.
T Consensus 10 f~~~~~~~~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 10 FDHHIAEGNHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred HHHHhhcCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 344455667666655 78999999999999888777765 35677777655443323344334455444444443
No 69
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.39 E-value=0.0099 Score=49.98 Aligned_cols=67 Identities=7% Similarity=0.179 Sum_probs=43.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC-hhhHHhh-hcCCCCCceeeeccch
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY-IESEVKD-FWPRYWGGVVVYDQGM 313 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs-~~~~ik~-F~~~~l~f~VLsDp~r 313 (416)
+++++|. |-..|||.|+.....|.++...++..++.+..|-.+. ....... |.-..+|--++.+.+.
T Consensus 21 ~k~vlv~-f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~ 89 (109)
T cd02993 21 NQSTLVV-LYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNS 89 (109)
T ss_pred CCCEEEE-EECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCC
Confidence 3455555 5589999999999999888878876678888877654 2211222 3334556555555543
No 70
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.09 E-value=0.017 Score=44.38 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=41.5
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+++ |++|-..||+.|+.....|.+...+ ..++.++.|..+......+.|.-...|.-++.+.+.
T Consensus 11 ~~~-ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 11 KPV-VVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred CcE-EEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCCChhHHHhcCcccccEEEEEECCE
Confidence 455 4455557999999999988886655 457888888766543334445434556555555554
No 71
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.026 Score=52.29 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=70.1
Q ss_pred CCceechhhccCCCEEEEeecCCCCcc-hHHHHHHHHhccchhhhcCCeEEE-EecCChhhHHhhhcC-CC--CCceeee
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIM-CRAEAHQLYAKKPIFDALGIQLFA-VLHEYIESEVKDFWP-RY--WGGVVVY 309 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~-Cn~el~~Ls~~~peL~alGV~LVa-IspEs~~~~ik~F~~-~~--l~f~VLs 309 (416)
|.++++++|.+++++||+=..+...|- |..++--+-+...+|++.|+..|+ |+-.++= .++.|.+ .. =.-.+++
T Consensus 32 ~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnDpF-v~~aW~k~~g~~~~V~f~a 110 (171)
T KOG0541|consen 32 GNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVNDPF-VMKAWAKSLGANDHVKFVA 110 (171)
T ss_pred cceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCcHH-HHHHHHhhcCccceEEEEe
Confidence 458999999999999999999999999 677889999999999999999655 4545542 3566654 21 2345899
Q ss_pred ccchHHHHHhCCC
Q 014901 310 DQGMEFFKALGGG 322 (416)
Q Consensus 310 Dp~r~lYkALGl~ 322 (416)
|++.++.++||+.
T Consensus 111 D~~g~ftk~lgle 123 (171)
T KOG0541|consen 111 DPAGEFTKSLGLE 123 (171)
T ss_pred cCCCceeeeccce
Confidence 9999999999996
No 72
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.06 E-value=0.016 Score=47.54 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=47.3
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHH
Q 014901 242 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 242 dL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
.+.+++++|+++|-..||+.|+.....+.++..++.. ++.++.|-.+........+.-...|.-++.+.++.+
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4556677788888889999999999999887666643 466666665443332334433456665555544443
No 73
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.99 E-value=0.0061 Score=50.76 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=48.1
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHH
Q 014901 241 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 316 (416)
Q Consensus 241 sdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lY 316 (416)
.++...+..||+.|-..||+.|+.....|.++..++...++.++.|.-+..+ ..+.|.-...|.-++...+..+.
T Consensus 11 ~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~-~~~~~~v~~~Pt~~~~~~g~~~~ 85 (102)
T cd02948 11 EELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTID-TLKRYRGKCEPTFLFYKNGELVA 85 (102)
T ss_pred HHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHH-HHHHcCCCcCcEEEEEECCEEEE
Confidence 4444555666777788999999999999988777776445677777766443 35666544445333333343333
No 74
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.99 E-value=0.025 Score=45.41 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=50.8
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHH
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 316 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lY 316 (416)
++++||.||. .||+.|+.....|.++..++.. ++.++-|-.+......+.|.-..+|--++...+....
T Consensus 17 ~~~vvv~f~~-~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 17 DKPVVVYFYA-PWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp SSEEEEEEES-TTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred CCCEEEEEeC-CCCCccccccceeccccccccc-ccccchhhhhccchhhhccCCCCCCEEEEEECCcEEE
Confidence 4677777776 6999999999999999888887 8888888876554445555446667666666665544
No 75
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.01 Score=54.64 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=69.2
Q ss_pred CceechhhccCCCEEEEeecCCCCcchHH-HHHHHHhccchhhhcCCeE-EEEecCChhhHHhhhcC-CCC--Cceeeec
Q 014901 236 PPMKALELWRESPAVLLCIRRPGCIMCRA-EAHQLYAKKPIFDALGIQL-FAVLHEYIESEVKDFWP-RYW--GGVVVYD 310 (416)
Q Consensus 236 ~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~-el~~Ls~~~peL~alGV~L-VaIspEs~~~~ik~F~~-~~l--~f~VLsD 310 (416)
..++..+|++++++||+-+.+...|-|.. ++-.+.++.++|++.||.= ++|+-.++- ...+|.+ .+. ...++.|
T Consensus 27 ~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND~F-Vm~AWak~~g~~~~I~fi~D 105 (165)
T COG0678 27 VDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVNDAF-VMNAWAKSQGGEGNIKFIPD 105 (165)
T ss_pred ccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCcHH-HHHHHHHhcCCCccEEEecC
Confidence 47788999999999999999999999998 9999999999999999984 455544442 2445553 222 4458999
Q ss_pred cchHHHHHhCCC
Q 014901 311 QGMEFFKALGGG 322 (416)
Q Consensus 311 p~r~lYkALGl~ 322 (416)
.+.++-+++|+.
T Consensus 106 g~geFTk~~Gm~ 117 (165)
T COG0678 106 GNGEFTKAMGML 117 (165)
T ss_pred CCchhhhhcCce
Confidence 999999999985
No 76
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=95.77 E-value=0.016 Score=47.83 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=39.4
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh----hhHHhhhcCCCCCceeeecc
Q 014901 244 WRESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI----ESEVKDFWPRYWGGVVVYDQ 311 (416)
Q Consensus 244 ~~~~pvVLvFyRg~gCP~Cn~el~~L---s~~~peL~alGV~LVaIspEs~----~~~ik~F~~~~l~f~VLsDp 311 (416)
.+.+..||+.|-..||+.|+.....+ .+....+.. ++.++.|-.+.. ....+.|.-..+|--++.|+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 34444444455579999999987666 234445554 677777764331 11123333356777777775
No 77
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=95.66 E-value=0.019 Score=45.18 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=46.2
Q ss_pred chhhccCC-CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 240 ALELWRES-PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 240 LsdL~~~~-pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~-alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
+.+...++ ++||.|+. .||+.|+.....+.+....++ ..++.++.|-.+......+.|.-..+|--++.+++
T Consensus 8 ~~~~i~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 8 FDELVKDSKDVLVEFYA-PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHhCCCcEEEEEEC-CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 44555555 56666655 699999999999988777775 45677777766553222333332455555666666
No 78
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.53 E-value=0.038 Score=46.81 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=44.3
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
+..+|+.|-..||+.|+.....+.++..+++..++.++.|-.+........|.-...|--++...+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 345666667899999999999999888888766788888876544333344433444544444433
No 79
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=95.51 E-value=0.036 Score=44.77 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=40.2
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhh-hcCCeEEEEecCC-hhhHHhhhcCCCCCceeeeccc
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFD-ALGIQLFAVLHEY-IESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~-alGV~LVaIspEs-~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
++||.|+ ..||+.|+.....+.++..+++ ..++.++.|-... .....+.|.-..+|.-++.+++
T Consensus 20 ~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~ 85 (105)
T cd02998 20 DVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKG 85 (105)
T ss_pred cEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCC
Confidence 5666665 8999999999888888777765 2345666666544 2322344433555655555555
No 80
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=95.37 E-value=0.046 Score=37.76 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=40.7
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHh---hhcCCCCCceeeeccc
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVK---DFWPRYWGGVVVYDQG 312 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik---~F~~~~l~f~VLsDp~ 312 (416)
++|...||++|......+.+. .....++.++.|..+....... .+.....|.-++.|++
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred EEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 456678999999999999987 5666789999999776654222 2222455555666554
No 81
>PRK10996 thioredoxin 2; Provisional
Probab=95.34 E-value=0.025 Score=50.17 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=47.1
Q ss_pred eechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHH
Q 014901 238 MKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 238 VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
..+.++.++++.|+++|-..||+.|+.....|.++..++.. ++.++.|-.+......+.|.-..+|.-++.+.++.+
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 34555665555556666669999999998888877665543 466666655544432334433455555555545433
No 82
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=95.33 E-value=0.03 Score=48.41 Aligned_cols=71 Identities=21% Similarity=0.301 Sum_probs=44.7
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcCC--CCCceeeeccchHHHH
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWPR--YWGGVVVYDQGMEFFK 317 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~-~~ik~F~~~--~l~f~VLsDp~r~lYk 317 (416)
+++|++|.|+ ..||+.|+.....+.+... ..+.+..+|.|--+... ...+.|... ++|.-++.|++.++-+
T Consensus 18 ~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~-~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIH-KTWCGACKALKPKFAESKE-ISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEe-CCcCHHHHHHHHHHhhhHH-HHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 4567666666 6999999999998887533 33345566666433221 112444432 4888899998765544
No 83
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=95.30 E-value=0.0083 Score=44.86 Aligned_cols=52 Identities=31% Similarity=0.464 Sum_probs=47.7
Q ss_pred HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhccccc-cccccccc
Q 014901 54 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKD 106 (416)
Q Consensus 54 ~~~r~~l~~~~l~~y~~~~e~~~~~l~~l~~~~~~~l~~~~~m~~-~h~~~f~~ 106 (416)
=++..||+.-|+=+|++.+...|.+...|++++..+|. +.|.+. ||..+++.
T Consensus 5 ~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~ 57 (63)
T cd00166 5 EDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILK 57 (63)
T ss_pred HHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHH
Confidence 36788999999999999999999999999999999999 999998 99887653
No 84
>PRK09381 trxA thioredoxin; Provisional
Probab=95.30 E-value=0.021 Score=47.44 Aligned_cols=69 Identities=9% Similarity=0.055 Sum_probs=44.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHH
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 316 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lY 316 (416)
++++||.||. .|||.|+.....|.++..++.. ++.++.|..+......+.|.-..+|--++...+...+
T Consensus 21 ~~~vvv~f~~-~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 21 DGAILVDFWA-EWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred CCeEEEEEEC-CCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEE
Confidence 5666555554 5999999999999887777654 4777888776554433344334555545555444443
No 85
>PTZ00051 thioredoxin; Provisional
Probab=95.27 E-value=0.015 Score=47.06 Aligned_cols=69 Identities=9% Similarity=-0.019 Sum_probs=39.9
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeec
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD 310 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsD 310 (416)
+.++.+.++.++++|-..||+.|+.....|.++..++ .++.++.|-.+......+.|.-..+|.-++..
T Consensus 11 ~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 11 FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 3445555555555555789999999988887766544 24677777655433323444323444333333
No 86
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.22 E-value=0.018 Score=44.81 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=33.8
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
++++++.|+ ..|||+|+.....|.+...++.. ++.++.|-..
T Consensus 32 ~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 32 GKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred CceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 667888877 99999999999998888777765 6677777654
No 87
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=95.19 E-value=0.02 Score=46.41 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=29.3
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
+.++.++++.+++.|-..||+.|+.....+.+....+..
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~ 48 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE 48 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh
Confidence 455555555666667778999999999998887777764
No 88
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.18 E-value=0.072 Score=52.79 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=36.9
Q ss_pred ceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 014901 237 PMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 291 (416)
Q Consensus 237 ~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~ 291 (416)
.-.+.+| +++--+++||| ..||||..++--|+....+ .|+.+++||-+..
T Consensus 142 ~~~i~~l-a~~~gL~fFy~-~~C~~C~~~apil~~fa~~---ygi~v~~VS~DG~ 191 (256)
T TIGR02739 142 EKAIQQL-SQSYGLFFFYR-GKSPISQKMAPVIQAFAKE---YGISVIPISVDGT 191 (256)
T ss_pred HHHHHHH-HhceeEEEEEC-CCCchhHHHHHHHHHHHHH---hCCeEEEEecCCC
Confidence 3345665 34466888888 6799999998888776544 4999999997653
No 89
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.17 E-value=0.029 Score=45.08 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=44.8
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEecCChhhHHhhhcCCCCCceeeeccchHHH
Q 014901 241 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFF 316 (416)
Q Consensus 241 sdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG-V~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lY 316 (416)
.+.+.+++++++.|--.||+.|+.....|.+....++..+ +.++.|-.+......+.|.-.++|--++.+++...+
T Consensus 7 ~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 7 DDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred HHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcce
Confidence 3444455566666677799999998888877666665443 555555443332222333335566556666666543
No 90
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.10 E-value=0.037 Score=44.73 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=44.1
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHH
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
..||+.|-..||+.|+.....|.++...+.. .+.++.|-.+.-....+.|.-..+|--++.+.++.+
T Consensus 13 ~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 13 VPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 3445555569999999999999888877754 366667766554443444443566766666655443
No 91
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=95.10 E-value=0.011 Score=45.23 Aligned_cols=53 Identities=28% Similarity=0.485 Sum_probs=47.1
Q ss_pred HHHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhccccc-cccccccc
Q 014901 53 ALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKR-GHMARFKD 106 (416)
Q Consensus 53 ~~~~r~~l~~~~l~~y~~~~e~~~~~l~~l~~~~~~~l~~~~~m~~-~h~~~f~~ 106 (416)
.=++..||..-||=+|++.++..-.+...|+.++..||.. .|++. ||..|++.
T Consensus 5 ~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~~-lgi~~~ghr~ki~~ 58 (64)
T PF00536_consen 5 VEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLEE-LGITKLGHRKKILR 58 (64)
T ss_dssp HHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHHH-TT-SSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHHH-cCCCCHHHHHHHHH
Confidence 3468899999999999999988888999999999999999 99999 99988764
No 92
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.08 E-value=0.056 Score=44.76 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=40.6
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeeec
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYD 310 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG--V~LVaIspEs~~~~ik~F~~~~l~f~VLsD 310 (416)
++..++++|-..|||.|+.....|.++..+++..| +.+..|-.+......+.|.-..+|--++.+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc
Confidence 34467788889999999999999988887776554 444445544332222333323445444443
No 93
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.07 E-value=0.058 Score=44.37 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=42.4
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC--hhhHHhhhcCCCCCceeeeccch
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY--IESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs--~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+..+|++|-..||+.|+.....+.++..++.. .+.++.|..+. .....+.|.-..+|.-++.+++.
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCC
Confidence 34355555668999999998888877666653 46777777665 22223344335566666666665
No 94
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=95.01 E-value=0.062 Score=44.70 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=29.7
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhh
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA 278 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a 278 (416)
+.+..+.++.+|++|-..||+.|+.....+.+....++.
T Consensus 11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~ 49 (108)
T cd02996 11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKE 49 (108)
T ss_pred HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhh
Confidence 345556666777777799999999999998887766643
No 95
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.98 E-value=0.022 Score=45.92 Aligned_cols=65 Identities=12% Similarity=0.060 Sum_probs=40.1
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+++||.|+ ..||+.|+.....|.++..++ ...+.++.|-.+......+.|.-..+|--++.+.++
T Consensus 15 ~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 15 KLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 55555555 899999999988888776665 346677777544333223444334555445445444
No 96
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.85 E-value=0.039 Score=44.02 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=42.6
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHH
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
+++||.|| ..||+.|+.....|.++..++.. .+.++.|-.+......+.|.-..+|--++.+.+...
T Consensus 15 ~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 81 (101)
T TIGR01068 15 KPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEV 81 (101)
T ss_pred CcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEe
Confidence 46666665 68999999999999887766642 477777765544333444443455555555554433
No 97
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.84 E-value=0.056 Score=44.35 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=33.9
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 014901 242 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 291 (416)
Q Consensus 242 dL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~ 291 (416)
....++..++++|-..||+.|+.....+.++..+++. .+.++.|-.+.-
T Consensus 13 ~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~ 61 (101)
T cd03003 13 AAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD 61 (101)
T ss_pred HHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc
Confidence 3334444455555579999999999999888777754 366777776543
No 98
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.82 E-value=0.029 Score=49.03 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=35.4
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
+.+..+.+..++++|-+.|||+|+...--|.+...+ .++.++-|--+
T Consensus 16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd 62 (122)
T TIGR01295 16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE 62 (122)
T ss_pred HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence 555667777788888899999999999988877655 34566666543
No 99
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=94.53 E-value=0.08 Score=42.36 Aligned_cols=64 Identities=11% Similarity=0.182 Sum_probs=40.8
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhcc--ch-hhhcCCeEEEEecCChhhHHhhhcCCCCCceeeecc
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAKK--PI-FDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 311 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~--pe-L~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp 311 (416)
+++|++|.| -..||+.|+..-+.+.... .+ +. .+.-+|-|-.+..+... .+...++|.-++.||
T Consensus 16 ~~kpvlv~f-~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 16 EGKPVLVDF-GADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HTSEEEEEE-ETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHHHHH-HHHHCSSSEEEEEET
T ss_pred cCCCEEEEE-ECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCChhH-HhCCccCCEEEEeCC
Confidence 356666666 6899999999988875432 22 33 45666666655554322 332357887788876
No 100
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=94.13 E-value=0.17 Score=41.02 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=39.9
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
+++|.|+ ..||+.|+.....+.++..++.. .+.++.|-.+......+.|.-...|.-++.+.+
T Consensus 20 ~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 20 VWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred cEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCCccCEEEEECCC
Confidence 4666666 78999999998888777666543 366666665544332334433455555555555
No 101
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=94.02 E-value=0.15 Score=41.13 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=31.5
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhh-cCCeEEEEecCC
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDA-LGIQLFAVLHEY 290 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~a-lGV~LVaIspEs 290 (416)
..++++|-..||+.|+.....+.+....++. ..+.++.|-.+.
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA 62 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence 4456666679999999999999888777765 346666666544
No 102
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.53 Score=43.70 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--------cCChhhHHhhhcC--CCC
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--------HEYIESEVKDFWP--RYW 303 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs--------pEs~~~~ik~F~~--~~l 303 (416)
+|++++|.+ |++ .|||+.=--.-|.|-- +...|..++..+++.|-.++++- |++.+ +|+.|+. .+.
T Consensus 14 ~G~~~~l~~-~~G-kVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~e-EI~~fC~~~YgV 89 (162)
T COG0386 14 DGEPVSLSD-YKG-KVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDE-EIAKFCQLNYGV 89 (162)
T ss_pred CCCCccHHH-hCC-cEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHH-HHHHHHHhccCc
Confidence 599999999 565 5666666677888876 88999999999999999999884 34434 5999996 457
Q ss_pred Cceeeec
Q 014901 304 GGVVVYD 310 (416)
Q Consensus 304 ~f~VLsD 310 (416)
.||+++-
T Consensus 90 tFp~f~K 96 (162)
T COG0386 90 TFPMFSK 96 (162)
T ss_pred eeeeeeE
Confidence 8888763
No 103
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=93.76 E-value=0.19 Score=41.94 Aligned_cols=42 Identities=7% Similarity=-0.131 Sum_probs=32.1
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
++.||+.|-..||+.|+.....|.++..++ .++.++.|..+.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~ 56 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE 56 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC
Confidence 455666666889999999998888877776 457888887554
No 104
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=93.56 E-value=0.22 Score=40.66 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=33.7
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 241 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 241 sdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
.++.++ ++ |+.|-..||+.|+.....+.++...++..++.+..|-.+.
T Consensus 12 ~~~~~~-~~-lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~ 59 (101)
T cd02994 12 TLVLEG-EW-MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ 59 (101)
T ss_pred HHHhCC-CE-EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC
Confidence 344443 44 4666677999999999999887776655567777775544
No 105
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.53 E-value=0.18 Score=41.39 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=39.5
Q ss_pred EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 249 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 249 vVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
.+|+.|--.||+.|+.....+.++..++.. ++.++.|-.+......+.|.-..+|--++.+.+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKYESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCchHHHHHHcCCCcccEEEEEcCC
Confidence 445555568999999999999888777743 467777776654432333432444544444444
No 106
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=92.95 E-value=0.22 Score=49.14 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=35.7
Q ss_pred echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 239 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 239 sLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
.+.+|- ++--+++||| ..||||..++--|+....+. |..|++||-+.
T Consensus 137 ~i~~la-~~~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG 183 (248)
T PRK13703 137 AIAKLA-EHYGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG 183 (248)
T ss_pred HHHHHH-hcceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 356653 4467888888 67999999998888766544 99999999653
No 107
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=92.69 E-value=0.3 Score=42.32 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=42.1
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHH-hhhc-CCCCCceeeec
Q 014901 244 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEV-KDFW-PRYWGGVVVYD 310 (416)
Q Consensus 244 ~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~i-k~F~-~~~l~f~VLsD 310 (416)
..+.+.+|+.|-..||+.|+.....+.++..+++.. +.++.|-.+...... +.|. ..+..+-+|-|
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~ 93 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQGKCRKQKHFFYFPVIHLYYR 93 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChHHHHHhcCCcccCEEEEEEC
Confidence 345556666666999999999988888877777542 667777665444323 2443 23334555654
No 108
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.09 E-value=0.16 Score=44.71 Aligned_cols=42 Identities=10% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCCEEEEeecC------CCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 014901 246 ESPAVLLCIRR------PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 288 (416)
Q Consensus 246 ~~pvVLvFyRg------~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp 288 (416)
++|+||.|+-. .|||.|+...-.|.++..++. .++.++-|--
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdv 68 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDV 68 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEc
Confidence 46787877775 999999998888887766654 2466666653
No 109
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=92.08 E-value=0.27 Score=50.22 Aligned_cols=65 Identities=15% Similarity=0.125 Sum_probs=44.3
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCC
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWG 304 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG--V~LVaIspEs~~~~ik~F~~~~l~ 304 (416)
+.++.++++.++++|-..||+.|+.....+.++...+++.+ +.++.|-.+.-....+.|.-..+|
T Consensus 11 ~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 77 (462)
T TIGR01130 11 FDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYP 77 (462)
T ss_pred HHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcccc
Confidence 44555666666777777999999999999988888887776 777777665543323334324444
No 110
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.95 E-value=0.4 Score=43.82 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=46.1
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCC------CCceeeeccchHHHHHhC
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRY------WGGVVVYDQGMEFFKALG 320 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~------l~f~VLsDp~r~lYkALG 320 (416)
..+|+.|-..||+.|+.....|.++..++...+++++.|-.+......+.|.-.. +|--++...++.+.+--|
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEEEec
Confidence 3455555666999999999999988877766678888888655444334443222 444444444444443333
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=91.83 E-value=0.53 Score=40.22 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=36.7
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeecc
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 311 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp 311 (416)
..|++||--.|||+|+....-|.+...+. -.++++.|--+........|.-...|.-++.+.
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~ 84 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQD 84 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeC
Confidence 34666777889999998777776665443 235666665444333233343244555555544
No 112
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=91.81 E-value=0.4 Score=37.29 Aligned_cols=39 Identities=10% Similarity=0.143 Sum_probs=28.3
Q ss_pred EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 250 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 250 VLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
.|.+|-..|||+|......|.++..++.. .+.++-|--+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence 45566679999999999999887666642 2666666543
No 113
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=91.71 E-value=0.067 Score=41.03 Aligned_cols=52 Identities=31% Similarity=0.545 Sum_probs=46.4
Q ss_pred HHHhhhccchhhhhhhHHHHHcCCCh-HHHhccCcccchhhccc-cccccccccc
Q 014901 54 LEIRSYLHDRALMQYADIFEASGKSL-PELLNLSTGDLSSQFGM-KRGHMARFKD 106 (416)
Q Consensus 54 ~~~r~~l~~~~l~~y~~~~e~~~~~l-~~l~~~~~~~l~~~~~m-~~~h~~~f~~ 106 (416)
=++..||...||=+|++.++..|.+. ..|..++..+|- +.|+ ..||..+++.
T Consensus 7 ~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~ 60 (66)
T PF07647_consen 7 EDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLS 60 (66)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHH
Confidence 35778999999999999999999999 999999999996 9999 7888777654
No 114
>PTZ00102 disulphide isomerase; Provisional
Probab=91.47 E-value=0.36 Score=50.11 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=46.1
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC--CeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG--IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG--V~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+.++..+++.++++|-..||+.|+..+..+.++...++..+ +.++-|-...-....+.|.-.++|--++.+.+.
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 34455666667777778999999999998888777776654 555555554433323444334455444444443
No 115
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=91.33 E-value=2.3 Score=42.66 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=40.0
Q ss_pred ccCCCCceechhhccCCCEEEEeecCCCCc-chHHHHHHHHhccchhhhc-CCe--EEEEecC
Q 014901 231 VKTKTPPMKALELWRESPAVLLCIRRPGCI-MCRAEAHQLYAKKPIFDAL-GIQ--LFAVLHE 289 (416)
Q Consensus 231 v~~~G~~VsLsdL~~~~pvVLvFyRg~gCP-~Cn~el~~Ls~~~peL~al-GV~--LVaIspE 289 (416)
++.+|+.++-.++ .++.+++.| =-..|| .|=.|+..|.+...++++. |+. -|+|+.+
T Consensus 125 ~d~~Gk~~te~df-~Gkw~LiYF-GFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD 185 (280)
T KOG2792|consen 125 VDHDGKRVTEKDF-LGKWSLIYF-GFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD 185 (280)
T ss_pred EecCCCeeccccc-ccceEEEEe-cccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC
Confidence 4557999999996 445655544 333888 8999999999988888753 333 2566643
No 116
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=91.14 E-value=0.4 Score=42.29 Aligned_cols=75 Identities=19% Similarity=0.275 Sum_probs=38.7
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhh--------hcCCCCCceeeeccch
Q 014901 244 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKD--------FWPRYWGGVVVYDQGM 313 (416)
Q Consensus 244 ~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs--pEs~~~~ik~--------F~~~~l~f~VLsDp~r 313 (416)
-++++-|+++|-..||+.|+..-...-....-.+.+.-..|.|- .+......+. |...++|.-|+.|++.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G 91 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDL 91 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCC
Confidence 34444455557788999999877644222111222222444443 2221111111 2235788899999985
Q ss_pred H-HHHH
Q 014901 314 E-FFKA 318 (416)
Q Consensus 314 ~-lYkA 318 (416)
+ +|..
T Consensus 92 ~~~~~~ 97 (124)
T cd02955 92 KPFFGG 97 (124)
T ss_pred CEEeee
Confidence 4 4443
No 117
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=90.49 E-value=0.59 Score=45.36 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=39.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
+++++|.|| -.||+.|+.....+.++..+++. .+.+..|-.+......+.|.-..+|--++.+.+
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G 116 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATRALNLAKRFAIKGYPTLLLFDKG 116 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcccHHHHHHcCCCcCCEEEEEECC
Confidence 357766666 69999999998888877666653 244444443333322344433455655555544
No 118
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=90.05 E-value=0.35 Score=41.40 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=49.3
Q ss_pred hccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHHHHhCC
Q 014901 243 LWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG 321 (416)
Q Consensus 243 L~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lYkALGl 321 (416)
.......||+.|-..||+-|+.....|.++..++ .+++++-|-.+......+.|.-..+|--++...+..+.+--|+
T Consensus 18 ~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 18 IVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECc
Confidence 3444455666667899999998888887766554 3578877776665443445544566665666666655544444
No 119
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.69 E-value=0.96 Score=38.61 Aligned_cols=39 Identities=23% Similarity=0.120 Sum_probs=27.7
Q ss_pred EEEEeecCCCCcchHHHHHHHHhccchhhhc-C-CeEEEEe
Q 014901 249 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL-G-IQLFAVL 287 (416)
Q Consensus 249 vVLvFyRg~gCP~Cn~el~~Ls~~~peL~al-G-V~LVaIs 287 (416)
.||+.|-..||+.|+.....+.++..+++.. + +.+..|-
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 4555555899999999999998887777542 2 4454444
No 120
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=89.19 E-value=0.68 Score=39.13 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=40.2
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhc---cchhhhcCCeEEEEec--CChhh--HHhhhcCCCCCceeeeccc
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAK---KPIFDALGIQLFAVLH--EYIES--EVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~---~peL~alGV~LVaIsp--Es~~~--~ik~F~~~~l~f~VLsDp~ 312 (416)
++++.|++++...||++|+...+..-.. ...+++ ..|.+.. .+++. ....|....+|.-++.|+.
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~ 86 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR 86 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence 4567788899999999999988875432 233433 4444443 22221 1222323678888999983
No 121
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=89.04 E-value=0.22 Score=37.36 Aligned_cols=53 Identities=28% Similarity=0.406 Sum_probs=44.6
Q ss_pred HHHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhccc-ccccccccc
Q 014901 53 ALEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGM-KRGHMARFK 105 (416)
Q Consensus 53 ~~~~r~~l~~~~l~~y~~~~e~~~~~l~~l~~~~~~~l~~~~~m-~~~h~~~f~ 105 (416)
.-++..||..-|+-+|++.+...|.+..+|+.++..+.-.+.|+ ..||-.+.+
T Consensus 6 ~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll 59 (68)
T smart00454 6 PESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKIL 59 (68)
T ss_pred HHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHH
Confidence 34678899999999999999999999999999995555577999 568877654
No 122
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=88.69 E-value=1.5 Score=32.65 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=22.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 288 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp 288 (416)
|.+|-..|||+|+.....|.+ .|+....|-.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi 32 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDV 32 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEec
Confidence 578889999999987655543 5666666543
No 123
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=88.47 E-value=1.4 Score=33.33 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=22.0
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
|.+|-..|||+|......|.++... ..++.+.-|-
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id 37 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMID 37 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEE
Confidence 4556668999998877776665322 2245555553
No 124
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=88.26 E-value=0.54 Score=42.19 Aligned_cols=74 Identities=11% Similarity=0.158 Sum_probs=42.0
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhhhcCCCCCceeeeccchHHHHHh
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKDFWPRYWGGVVVYDQGMEFFKAL 319 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs--pEs~~~~ik~F~~~~l~f~VLsDp~r~lYkAL 319 (416)
++++.|++++-..|||+|+..-...-+...-.+.+.-..|+|. .+..+...... ..+.|.-+|.|++.++-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~-g~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPD-GQYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCcc-CcccCeEEEECCCCCCcccc
Confidence 3344455557779999999998887654332222222445543 23221111111 14677789999997665544
No 125
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=88.06 E-value=0.87 Score=44.81 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCC---eEEEEecCChhhHHhhhc-CCCCC--ceeee--ccchHHHHH
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGI---QLFAVLHEYIESEVKDFW-PRYWG--GVVVY--DQGMEFFKA 318 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV---~LVaIspEs~~~~ik~F~-~~~l~--f~VLs--Dp~r~lYkA 318 (416)
|.|+|+.+=..+|.+|..++..|..+..+|+..|. ..++|.+......+.... ++..+ ++||- +....++..
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~q~dvW~~ 105 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDENQPDVWEL 105 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCccccCHHHH
Confidence 45655556666999999999999999988888765 577777765543222111 24445 89996 466899999
Q ss_pred hCCCc
Q 014901 319 LGGGK 323 (416)
Q Consensus 319 LGl~r 323 (416)
|+..+
T Consensus 106 L~G~k 110 (238)
T PF04592_consen 106 LNGSK 110 (238)
T ss_pred hCCCc
Confidence 98865
No 126
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=87.52 E-value=2.3 Score=36.99 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=53.0
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec--------CChhhHHhhhcCC--
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH--------EYIESEVKDFWPR-- 301 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp--------Es~~~~ik~F~~~-- 301 (416)
+.+|++|+|++ ++++++ |+.==-.-|.+-. +..+|.++..++...|-.|+|+-+ ++.+ +++.|++.
T Consensus 8 ~~~G~~v~l~~-y~Gkv~-LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~-ei~~~~~~~~ 83 (108)
T PF00255_consen 8 DIDGKPVSLSK-YKGKVL-LIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNE-EIKEFCKEKF 83 (108)
T ss_dssp BTTSSEEEGGG-GTTSEE-EEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHH-HHHHHHCHCH
T ss_pred CCCCCEECHHH-cCCCEE-EEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHH-HHHHHHHhcc
Confidence 34699999998 466544 4444446788888 999999999999999999988842 2223 47888762
Q ss_pred CCCceeee
Q 014901 302 YWGGVVVY 309 (416)
Q Consensus 302 ~l~f~VLs 309 (416)
...|+|+.
T Consensus 84 ~~~F~vf~ 91 (108)
T PF00255_consen 84 GVTFPVFE 91 (108)
T ss_dssp T-SSEEBS
T ss_pred CCcccceE
Confidence 45677654
No 127
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=87.46 E-value=1.5 Score=38.31 Aligned_cols=33 Identities=21% Similarity=0.025 Sum_probs=26.2
Q ss_pred cCCCEEEEeecCC-CCcchHHHHHHHHhccchhh
Q 014901 245 RESPAVLLCIRRP-GCIMCRAEAHQLYAKKPIFD 277 (416)
Q Consensus 245 ~~~pvVLvFyRg~-gCP~Cn~el~~Ls~~~peL~ 277 (416)
+++++||.|++-+ |||-|+...-.|.++..++.
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~ 59 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP 59 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC
Confidence 4588888888887 89999998877777666554
No 128
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=87.37 E-value=0.99 Score=41.05 Aligned_cols=31 Identities=13% Similarity=-0.034 Sum_probs=23.4
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
.++++||-|++ .||+-|+....-|.++..++
T Consensus 22 ~~~lVVvdF~A-~WCgpCk~m~p~l~~la~~~ 52 (142)
T PLN00410 22 EERLVVIRFGH-DWDETCMQMDEVLASVAETI 52 (142)
T ss_pred CCCEEEEEEEC-CCChhHHHHHHHHHHHHHHc
Confidence 35666676666 99999999888777766655
No 129
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=87.32 E-value=5.6 Score=34.70 Aligned_cols=112 Identities=10% Similarity=0.069 Sum_probs=72.2
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHHHHhC
Q 014901 241 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALG 320 (416)
Q Consensus 241 sdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lYkALG 320 (416)
.++.-++++||+|-...--+.=..+...|.+....|.+..+.++.|....... .+ ..+=.+....+++.|+
T Consensus 4 ~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~-------~~--~~~~~~~~~~lr~~l~ 74 (118)
T PF13778_consen 4 DQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARS-------PG--KPLSPEDIQALRKRLR 74 (118)
T ss_pred hHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcccc-------cc--CcCCHHHHHHHHHHhC
Confidence 34433346778888888888999999999998999999999888887544321 11 0000011122333222
Q ss_pred CCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHHHHHHHhh
Q 014901 321 GGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEVIEICTQL 400 (416)
Q Consensus 321 l~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eVLaAlk~l 400 (416)
+. .++ -.+++||+|| ++... +...+++++|.+.+.++
T Consensus 75 ~~----------------------------------~~~---f~~vLiGKDG-~vK~r-----~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 75 IP----------------------------------PGG---FTVVLIGKDG-GVKLR-----WPEPIDPEELFDTIDAM 111 (118)
T ss_pred CC----------------------------------CCc---eEEEEEeCCC-cEEEe-----cCCCCCHHHHHHHHhCC
Confidence 21 011 2689999997 67766 55567999999998887
Q ss_pred hhhh
Q 014901 401 QDQQ 404 (416)
Q Consensus 401 ~~~~ 404 (416)
--.|
T Consensus 112 PmRq 115 (118)
T PF13778_consen 112 PMRQ 115 (118)
T ss_pred ccch
Confidence 4333
No 130
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=87.31 E-value=1.5 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=31.0
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI 291 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~ 291 (416)
++|+-|.+|-..|||+|..-..-+.++..+.. ++++..|--+..
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~ 54 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF 54 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC
Confidence 46998999999999999987777766554332 466666654433
No 131
>smart00594 UAS UAS domain.
Probab=87.30 E-value=1.1 Score=38.79 Aligned_cols=67 Identities=7% Similarity=0.032 Sum_probs=42.9
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhcc---chhhhcCCeEEEEe--cCChhh--HHhhhcCCCCCceeeeccch
Q 014901 244 WRESPAVLLCIRRPGCIMCRAEAHQLYAKK---PIFDALGIQLFAVL--HEYIES--EVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 244 ~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~---peL~alGV~LVaIs--pEs~~~--~ik~F~~~~l~f~VLsDp~r 313 (416)
-++++.+++++...||+.|+...++.-... ..++. ..|.+. -++.+. ....+....+|+-++.|+..
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCC
Confidence 355678888999999999999999875433 34433 445543 233321 12223236788888999885
No 132
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=87.12 E-value=2.1 Score=32.01 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.1
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
|+.|-..|||+|...-.-| ++.|++.-.+--+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~ 33 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDE 33 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEccccc
Confidence 4567779999999877776 55566666655433
No 133
>PLN02309 5'-adenylylsulfate reductase
Probab=86.88 E-value=1.1 Score=47.89 Aligned_cols=44 Identities=14% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
.+..+|++|--.||+.|+.....|.++..++...++.++.|-.+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 45667777888999999999988888887887778888888766
No 134
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=86.50 E-value=1.4 Score=47.21 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred chhhcc---CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 240 ALELWR---ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 240 LsdL~~---~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
+.++++ .+..||+.|--.||+.|+.....|.++..++...|+.++.|-.+.
T Consensus 361 f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~ 414 (463)
T TIGR00424 361 IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADG 414 (463)
T ss_pred HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCC
Confidence 445543 455677777889999999999999888888877678888786553
No 135
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=86.11 E-value=0.81 Score=38.39 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=22.8
Q ss_pred chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 014901 240 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK 272 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg----~gCP~Cn~el~~Ls~~ 272 (416)
+.++.+++++ ++|-.+ .|||||..--.-|.+.
T Consensus 5 v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 5 IKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred HHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc
Confidence 3566777775 455665 7999999877777653
No 136
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=85.50 E-value=0.78 Score=37.66 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=22.8
Q ss_pred hhhccCCCEEEEeecC----CCCcchHHHHHHHHhcc
Q 014901 241 LELWRESPAVLLCIRR----PGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 241 sdL~~~~pvVLvFyRg----~gCP~Cn~el~~Ls~~~ 273 (416)
.++.++.|+||+ --+ +|||||.....-|.+..
T Consensus 2 ~~~i~~~~vvvf-~k~~~~~~~Cp~C~~ak~~L~~~~ 37 (90)
T cd03028 2 KKLIKENPVVLF-MKGTPEEPRCGFSRKVVQILNQLG 37 (90)
T ss_pred hhhhccCCEEEE-EcCCCCCCCCcHHHHHHHHHHHcC
Confidence 456777886554 443 69999998777776654
No 137
>PTZ00102 disulphide isomerase; Provisional
Probab=85.22 E-value=1.4 Score=45.85 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcC-CeEEEEecCChhhHHhhhcCCCCCceeeeccchHH
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALG-IQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alG-V~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
..+..|+++|--.||+.|+.....|.++...++..+ +.++.|-.+.-+.....|.-.++|--++.+.+.+.
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcc
Confidence 333444445557999999999888887766665533 33443443322222234444566666777766543
No 138
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=84.96 E-value=3.1 Score=30.93 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=30.7
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC--CCCCceeeeccc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP--RYWGGVVVYDQG 312 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~--~~l~f~VLsDp~ 312 (416)
+.+|-..|||+|+.....|.+ .|+....|--+.-....+.|.+ ....+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 466778899999986555554 3555444443321111334443 235667666654
No 139
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=84.60 E-value=2.7 Score=35.50 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=28.9
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
+.||+.|-..||+.|+.....|.++..++. ++.++-|-.+.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~ 65 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK 65 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh
Confidence 455666667899999998888877766653 46666665443
No 140
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=84.53 E-value=2.7 Score=32.71 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=23.9
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
+.|-..|||+|+.....|.+.. +. -.+.++-|..+
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 4456799999999988888765 11 12566666654
No 141
>PRK10824 glutaredoxin-4; Provisional
Probab=84.39 E-value=1 Score=39.52 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=24.1
Q ss_pred chhhccCCCEEEEeecC----CCCcchHHHHHHHHhc
Q 014901 240 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAK 272 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg----~gCP~Cn~el~~Ls~~ 272 (416)
+.++.++.|+ ++|-.+ +|||||+.-.+-|.+.
T Consensus 8 v~~~I~~~~V-vvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 8 IQRQIAENPI-LLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HHHHHhcCCE-EEEECCCCCCCCCchHHHHHHHHHHc
Confidence 4667778775 556776 6999999888777665
No 142
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=84.13 E-value=9.1 Score=37.93 Aligned_cols=66 Identities=14% Similarity=0.007 Sum_probs=41.2
Q ss_pred cccccccccchhhhccccccccCCCCceechhhccCCCE-EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 211 IENISIQKLTPEYKIGMERLVKTKTPPMKALELWRESPA-VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 211 L~d~~l~~l~~~~~~g~~~~v~~~G~~VsLsdL~~~~pv-VLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
.|++.-++|. |+.+.+.++++++.. |.+|++.++=..|..+..-+.+.+..-....+++|-|..+
T Consensus 101 FP~l~g~tL~--------------g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~ 166 (252)
T PF05176_consen 101 FPNLQGKTLA--------------GNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLI 166 (252)
T ss_pred CCCCccccCC--------------CCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecc
Confidence 3577666554 788999999987764 5667776666666655553333222222127889888854
Q ss_pred C
Q 014901 290 Y 290 (416)
Q Consensus 290 s 290 (416)
.
T Consensus 167 e 167 (252)
T PF05176_consen 167 E 167 (252)
T ss_pred h
Confidence 3
No 143
>PHA02278 thioredoxin-like protein
Probab=83.97 E-value=3.3 Score=35.17 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=31.3
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
+.+...++..||+.|.-.||+.|+.....|.++..+.. ..++++-|--+
T Consensus 7 ~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd 55 (103)
T PHA02278 7 LNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLD 55 (103)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECC
Confidence 34444555566777778999999999988877654432 12455555433
No 144
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=83.89 E-value=2.3 Score=34.44 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=32.3
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
++|+++.| ...||+-|+.....|.++..+++.. +.++.|-.+.
T Consensus 12 ~~~~~~~f-~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~ 54 (103)
T cd02982 12 GKPLLVLF-YNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD 54 (103)
T ss_pred CCCEEEEE-EcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh
Confidence 56766666 4789999999999999998888732 5666665544
No 145
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=83.80 E-value=3.5 Score=31.96 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=21.5
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
|.+|-..|||+|+....-|.+ .|+....|-
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~d 32 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEIN 32 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEE
Confidence 456777999999988877775 455555543
No 146
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=83.68 E-value=2.4 Score=46.41 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=39.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHH---HhccchhhhcCCeEEEEecCCh----hhHHhhhcCCCCCceeeeccchHH
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQL---YAKKPIFDALGIQLFAVLHEYI----ESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~L---s~~~peL~alGV~LVaIspEs~----~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
++|++|.|+ ..||+.|+..-... .+...+++ ++.++-|--+.. ....+.|.-...|.-++.|++.+.
T Consensus 474 gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 474 GKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQE 547 (571)
T ss_pred CCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCC
Confidence 467777666 89999999865543 22233343 456655543221 112334444677877888876544
No 147
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=83.21 E-value=3.1 Score=36.64 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=28.3
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
+.+||+-|-+.|||-|+....-|.++..++... |.++-|--+
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD 55 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD 55 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence 445555556699999999988888877776432 455555444
No 148
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.22 E-value=10 Score=37.51 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=50.0
Q ss_pred CCCCCCCCCccccccccccccchhhhccccccccCCCCc-eechhhcc-CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 199 PPVNEKVAPYSAIENISIQKLTPEYKIGMERLVKTKTPP-MKALELWR-ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 199 a~~~~~~apl~~L~d~~l~~l~~~~~~g~~~~v~~~G~~-VsLsdL~~-~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
....|..|| |.++-+++ |+. ..+-|..+ ++|+||.| ...=||.=...+.+++++..++
T Consensus 72 ~a~~G~~AP-----ns~vv~l~--------------g~~~~~ildf~~g~RPLVlnF-GS~TCPpF~~~l~~f~~l~~~f 131 (237)
T PF00837_consen 72 EAKLGGPAP-----NSPVVTLD--------------GQRSCRILDFAKGNRPLVLNF-GSCTCPPFMAKLDAFKRLVEDF 131 (237)
T ss_pred ceeCCCCCC-----CCceEeeC--------------CCcceeHHHhccCCCCeEEEc-ccccchHHHHHHHHHHHHHHHh
Confidence 346788888 77666554 676 88888765 57888776 4556999999999999988888
Q ss_pred hhcCCeEEEEe
Q 014901 277 DALGIQLFAVL 287 (416)
Q Consensus 277 ~alGV~LVaIs 287 (416)
.+ =|..+.|.
T Consensus 132 ~d-~adFl~VY 141 (237)
T PF00837_consen 132 SD-VADFLIVY 141 (237)
T ss_pred hh-hhheehhh
Confidence 66 25566665
No 149
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=81.82 E-value=4 Score=32.68 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=26.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 288 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp 288 (416)
|..|-..|||+|..-...|.++..+. .|+...-|-.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi 38 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDI 38 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEEC
Confidence 45667789999999999999877544 3666655543
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=81.53 E-value=4.2 Score=38.44 Aligned_cols=61 Identities=10% Similarity=-0.000 Sum_probs=33.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceee
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVV 308 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VL 308 (416)
++|++|..|--.|||+|......+.++..+ .-.+.++-|-.+......+.|.-...|.-++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCCHHHHHHhCCccCCEEEE
Confidence 578888878889999999766544443322 1134444444443332233332234444444
No 151
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=80.54 E-value=3.6 Score=38.86 Aligned_cols=67 Identities=10% Similarity=0.232 Sum_probs=35.7
Q ss_pred cCCCEEEEeec--CCCCcchHHHHHHHHhccchhhhcCCeEEEEecC--ChhhHHhhhcCCCCCceeeeccch
Q 014901 245 RESPAVLLCIR--RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE--YIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 245 ~~~pvVLvFyR--g~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE--s~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+.+..|++|+= ..|||.|+....-|.++..++. ++++..|..+ ......+.|.=...|--++.+.+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe
Confidence 33344444444 2899999998887777666553 3455555543 222223444323444444444333
No 152
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=78.39 E-value=6 Score=30.72 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=31.0
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 312 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~ 312 (416)
|.+|-..+||+|+..-+.|.+ .|+..-.|--+........+.. .....|++...+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEECC
Confidence 457888999999998888865 4555544432221111233322 334566555433
No 153
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.28 E-value=2.9 Score=37.02 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=43.9
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVa--IspEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-..+||+|+...+-|.+. |+.... |..+.+. .++..+.. .+.++.-+..+....|+.+|+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------DIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVD 70 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCC
Confidence 6789999999999977766554 444333 3322221 13555554 3345677888999999999986
No 154
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=78.11 E-value=9.2 Score=36.03 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=54.4
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe-----cCChh--hHHhhhcC--CC
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL-----HEYIE--SEVKDFWP--RY 302 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs-----pEs~~--~~ik~F~~--~~ 302 (416)
+.+|+.|+|+.+ + +.|||+.==-.-|.+=..+-.+|..++..++..|-.++|.- .+.|+ .++..|.. ..
T Consensus 21 d~~G~~v~l~~y-r-GkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~ 98 (171)
T KOG1651|consen 21 DLDGEYVSLSQY-R-GKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYG 98 (171)
T ss_pred cCCCCCccHHHh-C-CeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccC
Confidence 335999999996 4 45666666667899988888899999999999999999984 23221 24667764 33
Q ss_pred CCceeee
Q 014901 303 WGGVVVY 309 (416)
Q Consensus 303 l~f~VLs 309 (416)
..|+||.
T Consensus 99 ~~f~if~ 105 (171)
T KOG1651|consen 99 AEFPIFQ 105 (171)
T ss_pred CCCccEe
Confidence 4555553
No 155
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=77.87 E-value=2.9 Score=36.68 Aligned_cols=74 Identities=12% Similarity=0.009 Sum_probs=38.4
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHHHHhCC
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFKALGG 321 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lYkALGl 321 (416)
...||+.|--.||+-|+....-|.++..++... +.++-|--+........|.=...|--++.-.++.+.+..|.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~ 87 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGT 87 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCC
Confidence 345566667789999998877776666555321 34444444433322233322333333333334444444444
No 156
>PHA03050 glutaredoxin; Provisional
Probab=77.60 E-value=2.3 Score=36.64 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=21.2
Q ss_pred hhhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 014901 241 LELWRESPAVLLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 241 sdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
.++..+.++ +.|-..|||||+.--.-|.+.
T Consensus 7 ~~~i~~~~V--~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 7 QQRLANNKV--TIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred HHHhccCCE--EEEECCCChHHHHHHHHHHHc
Confidence 556666663 456788999998877666554
No 157
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=77.13 E-value=2.3 Score=36.40 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=42.8
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-..+||+|+...+-|.+.-=.+ ..+=|..+.+. .++..+.. .+.+..-+.......|+.+|+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~-----~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDY-----TAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLK 69 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCce-----EEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcc
Confidence 45788999999999887777642222 23333333221 13555553 4556666667888899999985
No 158
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=76.37 E-value=2.3 Score=35.74 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=19.4
Q ss_pred hhccCCCEEEEeecCCCCcchHHHHHHHHhc
Q 014901 242 ELWRESPAVLLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 242 dL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
+++++.|++| |=..|||||+..-+-|.+.
T Consensus 3 ~~i~~~~Vvv--ysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 3 RMVSEKAVVI--FSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred hhhccCCEEE--EECCCCHHHHHHHHHHHHc
Confidence 4556667543 3349999999777766554
No 159
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=76.34 E-value=2.9 Score=36.96 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=28.3
Q ss_pred CCCEEEEee------cCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 246 ESPAVLLCI------RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 246 ~~pvVLvFy------Rg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
++++.|+|+ -..|||.|+.----+.+...... .++.+|-|.-+
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG 67 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVG 67 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE--
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcC
Confidence 367778887 45699999998888877655532 26777666533
No 160
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=75.82 E-value=9.5 Score=29.18 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.2
Q ss_pred EEeecCCCCcchHHHHHHHHh
Q 014901 251 LLCIRRPGCIMCRAEAHQLYA 271 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~ 271 (416)
|.+|-..|||+|......|.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456778999999998888876
No 161
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=75.74 E-value=3.6 Score=34.45 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=43.0
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCCh-hhHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYI-ESEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~-~~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-..+||+|+....-|.+.-=. +..+=|..+.+ ...+..+.. .+.+..-+..+....|+.+|+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~-----~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE-----YEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC-----cEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 4688999999999987777664222 23444443222 123555543 3445666778888999999885
No 162
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=73.77 E-value=3.4 Score=35.32 Aligned_cols=28 Identities=14% Similarity=0.176 Sum_probs=21.9
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhcc
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
+.|+.|+.|=-++||+|+..-..+.+..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~ 31 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLL 31 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHH
Confidence 4567777777999999999887776644
No 163
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=73.59 E-value=8 Score=35.87 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=35.0
Q ss_pred EEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCce-eeec
Q 014901 249 AVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGV-VVYD 310 (416)
Q Consensus 249 vVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~-VLsD 310 (416)
.||++|-..||+-|+.....|.++..++. +++++=|-.+.. .....|.-..+|-- +|-|
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~ 144 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-GASDEFDTDALPALLVYKG 144 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-hhHHhCCCCCCCEEEEEEC
Confidence 44555556799999987777766655542 477777766543 22344543445433 4444
No 164
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=73.34 E-value=11 Score=29.87 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=25.8
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE 292 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~ 292 (416)
|.|| ..|||.|+.....+.+...+. |..+-.+--+.++
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~ 40 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMN 40 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHH
Confidence 5565 499999999988888776654 4444444444444
No 165
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=73.27 E-value=3.2 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.518 Sum_probs=21.6
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
|.+|-+.|||+|+.--..|.+ .|+....|-
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~id 39 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLKE-------KGYDFEEIP 39 (79)
T ss_pred EEEEECCCCHhHHHHHHHHHH-------cCCCcEEEE
Confidence 456778999999998887753 466655544
No 166
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=72.90 E-value=3.4 Score=33.57 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.9
Q ss_pred EEeecCCCCcchHHHHHHHHhcc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
|+.|=..|||||....+-|.++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~ 24 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLA 24 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhC
Confidence 56677889999999888887765
No 167
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=72.86 E-value=3.3 Score=32.19 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=23.1
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
|++|-..|||+|......|.+..-. .+.+=|...
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCC
Confidence 3556679999999988888776442 344555543
No 168
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=72.68 E-value=4.5 Score=34.75 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=42.3
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE--ecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV--LHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaI--spEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-..+||+|+...+-|.+. |+....| ..+.+. ..+..+.. .+....-+.......|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEAN-------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 3578899999999988877763 4444333 322221 12444443 3445667888999999999974
No 169
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=72.66 E-value=5.2 Score=34.35 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=44.7
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVa--IspEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
+.+|-..+|++|+....-|.+. |+.... |..+.+. .+++.+.. .+.+..-+.......|+.+|+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~ 70 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNID 70 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCC
Confidence 5789999999999977777664 444333 3323221 23666654 3446777889999999999986
No 170
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=72.58 E-value=12 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.385 Sum_probs=17.3
Q ss_pred EEeecCCCCcchHHHHHHHHhcc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
|..|=..|||+|+.....|.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~ 24 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC
Confidence 34556789999999887777654
No 171
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=72.38 E-value=1.8 Score=44.79 Aligned_cols=84 Identities=18% Similarity=0.329 Sum_probs=55.7
Q ss_pred chhhhhhccccccchhhHhhcCCCCCccccccChhhhHHhhhhHHhhhHHHHhhhccchhhhhhhHHHHHcCCChHHHhc
Q 014901 5 AMEDFVGNGVLKGQLPKLLEEGWDDVPTLKVMNAEDMDAINMTQQQKDALEIRSYLHDRALMQYADIFEASGKSLPELLN 84 (416)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~l~~y~~~~e~~~~~l~~l~~ 84 (416)
+++||+----|..-+..|+++|||++-++|-+..+|++.|+.-. ==|-+-||.-+..|..-+..-..--.
T Consensus 217 ~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~n----------P~Hr~kLL~av~~~~e~d~~~~~~~~ 286 (361)
T KOG4384|consen 217 SLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEELGIDN----------PDHRKKLLSAVELLKEIDSGSEQVGE 286 (361)
T ss_pred HHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCC----------HHHHHHHHHHHHHHHhccccccccCC
Confidence 57777777778888999999999999999999999999886533 33555555555544433333322223
Q ss_pred cCcccchhhccccc
Q 014901 85 LSTGDLSSQFGMKR 98 (416)
Q Consensus 85 ~~~~~l~~~~~m~~ 98 (416)
-.+-+|+..-..++
T Consensus 287 ~e~~~l~a~isv~~ 300 (361)
T KOG4384|consen 287 NEPNVLSADISVLP 300 (361)
T ss_pred Cccccchhhhcccc
Confidence 33444555555555
No 172
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=72.01 E-value=7.2 Score=33.92 Aligned_cols=45 Identities=11% Similarity=0.092 Sum_probs=32.2
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchh-hhcCCeEEEE
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF-DALGIQLFAV 286 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL-~alGV~LVaI 286 (416)
+++ .+.|++|..|=-+.||+|+..-..+.++..++ +.-.+.++.+
T Consensus 7 ~G~--~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~ 52 (162)
T PF13462_consen 7 IGN--PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFR 52 (162)
T ss_dssp ES---TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEE
T ss_pred ecC--CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEE
Confidence 444 56688999999999999999999998777765 3334555444
No 173
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=71.96 E-value=5.1 Score=34.66 Aligned_cols=39 Identities=23% Similarity=0.493 Sum_probs=25.4
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
..++..+.|| |+|-+ .|||||.. +..|-.. .|+...+|-
T Consensus 7 v~~~i~~~~V-VifSK-s~C~~c~~-~k~ll~~------~~v~~~vvE 45 (104)
T KOG1752|consen 7 VRKMISENPV-VIFSK-SSCPYCHR-AKELLSD------LGVNPKVVE 45 (104)
T ss_pred HHHHhhcCCE-EEEEC-CcCchHHH-HHHHHHh------CCCCCEEEE
Confidence 4566777785 55666 99999998 6655433 455554443
No 174
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=71.02 E-value=9.8 Score=29.69 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=17.3
Q ss_pred EEeecCCCCcchHHHHHHHHhc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
|.+|-..|||+|...-.-|.+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc
Confidence 3567789999999888877753
No 175
>PRK12559 transcriptional regulator Spx; Provisional
Probab=71.00 E-value=7 Score=34.75 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCe--EEEEecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQ--LFAVLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~--LVaIspEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-..+|+.|+...+-|.+. |+. .+=|..+.+. .+++.+.. .+.+..-+.......|+.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~ 70 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-------QIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNIN 70 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------CCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCC
Confidence 6789999999999987766654 444 3334433332 23666654 3456666778889999999986
No 176
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=69.98 E-value=7.4 Score=36.04 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=20.8
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHh
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYA 271 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~ 271 (416)
++..|++|=-+.||||+..-..+.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 5666777778999999999988876
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=69.49 E-value=4.5 Score=31.19 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=16.6
Q ss_pred EEeecCCCCcchHHHHHHHHh
Q 014901 251 LLCIRRPGCIMCRAEAHQLYA 271 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~ 271 (416)
|..|-..|||+|...-..|.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 456777999999998777764
No 178
>PRK10638 glutaredoxin 3; Provisional
Probab=68.57 E-value=4.8 Score=32.16 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=17.8
Q ss_pred EEeecCCCCcchHHHHHHHHhc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
|.+|-..|||||+.-...|.+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5577899999999888877753
No 179
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=67.85 E-value=8.9 Score=39.18 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=43.0
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al--GV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
.+..||++|--.||+.|......+.++...+... ++.++.|-.+.-+ +..+.-..+|--++.+.+.
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~--~~~~~i~~~Pt~~~~~~~~ 430 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND--VPPFEVEGFPTIKFVPAGK 430 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc--cCCCCccccCEEEEEeCCC
Confidence 4566778888999999999999998888777753 5667667654322 2223324445444544443
No 180
>PRK10329 glutaredoxin-like protein; Provisional
Probab=67.45 E-value=19 Score=29.13 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=30.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCCceeeeccc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWGGVVVYDQG 312 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~f~VLsDp~ 312 (416)
|..|=..|||+|...-..| ++.|+..-.|--+........... ..-..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 4567779999999866666 446777655543322211222222 233556555444
No 181
>PTZ00062 glutaredoxin; Provisional
Probab=65.56 E-value=4.9 Score=38.57 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=25.0
Q ss_pred chhhccCCCEEEEeecC----CCCcchHHHHHHHHhcc
Q 014901 240 ALELWRESPAVLLCIRR----PGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg----~gCP~Cn~el~~Ls~~~ 273 (416)
+.+|....|+ ++|-.+ ++||||+....-|.+..
T Consensus 106 v~~li~~~~V-vvf~Kg~~~~p~C~~C~~~k~~L~~~~ 142 (204)
T PTZ00062 106 IERLIRNHKI-LLFMKGSKTFPFCRFSNAVVNMLNSSG 142 (204)
T ss_pred HHHHHhcCCE-EEEEccCCCCCCChhHHHHHHHHHHcC
Confidence 5677788885 556676 69999999887777643
No 182
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=62.27 E-value=6.7 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=16.6
Q ss_pred EEeecCCCCcchHHHHHHHHhc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
|..|-..|||||...-+.|.+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~ 24 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK 24 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc
Confidence 4556778899999887777743
No 183
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=61.62 E-value=6.5 Score=29.87 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=14.3
Q ss_pred EeecCCCCcchHHHHHHHHh
Q 014901 252 LCIRRPGCIMCRAEAHQLYA 271 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~ 271 (416)
.+|=..|||+|+.....|.+
T Consensus 3 ~ly~~~~C~~C~~~~~~L~~ 22 (77)
T TIGR02200 3 TVYGTTWCGYCAQLMRTLDK 22 (77)
T ss_pred EEEECCCChhHHHHHHHHHH
Confidence 45556999999986665543
No 184
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=59.94 E-value=14 Score=35.83 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=28.3
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 286 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaI 286 (416)
+++..|+.|=.+-||||+..-.++.++ .+.|+++..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 456778888899999999988777654 3467887665
No 185
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=59.40 E-value=13 Score=35.04 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=26.4
Q ss_pred CEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 014901 248 PAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 288 (416)
Q Consensus 248 pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp 288 (416)
+|||.| -..||+-|+.....|.++..++. .+++|-|--
T Consensus 104 ~VVV~F-ya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~a 141 (192)
T cd02988 104 WVVVHL-YKDGIPLCRLLNQHLSELARKFP--DTKFVKIIS 141 (192)
T ss_pred EEEEEE-ECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEh
Confidence 455554 56799999998888877766653 466665553
No 186
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=59.34 E-value=14 Score=32.87 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=43.0
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEE--ecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV--LHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaI--spEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-..+|+.|+....-|.+. |+....| ..+.+. .++..+.. .+.+++-+.....+.|+.+|+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-------~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~ 70 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-------QLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCD 70 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcc
Confidence 5688999999999976666554 4443333 323321 23666654 3455666677899999999985
No 187
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=59.21 E-value=23 Score=31.15 Aligned_cols=67 Identities=10% Similarity=-0.027 Sum_probs=38.1
Q ss_pred ccCCCEEEEeecCCCCcc--hHH--HHHHHHhc-cchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeec
Q 014901 244 WRESPAVLLCIRRPGCIM--CRA--EAHQLYAK-KPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD 310 (416)
Q Consensus 244 ~~~~pvVLvFyRg~gCP~--Cn~--el~~Ls~~-~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsD 310 (416)
.+...+||+||--.||+- |+. ....|.+. ...+++.++.++-|=.+.-....+.|.-.++|--++..
T Consensus 24 ~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk 95 (120)
T cd03065 24 KKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFK 95 (120)
T ss_pred HhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEEE
Confidence 344557888888899976 993 33333333 33455667777777655443334445434555443333
No 188
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=53.31 E-value=22 Score=34.80 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=22.1
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhc
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
+.+.+|+.|=.+-||||+..-.++.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 456778888899999999988887664
No 189
>PRK06184 hypothetical protein; Provisional
Probab=53.17 E-value=1.4e+02 Score=31.73 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCceechhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 234 KTPPMKALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 234 ~G~~VsLsdL~~~-~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
+|+++++-+++.. +.++|.|--..| +.....|+.++.|++.. ....|.|++
T Consensus 401 ~~~~~~l~d~~~~~~~~ll~~~~~~~---------------~~~~~~~~~~~~~~~~~-------------~~~~~~d~~ 452 (502)
T PRK06184 401 AGQPTRLFDLFRGPHWTLLAFGAGAA---------------AILARRGLRIHRVGDAA-------------EGGDLVDDA 452 (502)
T ss_pred CCceeeHHHhhCCCcEEEEEecCCch---------------hhhhhcCceEEEecccC-------------CCCceeCCC
Confidence 4778888898874 556665422111 11235577877776432 123578888
Q ss_pred hHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHH
Q 014901 313 MEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAE 392 (416)
Q Consensus 313 r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~e 392 (416)
..+++.||+.. +|.++|.||| -|.|... ..+.+.
T Consensus 453 g~~~~~~~~~~---------------------------------------~~~~lvRPDg-~v~~~~~------~~~~~~ 486 (502)
T PRK06184 453 GHFRDAYGLTG---------------------------------------GTLVLVRPDG-YVGLIAA------GDDAAA 486 (502)
T ss_pred ccHHHHhcCCC---------------------------------------CcEEEECCCc-ceEEEec------CCCHHH
Confidence 88887766531 2689999996 7877531 136677
Q ss_pred HHHHHHhh
Q 014901 393 VIEICTQL 400 (416)
Q Consensus 393 VLaAlk~l 400 (416)
+++.+..+
T Consensus 487 ~~~~l~~~ 494 (502)
T PRK06184 487 LEAYLARV 494 (502)
T ss_pred HHHHHHHh
Confidence 77777654
No 190
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=53.10 E-value=8.8 Score=29.17 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=35.5
Q ss_pred hhhhhhccccccchhhHhhcCCCCCccccccChhhhHHhhhhHH
Q 014901 6 MEDFVGNGVLKGQLPKLLEEGWDDVPTLKVMNAEDMDAINMTQQ 49 (416)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~~~~ 49 (416)
+.+|+-.-=|....+.|.+.|++.+-.|.-|+.+|+..+.++..
T Consensus 9 v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~ 52 (66)
T PF07647_consen 9 VAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLKELGITNL 52 (66)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHH
T ss_pred HHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCH
Confidence 44555544558889999999999988999999999988877654
No 191
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=52.55 E-value=20 Score=31.83 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC---CCCCceeeeccc
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP---RYWGGVVVYDQG 312 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~---~~l~f~VLsDp~ 312 (416)
++.-+..+=+.|||-|...+-.|.++...-. ++++=.|..+.-......|.. ...|--|+.|.+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 4556667789999999999999988765432 566666665443333445543 235556888877
No 192
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=50.91 E-value=31 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=27.6
Q ss_pred CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCC
Q 014901 247 SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEY 290 (416)
Q Consensus 247 ~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs 290 (416)
+..||+.|...||+-|+.-.--+.++..+... +..+-|--+.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE 62 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence 35566666899999999877655555444433 5666666543
No 193
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=50.81 E-value=18 Score=31.99 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=24.7
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchh
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIF 276 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL 276 (416)
+.++.|+.|=-+.||+|...-..+.+...+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC
Confidence 5677788888899999999998887665544
No 194
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=48.51 E-value=34 Score=26.10 Aligned_cols=54 Identities=13% Similarity=-0.063 Sum_probs=30.5
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeecc
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 311 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp 311 (416)
.+|-..|||+|+.-...|.+.--.+ +++-|..........+..+ .-..|++.|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~-----e~~~v~~~~~~~~~~~~np-~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITV-----ELREVELKNKPAEMLAASP-KGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCc-----EEEEeCCCCCCHHHHHHCC-CCCCCEEEEC
Confidence 4567789999998887777654333 4555554322111222212 2356777765
No 195
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=48.42 E-value=17 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA 285 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVa 285 (416)
|.+|-.+.||+|...-..|.+.. +....+++++-
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~-~~~~~~~~~~~ 34 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLL-YADDGGVRVVY 34 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHH-hhcCCcEEEEE
Confidence 35667889999999999998875 22233445443
No 196
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=47.26 E-value=39 Score=26.39 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=31.4
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeeecc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQ 311 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~-~l~f~VLsDp 311 (416)
+.+|-..+||+|+.-...|.+.-=. .+++-|.+.... ..+|.+ + .-..|++.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~-----y~~~~v~~~~~~--~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD-----VILYPCPKGSPK--RDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc-----EEEEECCCChHH--HHHHHHhCCCCcccEEEeC
Confidence 4577888999999887777664322 244555433211 234443 2 2356788775
No 197
>PTZ00062 glutaredoxin; Provisional
Probab=46.80 E-value=25 Score=33.77 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=31.9
Q ss_pred chhhccC-CCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecC
Q 014901 240 ALELWRE-SPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHE 289 (416)
Q Consensus 240 LsdL~~~-~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspE 289 (416)
+.++.+. ...+|+||.-.|||-|+..-.-|.++..++. .++.+-|-.+
T Consensus 9 ~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 9 KDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred HHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 3444452 2567888899999999977776666655552 3666666544
No 198
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=46.18 E-value=12 Score=29.57 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 256 RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 256 g~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
+.+||+|...++.+.+...++ |+++=.+-
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~ 35 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIID 35 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEE
Confidence 678999997777777665555 55553333
No 199
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=33 Score=32.53 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=30.4
Q ss_pred cCCCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhcc
Q 014901 232 KTKTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
..+|..+..++... ++.++.|.-+-||+|+.....+.+.+
T Consensus 71 ~~~~~~~~~G~~~~--~v~v~~f~d~~Cp~C~~~~~~l~~~~ 110 (244)
T COG1651 71 TPDGKDVVLGNPYA--PVTVVEFFDYTCPYCKEAFPELKKKY 110 (244)
T ss_pred cCCCCcccccCCCC--CceEEEEecCcCccHHHHHHHHHHHh
Confidence 33466666666544 88899999999999988888887744
No 200
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=45.61 E-value=81 Score=25.19 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=33.2
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQG 312 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~ 312 (416)
|+||-+.+|++|...-..|.++..+. ++.+..|=-..-+..... .++.-||+.-.+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d~~l~~~---Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDEDPELFEK---YGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTTHHHHHH---SCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCCHHHHHH---hcCCCCEEEEcC
Confidence 67899999999999888888765443 355555544332221222 334556554444
No 201
>PHA02125 thioredoxin-like protein
Probab=45.54 E-value=46 Score=25.98 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=16.3
Q ss_pred EEeecCCCCcchHHHHHHHHh
Q 014901 251 LLCIRRPGCIMCRAEAHQLYA 271 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~ 271 (416)
|+.|-..||+.|+.....|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 566778999999987776643
No 202
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=44.41 E-value=2.4e+02 Score=30.28 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=63.3
Q ss_pred CCCceechhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 234 KTPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 234 ~G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
+|..+++-+|+..+-+||.|--..+ +. +..+. -.....+++++.|++..... .+...+.|++.
T Consensus 441 ~~~~~~l~dl~g~~f~ll~~~~~~~----~~---~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~~ 503 (547)
T PRK08132 441 DGEPGWLLDLLGGGFTLLLFGDDAA----AA---ALLQA-LAAAALPVRVVAVVPAGAAQ---------AAAGVLEDADG 503 (547)
T ss_pred CCCceEHHHhcCCCEEEEEecCCch----hh---hhhhh-hhccCCceEEEEEecCcccc---------cCcccccCccc
Confidence 4778899999976667776643211 11 11111 12234456677776543110 12246789998
Q ss_pred HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHH
Q 014901 314 EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEV 393 (416)
Q Consensus 314 ~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eV 393 (416)
.+++.||... ++.+||.||| -|.|.... .+++.+
T Consensus 504 ~~~~~~~~~~---------------------------------------~~~~LvRPDg-~va~~~~~------~~~~~~ 537 (547)
T PRK08132 504 LAAERYDARP---------------------------------------GTVYLIRPDQ-HVAARWRT------PDAAAV 537 (547)
T ss_pred HHHHHhCCCC---------------------------------------CeEEEECCCc-eEEEEecC------CCHHHH
Confidence 8888776631 2689999996 78877533 367888
Q ss_pred HHHHHhh
Q 014901 394 IEICTQL 400 (416)
Q Consensus 394 LaAlk~l 400 (416)
++.|+..
T Consensus 538 ~~~l~~~ 544 (547)
T PRK08132 538 RAALARA 544 (547)
T ss_pred HHHHHHH
Confidence 8887764
No 203
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=43.76 E-value=13 Score=27.35 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=32.9
Q ss_pred hhhhhhccccccchhhHhhcCCCCCccccccChhhhHHhhhhH
Q 014901 6 MEDFVGNGVLKGQLPKLLEEGWDDVPTLKVMNAEDMDAINMTQ 48 (416)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~~~ 48 (416)
+.+|+..--+....+.|.++|+ |...|.-|+.+|+..|+.+.
T Consensus 7 V~~wL~~~~~~~y~~~f~~~~i-~g~~L~~l~~~dL~~lgi~~ 48 (63)
T cd00166 7 VAEWLESLGLGQYADNFRENGI-DGDLLLLLTEEDLKELGITL 48 (63)
T ss_pred HHHHHHHcChHHHHHHHHHcCC-CHHHHhHCCHHHHHHcCCCC
Confidence 4455544445777889999999 99999999999998887765
No 204
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.82 E-value=30 Score=31.18 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=18.4
Q ss_pred CCCcchHHHHHHHHhccchhhhcCCeEEEEec
Q 014901 257 PGCIMCRAEAHQLYAKKPIFDALGIQLFAVLH 288 (416)
Q Consensus 257 ~gCP~Cn~el~~Ls~~~peL~alGV~LVaIsp 288 (416)
.|||.|....--+.+....+ -.++.+|.|--
T Consensus 43 SWCPdCV~AEPvi~~alk~a-p~~~~~v~v~V 73 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHA-PEDVHFVHVYV 73 (128)
T ss_pred cCCchHHHhhHHHHHHHHhC-CCceEEEEEEe
Confidence 49999998766665544322 22455555543
No 205
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=42.44 E-value=19 Score=30.74 Aligned_cols=66 Identities=8% Similarity=0.131 Sum_probs=41.7
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcCCCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWPRYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~-~~ik~F~~~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.+|-.++|+.|+....-|.+.-=.+ +++=|.-+.+. .+++.+.. .+...-+.......|+.+|+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~-----~~~di~~~p~s~~eL~~~l~-~~g~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAY-----TFHDYRKDGLDAATLERWLA-KVGWETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCe-----EEEecccCCCCHHHHHHHHH-HhChHHHHccCchHHHhCChh
Confidence 46899999999999887776652222 33334333331 23565554 223456667888999999885
No 206
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=41.30 E-value=34 Score=24.30 Aligned_cols=58 Identities=19% Similarity=0.023 Sum_probs=30.8
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC--CCCCceeeeccchHHH
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP--RYWGGVVVYDQGMEFF 316 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~--~~l~f~VLsDp~r~lY 316 (416)
.+|-..+||+|+.-...|....-. .+.+-|....... ..+.+ ..-..|++.+.+..++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~-----~~~~~~~~~~~~~--~~~~~~~~~~~~P~l~~~~~~~~ 61 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLP-----YELVPVDLGEGEQ--EEFLALNPLGKVPVLEDGGLVLT 61 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC-----cEEEEeCCCCCCC--HHHHhcCCCCCCCEEEECCEEEE
Confidence 356667899999766666654322 3455555433221 11222 2335567777654443
No 207
>PF14968 CCDC84: Coiled coil protein 84
Probab=39.64 E-value=7.9 Score=40.07 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.3
Q ss_pred eecCCCCcchHHHHHHHHh
Q 014901 253 CIRRPGCIMCRAEAHQLYA 271 (416)
Q Consensus 253 FyRg~gCP~Cn~el~~Ls~ 271 (416)
-=++|||+||..++.+...
T Consensus 55 ~~~~fWC~fC~~ev~~~~s 73 (336)
T PF14968_consen 55 HRNRFWCVFCDCEVREHDS 73 (336)
T ss_pred ccceeEeeCccchhhhccc
Confidence 3467899999999998744
No 208
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=39.56 E-value=29 Score=26.30 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=32.5
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeeeccchHHHH
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEFFK 317 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~-~l~f~VLsDp~r~lYk 317 (416)
.+|-..+||+|+.-...|.+.--.+ +++-|.....+....+|.+ + .-..|++.|.+..+++
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~-----e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~e 64 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLEL-----NLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWE 64 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCC-----EEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEc
Confidence 4677889999997666665543222 4455543221111133332 2 2256788776554443
No 209
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=38.61 E-value=1.8e+02 Score=26.74 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=26.2
Q ss_pred CCCceechhhcc-CCC-EEEEeecCCCCcchHHHHHHHHhcc
Q 014901 234 KTPPMKALELWR-ESP-AVLLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 234 ~G~~VsLsdL~~-~~p-vVLvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
+|.++-|.+.+. ++. -|++|-=..-++-.+..+..|.+.+
T Consensus 14 D~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L 55 (167)
T cd02979 14 DALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDAL 55 (167)
T ss_pred CCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHH
Confidence 588898887765 444 4666654445667777777766544
No 210
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=37.71 E-value=68 Score=23.83 Aligned_cols=21 Identities=19% Similarity=-0.059 Sum_probs=17.1
Q ss_pred EeecCCCCcchHHHHHHHHhc
Q 014901 252 LCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~ 272 (416)
.+|...+||+|+.-...|...
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 467888999999887777765
No 211
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=35.11 E-value=2.2e+02 Score=31.74 Aligned_cols=40 Identities=5% Similarity=-0.130 Sum_probs=24.6
Q ss_pred CCCceechhhcc-CC-CEEEEeecCCCCcchHHHHHHHHhcc
Q 014901 234 KTPPMKALELWR-ES-PAVLLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 234 ~G~~VsLsdL~~-~~-pvVLvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
++.++-|.+.+. ++ ..|++|--..-++.....+..|.+.+
T Consensus 479 d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l 520 (634)
T PRK08294 479 DAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFL 520 (634)
T ss_pred CCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHH
Confidence 477888776553 43 45666655555567766666665443
No 212
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.96 E-value=37 Score=26.11 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=17.7
Q ss_pred EEeecCCCCcchHHHHHHHHhcc
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
+.+|-..+||+|+.-...|.+.-
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g 24 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG 24 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC
Confidence 45677789999999887776653
No 213
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=34.73 E-value=29 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=33.5
Q ss_pred chhhhhhccccccchhhHhhcCCCCCccccccChhhhHHhhhhH
Q 014901 5 AMEDFVGNGVLKGQLPKLLEEGWDDVPTLKVMNAEDMDAINMTQ 48 (416)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~~~ 48 (416)
++.+|+-.-=|....+.| ..|..|..+|-.|+.+|+..|+++.
T Consensus 7 ~V~~WL~~~~l~~y~~~F-~~~~i~g~~L~~lt~~dL~~lgi~~ 49 (64)
T PF00536_consen 7 DVSEWLKSLGLEQYAENF-EKNYIDGEDLLSLTEEDLEELGITK 49 (64)
T ss_dssp HHHHHHHHTTGGGGHHHH-HHTTSSHHHHTTSCHHHHHHTT-SS
T ss_pred HHHHHHHHCCCHHHHHHH-HcCCchHHHHHhcCHHHHHHcCCCC
Confidence 345555554556677888 9999999999999999999998875
No 214
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.32 E-value=90 Score=28.96 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=41.7
Q ss_pred cCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHH
Q 014901 245 RESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEF 315 (416)
Q Consensus 245 ~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~l 315 (416)
.+.||||.| .-.||.-|+.-.-.|.++..++ +--+++.-|=-++.-+...+|.=..+|--|+-+.+.+.
T Consensus 60 S~~PVlVdF-~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 60 SDVPVLVDF-HAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred cCCCEEEEE-ecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 357887776 4579999999888888776665 22345555544333222344433455555555555544
No 215
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=33.58 E-value=35 Score=31.90 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe--cCChhhHHhh-h--------cCCCCCceeeeccchH
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL--HEYIESEVKD-F--------WPRYWGGVVVYDQGME 314 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs--pEs~~~~ik~-F--------~~~~l~f~VLsDp~r~ 314 (416)
++| |++.+=..||..|+...++--+...-.+-++-..|.|- .|.... +.. | ...+||-.|+.+|+.+
T Consensus 37 ~Kp-Ifl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pd-id~~y~~~~~~~~~~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 37 NKP-IFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPD-IDKIYMNAVQAMSGSGGWPLTVFLTPDGK 114 (163)
T ss_dssp T---EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HH-HHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred CCc-EEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCcc-HHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence 455 45555588999999988866544433333444556654 222211 222 2 1267888899999875
Q ss_pred HH
Q 014901 315 FF 316 (416)
Q Consensus 315 lY 316 (416)
.+
T Consensus 115 p~ 116 (163)
T PF03190_consen 115 PF 116 (163)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 216
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=51 Score=35.99 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=50.8
Q ss_pred echhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc--CCeEEEEecCChhhHHhhhcCCCCC-ceeeeccch
Q 014901 239 KALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL--GIQLFAVLHEYIESEVKDFWPRYWG-GVVVYDQGM 313 (416)
Q Consensus 239 sLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al--GV~LVaIspEs~~~~ik~F~~~~l~-f~VLsDp~r 313 (416)
.+.++......|++=|--+||.-|...+-++.++...+.+. .+.|.=|=...-.....+|.-.++| -.|+-+-..
T Consensus 34 nf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~ 111 (493)
T KOG0190|consen 34 NFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRS 111 (493)
T ss_pred cHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCc
Confidence 36777888888888888999999999999999999999987 5566555432222223344322333 336655553
No 217
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=31.43 E-value=46 Score=28.61 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=27.3
Q ss_pred CCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 257 PGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 257 ~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
.|||.|..-+.+.++....|++- |+||++.
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf~ 34 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAFI 34 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEEE
Confidence 58999999999999999999997 9999975
No 218
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=31.25 E-value=4.1e+02 Score=28.50 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCceechhhccCCCEEEEeecCCCCcchHHHHHHHH-hccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccch
Q 014901 235 TPPMKALELWRESPAVLLCIRRPGCIMCRAEAHQLY-AKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGM 313 (416)
Q Consensus 235 G~~VsLsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls-~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r 313 (416)
|....+.++...+.++|.| +|.- ...+. .....++..|+.+|.+.+..... . -..+++.|++.
T Consensus 427 ~~~~~~d~~~~~~~~ll~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~d~~g 490 (538)
T PRK06183 427 GDRGLLDDVLGPGFAVLGW----GCDP----LAGLSDEQRARWRALGARFVQVVPAVQAH----T----AQDDHDSDVDG 490 (538)
T ss_pred CCcccchhccCCceEEEEe----cCCc----hhcCCHHHHHHHHHcCCeEEEEecccccc----c----CCCceeecCCc
Confidence 3344566677667777765 2210 11111 11233677899999998764321 0 13357889988
Q ss_pred HHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCHHHH
Q 014901 314 EFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPLAEV 393 (416)
Q Consensus 314 ~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~~eV 393 (416)
.+.+.|+.. -++.+||.||+ -|.+. .+..+.+.+
T Consensus 491 ~~~~~~~~~---------------------------------------~~~~~lvRPD~-~v~~~------~~~~~~~~~ 524 (538)
T PRK06183 491 ALRAWLARH---------------------------------------GASAVLLRPDR-YVAAA------ADAQTLGAL 524 (538)
T ss_pred hHHHHHHhC---------------------------------------CCEEEEECCCE-EEEEe------eCHHHHHHH
Confidence 887765542 02579999994 44432 233466777
Q ss_pred HHHHHhhh
Q 014901 394 IEICTQLQ 401 (416)
Q Consensus 394 LaAlk~l~ 401 (416)
++++...-
T Consensus 525 ~~~l~~~~ 532 (538)
T PRK06183 525 LAALAALL 532 (538)
T ss_pred HHHHHhhc
Confidence 77775543
No 219
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=30.20 E-value=66 Score=30.48 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=25.0
Q ss_pred EEEeecCCCCcchHH-HHHHHHhccchhhhcCCeEEEEe-cCChhhHHhhhcC----CCCCceeeeccc
Q 014901 250 VLLCIRRPGCIMCRA-EAHQLYAKKPIFDALGIQLFAVL-HEYIESEVKDFWP----RYWGGVVVYDQG 312 (416)
Q Consensus 250 VLvFyRg~gCP~Cn~-el~~Ls~~~peL~alGV~LVaIs-pEs~~~~ik~F~~----~~l~f~VLsDp~ 312 (416)
|+.| ||+++. ++.++. .++.+.|+.+|+|+ ...-+..+.+++. ..++-+++-|++
T Consensus 85 Vllf-----s~~~~~~e~~~~a---~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~Ed 145 (172)
T PF10740_consen 85 VLLF-----SPFSTDEEAVALA---KQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTED 145 (172)
T ss_dssp EEEE-----ES-S--HHHHHHH---HHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TT
T ss_pred EEEE-----eCCCCCHHHHHHH---HHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCC
Confidence 5666 555555 555554 45778899999999 3332223444442 346667777777
No 220
>PF11549 Sec31: Protein transport protein SEC31; InterPro: IPR021614 Sec31 is involved in COPII coat formation as it forms through the sequential binding of three cytoplasmic proteins: Sar1, Sec23/24 and Sec13/31. Sec13/31 is recruited by the pre-budding complex and polymerisation of Sec13/31 occurs to form an octahedral cage that is the outer shell of the COPII coat []. Sec13/31 is a hetero-tetramer which is organised as a linear array of alpha-solenoid and beta-propeller domains to form a rod in which twenty-four copies assemble to form the COPII cub-octahedron []. ; PDB: 2QTV_D.
Probab=29.70 E-value=19 Score=27.49 Aligned_cols=21 Identities=43% Similarity=0.974 Sum_probs=8.0
Q ss_pred ccccccchhhH---hhcCCCCCcc
Q 014901 12 NGVLKGQLPKL---LEEGWDDVPT 32 (416)
Q Consensus 12 ~~~l~~~~~~~---~~~g~~~~~~ 32 (416)
..++-||-|.| .+|||.|.|-
T Consensus 8 ~~~~SGQ~PhlNkkaNdGWNDLpl 31 (51)
T PF11549_consen 8 PNVYSGQTPHLNKKANDGWNDLPL 31 (51)
T ss_dssp -----SSS-TT-HHHHS-TT---S
T ss_pred cccccCcCCcccccccCcccccch
Confidence 45677777766 4599999984
No 221
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=29.22 E-value=34 Score=38.97 Aligned_cols=26 Identities=23% Similarity=0.578 Sum_probs=23.9
Q ss_pred CCCCCccccccChhhhHHhhhhHHhhhH
Q 014901 26 GWDDVPTLKVMNAEDMDAINMTQQQKDA 53 (416)
Q Consensus 26 g~~~~~~~k~~~~~~~~~~~~~~~~~~~ 53 (416)
.|||.|..|++++..++-| |..||.|
T Consensus 406 eydqlppf~~l~ksq~~kl--~k~q~k~ 431 (763)
T TIGR00993 406 EYDQLPPFKPLTKAQMAKL--SKEQRKA 431 (763)
T ss_pred cccccCCCccccHHHHHHH--hHHHHHH
Confidence 8999999999999999988 8888864
No 222
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=28.68 E-value=58 Score=24.81 Aligned_cols=23 Identities=22% Similarity=-0.025 Sum_probs=18.4
Q ss_pred EEEeecCCCCcchHHHHHHHHhc
Q 014901 250 VLLCIRRPGCIMCRAEAHQLYAK 272 (416)
Q Consensus 250 VLvFyRg~gCP~Cn~el~~Ls~~ 272 (416)
++.+|.+..||+|+.-.-.|...
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~ 23 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEK 23 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHc
Confidence 36788999999998877777664
No 223
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=28.39 E-value=54 Score=25.55 Aligned_cols=61 Identities=10% Similarity=-0.085 Sum_probs=32.6
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeeeccchHHH
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEFF 316 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~-~l~f~VLsDp~r~lY 316 (416)
+.+|...+||+|+.-.-.|.+.--. .+++.|.....+..-..|.+ + .-..|++.|.+..++
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~-----~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~ 63 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLR-----CEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIIC 63 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCC-----CEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEE
Confidence 3578889999997766555554322 34565543221111123443 2 235577777654433
No 224
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=28.04 E-value=1.3e+02 Score=27.71 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCceechhhcc-CC-CEEEEeecCCCCcchHHHHHHHHhcc-------chhhhc------CCeEEEEecCChhh-HHhh
Q 014901 234 KTPPMKALELWR-ES-PAVLLCIRRPGCIMCRAEAHQLYAKK-------PIFDAL------GIQLFAVLHEYIES-EVKD 297 (416)
Q Consensus 234 ~G~~VsLsdL~~-~~-pvVLvFyRg~gCP~Cn~el~~Ls~~~-------peL~al------GV~LVaIspEs~~~-~ik~ 297 (416)
+|.++.|.+++. ++ .=|++|-=..-.+-|...+..|.+.+ ..|... -+.++.|.+....+ ++.+
T Consensus 46 D~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~~~~~I~~~~~~~~e~~d 125 (169)
T PF07976_consen 46 DGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSVFDVLLIHSSPRDEVELFD 125 (169)
T ss_dssp TTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSSEEEEEEESS-CCCS-GGG
T ss_pred CCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCeeEEEEEecCCCCceeHHH
Confidence 699999988765 44 45777776666666655555555433 122222 27788888654322 1222
Q ss_pred hcC--------CCCC-ceeeecc------chHHHHHhCCCc
Q 014901 298 FWP--------RYWG-GVVVYDQ------GMEFFKALGGGK 323 (416)
Q Consensus 298 F~~--------~~l~-f~VLsDp------~r~lYkALGl~r 323 (416)
+=+ .++. ..||+|. ...+|+.||+.+
T Consensus 126 lP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 126 LPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp S-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 211 1222 3499996 489999999863
No 225
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=27.73 E-value=1.6e+02 Score=21.96 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=16.7
Q ss_pred EeecCCCCcchHHHHHHHHhcc
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKK 273 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~ 273 (416)
.+|-..+||+|+.-...|.+.-
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g 23 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG 23 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC
Confidence 4566789999999888776543
No 226
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=27.70 E-value=1e+02 Score=25.95 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=32.4
Q ss_pred CCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CC-CCceeeeccchHHHH
Q 014901 256 RPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RY-WGGVVVYDQGMEFFK 317 (416)
Q Consensus 256 g~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~-l~f~VLsDp~r~lYk 317 (416)
...||||+...-.|.+.- .-.+++-|-+.... +.|.+ +. =..|++.|.+..+|.
T Consensus 19 ~g~cpf~~rvrl~L~eKg-----i~ye~~~vd~~~~p---~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKG-----VVFNVTTVDMKRKP---EDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCCChhHHHHHHHHHHCC-----CceEEEEeCCCCCC---HHHHHhCCCCCCCEEEECCEEecC
Confidence 378999999988887752 22355666554432 23433 21 235688887665554
No 227
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=27.24 E-value=68 Score=29.16 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=27.4
Q ss_pred cCCCCcccceEEEEecCCCcEEEEEecCCCCCCC
Q 014901 355 FKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWA 388 (416)
Q Consensus 355 ~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDra 388 (416)
..||....-|.|.-++.|+.|.|.|.++. +.|+
T Consensus 87 ~~GD~V~f~GeYe~n~kggvIHWTH~dp~-~~h~ 119 (131)
T PF11948_consen 87 QKGDQVEFYGEYEWNPKGGVIHWTHHDPR-GRHP 119 (131)
T ss_pred CCCCEEEEEEEEEECCCCCEEEeeccCCC-CCCC
Confidence 35888778899999998889999999885 5555
No 228
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=26.92 E-value=6.8e+02 Score=25.41 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=69.7
Q ss_pred cCCCCceechhhccCCCEE-EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeec
Q 014901 232 KTKTPPMKALELWRESPAV-LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYD 310 (416)
Q Consensus 232 ~~~G~~VsLsdL~~~~pvV-LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsD 310 (416)
+.+|++|-...- .++.+. ++|+|.. -....+.+|++..|++. .+++++.|+-+.. -.+...++.|..+.|
T Consensus 89 n~~G~pvl~s~~-~~~~~~gvf~s~qe---dA~afL~~lk~~~p~l~-~~~kV~pvsL~~v----Ykl~~e~l~F~fiP~ 159 (270)
T TIGR00995 89 NAQNEFVLASDN-DGEKSIGLLCFRQE---DAEAFLAQLRKRKPEVG-SQAKVVPITLDQV----YKLKVEGIGFRFLPD 159 (270)
T ss_pred cCCCCeEEEECC-CCCceEEEEECCHH---HHHHHHHHHHhhCcccc-CCceEEEEEHHHH----HHHhhcCccEEEeCC
Confidence 446888777642 233333 3333321 12344566666677774 6899999985543 222234466666655
Q ss_pred cchHHHHHhCCCcccccccccccccCHHHHHHHHHHHhcCCccccCCCCcccceEEEEecCCCcEEEEEecCCCCCCCCH
Q 014901 311 QGMEFFKALGGGKLLKDKFLSGFLLNPRAIANYKRARTLGVEQNFKGEGEIKGGLFIVGRGRSGIAYQFIERNFGDWAPL 390 (416)
Q Consensus 311 p~r~lYkALGl~r~~r~s~~sgfll~P~v~~~~~rA~~~G~~gn~~GD~lqlGGtFVId~gG~~I~yah~d~d~gDrad~ 390 (416)
+.. +-.|+++. .....|+ .|=++-..+-++|.++++.+.=-|.++
T Consensus 160 ~~q-V~~A~~ll----------------------~~~~~~~----~GVPlF~~~~Lti~~~n~~~iP~FF~K-------- 204 (270)
T TIGR00995 160 PAQ-IKNALELP----------------------AANSEYF----DGVPVFQSGLLVVQKKNERYCPVYFSK-------- 204 (270)
T ss_pred HHH-HHHHHHHH----------------------hcCccCC----CCccEEeecceEEEeCCeEEEeeEeeH--------
Confidence 543 22222211 0000111 122222347778878777777777776
Q ss_pred HHHHHHHHhhhhhhccc
Q 014901 391 AEVIEICTQLQDQQRDQ 407 (416)
Q Consensus 391 ~eVLaAlk~l~~~~~~~ 407 (416)
+++-+.+.+++.++.+-
T Consensus 205 edlq~~L~~~kkq~p~l 221 (270)
T TIGR00995 205 EDIEQELSKFKRESPGM 221 (270)
T ss_pred HHHHHHHHHHhHhCcCc
Confidence 67777777776666433
No 229
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=26.68 E-value=1.1e+02 Score=24.71 Aligned_cols=56 Identities=9% Similarity=-0.100 Sum_probs=30.8
Q ss_pred EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeecc
Q 014901 250 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQ 311 (416)
Q Consensus 250 VLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp 311 (416)
.+.+|-...||+|+.-...|...--.+ +++-|.............+ .-..|++.+.
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~-----~~~~v~~~~~~~~~~~~np-~~~vPvL~~~ 73 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPH-----EVININLKDKPDWFLEKNP-QGKVPALEID 73 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCC-----eEEEeCCCCCcHHHHhhCC-CCCcCEEEEC
Confidence 366677888999998777776643333 4444443222111222211 3356777765
No 230
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=26.34 E-value=53 Score=32.74 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=30.6
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhc
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDAL 279 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~al 279 (416)
-.+|..++++.|+|.==.|||||-.+-=.|...+..|-..
T Consensus 51 n~d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 51 NQDLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred CcccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 3567778888888888889999988877777666666443
No 231
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=26.32 E-value=1e+02 Score=33.56 Aligned_cols=40 Identities=8% Similarity=0.073 Sum_probs=27.7
Q ss_pred CCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 246 ESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 246 ~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
++|+-|.+|=..|||+|..-++.+.+...+.. ++..-.|-
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~ 514 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMID 514 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEE
Confidence 57998989999999999987777655443321 45544443
No 232
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=25.55 E-value=70 Score=23.84 Aligned_cols=59 Identities=14% Similarity=-0.081 Sum_probs=30.9
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-C-CCCceeeeccchHH
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-R-YWGGVVVYDQGMEF 315 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~-~l~f~VLsDp~r~l 315 (416)
.+|...+||+|+.-...|...--.+ +.+-|.....+.....|.+ + .-..|++.|.+..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i 62 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPY-----EWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVL 62 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCc-----EEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEE
Confidence 4677889999997766666543233 4455543211111123332 2 23557777765433
No 233
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=25.43 E-value=66 Score=27.64 Aligned_cols=64 Identities=23% Similarity=0.288 Sum_probs=41.8
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcCCCCCcee---eeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWPRYWGGVV---VYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVa--IspEs~~-~~ik~F~~~~l~f~V---LsDp~r~lYkALGl~ 322 (416)
|.||-...|.-|+....-|.+. |+.+.. |..+.+. ..+..+.. .++.+. +.......|+.+|+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~p~t~~el~~~l~-~~g~~~~~~lin~~~~~~~~l~~~ 70 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDK-------GIEPEVVKYLKNPPTKSELEAIFA-KLGLTVAREMIRTKEALYKELGLS 70 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-------CCCeEEEeccCCCcCHHHHHHHHH-HcCCchHHHHHhcCCcHHHHcCCC
Confidence 4689999999999988877764 444333 3333332 13555554 223333 678899999999986
No 234
>PRK10026 arsenate reductase; Provisional
Probab=23.90 E-value=1.2e+02 Score=27.60 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=45.3
Q ss_pred EEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 250 VLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 250 VLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
-+.+|-...|.-|+..+.-|.+.-=.+ .++=+..+.+. .+++.+.. .+++..-+.-.....|+.+|+.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~-----~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~ 72 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEP-----TIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLA 72 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCc-----EEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCC
Confidence 367999999999999988887753222 23333333332 23666664 4554455667888999999986
No 235
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=23.59 E-value=48 Score=33.95 Aligned_cols=94 Identities=24% Similarity=0.458 Sum_probs=63.1
Q ss_pred cccchhhHhhcCCCC-Ccc------------ccccChhhhHHhhhhHHhhhHHHHhhhccchhhhhhhHHHHHcCCChHH
Q 014901 15 LKGQLPKLLEEGWDD-VPT------------LKVMNAEDMDAINMTQQQKDALEIRSYLHDRALMQYADIFEASGKSLPE 81 (416)
Q Consensus 15 l~~~~~~~~~~g~~~-~~~------------~k~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~l~~y~~~~e~~~~~l~~ 81 (416)
+|..-.-++.+||-+ =|+ -|+|+.+++++|=-+.---.-++|| ||.++| -|=|||...+|
T Consensus 81 lR~fy~fl~~E~~~~~dP~~~l~~PK~~~~LPk~Ls~~eve~Ll~~~~~~~p~~LR----drAmlE---LLYATGlRVSE 153 (300)
T COG4974 81 LRSFYQFLIREGLREDDPTRLLDSPKLPKRLPKFLSEEEVEALLEAPDEDTPLGLR----DRAMLE---LLYATGLRVSE 153 (300)
T ss_pred HHHHHHHHHHCCCcccCchhhhcCCCCCCcCCcccCHHHHHHHHhCCCCCCcHhHH----HHHHHH---HHHHcCChHHH
Confidence 444555566799842 232 3789999999984433222346666 788887 47899999999
Q ss_pred HhccCcccchhhccc----ccccccccccccCCCCCCC
Q 014901 82 LLNLSTGDLSSQFGM----KRGHMARFKDRTSACSDPM 115 (416)
Q Consensus 82 l~~~~~~~l~~~~~m----~~~h~~~f~~~~~~~~~~~ 115 (416)
|.+++-.|+....|. -||--.|.+--+..|...+
T Consensus 154 lv~L~l~dv~~~~~~v~V~GKG~KeR~VP~g~~A~~~l 191 (300)
T COG4974 154 LVGLTLSDVDLRQGVVRVRGKGNKERLVPFGEEAVEAL 191 (300)
T ss_pred HhcCcHhhhccccCeEEEEccCCceeeeechHHHHHHH
Confidence 999999999887321 1566666665555544433
No 236
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.41 E-value=61 Score=32.69 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=18.9
Q ss_pred eecCCCCcchHH--HHHHHHhccchhhhcCCeEEEEe
Q 014901 253 CIRRPGCIMCRA--EAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 253 FyRg~gCP~Cn~--el~~Ls~~~peL~alGV~LVaIs 287 (416)
.++|.|||.|-- -+..+.+...++.-..-+.|.|+
T Consensus 5 ~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs 41 (280)
T PRK11869 5 KYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS 41 (280)
T ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 468899999943 34445444444322222344444
No 237
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=22.99 E-value=68 Score=33.79 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=86.2
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe-----cCChhhHHhhhcCCCCCceeeeccchH
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL-----HEYIESEVKDFWPRYWGGVVVYDQGME 314 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs-----pEs~~~~ik~F~~~~l~f~VLsDp~r~ 314 (416)
+.+|+.++ |-++.|+|||.|-.-..++-....--...|+-+...+ |++..+ +.+-+..+-.-.++.-|--.
T Consensus 52 ir~LLp~~---IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~S-L~~ara~GadVriVYSpldA 127 (369)
T TIGR00075 52 LRDLLPEN---LELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPGSGGS-LLQARAEGADVRIVYSPMDA 127 (369)
T ss_pred hHhhCCCC---cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCCCCCC-HHHHHhCCCCEEEEeCHHHH
Confidence 56666664 7888999999998877777655543334556555554 555443 43333344445544444433
Q ss_pred HHHHhCCCcccccccc-ccc-ccCHHHHHHHHHHHhcCCcc---------------------ccCCCCcccceEEEEecC
Q 014901 315 FFKALGGGKLLKDKFL-SGF-LLNPRAIANYKRARTLGVEQ---------------------NFKGEGEIKGGLFIVGRG 371 (416)
Q Consensus 315 lYkALGl~r~~r~s~~-sgf-ll~P~v~~~~~rA~~~G~~g---------------------n~~GD~lqlGGtFVId~g 371 (416)
+--|-.-. .+..-++ -|| .-.|.+-..+..|...|+.. +.+=|++..||-.-.=.|
T Consensus 128 l~iA~~nP-dk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I~G 206 (369)
T TIGR00075 128 LKIAKENP-DRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTIIG 206 (369)
T ss_pred HHHHHHCC-CCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEEec
Confidence 32221110 0000000 022 01244444445554443311 111245667776543333
Q ss_pred CCcEEEEEecCCCCCC-----CCHHHHHHHHHhhhhhhccccc
Q 014901 372 RSGIAYQFIERNFGDW-----APLAEVIEICTQLQDQQRDQSE 409 (416)
Q Consensus 372 G~~I~yah~d~d~gDr-----ad~~eVLaAlk~l~~~~~~~~~ 409 (416)
.=.|.|.-.+|+-- -++.|||.++..+..|...+.-
T Consensus 207 --~~~y~~l~~~y~~P~VVaGFEp~DiL~~i~~ll~qi~~g~~ 247 (369)
T TIGR00075 207 --AKPYAPIAEKYKIPIVIAGFEPVDILQAIYMLLKQAISGEA 247 (369)
T ss_pred --cchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCCc
Confidence 34788887777654 4789999999888777655543
No 238
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=22.84 E-value=59 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred cCCCCcchHHHHHHHHhccchhhhcCCeEEEE
Q 014901 255 RRPGCIMCRAEAHQLYAKKPIFDALGIQLFAV 286 (416)
Q Consensus 255 Rg~gCP~Cn~el~~Ls~~~peL~alGV~LVaI 286 (416)
-...||+|+.++.-+....+ ...++++.+
T Consensus 3 YDg~C~lC~~~~~~l~~~d~---~~~l~~~~~ 31 (114)
T PF04134_consen 3 YDGDCPLCRREVRFLRRRDR---GGRLRFVDI 31 (114)
T ss_pred ECCCCHhHHHHHHHHHhcCC---CCCEEEEEC
Confidence 35789999999999988732 123455555
No 239
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=22.78 E-value=31 Score=39.82 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=60.7
Q ss_pred HHHhhhccchhhhhhhHHHHHcCCChHHHhccCcccchhhcccccccccccccccCCCCCCCCCCCccccccCcCcCCCC
Q 014901 54 LEIRSYLHDRALMQYADIFEASGKSLPELLNLSTGDLSSQFGMKRGHMARFKDRTSACSDPMPKSDTLTARNNSSIPSRN 133 (416)
Q Consensus 54 ~~~r~~l~~~~l~~y~~~~e~~~~~l~~l~~~~~~~l~~~~~m~~~h~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (416)
-|+++||---+|-+|.|.++..-+.=+||+-+-..||-.---||-|||-|-+ |++.=...-.-++|+..+-..|.
T Consensus 1001 eeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLkdlgvtkVGhvkril-----~aIkdl~~~~~~a~~a~~~~~~~ 1075 (1099)
T KOG1170|consen 1001 EEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLKDLGVTKVGHVKRIL-----SAIKDLRAQNQRARRAQARKKRV 1075 (1099)
T ss_pred HHHHHHHhccccchhhhhhhccCcccceeeecCcccccccchhhhHHHHHHH-----HHHHHHHhcchhhhhhhhhhhcc
Confidence 4899999999999999999999888899999999999888889999999976 44443322123445444444444
Q ss_pred CCCCcc
Q 014901 134 NSIYKS 139 (416)
Q Consensus 134 ~~~~~~ 139 (416)
+--.+|
T Consensus 1076 ~~~~~~ 1081 (1099)
T KOG1170|consen 1076 AKDYKP 1081 (1099)
T ss_pred ccccCC
Confidence 444444
No 240
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=22.77 E-value=1.8e+02 Score=28.20 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=39.2
Q ss_pred ccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcC-CCCC
Q 014901 244 WRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWP-RYWG 304 (416)
Q Consensus 244 ~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~-~~l~ 304 (416)
+..+..+.+|++ -.|+-|-..+..|... ...+.|..|+.+.-+..|..|.. +..+
T Consensus 106 ~~~~~rlalFvk-d~C~~C~~~~~~l~a~-----~~~~Diylvgs~~dD~~Ir~WA~~~~Id 161 (200)
T TIGR03759 106 LQGGGRLALFVK-DDCVACDARVQRLLAD-----NAPLDLYLVGSQGDDERIRQWANRHQID 161 (200)
T ss_pred cCCCCeEEEEeC-CCChHHHHHHHHHhcC-----CCceeEEEecCCCCHHHHHHHHHHcCCC
Confidence 345667889999 8999999999999763 33567888874444445788774 4543
No 241
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=22.54 E-value=96 Score=26.49 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=42.7
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEE--EecCChh-hHHhhhcC-CCCCceeeeccchHHHHHhCCC
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFA--VLHEYIE-SEVKDFWP-RYWGGVVVYDQGMEFFKALGGG 322 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVa--IspEs~~-~~ik~F~~-~~l~f~VLsDp~r~lYkALGl~ 322 (416)
|.||-...|.-|+...+-|.+. |+.+.. |.-+.+. .++..+.. .+.+..-+.......|+.+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~ 69 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEA-------GIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLA 69 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHC-------CCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCC
Confidence 4688999999999987777665 433333 3333332 23555553 3444566778888999999886
No 242
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=21.89 E-value=86 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=27.2
Q ss_pred EEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe
Q 014901 251 LLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL 287 (416)
Q Consensus 251 LvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs 287 (416)
|.||--+-||+|-.....|.++..+....-+...-+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 6788899999999999999888777733333333343
No 243
>PHA01812 hypothetical protein
Probab=21.84 E-value=24 Score=30.24 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=21.0
Q ss_pred cccchhhcccccccccc--cccccCCCCCC
Q 014901 87 TGDLSSQFGMKRGHMAR--FKDRTSACSDP 114 (416)
Q Consensus 87 ~~~l~~~~~m~~~h~~~--f~~~~~~~~~~ 114 (416)
-|+|..+||||+..+.| |.+.++.-+.|
T Consensus 30 lselvekygmkkeyivralftnkeskfgeq 59 (122)
T PHA01812 30 LSELVEKYGMKKEYIVRALFTNKESKFGEQ 59 (122)
T ss_pred HHHHHHHhCccHHHHHHHHHcCcccccccc
Confidence 35788999999999876 66666655443
No 244
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=21.31 E-value=77 Score=33.37 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=86.8
Q ss_pred chhhccCCCEEEEeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEe-----cCChhhHHhhhcCCCCCceeeeccchH
Q 014901 240 ALELWRESPAVLLCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVL-----HEYIESEVKDFWPRYWGGVVVYDQGME 314 (416)
Q Consensus 240 LsdL~~~~pvVLvFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIs-----pEs~~~~ik~F~~~~l~f~VLsDp~r~ 314 (416)
+.+|+.++ |-++.|+|||.|-.-..++-+...--..-|+-+...+ |++..+ +.+-+..+-.-.++..|-..
T Consensus 46 ir~lLP~~---ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs~~S-L~~ara~GadVriVYSpldA 121 (364)
T PRK15062 46 LRSLLPEN---IELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGSKGS-LLEAKAEGADVRIVYSPLDA 121 (364)
T ss_pred hHhhCCCC---cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCCcCC-HHHHHhCCCCEEEEeCHHHH
Confidence 56666664 7888999999998777777665543334455555443 555443 44333345455555555443
Q ss_pred HHHHhCCCcccccccc-ccc-ccCHHHHHHHHHHHhcCCcc---------------------ccCCCCcccceEEEEecC
Q 014901 315 FFKALGGGKLLKDKFL-SGF-LLNPRAIANYKRARTLGVEQ---------------------NFKGEGEIKGGLFIVGRG 371 (416)
Q Consensus 315 lYkALGl~r~~r~s~~-sgf-ll~P~v~~~~~rA~~~G~~g---------------------n~~GD~lqlGGtFVId~g 371 (416)
+--|-.-. .+..-++ -|| .-.|.+-..+.+|...++.. +.+=|++..||-.-.=.|
T Consensus 122 l~iA~~nP-~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVstI~G 200 (364)
T PRK15062 122 LKIARENP-DKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVSTIIG 200 (364)
T ss_pred HHHHHHCC-CCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeEEEec
Confidence 32221110 0000000 022 11255444455555444321 011235666776543333
Q ss_pred CCcEEEEEecCCCCCC-----CCHHHHHHHHHhhhhhhccccc
Q 014901 372 RSGIAYQFIERNFGDW-----APLAEVIEICTQLQDQQRDQSE 409 (416)
Q Consensus 372 G~~I~yah~d~d~gDr-----ad~~eVLaAlk~l~~~~~~~~~ 409 (416)
.=.|.|.-.+|+-- -++.|||.++-.+..|-..+.-
T Consensus 201 --~~~y~~l~~~y~~P~VVaGFEp~DiL~ai~~lv~q~~~g~~ 241 (364)
T PRK15062 201 --TEPYEFLAEEYGIPVVVAGFEPLDILQSILMLVRQLEEGRA 241 (364)
T ss_pred --cchhHHHHHHcCCCeEEeccCHHHHHHHHHHHHHHHHCCCc
Confidence 34788887877654 4789999998888777655443
No 245
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=21.27 E-value=2e+02 Score=22.14 Aligned_cols=55 Identities=22% Similarity=0.080 Sum_probs=31.7
Q ss_pred ecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchH
Q 014901 254 IRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGME 314 (416)
Q Consensus 254 yRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~ 314 (416)
|...+||+|+.-.-.|....=. .+++-|.++..........+ .-..|++.|.+..
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i~-----~~~~~v~~~~~~~~~~~~~p-~~~vPvL~~~g~~ 56 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGIP-----YELVPVDPEEKRPEFLKLNP-KGKVPVLVDDGEV 56 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTEE-----EEEEEEBTTSTSHHHHHHST-TSBSSEEEETTEE
T ss_pred CCcCCChHHHHHHHHHHHcCCe-----EEEeccCcccchhHHHhhcc-cccceEEEECCEE
Confidence 5668999999887777653322 45666766553222222222 3356677665543
No 246
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=20.63 E-value=1.9e+02 Score=21.93 Aligned_cols=61 Identities=8% Similarity=-0.144 Sum_probs=31.7
Q ss_pred EeecCCCCcchHHHHHHHHhccchhhhcCCeEEEEecCChhhHHhhhcCCCCCceeeeccchHHHH
Q 014901 252 LCIRRPGCIMCRAEAHQLYAKKPIFDALGIQLFAVLHEYIESEVKDFWPRYWGGVVVYDQGMEFFK 317 (416)
Q Consensus 252 vFyRg~gCP~Cn~el~~Ls~~~peL~alGV~LVaIspEs~~~~ik~F~~~~l~f~VLsDp~r~lYk 317 (416)
.+|-...||+|+.-.-.|....-.+ +++.+.+...........+..-..|++.|.+..+++
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~-----~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~e 62 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPY-----EYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICE 62 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCC-----EEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeeh
Confidence 3566678999998877776643333 444444332111122221212356778776544433
Done!