Query 014902
Match_columns 416
No_of_seqs 250 out of 2199
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 01:11:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 2.7E-29 5.8E-34 240.0 26.4 265 27-356 3-280 (281)
2 COG3934 Endo-beta-mannanase [C 100.0 4.7E-31 1E-35 254.0 8.8 310 25-390 4-326 (587)
3 PRK09593 arb 6-phospho-beta-gl 100.0 9.4E-27 2E-31 236.4 24.3 309 51-391 71-471 (478)
4 PRK10150 beta-D-glucuronidase; 100.0 5.8E-26 1.3E-30 239.2 30.4 290 14-372 272-579 (604)
5 PRK09589 celA 6-phospho-beta-g 100.0 2.6E-26 5.7E-31 233.0 25.7 309 51-391 65-470 (476)
6 PLN02998 beta-glucosidase 100.0 1.3E-26 2.9E-31 235.6 23.5 310 51-392 80-487 (497)
7 TIGR03356 BGL beta-galactosida 100.0 1.7E-26 3.7E-31 232.2 23.8 301 52-384 53-425 (427)
8 PLN02814 beta-glucosidase 99.9 2.6E-26 5.5E-31 233.9 23.7 310 51-394 75-484 (504)
9 TIGR01233 lacG 6-phospho-beta- 99.9 4.2E-26 9.1E-31 231.2 25.1 308 51-391 51-462 (467)
10 PRK13511 6-phospho-beta-galact 99.9 5.3E-26 1.1E-30 231.0 24.4 309 51-392 52-465 (469)
11 PLN02849 beta-glucosidase 99.9 5.9E-26 1.3E-30 231.2 23.4 308 51-392 77-482 (503)
12 PRK15014 6-phospho-beta-glucos 99.9 1.2E-25 2.6E-30 228.1 25.5 308 52-391 68-471 (477)
13 COG2723 BglB Beta-glucosidase/ 99.9 1.4E-25 3E-30 220.5 21.6 308 52-391 58-451 (460)
14 PRK09852 cryptic 6-phospho-bet 99.9 3.3E-25 7.1E-30 224.4 25.0 308 52-391 70-467 (474)
15 PF00232 Glyco_hydro_1: Glycos 99.9 7.6E-27 1.6E-31 237.4 12.1 307 52-390 57-450 (455)
16 PF02836 Glyco_hydro_2_C: Glyc 99.9 7.7E-22 1.7E-26 190.6 23.8 158 18-225 1-158 (298)
17 PF02449 Glyco_hydro_42: Beta- 99.9 3.1E-21 6.6E-26 192.2 18.0 287 51-389 8-374 (374)
18 PRK10340 ebgA cryptic beta-D-g 99.8 1.8E-19 3.8E-24 198.4 25.9 234 14-358 314-550 (1021)
19 KOG0626 Beta-glucosidase, lact 99.8 6.7E-19 1.4E-23 174.8 24.3 310 52-392 90-508 (524)
20 PRK09525 lacZ beta-D-galactosi 99.8 4.3E-19 9.3E-24 195.0 25.2 244 14-358 330-576 (1027)
21 PF03198 Glyco_hydro_72: Gluca 99.7 8.4E-16 1.8E-20 144.3 19.6 279 10-372 3-293 (314)
22 PF07745 Glyco_hydro_53: Glyco 99.6 2.8E-14 6E-19 137.6 19.7 240 55-352 26-295 (332)
23 COG3250 LacZ Beta-galactosidas 99.6 1.6E-14 3.5E-19 153.6 17.1 155 13-227 279-435 (808)
24 smart00633 Glyco_10 Glycosyl h 99.6 5.6E-13 1.2E-17 125.7 21.6 228 80-371 3-244 (254)
25 PF13204 DUF4038: Protein of u 99.5 1.6E-12 3.4E-17 124.7 17.7 167 22-225 2-186 (289)
26 PF01301 Glyco_hydro_35: Glyco 99.4 6.4E-12 1.4E-16 122.0 17.9 168 24-218 1-173 (319)
27 PF12876 Cellulase-like: Sugar 99.4 5.6E-13 1.2E-17 104.7 5.9 75 175-269 5-88 (88)
28 PLN03059 beta-galactosidase; P 99.3 5.9E-11 1.3E-15 125.3 19.3 174 17-210 29-210 (840)
29 PF01229 Glyco_hydro_39: Glyco 99.3 4.1E-11 8.8E-16 123.3 13.8 297 51-390 37-360 (486)
30 COG3867 Arabinogalactan endo-1 99.3 1.5E-09 3.3E-14 100.1 21.5 271 33-353 39-342 (403)
31 COG2730 BglC Endoglucanase [Ca 99.2 9.8E-11 2.1E-15 117.8 14.5 114 55-192 75-193 (407)
32 COG1874 LacA Beta-galactosidas 99.1 8.4E-10 1.8E-14 115.0 14.8 175 20-217 3-191 (673)
33 PF00331 Glyco_hydro_10: Glyco 99.0 1.2E-08 2.6E-13 99.4 15.5 247 59-363 27-293 (320)
34 KOG2230 Predicted beta-mannosi 98.7 2.8E-07 6.2E-12 91.9 15.6 118 25-192 330-447 (867)
35 KOG0496 Beta-galactosidase [Ca 98.7 1.2E-07 2.7E-12 96.8 13.2 152 18-192 20-177 (649)
36 COG3693 XynA Beta-1,4-xylanase 98.6 4.2E-06 9.1E-11 79.0 18.6 223 78-363 67-310 (345)
37 COG5309 Exo-beta-1,3-glucanase 98.5 9.8E-06 2.1E-10 74.4 17.9 200 51-335 61-269 (305)
38 PF11790 Glyco_hydro_cc: Glyco 98.5 3.2E-06 6.9E-11 79.0 14.0 142 182-352 67-211 (239)
39 PF14488 DUF4434: Domain of un 98.5 7.1E-06 1.5E-10 72.0 15.0 139 50-224 17-160 (166)
40 COG3934 Endo-beta-mannanase [C 98.4 1.3E-09 2.9E-14 106.5 -11.6 350 14-392 34-471 (587)
41 PF14587 Glyco_hydr_30_2: O-Gl 98.2 0.00036 7.9E-09 68.4 22.1 299 31-366 14-367 (384)
42 COG5520 O-Glycosyl hydrolase [ 97.7 0.0017 3.7E-08 62.2 15.9 228 64-355 77-311 (433)
43 PF02638 DUF187: Glycosyl hydr 97.5 0.0069 1.5E-07 58.9 17.8 208 51-271 17-263 (311)
44 PF02055 Glyco_hydro_30: O-Gly 97.4 0.0093 2E-07 61.5 17.3 247 55-354 103-380 (496)
45 PF03662 Glyco_hydro_79n: Glyc 97.2 0.00047 1E-08 66.5 5.5 23 95-117 108-130 (319)
46 PLN02801 beta-amylase 96.8 0.048 1E-06 55.1 15.1 130 51-214 35-171 (517)
47 PLN02905 beta-amylase 96.6 0.052 1.1E-06 56.1 14.4 130 51-214 284-420 (702)
48 PF13200 DUF4015: Putative gly 96.6 0.75 1.6E-05 44.6 22.2 204 51-275 11-232 (316)
49 PLN02705 beta-amylase 96.5 0.016 3.5E-07 59.4 9.8 122 51-191 266-419 (681)
50 PLN00197 beta-amylase; Provisi 96.4 0.02 4.3E-07 58.4 9.7 122 51-191 125-277 (573)
51 PRK10785 maltodextrin glucosid 96.4 0.05 1.1E-06 57.8 13.3 67 51-117 177-247 (598)
52 PLN02161 beta-amylase 96.2 0.051 1.1E-06 55.0 11.3 129 51-213 115-250 (531)
53 TIGR01515 branching_enzym alph 96.1 0.13 2.7E-06 54.9 14.7 167 52-222 155-346 (613)
54 PF14871 GHL6: Hypothetical gl 96.1 0.033 7.2E-07 46.9 8.2 106 56-166 3-122 (132)
55 PLN02803 beta-amylase 96.0 0.058 1.3E-06 54.9 10.7 130 51-214 105-241 (548)
56 PRK05402 glycogen branching en 96.0 0.22 4.7E-06 54.3 16.0 164 53-222 265-455 (726)
57 PRK12313 glycogen branching en 96.0 0.28 6.2E-06 52.5 16.5 164 55-224 173-360 (633)
58 COG3664 XynB Beta-xylosidase [ 95.9 0.19 4.1E-06 49.6 13.2 246 61-370 13-277 (428)
59 PF01373 Glyco_hydro_14: Glyco 95.9 0.0087 1.9E-07 59.1 4.1 119 52-191 15-157 (402)
60 COG3534 AbfA Alpha-L-arabinofu 95.7 0.21 4.6E-06 49.8 13.0 179 54-271 50-246 (501)
61 TIGR02402 trehalose_TreZ malto 95.7 0.3 6.6E-06 51.2 15.1 147 50-218 108-271 (542)
62 smart00642 Aamy Alpha-amylase 95.7 0.04 8.7E-07 48.4 7.2 68 50-117 16-91 (166)
63 PRK14706 glycogen branching en 95.6 0.38 8.2E-06 51.4 15.6 163 54-222 169-355 (639)
64 cd06565 GH20_GcnA-like Glycosy 95.5 0.57 1.2E-05 45.3 15.3 163 50-224 14-185 (301)
65 PRK14705 glycogen branching en 95.5 0.57 1.2E-05 53.3 17.2 166 53-222 766-955 (1224)
66 PRK12568 glycogen branching en 95.2 1 2.2E-05 48.7 16.9 166 53-222 270-459 (730)
67 PLN02960 alpha-amylase 95.1 0.82 1.8E-05 49.9 16.2 162 54-223 418-609 (897)
68 PF01120 Alpha_L_fucos: Alpha- 95.0 0.78 1.7E-05 45.3 14.8 145 53-223 91-243 (346)
69 COG1649 Uncharacterized protei 95.0 0.75 1.6E-05 46.1 14.4 198 50-271 61-309 (418)
70 cd02742 GH20_hexosaminidase Be 94.6 2.1 4.5E-05 41.4 16.3 146 51-216 14-184 (303)
71 PF00128 Alpha-amylase: Alpha 94.5 0.052 1.1E-06 51.9 5.0 65 53-117 4-73 (316)
72 PLN02447 1,4-alpha-glucan-bran 94.5 1.3 2.8E-05 48.1 15.6 165 54-222 252-443 (758)
73 cd06564 GH20_DspB_LnbB-like Gl 93.8 3 6.4E-05 40.8 15.7 146 51-217 15-194 (326)
74 PLN02361 alpha-amylase 92.5 0.75 1.6E-05 46.3 9.3 86 27-117 8-97 (401)
75 PF00332 Glyco_hydro_17: Glyco 92.3 2.6 5.7E-05 40.9 12.7 112 56-224 16-129 (310)
76 cd06562 GH20_HexA_HexB-like Be 92.2 9.5 0.0002 37.7 16.7 109 51-166 16-147 (348)
77 cd06563 GH20_chitobiase-like T 92.2 8.1 0.00018 38.3 16.3 109 51-166 16-163 (357)
78 PRK09441 cytoplasmic alpha-amy 91.9 0.43 9.2E-06 49.4 7.1 65 53-117 22-102 (479)
79 COG0296 GlgB 1,4-alpha-glucan 91.9 2.4 5.1E-05 45.0 12.4 163 51-220 163-352 (628)
80 PRK10933 trehalose-6-phosphate 91.5 0.7 1.5E-05 48.6 8.2 68 50-117 30-102 (551)
81 PF07488 Glyco_hydro_67M: Glyc 91.4 1.5 3.2E-05 41.9 9.3 90 51-166 55-147 (328)
82 TIGR02456 treS_nterm trehalose 91.3 0.64 1.4E-05 48.8 7.8 68 50-117 25-97 (539)
83 PF00728 Glyco_hydro_20: Glyco 91.2 1.2 2.6E-05 43.8 9.2 153 51-223 16-215 (351)
84 TIGR02403 trehalose_treC alpha 91.1 0.76 1.7E-05 48.3 8.0 68 50-117 24-96 (543)
85 PRK03705 glycogen debranching 91.0 0.52 1.1E-05 50.5 6.7 59 58-117 184-263 (658)
86 PRK09505 malS alpha-amylase; R 90.6 0.93 2E-05 48.8 8.1 67 51-117 228-313 (683)
87 cd06568 GH20_SpHex_like A subg 90.6 8 0.00017 37.9 14.1 144 51-217 16-189 (329)
88 smart00812 Alpha_L_fucos Alpha 90.4 6.5 0.00014 39.4 13.6 138 54-219 82-226 (384)
89 cd06570 GH20_chitobiase-like_1 89.4 10 0.00022 36.9 13.6 64 51-117 16-89 (311)
90 TIGR01531 glyc_debranch glycog 88.7 1.5 3.3E-05 50.1 8.2 98 17-117 98-206 (1464)
91 PLN00196 alpha-amylase; Provis 88.6 1.6 3.4E-05 44.4 7.7 84 31-117 25-113 (428)
92 cd06603 GH31_GANC_GANAB_alpha 88.4 16 0.00034 35.9 14.5 129 51-192 22-165 (339)
93 TIGR02104 pulA_typeI pullulana 88.2 0.95 2.1E-05 48.3 6.2 143 57-221 168-345 (605)
94 PF12891 Glyco_hydro_44: Glyco 88.1 0.99 2.1E-05 41.7 5.4 58 157-222 107-176 (239)
95 PLN02784 alpha-amylase 88.1 3 6.5E-05 45.6 9.7 87 27-117 499-589 (894)
96 PF02065 Melibiase: Melibiase; 87.5 31 0.00066 34.8 16.0 176 32-224 40-233 (394)
97 PF05089 NAGLU: Alpha-N-acetyl 87.4 3.7 8.1E-05 39.9 9.0 152 50-222 16-215 (333)
98 TIGR02401 trehalose_TreY malto 87.0 2.6 5.6E-05 46.1 8.5 68 50-117 13-86 (825)
99 PRK09936 hypothetical protein; 87.0 29 0.00063 33.1 15.0 59 50-117 35-93 (296)
100 TIGR02103 pullul_strch alpha-1 86.8 13 0.00029 41.3 13.9 110 95-228 403-527 (898)
101 KOG2233 Alpha-N-acetylglucosam 86.6 2.6 5.6E-05 42.6 7.6 156 51-223 76-280 (666)
102 PRK14511 maltooligosyl trehalo 86.4 2.8 6.1E-05 46.1 8.5 67 51-117 18-90 (879)
103 TIGR02100 glgX_debranch glycog 86.4 1.9 4.1E-05 46.6 7.1 60 58-117 189-266 (688)
104 PF03659 Glyco_hydro_71: Glyco 85.9 2.9 6.3E-05 41.9 7.8 54 51-117 15-68 (386)
105 cd06602 GH31_MGAM_SI_GAA This 85.5 38 0.00082 33.3 15.3 159 51-223 22-199 (339)
106 COG0366 AmyA Glycosidases [Car 84.3 2.7 5.9E-05 43.3 7.1 68 50-117 26-98 (505)
107 COG1523 PulA Type II secretory 83.7 2.6 5.6E-05 45.3 6.6 58 59-117 206-286 (697)
108 PRK14507 putative bifunctional 83.5 3.8 8.3E-05 48.3 8.2 68 51-118 756-829 (1693)
109 PRK14510 putative bifunctional 82.8 2.6 5.7E-05 48.5 6.6 60 57-117 191-268 (1221)
110 PF07555 NAGidase: beta-N-acet 82.0 16 0.00034 35.4 10.7 68 49-118 11-78 (306)
111 cd06547 GH85_ENGase Endo-beta- 80.9 7.4 0.00016 38.3 8.2 94 101-222 51-145 (339)
112 COG3589 Uncharacterized conser 80.8 5.3 0.00011 38.7 6.8 151 52-225 15-179 (360)
113 cd06545 GH18_3CO4_chitinase Th 80.5 39 0.00085 31.5 12.8 93 96-224 46-138 (253)
114 TIGR02102 pullulan_Gpos pullul 80.4 5.8 0.00013 45.1 8.1 148 53-221 480-668 (1111)
115 PRK09856 fructoselysine 3-epim 80.2 3.8 8.2E-05 38.7 5.8 61 53-117 90-150 (275)
116 PF01261 AP_endonuc_2: Xylose 80.2 27 0.00059 30.8 11.3 130 53-219 27-158 (213)
117 PRK13398 3-deoxy-7-phosphohept 80.0 24 0.00052 33.5 11.0 85 18-119 16-101 (266)
118 cd06593 GH31_xylosidase_YicI Y 79.8 60 0.0013 31.3 14.8 157 50-224 21-205 (308)
119 TIGR03234 OH-pyruv-isom hydrox 77.2 6.6 0.00014 36.6 6.4 63 53-119 84-146 (254)
120 cd06592 GH31_glucosidase_KIAA1 77.1 30 0.00065 33.4 11.1 126 50-191 27-167 (303)
121 PRK08673 3-deoxy-7-phosphohept 77.0 21 0.00046 35.0 10.0 76 28-118 91-166 (335)
122 COG3623 SgaU Putative L-xylulo 76.5 41 0.00089 31.1 10.7 70 91-192 91-161 (287)
123 KOG2566 Beta-glucocerebrosidas 76.3 86 0.0019 31.2 14.9 173 151-366 226-419 (518)
124 TIGR01370 cysRS possible cyste 76.1 46 0.001 32.4 11.8 70 148-222 141-210 (315)
125 PRK13210 putative L-xylulose 5 75.8 7 0.00015 37.0 6.3 61 53-117 94-154 (284)
126 cd06600 GH31_MGAM-like This fa 75.4 75 0.0016 30.8 13.4 159 51-223 22-195 (317)
127 PF05913 DUF871: Bacterial pro 75.2 6.8 0.00015 38.8 6.1 58 51-118 12-69 (357)
128 cd02875 GH18_chitobiase Chitob 74.4 28 0.0006 34.5 10.3 91 100-225 68-158 (358)
129 PF01261 AP_endonuc_2: Xylose 73.7 7.1 0.00015 34.7 5.5 64 52-118 70-134 (213)
130 TIGR00542 hxl6Piso_put hexulos 73.7 11 0.00023 35.8 7.0 61 53-117 94-154 (279)
131 cd06595 GH31_xylosidase_XylS-l 73.7 27 0.00059 33.5 9.8 130 51-193 23-163 (292)
132 PRK12595 bifunctional 3-deoxy- 73.7 26 0.00056 34.8 9.7 76 28-118 116-191 (360)
133 cd06569 GH20_Sm-chitobiase-lik 73.7 15 0.00032 37.6 8.3 64 51-117 20-118 (445)
134 cd00019 AP2Ec AP endonuclease 73.2 11 0.00025 35.6 7.0 61 52-117 84-144 (279)
135 PRK14582 pgaB outer membrane N 73.0 1.1E+02 0.0024 33.1 14.8 166 52-224 333-537 (671)
136 TIGR02455 TreS_stutzeri trehal 72.9 9.3 0.0002 40.6 6.6 62 56-117 77-151 (688)
137 PRK13209 L-xylulose 5-phosphat 72.3 9.9 0.00022 36.0 6.4 61 53-117 99-159 (283)
138 PRK13397 3-deoxy-7-phosphohept 72.2 19 0.0004 33.8 7.8 62 51-118 27-88 (250)
139 cd06542 GH18_EndoS-like Endo-b 70.7 89 0.0019 29.0 12.3 100 95-224 50-151 (255)
140 PLN02763 hydrolase, hydrolyzin 70.3 1.4E+02 0.003 33.9 15.1 127 51-192 199-339 (978)
141 PF06415 iPGM_N: BPG-independe 69.8 26 0.00057 32.2 8.1 77 28-117 26-102 (223)
142 COG5016 Pyruvate/oxaloacetate 69.3 23 0.00051 35.3 8.0 64 33-117 83-146 (472)
143 TIGR00542 hxl6Piso_put hexulos 69.0 1E+02 0.0022 29.0 12.6 86 92-218 90-175 (279)
144 PF02057 Glyco_hydro_59: Glyco 68.8 21 0.00046 38.0 8.2 189 56-313 64-262 (669)
145 PRK14042 pyruvate carboxylase 68.6 19 0.00041 38.3 7.8 64 32-116 80-143 (596)
146 PLN02877 alpha-amylase/limit d 68.4 16 0.00034 40.9 7.4 23 95-117 465-487 (970)
147 PRK09997 hydroxypyruvate isome 67.8 17 0.00036 34.0 6.8 63 53-119 85-147 (258)
148 PRK09997 hydroxypyruvate isome 66.7 1.1E+02 0.0024 28.4 13.1 90 94-219 83-172 (258)
149 KOG0470 1,4-alpha-glucan branc 66.5 9.7 0.00021 40.7 5.1 62 53-117 255-332 (757)
150 PLN03244 alpha-amylase; Provis 65.0 1E+02 0.0022 34.0 12.3 122 95-221 440-582 (872)
151 PRK12677 xylose isomerase; Pro 64.0 16 0.00035 36.6 6.1 65 53-117 114-180 (384)
152 cd06604 GH31_glucosidase_II_Ma 63.8 58 0.0013 31.9 9.9 127 51-192 22-162 (339)
153 PF04914 DltD_C: DltD C-termin 63.3 37 0.00081 28.4 7.2 54 94-166 34-87 (130)
154 cd02874 GH18_CFLE_spore_hydrol 62.6 67 0.0014 31.0 10.0 95 99-223 48-142 (313)
155 TIGR01361 DAHP_synth_Bsub phos 61.0 45 0.00097 31.5 8.2 77 28-119 23-99 (260)
156 PF01055 Glyco_hydro_31: Glyco 59.5 1E+02 0.0023 31.2 11.3 127 51-192 41-183 (441)
157 PF07071 DUF1341: Protein of u 59.2 26 0.00057 31.5 5.7 46 53-112 135-180 (218)
158 PRK13396 3-deoxy-7-phosphohept 59.1 1.3E+02 0.0028 29.8 11.2 87 17-118 84-174 (352)
159 cd06598 GH31_transferase_CtsZ 58.9 1.1E+02 0.0024 29.6 10.9 125 51-192 22-167 (317)
160 PRK12581 oxaloacetate decarbox 58.8 40 0.00086 34.7 7.8 49 53-117 105-153 (468)
161 cd06601 GH31_lyase_GLase GLase 58.5 53 0.0011 32.2 8.5 116 51-193 22-137 (332)
162 KOG3698 Hyaluronoglucosaminida 58.1 65 0.0014 33.7 9.0 84 27-117 11-95 (891)
163 PRK13209 L-xylulose 5-phosphat 57.7 1.7E+02 0.0036 27.5 12.4 120 52-217 56-179 (283)
164 COG0276 HemH Protoheme ferro-l 57.6 1.2E+02 0.0026 29.5 10.5 107 99-215 105-219 (320)
165 PRK14565 triosephosphate isome 57.5 1.2E+02 0.0026 28.2 10.2 119 59-225 78-196 (237)
166 cd07937 DRE_TIM_PC_TC_5S Pyruv 57.3 40 0.00086 32.0 7.3 49 53-117 91-139 (275)
167 PLN02229 alpha-galactosidase 57.1 1.3E+02 0.0028 30.6 11.0 80 32-118 62-150 (427)
168 cd06589 GH31 The enzymes of gl 55.9 1.8E+02 0.0039 27.3 13.3 65 50-117 21-87 (265)
169 COG3280 TreY Maltooligosyl tre 55.2 33 0.00072 37.0 6.6 74 51-124 17-96 (889)
170 PRK12330 oxaloacetate decarbox 54.5 47 0.001 34.5 7.6 64 32-116 81-144 (499)
171 cd06591 GH31_xylosidase_XylS X 54.0 1.8E+02 0.0039 28.2 11.4 126 51-193 22-163 (319)
172 smart00636 Glyco_18 Glycosyl h 53.5 1.2E+02 0.0027 29.3 10.3 99 97-225 53-155 (334)
173 PF10566 Glyco_hydro_97: Glyco 52.9 44 0.00095 31.8 6.6 49 55-117 108-156 (273)
174 PRK09856 fructoselysine 3-epim 52.2 2E+02 0.0044 26.8 11.9 131 54-223 48-180 (275)
175 cd07944 DRE_TIM_HOA_like 4-hyd 52.0 31 0.00068 32.6 5.6 46 56-117 85-130 (266)
176 PRK12331 oxaloacetate decarbox 51.8 46 0.001 34.1 7.1 49 53-117 96-144 (448)
177 cd01299 Met_dep_hydrolase_A Me 51.5 74 0.0016 30.8 8.4 63 51-116 118-180 (342)
178 PRK14842 undecaprenyl pyrophos 51.3 26 0.00056 32.7 4.7 62 53-114 39-100 (241)
179 cd07948 DRE_TIM_HCS Saccharomy 51.2 30 0.00066 32.6 5.3 59 56-117 74-133 (262)
180 PF02679 ComA: (2R)-phospho-3- 50.8 36 0.00078 31.8 5.5 52 52-117 83-134 (244)
181 PRK09989 hypothetical protein; 50.8 36 0.00078 31.7 5.8 61 53-117 85-145 (258)
182 TIGR03581 EF_0839 conserved hy 50.5 35 0.00076 31.1 5.2 46 53-112 135-180 (236)
183 KOG1066 Glucosidase II catalyt 50.3 62 0.0013 34.8 7.6 39 147-195 477-516 (915)
184 PRK14841 undecaprenyl pyrophos 49.9 27 0.00058 32.4 4.6 62 53-114 34-95 (233)
185 smart00481 POLIIIAc DNA polyme 49.5 44 0.00096 23.9 4.9 47 53-116 15-61 (67)
186 PF10566 Glyco_hydro_97: Glyco 49.3 1E+02 0.0023 29.3 8.5 109 51-166 30-149 (273)
187 COG1501 Alpha-glucosidases, fa 49.1 2.5E+02 0.0053 31.1 12.4 158 51-228 278-466 (772)
188 PRK12399 tagatose 1,6-diphosph 48.8 36 0.00078 33.0 5.3 55 58-118 110-164 (324)
189 PF14883 GHL13: Hypothetical g 48.4 2.6E+02 0.0056 26.9 13.6 239 52-316 16-266 (294)
190 PTZ00333 triosephosphate isome 48.3 1.7E+02 0.0038 27.5 9.8 50 59-118 82-131 (255)
191 KOG2499 Beta-N-acetylhexosamin 48.1 54 0.0012 33.6 6.6 65 53-117 198-271 (542)
192 PRK12858 tagatose 1,6-diphosph 47.7 40 0.00088 33.2 5.7 55 56-116 109-163 (340)
193 cd06548 GH18_chitinase The GH1 47.6 2.4E+02 0.0052 27.3 11.2 100 96-224 70-181 (322)
194 PRK05692 hydroxymethylglutaryl 47.0 38 0.00083 32.4 5.4 60 56-117 82-141 (287)
195 TIGR00055 uppS undecaprenyl di 46.5 35 0.00077 31.5 4.8 58 53-114 30-91 (226)
196 KOG0471 Alpha-amylase [Carbohy 46.1 39 0.00084 35.6 5.6 66 52-117 39-109 (545)
197 cd07939 DRE_TIM_NifV Streptomy 46.0 37 0.00081 31.8 5.1 60 56-117 72-131 (259)
198 PRK14837 undecaprenyl pyrophos 45.9 37 0.00079 31.4 4.8 58 53-114 37-98 (230)
199 PRK14567 triosephosphate isome 45.7 2.2E+02 0.0048 26.8 10.0 50 59-118 78-127 (253)
200 COG3661 AguA Alpha-glucuronida 45.3 2.3E+02 0.0049 28.9 10.2 93 52-165 182-275 (684)
201 PRK14839 undecaprenyl pyrophos 45.3 38 0.00082 31.5 4.8 58 53-114 40-101 (239)
202 PRK00042 tpiA triosephosphate 45.2 1.9E+02 0.0042 27.1 9.6 50 59-118 79-128 (250)
203 TIGR03849 arch_ComA phosphosul 45.1 65 0.0014 29.9 6.3 52 52-117 70-121 (237)
204 PRK04161 tagatose 1,6-diphosph 44.6 46 0.001 32.4 5.4 57 56-118 110-166 (329)
205 PRK05434 phosphoglyceromutase; 44.5 1.5E+02 0.0031 31.1 9.4 77 28-117 108-184 (507)
206 PRK14840 undecaprenyl pyrophos 44.5 39 0.00084 31.7 4.8 59 53-114 53-114 (250)
207 cd02872 GH18_chitolectin_chito 44.3 2.6E+02 0.0056 27.4 11.0 104 96-225 56-160 (362)
208 PRK14831 undecaprenyl pyrophos 44.2 35 0.00077 32.0 4.5 62 53-114 51-112 (249)
209 cd02871 GH18_chitinase_D-like 43.8 3.1E+02 0.0066 26.5 11.6 49 96-166 60-108 (312)
210 PRK10240 undecaprenyl pyrophos 43.8 42 0.0009 31.1 4.8 62 53-114 24-85 (229)
211 COG3684 LacD Tagatose-1,6-bisp 43.8 72 0.0016 30.0 6.2 53 59-118 117-169 (306)
212 TIGR01232 lacD tagatose 1,6-di 43.7 49 0.0011 32.2 5.4 55 58-118 111-165 (325)
213 PRK08195 4-hyroxy-2-oxovalerat 43.6 64 0.0014 31.7 6.4 46 56-117 91-136 (337)
214 cd00311 TIM Triosephosphate is 43.6 2.8E+02 0.006 25.9 11.3 50 59-118 77-126 (242)
215 PRK10426 alpha-glucosidase; Pr 43.0 4.6E+02 0.01 28.3 15.7 154 52-223 220-408 (635)
216 PF14701 hDGE_amylase: glucano 42.9 79 0.0017 32.1 7.0 66 52-117 21-98 (423)
217 cd00475 CIS_IPPS Cis (Z)-Isopr 42.9 42 0.00092 30.8 4.7 60 52-114 30-92 (221)
218 PF13547 GTA_TIM: GTA TIM-barr 42.5 35 0.00076 32.4 4.1 15 302-316 206-220 (299)
219 COG2876 AroA 3-deoxy-D-arabino 42.5 1.2E+02 0.0026 28.7 7.5 61 51-117 57-117 (286)
220 cd06599 GH31_glycosidase_Aec37 41.6 3.2E+02 0.0069 26.4 11.0 124 52-191 28-170 (317)
221 TIGR03217 4OH_2_O_val_ald 4-hy 41.3 76 0.0016 31.2 6.5 46 56-117 90-135 (333)
222 TIGR02090 LEU1_arch isopropylm 40.1 48 0.001 32.9 5.0 62 55-118 73-134 (363)
223 PRK01060 endonuclease IV; Prov 39.7 2.1E+02 0.0047 26.7 9.3 51 54-112 13-63 (281)
224 PRK14833 undecaprenyl pyrophos 39.3 48 0.001 30.8 4.5 58 53-114 35-96 (233)
225 PRK14834 undecaprenyl pyrophos 39.1 60 0.0013 30.4 5.2 58 53-114 45-106 (249)
226 TIGR01307 pgm_bpd_ind 2,3-bisp 38.9 1.9E+02 0.0041 30.1 9.2 77 28-117 104-180 (501)
227 cd07945 DRE_TIM_CMS Leptospira 38.7 55 0.0012 31.3 5.0 61 56-118 77-137 (280)
228 PLN02692 alpha-galactosidase 38.7 3.5E+02 0.0076 27.4 10.7 81 31-118 54-143 (412)
229 PRK14040 oxaloacetate decarbox 38.5 96 0.0021 33.1 7.2 45 53-113 97-141 (593)
230 cd07943 DRE_TIM_HOA 4-hydroxy- 38.5 82 0.0018 29.6 6.1 46 56-117 88-133 (263)
231 TIGR02631 xylA_Arthro xylose i 38.3 71 0.0015 32.0 5.9 64 54-117 116-181 (382)
232 TIGR01108 oadA oxaloacetate de 37.9 1E+02 0.0022 32.8 7.2 49 52-116 90-138 (582)
233 PF13380 CoA_binding_2: CoA bi 37.6 1E+02 0.0022 25.0 5.8 43 51-113 64-106 (116)
234 PLN02808 alpha-galactosidase 37.5 4E+02 0.0086 26.8 10.9 81 31-118 30-119 (386)
235 PRK09282 pyruvate carboxylase 36.9 95 0.0021 33.1 6.8 50 52-117 95-144 (592)
236 COG1453 Predicted oxidoreducta 36.9 4.4E+02 0.0096 26.3 13.3 47 251-310 158-204 (391)
237 PF03644 Glyco_hydro_85: Glyco 36.6 78 0.0017 30.7 5.7 93 101-222 47-140 (311)
238 TIGR03234 OH-pyruv-isom hydrox 36.5 3.4E+02 0.0074 24.9 13.2 55 151-218 116-170 (254)
239 TIGR01210 conserved hypothetic 36.2 2.2E+02 0.0047 27.6 8.8 49 56-117 117-176 (313)
240 PF09370 TIM-br_sig_trns: TIM- 36.0 1.2E+02 0.0026 28.7 6.5 58 53-117 95-158 (268)
241 COG2108 Uncharacterized conser 36.0 79 0.0017 30.8 5.4 48 56-116 124-171 (353)
242 PRK14832 undecaprenyl pyrophos 35.9 62 0.0013 30.4 4.7 58 53-114 49-110 (253)
243 TIGR01235 pyruv_carbox pyruvat 35.4 1.1E+02 0.0024 35.4 7.5 64 33-117 610-673 (1143)
244 TIGR02660 nifV_homocitr homoci 35.3 59 0.0013 32.3 4.8 60 56-117 75-134 (365)
245 PRK14836 undecaprenyl pyrophos 35.0 48 0.001 31.2 3.8 62 53-114 45-106 (253)
246 COG0269 SgbH 3-hexulose-6-phos 35.0 1.4E+02 0.003 27.3 6.6 47 58-121 72-118 (217)
247 PLN02746 hydroxymethylglutaryl 34.9 72 0.0016 31.5 5.2 61 55-117 123-183 (347)
248 COG2875 CobM Precorrin-4 methy 34.4 1.5E+02 0.0032 27.5 6.7 91 9-114 9-108 (254)
249 COG2342 Predicted extracellula 34.4 2.3E+02 0.005 27.1 8.0 149 54-223 31-190 (300)
250 COG1306 Uncharacterized conser 34.3 93 0.002 29.9 5.5 65 51-117 75-145 (400)
251 PF04748 Polysacc_deac_2: Dive 34.0 92 0.002 28.4 5.5 70 33-115 89-181 (213)
252 TIGR03471 HpnJ hopanoid biosyn 34.0 1.1E+02 0.0024 31.4 6.8 57 56-117 287-344 (472)
253 PRK14829 undecaprenyl pyrophos 33.8 72 0.0016 29.8 4.8 58 53-114 45-106 (243)
254 PRK11858 aksA trans-homoaconit 33.3 77 0.0017 31.7 5.2 60 56-117 78-137 (378)
255 COG3525 Chb N-acetyl-beta-hexo 33.3 1.5E+02 0.0033 31.7 7.4 64 51-117 276-367 (732)
256 KOG2331 Predicted glycosylhydr 33.1 1.1E+02 0.0024 30.9 6.0 89 103-222 118-208 (526)
257 cd03174 DRE_TIM_metallolyase D 32.9 87 0.0019 29.1 5.3 60 56-117 77-136 (265)
258 PRK09989 hypothetical protein; 32.5 4E+02 0.0088 24.5 14.0 90 94-219 83-172 (258)
259 PLN02561 triosephosphate isome 32.5 4.3E+02 0.0093 24.8 12.2 50 59-118 81-130 (253)
260 COG0635 HemN Coproporphyrinoge 32.4 3.7E+02 0.0081 27.2 10.0 87 56-193 137-233 (416)
261 PRK14830 undecaprenyl pyrophos 32.1 78 0.0017 29.7 4.7 62 53-114 53-114 (251)
262 cd07941 DRE_TIM_LeuA3 Desulfob 31.7 91 0.002 29.5 5.3 58 57-116 82-139 (273)
263 PRK14827 undecaprenyl pyrophos 31.4 78 0.0017 30.5 4.7 58 53-114 98-159 (296)
264 PF00682 HMGL-like: HMGL-like 31.3 4E+02 0.0087 24.2 10.8 65 51-117 65-129 (237)
265 PF00121 TIM: Triosephosphate 31.1 1.7E+02 0.0037 27.3 6.8 50 59-118 77-126 (244)
266 COG1099 Predicted metal-depend 30.4 65 0.0014 29.7 3.7 57 54-118 12-72 (254)
267 PRK13210 putative L-xylulose 5 30.0 4.5E+02 0.0099 24.4 13.1 63 52-115 51-113 (284)
268 PRK14041 oxaloacetate decarbox 29.9 1.4E+02 0.0031 30.8 6.6 49 53-117 95-143 (467)
269 TIGR02171 Fb_sc_TIGR02171 Fibr 29.7 4.8E+02 0.01 29.3 10.6 26 92-117 804-829 (912)
270 PF13547 GTA_TIM: GTA TIM-barr 29.6 2.9E+02 0.0063 26.4 7.9 80 180-271 19-109 (299)
271 PTZ00349 dehydrodolichyl dipho 29.4 88 0.0019 30.4 4.6 58 53-114 50-114 (322)
272 cd07938 DRE_TIM_HMGL 3-hydroxy 29.3 1.1E+02 0.0024 29.0 5.4 60 56-117 76-135 (274)
273 PF10035 DUF2179: Uncharacteri 29.2 57 0.0012 22.4 2.6 20 205-224 29-48 (55)
274 PF01255 Prenyltransf: Putativ 28.9 70 0.0015 29.4 3.8 58 53-114 25-88 (223)
275 PRK05628 coproporphyrinogen II 28.1 1.2E+02 0.0026 30.1 5.7 58 56-117 108-166 (375)
276 cd00598 GH18_chitinase-like Th 27.4 4.3E+02 0.0092 23.2 11.4 93 100-224 53-147 (210)
277 TIGR00539 hemN_rel putative ox 27.4 1.1E+02 0.0025 30.1 5.3 58 56-117 100-158 (360)
278 PRK09249 coproporphyrinogen II 27.3 1.6E+02 0.0034 30.2 6.4 58 56-117 151-209 (453)
279 PRK07379 coproporphyrinogen II 27.2 1.4E+02 0.003 30.1 5.9 49 56-117 115-173 (400)
280 COG3142 CutC Uncharacterized p 27.2 1.6E+02 0.0035 27.2 5.7 66 32-119 58-123 (241)
281 PRK06294 coproporphyrinogen II 26.9 1.4E+02 0.003 29.7 5.8 49 56-117 103-161 (370)
282 KOG1065 Maltase glucoamylase a 26.7 3.7E+02 0.008 29.7 9.1 127 51-193 309-452 (805)
283 COG1082 IolE Sugar phosphate i 26.5 3.1E+02 0.0068 25.2 8.0 66 52-119 83-149 (274)
284 cd07947 DRE_TIM_Re_CS Clostrid 26.5 1.2E+02 0.0025 29.0 5.0 59 56-117 77-136 (279)
285 cd07940 DRE_TIM_IPMS 2-isoprop 26.5 1.1E+02 0.0023 28.9 4.7 58 56-116 72-134 (268)
286 PRK09058 coproporphyrinogen II 26.2 1.3E+02 0.0029 30.7 5.7 49 56-117 163-221 (449)
287 PRK00366 ispG 4-hydroxy-3-meth 26.2 1.1E+02 0.0025 30.1 4.8 76 62-166 97-172 (360)
288 COG2852 Very-short-patch-repai 26.0 1.3E+02 0.0028 25.0 4.3 28 61-105 89-116 (129)
289 PRK09261 phospho-2-dehydro-3-d 26.0 4.1E+02 0.0088 26.3 8.6 82 28-118 51-146 (349)
290 PRK09250 fructose-bisphosphate 25.6 4.6E+02 0.01 25.9 8.9 53 53-115 146-198 (348)
291 TIGR01211 ELP3 histone acetylt 25.5 1.7E+02 0.0038 30.6 6.4 49 56-117 206-263 (522)
292 smart00518 AP2Ec AP endonuclea 25.2 2.5E+02 0.0053 26.2 7.0 52 55-114 12-63 (273)
293 PRK05904 coproporphyrinogen II 25.1 1.2E+02 0.0027 29.9 5.0 58 56-117 103-161 (353)
294 PRK13125 trpA tryptophan synth 25.0 1.7E+02 0.0037 27.1 5.7 49 55-118 90-138 (244)
295 PRK08227 autoinducer 2 aldolas 24.8 1.5E+02 0.0033 28.0 5.3 52 53-114 94-145 (264)
296 COG2861 Uncharacterized protei 24.7 2.4E+02 0.0051 26.4 6.3 76 31-114 119-212 (250)
297 TIGR03128 RuMP_HxlA 3-hexulose 24.5 2.4E+02 0.0051 25.1 6.5 44 58-118 68-111 (206)
298 PRK13347 coproporphyrinogen II 24.3 1.4E+02 0.0031 30.5 5.5 58 56-117 152-210 (453)
299 PRK01060 endonuclease IV; Prov 24.3 2.6E+02 0.0057 26.1 7.0 58 52-117 88-147 (281)
300 PRK08446 coproporphyrinogen II 24.1 1.3E+02 0.0028 29.7 5.0 58 56-117 98-156 (350)
301 PRK10658 putative alpha-glucos 24.1 2.6E+02 0.0056 30.4 7.5 109 52-165 282-406 (665)
302 COG2945 Predicted hydrolase of 24.0 2.2E+02 0.0048 25.7 5.8 51 52-108 46-98 (210)
303 PLN02429 triosephosphate isome 23.9 6.8E+02 0.015 24.4 10.1 21 98-118 165-189 (315)
304 PRK08207 coproporphyrinogen II 23.8 1.6E+02 0.0035 30.5 5.8 58 56-117 269-327 (488)
305 TIGR00419 tim triosephosphate 23.7 2.1E+02 0.0046 25.9 5.9 44 59-116 74-117 (205)
306 smart00518 AP2Ec AP endonuclea 23.6 2.8E+02 0.006 25.8 7.0 53 53-116 84-140 (273)
307 cd04724 Tryptophan_synthase_al 23.1 2E+02 0.0044 26.6 5.8 45 55-117 93-137 (242)
308 PRK05660 HemN family oxidoredu 23.1 1.9E+02 0.0042 28.8 6.0 58 56-117 107-165 (378)
309 PTZ00445 p36-lilke protein; Pr 23.1 2.2E+02 0.0049 26.0 5.8 65 51-118 27-100 (219)
310 TIGR02026 BchE magnesium-proto 23.0 1.9E+02 0.0041 30.0 6.2 58 56-117 287-344 (497)
311 PF05706 CDKN3: Cyclin-depende 22.9 1.5E+02 0.0033 26.0 4.5 46 52-113 57-104 (168)
312 PRK12822 phospho-2-dehydro-3-d 22.1 5.6E+02 0.012 25.3 8.7 83 28-119 51-147 (356)
313 CHL00200 trpA tryptophan synth 22.1 2.2E+02 0.0047 27.0 5.8 45 55-117 108-152 (263)
314 TIGR03586 PseI pseudaminic aci 22.1 3E+02 0.0065 27.0 6.9 69 50-118 14-99 (327)
315 PRK14453 chloramphenicol/florf 21.8 3.6E+02 0.0078 26.6 7.5 61 51-116 262-326 (347)
316 PF14386 DUF4417: Domain of un 21.7 1.7E+02 0.0036 26.5 4.8 63 98-167 99-166 (200)
317 PRK09767 hypothetical protein; 21.6 1.2E+02 0.0026 24.9 3.4 15 60-74 78-92 (117)
318 PF13199 Glyco_hydro_66: Glyco 21.6 2.2E+02 0.0048 30.1 6.3 64 51-116 116-190 (559)
319 COG0020 UppS Undecaprenyl pyro 21.5 1.4E+02 0.0031 27.9 4.4 64 52-115 46-109 (245)
320 PRK08208 coproporphyrinogen II 21.4 2E+02 0.0043 29.2 5.9 48 56-116 141-198 (430)
321 PF00762 Ferrochelatase: Ferro 21.2 6.9E+02 0.015 24.2 9.3 64 144-215 155-219 (316)
322 KOG0259 Tyrosine aminotransfer 21.1 2E+02 0.0044 28.8 5.4 69 53-129 183-252 (447)
323 PRK14581 hmsF outer membrane N 21.1 1.1E+03 0.024 25.7 11.9 238 53-314 334-612 (672)
324 TIGR00538 hemN oxygen-independ 21.0 2.2E+02 0.0048 29.1 6.1 58 56-117 151-209 (455)
325 COG0696 GpmI Phosphoglyceromut 21.0 6E+02 0.013 26.3 8.8 77 28-117 107-183 (509)
326 COG1809 (2R)-phospho-3-sulfola 20.9 2.4E+02 0.0051 26.0 5.4 51 52-116 89-139 (258)
327 COG3623 SgaU Putative L-xylulo 20.9 2.5E+02 0.0055 26.1 5.6 61 53-117 96-156 (287)
328 PF00704 Glyco_hydro_18: Glyco 20.6 5.4E+02 0.012 24.6 8.6 102 92-224 58-164 (343)
329 PRK08599 coproporphyrinogen II 20.6 2.1E+02 0.0046 28.4 5.8 58 56-117 100-158 (377)
330 COG0469 PykF Pyruvate kinase [ 20.6 2.8E+02 0.006 28.7 6.5 49 56-116 20-68 (477)
331 TIGR00433 bioB biotin syntheta 20.6 2.5E+02 0.0055 26.5 6.2 56 56-116 123-178 (296)
332 PLN02591 tryptophan synthase 20.5 3.5E+02 0.0075 25.4 6.8 45 55-117 95-139 (250)
333 TIGR00612 ispG_gcpE 1-hydroxy- 20.5 1.7E+02 0.0036 28.8 4.7 75 62-166 89-163 (346)
334 PRK13111 trpA tryptophan synth 20.3 3.1E+02 0.0068 25.8 6.5 22 95-116 128-149 (258)
335 COG3622 Hfi Hydroxypyruvate is 20.3 3.5E+02 0.0076 25.3 6.5 64 52-119 84-147 (260)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=2.7e-29 Score=239.99 Aligned_cols=265 Identities=27% Similarity=0.446 Sum_probs=184.4
Q ss_pred ECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccc-cCCC-CCChHHHHHHHHHHHH
Q 014902 27 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ-TSPS-VYDEEVFKALDFVISE 104 (416)
Q Consensus 27 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~-~~~g-~~~~~~l~~lD~~l~~ 104 (416)
.+|+++.++|+|.+|... ...+++|+.|+++|+|+||+++. |..++ +.++ .+++..++.||++|++
T Consensus 3 ~~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~ 70 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDA 70 (281)
T ss_dssp TTSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHH
T ss_pred CCCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHH
Confidence 479999999999986532 15689999999999999999764 44454 4554 5899999999999999
Q ss_pred HHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEE
Q 014902 105 AKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW 184 (416)
Q Consensus 105 a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~w 184 (416)
|+++||+|||++|.. +.|.. ....+...+...+.+.++++.+++| |+++|.|++|
T Consensus 71 a~~~gi~vild~h~~----------~~w~~-------~~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~ 125 (281)
T PF00150_consen 71 AQAYGIYVILDLHNA----------PGWAN-------GGDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGW 125 (281)
T ss_dssp HHHTT-EEEEEEEES----------TTCSS-------STSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEE
T ss_pred HHhCCCeEEEEeccC----------ccccc-------cccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEE
Confidence 999999999999974 11210 0111233455788899999999999 9999999999
Q ss_pred EeccCCCCCCCC------ChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhh-hC
Q 014902 185 ELMNEPRCTSDP------SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQ 257 (416)
Q Consensus 185 el~NEp~~~~~~------~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~-~~ 257 (416)
||+|||...... ....+.+|+++++++||+++|+++|+++..++... +. ...... ..
T Consensus 126 el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~---------~~-------~~~~~~P~~ 189 (281)
T PF00150_consen 126 ELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGAD---------PD-------GAAADNPND 189 (281)
T ss_dssp ESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTB---------HH-------HHHHHSTTT
T ss_pred EecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccc---------cc-------hhhhcCccc
Confidence 999999986432 12568899999999999999999999986433211 00 000000 11
Q ss_pred CCCCcEEEEeecCCCcCCCCC----hhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCCCCCChhHHHHHHHHHHH
Q 014902 258 TLGVDFASVHIYADSWISQTI----SDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYK 333 (416)
Q Consensus 258 ~~~iD~~s~H~Y~~~w~~~~~----~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~ 333 (416)
....+++++|.|+. +..... ...........+..+...+.+ .++||+|+|||....+.. ...++...+++
T Consensus 190 ~~~~~~~~~H~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~ 263 (281)
T PF00150_consen 190 ADNNDVYSFHFYDP-YDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLD 263 (281)
T ss_dssp TTTSEEEEEEEETT-TCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHH
T ss_pred ccCceeEEeeEeCC-CCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHH
Confidence 35678999999985 321110 011123334556666666666 799999999999754311 22333333344
Q ss_pred HHHHhhhcCCccccccccccCCC
Q 014902 334 TLLNSTKKGGSGAGSLLWQLFPD 356 (416)
Q Consensus 334 ~~~~~~~~~~~~~G~~~W~~~~~ 356 (416)
.+.+ . ..|+++|+|..+
T Consensus 264 ~~~~----~--~~g~~~W~~~~~ 280 (281)
T PF00150_consen 264 YLEQ----N--GIGWIYWSWKPN 280 (281)
T ss_dssp HHHH----T--TCEEEECEESSS
T ss_pred HHHH----C--CCeEEEEecCCC
Confidence 3322 2 689999999865
No 2
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=254.00 Aligned_cols=310 Identities=20% Similarity=0.329 Sum_probs=223.6
Q ss_pred EEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCCh-HHHHHHHHHHH
Q 014902 25 FVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDE-EVFKALDFVIS 103 (416)
Q Consensus 25 f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~-~~l~~lD~~l~ 103 (416)
|.++++.+.+.+.+.+|..+. .+.++++|+.++.+|++++|+|.. |++- .....|..+. ..+.+++.+++
T Consensus 4 F~Lg~n~wprIanikmw~~~~------~~ei~~dle~a~~vg~k~lR~fiL-DgEd--c~d~~G~~na~s~~~y~~~fla 74 (587)
T COG3934 4 FALGLNRWPRIANIKMWPAIG------NREIKADLEPAGFVGVKDLRLFIL-DGED--CRDKEGYRNAGSNVWYAAWFLA 74 (587)
T ss_pred EEeccccchhhhhhhHHHHhh------hhhhhcccccccCccceeEEEEEe-cCcc--hhhhhceecccccHHHHHHHhh
Confidence 556666666666555554432 367899999999999999999955 3321 1112344444 34999999999
Q ss_pred HHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeE
Q 014902 104 EAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFA 183 (416)
Q Consensus 104 ~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~ 183 (416)
.|..++|+++++|.+.|.+.||++++..|++ + +++++++-++..+.-+++|++.+|+- ||.+|+|++
T Consensus 75 ~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag--~---~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~g 141 (587)
T COG3934 75 PAGYLDLKVLITLIVGLKHMGGTNWRIPWAG--E---QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAG 141 (587)
T ss_pred hcccCcceEEEEEeecccccCcceeEeecCC--C---CCccccccchhhcccHHHHHHHHhhh--------hccChHHHH
Confidence 9999999999999999999999999999973 2 35678889999999999999999998 999999999
Q ss_pred EEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcE
Q 014902 184 WELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDF 263 (416)
Q Consensus 184 wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~ 263 (416)
|++.|||.+....++..+..|..+|+++||.+||+|+|++|.+++.- + ..-| | .....+||
T Consensus 142 w~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~---~---~~~p--y-----------N~r~~vDy 202 (587)
T COG3934 142 WALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASPW---P---QYAP--Y-----------NARFYVDY 202 (587)
T ss_pred HHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCcc---c---ccCC--c-----------ccceeecc
Confidence 99999999977778899999999999999999999999999866420 0 0011 1 12247899
Q ss_pred EEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCccCCCCCChhHHHHHHHHHHHHHHHhhhcC
Q 014902 264 ASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLR-MPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKG 342 (416)
Q Consensus 264 ~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~-kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~ 342 (416)
.+.|.|| +|.... ..+....|...+++..+. .| +|++++|||.+..... +..... ..+...++..
T Consensus 203 a~~hLY~-hyd~sl----~~r~s~~yg~~~l~i~~~-~g~~pV~leefGfsta~g~--e~s~ay--fiw~~lal~~---- 268 (587)
T COG3934 203 AANHLYR-HYDTSL----VSRVSTVYGKPYLDIPTI-MGWQPVNLEEFGFSTAFGQ--ENSPAY--FIWIRLALDT---- 268 (587)
T ss_pred ccchhhh-hccCCh----hheeeeeecchhhccchh-cccceeeccccCCcccccc--cccchh--hhhhhhHHhh----
Confidence 9999998 454321 123334566667777776 67 9999999999887421 111111 1122222221
Q ss_pred CccccccccccCCCCC---------CCCCCCceEEeCCCcCH--HHHHHHHHHHHHhcc
Q 014902 343 GSGAGSLLWQLFPDGT---------DYMNDGYAIVLSKSPST--SNIISLHSTRIATFN 390 (416)
Q Consensus 343 ~~~~G~~~W~~~~~g~---------~~~~dg~~i~~~~~~~~--~~~~~~~~~~~~~~~ 390 (416)
+ +.|+++|+|.+.+. .++.++|+|+..|.+.. .+.+...+...+.|.
T Consensus 269 g-gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradgpek~~a~~~~~fsn~~kdI~ 326 (587)
T COG3934 269 G-GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADGPEKIDAMTLHIFSNNWKDIS 326 (587)
T ss_pred c-CCceEEEEecCCccCCCCCCCccccccceeeeecCCCchhhhHHHHHHhccccceee
Confidence 2 78999999987642 23446999998776532 234445555555554
No 3
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.95 E-value=9.4e-27 Score=236.37 Aligned_cols=309 Identities=16% Similarity=0.229 Sum_probs=218.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 128 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 128 (416)
..+++++|+++||++|+|+.|+ ..+|++++|. ++.+|+++++.++++|+++.++||.++|||+ ||+.
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRf----SIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H~dl------ 139 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRM----SIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-HFDC------ 139 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEE----ecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-ccCC------
Confidence 3589999999999999999999 3579999987 4568999999999999999999999999999 6774
Q ss_pred HHHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC----------CC
Q 014902 129 YVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD----------PS 197 (416)
Q Consensus 129 y~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~----------~~ 197 (416)
|.|.... | .|.++++++.|.+|++.+++| |+| .|-.|.++|||++... +.
T Consensus 140 -P~~L~~~~G--------GW~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~~~~~~g~~~~~ 200 (478)
T PRK09593 140 -PMHLIEEYG--------GWRNRKMVGFYERLCRTLFTR--------YKG--LVKYWLTFNEINMILHAPFMGAGLYFEE 200 (478)
T ss_pred -CHHHHhhcC--------CCCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEeecchhhhhcccccccCcccCC
Confidence 5666532 4 589999999999999999999 999 7899999999985421 11
Q ss_pred h----h-HHHHH------HHHHHHHhhhcCCCcEEEecccc--ccCCCC-CCC------------cCCCcC---cccc--
Q 014902 198 G----D-TLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPSA-PDR------------AKFNPN---SYAT-- 246 (416)
Q Consensus 198 ~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~~-~~~------------~~~np~---~~~~-- 246 (416)
+ . .++.- ...+..++|+..|+..|++.... +++.+. ++. ...+|. .|..
T Consensus 201 g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~ 280 (478)
T PRK09593 201 GENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYA 280 (478)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHH
Confidence 1 0 11111 13446778888887777654322 222211 100 000110 0100
Q ss_pred -----cccc--hhh----hhhCCCCCcEEEEeecCCCcCCC-----C----C-------h---hH--HHHHHHHHHHHHH
Q 014902 247 -----QVGT--DFI----RNHQTLGVDFASVHIYADSWISQ-----T----I-------S---DA--HLQFTKSWMEAHI 294 (416)
Q Consensus 247 -----~~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~-----~----~-------~---~~--~~~~~~~~i~~~~ 294 (416)
..|. .+. .......+||+++++|....... . . + .+ ..+..+..|+..+
T Consensus 281 ~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l 360 (478)
T PRK09593 281 KKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITL 360 (478)
T ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHH
Confidence 0000 000 00112567999999995432210 0 0 0 00 1134456677666
Q ss_pred HHHHHhCCCcEEEEecCCccCC----CC-CChhHHHHHHHHHHHHHHHhhh-cCCccccccccccCCCCCCCCCCC----
Q 014902 295 EDAEKYLRMPVLFTEFGVSAKD----TG-YNTSFRDTLISSVYKTLLNSTK-KGGSGAGSLLWQLFPDGTDYMNDG---- 364 (416)
Q Consensus 295 ~~a~~~~~kPv~i~EfG~~~~~----~g-~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~~~dg---- 364 (416)
...++++++||+|+|+|+...+ .+ ..++.|..|++.++.++.++++ +|.++.|++.|++.|+ .+|..|
T Consensus 361 ~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn--~EW~~G~y~~ 438 (478)
T PRK09593 361 NTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDL--VSAGTGEMKK 438 (478)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHh--hcccCCCccC
Confidence 6665558899999999998543 12 3577899999999999999995 8999999999999999 888766
Q ss_pred -ceEEeCCCc-----CHHHHHHHHHHHHHhccc
Q 014902 365 -YAIVLSKSP-----STSNIISLHSTRIATFNS 391 (416)
Q Consensus 365 -~~i~~~~~~-----~~~~~~~~~~~~~~~~~~ 391 (416)
||++++|.+ +..|++|+++..++.+..
T Consensus 439 RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 439 RYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred eeceEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 999998865 468999999999998763
No 4
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.95 E-value=5.8e-26 Score=239.24 Aligned_cols=290 Identities=17% Similarity=0.260 Sum_probs=192.5
Q ss_pred CCCc--EEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCC
Q 014902 14 DWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD 91 (416)
Q Consensus 14 ~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~ 91 (416)
.-|| |+++++.|.+||+|++++|+|.|........+.+.+.+.+||+.||++|+|+||+... ..+
T Consensus 272 ~~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~-------------p~~ 338 (604)
T PRK10150 272 RFGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHY-------------PYS 338 (604)
T ss_pred eeEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccC-------------CCC
Confidence 4466 7888999999999999999998754433323456788999999999999999999321 123
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcC---cCCChhhHHHhhhhcCCC-CCCCcCcCCCHHHHHHHHHHHHHHHhcc
Q 014902 92 EEVFKALDFVISEAKKYKIRLILSLTNNWD---AYGGKAQYVKWGKAAGLN-LTSDDEFFSHTTLKSYYKAHVKTVLNRV 167 (416)
Q Consensus 92 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~---~~gg~~~y~~w~~~~G~~-~~~~~~~~~~~~~~~~~~~~v~~~v~R~ 167 (416)
+ +++++|++.||.|+-.+.. |. ..+.. + .+ +.. ...-.....+|+..+++++.++.+|+|
T Consensus 339 ~-------~~~~~cD~~GllV~~E~p~-~~~~~~~~~~--~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r- 402 (604)
T PRK10150 339 E-------EMLDLADRHGIVVIDETPA-VGLNLSFGAG--L-EA----GNKPKETYSEEAVNGETQQAHLQAIRELIAR- 402 (604)
T ss_pred H-------HHHHHHHhcCcEEEEeccc-cccccccccc--c-cc----cccccccccccccchhHHHHHHHHHHHHHHh-
Confidence 2 4578999999999877632 11 00100 0 00 000 000001123577889999999999999
Q ss_pred cccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCccccc
Q 014902 168 NTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQ 247 (416)
Q Consensus 168 N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~ 247 (416)
++|||+|++|.++||+.... +....++++|.+.+|++||++||+.+...+. ++.
T Consensus 403 -------~~NHPSIi~Ws~gNE~~~~~----~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~----------~~~----- 456 (604)
T PRK10150 403 -------DKNHPSVVMWSIANEPASRE----QGAREYFAPLAELTRKLDPTRPVTCVNVMFA----------TPD----- 456 (604)
T ss_pred -------ccCCceEEEEeeccCCCccc----hhHHHHHHHHHHHHHhhCCCCceEEEecccC----------Ccc-----
Confidence 99999999999999987532 3467899999999999999999998752110 010
Q ss_pred ccchhhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCC-------CCCC
Q 014902 248 VGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD-------TGYN 320 (416)
Q Consensus 248 ~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~-------~g~~ 320 (416)
. ....+.+|++++|.|+. |...... ......++...+....+..+||++++|||+.+.. ..++
T Consensus 457 --~----~~~~~~~Dv~~~N~Y~~-wy~~~~~---~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~h~~~~~~~~ 526 (604)
T PRK10150 457 --T----DTVSDLVDVLCLNRYYG-WYVDSGD---LETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGLHSMYDDMWS 526 (604)
T ss_pred --c----ccccCcccEEEEcccce-ecCCCCC---HHHHHHHHHHHHHHHHHhcCCCEEEEccCCccccccccCCCCCCC
Confidence 0 01235689999999987 6532211 1111222332222222224899999999965421 1247
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCccccccccccCCC----CCC-CCCCCceEEeCCC
Q 014902 321 TSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD----GTD-YMNDGYAIVLSKS 372 (416)
Q Consensus 321 ~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~----g~~-~~~dg~~i~~~~~ 372 (416)
++.+..+++..+..+.+ ...++|.++|++.|. |.. .-++..|++..+.
T Consensus 527 ee~q~~~~~~~~~~~~~----~p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr 579 (604)
T PRK10150 527 EEYQCAFLDMYHRVFDR----VPAVVGEQVWNFADFATSQGILRVGGNKKGIFTRDR 579 (604)
T ss_pred HHHHHHHHHHHHHHHhc----CCceEEEEEEeeeccCCCCCCcccCCCcceeEcCCC
Confidence 88888888877665443 356999999999983 221 1235678886553
No 5
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.95 E-value=2.6e-26 Score=232.99 Aligned_cols=309 Identities=15% Similarity=0.166 Sum_probs=216.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 128 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 128 (416)
..+++++|+++||++|+|+.|+ ..+|+++.|. .+.+|+++++.++++|+++.++||.++|||+ ||+.
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRf----SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H~dl------ 133 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRT----SIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-HFEM------ 133 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEe----ccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-CCCC------
Confidence 3578999999999999999999 3579999987 3458999999999999999999999999999 6774
Q ss_pred HHHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC------------
Q 014902 129 YVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD------------ 195 (416)
Q Consensus 129 y~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~------------ 195 (416)
|.|.... | .|.++++++.|.+|++.++++ |+| .|--|.++|||++...
T Consensus 134 -P~~L~~~yG--------GW~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~~~~~~g 194 (476)
T PRK09589 134 -PYHLVTEYG--------GWRNRKLIDFFVRFAEVVFTR--------YKD--KVKYWMTFNEINNQANFSEDFAPFTNSG 194 (476)
T ss_pred -CHHHHHhcC--------CcCChHHHHHHHHHHHHHHHH--------hcC--CCCEEEEecchhhhhccccccCCccccc
Confidence 5666543 4 589999999999999999999 999 7889999999985310
Q ss_pred ---CCh----h-HHHHH------HHHHHHHhhhcCCCcEEEecc--ccccCCCC-CCC------------cCCCcC---c
Q 014902 196 ---PSG----D-TLQSW------IQEMAVYVKSIDAKHLVEIGL--EGFYGPSA-PDR------------AKFNPN---S 243 (416)
Q Consensus 196 ---~~~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~--~g~~~~~~-~~~------------~~~np~---~ 243 (416)
+.+ . .++.- ..++.+++|+..|+..|++.. ..+++.+. ++. ...+|. .
T Consensus 195 ~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~ 274 (476)
T PRK09589 195 ILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGY 274 (476)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCC
Confidence 111 0 11111 123467788888876665432 12233211 100 000110 0
Q ss_pred ccc-------cccc--hhh----hhhCCCCCcEEEEeecCCCcCCC----C------------Ch--h-H--HHHHHHHH
Q 014902 244 YAT-------QVGT--DFI----RNHQTLGVDFASVHIYADSWISQ----T------------IS--D-A--HLQFTKSW 289 (416)
Q Consensus 244 ~~~-------~~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~----~------------~~--~-~--~~~~~~~~ 289 (416)
|.. ..+. .+. .......+||+++++|....... . ++ + + ..+..+..
T Consensus 275 YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~G 354 (476)
T PRK09589 275 YPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAG 354 (476)
T ss_pred CcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHH
Confidence 100 0000 000 00113567999999995432210 0 00 0 0 11344566
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCccCCC----C-CChhHHHHHHHHHHHHHHHhh-hcCCccccccccccCCCCCCCCCC
Q 014902 290 MEAHIEDAEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNST-KKGGSGAGSLLWQLFPDGTDYMND 363 (416)
Q Consensus 290 i~~~~~~a~~~~~kPv~i~EfG~~~~~~----g-~~~~~r~~~~~~~~~~~~~~~-~~~~~~~G~~~W~~~~~g~~~~~d 363 (416)
|+..+...++++++||+|+|.|+...+. + ..++.|..|++.++.++.+++ .+|.++.|++.|++.|+ .+|..
T Consensus 355 l~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn--~Ew~~ 432 (476)
T PRK09589 355 LRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDL--VSAGT 432 (476)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccc--ccccC
Confidence 7777766666689999999999985431 2 357789999999999999998 78999999999999999 77755
Q ss_pred -----CceEEeCCCc-----CHHHHHHHHHHHHHhccc
Q 014902 364 -----GYAIVLSKSP-----STSNIISLHSTRIATFNS 391 (416)
Q Consensus 364 -----g~~i~~~~~~-----~~~~~~~~~~~~~~~~~~ 391 (416)
+||++++|.. +..|++|+++..++.+-.
T Consensus 433 G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 433 GEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIA 470 (476)
T ss_pred CccccceeeEEEcCCCCCCcccccccccHHHHHHHHHH
Confidence 4899998765 458999999999998753
No 6
>PLN02998 beta-glucosidase
Probab=99.95 E-value=1.3e-26 Score=235.56 Aligned_cols=310 Identities=16% Similarity=0.180 Sum_probs=216.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
..+++++|+++||++|+|+.|+ ..+|++++|. .|.+|+++++.++++|+++.++||.++|||+ ||+.
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRf----SIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H~dl------- 147 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRF----SISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-HFDL------- 147 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEe----eccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-CCCC-------
Confidence 3579999999999999999999 3579999986 5679999999999999999999999999999 6774
Q ss_pred HHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC--------Chh-
Q 014902 130 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP--------SGD- 199 (416)
Q Consensus 130 ~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~--------~~~- 199 (416)
|.|.... | .|.++++++.|.+|++.+++| |+| .|-.|.+.|||++.... .+.
T Consensus 148 P~~L~~~yG--------GW~n~~~v~~F~~YA~~~~~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 209 (497)
T PLN02998 148 PQALEDEYG--------GWLSQEIVRDFTAYADTCFKE--------FGD--RVSHWTTINEVNVFALGGYDQGITPPARC 209 (497)
T ss_pred CHHHHHhhC--------CcCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEccCcchhhhcchhhcccCCCcc
Confidence 5666543 4 589999999999999999999 999 79999999999965321 110
Q ss_pred ----------------HHHHH------HHHHHHHhhhc---CCCcEEEeccc--cccCCCC-CCC-------------cC
Q 014902 200 ----------------TLQSW------IQEMAVYVKSI---DAKHLVEIGLE--GFYGPSA-PDR-------------AK 238 (416)
Q Consensus 200 ----------------~~~~w------~~~~~~~Ir~~---dp~~lV~~g~~--g~~~~~~-~~~-------------~~ 238 (416)
.++.- ..++...+|+. +++..|++... .+++.+. +.. ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f 289 (497)
T PLN02998 210 SPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWI 289 (497)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhh
Confidence 11111 12335667765 66666655432 2222211 100 00
Q ss_pred CCcC---ccccc----cc-c--hh---hhhhCCCCCcEEEEeecCCCcCCC---C--C--h---------------h---
Q 014902 239 FNPN---SYATQ----VG-T--DF---IRNHQTLGVDFASVHIYADSWISQ---T--I--S---------------D--- 280 (416)
Q Consensus 239 ~np~---~~~~~----~g-~--d~---~~~~~~~~iD~~s~H~Y~~~w~~~---~--~--~---------------~--- 280 (416)
.+|. .|... .+ . .+ ........+||+++++|....... . . . .
T Consensus 290 ~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (497)
T PLN02998 290 LHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIE 369 (497)
T ss_pred hhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCC
Confidence 0110 01000 00 0 00 001123467999999994432210 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCccCCCC-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCC
Q 014902 281 AHLQFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 358 (416)
Q Consensus 281 ~~~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 358 (416)
...+..+..|+..+...++++++ ||+|+|+|+...+.+ ..++.|..|++.++.++.+++.+|.++.|++.|++.|+
T Consensus 370 ~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~Dn-- 447 (497)
T PLN02998 370 NEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDV-- 447 (497)
T ss_pred CCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--
Confidence 01123455566666666655788 699999999765322 46788999999999999999999999999999999999
Q ss_pred CCCCC----CceEEeCCCc--CHHHHHHHHHHHHHhcccC
Q 014902 359 DYMND----GYAIVLSKSP--STSNIISLHSTRIATFNSL 392 (416)
Q Consensus 359 ~~~~d----g~~i~~~~~~--~~~~~~~~~~~~~~~~~~~ 392 (416)
.+|.. +||++++|.. +..|++|+++..++.+-..
T Consensus 448 fEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 448 FELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred hchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 77754 7899998865 4589999999999987654
No 7
>TIGR03356 BGL beta-galactosidase.
Probab=99.95 E-value=1.7e-26 Score=232.22 Aligned_cols=301 Identities=15% Similarity=0.197 Sum_probs=209.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
.+++++||+.|+++|+|++|+ ...|++++|. +|.+|+++++.+|.+|++|.++||++||||+ ||+. |
T Consensus 53 y~~y~eDi~l~~~~G~~~~R~----si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-Hfd~-------P 120 (427)
T TIGR03356 53 YHRYEEDVALMKELGVDAYRF----SIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-HWDL-------P 120 (427)
T ss_pred HHhHHHHHHHHHHcCCCeEEc----ccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-cCCc-------c
Confidence 578999999999999999999 3579999998 6889999999999999999999999999998 4553 5
Q ss_pred HhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC--------CC----h
Q 014902 131 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PS----G 198 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~--------~~----~ 198 (416)
.|....| .|.+++..+.|.+|++.+++| |++ .|-.|++.|||+.... +. .
T Consensus 121 ~~l~~~g--------Gw~~~~~~~~f~~ya~~~~~~--------~~d--~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 121 QALEDRG--------GWLNRDTAEWFAEYAAVVAER--------LGD--RVKHWITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred HHHHhcC--------CCCChHHHHHHHHHHHHHHHH--------hCC--cCCEEEEecCcceecccchhhccCCCCCccH
Confidence 5654333 588999999999999999999 999 6788999999985421 11 0
Q ss_pred h-HHH------HHHHHHHHHhhhcCCCcEEEeccc--cccCCCC-CCC-------------cCCCcC---cccc----cc
Q 014902 199 D-TLQ------SWIQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDR-------------AKFNPN---SYAT----QV 248 (416)
Q Consensus 199 ~-~~~------~w~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~~-~~~-------------~~~np~---~~~~----~~ 248 (416)
. .++ .-..++.+++|+..|+..|++... .+++.+. +.. ...+|- .|.. ..
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l 262 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYL 262 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHh
Confidence 1 111 112345677888888877765432 2222211 100 000110 0100 00
Q ss_pred cc--hh---hhhhCCCCCcEEEEeecCCCcCCC------------CC-hhH--HHHHHHHHHHHHHHHHHHhCCC-cEEE
Q 014902 249 GT--DF---IRNHQTLGVDFASVHIYADSWISQ------------TI-SDA--HLQFTKSWMEAHIEDAEKYLRM-PVLF 307 (416)
Q Consensus 249 g~--d~---~~~~~~~~iD~~s~H~Y~~~w~~~------------~~-~~~--~~~~~~~~i~~~~~~a~~~~~k-Pv~i 307 (416)
+. .+ ........+||+++++|....... .. ..+ ..+..+..|+..+....+++++ ||+|
T Consensus 263 ~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~I 342 (427)
T TIGR03356 263 GDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIYI 342 (427)
T ss_pred ccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEEE
Confidence 00 00 000113467999999996432110 00 000 0133355577767666666887 7999
Q ss_pred EecCCccCC---CC-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCCC----CceEEeCCCcCHHHHH
Q 014902 308 TEFGVSAKD---TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND----GYAIVLSKSPSTSNII 379 (416)
Q Consensus 308 ~EfG~~~~~---~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d----g~~i~~~~~~~~~~~~ 379 (416)
+|+|+...+ .+ ..++.|..|++.++.++.+++++|.++.|++.|++.|+ .+|.. +||++++|..+..|++
T Consensus 343 TENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn--~ew~~gy~~rfGl~~VD~~~~~R~~ 420 (427)
T TIGR03356 343 TENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDN--FEWAEGYSKRFGLVHVDYETQKRTP 420 (427)
T ss_pred eCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccc--cchhcccccccceEEECCCCCcccc
Confidence 999997543 11 35778999999999999999999999999999999999 77754 7889999887778888
Q ss_pred HHHHH
Q 014902 380 SLHST 384 (416)
Q Consensus 380 ~~~~~ 384 (416)
|+++.
T Consensus 421 K~S~~ 425 (427)
T TIGR03356 421 KDSAK 425 (427)
T ss_pred cceee
Confidence 87764
No 8
>PLN02814 beta-glucosidase
Probab=99.95 E-value=2.6e-26 Score=233.85 Aligned_cols=310 Identities=14% Similarity=0.181 Sum_probs=217.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
..+++++|+++||++|+|+.|+ ..+|++++|. .|.+|+++++.++++|+++.++||+++|||+ ||+.
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRf----SIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H~dl------- 142 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRF----SISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-HYDL------- 142 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEE----eccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-CCCC-------
Confidence 3689999999999999999999 3579999986 5789999999999999999999999999999 6875
Q ss_pred HHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC-------Ch---
Q 014902 130 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-------SG--- 198 (416)
Q Consensus 130 ~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~-------~~--- 198 (416)
|.|.... | .|.++++.+.|.+|++.+++| |+| .|-.|.+.|||++.... .+
T Consensus 143 P~~L~~~yG--------GW~n~~~i~~F~~YA~~~f~~--------fgd--rVk~WiT~NEP~~~~~~gy~~G~~pg~~~ 204 (504)
T PLN02814 143 PQSLEDEYG--------GWINRKIIEDFTAFADVCFRE--------FGE--DVKLWTTINEATIFAIGSYGQGIRYGHCS 204 (504)
T ss_pred CHHHHHhcC--------CcCChhHHHHHHHHHHHHHHH--------hCC--cCCEEEeccccchhhhcccccCcCCCCCC
Confidence 5676543 4 589999999999999999999 999 79999999999964210 00
Q ss_pred --------------hHHHHH------HHHHHHHhhhc---CCCcEEEeccc--cccCCCC-CCC-------------cCC
Q 014902 199 --------------DTLQSW------IQEMAVYVKSI---DAKHLVEIGLE--GFYGPSA-PDR-------------AKF 239 (416)
Q Consensus 199 --------------~~~~~w------~~~~~~~Ir~~---dp~~lV~~g~~--g~~~~~~-~~~-------------~~~ 239 (416)
..++.- ...+..++|+. .|+..|++... .+++.+. ++. ...
T Consensus 205 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~ 284 (504)
T PLN02814 205 PNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWML 284 (504)
T ss_pred cccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 011111 12345667764 66666655432 2222211 100 000
Q ss_pred CcC---cccc------------cccchhhhhhCCCCCcEEEEeecCCCcCCC---C--------Ch-------------h
Q 014902 240 NPN---SYAT------------QVGTDFIRNHQTLGVDFASVHIYADSWISQ---T--------IS-------------D 280 (416)
Q Consensus 240 np~---~~~~------------~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~---~--------~~-------------~ 280 (416)
+|. .|.. ....|. ......+||+++++|....... . +. .
T Consensus 285 dp~~~G~YP~~~~~~l~~~lp~~~~~d~--~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (504)
T PLN02814 285 KPLVFGDYPDEMKRTLGSRLPVFSEEES--EQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNS 362 (504)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHH--HHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCc
Confidence 110 0100 000010 1122467999999994322110 0 00 0
Q ss_pred H--HHHHHHHHHHHHHHHHHHhCCC-cEEEEecCCccCCCC-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCC
Q 014902 281 A--HLQFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD 356 (416)
Q Consensus 281 ~--~~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 356 (416)
+ ..+..+.-|+..+...++++++ ||+|+|+|+...+.+ ..++.|..|++.++.++.+++.+|.++.|++.|++.|+
T Consensus 363 ~~~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDn 442 (504)
T PLN02814 363 SFFEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDL 442 (504)
T ss_pred CCCCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh
Confidence 0 0123455566666666555766 799999999755422 46788999999999999999999999999999999999
Q ss_pred CCCCCCC----CceEEeCCCc--CHHHHHHHHHHHHHhcccCCC
Q 014902 357 GTDYMND----GYAIVLSKSP--STSNIISLHSTRIATFNSLCS 394 (416)
Q Consensus 357 g~~~~~d----g~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 394 (416)
.+|.. +||++++|.+ +..|++|+++..++.+-....
T Consensus 443 --fEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~ 484 (504)
T PLN02814 443 --YELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTI 484 (504)
T ss_pred --hchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCC
Confidence 77754 7889998876 458999999999998875543
No 9
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.95 E-value=4.2e-26 Score=231.24 Aligned_cols=308 Identities=14% Similarity=0.169 Sum_probs=218.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
..+++++|+++|+++|+|+.|+ ..+|+++.|. +|.+|+++++.++++|+.+.++||+++|||+ ||+.
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRf----SIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H~dl------- 118 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRI----SIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-HFDT------- 118 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEE----ecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-CCCC-------
Confidence 3589999999999999999999 3579999986 4789999999999999999999999999999 5764
Q ss_pred HHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC--------CCh---
Q 014902 130 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG--- 198 (416)
Q Consensus 130 ~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~--------~~~--- 198 (416)
|.|....| .|.++++++.|.+|++.++++ |++ |--|.+.|||++... +.+
T Consensus 119 P~~L~~~G--------GW~n~~~v~~F~~YA~~~f~~--------fgd---Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 179 (467)
T TIGR01233 119 PEALHSNG--------DFLNRENIEHFIDYAAFCFEE--------FPE---VNYWTTFNEIGPIGDGQYLVGKFPPGIKY 179 (467)
T ss_pred cHHHHHcC--------CCCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEecchhhhhhccchhcccCCCccc
Confidence 56765545 589999999999999999999 984 888999999996432 111
Q ss_pred ---hHHHHH------HHHHHHHhhhcCCCcEEEecccc--ccCCC-C-CCC-------------cCCCcC---ccccc--
Q 014902 199 ---DTLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPS-A-PDR-------------AKFNPN---SYATQ-- 247 (416)
Q Consensus 199 ---~~~~~w------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~-~-~~~-------------~~~np~---~~~~~-- 247 (416)
..++.. ..+++.++|+..|+..|++.... +++.+ . +.. ...+|. .|...
T Consensus 180 ~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~ 259 (467)
T TIGR01233 180 DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTM 259 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111111 13456778888888777654322 23321 1 100 001111 11000
Q ss_pred --------cc--------chhhhhhC-CCCCcEEEEeecCCCcCCC-----------C-----------C------h---
Q 014902 248 --------VG--------TDFIRNHQ-TLGVDFASVHIYADSWISQ-----------T-----------I------S--- 279 (416)
Q Consensus 248 --------~g--------~d~~~~~~-~~~iD~~s~H~Y~~~w~~~-----------~-----------~------~--- 279 (416)
.+ .|...... ...+||+++++|....... . . .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (467)
T TIGR01233 260 EGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYV 339 (467)
T ss_pred HHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCC
Confidence 00 00000000 2467999999994322110 0 0 0
Q ss_pred h-H--HHHHHHHHHHHHHHHHHHhCCC--cEEEEecCCccCC---CC-CChhHHHHHHHHHHHHHHHhhhcCCccccccc
Q 014902 280 D-A--HLQFTKSWMEAHIEDAEKYLRM--PVLFTEFGVSAKD---TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLL 350 (416)
Q Consensus 280 ~-~--~~~~~~~~i~~~~~~a~~~~~k--Pv~i~EfG~~~~~---~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~ 350 (416)
. + ..+..+..|+..+...++++++ ||+|+|+|+...+ .+ ..++.|..|++.++.++.+++.+|..+.|++.
T Consensus 340 ~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~ 419 (467)
T TIGR01233 340 PRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFI 419 (467)
T ss_pred CcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0 0 0133456677777666666776 6999999998542 12 45778999999999999999999999999999
Q ss_pred cccCCCCCCCCCC----CceEEeCCCcCHHHHHHHHHHHHHhccc
Q 014902 351 WQLFPDGTDYMND----GYAIVLSKSPSTSNIISLHSTRIATFNS 391 (416)
Q Consensus 351 W~~~~~g~~~~~d----g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 391 (416)
|++.|+ .+|.. +||++++|.++..|++|+++..++.+-.
T Consensus 420 WSl~Dn--~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy~~ii~ 462 (467)
T TIGR01233 420 WSLMDV--FSWSNGYEKRYGLFYVDFDTQERYPKKSAHWYKKLAE 462 (467)
T ss_pred ccchhh--hchhccccCccceEEECCCCCccccccHHHHHHHHHH
Confidence 999999 77754 7899999988889999999999987653
No 10
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.95 E-value=5.3e-26 Score=231.04 Aligned_cols=309 Identities=13% Similarity=0.174 Sum_probs=215.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
..+++++|+++||++|+|+.|+ ..+|+++.|. .|.+|+++++.++++|+++.++||.++|||+ ||+.
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRf----SIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H~dl------- 119 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRI----SIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-HFDT------- 119 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEe----eccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-CCCC-------
Confidence 3589999999999999999999 3579999986 4679999999999999999999999999999 5764
Q ss_pred HHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC--------CCh---
Q 014902 130 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSG--- 198 (416)
Q Consensus 130 ~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~--------~~~--- 198 (416)
|.|....| .|.++++.+.|.+|++.+++| |+| |--|.+.|||++... +.+
T Consensus 120 P~~L~~~G--------GW~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~ 180 (469)
T PRK13511 120 PEALHSNG--------DWLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKY 180 (469)
T ss_pred cHHHHHcC--------CCCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCc
Confidence 56765544 589999999999999999999 988 888999999986531 111
Q ss_pred ---hHHHHH------HHHHHHHhhhcCCCcEEEeccc--cccCCC-C-CCC-------------cCCCcC---ccccc--
Q 014902 199 ---DTLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPS-A-PDR-------------AKFNPN---SYATQ-- 247 (416)
Q Consensus 199 ---~~~~~w------~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~-~-~~~-------------~~~np~---~~~~~-- 247 (416)
..++.- ..++++++|+..++..|++... .+++.+ . ++. ...+|. .|...
T Consensus 181 ~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~ 260 (469)
T PRK13511 181 DLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETM 260 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111111 1334667888877766655432 222221 1 110 001111 01000
Q ss_pred ---------ccc--hhhh----hhCC--CCCcEEEEeecCCCcCCC---C----------------------------C-
Q 014902 248 ---------VGT--DFIR----NHQT--LGVDFASVHIYADSWISQ---T----------------------------I- 278 (416)
Q Consensus 248 ---------~g~--d~~~----~~~~--~~iD~~s~H~Y~~~w~~~---~----------------------------~- 278 (416)
.|. .+.. .... ..+||+++++|....... . .
T Consensus 261 ~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (469)
T PRK13511 261 EGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDV 340 (469)
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCC
Confidence 000 0000 0001 347999999995422110 0 0
Q ss_pred hhH--HHHHHHHHHHHHHHHHHHhCCC--cEEEEecCCccCCC-----CCChhHHHHHHHHHHHHHHHhhhcCCcccccc
Q 014902 279 SDA--HLQFTKSWMEAHIEDAEKYLRM--PVLFTEFGVSAKDT-----GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSL 349 (416)
Q Consensus 279 ~~~--~~~~~~~~i~~~~~~a~~~~~k--Pv~i~EfG~~~~~~-----g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~ 349 (416)
... ..+..+.-|+..+...++++++ ||+|+|+|+...+. ...++.|..|++.++.++.+++++|.++.|++
T Consensus 341 ~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~ 420 (469)
T PRK13511 341 PTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYF 420 (469)
T ss_pred CcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000 0122344566656555555765 79999999974431 13567899999999999999999999999999
Q ss_pred ccccCCCCCCCCCC----CceEEeCCCcCHHHHHHHHHHHHHhcccC
Q 014902 350 LWQLFPDGTDYMND----GYAIVLSKSPSTSNIISLHSTRIATFNSL 392 (416)
Q Consensus 350 ~W~~~~~g~~~~~d----g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (416)
.|++.|+ .+|.. +||++++|.++..|++|+++..++.+-..
T Consensus 421 ~WSl~Dn--fEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~i~~ 465 (469)
T PRK13511 421 IWSLMDV--FSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKLAET 465 (469)
T ss_pred ecccccc--cchhcCccCccceEEECCCcCccccccHHHHHHHHHHh
Confidence 9999999 77754 68899999888899999999999887543
No 11
>PLN02849 beta-glucosidase
Probab=99.95 E-value=5.9e-26 Score=231.17 Aligned_cols=308 Identities=15% Similarity=0.172 Sum_probs=215.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCC-CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP-SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~-g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
..+++++|+++||++|+|+.|+ ..+|++++|.. |.+|+++++.++++|+++.++||+++|||+ ||+.
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRf----SIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H~dl------- 144 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRF----SISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-HYDH------- 144 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEE----eccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-CCCC-------
Confidence 3689999999999999999999 35799999863 679999999999999999999999999999 6874
Q ss_pred HHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC--------CChh-
Q 014902 130 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PSGD- 199 (416)
Q Consensus 130 ~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~--------~~~~- 199 (416)
|.|.... | .|.|+++.+.|.+|++.+++| |+| .|-.|.+.|||++... +.+.
T Consensus 145 P~~L~~~yG--------GW~nr~~v~~F~~YA~~~f~~--------fgD--rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 206 (503)
T PLN02849 145 PQYLEDDYG--------GWINRRIIKDFTAYADVCFRE--------FGN--HVKFWTTINEANIFTIGGYNDGITPPGRC 206 (503)
T ss_pred cHHHHHhcC--------CcCCchHHHHHHHHHHHHHHH--------hcC--cCCEEEEecchhhhhhchhhhccCCCCcc
Confidence 5676543 4 589999999999999999999 999 7999999999996421 1110
Q ss_pred ---------------HHHHH------HHHHHHHhhhc---CCCcEEEeccc--cccCCCC-CCC-------------cCC
Q 014902 200 ---------------TLQSW------IQEMAVYVKSI---DAKHLVEIGLE--GFYGPSA-PDR-------------AKF 239 (416)
Q Consensus 200 ---------------~~~~w------~~~~~~~Ir~~---dp~~lV~~g~~--g~~~~~~-~~~-------------~~~ 239 (416)
.++.- ..++..++|+. .|+..|++-.. .+++.+. ++. ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~ 286 (503)
T PLN02849 207 SSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWML 286 (503)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 11111 12345667765 36666665332 2233211 100 000
Q ss_pred CcC---cccc------------cccchhhhhhCCCCCcEEEEeecCCCcCCC---C----Ch-----------h-H---H
Q 014902 240 NPN---SYAT------------QVGTDFIRNHQTLGVDFASVHIYADSWISQ---T----IS-----------D-A---H 282 (416)
Q Consensus 240 np~---~~~~------------~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~---~----~~-----------~-~---~ 282 (416)
+|. .|.. ....|. ......+||+++++|....... . .. . . .
T Consensus 287 dp~~~G~YP~~~~~~l~~~lp~~~~~d~--~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 364 (503)
T PLN02849 287 EPLIFGDYPDEMKRTIGSRLPVFSKEES--EQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFE 364 (503)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHH--HHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCC
Confidence 110 0100 000000 1122467999999994322110 0 00 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-cEEEEecCCccCC--CC-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCC
Q 014902 283 LQFTKSWMEAHIEDAEKYLRM-PVLFTEFGVSAKD--TG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 358 (416)
Q Consensus 283 ~~~~~~~i~~~~~~a~~~~~k-Pv~i~EfG~~~~~--~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 358 (416)
.+..+.-|+..+...++++++ ||+|+|+|+...+ .+ ..++.|..|++.++.++.+++.+|.++.|++.|++.|+
T Consensus 365 w~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn-- 442 (503)
T PLN02849 365 YAVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDL-- 442 (503)
T ss_pred CeEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--
Confidence 133455566666666555788 7999999998543 12 35778999999999999999999999999999999999
Q ss_pred CCCCC----CceEEeCCCcC--HHHHHHHHHHHHHhcccC
Q 014902 359 DYMND----GYAIVLSKSPS--TSNIISLHSTRIATFNSL 392 (416)
Q Consensus 359 ~~~~d----g~~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 392 (416)
.+|.. +||++++|..+ ..|++|+++..++.+-..
T Consensus 443 fEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~ 482 (503)
T PLN02849 443 YELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKG 482 (503)
T ss_pred hchhccccCccceEEECCCCCCcceecccHHHHHHHHHHh
Confidence 77753 78999988664 489999999999987543
No 12
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.95 E-value=1.2e-25 Score=228.06 Aligned_cols=308 Identities=16% Similarity=0.206 Sum_probs=215.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
.+++++|+++|+++|+|+.|+ ..+|+++.|. .+.+|+++++.++++|+++.++||+++|||+ ||+.
T Consensus 68 Yhry~EDI~Lm~elG~~~yRf----SIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H~dl------- 135 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRT----SIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-HFEM------- 135 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEe----cccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-CCCC-------
Confidence 578999999999999999999 3579999986 3568999999999999999999999999998 5764
Q ss_pred HHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC-----C-----C---
Q 014902 130 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT-----S-----D--- 195 (416)
Q Consensus 130 ~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~-----~-----~--- 195 (416)
|.|.... | .|.++++.+.|.+|++.+++| |+| .|-.|.+.|||+.. . .
T Consensus 136 P~~L~~~yG--------GW~n~~~~~~F~~Ya~~~f~~--------fgd--rVk~WiT~NEp~~~~~~~~~~~gy~~~g~ 197 (477)
T PRK15014 136 PLHLVQQYG--------SWTNRKVVDFFVRFAEVVFER--------YKH--KVKYWMTFNEINNQRNWRAPLFGYCCSGV 197 (477)
T ss_pred CHHHHHhcC--------CCCChHHHHHHHHHHHHHHHH--------hcC--cCCEEEEecCccccccccccccccccccc
Confidence 5566442 4 589999999999999999999 999 68899999999843 1 0
Q ss_pred --CCh----h-HHHHH------HHHHHHHhhhcCCCcEEEeccc--cccCCCC-CCC-----------c-CCCcC---cc
Q 014902 196 --PSG----D-TLQSW------IQEMAVYVKSIDAKHLVEIGLE--GFYGPSA-PDR-----------A-KFNPN---SY 244 (416)
Q Consensus 196 --~~~----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~~-~~~-----------~-~~np~---~~ 244 (416)
+.+ . .++.- ..++..++|+..|+..|++... .+++.+. ++. . ..+|. .|
T Consensus 198 ~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~Y 277 (477)
T PRK15014 198 VYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYY 277 (477)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCC
Confidence 111 1 11111 1334677888888777765432 2233211 100 0 11111 01
Q ss_pred cc-------cccc--hhh----hhhCCCCCcEEEEeecCCCcCCC---------------CCh--h-H--HHHHHHHHHH
Q 014902 245 AT-------QVGT--DFI----RNHQTLGVDFASVHIYADSWISQ---------------TIS--D-A--HLQFTKSWME 291 (416)
Q Consensus 245 ~~-------~~g~--d~~----~~~~~~~iD~~s~H~Y~~~w~~~---------------~~~--~-~--~~~~~~~~i~ 291 (416)
.. ..+. ++. .......+||+++++|....... .+. . + ..+..+..|+
T Consensus 278 P~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~ 357 (477)
T PRK15014 278 PSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR 357 (477)
T ss_pred CHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHH
Confidence 00 0000 000 00113467999999994322110 000 0 0 1234456677
Q ss_pred HHHHHHHHhCCCcEEEEecCCccCC----CC-CChhHHHHHHHHHHHHHHHhhh-cCCccccccccccCCCCCCCCCC--
Q 014902 292 AHIEDAEKYLRMPVLFTEFGVSAKD----TG-YNTSFRDTLISSVYKTLLNSTK-KGGSGAGSLLWQLFPDGTDYMND-- 363 (416)
Q Consensus 292 ~~~~~a~~~~~kPv~i~EfG~~~~~----~g-~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~~~d-- 363 (416)
..+...++++++||+|+|+|+...+ .| ..++.|..|++.++.++.+++. +|.++.|++.|++.|+ .+|..
T Consensus 358 ~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dn--fEw~~G~ 435 (477)
T PRK15014 358 YALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDC--VSFTTGQ 435 (477)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hcccCCC
Confidence 7776666668999999999998543 12 3577899999999999999995 8999999999999999 77755
Q ss_pred ---CceEEeCCCc-----CHHHHHHHHHHHHHhccc
Q 014902 364 ---GYAIVLSKSP-----STSNIISLHSTRIATFNS 391 (416)
Q Consensus 364 ---g~~i~~~~~~-----~~~~~~~~~~~~~~~~~~ 391 (416)
+||++++|.. +..|++|+++..++.+-.
T Consensus 436 y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~ 471 (477)
T PRK15014 436 YSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIA 471 (477)
T ss_pred ccCccceEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 4999998754 458999999999988753
No 13
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.4e-25 Score=220.53 Aligned_cols=308 Identities=18% Similarity=0.223 Sum_probs=217.6
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
.+++++|+++||+||+|++|+ ..+|+++-|.++ ..|+++|+.+|+++++|.++||.++|||+ ||+.
T Consensus 58 YhrYkeDi~L~~emG~~~~R~----SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-Hfd~------- 125 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRT----SIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-HFDL------- 125 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEe----eeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-ccCC-------
Confidence 579999999999999999999 357999988654 59999999999999999999999999999 5764
Q ss_pred HHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC---------C---
Q 014902 130 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP---------S--- 197 (416)
Q Consensus 130 ~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~---------~--- 197 (416)
|.|..... ..|.|+++++.|.+|++.+++| |+| .|--|.++|||++.... .
T Consensus 126 P~~L~~~y-------gGW~nR~~i~~F~~ya~~vf~~--------f~d--kVk~W~TFNE~n~~~~~~y~~~~~~p~~~~ 188 (460)
T COG2723 126 PLWLQKPY-------GGWENRETVDAFARYAATVFER--------FGD--KVKYWFTFNEPNVVVELGYLYGGHPPGIVD 188 (460)
T ss_pred cHHHhhcc-------CCccCHHHHHHHHHHHHHHHHH--------hcC--cceEEEEecchhhhhcccccccccCCCccC
Confidence 45554431 2599999999999999999999 999 79999999999976431 1
Q ss_pred hh-HHHHHH------HHHHHHhhhcCCCcEE--EeccccccCCCC-CCC-------------cCCCcC---cccc-----
Q 014902 198 GD-TLQSWI------QEMAVYVKSIDAKHLV--EIGLEGFYGPSA-PDR-------------AKFNPN---SYAT----- 246 (416)
Q Consensus 198 ~~-~~~~w~------~~~~~~Ir~~dp~~lV--~~g~~g~~~~~~-~~~-------------~~~np~---~~~~----- 246 (416)
.+ .++... ....+.+|++.|+-.| +......++.+. ++. ...+|. .|+.
T Consensus 189 ~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~ 268 (460)
T COG2723 189 PKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKE 268 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHH
Confidence 11 122222 2335667888886223 233333444332 111 011110 0100
Q ss_pred --c-------ccchhhhhhCCCCCcEEEEeecC-CCc-----------CCCCCh-----------hHHHHHHHHHHHHHH
Q 014902 247 --Q-------VGTDFIRNHQTLGVDFASVHIYA-DSW-----------ISQTIS-----------DAHLQFTKSWMEAHI 294 (416)
Q Consensus 247 --~-------~g~d~~~~~~~~~iD~~s~H~Y~-~~w-----------~~~~~~-----------~~~~~~~~~~i~~~~ 294 (416)
. +..|.. ......+||+++++|. ... ....-. +-..+..++-|+..+
T Consensus 269 ~~~~~~~~~~~~~Dl~-~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l 347 (460)
T COG2723 269 LEENGILPEIEDGDLE-ILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDIL 347 (460)
T ss_pred HHhcCCCcccCcchHH-HHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHH
Confidence 0 001111 1122359999999996 211 100000 001345566677777
Q ss_pred HHHHHhCCCcEEEEecCCccCCC----CCChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCC----CCce
Q 014902 295 EDAEKYLRMPVLFTEFGVSAKDT----GYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMN----DGYA 366 (416)
Q Consensus 295 ~~a~~~~~kPv~i~EfG~~~~~~----g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~----dg~~ 366 (416)
....+++++|++|+|.|+...+. +..++.|..|++.++.++.+++.+|..+.|++.|++.|. .+|. -+||
T Consensus 348 ~~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~--~sw~~gy~kRYG 425 (460)
T COG2723 348 EKLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDN--YSWANGYKKRYG 425 (460)
T ss_pred HHHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccc--cchhhccccccc
Confidence 76765689999999999775541 246789999999999999999999999999999999998 4443 3899
Q ss_pred EEeCCCcC-HHHHHHHHHHHHHhccc
Q 014902 367 IVLSKSPS-TSNIISLHSTRIATFNS 391 (416)
Q Consensus 367 i~~~~~~~-~~~~~~~~~~~~~~~~~ 391 (416)
++++|.++ ..|++|.++.+++.+..
T Consensus 426 li~VD~~~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 426 LVYVDYDTDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred cEEEcccccceeeecCceeeeHHHHh
Confidence 99998877 58999999999887664
No 14
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.94 E-value=3.3e-25 Score=224.41 Aligned_cols=308 Identities=18% Similarity=0.234 Sum_probs=215.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
.+++++|+++|+++|+|++|+ ..+|+++.|. ++.+|+++++.+|++|+++.++||.++|||+ ||+.
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~----si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~-H~~~------- 137 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRT----SIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC-HFDV------- 137 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEe----eceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-CCCC-------
Confidence 578999999999999999999 3469999886 3468999999999999999999999999999 5664
Q ss_pred HHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC----------CCh
Q 014902 130 VKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD----------PSG 198 (416)
Q Consensus 130 ~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~----------~~~ 198 (416)
|.|.... | .|.++++++.|.+|++.+++| |++ .|-.|.++|||++... +.+
T Consensus 138 P~~l~~~~G--------GW~~~~~~~~F~~ya~~~~~~--------fgd--~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~ 199 (474)
T PRK09852 138 PMHLVTEYG--------SWRNRKMVEFFSRYARTCFEA--------FDG--LVKYWLTFNEINIMLHSPFSGAGLVFEEG 199 (474)
T ss_pred CHHHHHhcC--------CCCCHHHHHHHHHHHHHHHHH--------hcC--cCCeEEeecchhhhhccCccccCcccCCC
Confidence 5565432 3 589999999999999999999 999 7889999999985421 111
Q ss_pred ----h-HHHHH------HHHHHHHhhhcCCCcEEEecccc--ccCCCC-CCC------------cCCCcC---cccc---
Q 014902 199 ----D-TLQSW------IQEMAVYVKSIDAKHLVEIGLEG--FYGPSA-PDR------------AKFNPN---SYAT--- 246 (416)
Q Consensus 199 ----~-~~~~w------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~~-~~~------------~~~np~---~~~~--- 246 (416)
. .++.- ..++..++|+..|+..|++.... +++.+. ++. ...+|. .|..
T Consensus 200 ~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~ 279 (474)
T PRK09852 200 ENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSA 279 (474)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHH
Confidence 1 11111 13345677888887666654322 232211 100 000110 0100
Q ss_pred ----cccc--hhh---hhhCCCCCcEEEEeecCCCcCCC-----C----C-------h--h-H--HHHHHHHHHHHHHHH
Q 014902 247 ----QVGT--DFI---RNHQTLGVDFASVHIYADSWISQ-----T----I-------S--D-A--HLQFTKSWMEAHIED 296 (416)
Q Consensus 247 ----~~g~--d~~---~~~~~~~iD~~s~H~Y~~~w~~~-----~----~-------~--~-~--~~~~~~~~i~~~~~~ 296 (416)
..+. ++. .......+||+++++|....... . . + . + ..+..+..|+..+..
T Consensus 280 ~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~ 359 (474)
T PRK09852 280 RVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNM 359 (474)
T ss_pred HHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHH
Confidence 0000 000 00113467999999994422110 0 0 0 0 0 013345667776766
Q ss_pred HHHhCCCcEEEEecCCccCCC----C-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCCCC-----ce
Q 014902 297 AEKYLRMPVLFTEFGVSAKDT----G-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDG-----YA 366 (416)
Q Consensus 297 a~~~~~kPv~i~EfG~~~~~~----g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg-----~~ 366 (416)
.++++++||+|+|+|+...+. + ..+..|..|++.++.++.+++.+|.++.|++.|++.|+ .+|..| ||
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~G~y~~RfG 437 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDL--VSASTGEMSKRYG 437 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccc--ccccCCCccceee
Confidence 655689999999999985431 2 35778999999999999999999999999999999999 777654 89
Q ss_pred EEeCCCc-----CHHHHHHHHHHHHHhccc
Q 014902 367 IVLSKSP-----STSNIISLHSTRIATFNS 391 (416)
Q Consensus 367 i~~~~~~-----~~~~~~~~~~~~~~~~~~ 391 (416)
++++|.+ +..|++|+++..++.+-.
T Consensus 438 Lv~VD~~~~~~~t~~R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 438 FVYVDRDDAGNGTLTRTRKKSFWWYKKVIA 467 (474)
T ss_pred eEEECCCCCCCcccceecccHHHHHHHHHH
Confidence 9998865 458999999999998764
No 15
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.94 E-value=7.6e-27 Score=237.43 Aligned_cols=307 Identities=16% Similarity=0.251 Sum_probs=206.3
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
.+++++||++||++|+|++|+ ..+|++++|. .|.+|+++++.++++|+.++++||++||||+ ||+.
T Consensus 57 y~~y~eDi~l~~~lg~~~yRf----si~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H~~~------- 124 (455)
T PF00232_consen 57 YHRYKEDIALMKELGVNAYRF----SISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-HFDL------- 124 (455)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE----E--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-SS---------
T ss_pred hhhhhHHHHHHHhhccceeee----ecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-eccc-------
Confidence 578999999999999999999 2479999998 5999999999999999999999999999999 5663
Q ss_pred HHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC--------CC----
Q 014902 130 VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD--------PS---- 197 (416)
Q Consensus 130 ~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~--------~~---- 197 (416)
|.|....| .|.+++..+.|.+|++.+++| |++ .|-.|.+.|||+.... +.
T Consensus 125 P~~l~~~g--------gw~~~~~~~~F~~Ya~~~~~~--------~gd--~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~ 186 (455)
T PF00232_consen 125 PLWLEDYG--------GWLNRETVDWFARYAEFVFER--------FGD--RVKYWITFNEPNVFALLGYLYGGFPPGRDS 186 (455)
T ss_dssp BHHHHHHT--------GGGSTHHHHHHHHHHHHHHHH--------HTT--TBSEEEEEETHHHHHHHHHTSSSSTTCSST
T ss_pred ccceeecc--------cccCHHHHHHHHHHHHHHHHH--------hCC--CcceEEeccccceeeccccccccccccccc
Confidence 66766545 589999999999999999999 999 7889999999985321 11
Q ss_pred hhHHHH-------HHHHHHHHhhhcCCCcEEEeccc--cccCCCCC--CC--------------------cCCCcCc---
Q 014902 198 GDTLQS-------WIQEMAVYVKSIDAKHLVEIGLE--GFYGPSAP--DR--------------------AKFNPNS--- 243 (416)
Q Consensus 198 ~~~~~~-------w~~~~~~~Ir~~dp~~lV~~g~~--g~~~~~~~--~~--------------------~~~np~~--- 243 (416)
.....+ -..++...+|+..|+..|++... .+++.+.. +. ....|..
T Consensus 187 ~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~ 266 (455)
T PF00232_consen 187 LKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKE 266 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHH
T ss_pred cchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhh
Confidence 112112 22455778899889988876432 12222110 00 0011100
Q ss_pred cccccc--chh---hhhhCCCCCcEEEEeecCCCcC---C--CCCh-----------------hH--HHHHHHHHHHHHH
Q 014902 244 YATQVG--TDF---IRNHQTLGVDFASVHIYADSWI---S--QTIS-----------------DA--HLQFTKSWMEAHI 294 (416)
Q Consensus 244 ~~~~~g--~d~---~~~~~~~~iD~~s~H~Y~~~w~---~--~~~~-----------------~~--~~~~~~~~i~~~~ 294 (416)
+....| ..+ ........+||+++++|..... + .... .+ ..+..+..|+..+
T Consensus 267 ~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L 346 (455)
T PF00232_consen 267 YLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVL 346 (455)
T ss_dssp HHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHH
T ss_pred ccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhh
Confidence 000000 000 0111246799999999953221 0 0000 00 0122245566666
Q ss_pred HHHHHhCC-CcEEEEecCCccCCC---C-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCCC----Cc
Q 014902 295 EDAEKYLR-MPVLFTEFGVSAKDT---G-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND----GY 365 (416)
Q Consensus 295 ~~a~~~~~-kPv~i~EfG~~~~~~---g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d----g~ 365 (416)
...+++++ +||+|+|+|+...+. + ..+..|..|++.++.++.+++++|.++.|+++|++.|+ .+|.+ +|
T Consensus 347 ~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~Gy~~rf 424 (455)
T PF00232_consen 347 RYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDN--FEWAEGYKKRF 424 (455)
T ss_dssp HHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGGGGGSE-
T ss_pred hhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccc--cccccCccCcc
Confidence 65544455 999999999987652 1 35789999999999999999999999999999999999 78864 68
Q ss_pred eEEeCC-CcCHHHHHHHHHHHHHhcc
Q 014902 366 AIVLSK-SPSTSNIISLHSTRIATFN 390 (416)
Q Consensus 366 ~i~~~~-~~~~~~~~~~~~~~~~~~~ 390 (416)
|++++| .++..|++|.++..++.+-
T Consensus 425 Gl~~VD~~~~~~R~pK~S~~~y~~~i 450 (455)
T PF00232_consen 425 GLVYVDFFDTLKRTPKKSAYWYKDFI 450 (455)
T ss_dssp -SEEEETTTTTEEEEBHHHHHHHHHH
T ss_pred CceEEcCCCCcCeeeccHHHHHHHHH
Confidence 899988 8889999999999998764
No 16
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.90 E-value=7.7e-22 Score=190.60 Aligned_cols=158 Identities=16% Similarity=0.257 Sum_probs=112.0
Q ss_pred EEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHH
Q 014902 18 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA 97 (416)
Q Consensus 18 v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ 97 (416)
|.|++++|.|||||++++|+|.+..........+.+.+++||..||++|+|+||+... ..+
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~-------------p~~------ 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHY-------------PPS------ 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS---------------S------
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccc-------------cCc------
Confidence 7899999999999999999997632222122346789999999999999999999332 112
Q ss_pred HHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccC
Q 014902 98 LDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN 177 (416)
Q Consensus 98 lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~ 177 (416)
.++++.|++.||.|+..+.. +. .+. |.. .| .......++...+.+.+.++.+|.| ++|
T Consensus 62 -~~~~~~cD~~GilV~~e~~~-~~-~~~------~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~N 119 (298)
T PF02836_consen 62 -PRFYDLCDELGILVWQEIPL-EG-HGS------WQD-FG----NCNYDADDPEFRENAEQELREMVRR--------DRN 119 (298)
T ss_dssp -HHHHHHHHHHT-EEEEE-S--BS-CTS------SSS-TS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HTT
T ss_pred -HHHHHHHhhcCCEEEEeccc-cc-cCc------ccc-CC----ccccCCCCHHHHHHHHHHHHHHHHc--------CcC
Confidence 25678999999999987642 00 010 000 00 0012345788899999999999999 999
Q ss_pred CCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEecc
Q 014902 178 DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 225 (416)
Q Consensus 178 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 225 (416)
||+|++|.++||+ ....+++++.+.+|++||+++|+..+
T Consensus 120 HPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 120 HPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp -TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred cCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 9999999999999 25678899999999999999998764
No 17
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.87 E-value=3.1e-21 Score=192.16 Aligned_cols=287 Identities=20% Similarity=0.266 Sum_probs=157.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
+++.+++||+.|+++|+|+||+..| .|..+||++|.|| |..||++|+.|.++||+|+|.+... . .|
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~-----~---~P 73 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA-----A---PP 73 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT-----T---S-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe---chhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc-----c---cc
Confidence 4689999999999999999999555 4889999999998 8889999999999999999987532 1 14
Q ss_pred Hhhhhc----------CCCC---CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCC
Q 014902 131 KWGKAA----------GLNL---TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS 197 (416)
Q Consensus 131 ~w~~~~----------G~~~---~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~ 197 (416)
.|.... |... ......+.+|.+++.++++++.+++| |+++|+|++|+|.|||.+..+.+
T Consensus 74 ~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 74 AWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--S
T ss_pred cchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCC
Confidence 564321 1100 01222466788999999999999999 99999999999999997732110
Q ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHhhhc
Q 014902 198 --------------------------------------------------------------GDTLQSWIQEMAVYVKSI 215 (416)
Q Consensus 198 --------------------------------------------------------------~~~~~~w~~~~~~~Ir~~ 215 (416)
.+.+..+++.+.+.||+.
T Consensus 146 ~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~ 225 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREY 225 (374)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 022444566778999999
Q ss_pred CCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCC-cCCCCChhHHHHHHHHHHHHHH
Q 014902 216 DAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADS-WISQTISDAHLQFTKSWMEAHI 294 (416)
Q Consensus 216 dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~i~~~~ 294 (416)
+|+++|++...+.. ..+.|+.. ....+|+++++.||.. +...........+....++.
T Consensus 226 ~p~~~vt~n~~~~~-----------------~~~~d~~~--~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~-- 284 (374)
T PF02449_consen 226 DPDHPVTTNFMGSW-----------------FNGIDYFK--WAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRS-- 284 (374)
T ss_dssp STT-EEE-EE-TT--------------------SS-HHH--HGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHH--
T ss_pred CCCceEEeCccccc-----------------cCcCCHHH--HHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHh--
Confidence 99999997543210 01123322 2467999999999871 00011101111222222221
Q ss_pred HHHHHhCCCcEEEEecCCccCCCC-CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCCCCceEEeCCC-
Q 014902 295 EDAEKYLRMPVLFTEFGVSAKDTG-YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKS- 372 (416)
Q Consensus 295 ~~a~~~~~kPv~i~EfG~~~~~~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~i~~~~~- 372 (416)
.+ .+||++|.|.-.....-+ .+...+...++. ..+.++..| ..|.++|+|.......-.-.++|+..|+
T Consensus 285 ---~~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~---~~~~~~A~G--a~~i~~~~wr~~~~g~E~~~~g~~~~dg~ 355 (374)
T PF02449_consen 285 ---LA-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRL---WSWQAIAHG--ADGILFWQWRQSRFGAEQFHGGLVDHDGR 355 (374)
T ss_dssp ---HT-TT--EEEEEE--S--SSSSS-----TTHHHH---HHHHHHHTT---S-EEEC-SB--SSSTTTTS--SB-TTS-
T ss_pred ---hc-CCCceEeecCCCCCCCCccCCCCCCCCHHHH---HHHHHHHHh--CCeeEeeeccCCCCCchhhhcccCCccCC
Confidence 12 699999999955422110 111111122222 122333334 6888999997652211112578887776
Q ss_pred cCH--HHHHHHHHHHHHhc
Q 014902 373 PST--SNIISLHSTRIATF 389 (416)
Q Consensus 373 ~~~--~~~~~~~~~~~~~~ 389 (416)
+.+ .+-+++.++.|++|
T Consensus 356 ~~~~~~~e~~~~~~~l~~i 374 (374)
T PF02449_consen 356 EPTRRYREVAQLGRELKKI 374 (374)
T ss_dssp -B-HHHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHHhcC
Confidence 322 23345555555543
No 18
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.85 E-value=1.8e-19 Score=198.40 Aligned_cols=234 Identities=17% Similarity=0.202 Sum_probs=157.5
Q ss_pred CCCc--EEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCC
Q 014902 14 DWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD 91 (416)
Q Consensus 14 ~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~ 91 (416)
.-|| |++++++|.+||+|++++|+|.+........+.+++.+++||+.||++|+|+||++... .+
T Consensus 314 ~~GfR~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP-------------~~ 380 (1021)
T PRK10340 314 RVGFRDIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYP-------------ND 380 (1021)
T ss_pred eeEEEEEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCC-------------CC
Confidence 4566 77789999999999999999986332222223467899999999999999999995321 11
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014902 92 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 92 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
+ +++++|+++||+|+-... .+. .|... .+ .......+|...+.+.+.++.+|.|
T Consensus 381 ~-------~fydlcDe~GllV~dE~~-~e~--~g~~~-------~~----~~~~~~~~p~~~~~~~~~~~~mV~R----- 434 (1021)
T PRK10340 381 P-------RFYELCDIYGLFVMAETD-VES--HGFAN-------VG----DISRITDDPQWEKVYVDRIVRHIHA----- 434 (1021)
T ss_pred H-------HHHHHHHHCCCEEEECCc-ccc--cCccc-------cc----ccccccCCHHHHHHHHHHHHHHHHh-----
Confidence 1 457999999999987652 110 11100 00 0011345677888899999999999
Q ss_pred cccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccch
Q 014902 172 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTD 251 (416)
Q Consensus 172 g~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d 251 (416)
++|||+|++|.++||.... . -+++|++.+|++||++||+.... .
T Consensus 435 ---drNHPSIi~WslGNE~~~g-----~----~~~~~~~~~k~~DptR~v~~~~~-----------------~------- 478 (1021)
T PRK10340 435 ---QKNHPSIIIWSLGNESGYG-----C----NIRAMYHAAKALDDTRLVHYEED-----------------R------- 478 (1021)
T ss_pred ---CCCCCEEEEEECccCcccc-----H----HHHHHHHHHHHhCCCceEEeCCC-----------------c-------
Confidence 9999999999999998642 2 24789999999999999975320 0
Q ss_pred hhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCC-CCCChhHHHHHHHH
Q 014902 252 FIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD-TGYNTSFRDTLISS 330 (416)
Q Consensus 252 ~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~-~g~~~~~r~~~~~~ 330 (416)
.....|+++. +|+.. + .+..+ .....+||++++||+..... +|. -.+|
T Consensus 479 -----~~~~~Dv~~~-~Y~~~-----------~----~~~~~---~~~~~~kP~i~~Ey~hamgn~~g~----~~~y--- 527 (1021)
T PRK10340 479 -----DAEVVDVIST-MYTRV-----------E----LMNEF---GEYPHPKPRILCEYAHAMGNGPGG----LTEY--- 527 (1021)
T ss_pred -----Cccccceecc-ccCCH-----------H----HHHHH---HhCCCCCcEEEEchHhccCCCCCC----HHHH---
Confidence 1235788885 35421 1 12211 11114799999999965432 221 1233
Q ss_pred HHHHHHHhhhcCCccccccccccCCCCC
Q 014902 331 VYKTLLNSTKKGGSGAGSLLWQLFPDGT 358 (416)
Q Consensus 331 ~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 358 (416)
.+.+.+ ....+|.++|.|.|+|.
T Consensus 528 -w~~~~~----~p~l~GgfiW~~~D~~~ 550 (1021)
T PRK10340 528 -QNVFYK----HDCIQGHYVWEWCDHGI 550 (1021)
T ss_pred -HHHHHh----CCceeEEeeeecCcccc
Confidence 233332 35699999999999754
No 19
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.84 E-value=6.7e-19 Score=174.81 Aligned_cols=310 Identities=13% Similarity=0.137 Sum_probs=203.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCC---CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP---SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 128 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~---g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 128 (416)
..++++|+++|+++|+++.|+ ...|+++.|.. +.+|+++++.+..+|++..++||.++|||+ ||+.
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRF----SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLf-HwDl------ 158 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRF----SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLF-HWDL------ 158 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEE----EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEe-cCCC------
Confidence 578999999999999999999 24698888753 458999999999999999999999999999 6875
Q ss_pred HHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCC-------------
Q 014902 129 YVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSD------------- 195 (416)
Q Consensus 129 y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~------------- 195 (416)
|++..+. -..|.++.+++.|++|++...++ |+| .|-.|.+.|||+....
T Consensus 159 -Pq~LeDe-------YgGwLn~~ivedF~~yA~~CF~~--------fGD--rVK~WiT~NEP~v~s~~gY~~G~~aPGrC 220 (524)
T KOG0626|consen 159 -PQALEDE-------YGGWLNPEIVEDFRDYADLCFQE--------FGD--RVKHWITFNEPNVFSIGGYDTGTKAPGRC 220 (524)
T ss_pred -CHHHHHH-------hccccCHHHHHHHHHHHHHHHHH--------hcc--cceeeEEecccceeeeehhccCCCCCCCC
Confidence 4444431 12588999999999999999999 999 7999999999994321
Q ss_pred ----------CCh-hHH--HHH----HHHHHHHhhhc-C--CCcEEEecccc-c-cCCCC-CCC------cCCCcCcccc
Q 014902 196 ----------PSG-DTL--QSW----IQEMAVYVKSI-D--AKHLVEIGLEG-F-YGPSA-PDR------AKFNPNSYAT 246 (416)
Q Consensus 196 ----------~~~-~~~--~~w----~~~~~~~Ir~~-d--p~~lV~~g~~g-~-~~~~~-~~~------~~~np~~~~~ 246 (416)
.++ +.+ ..+ ..++....|+. . -+-.|++.... + .+.+. ++. ...-...|..
T Consensus 221 s~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l 300 (524)
T KOG0626|consen 221 SKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFL 300 (524)
T ss_pred CcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhh
Confidence 011 111 111 12223334432 1 12244443311 1 11111 110 0000000100
Q ss_pred --cccchhh------------------hhhCCCCCcEEEEeecCCCcCCC----C-----------C--h----------
Q 014902 247 --QVGTDFI------------------RNHQTLGVDFASVHIYADSWISQ----T-----------I--S---------- 279 (416)
Q Consensus 247 --~~g~d~~------------------~~~~~~~iD~~s~H~Y~~~w~~~----~-----------~--~---------- 279 (416)
....|+. ........||+++++|....... . . .
T Consensus 301 ~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (524)
T KOG0626|consen 301 EPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLIGP 380 (524)
T ss_pred cccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccccc
Confidence 0001111 01124567999999984321100 0 0 0
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecCCccCCC-------CCChhHHHHHHHHHHHHHHHhhh-cCCcccc
Q 014902 280 ---DAHLQFTKSWMEAHIEDAEKY-LRMPVLFTEFGVSAKDT-------GYNTSFRDTLISSVYKTLLNSTK-KGGSGAG 347 (416)
Q Consensus 280 ---~~~~~~~~~~i~~~~~~a~~~-~~kPv~i~EfG~~~~~~-------g~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G 347 (416)
...+...+.-|+..+...+.. .+.|++|+|.|...... ...+..|..|++.++.++.++++ +|..+.|
T Consensus 381 ~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~G 460 (524)
T KOG0626|consen 381 KAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKG 460 (524)
T ss_pred cccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCceee
Confidence 001122344466666666654 46779999999987632 13577899999999999999987 7888999
Q ss_pred ccccccCCCCCCCCCC----CceEEeCCCc-CHHHHHHHHHHHHHhcccC
Q 014902 348 SLLWQLFPDGTDYMND----GYAIVLSKSP-STSNIISLHSTRIATFNSL 392 (416)
Q Consensus 348 ~~~W~~~~~g~~~~~d----g~~i~~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (416)
++.|++.|+ ++|.+ +||++++|.+ ...|.+|.++..++.+-..
T Consensus 461 Yf~WSLmDn--fEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 461 YFVWSLLDN--FEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred EEEeEcccc--hhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 999999999 88876 6778887643 2788999999999977654
No 20
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.84 E-value=4.3e-19 Score=194.98 Aligned_cols=244 Identities=14% Similarity=0.193 Sum_probs=157.2
Q ss_pred CCCc--EEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCC
Q 014902 14 DWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD 91 (416)
Q Consensus 14 ~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~ 91 (416)
.-|| |++++++|.+||+|++++|+|.+-.........+++.+++||+.||++|+|+||++.. ..+
T Consensus 330 ~~GfR~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHy-------------P~~ 396 (1027)
T PRK09525 330 DVGFRKVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHY-------------PNH 396 (1027)
T ss_pred eEEEEEEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCC-------------CCC
Confidence 4566 7888999999999999999998632222222457899999999999999999999432 112
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014902 92 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 92 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
.+++++|+++||+|+-.+.- .. .|+. + ......+++..+.+.+.++.+|.|
T Consensus 397 -------p~fydlcDe~GilV~dE~~~--e~-hg~~--~------------~~~~~~dp~~~~~~~~~~~~mV~R----- 447 (1027)
T PRK09525 397 -------PLWYELCDRYGLYVVDEANI--ET-HGMV--P------------MNRLSDDPRWLPAMSERVTRMVQR----- 447 (1027)
T ss_pred -------HHHHHHHHHcCCEEEEecCc--cc-cCCc--c------------ccCCCCCHHHHHHHHHHHHHHHHh-----
Confidence 24579999999999866531 00 1110 0 011345688889999999999999
Q ss_pred cccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccch
Q 014902 172 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTD 251 (416)
Q Consensus 172 g~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d 251 (416)
.+|||+|++|.++||+.... . .++|+..+|++||+++|+....+. .
T Consensus 448 ---drNHPSIi~WSlgNE~~~g~-----~----~~~l~~~~k~~DptRpV~y~~~~~-~--------------------- 493 (1027)
T PRK09525 448 ---DRNHPSIIIWSLGNESGHGA-----N----HDALYRWIKSNDPSRPVQYEGGGA-D--------------------- 493 (1027)
T ss_pred ---CCCCCEEEEEeCccCCCcCh-----h----HHHHHHHHHhhCCCCcEEECCCCC-C---------------------
Confidence 99999999999999986531 1 468889999999999998642110 0
Q ss_pred hhhhhCCCCCcEEEEeecCCC-cCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCCCCCChhHHHHHHHH
Q 014902 252 FIRNHQTLGVDFASVHIYADS-WISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISS 330 (416)
Q Consensus 252 ~~~~~~~~~iD~~s~H~Y~~~-w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~ 330 (416)
....|+++. +|+.. +..... ....+.+..|+.. .. .+||+++.|||-...++... ++.
T Consensus 494 ------~~~~Dv~~~-my~~~~~~~~~~-~~~~~~~~~~~~~-----~~-~~kP~i~cEY~Hamgn~~g~-------l~~ 552 (1027)
T PRK09525 494 ------TAATDIICP-MYARVDEDQPFP-AVPKWSIKKWISL-----PG-ETRPLILCEYAHAMGNSLGG-------FAK 552 (1027)
T ss_pred ------CCccccccC-CCCCcccccccc-ccchHHHHHHHhc-----CC-CCCCEEEEechhcccCcCcc-------HHH
Confidence 122455442 23221 110000 0000012222211 01 37999999999655431111 333
Q ss_pred HHHHHHHhhhcCCccccccccccCCCCC
Q 014902 331 VYKTLLNSTKKGGSGAGSLLWQLFPDGT 358 (416)
Q Consensus 331 ~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 358 (416)
..+.+.+ .....|.++|.|.|+|.
T Consensus 553 yw~~~~~----~~~~~GgfIW~w~Dqg~ 576 (1027)
T PRK09525 553 YWQAFRQ----YPRLQGGFIWDWVDQGL 576 (1027)
T ss_pred HHHHHhc----CCCeeEEeeEeccCcce
Confidence 3443432 35699999999998864
No 21
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.71 E-value=8.4e-16 Score=144.30 Aligned_cols=279 Identities=16% Similarity=0.290 Sum_probs=134.2
Q ss_pred cCCCCCCcEEEeCCeEE--ECCeEEEEEEeeccchhhh--h--cCCC-ChhHHHHHHHHHHHcCCCEEEEeeecCCCccc
Q 014902 10 REDDDWQMVQKQGNQFV--VNDQPFYVNGFNTYWLMVF--A--ADQS-TRGKVSELFHQASSAGLTVCRTWAFNDGQWRA 82 (416)
Q Consensus 10 ~~~~~~~fv~~~g~~f~--~~G~~~~~~G~N~~~~~~~--~--~~~~-~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~ 82 (416)
...++...|+++|++|. .+|++|+++|+.+.-.... . .+|. +.+..++|+..|+++|+|+||++..+.
T Consensus 3 ~~~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp----- 77 (314)
T PF03198_consen 3 SAAAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDP----- 77 (314)
T ss_dssp -SSTTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---T-----
T ss_pred chhccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCC-----
Confidence 34556678999999999 6999999999996432221 0 1332 567889999999999999999976531
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCH--HHHHHHHHHH
Q 014902 83 LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHT--TLKSYYKAHV 160 (416)
Q Consensus 83 ~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~--~~~~~~~~~v 160 (416)
. ..-|..+.+..+.||+||++|... .+.... .+| ..-..+.+..
T Consensus 78 ---~---------~nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~r-------------------~~P~~sw~~~l~~~~ 123 (314)
T PF03198_consen 78 ---S---------KNHDECMSAFADAGIYVILDLNTP---NGSINR-------------------SDPAPSWNTDLLDRY 123 (314)
T ss_dssp ---T---------S--HHHHHHHHHTT-EEEEES-BT---TBS--T-------------------TS------HHHHHHH
T ss_pred ---C---------CCHHHHHHHHHhCCCEEEEecCCC---CccccC-------------------CCCcCCCCHHHHHHH
Confidence 1 122677888999999999999753 111110 011 2222334444
Q ss_pred HHHHhcccccccccccCCCcEeEEEeccCCCCCCCC--ChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcC
Q 014902 161 KTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP--SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAK 238 (416)
Q Consensus 161 ~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~--~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~ 238 (416)
..++.. ++..|.++++-++||....... ...-.++.++.|.++||+...+ .|.+|-.. ....+. .
T Consensus 124 ~~vid~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsa---aD~~~~-r 190 (314)
T PF03198_consen 124 FAVIDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSA---ADDAEI-R 190 (314)
T ss_dssp HHHHHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE------TTT-H
T ss_pred HHHHHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEc---cCChhH-H
Confidence 556666 7888899999999998764322 1244667788899999987653 35555311 111100 0
Q ss_pred CCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCCCC
Q 014902 239 FNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTG 318 (416)
Q Consensus 239 ~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g 318 (416)
..-..| ...|. ....+||++++.|. |...++++. .. -..+.+.... +..|++++|||+....+.
T Consensus 191 ~~~a~Y-l~Cg~------~~~~iDf~g~N~Y~--WCg~Stf~~-----SG-y~~l~~~f~~-y~vPvffSEyGCn~~~pR 254 (314)
T PF03198_consen 191 QDLANY-LNCGD------DDERIDFFGLNSYE--WCGDSTFET-----SG-YDRLTKEFSN-YSVPVFFSEYGCNTVTPR 254 (314)
T ss_dssp HHHHHH-TTBTT-----------S-EEEEE------SS--HHH-----HS-HHHHHHHHTT--SS-EEEEEE---SSSS-
T ss_pred HHHHHH-hcCCC------cccccceeeeccce--ecCCCcccc-----cc-HHHHHHHhhC-CCCCeEEcccCCCCCCCc
Confidence 000001 01111 12479999999994 764444321 11 1223334444 799999999999876432
Q ss_pred -CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCCCCceEEeCCC
Q 014902 319 -YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYAIVLSKS 372 (416)
Q Consensus 319 -~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~i~~~~~ 372 (416)
+++ + .+++..-... ...|.+...|..+. .+||+|-.++
T Consensus 255 ~f~e---------v-~aly~~~Mt~-v~SGGivYEy~~e~-----n~yGlV~~~~ 293 (314)
T PF03198_consen 255 TFTE---------V-PALYSPEMTD-VWSGGIVYEYFQEA-----NNYGLVEISG 293 (314)
T ss_dssp --TH---------H-HHHTSHHHHT-TEEEEEES-SB--S-----SS--SEEE-T
T ss_pred cchH---------h-HHhhCccchh-heeceEEEEEeccC-----CceEEEEEcC
Confidence 222 1 1222221122 38888888887662 3578776443
No 22
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.63 E-value=2.8e-14 Score=137.62 Aligned_cols=240 Identities=18% Similarity=0.233 Sum_probs=141.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCC-CCCChHHHHHHHHHHHHHHHcCCEEEEecC--CCcCcCCChhhHHH
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSP-SVYDEEVFKALDFVISEAKKYKIRLILSLT--NNWDAYGGKAQYVK 131 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~-g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~--~~w~~~gg~~~y~~ 131 (416)
.++.|+.||+.|+|.||+=++.+. .. |..+ ++..-++...|+++||+|+|+|| +.|.+.|....-..
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P-------~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNP-------YDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA 95 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS--------TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT
T ss_pred CCCHHHHHHhcCCCeEEEEeccCC-------cccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc
Confidence 357899999999999999444322 22 4444 66777888899999999999998 45665433211112
Q ss_pred hhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCCCCCCC------ChhHHHHH
Q 014902 132 WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSDP------SGDTLQSW 204 (416)
Q Consensus 132 w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p-~I~~wel~NEp~~~~~~------~~~~~~~w 204 (416)
|. -.+-.+..++..+|.+.+++. +++.- .+-.++++||.+..... .-+.+.+.
T Consensus 96 W~------------~~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~l 155 (332)
T PF07745_consen 96 WA------------NLSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKL 155 (332)
T ss_dssp CT------------SSSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHH
T ss_pred CC------------CCCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHH
Confidence 32 113366778888898888888 66652 45568999999865321 13567788
Q ss_pred HHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhh--hhCCCCCcEEEEeecCCCcCCCCChhHH
Q 014902 205 IQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIR--NHQTLGVDFASVHIYADSWISQTISDAH 282 (416)
Q Consensus 205 ~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~--~~~~~~iD~~s~H~Y~~~w~~~~~~~~~ 282 (416)
++..+++||+.+|+..|.+....-.. ...+ .-|.. ....-..|++++++||. |.. +
T Consensus 156 l~ag~~AVr~~~p~~kV~lH~~~~~~----------~~~~-----~~~f~~l~~~g~d~DviGlSyYP~-w~~--~---- 213 (332)
T PF07745_consen 156 LNAGIKAVREVDPNIKVMLHLANGGD----------NDLY-----RWFFDNLKAAGVDFDVIGLSYYPF-WHG--T---- 213 (332)
T ss_dssp HHHHHHHHHTHSSTSEEEEEES-TTS----------HHHH-----HHHHHHHHHTTGG-SEEEEEE-ST-TST-------
T ss_pred HHHHHHHHHhcCCCCcEEEEECCCCc----------hHHH-----HHHHHHHHhcCCCcceEEEecCCC-Ccc--h----
Confidence 89999999999999999887532100 0000 01111 11235679999999997 643 1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCC----------------CC--CChhHHHHHHHHHHHHHHHhhhcCCc
Q 014902 283 LQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD----------------TG--YNTSFRDTLISSVYKTLLNSTKKGGS 344 (416)
Q Consensus 283 ~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~----------------~g--~~~~~r~~~~~~~~~~~~~~~~~~~~ 344 (416)
++.+..-| ....++++|||+|.|.|++... .+ .+.+-+..|++.+++.+. +... +.
T Consensus 214 l~~l~~~l----~~l~~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~-~~p~-~~ 287 (332)
T PF07745_consen 214 LEDLKNNL----NDLASRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVK-NVPN-GG 287 (332)
T ss_dssp HHHHHHHH----HHHHHHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHH-TS---TT
T ss_pred HHHHHHHH----HHHHHHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHH-Hhcc-CC
Confidence 22222222 2222337999999999987651 01 156678899988877653 2222 34
Q ss_pred cccccccc
Q 014902 345 GAGSLLWQ 352 (416)
Q Consensus 345 ~~G~~~W~ 352 (416)
+.|.+||.
T Consensus 288 g~GvfYWe 295 (332)
T PF07745_consen 288 GLGVFYWE 295 (332)
T ss_dssp EEEEEEE-
T ss_pred eEEEEeec
Confidence 89999993
No 23
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.6e-14 Score=153.63 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=119.5
Q ss_pred CCCCc--EEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCC
Q 014902 13 DDWQM--VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVY 90 (416)
Q Consensus 13 ~~~~f--v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~ 90 (416)
...|| |++..+.|.+||||++++|+|.|.....-......+.+++||..||++|+|+||+|.+. .
T Consensus 279 ~~iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP-------------~ 345 (808)
T COG3250 279 LRIGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYP-------------N 345 (808)
T ss_pred eeeccEEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCC-------------C
Confidence 34687 88888999999999999999987433322223356679999999999999999997431 2
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhccccc
Q 014902 91 DEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTF 170 (416)
Q Consensus 91 ~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~ 170 (416)
++ .++++|+++||.||-...-- | .| +..+++..+....-++.+++|
T Consensus 346 ~~-------~~ydLcDelGllV~~Ea~~~------------~---~~--------~~~~~~~~k~~~~~i~~mver---- 391 (808)
T COG3250 346 SE-------EFYDLCDELGLLVIDEAMIE------------T---HG--------MPDDPEWRKEVSEEVRRMVER---- 391 (808)
T ss_pred CH-------HHHHHHHHhCcEEEEecchh------------h---cC--------CCCCcchhHHHHHHHHHHHHh----
Confidence 22 45789999999998665421 1 12 125677888899999999999
Q ss_pred ccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEecccc
Q 014902 171 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEG 227 (416)
Q Consensus 171 tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g 227 (416)
-||||+|+.|.++||+.-... ...+...+|+.||++++..+...
T Consensus 392 ----~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 392 ----DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred ----ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccCcc
Confidence 899999999999999986432 34667889999999999887644
No 24
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.56 E-value=5.6e-13 Score=125.75 Aligned_cols=228 Identities=21% Similarity=0.355 Sum_probs=146.4
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE-ecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHH
Q 014902 80 WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL-SLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKA 158 (416)
Q Consensus 80 ~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil-~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~ 158 (416)
|..++|++|.+| ++.+|++++.|+++||++-- +|. |.. +.|.|.... ..++..+.+.+
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~--W~~-----~~P~W~~~~-----------~~~~~~~~~~~ 61 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTLV--WHS-----QTPDWVFNL-----------SKETLLARLEN 61 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEEe--ecc-----cCCHhhhcC-----------CHHHHHHHHHH
Confidence 678899999998 89999999999999999832 222 432 236776421 13567899999
Q ss_pred HHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC----C--hhH-HHHHHHHHHHHhhhcCCCcEEEeccccccCC
Q 014902 159 HVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP----S--GDT-LQSWIQEMAVYVKSIDAKHLVEIGLEGFYGP 231 (416)
Q Consensus 159 ~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~----~--~~~-~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~ 231 (416)
|++.+++| |++ .|..|+++|||...... + .+. -..|+....+.+|+.||+..+.+.. |+.
T Consensus 62 ~i~~v~~r--------y~g--~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Nd---y~~ 128 (254)
T smart00633 62 HIKTVVGR--------YKG--KIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYND---YNT 128 (254)
T ss_pred HHHHHHHH--------hCC--cceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEec---cCC
Confidence 99999999 998 58899999999864311 0 000 1268889999999999998887753 111
Q ss_pred CCCCCcCCCcCcccccccchhhhhh--CCCCCcEEEE--eecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEE
Q 014902 232 SAPDRAKFNPNSYATQVGTDFIRNH--QTLGVDFASV--HIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLF 307 (416)
Q Consensus 232 ~~~~~~~~np~~~~~~~g~d~~~~~--~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i 307 (416)
..+.. ....+ ..+.... ..-.||-+++ |.+... .+ . ..+...++...+ .|+||.|
T Consensus 129 ~~~~~---k~~~~-----~~~v~~l~~~g~~iDgiGlQ~H~~~~~----~~----~----~~~~~~l~~~~~-~g~pi~i 187 (254)
T smart00633 129 EEPNA---KRQAI-----YELVKKLKAKGVPIDGIGLQSHLSLGS----PN----I----AEIRAALDRFAS-LGLEIQI 187 (254)
T ss_pred cCccH---HHHHH-----HHHHHHHHHCCCccceeeeeeeecCCC----CC----H----HHHHHHHHHHHH-cCCceEE
Confidence 10000 00001 1122111 2224788877 443211 11 1 123444444455 7999999
Q ss_pred EecCCccCCCCCChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCCCCCCC--CceEEeCC
Q 014902 308 TEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND--GYAIVLSK 371 (416)
Q Consensus 308 ~EfG~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d--g~~i~~~~ 371 (416)
||+++.... +.+.+.++++.++..+++. ..+.|.++|.+.+. ..|.. ..+++..+
T Consensus 188 TE~dv~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~--~~W~~~~~~~L~d~~ 244 (254)
T smart00633 188 TELDISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDK--YSWLDGGAPLLFDAN 244 (254)
T ss_pred EEeecCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC--CcccCCCCceeECCC
Confidence 999997653 3367888888888776643 35889999999877 45543 23455433
No 25
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.48 E-value=1.6e-12 Score=124.65 Aligned_cols=167 Identities=22% Similarity=0.342 Sum_probs=101.2
Q ss_pred CCeEE-ECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCC-c--------ccc-ccCC---
Q 014902 22 GNQFV-VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQ-W--------RAL-QTSP--- 87 (416)
Q Consensus 22 g~~f~-~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~-~--------~~~-~~~~--- 87 (416)
+.+|+ .||+||++.|...|-+... .++++++..|+..++.|+|+||+-++.... . ..+ ...+
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~----~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHR----LTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH------HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHHHHHhhC----CCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 44677 6999999999875422222 236788999999999999999996654210 0 111 1111
Q ss_pred --CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH--HHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHH
Q 014902 88 --SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY--VKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTV 163 (416)
Q Consensus 88 --g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y--~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~ 163 (416)
..+|++.|+.+|++|+.|.++||.+.|.+. |.. .| ..|.. | .+.-..+..++|++.|
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~-----~~~~~~Wg~--~----------~~~m~~e~~~~Y~~yv 138 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGC-----PYVPGTWGF--G----------PNIMPPENAERYGRYV 138 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HH-----HHH-------------------TTSS-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECC-----ccccccccc--c----------ccCCCHHHHHHHHHHH
Confidence 237899999999999999999999987765 411 11 12421 0 0111256678899999
Q ss_pred HhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEecc
Q 014902 164 LNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 225 (416)
Q Consensus 164 v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 225 (416)
++| |+.-|.|+ |.|+||- ... ....+..++|++.||+.||.+|+|+..
T Consensus 139 ~~R--------y~~~~Nvi-W~l~gd~-~~~----~~~~~~w~~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 139 VAR--------YGAYPNVI-WILGGDY-FDT----EKTRADWDAMARGIKENDPYQLITIHP 186 (289)
T ss_dssp HHH--------HTT-SSEE-EEEESSS---T----TSSHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred HHH--------HhcCCCCE-EEecCcc-CCC----CcCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 999 99999888 9999999 211 234456689999999999999999875
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.43 E-value=6.4e-12 Score=121.97 Aligned_cols=168 Identities=16% Similarity=0.285 Sum_probs=108.1
Q ss_pred eEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHH
Q 014902 24 QFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVIS 103 (416)
Q Consensus 24 ~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~ 103 (416)
+|++||||+++.+--.|+...- ++.+++.|+.||++|+|+|-+.++ |...++.+|+||-+....|+++|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p------~~~W~~~l~k~ka~G~n~v~~yv~----W~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIP------PEYWRDRLQKMKAAGLNTVSTYVP----WNLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE------HHHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccCC------hhHHHHHHHHHHhCCcceEEEecc----ccccCCCCCcccccchhhHHHHHH
Confidence 5899999999999888765432 689999999999999999999764 777889999999888889999999
Q ss_pred HHHHcCCEEEEecC----CCcCcCCChhhHHHhhhhc-CCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCC
Q 014902 104 EAKKYKIRLILSLT----NNWDAYGGKAQYVKWGKAA-GLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 178 (416)
Q Consensus 104 ~a~~~Gi~vil~l~----~~w~~~gg~~~y~~w~~~~-G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~ 178 (416)
.|+++||+|||-+- .-|. +||. |.|.... +.... -.|+...+..++|++.|++.+- ...+++.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~~-~gG~---P~Wl~~~~~~~~R-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEWD-NGGL---PAWLLRKPDIRLR-----TNDPPFLEAVERWYRALAKIIK---PLQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTBG-GGG-----GGGGGSTTS-SS-----SS-HHHHHHHHHHHHHHHHHHG---GGBGGGT
T ss_pred HHHHcCcEEEecccceeccccc-chhh---hhhhhcccccccc-----ccchhHHHHHHHHHHHHHHHHH---hhhhcCC
Confidence 99999999998874 2233 4676 5676543 22111 2356666666666666655522 1234554
Q ss_pred CcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCC
Q 014902 179 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 218 (416)
Q Consensus 179 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 218 (416)
-.|++.+|-||..... .-.++++.+.+..++.-++
T Consensus 139 GpII~vQvENEyg~~~-----~~~~Y~~~l~~~~~~~g~~ 173 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYG-----TDRAYMEALKDAYRDWGID 173 (319)
T ss_dssp SSEEEEEESSSGGCTS-----S-HHHHHHHHHHHHHTT-S
T ss_pred CceehhhhhhhhCCCc-----ccHhHHHHHHHHHHHhhCc
Confidence 5699999999998332 1234555555555554444
No 27
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.38 E-value=5.6e-13 Score=104.67 Aligned_cols=75 Identities=31% Similarity=0.624 Sum_probs=47.3
Q ss_pred ccCCCcEeEEEeccC-CCCCC--------CCChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCccc
Q 014902 175 YKNDPTIFAWELMNE-PRCTS--------DPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYA 245 (416)
Q Consensus 175 y~~~p~I~~wel~NE-p~~~~--------~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~ 245 (416)
|+++|+|++|+|+|| |.... ....+.+.+|+++++++||++||+++||+|..+. . .
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~-----------~- 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---D-----------W- 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S---------------T-
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---C-----------H-
Confidence 999999999999999 76221 0123678899999999999999999999885321 0 0
Q ss_pred ccccchhhhhhCCCCCcEEEEeec
Q 014902 246 TQVGTDFIRNHQTLGVDFASVHIY 269 (416)
Q Consensus 246 ~~~g~d~~~~~~~~~iD~~s~H~Y 269 (416)
..+. ....+.+||++||.|
T Consensus 70 ----~~~~-~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 ----EDLE-QLQAENLDVISFHPY 88 (88)
T ss_dssp ----THHH-HS--TT-SSEEB-EE
T ss_pred ----HHHH-HhchhcCCEEeeecC
Confidence 1122 223589999999998
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=99.34 E-value=5.9e-11 Score=125.30 Aligned_cols=174 Identities=21% Similarity=0.317 Sum_probs=130.7
Q ss_pred cEEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHH
Q 014902 17 MVQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK 96 (416)
Q Consensus 17 fv~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~ 96 (416)
-|+.++..|.+||+|+.+.+-.+|+... .++.|++.|+.||++|+|+|=++++ |...||.+|.||-+...
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~GlNtV~tYV~----Wn~HEp~~G~~dF~G~~ 98 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPSPGNYYFEDRY 98 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCCCeEEEEec----ccccCCCCCeeeccchH
Confidence 3899999999999999999999887542 3689999999999999999999876 88889999999988899
Q ss_pred HHHHHHHHHHHcCCEEEEecCC----CcCcCCChhhHHHhhhh-cCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014902 97 ALDFVISEAKKYKIRLILSLTN----NWDAYGGKAQYVKWGKA-AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 97 ~lD~~l~~a~~~Gi~vil~l~~----~w~~~gg~~~y~~w~~~-~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
.|.++|+.|++.||+||+-+-. -|+ +||. |.|... .|+.+. =+|+...++.++|+++|+.++-. .
T Consensus 99 DL~~Fl~la~e~GLyvilRpGPYIcAEw~-~GGl---P~WL~~~~~i~~R-----s~d~~fl~~v~~~~~~l~~~l~~-~ 168 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRIGPYICAEWN-FGGF---PVWLKYVPGIEFR-----TDNGPFKAAMQKFTEKIVDMMKS-E 168 (840)
T ss_pred HHHHHHHHHHHcCCEEEecCCcceeeeec-CCCC---chhhhcCCCcccc-----cCCHHHHHHHHHHHHHHHHHHhh-c
Confidence 9999999999999999998742 354 5887 567642 232211 23677888888888888877300 1
Q ss_pred cccccCCCcEeEEEeccCCCCCCC---CChhHHHHHHHHHHH
Q 014902 172 NLTYKNDPTIFAWELMNEPRCTSD---PSGDTLQSWIQEMAV 210 (416)
Q Consensus 172 g~~y~~~p~I~~wel~NEp~~~~~---~~~~~~~~w~~~~~~ 210 (416)
+.-+++--.|++.+|-||-..... ..+..+.+|+++|+.
T Consensus 169 ~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~ 210 (840)
T PLN03059 169 KLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAV 210 (840)
T ss_pred ceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHH
Confidence 122344446889999999875421 123567777776653
No 29
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.28 E-value=4.1e-11 Score=123.33 Aligned_cols=297 Identities=15% Similarity=0.186 Sum_probs=137.3
Q ss_pred ChhHHHHHHHHHH-HcCCCEEEEee-ecCCCccccc-cCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCc--C
Q 014902 51 TRGKVSELFHQAS-SAGLTVCRTWA-FNDGQWRALQ-TSPS--VYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA--Y 123 (416)
Q Consensus 51 ~~~~~~~dl~~~~-~~G~n~vRi~~-~~~~~~~~~~-~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~--~ 123 (416)
-+..+++.|..++ ++|+..||+|. |+|+.-...+ ...| .|| |..+|+++|...++||+++|.|.-.-.. .
T Consensus 37 l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~~~~~ 113 (486)
T PF01229_consen 37 LRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFMPMALAS 113 (486)
T ss_dssp GBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGGBS
T ss_pred hhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEechhhhcC
Confidence 3577888888886 99999999975 5443211111 1222 266 9999999999999999999998621110 0
Q ss_pred CChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEe--EEEeccCCCCCCCC---Ch
Q 014902 124 GGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIF--AWELMNEPRCTSDP---SG 198 (416)
Q Consensus 124 gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~--~wel~NEp~~~~~~---~~ 198 (416)
+....+ .| ....+.|.-.+.+.++++.+++|... +|+.+ .|- .||++|||+..... ..
T Consensus 114 ~~~~~~-~~-----------~~~~~pp~~~~~W~~lv~~~~~h~~~----RYG~~-ev~~W~fEiWNEPd~~~f~~~~~~ 176 (486)
T PF01229_consen 114 GYQTVF-WY-----------KGNISPPKDYEKWRDLVRAFARHYID----RYGIE-EVSTWYFEIWNEPDLKDFWWDGTP 176 (486)
T ss_dssp S--EET-TT-----------TEE-S-BS-HHHHHHHHHHHHHHHHH----HHHHH-HHTTSEEEESS-TTSTTTSGGG-H
T ss_pred CCCccc-cc-----------cCCcCCcccHHHHHHHHHHHHHHHHh----hcCCc-cccceeEEeCcCCCcccccCCCCH
Confidence 100000 00 00111233345555555444444100 05532 222 47999999985422 22
Q ss_pred hHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCCCC-
Q 014902 199 DTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQT- 277 (416)
Q Consensus 199 ~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~- 277 (416)
..+.+.++.++.+||+++|+..|.-. ++... . .. |- ....+|..... ..+||+|+|.|+.......
T Consensus 177 ~ey~~ly~~~~~~iK~~~p~~~vGGp--~~~~~-~-------~~-~~-~~~l~~~~~~~-~~~DfiS~H~y~~~~~~~~~ 243 (486)
T PF01229_consen 177 EEYFELYDATARAIKAVDPELKVGGP--AFAWA-Y-------DE-WC-EDFLEFCKGNN-CPLDFISFHSYGTDSAEDIN 243 (486)
T ss_dssp HHHHHHHHHHHHHHHHH-TTSEEEEE--EEETT---------TH-HH-HHHHHHHHHCT----SEEEEEEE-BESESE-S
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccCc--ccccc-H-------HH-HH-HHHHHHHhcCC-CCCCEEEEEecccccccccc
Confidence 45778889999999999999887521 11100 0 00 10 11123333222 4689999999986422110
Q ss_pred -ChhHHHHHHHH---HHHHHHHHHHH--hCCCcEEEEecCCccCCCC--CChhHHHHHHHHHHHHHHHhhhcCCcccccc
Q 014902 278 -ISDAHLQFTKS---WMEAHIEDAEK--YLRMPVLFTEFGVSAKDTG--YNTSFRDTLISSVYKTLLNSTKKGGSGAGSL 349 (416)
Q Consensus 278 -~~~~~~~~~~~---~i~~~~~~a~~--~~~kPv~i~EfG~~~~~~g--~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~ 349 (416)
.....+..... -+......... ..++|+.++||+....... .+...+.+|+-. .+++.. +....+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~--~~~l~~~s 318 (486)
T PF01229_consen 244 ENMYERIEDSRRLFPELKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSND--GAFLDSFS 318 (486)
T ss_dssp S-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHG--GGT-SEEE
T ss_pred hhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHH---HHHHhh--hhhhhhhh
Confidence 10011111111 12222122222 1367899999987654311 122245555433 123322 22255678
Q ss_pred ccccCCC----C--CCCCCCCceEEeCCCcCHHHHHHHHHHHHHhcc
Q 014902 350 LWQLFPD----G--TDYMNDGYAIVLSKSPSTSNIISLHSTRIATFN 390 (416)
Q Consensus 350 ~W~~~~~----g--~~~~~dg~~i~~~~~~~~~~~~~~~~~~~~~~~ 390 (416)
+|.+.+. + ..+...|||+.... .|.|+....+.-|.
T Consensus 319 ywt~sD~Fee~~~~~~pf~ggfGLlt~~-----gI~KPa~~A~~~L~ 360 (486)
T PF01229_consen 319 YWTFSDRFEENGTPRKPFHGGFGLLTKL-----GIPKPAYYAFQLLN 360 (486)
T ss_dssp ES-SBS---TTSS-SSSSSS-S-SEECC-----CEE-HHHHHHHHHT
T ss_pred ccchhhhhhccCCCCCceecchhhhhcc-----CCCchHHHHHHHHH
Confidence 8999763 1 12344689988755 35555555544333
No 30
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.5e-09 Score=100.11 Aligned_cols=271 Identities=17% Similarity=0.236 Sum_probs=152.3
Q ss_pred EEEEeeccchhhhhcCC----CChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHc
Q 014902 33 YVNGFNTYWLMVFAADQ----STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY 108 (416)
Q Consensus 33 ~~~G~N~~~~~~~~~~~----~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~ 108 (416)
++.|+..-++....... .+....++.|+.+|.+|+|.||+=++.+.--..-++-.|..+ -++..-++-..|++.
T Consensus 39 FikGaDis~l~~lE~~Gvkf~d~ng~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnn--D~~k~ieiakRAk~~ 116 (403)
T COG3867 39 FIKGADISSLIELENSGVKFFDTNGVRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNL 116 (403)
T ss_pred hhccccHHHHHHHHHcCceEEccCChHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcc--hHHHHHHHHHHHHhc
Confidence 45666665554433211 122345677999999999999995544321000011112222 245555677889999
Q ss_pred CCEEEEecC--CCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEE
Q 014902 109 KIRLILSLT--NNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWE 185 (416)
Q Consensus 109 Gi~vil~l~--~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p-~I~~we 185 (416)
||||++++| ++|.+.+-...-..|... .-...+++.-.|-+.+++. +++.- .+-+.+
T Consensus 117 GmKVl~dFHYSDfwaDPakQ~kPkaW~~l------------~fe~lk~avy~yTk~~l~~--------m~~eGi~pdmVQ 176 (403)
T COG3867 117 GMKVLLDFHYSDFWADPAKQKKPKAWENL------------NFEQLKKAVYSYTKYVLTT--------MKKEGILPDMVQ 176 (403)
T ss_pred CcEEEeeccchhhccChhhcCCcHHhhhc------------CHHHHHHHHHHHHHHHHHH--------HHHcCCCccceE
Confidence 999999998 456663321111234211 1123455555666666666 55542 345679
Q ss_pred eccCCCCCCC-CCh-----hHHHHHHHHHHHHhhhcCCCcEEEeccc-cccCCCCCCCcCCCcCcccccccchhhhh-hC
Q 014902 186 LMNEPRCTSD-PSG-----DTLQSWIQEMAVYVKSIDAKHLVEIGLE-GFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQ 257 (416)
Q Consensus 186 l~NEp~~~~~-~~~-----~~~~~w~~~~~~~Ir~~dp~~lV~~g~~-g~~~~~~~~~~~~np~~~~~~~g~d~~~~-~~ 257 (416)
++||-+.... ++| +.+.+.+++-+++||+.+|+.+|.+... |- ++..|. .-|... ..
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~-----------~n~~y~----~~fd~ltk~ 241 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGE-----------NNSLYR----WIFDELTKR 241 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCC-----------CCchhh----HHHHHHHHc
Confidence 9999986542 222 3455667788999999999999987642 11 111120 001110 12
Q ss_pred CCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCcc---CCC-------------CC--
Q 014902 258 TLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSA---KDT-------------GY-- 319 (416)
Q Consensus 258 ~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~---~~~-------------g~-- 319 (416)
.-..|+++.-+||. |..+ +..+..-|. ..|.+ ++|-|+|.|.+... +.. ++
T Consensus 242 nvdfDVig~SyYpy-Whgt------l~nL~~nl~---dia~r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypi 310 (403)
T COG3867 242 NVDFDVIGSSYYPY-WHGT------LNNLTTNLN---DIASR-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPI 310 (403)
T ss_pred CCCceEEeeecccc-ccCc------HHHHHhHHH---HHHHH-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCce
Confidence 23567889999997 7432 122221122 12344 89999999998732 110 11
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcCCcccccccccc
Q 014902 320 NTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQL 353 (416)
Q Consensus 320 ~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~ 353 (416)
+..-|..+++.+.+.+..-- .+.+.|.|||.=
T Consensus 311 tVQGQat~vrDvie~V~nvp--~~~GlGvFYWEp 342 (403)
T COG3867 311 TVQGQATFVRDVIEAVKNVP--KSNGLGVFYWEP 342 (403)
T ss_pred EEechhhHHHHHHHHHHhCC--CCCceEEEEecc
Confidence 23456778887777664321 223688999964
No 31
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=9.8e-11 Score=117.77 Aligned_cols=114 Identities=29% Similarity=0.314 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccc----cCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQ----TSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~----~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
.++++..|+++|+|+||+... |-.++ ..|.......+..||++|.+|+++||+|+|++|.. .|+....
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~----~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~---~~~~~~~- 146 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIG----YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGY---PGGNNGH- 146 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccc----hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEeccc---CCCCCCc-
Confidence 389999999999999999321 11112 23444434556699999999999999999999953 1222110
Q ss_pred HhhhhcCCCCCCCcCcCCC-HHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCC
Q 014902 131 KWGKAAGLNLTSDDEFFSH-TTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 192 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~-~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~ 192 (416)
........|.. ...++.+.+.++.+++| |++.++|+++++.|||+.
T Consensus 147 --------~~s~~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 147 --------EHSGYTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred --------CcccccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 00011123333 45679999999999999 999999999999999996
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=8.4e-10 Score=114.96 Aligned_cols=175 Identities=18% Similarity=0.297 Sum_probs=125.8
Q ss_pred EeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHH
Q 014902 20 KQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALD 99 (416)
Q Consensus 20 ~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD 99 (416)
.++..+.++|+++.+.|.-++... ..++.++++|+.||++|+|+||+-.| .|..++|..|.|+ |..+|
T Consensus 3 ~~~~~~~~dg~~~~l~gG~y~p~~------~p~~~w~ddl~~mk~~G~N~V~ig~f---aW~~~eP~eG~fd---f~~~D 70 (673)
T COG1874 3 YDGYSFIRDGRRILLYGGDYYPER------WPRETWMDDLRKMKALGLNTVRIGYF---AWNLHEPEEGKFD---FTWLD 70 (673)
T ss_pred ccccceeeCCceeEEeccccChHH------CCHHHHHHHHHHHHHhCCCeeEeeeE---EeeccCccccccC---cccch
Confidence 356678899999999999875432 23588999999999999999999433 4889999999999 44666
Q ss_pred HH-HHHHHHcCCEEEEecCCCcCcCCChh-----hHHHhhhhc--CC---CCCCCcCcCCCHHHHHHHHHHHHHHHhccc
Q 014902 100 FV-ISEAKKYKIRLILSLTNNWDAYGGKA-----QYVKWGKAA--GL---NLTSDDEFFSHTTLKSYYKAHVKTVLNRVN 168 (416)
Q Consensus 100 ~~-l~~a~~~Gi~vil~l~~~w~~~gg~~-----~y~~w~~~~--G~---~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N 168 (416)
.. ++.|.+.||++|+.... .|+.+ .||.|.... |. +...+.-.++++-.++....+++.+.+|.
T Consensus 71 ~~~l~~a~~~Gl~vil~t~P----~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~- 145 (673)
T COG1874 71 EIFLERAYKAGLYVILRTGP----TGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL- 145 (673)
T ss_pred HHHHHHHHhcCceEEEecCC----CCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH-
Confidence 66 99999999999998742 12221 233332211 10 11123456777766777777777788885
Q ss_pred ccccccccCCCcEeEEEeccCCCCCC---CCChhHHHHHHHHHHHHhhhcCC
Q 014902 169 TFTNLTYKNDPTIFAWELMNEPRCTS---DPSGDTLQSWIQEMAVYVKSIDA 217 (416)
Q Consensus 169 ~~tg~~y~~~p~I~~wel~NEp~~~~---~~~~~~~~~w~~~~~~~Ir~~dp 217 (416)
|+++|+|++|.+-||-.+.. ..+...++.|+++-+..|+.++.
T Consensus 146 ------~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~ 191 (673)
T COG1874 146 ------YGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNE 191 (673)
T ss_pred ------hccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhh
Confidence 89999999999999988732 12345677798887766666543
No 33
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.99 E-value=1.2e-08 Score=99.43 Aligned_cols=247 Identities=18% Similarity=0.329 Sum_probs=149.4
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEe-cCCCcCcCCChhhHHHhhhhcC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS-LTNNWDAYGGKAQYVKWGKAAG 137 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~-l~~~w~~~gg~~~y~~w~~~~G 137 (416)
...+-..-+|.+=. -++.-|..+++.+|.+| ++..|.+++.|+++||+|--- |. |.. +-|.|....
T Consensus 27 ~~~~~~~~Fn~~t~--eN~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~Lv--W~~-----~~P~w~~~~- 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTP--ENEMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTLV--WHS-----QTPDWVFNL- 93 (320)
T ss_dssp HHHHHHHH-SEEEE--SSTTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEEE--ESS-----SS-HHHHTS-
T ss_pred HHHHHHHhCCeeee--ccccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeEE--Ecc-----cccceeeec-
Confidence 44444455786644 12334788899999998 888999999999999998521 11 321 236777532
Q ss_pred CCCCCCcCcCCCH---HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC-Ch-------hHH-HHHH
Q 014902 138 LNLTSDDEFFSHT---TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-SG-------DTL-QSWI 205 (416)
Q Consensus 138 ~~~~~~~~~~~~~---~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~-~~-------~~~-~~w~ 205 (416)
.-++.. ..++...++++.+++| |++...|.+|++.|||...... .+ +.+ ..++
T Consensus 94 -------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi 158 (320)
T PF00331_consen 94 -------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYI 158 (320)
T ss_dssp -------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHH
T ss_pred -------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHH
Confidence 012222 3788999999999999 9987789999999999876421 00 111 2478
Q ss_pred HHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhh--hCCCCCcEEEE--eecCCCcCCCCChhH
Q 014902 206 QEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN--HQTLGVDFASV--HIYADSWISQTISDA 281 (416)
Q Consensus 206 ~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~--~~~~~iD~~s~--H~Y~~~w~~~~~~~~ 281 (416)
..+.+..|+.+|+....+.. |+...+.. ...+ ...+.. ...-.||-+++ |+-....
T Consensus 159 ~~aF~~A~~~~P~a~L~~ND---y~~~~~~k----~~~~-----~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-------- 218 (320)
T PF00331_consen 159 ADAFRAAREADPNAKLFYND---YNIESPAK----RDAY-----LNLVKDLKARGVPIDGIGLQSHFDAGYP-------- 218 (320)
T ss_dssp HHHHHHHHHHHTTSEEEEEE---SSTTSTHH----HHHH-----HHHHHHHHHTTHCS-EEEEEEEEETTSS--------
T ss_pred HHHHHHHHHhCCCcEEEecc---ccccchHH----HHHH-----HHHHHHHHhCCCccceechhhccCCCCC--------
Confidence 88899999999998877653 11111000 0000 011111 12234777776 5544321
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCCCCC---ChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCCCC
Q 014902 282 HLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGY---NTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPDGT 358 (416)
Q Consensus 282 ~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~---~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 358 (416)
..-|...++.... .|+||.|||+.+....... .++.+..+++.++..+++.-.. .+.|..+|.+.+.
T Consensus 219 -----~~~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~-- 288 (320)
T PF00331_consen 219 -----PEQIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDG-- 288 (320)
T ss_dssp -----HHHHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTT--
T ss_pred -----HHHHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCC--
Confidence 1223444444555 8999999999988765221 2556777887777766653111 5999999999987
Q ss_pred CCCCC
Q 014902 359 DYMND 363 (416)
Q Consensus 359 ~~~~d 363 (416)
..|..
T Consensus 289 ~sW~~ 293 (320)
T PF00331_consen 289 YSWRP 293 (320)
T ss_dssp GSTTG
T ss_pred CcccC
Confidence 55533
No 34
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2.8e-07 Score=91.90 Aligned_cols=118 Identities=21% Similarity=0.409 Sum_probs=87.0
Q ss_pred EEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHH
Q 014902 25 FVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISE 104 (416)
Q Consensus 25 f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~ 104 (416)
|.+||.|++++|.|.+-...+- +-.+-+.++-.|+..++.|+|++|+|.. |.|.. |++...
T Consensus 330 fkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYEs------d~FY~l 390 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYES------DYFYQL 390 (867)
T ss_pred EEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHHHHhCcceEEEecC------------ccccc------hhHHHH
Confidence 5689999999999954332222 2223456777899999999999999963 34432 566889
Q ss_pred HHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEE
Q 014902 105 AKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW 184 (416)
Q Consensus 105 a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~w 184 (416)
|.+.||.| |++. | .+. +-+.++.+..+..++-++.=+.| .+.||+|+.|
T Consensus 391 ad~lGilV-------WQD~--M-----FAC---------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviIf 439 (867)
T KOG2230|consen 391 ADSLGILV-------WQDM--M-----FAC---------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVIIF 439 (867)
T ss_pred hhhcccee-------hhhh--H-----HHh---------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEEE
Confidence 99999999 6652 1 011 12446777777788888888999 8999999999
Q ss_pred EeccCCCC
Q 014902 185 ELMNEPRC 192 (416)
Q Consensus 185 el~NEp~~ 192 (416)
.--||-..
T Consensus 440 sgNNENEa 447 (867)
T KOG2230|consen 440 SGNNENEA 447 (867)
T ss_pred eCCCccHH
Confidence 99999764
No 35
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.2e-07 Score=96.80 Aligned_cols=152 Identities=21% Similarity=0.332 Sum_probs=118.5
Q ss_pred EEEeCCeEEECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHH
Q 014902 18 VQKQGNQFVVNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA 97 (416)
Q Consensus 18 v~~~g~~f~~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~ 97 (416)
|+-++.+|.+||+++.+.+-..||+.. .++.+++-++.+|+.|+|+|-+++| |...+|.+|.|+-++--.
T Consensus 20 v~yd~~~~~idG~r~~~isGsIHY~R~------~pe~W~~~i~k~k~~Gln~IqtYVf----Wn~Hep~~g~y~FsG~~D 89 (649)
T KOG0496|consen 20 VTYDKRSLLIDGQRFILISGSIHYPRS------TPEMWPDLIKKAKAGGLNVIQTYVF----WNLHEPSPGKYDFSGRYD 89 (649)
T ss_pred EeccccceeecCCeeEEEEeccccccC------ChhhhHHHHHHHHhcCCceeeeeee----cccccCCCCcccccchhH
Confidence 667788999999999999998887643 3689999999999999999999887 777899999998777777
Q ss_pred HHHHHHHHHHcCCEEEEecCC----CcCcCCChhhHHHhhhh-cCCCCCCCcCcC-CCHHHHHHHHHHHHHHHhcccccc
Q 014902 98 LDFVISEAKKYKIRLILSLTN----NWDAYGGKAQYVKWGKA-AGLNLTSDDEFF-SHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 98 lD~~l~~a~~~Gi~vil~l~~----~w~~~gg~~~y~~w~~~-~G~~~~~~~~~~-~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
|-++|.+|++.|++|++-+-. -|. +||.| -|.+. .|+ .|- .|+..+...++|++.|+.+.+
T Consensus 90 lvkFikl~~~~GLyv~LRiGPyIcaEw~-~GG~P---~wL~~~pg~------~~Rt~nepfk~~~~~~~~~iv~~mk--- 156 (649)
T KOG0496|consen 90 LVKFIKLIHKAGLYVILRIGPYICAEWN-FGGLP---WWLRNVPGI------VFRTDNEPFKAEMERWTTKIVPMMK--- 156 (649)
T ss_pred HHHHHHHHHHCCeEEEecCCCeEEeccc-CCCcc---hhhhhCCce------EEecCChHHHHHHHHHHHHHHHHHH---
Confidence 778899999999999998852 354 58875 34432 121 222 367788899999999998654
Q ss_pred cccccCCCcEeEEEeccCCCC
Q 014902 172 NLTYKNDPTIFAWELMNEPRC 192 (416)
Q Consensus 172 g~~y~~~p~I~~wel~NEp~~ 192 (416)
..-|++---|++-++-||-..
T Consensus 157 ~L~~~qGGPIIl~QIENEYG~ 177 (649)
T KOG0496|consen 157 KLFASQGGPIILVQIENEYGN 177 (649)
T ss_pred HHHhhcCCCEEEEEeechhhH
Confidence 333455445778999999883
No 36
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=4.2e-06 Score=78.98 Aligned_cols=223 Identities=21% Similarity=0.313 Sum_probs=130.8
Q ss_pred CCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE-ecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHH
Q 014902 78 GQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL-SLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYY 156 (416)
Q Consensus 78 ~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil-~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~ 156 (416)
.-|..++|++|.|+ |+.-|.+++-|++|||.+=- +|. |.. |.|.|..... .+-+...+..
T Consensus 67 mKwe~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhGHtLv--W~~-----q~P~W~~~~e---------~~~~~~~~~~ 127 (345)
T COG3693 67 MKWEAIEPERGRFN---FEAADAIANFARKHNMPLHGHTLV--WHS-----QVPDWLFGDE---------LSKEALAKMV 127 (345)
T ss_pred cccccccCCCCccC---ccchHHHHHHHHHcCCeeccceee--ecc-----cCCchhhccc---------cChHHHHHHH
Confidence 34888999999998 88889999999999998721 111 221 3466653110 3447789999
Q ss_pred HHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC-------ChhHHHHHHHHHHHHhhhcCCCcEEEecccccc
Q 014902 157 KAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-------SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFY 229 (416)
Q Consensus 157 ~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~-------~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~ 229 (416)
++++..++.| |++ .+.+|++.|||-..... .+-.-.+|++......|+.||+....+.. |
T Consensus 128 e~hI~tV~~r--------Ykg--~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ND---Y 194 (345)
T COG3693 128 EEHIKTVVGR--------YKG--SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIND---Y 194 (345)
T ss_pred HHHHHHHHHh--------ccC--ceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEeec---c
Confidence 9999999999 999 59999999999873210 01122356777788889999997665542 1
Q ss_pred CCCCCCCcCCCcCcccccccchhhh------hhCCCCCcEEEE--eecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhC
Q 014902 230 GPSAPDRAKFNPNSYATQVGTDFIR------NHQTLGVDFASV--HIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYL 301 (416)
Q Consensus 230 ~~~~~~~~~~np~~~~~~~g~d~~~------~~~~~~iD~~s~--H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~ 301 (416)
+.. .+|. -.++.. ....-.||-+++ |+=.. |. +. +....-+. ...+ .
T Consensus 195 ~ie------~~~~------kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~-~~---~~----~~~~~a~~----~~~k-~ 249 (345)
T COG3693 195 SIE------GNPA------KRNYVLNLIEELKEKGAPIDGIGIQSHFSGD-GP---SI----EKMRAALL----KFSK-L 249 (345)
T ss_pred ccc------CChH------HHHHHHHHHHHHHHCCCCccceeeeeeecCC-CC---CH----HHHHHHHH----HHhh-c
Confidence 111 1221 011111 112345777665 63222 21 11 11111121 2223 6
Q ss_pred CCcEEEEecCCccCCCCCChhHHHHHHHH-----HHHHHHHhhhcCCccccccccccCCCCCCCCCC
Q 014902 302 RMPVLFTEFGVSAKDTGYNTSFRDTLISS-----VYKTLLNSTKKGGSGAGSLLWQLFPDGTDYMND 363 (416)
Q Consensus 302 ~kPv~i~EfG~~~~~~g~~~~~r~~~~~~-----~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~d 363 (416)
|.|++|||+-+...++. +...|+....+ .+...+ .....+.+..+|.+.|. ..|-.
T Consensus 250 Gl~i~VTELD~~~~~P~-~~~p~~~~~~~~~~~~~f~~~~---~~~~~v~~it~WGi~D~--ySWl~ 310 (345)
T COG3693 250 GLPIYVTELDMSDYTPD-SGAPRLYLQKAASRAKAFLLLL---LNPNQVKAITFWGITDR--YSWLR 310 (345)
T ss_pred CCCceEEEeeeeccCCC-CccHHHHHHHHHHHHHHHHHHH---hcccccceEEEeeeccC--ccccc
Confidence 99999999988774321 11122222211 122121 12334788999999988 55544
No 37
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=9.8e-06 Score=74.37 Aligned_cols=200 Identities=17% Similarity=0.220 Sum_probs=127.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
.-+.+..||++++..+. .||++. +| -..|..++.+|.+.|+++++-+.-
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~-sD-----------------Cn~le~v~pAa~~~g~kv~lGiw~------------ 109 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG-SD-----------------CNTLENVLPAAEASGFKVFLGIWP------------ 109 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee-cc-----------------chhhhhhHHHHHhcCceEEEEEee------------
Confidence 45789999999999998 999975 21 223457788999999999887631
Q ss_pred HhhhhcCCCCCCCcCcCCCHHHHHHHH-HHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHH
Q 014902 131 KWGKAAGLNLTSDDEFFSHTTLKSYYK-AHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMA 209 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~~~~~~~~~-~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~ 209 (416)
++ +...... ..+..+.. |...+.|....++||.-...+.....+.+.+..+-
T Consensus 110 -----------------td-d~~~~~~~til~ay~~---------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vr 162 (305)
T COG5309 110 -----------------TD-DIHDAVEKTILSAYLP---------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVR 162 (305)
T ss_pred -----------------cc-chhhhHHHHHHHHHhc---------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHH
Confidence 00 1111111 12222222 56778899999999998877777788899999999
Q ss_pred HHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHH
Q 014902 210 VYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSW 289 (416)
Q Consensus 210 ~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~ 289 (416)
.++++.+-+-+|++.. .| .. ...||. .+...||+..|.-+. |...... +....|
T Consensus 163 sav~~agy~gpV~T~d-sw-~~-----~~~np~--------------l~~~SDfia~N~~aY-wd~~~~a----~~~~~f 216 (305)
T COG5309 163 SAVKEAGYDGPVTTVD-SW-NV-----VINNPE--------------LCQASDFIAANAHAY-WDGQTVA----NAAGTF 216 (305)
T ss_pred HHHHhcCCCCceeecc-cc-ee-----eeCChH--------------Hhhhhhhhhcccchh-ccccchh----hhhhHH
Confidence 9999888887776543 21 10 111332 245568887765554 5432211 111223
Q ss_pred HHH---HHHHHHHhCCCcEEEEecCCccCCC--C---CChhHHHHHHHHHHHHH
Q 014902 290 MEA---HIEDAEKYLRMPVLFTEFGVSAKDT--G---YNTSFRDTLISSVYKTL 335 (416)
Q Consensus 290 i~~---~~~~a~~~~~kPv~i~EfG~~~~~~--g---~~~~~r~~~~~~~~~~~ 335 (416)
+.. +++.+.- ..||++|+|.|.+.++. | -+.+.+..+++.++..+
T Consensus 217 ~~~q~e~vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~ 269 (305)
T COG5309 217 LLEQLERVQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNAL 269 (305)
T ss_pred HHHHHHHHHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhh
Confidence 322 2232322 34999999999999863 2 26677888877766544
No 38
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.48 E-value=3.2e-06 Score=79.03 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred eEEEeccCCCCCCC--CChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhC-C
Q 014902 182 FAWELMNEPRCTSD--PSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQ-T 258 (416)
Q Consensus 182 ~~wel~NEp~~~~~--~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~-~ 258 (416)
-.+..+|||+.... .+.+.+.+..+++.+.+|. +...|......+.+...+ ....| -.+|..... .
T Consensus 67 ~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~-----~g~~W----l~~F~~~~~~~ 135 (239)
T PF11790_consen 67 KHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTP-----GGLDW----LSQFLSACARG 135 (239)
T ss_pred cceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCC-----CccHH----HHHHHHhcccC
Confidence 34568899998652 2334444444555556663 444333211111110000 00002 123444333 4
Q ss_pred CCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCCCCCChhHHHHHHHHHHHHHHHh
Q 014902 259 LGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNS 338 (416)
Q Consensus 259 ~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~~~~~ 338 (416)
..+||+++|.|... ... +..+++..++..+|||+|||||........+.+++.+|+++++..+.+
T Consensus 136 ~~~D~iavH~Y~~~----------~~~----~~~~i~~~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~- 200 (239)
T PF11790_consen 136 CRVDFIAVHWYGGD----------ADD----FKDYIDDLHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDS- 200 (239)
T ss_pred CCccEEEEecCCcC----------HHH----HHHHHHHHHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 58999999999322 111 333444454448999999999987633334777888998887665532
Q ss_pred hhcCCccccccccc
Q 014902 339 TKKGGSGAGSLLWQ 352 (416)
Q Consensus 339 ~~~~~~~~G~~~W~ 352 (416)
...+.++.+..
T Consensus 201 ---~~~VeryawF~ 211 (239)
T PF11790_consen 201 ---QPYVERYAWFG 211 (239)
T ss_pred ---CCCeeEEEecc
Confidence 34466666666
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.46 E-value=7.1e-06 Score=72.05 Aligned_cols=139 Identities=18% Similarity=0.269 Sum_probs=96.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEE-eeecCCCccccccC---CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCC
Q 014902 50 STRGKVSELFHQASSAGLTVCRT-WAFNDGQWRALQTS---PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG 125 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi-~~~~~~~~~~~~~~---~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg 125 (416)
.+.++++++|+.|+++|+++|=+ |.-..+ ..+.|+ ++.+....-+.|+.+|++|++.||+|++-|...
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~--~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~------ 88 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGG--FAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD------ 88 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCC--cccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC------
Confidence 56799999999999999999844 321111 111122 222333445788999999999999999999732
Q ss_pred hhhHHHhhhhcCCCCCCCcCcCCCHH-HHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHH
Q 014902 126 KAQYVKWGKAAGLNLTSDDEFFSHTT-LKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSW 204 (416)
Q Consensus 126 ~~~y~~w~~~~G~~~~~~~~~~~~~~-~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w 204 (416)
+.|... .+++ ..+.-+..++.+.++ |++||++-+|=|-.|+..... ...+.
T Consensus 89 ----~~~w~~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~~ 140 (166)
T PF14488_consen 89 ----PDYWDQ------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPER 140 (166)
T ss_pred ----chhhhc------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHHH
Confidence 122211 1212 223334577788888 999999999999999998653 23556
Q ss_pred HHHHHHHhhhcCCCcEEEec
Q 014902 205 IQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 205 ~~~~~~~Ir~~dp~~lV~~g 224 (416)
.+.+..++|++.|+.+|.+.
T Consensus 141 ~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 141 FALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHHHhCCCCCeEEe
Confidence 68888899999998888764
No 40
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.3e-09 Score=106.52 Aligned_cols=350 Identities=21% Similarity=0.312 Sum_probs=198.9
Q ss_pred CCCcEEEeCCeEE-ECCeE------EEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeec--C--C----
Q 014902 14 DWQMVQKQGNQFV-VNDQP------FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFN--D--G---- 78 (416)
Q Consensus 14 ~~~fv~~~g~~f~-~~G~~------~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~--~--~---- 78 (416)
..+||.++..++. +||++ ....|.|.+ .++.-++.++.+++.++++.+.. + +
T Consensus 34 ~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~-------------y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~ 100 (587)
T COG3934 34 PAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVW-------------YAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWR 100 (587)
T ss_pred cccCccceeEEEEEecCcchhhhhceecccccHH-------------HHHHHhhhcccCcceEEEEEeecccccCcceeE
Confidence 4478888887765 89999 666677654 34455666667777777764432 0 0
Q ss_pred -CccccccC-----------CC-CCChHHHH--HHHHHHHHHHHcCCEEE---EecCCCcCcCCChhhHHHhhhhc----
Q 014902 79 -QWRALQTS-----------PS-VYDEEVFK--ALDFVISEAKKYKIRLI---LSLTNNWDAYGGKAQYVKWGKAA---- 136 (416)
Q Consensus 79 -~~~~~~~~-----------~g-~~~~~~l~--~lD~~l~~a~~~Gi~vi---l~l~~~w~~~gg~~~y~~w~~~~---- 136 (416)
.|..-|.. ++ .|.+..+. ++|-.|..-.-++..++ ....+.|.+.++|..|.+|....
T Consensus 101 Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvs 180 (587)
T COG3934 101 IPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVS 180 (587)
T ss_pred eecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeee
Confidence 12111111 11 13333333 44444444445555222 33345688889999999987531
Q ss_pred -CCCC-------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC-----ChhHHHH
Q 014902 137 -GLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP-----SGDTLQS 203 (416)
Q Consensus 137 -G~~~-------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~-----~~~~~~~ 203 (416)
|-+. +....++.|-.....|..|...++.|+-+.+|++|.+.|++++|...|+++..... ..+....
T Consensus 181 vGD~~sp~~~~~pyN~r~~vDya~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfi 260 (587)
T COG3934 181 VGDPASPWPQYAPYNARFYVDYAANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFI 260 (587)
T ss_pred cCCcCCcccccCCcccceeeccccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhh
Confidence 1111 11233455556667777888888899999999999999999999999999976432 1245666
Q ss_pred HHHHHH------HHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCC--
Q 014902 204 WIQEMA------VYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWIS-- 275 (416)
Q Consensus 204 w~~~~~------~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~-- 275 (416)
|+.-+. +.|.-++--|+.+.+.+.-+. |. + .+--.++....+.+|+-++|.++..|..
T Consensus 261 w~~lal~~ggdGaLiwclsdf~~gsdd~ey~w~----------p~-e---l~fgiIradgpek~~a~~~~~fsn~~kdI~ 326 (587)
T COG3934 261 WIRLALDTGGDGALIWCLSDFHLGSDDSEYTWG----------PM-E---LEFGIIRADGPEKIDAMTLHIFSNNWKDIS 326 (587)
T ss_pred hhhhHHhhcCCceEEEEecCCccCCCCCCCccc----------cc-c---ceeeeecCCCchhhhHHHHHHhccccceee
Confidence 765511 122222222322222221111 11 0 0111122334456677777777766632
Q ss_pred CCCh-----hHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCC----CCCChhHHHHHHHHHHHHHHHhhhcCCccc
Q 014902 276 QTIS-----DAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKD----TGYNTSFRDTLISSVYKTLLNSTKKGGSGA 346 (416)
Q Consensus 276 ~~~~-----~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~----~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 346 (416)
-+++ +...-....+.++++..+++ ..+|+++.+++..... ++.....|+..+..+++.-...+.-+++.+
T Consensus 327 ~~Sfq~p~~e~~eikp~~~va~~~fv~e~-~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt~ 405 (587)
T COG3934 327 MCSFQPPTYEAGEIKPRDYVAQHIFVAER-LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPTA 405 (587)
T ss_pred eecccCcccccceecchHhhhhceecHhh-hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCccc
Confidence 1110 11111123346677777777 8999999999977664 344455666766665444333444467789
Q ss_pred cccccccCCCCC---------------------CCCCCCceEEeCCCcCHHHHHHHHHHHHHhcccC
Q 014902 347 GSLLWQLFPDGT---------------------DYMNDGYAIVLSKSPSTSNIISLHSTRIATFNSL 392 (416)
Q Consensus 347 G~~~W~~~~~g~---------------------~~~~dg~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (416)
|...|.+...+. ..|..=||+...+ .+..+.+++++..++.|+..
T Consensus 406 g~Ttw~~llk~vvn~v~~v~Fs~p~ts~h~s~th~wq~lFGv~di~-~~gs~g~~a~~~nVkllg~~ 471 (587)
T COG3934 406 GVTTWAWLLKGVVNQVPDVWFSKPDTSYHGSPTHEWQGLFGVFDID-ASGSAGIKAHAANVKLLGKS 471 (587)
T ss_pred chhHHHHHhhhhhccccceeecCCceeecCCCchhhHHhhCCCCCc-cccccccccchhhhcccccc
Confidence 999998853321 1233346644333 45556677888888877754
No 41
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.23 E-value=0.00036 Score=68.35 Aligned_cols=299 Identities=15% Similarity=0.181 Sum_probs=121.0
Q ss_pred EEEEEEeeccchhh-hhc-CCC-ChhHHHHHHHHH--------HHcCCCEEEEeeecC-----------CCcc---cccc
Q 014902 31 PFYVNGFNTYWLMV-FAA-DQS-TRGKVSELFHQA--------SSAGLTVCRTWAFND-----------GQWR---ALQT 85 (416)
Q Consensus 31 ~~~~~G~N~~~~~~-~~~-~~~-~~~~~~~dl~~~--------~~~G~n~vRi~~~~~-----------~~~~---~~~~ 85 (416)
++-=.|+..+|.+. .+. .+. .++++-+.|=.. +.+|++.+|.-+-.- ..|+ .+.+
T Consensus 14 tieGfGaS~aW~a~~~Gk~w~~~~r~~iaDlLFS~~~~~~g~p~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~ 93 (384)
T PF14587_consen 14 TIEGFGASDAWWANFVGKNWPEEKRNQIADLLFSTENDSNGNPKGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLP 93 (384)
T ss_dssp E--EEEEE-TTTHHHHHHHS-HHHHHHHHHHHH---B-TTS-B-S---S-EEEE---STTTTTTSS--SSSTT----SB-
T ss_pred eeccccHHHhHHHHHhcccCCHHHHHHHHHHhcCCCcccCCCCCCceeeeeeeccccCCcccccCccCCCcccCCccccC
Confidence 34445777766543 331 221 233333333222 579999999965321 0122 3344
Q ss_pred CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCC-cCcCCCHHHHHHHHHHHHHHH
Q 014902 86 SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSD-DEFFSHTTLKSYYKAHVKTVL 164 (416)
Q Consensus 86 ~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~-~~~~~~~~~~~~~~~~v~~~v 164 (416)
.+|.||-..=+.=..++.+|+++|+..++.+.+. . |-|....|...... ..--..++..+.|.+|+..++
T Consensus 94 ~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNS--P-------P~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv 164 (384)
T PF14587_consen 94 ADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNS--P-------PWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVV 164 (384)
T ss_dssp TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SS--S--------GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecC--C-------CHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHH
Confidence 5566652211222357899999999998877643 1 22333333211110 011123567899999999999
Q ss_pred hcccccccccccCCC-cEeEEEeccCCCCCCC---C-----ChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCC--
Q 014902 165 NRVNTFTNLTYKNDP-TIFAWELMNEPRCTSD---P-----SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSA-- 233 (416)
Q Consensus 165 ~R~N~~tg~~y~~~p-~I~~wel~NEp~~~~~---~-----~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~-- 233 (416)
++ |+.+- .|-..+.+|||...-. . ..+...+.++.+.+.|++...+..|+++.++-+....
T Consensus 165 ~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~ 236 (384)
T PF14587_consen 165 KH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKT 236 (384)
T ss_dssp HH--------HHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS--
T ss_pred HH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhc
Confidence 99 74442 4666899999986521 1 1356778889999999998888888877644321100
Q ss_pred ----CCC-----cCCCcCcccccccchhhhhhCCCCC-cEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhC--
Q 014902 234 ----PDR-----AKFNPNSYATQVGTDFIRNHQTLGV-DFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYL-- 301 (416)
Q Consensus 234 ----~~~-----~~~np~~~~~~~g~d~~~~~~~~~i-D~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~-- 301 (416)
... ..++|. ...++. ..++| .+++-|.|-.. .+ ...+...++-+++ .+.+ .
T Consensus 237 ~~~~~~r~~~i~~ff~~~------s~~yi~--~l~~v~~~i~~HsYwt~---~~--~~~l~~~R~~~~~---~~~~-~~~ 299 (384)
T PF14587_consen 237 DKNDWGRGNQIEAFFNPD------SSTYIG--DLPNVPNIISGHSYWTD---SP--WDDLRDIRKQLAD---KLDK-YSP 299 (384)
T ss_dssp -S-TTS---HHHHHHSTT------STT--T--T-TTEEEEEEE--TT-S---SS--HHHHHHHHHHHHH---HHHT-TSS
T ss_pred cCCchhhhhhHHhhcCCC------chhhhh--ccccchhheeecccccC---CC--HHHHHHHHHHHHH---HHHh-hCc
Confidence 000 011111 111221 22333 57899999432 21 1122222222222 2333 4
Q ss_pred CCcEEEEecCCccCCCC---CChhHHHHHHHHH---HHHHHHhhhcCCccccccccccCCCCCCCCCCCce
Q 014902 302 RMPVLFTEFGVSAKDTG---YNTSFRDTLISSV---YKTLLNSTKKGGSGAGSLLWQLFPDGTDYMNDGYA 366 (416)
Q Consensus 302 ~kPv~i~EfG~~~~~~g---~~~~~r~~~~~~~---~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~dg~~ 366 (416)
+..++.+||.+-.+..+ .....|+..+... ...|...+.. ..+..|-+|.-... ..+.||+=
T Consensus 300 ~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~arviH~DL~~-anassW~wW~a~~~--~~ykdgli 367 (384)
T PF14587_consen 300 GLKYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVARVIHNDLTY-ANASSWQWWTAISP--YDYKDGLI 367 (384)
T ss_dssp --EEEE----S----TTT-SSS-HHHHHHH--HHHHHHHHHHHHHT-S--SEEEEEESEES--S--SSSSE
T ss_pred CCceeeeeeeeccCCcccccCCCcccchhHHHHHHHHHHHHhhhhh-cccchhHHHHHhcc--ccccCceE
Confidence 78899999998876421 1122244444321 1111111111 12566777766544 34456653
No 42
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.73 E-value=0.0017 Score=62.21 Aligned_cols=228 Identities=17% Similarity=0.142 Sum_probs=114.6
Q ss_pred HcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCC
Q 014902 64 SAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSD 143 (416)
Q Consensus 64 ~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~ 143 (416)
++|+..+|+.+-+..-|- .|.+|.. .+.|- +-.-+..+|++|+.+. |.. |.|.+..+-.. ..
T Consensus 77 ~lg~si~Rv~I~~ndfsl-----~g~~d~w-~kels-~Ak~~in~g~ivfASP---Wsp-------Pa~Mktt~~~n-gg 138 (433)
T COG5520 77 QLGFSILRVPIDSNDFSL-----GGSADNW-YKELS-TAKSAINPGMIVFASP---WSP-------PASMKTTNNRN-GG 138 (433)
T ss_pred ccCceEEEEEeccccccc-----CCCcchh-hhhcc-cchhhcCCCcEEEecC---CCC-------chhhhhccCcC-Cc
Confidence 689999999763321111 1222211 11111 1123678999998876 443 34444321000 00
Q ss_pred cCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCCCCCCC-----ChhHHHHHHHHHHHHhhhcCC
Q 014902 144 DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSDP-----SGDTLQSWIQEMAVYVKSIDA 217 (416)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p-~I~~wel~NEp~~~~~~-----~~~~~~~w~~~~~~~Ir~~dp 217 (416)
...=.-++....|.+|+..+|.. ++++- .+-+..+.|||...... ..+...++ |.++++++..
T Consensus 139 ~~g~Lk~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF---~~qyl~si~~ 207 (433)
T COG5520 139 NAGRLKYEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRF---MRQYLASINA 207 (433)
T ss_pred cccccchhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHHH---HHHhhhhhcc
Confidence 00112345566777777777777 77763 57788999999976321 22333333 3344444443
Q ss_pred CcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHH
Q 014902 218 KHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDA 297 (416)
Q Consensus 218 ~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a 297 (416)
...|..-. .+. ..|. +. ..-+....+..++|.++.|.|...-.. .+..+ +
T Consensus 208 ~~rV~~pe-s~~---------~~~~-~~---dp~lnDp~a~a~~~ilg~H~Ygg~v~~----------~p~~l------a 257 (433)
T COG5520 208 EMRVIIPE-SFK---------DLPN-MS---DPILNDPKALANMDILGTHLYGGQVSD----------QPYPL------A 257 (433)
T ss_pred ccEEecch-hcc---------cccc-cc---cccccCHhHhcccceeEeeeccccccc----------chhhH------h
Confidence 44443321 110 1121 10 000001124578999999999654211 01111 2
Q ss_pred HH-hCCCcEEEEecCCccCCCCCChhHHHHHHHHHHHHHHHhhhcCCccccccccccCC
Q 014902 298 EK-YLRMPVLFTEFGVSAKDTGYNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFP 355 (416)
Q Consensus 298 ~~-~~~kPv~i~EfG~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~ 355 (416)
+. -.+|-|++||.-....++++. .| ..+. +...+.-.+..|+ ..|+++|.+..
T Consensus 258 k~~~~gKdlwmte~y~~esd~~s~--dr-~~~~-~~~hi~~gm~~gg-~~ayv~W~i~~ 311 (433)
T COG5520 258 KQKPAGKDLWMTECYPPESDPNSA--DR-EALH-VALHIHIGMTEGG-FQAYVWWNIRL 311 (433)
T ss_pred hCCCcCCceEEeecccCCCCCCcc--hH-HHHH-HHHHHHhhccccC-ccEEEEEEEee
Confidence 22 148999999997776665432 23 2222 2223333444454 88999998853
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.54 E-value=0.0069 Score=58.85 Aligned_cols=208 Identities=16% Similarity=0.275 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCC--c-cccccC----CCC-CChHHHHHHHHHHHHHHHcCCEEEEecC-CC-c
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQ--W-RALQTS----PSV-YDEEVFKALDFVISEAKKYKIRLILSLT-NN-W 120 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~--~-~~~~~~----~g~-~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~-w 120 (416)
+++.+++.|+.++++|+|+|=+-+...+. + +.+.|. .|. ....+++-|..+|++|+++||.|..=+. .. .
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 57889999999999999988663322221 1 111111 111 1122578899999999999999964331 00 0
Q ss_pred CcCCC-hhhHHHhhh--hcCCCCC----CCcCcCC---CHHHHHHHHHHHHHHHhcccccccccccCC---CcEeEEEe-
Q 014902 121 DAYGG-KAQYVKWGK--AAGLNLT----SDDEFFS---HTTLKSYYKAHVKTVLNRVNTFTNLTYKND---PTIFAWEL- 186 (416)
Q Consensus 121 ~~~gg-~~~y~~w~~--~~G~~~~----~~~~~~~---~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~---p~I~~wel- 186 (416)
...+. ....+.|.. ..|.... .....|- +|++++...+.++.|+++.. +.|+.+-+. |...+++.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecccccccccCCCCCc
Confidence 00000 112344522 1111000 1222333 57899999999999999953 455544331 11111100
Q ss_pred ---------ccCCCCC-CC-----CChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccch
Q 014902 187 ---------MNEPRCT-SD-----PSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTD 251 (416)
Q Consensus 187 ---------~NEp~~~-~~-----~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d 251 (416)
+..|... .+ .-.+....+++++...||++.|+..+++...|.++.+.. ..| +|
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y~-------~~~-----qD 243 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAYD-------DYY-----QD 243 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhhh-------hee-----cc
Confidence 0001000 00 001345566888999999999999988765444421110 001 23
Q ss_pred hhhhhCCCCCcEEEEeecCC
Q 014902 252 FIRNHQTLGVDFASVHIYAD 271 (416)
Q Consensus 252 ~~~~~~~~~iD~~s~H~Y~~ 271 (416)
+..=....-||++..-.|..
T Consensus 244 ~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 244 WRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHHHhcCCccEEEeeeccc
Confidence 32212346899999999943
No 44
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.38 E-value=0.0093 Score=61.49 Aligned_cols=247 Identities=18% Similarity=0.188 Sum_probs=120.2
Q ss_pred HHHHHHHHHHcCCCEEEEeeec-CCC---ccccccCCC-----CCC--hHHHHHHHHHHHHHHHc--CCEEEEecCCCcC
Q 014902 55 VSELFHQASSAGLTVCRTWAFN-DGQ---WRALQTSPS-----VYD--EEVFKALDFVISEAKKY--KIRLILSLTNNWD 121 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~-~~~---~~~~~~~~g-----~~~--~~~l~~lD~~l~~a~~~--Gi~vil~l~~~w~ 121 (416)
++..|. =..+|++.+|+.+.+ |-. +. +...++ .|+ .+-.+..--+|.+|.+. +|+++.+. |.
T Consensus 103 l~~~F~-~~G~g~s~~R~pIgssDfs~~~Yt-y~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp---WS 177 (496)
T PF02055_consen 103 LRSLFS-EDGIGYSLLRVPIGSSDFSTRPYT-YDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP---WS 177 (496)
T ss_dssp HHHHHS-TTTT---EEEEEES--SSSSS----ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE---S-
T ss_pred HHHHhh-cCCceEEEEEeeccCcCCcCCccc-ccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec---CC
Confidence 344444 267999999996643 211 11 111111 121 11111112345544443 48887765 55
Q ss_pred cCCChhhHHHhhhhcCCCCC-CCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCCCCC-----
Q 014902 122 AYGGKAQYVKWGKAAGLNLT-SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTS----- 194 (416)
Q Consensus 122 ~~gg~~~y~~w~~~~G~~~~-~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p-~I~~wel~NEp~~~~----- 194 (416)
. |.|.+..+.-.. ..-..-..+++.+.|.+|+..+++. |+.+- .|-+..+.|||....
T Consensus 178 p-------P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~~~ 242 (496)
T PF02055_consen 178 P-------PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPNYP 242 (496)
T ss_dssp ---------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT-S
T ss_pred C-------CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCCCC
Confidence 3 677765431100 0000111346788999999999998 88773 477788899998531
Q ss_pred CC----ChhHHHHHHHH-HHHHhhhcCC--CcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEe
Q 014902 195 DP----SGDTLQSWIQE-MAVYVKSIDA--KHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVH 267 (416)
Q Consensus 195 ~~----~~~~~~~w~~~-~~~~Ir~~dp--~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H 267 (416)
.+ +++..+.|++. +..++++..+ +.-|.+....... .|. |....-.| ..+.+.+|-+++|
T Consensus 243 ~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~---------~~~-~~~~il~d---~~A~~yv~GiA~H 309 (496)
T PF02055_consen 243 WPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDN---------LPD-YADTILND---PEAAKYVDGIAFH 309 (496)
T ss_dssp SC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGG---------TTH-HHHHHHTS---HHHHTTEEEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcc---------cch-hhhhhhcC---hhhHhheeEEEEE
Confidence 11 35667888875 8889998776 4444332211100 121 21000001 1134679999999
Q ss_pred ecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCccCCCC----CChhHHHHHHHHHHHHHHHhhhcCC
Q 014902 268 IYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEFGVSAKDTG----YNTSFRDTLISSVYKTLLNSTKKGG 343 (416)
Q Consensus 268 ~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~EfG~~~~~~g----~~~~~r~~~~~~~~~~~~~~~~~~~ 343 (416)
.|.+.- . . .-|.. ...+..+|.++.||-.......+ ...-.|...+ ...+...+..+
T Consensus 310 wY~g~~---~--~-------~~l~~---~h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y---~~~ii~~lnn~- 370 (496)
T PF02055_consen 310 WYGGDP---S--P-------QALDQ---VHNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERY---AHDIIGDLNNW- 370 (496)
T ss_dssp ETTCS----H--C-------HHHHH---HHHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHH---HHHHHHHHHTT-
T ss_pred CCCCCc---h--h-------hHHHH---HHHHCCCcEEEeeccccCCCCcccccccccHHHHHHH---HHHHHHHHHhh-
Confidence 996521 0 0 01111 11223789999999854432211 1111232212 12234444443
Q ss_pred ccccccccccC
Q 014902 344 SGAGSLLWQLF 354 (416)
Q Consensus 344 ~~~G~~~W~~~ 354 (416)
..||+.|.+.
T Consensus 371 -~~gw~~WNl~ 380 (496)
T PF02055_consen 371 -VSGWIDWNLA 380 (496)
T ss_dssp -EEEEEEEESE
T ss_pred -ceeeeeeeee
Confidence 7899999985
No 45
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=97.23 E-value=0.00047 Score=66.47 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q 014902 95 FKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 95 l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+++.|.+.+-|++-|+++|+.|.
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 46889999999999999999996
No 46
>PLN02801 beta-amylase
Probab=96.77 E-value=0.048 Score=55.14 Aligned_cols=130 Identities=13% Similarity=0.309 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 127 (416)
+++.++..|..+|++|+.-|=+ |.=|-.+|. .|+.|| |..+.++++.+++.|||+.+.+.-| -+||.-
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmv----DVWWGiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 105 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMV----DVWWGIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFH--QCGGNVGD 105 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eeeeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578899999999999999987 222445564 588998 8999999999999999986666422 355531
Q ss_pred ----hHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHH
Q 014902 128 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 203 (416)
Q Consensus 128 ----~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~ 203 (416)
.-|.|....|. .+.+-||+|+.- .++. --++|.+-|+|-......-+.+..
T Consensus 106 ~~~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~D 160 (517)
T PLN02801 106 AVNIPIPQWVRDVGD--SDPDIFYTNRSG----------------------NRNK-EYLSIGVDNLPLFHGRTAVEMYSD 160 (517)
T ss_pred cccccCCHHHHHhhc--cCCCceeecCCC----------------------CcCc-ceeeeccCcccccCCCCHHHHHHH
Confidence 13677654331 123457776432 1222 345788999998754322245556
Q ss_pred HHHHHHHHhhh
Q 014902 204 WIQEMAVYVKS 214 (416)
Q Consensus 204 w~~~~~~~Ir~ 214 (416)
+++........
T Consensus 161 fm~SFr~~F~~ 171 (517)
T PLN02801 161 YMKSFRENMAD 171 (517)
T ss_pred HHHHHHHHHHH
Confidence 66555444443
No 47
>PLN02905 beta-amylase
Probab=96.63 E-value=0.052 Score=56.06 Aligned_cols=130 Identities=14% Similarity=0.317 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 127 (416)
+.+.++..|..+|.+|+.-|=+ |.=|-.+|. .|+.|| |..+.++++.+++.|||+.+.|.-| -+||.-
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmv----DVWWGiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFH--qCGGNVGD 354 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKV----DCWWGIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFH--ECGGNVGD 354 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578899999999999999987 122445554 588998 8999999999999999987666422 355531
Q ss_pred ----hHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHH
Q 014902 128 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 203 (416)
Q Consensus 128 ----~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~ 203 (416)
.-|.|....|. .+.+-||+|+.- .++... ++|-+-|+|-......-+.+..
T Consensus 355 ~~~IPLP~WV~e~g~--~nPDifftDrsG----------------------~rn~Ey-LSlg~D~~pvl~GRTplq~Y~D 409 (702)
T PLN02905 355 DVCIPLPHWVAEIGR--SNPDIFFTDREG----------------------RRNPEC-LSWGIDKERILRGRTALEVYFD 409 (702)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------CccCce-eeeecccccccCCCCHHHHHHH
Confidence 13667654331 123457776442 233334 4699999997754333355666
Q ss_pred HHHHHHHHhhh
Q 014902 204 WIQEMAVYVKS 214 (416)
Q Consensus 204 w~~~~~~~Ir~ 214 (416)
|++......+.
T Consensus 410 FM~SFr~~F~~ 420 (702)
T PLN02905 410 YMRSFRVEFDE 420 (702)
T ss_pred HHHHHHHHHHH
Confidence 66555444444
No 48
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.62 E-value=0.75 Score=44.59 Aligned_cols=204 Identities=15% Similarity=0.184 Sum_probs=105.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCC---ccc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQ---WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYG 124 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~---~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 124 (416)
+.+.+++.|+.+++.|+|++=|=+=+|.+ ++. .....|.. ......+..+++.++++||++|--+..+=+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 45789999999999999999772222211 110 00011211 112356789999999999999866643211110
Q ss_pred ChhhHHHhhhh--cCCCCC-CCcCcCCC---HHHHHHHHHHHHHHHhcccccccccc--cCCCcEeEEEeccCCCCCCCC
Q 014902 125 GKAQYVKWGKA--AGLNLT-SDDEFFSH---TTLKSYYKAHVKTVLNRVNTFTNLTY--KNDPTIFAWELMNEPRCTSDP 196 (416)
Q Consensus 125 g~~~y~~w~~~--~G~~~~-~~~~~~~~---~~~~~~~~~~v~~~v~R~N~~tg~~y--~~~p~I~~wel~NEp~~~~~~ 196 (416)
. ...+.|.-. .|.... ....-|.| +++++.-.+.++++++. -+..+.| ---|+- ...+........
T Consensus 90 a-~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~--GFdEIqfDYIRFP~~---~~~~~l~y~~~~ 163 (316)
T PF13200_consen 90 A-EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL--GFDEIQFDYIRFPDE---GRLSGLDYSEND 163 (316)
T ss_pred h-hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEeeeeecCCC---CcccccccCCCC
Confidence 0 012344321 121111 12223555 45555556666666654 1111111 111220 001111111101
Q ss_pred ----ChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCC
Q 014902 197 ----SGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADS 272 (416)
Q Consensus 197 ----~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~ 272 (416)
..+++..+++.+.+.++..+ ..|++..-|.-... + +. ..-|+++.. ..+.+|+++.=.||.+
T Consensus 164 ~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~~~~-~-----~~----~~iGQ~~~~--~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 164 TEESRVDAITDFLAYAREELHPYG--VPVSADVFGYVAWS-P-----DD----MGIGQDFEK--IAEYVDYISPMIYPSH 229 (316)
T ss_pred CcchHHHHHHHHHHHHHHHHhHcC--CCEEEEeccccccc-C-----CC----CCcCCCHHH--HhhhCCEEEecccccc
Confidence 12567788888888887664 45665442321110 0 01 135777765 5689999999999998
Q ss_pred cCC
Q 014902 273 WIS 275 (416)
Q Consensus 273 w~~ 275 (416)
|..
T Consensus 230 ~~~ 232 (316)
T PF13200_consen 230 YGP 232 (316)
T ss_pred cCc
Confidence 864
No 49
>PLN02705 beta-amylase
Probab=96.49 E-value=0.016 Score=59.44 Aligned_cols=122 Identities=18% Similarity=0.328 Sum_probs=83.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 127 (416)
+++.++..|..+|.+|+.-|=+ |.=|-.+|. .|+.|| |..+.++++.+++.|||+.+.|.-| -+||.-
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmv----DVWWGiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFH--qCGGNVGD 336 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVV----DCWWGIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFH--EYGGNASG 336 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eeeeeEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEee--ccCCCCCC
Confidence 4678999999999999999887 222445554 588998 8999999999999999987665422 245431
Q ss_pred ----hHHHhhhhcCCCCCCCcCcCCC----------------------HHHHHHHHHHHHHHHhcccccccccccC---C
Q 014902 128 ----QYVKWGKAAGLNLTSDDEFFSH----------------------TTLKSYYKAHVKTVLNRVNTFTNLTYKN---D 178 (416)
Q Consensus 128 ----~y~~w~~~~G~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~v~R~N~~tg~~y~~---~ 178 (416)
.-|.|....|.. +.+-||+| ....+.|.+|++.+-.. |++ .
T Consensus 337 ~~~IPLP~WV~e~g~~--nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~--------F~~fl~~ 406 (681)
T PLN02705 337 NVMISLPQWVLEIGKD--NQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSE--------FDDLFVE 406 (681)
T ss_pred cccccCCHHHHHhccc--CCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHH--------HHHhccC
Confidence 246787653321 11234443 23468899999888877 555 3
Q ss_pred CcEeEEEeccCCC
Q 014902 179 PTIFAWELMNEPR 191 (416)
Q Consensus 179 p~I~~wel~NEp~ 191 (416)
..|.-.+++=-|.
T Consensus 407 g~I~eI~VGLGP~ 419 (681)
T PLN02705 407 GLITAVEIGLGAS 419 (681)
T ss_pred CceeEEEeccCCC
Confidence 4677777765554
No 50
>PLN00197 beta-amylase; Provisional
Probab=96.40 E-value=0.02 Score=58.35 Aligned_cols=122 Identities=19% Similarity=0.315 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 127 (416)
+++.++..|..+|++|+.-|=+ |.=|-.+|. .|+.|| |..+.++++.+++.|||+.+.+.-| -+||.-
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmv----DvWWGiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFH--qCGGNVGD 195 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMM----DVWWGLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFH--QCGGNVGD 195 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----eeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578999999999999999887 222445554 688998 8999999999999999987666422 355531
Q ss_pred ----hHHHhhhhcCCCCCCCcCcCCC----------------------HHHHHHHHHHHHHHHhcccccccccccC--CC
Q 014902 128 ----QYVKWGKAAGLNLTSDDEFFSH----------------------TTLKSYYKAHVKTVLNRVNTFTNLTYKN--DP 179 (416)
Q Consensus 128 ----~y~~w~~~~G~~~~~~~~~~~~----------------------~~~~~~~~~~v~~~v~R~N~~tg~~y~~--~p 179 (416)
.-|.|....|.. +.+-||+| +..++.|.+|++.+-.. |++ ..
T Consensus 196 ~~~IpLP~WV~~~g~~--dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~--------F~~~l~~ 265 (573)
T PLN00197 196 SCTIPLPKWVVEEVDK--DPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDN--------FKHLLGD 265 (573)
T ss_pred cccccCCHHHHHhhcc--CCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHH--------HHHHhcC
Confidence 246786643311 12234443 23468899999888877 444 13
Q ss_pred cEeEEEeccCCC
Q 014902 180 TIFAWELMNEPR 191 (416)
Q Consensus 180 ~I~~wel~NEp~ 191 (416)
.|.-.+++==|.
T Consensus 266 ~I~eI~VGlGP~ 277 (573)
T PLN00197 266 TIVEIQVGMGPA 277 (573)
T ss_pred ceeEEEeccCcC
Confidence 677777765443
No 51
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.38 E-value=0.05 Score=57.77 Aligned_cols=67 Identities=16% Similarity=0.033 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecC-CCccccccCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFND-GQWRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~-~~~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+-.-+.+-|+.+++||+|+|=+-.+.+ ...+.+.+.. -..++ ...+.|.+++++|+++||+||+++.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 446678889999999999997733211 1111111110 01111 1257788999999999999999986
No 52
>PLN02161 beta-amylase
Probab=96.20 E-value=0.051 Score=54.95 Aligned_cols=129 Identities=9% Similarity=0.167 Sum_probs=82.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 127 (416)
+...++..|..+|.+|+.-|=+ |.=|-.+|. .|+.|| |..+.++++.+++.|||+.+.+.-| -+||.-
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmv----DVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNvGd 185 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAV----EVWWGIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFH--SNMHLFGG 185 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----EeeeeeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4567899999999999999987 222445554 688998 8999999999999999987666422 233320
Q ss_pred ----hHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHH
Q 014902 128 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 203 (416)
Q Consensus 128 ----~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~ 203 (416)
.-|.|....|. .+.+-||+|+.- .++. --++|.+-|+|-......-+.+.+
T Consensus 186 ~~~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~D 240 (531)
T PLN02161 186 KGGISLPLWIREIGD--VNKDIYYRDKNG----------------------FSNN-DYLTLGVDQLPLFGGRTAVQCYED 240 (531)
T ss_pred ccCccCCHHHHhhhc--cCCCceEEcCCC----------------------Cccc-ceeeeecccchhcCCCCHHHHHHH
Confidence 13677654331 123457776442 2333 245788999998754322245555
Q ss_pred HHHHHHHHhh
Q 014902 204 WIQEMAVYVK 213 (416)
Q Consensus 204 w~~~~~~~Ir 213 (416)
+++......+
T Consensus 241 fm~SFr~~F~ 250 (531)
T PLN02161 241 FMLSFSTKFE 250 (531)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 53
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.13 E-value=0.13 Score=54.93 Aligned_cols=167 Identities=8% Similarity=0.106 Sum_probs=86.9
Q ss_pred hhHHHHH-HHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcC
Q 014902 52 RGKVSEL-FHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWD 121 (416)
Q Consensus 52 ~~~~~~d-l~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~ 121 (416)
-..+.+. ++.++++|+|+|=+-.+.+ ..|. .+.+. ..|. ..+.|.++|++|+++||+||+++.-+..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~G--t~~dlk~lV~~~H~~Gi~VilD~V~NH~ 231 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFG--TPDDFMYFVDACHQAGIGVILDWVPGHF 231 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccCc
Confidence 3444445 5999999999998844321 1121 01111 1222 1467889999999999999999853211
Q ss_pred c--------CCChhhHHHhhhhcCC--CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCC
Q 014902 122 A--------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 191 (416)
Q Consensus 122 ~--------~gg~~~y~~w~~~~G~--~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~ 191 (416)
. +.+.+.|..-....+. +....+-=+.++++++.+.+-++..++.. .+.|.++---+.++.+.-.+++.
T Consensus 232 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey-~iDG~R~D~v~~~~~~~~~~~~~ 310 (613)
T TIGR01515 232 PKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFY-HIDGLRVDAVASMLYLDYSRDEG 310 (613)
T ss_pred CCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcCHHHhhhhccccccc
Confidence 0 1111111000000000 00000112357889999999999998861 12222221112333333333332
Q ss_pred C-----CCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 192 C-----TSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 192 ~-----~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
- ...........+++++.+.||+..|+.++.
T Consensus 311 ~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~li 346 (613)
T TIGR01515 311 EWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTI 346 (613)
T ss_pred cccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1 000001235678999999999999986543
No 54
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.11 E-value=0.033 Score=46.92 Aligned_cols=106 Identities=12% Similarity=0.263 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccc----ccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRA----LQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~----~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
++.++.++++|+|++-+++-+-+.|.. +.+ .|+ .. .+.|-++|++|+++||+|++-+.-.|+.. -...+|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~-L~---~Dllge~v~a~h~~Girv~ay~~~~~d~~-~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPG-LK---RDLLGEQVEACHERGIRVPAYFDFSWDED-AAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCC-CC---cCHHHHHHHHHHHCCCEEEEEEeeecChH-HHHhCC
Confidence 567889999999999996543222211 121 222 22 46778999999999999999886545431 123567
Q ss_pred Hhhhh--cCCCCC----CCcCcC---CCHHHHHHHHHHHHHHHhc
Q 014902 131 KWGKA--AGLNLT----SDDEFF---SHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 131 ~w~~~--~G~~~~----~~~~~~---~~~~~~~~~~~~v~~~v~R 166 (416)
.|... .|.+.. ....++ -|..+++.....++++++|
T Consensus 78 eW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 78 EWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred ceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 77542 232110 011122 1456788889999999999
No 55
>PLN02803 beta-amylase
Probab=96.01 E-value=0.058 Score=54.85 Aligned_cols=130 Identities=12% Similarity=0.215 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA-- 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-- 127 (416)
+++.++..|..+|.+|+.-|=+ |.=|-.+|. .|+.|| |..+.++++.+++.|||+.+.+.-| -+||.-
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmv----DVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFH--qCGGNVGD 175 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMV----DAWWGLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFH--QCGGNVGD 175 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE----EeeeeeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEec--ccCCCCCC
Confidence 4578899999999999999887 222445554 588998 8999999999999999987666422 355531
Q ss_pred ----hHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHH
Q 014902 128 ----QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQS 203 (416)
Q Consensus 128 ----~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~ 203 (416)
.-|.|....|. .+.+-||+|+.- .++. --+++.+-|+|-......-+.+..
T Consensus 176 ~~~IpLP~WV~e~~~--~~pDi~ftDr~G----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~D 230 (548)
T PLN02803 176 SCSIPLPPWVLEEMS--KNPDLVYTDRSG----------------------RRNP-EYISLGCDSLPVLRGRTPIQVYSD 230 (548)
T ss_pred cccccCCHHHHHhhh--cCCCceEecCCC----------------------Cccc-ceeccccccchhccCCCHHHHHHH
Confidence 13667654331 123457776432 1222 245688889988754322245566
Q ss_pred HHHHHHHHhhh
Q 014902 204 WIQEMAVYVKS 214 (416)
Q Consensus 204 w~~~~~~~Ir~ 214 (416)
+++......+.
T Consensus 231 fm~SFr~~F~~ 241 (548)
T PLN02803 231 YMRSFRERFKD 241 (548)
T ss_pred HHHHHHHHHHH
Confidence 66554444443
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.00 E-value=0.22 Score=54.27 Aligned_cols=164 Identities=11% Similarity=0.182 Sum_probs=82.8
Q ss_pred hHHHHH-HHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcC
Q 014902 53 GKVSEL-FHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWD 121 (416)
Q Consensus 53 ~~~~~d-l~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~ 121 (416)
..+.+. |+.++++|+|+|=+-...+ ..|. .+.+.+ .|. ..+.|.++|++|+++||+|||++. ||-.
T Consensus 265 ~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH~~ 341 (726)
T PRK05402 265 RELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAHFP 341 (726)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 344444 6999999999998844321 1121 011111 121 256788999999999999999985 2211
Q ss_pred c-------CCChhhHH--HhhhhcCC-C-CCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEecc--
Q 014902 122 A-------YGGKAQYV--KWGKAAGL-N-LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMN-- 188 (416)
Q Consensus 122 ~-------~gg~~~y~--~w~~~~G~-~-~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~N-- 188 (416)
. +.|.+.|. .+. .|. + .....-=+.++++++...+-++..++.. .+.|.++---..++.++-..
T Consensus 342 ~~~~~~~~~~~~~~y~~~~~~--~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~-~iDG~R~D~v~~~~~~~~~~~~ 418 (726)
T PRK05402 342 KDAHGLARFDGTALYEHADPR--EGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEF-HIDGLRVDAVASMLYLDYSRKE 418 (726)
T ss_pred CCccchhccCCCcceeccCCc--CCccCCCCCccccCCCHHHHHHHHHHHHHHHHHh-CCcEEEECCHHHhhhccccccc
Confidence 0 11111110 000 000 0 0000112557889998888888888761 01121111000111111000
Q ss_pred ---CCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 189 ---EPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 189 ---Ep~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
.|+............+++++.+.||+..|+.++.
T Consensus 419 g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~li 455 (726)
T PRK05402 419 GEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTI 455 (726)
T ss_pred cccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 0111100111235678899999999999987543
No 57
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.95 E-value=0.28 Score=52.51 Aligned_cols=164 Identities=12% Similarity=0.195 Sum_probs=82.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc--
Q 014902 55 VSELFHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA-- 122 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~-- 122 (416)
+++.|+.++++|+|+|=+-.+.+ ..|. .+.+.+ .|. ..+.|.++|++|+++||+||+++. ||-..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~G--t~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~ 249 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYG--TPEDFMYLVDALHQNGIGVILDWVPGHFPKDD 249 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 34446999999999998744311 1121 111111 121 256789999999999999999985 22110
Q ss_pred -----CCChhhHHHhhhh-cCC--CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEec--c--CC
Q 014902 123 -----YGGKAQYVKWGKA-AGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELM--N--EP 190 (416)
Q Consensus 123 -----~gg~~~y~~w~~~-~G~--~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~--N--Ep 190 (416)
+.|.+.|. +... .+. ......-=|.++++++.+.+-++..++.. .+.|.++---+.++..+-. . .|
T Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~-~iDG~R~D~~~~~~~~d~~~~~~~~~ 327 (633)
T PRK12313 250 DGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEY-HLDGLRVDAVSNMLYLDYDEEGEWTP 327 (633)
T ss_pred ccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCcEEEEcChhhhhhcccccccCcCC
Confidence 11111110 0000 000 00000112457899999888888888761 1122111110111110000 0 01
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEec
Q 014902 191 RCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 191 ~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 224 (416)
+............+++++.+.||+..|+.+ ++|
T Consensus 328 ~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~-lia 360 (633)
T PRK12313 328 NKYGGRENLEAIYFLQKLNEVVYLEHPDVL-MIA 360 (633)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHCCCeE-EEE
Confidence 110000011346788999999999999864 444
No 58
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.19 Score=49.58 Aligned_cols=246 Identities=16% Similarity=0.235 Sum_probs=129.5
Q ss_pred HHHHcCCCEEEEeeecCCCcc-ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCC
Q 014902 61 QASSAGLTVCRTWAFNDGQWR-ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLN 139 (416)
Q Consensus 61 ~~~~~G~n~vRi~~~~~~~~~-~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~ 139 (416)
.-++.|+|-||.++. |+ ..+ .-.|+ +.++|++++.....|+-.|.... .|...-...+ .|- +
T Consensus 13 ~~~Ei~v~yi~~~~v----~h~~~q--~~~~~---~t~~d~i~d~~~~~~~~~ie~~l-~~~~l~~~~~--~wq---~-- 75 (428)
T COG3664 13 TDDEIQVNYIRRHGV----WHVNAQ--KLFYP---FTYIDEIIDTLLDLGLDLIELFL-IWNNLNTKEH--QWQ---L-- 75 (428)
T ss_pred hhhhhceeeehhcce----eeeeec--cccCC---hHHHHHHHHHHHHhccHHHHHhh-cccchhhhhh--hcc---c--
Confidence 345899999987542 32 111 11244 67889999999999944433322 3443221111 232 1
Q ss_pred CCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCC
Q 014902 140 LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 218 (416)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~-p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 218 (416)
.-......++..+.++++++.| |+-. -+...++..|||+...+ -.+..+..-...|+.+|.
T Consensus 76 -----n~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~ad-----~~eyfk~y~~~a~~~~p~ 137 (428)
T COG3664 76 -----NVDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLAD-----KQEYFKLYDATARQRAPS 137 (428)
T ss_pred -----ccCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCcccc-----hHHHHHHHHhhhhccCcc
Confidence 0122235789999999999999 5522 24566789999998632 223333333334477776
Q ss_pred cEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCC--CCCh------hH-HHHHHHHH
Q 014902 219 HLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWIS--QTIS------DA-HLQFTKSW 289 (416)
Q Consensus 219 ~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~--~~~~------~~-~~~~~~~~ 289 (416)
..| |. .+ ||... .-|.. ..+.+||++.|.|...-.. ..+. +. ..--..+.
T Consensus 138 i~v--g~--~w----------~~e~l-----~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~~~r~ 196 (428)
T COG3664 138 IQV--GG--SW----------NTERL-----HEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLEDLRG 196 (428)
T ss_pred eee--cc--cc----------CcHHH-----hhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhhHHHH
Confidence 444 31 11 22100 11222 4678999999999432110 1110 00 00001123
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCccCCCC--CChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCC----CCCC--C
Q 014902 290 MEAHIEDAEKYLRMPVLFTEFGVSAKDTG--YNTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD----GTDY--M 361 (416)
Q Consensus 290 i~~~~~~a~~~~~kPv~i~EfG~~~~~~g--~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~----g~~~--~ 361 (416)
+.+.++.. . .|+|++++||.....+.. .++..|.+|+-.. +.+ .++++.+.-+|.+.+- |.++ .
T Consensus 197 ~~d~i~~~-~-~~~pl~~~~wntlt~~~~~~n~sy~raa~i~~~---Lr~---~g~~v~a~~yW~~sdl~e~~g~~~~~~ 268 (428)
T COG3664 197 LKDLIQHH-S-LGLPLLLTNWNTLTGPREPTNGSYVRAAYIMRL---LRE---AGSPVDAFGYWTNSDLHEEHGPPEAPF 268 (428)
T ss_pred HHHHHHhc-c-CCCcceeecccccCCCccccCceeehHHHHHHH---HHh---cCChhhhhhhhhcccccccCCCccccc
Confidence 33333321 2 689999999987765411 1233454544332 222 3566777788888653 2222 2
Q ss_pred CCCceEEeC
Q 014902 362 NDGYAIVLS 370 (416)
Q Consensus 362 ~dg~~i~~~ 370 (416)
-+||++...
T Consensus 269 ~~gfel~~~ 277 (428)
T COG3664 269 VGGFELFAP 277 (428)
T ss_pred ccceeeecc
Confidence 247877664
No 59
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=95.86 E-value=0.0087 Score=59.14 Aligned_cols=119 Identities=17% Similarity=0.305 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC-CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh---
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS-PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA--- 127 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~--- 127 (416)
...++..|+.+|++|+..|=+= .=|..+|.. |+.|| |..++++++.+++.||++.+.+.-| -+||.-
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvd----vWWGiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH--~cGgNvgD~ 85 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVD----VWWGIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFH--QCGGNVGDD 85 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEE----EEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S---BSSSTTSS
T ss_pred HHHHHHHHHHHHHcCCcEEEEE----eEeeeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeee--cCCCCCCCc
Confidence 3578999999999999998871 124555654 78898 9999999999999999997666422 244420
Q ss_pred ---hHHHhhhhcCCCCCCCcCcCC----------------CHHHHHHHHHHHHHHHhcccccccccccCC-CcEeEEEec
Q 014902 128 ---QYVKWGKAAGLNLTSDDEFFS----------------HTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELM 187 (416)
Q Consensus 128 ---~y~~w~~~~G~~~~~~~~~~~----------------~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~-p~I~~wel~ 187 (416)
.-|.|....+. ..+-||+ ... ++.|.+|++.+..+ |++. ..|...+++
T Consensus 86 ~~IpLP~Wv~~~~~---~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~--------f~~~~~~I~~I~vg 153 (402)
T PF01373_consen 86 CNIPLPSWVWEIGK---KDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDN--------FSDYLSTITEIQVG 153 (402)
T ss_dssp SEB-S-HHHHHHHH---HSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHH--------CHHHHTGEEEEEE-
T ss_pred cCCcCCHHHHhccc---cCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHH--------HHHHHhhheEEEec
Confidence 23677653221 0122233 234 89999999999988 5443 356666665
Q ss_pred cCCC
Q 014902 188 NEPR 191 (416)
Q Consensus 188 NEp~ 191 (416)
=-|.
T Consensus 154 lGP~ 157 (402)
T PF01373_consen 154 LGPA 157 (402)
T ss_dssp -SGG
T ss_pred cCCc
Confidence 4443
No 60
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=95.72 E-value=0.21 Score=49.83 Aligned_cols=179 Identities=16% Similarity=0.212 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCCEEEEeeec--C-CCcc-ccc---cCCCC------CChHHHHHHHHHHHHHHHcCCEEEEecCCCc
Q 014902 54 KVSELFHQASSAGLTVCRTWAFN--D-GQWR-ALQ---TSPSV------YDEEVFKALDFVISEAKKYKIRLILSLTNNW 120 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~--~-~~~~-~~~---~~~g~------~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w 120 (416)
.-.+.++.+|++-+-+||....+ + -.|. .+. ..|-. +.|..-=...+++++|++.|..+++++.-.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~G- 128 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNLG- 128 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEecC-
Confidence 34566899999999999984311 1 1231 111 12211 223333356788999999999999988621
Q ss_pred CcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC-cEeEEEeccCCCCCCCC---
Q 014902 121 DAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP-TIFAWELMNEPRCTSDP--- 196 (416)
Q Consensus 121 ~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p-~I~~wel~NEp~~~~~~--- 196 (416)
++|.+.-..|..--..| ....|.+ + +|. .| +..| .|-.|.|+||....-.+
T Consensus 129 --srgvd~ar~~vEY~n~p---ggtywsd-------------l-R~~---~G---~~~P~nvK~w~lGNEm~GpWq~G~~ 183 (501)
T COG3534 129 --SRGVDEARNWVEYCNHP---GGTYWSD-------------L-RRE---NG---REEPWNVKYWGLGNEMDGPWQCGHK 183 (501)
T ss_pred --CccHHHHHHHHHHccCC---CCChhHH-------------H-HHh---cC---CCCCcccceEEeccccCCCcccccc
Confidence 24544333443210000 0112221 0 111 01 2234 68899999999544222
Q ss_pred ChhHHHHHHHHHHHHhhhcCCCc-EEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCC
Q 014902 197 SGDTLQSWIQEMAVYVKSIDAKH-LVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYAD 271 (416)
Q Consensus 197 ~~~~~~~w~~~~~~~Ir~~dp~~-lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~ 271 (416)
..+.+..++.+..++.|=.||+. .+..|+.+- ..+ ..|. | .+-....+...+|++++|+|-.
T Consensus 184 ~a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~---~n~----~~~~-W-----~~~vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 184 TAPEYGRLANEYRKYMKYFDPTIENVVCGSANG---ANP----TDPN-W-----EAVVLEEAYERVDYISLHYYKG 246 (501)
T ss_pred cCHHHHHHHHHHHHHHhhcCccccceEEeecCC---CCC----CchH-H-----HHHHHHHHhhhcCeEEEEEecC
Confidence 23556667888899999999864 444453221 111 1122 3 1112233567799999999944
No 61
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.70 E-value=0.3 Score=51.23 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=81.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCC----Ccc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDG----QWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NN 119 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~----~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~ 119 (416)
++-.-+.+.|+.++++|+|+|=+-...+. .|. .+.+. ..|. ..+.|.++|++|+++||+|||++. ||
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G--~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYG--GPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccC--CHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 35566777899999999999988543211 121 11111 1122 256788999999999999999985 33
Q ss_pred cCcCCC-hhhHHHhhhhc-CCCCCCCcCcCCCH---HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe--ccCCCC
Q 014902 120 WDAYGG-KAQYVKWGKAA-GLNLTSDDEFFSHT---TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL--MNEPRC 192 (416)
Q Consensus 120 w~~~gg-~~~y~~w~~~~-G~~~~~~~~~~~~~---~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel--~NEp~~ 192 (416)
-...+. .+.|..|.... ..+... .-=+.++ .+++.+.+-++..++. |+ |-+|=+ .....-
T Consensus 185 ~~~~~~~~~~~~~y~~~~~~~~wg~-~~n~~~~~~~~vr~~i~~~~~~W~~e--------~~----iDGfR~D~~~~~~~ 251 (542)
T TIGR02402 185 FGPEGNYLPRYAPYFTDRYSTPWGA-AINFDGPGSDEVRRYILDNALYWLRE--------YH----FDGLRLDAVHAIAD 251 (542)
T ss_pred CCCccccccccCccccCCCCCCCCC-ccccCCCcHHHHHHHHHHHHHHHHHH--------hC----CcEEEEeCHHHhcc
Confidence 111010 11111121100 000000 1113455 7888888888888876 43 223322 211110
Q ss_pred CCCCChhHHHHHHHHHHHHhhhcCCC
Q 014902 193 TSDPSGDTLQSWIQEMAVYVKSIDAK 218 (416)
Q Consensus 193 ~~~~~~~~~~~w~~~~~~~Ir~~dp~ 218 (416)
.....+++++.+.+|++.|+
T Consensus 252 ------~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 252 ------TSAKHILEELAREVHELAAE 271 (542)
T ss_pred ------ccHHHHHHHHHHHHHHHCCC
Confidence 11246889999999999887
No 62
>smart00642 Aamy Alpha-amylase domain.
Probab=95.67 E-value=0.04 Score=48.39 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecC-C----CccccccCCC-CCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFND-G----QWRALQTSPS-VYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~-~----~~~~~~~~~g-~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++-..+.+.|+.++++|+|+|-+-...+ . .+..+.+... ..++ ...+.|.+++++|+++||+||+++.
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3567788889999999999998843311 1 1111111110 1111 1357889999999999999999997
No 63
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.63 E-value=0.38 Score=51.43 Aligned_cols=163 Identities=9% Similarity=0.158 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc-
Q 014902 54 KVSELFHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA- 122 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~- 122 (416)
..++.++.+|+||+|+|=+....+ ..|. .+.+. ..|. ..+.|.++|++|+++||+||+++. ||-..
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 445556899999999998844321 1221 01111 1121 257788999999999999999985 33110
Q ss_pred ------CCChhhH--HHhhhhcCCC--CCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEecc---C
Q 014902 123 ------YGGKAQY--VKWGKAAGLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMN---E 189 (416)
Q Consensus 123 ------~gg~~~y--~~w~~~~G~~--~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~N---E 189 (416)
+.|.+.| ..+. .|.. ..+..-=+.++++++...+-++..++.. .+-|.++-.-.+++-++-.- .
T Consensus 246 ~~~l~~~dg~~~y~~~~~~--~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~-~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADPR--KGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDF-HVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCCc--CCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHh-CCCeEEEeeehheeecccCccccc
Confidence 0111111 1000 0100 0011111357889988888888888752 12333232212332222111 1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 190 PRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 190 p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
|+............+++++...||+..|+.+++
T Consensus 323 ~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~i 355 (639)
T PRK14706 323 PNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMI 355 (639)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 111111111346678899999999999986543
No 64
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=95.53 E-value=0.57 Score=45.33 Aligned_cols=163 Identities=9% Similarity=0.043 Sum_probs=92.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCC---ccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQ---WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 126 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~---~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~ 126 (416)
.+.+.+++.++.|+.+|+|.+-++.-..-. .+.+....|.|.. +.+.++++.|+++||.||..+.. .|.+
T Consensus 14 ~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~----pGH~ 86 (301)
T cd06565 14 PKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQT----LGHL 86 (301)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCC----HHHH
Confidence 456889999999999999999885422111 1222233566774 55678889999999999988753 2333
Q ss_pred hhHHHhhhhcCC---CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC---CCCChhH
Q 014902 127 AQYVKWGKAAGL---NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT---SDPSGDT 200 (416)
Q Consensus 127 ~~y~~w~~~~G~---~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~---~~~~~~~ 200 (416)
....+|..-... +.....--.++|++.+..++.+++++.-.. -.-...+.|.. +.++--+.+. .....+.
T Consensus 87 ~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~-s~~~HIG~DE~---~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 87 EFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHP-SKYIHIGMDEA---YDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred HHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCC-CCeEEECCCcc---cccCCCHHHHHhcCCCHHHH
Confidence 222221100000 000112235678888888888888888610 00011122211 1221111110 0112356
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEec
Q 014902 201 LQSWIQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 201 ~~~w~~~~~~~Ir~~dp~~lV~~g 224 (416)
+..+++++.+.+|+..+ .++.-+
T Consensus 163 ~~~~~~~v~~~v~~~g~-~~~~W~ 185 (301)
T cd06565 163 YLEHLKKVLKIIKKRGP-KPMMWD 185 (301)
T ss_pred HHHHHHHHHHHHHHcCC-EEEEEh
Confidence 78899999999999987 344443
No 65
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.53 E-value=0.57 Score=53.30 Aligned_cols=166 Identities=15% Similarity=0.213 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecC----CCccccccC-----CCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFND----GQWRALQTS-----PSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA 122 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~----~~~~~~~~~-----~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~ 122 (416)
+..++.|+.+|+||+|+|=+..+.+ ..|. +++. ...|. ..+.|.++|++|+++||+|||++. ||...
T Consensus 766 ~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~ 842 (1224)
T PRK14705 766 ELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPK 842 (1224)
T ss_pred HHHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3445568999999999998855421 1231 1111 11222 257788999999999999999985 22110
Q ss_pred -------CCChhhHHHhhhhcCC--CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEecc-----
Q 014902 123 -------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMN----- 188 (416)
Q Consensus 123 -------~gg~~~y~~w~~~~G~--~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~N----- 188 (416)
+.|.+.|-.-....|. ...+..-=|.++++++...+-+...++.. .+.|.++---.+++-.+-.-
T Consensus 843 d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ey-hiDGfR~Dav~~mly~Dysr~~g~w 921 (1224)
T PRK14705 843 DSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEF-HIDGLRVDAVASMLYLDYSREEGQW 921 (1224)
T ss_pred chhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHh-CCCcEEEeehhhhhhcccccccccc
Confidence 1111111000000000 00010101567888888888888888871 11221111111222111111
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 189 EPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 189 Ep~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
.|+............+++++.+.|++..|+.+++
T Consensus 922 ~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~I 955 (1224)
T PRK14705 922 RPNRFGGRENLEAISFLQEVNATVYKTHPGAVMI 955 (1224)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 2332211111346789999999999999986543
No 66
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.17 E-value=1 Score=48.68 Aligned_cols=166 Identities=11% Similarity=0.173 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC-CcCc
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN-NWDA 122 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~-~w~~ 122 (416)
...++.|+.++++|+|+|=+....+ ..|. .+.+.+ .|. ..+.|.++|++|+++||+||+++.- |-..
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3445668999999999998854321 1121 111111 121 2567889999999999999999853 2111
Q ss_pred -------CCChhhHHHhhhhcCC--CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEec-cC---
Q 014902 123 -------YGGKAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELM-NE--- 189 (416)
Q Consensus 123 -------~gg~~~y~~w~~~~G~--~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~-NE--- 189 (416)
+.|...|.......|. ...+..-=|.+|++++...+-++..++.. .+.|.++-.-.+++..+-. ++
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~ey-hIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHY-HLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHh-CceEEEEcCHhHhhhhccccccccc
Confidence 1121112100000010 00000112557888888888888888761 1222222111222222111 11
Q ss_pred -CCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 190 -PRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 190 -p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
|+.......-....+++++.+.||+..|+.++.
T Consensus 426 ~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~I 459 (730)
T PRK12568 426 VPNAHGGRENLEAVAFLRQLNREIASQFPGVLTI 459 (730)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHHCCCeEEE
Confidence 111110111235678999999999999987544
No 67
>PLN02960 alpha-amylase
Probab=95.15 E-value=0.82 Score=49.93 Aligned_cols=162 Identities=7% Similarity=0.096 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCcCc-
Q 014902 54 KVSELFHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT-NNWDA- 122 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w~~- 122 (416)
..++.|..++++|+|+|=+..+.+ ..|. .+.+. ..|. ..+.|.++|++|+++||+|||++. ||-..
T Consensus 418 ~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 418 FTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFG--TPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 345679999999999998854321 1121 01111 1222 147789999999999999999985 32111
Q ss_pred -------CCChh-hHHHhhhhcCC--CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE--eccCC
Q 014902 123 -------YGGKA-QYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE--LMNEP 190 (416)
Q Consensus 123 -------~gg~~-~y~~w~~~~G~--~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~we--l~NEp 190 (416)
+.|.+ .|-. ....|. +.....-=|.++++++.+.+-++..++.. .+.|.++-.-.+++... ..+++
T Consensus 495 ~~~~L~~FDG~~~~Yf~-~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Ey-hIDGfR~DAV~sMlY~d~g~~~~~ 572 (897)
T PLN02960 495 EMVGLSLFDGSNDCYFH-SGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEY-RVDGFQFHSLGSMLYTHNGFASFT 572 (897)
T ss_pred cccchhhcCCCccceee-cCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHH-CCCceeecccceeeeeccCccccC
Confidence 11110 0100 000000 00011112457888888888888888762 23343333323333222 11111
Q ss_pred -------CCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEe
Q 014902 191 -------RCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 191 -------~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 223 (416)
+... ......+++++...|++..|+.+++.
T Consensus 573 G~~~~~~n~~~---d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 573 GDLDEYCNQYV---DRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CcccccCCccC---CchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 1111 23477899999999999889875543
No 68
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=95.03 E-value=0.78 Score=45.30 Aligned_cols=145 Identities=16% Similarity=0.223 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEee-ecCC--CccccccCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCC
Q 014902 53 GKVSELFHQASSAGLTVCRTWA-FNDG--QWRALQTSPSVYD----EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG 125 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~-~~~~--~~~~~~~~~g~~~----~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg 125 (416)
-+.++.++.+|++|++.+=+-+ +.|| .|+. .-..|+ .-.-+.+.+++++|+++||++.+.++. |+++-
T Consensus 91 fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S---~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~-~dw~~- 165 (346)
T PF01120_consen 91 FDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPS---KYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSP-WDWHH- 165 (346)
T ss_dssp --HHHHHHHHHHTT-SEEEEEEE-TT--BSS-----TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEES-SSCCC-
T ss_pred CCHHHHHHHHHHcCCCEEEeehhhcCccccCCC---CCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecc-hHhcC-
Confidence 3567889999999999886532 2232 1321 111122 122467889999999999999998863 22210
Q ss_pred hhhHHHhhhhcCCCCCCCcCcCCCHH-HHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHH
Q 014902 126 KAQYVKWGKAAGLNLTSDDEFFSHTT-LKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSW 204 (416)
Q Consensus 126 ~~~y~~w~~~~G~~~~~~~~~~~~~~-~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w 204 (416)
+.|..-...... .....--..++ ..+.+...+++|++| | +|.++=++....... ... -
T Consensus 166 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~------~~~--~ 224 (346)
T PF01120_consen 166 -PDYPPDEEGDEN--GPADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPD------EDW--D 224 (346)
T ss_dssp -TTTTSSCHCHHC--C--HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCC------THH--H
T ss_pred -cccCCCccCCcc--cccccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCccc------ccc--C
Confidence 000000000000 00000000112 234777899999999 9 788888888776522 111 1
Q ss_pred HHHHHHHhhhcCCCcEEEe
Q 014902 205 IQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 205 ~~~~~~~Ir~~dp~~lV~~ 223 (416)
..++.+.||++.|+.+|.-
T Consensus 225 ~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 225 SAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp HHHHHHHHHHHSTTSEEEC
T ss_pred HHHHHHHHHHhCCeEEEec
Confidence 2788999999999888763
No 69
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.75 Score=46.12 Aligned_cols=198 Identities=18% Similarity=0.293 Sum_probs=108.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCC---------ccccccCCCCC-ChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQ---------WRALQTSPSVY-DEEVFKALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~---------~~~~~~~~g~~-~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
.++.++.+.|+.++++|+|+|=+=+-.++. |...+ ||.. -+.+++-|-.+|++|+++||+|+.
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~a----- 133 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHA----- 133 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeee-----
Confidence 368899999999999999998653322221 21211 3322 244567778899999999999974
Q ss_pred cCcCCChh--------hHHHhhhhcCCC--CCCC----cCcCCC---HHHHHHHHHHHHHHHhcccccccccccCCC---
Q 014902 120 WDAYGGKA--------QYVKWGKAAGLN--LTSD----DEFFSH---TTLKSYYKAHVKTVLNRVNTFTNLTYKNDP--- 179 (416)
Q Consensus 120 w~~~gg~~--------~y~~w~~~~G~~--~~~~----~~~~~~---~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p--- 179 (416)
|..++.+. .++.|.....-. ...+ ..+|-| |++++...+.+..+|++ |.=|+
T Consensus 134 Wf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~--------YdvDGIQf 205 (418)
T COG1649 134 WFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN--------YDVDGIQF 205 (418)
T ss_pred chhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhC--------CCCCceec
Confidence 44333221 122222111000 0011 245554 78999999999999998 54442
Q ss_pred -cEeEEEe----------------ccCCCCCCC----CChhHHHHHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcC
Q 014902 180 -TIFAWEL----------------MNEPRCTSD----PSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAK 238 (416)
Q Consensus 180 -~I~~wel----------------~NEp~~~~~----~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~ 238 (416)
.++.|.+ ++.|-.... .-.+...+++.+++..||++.|+..+++... +.... ..
T Consensus 206 Dd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp~---n~~~~--~~ 280 (418)
T COG1649 206 DDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSPF---NPLGS--AT 280 (418)
T ss_pred ceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEccC---CCCCc--cc
Confidence 1332111 111110000 0012234457788999999999998887541 10000 00
Q ss_pred CCcCcccccccchhhhhhCCCCCcEEEEeecCC
Q 014902 239 FNPNSYATQVGTDFIRNHQTLGVDFASVHIYAD 271 (416)
Q Consensus 239 ~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~ 271 (416)
.+ |. ....|+..=.....||++....|..
T Consensus 281 f~---y~-~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 281 FA---YD-YFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred ee---hh-hhhhhHHHHHHcccHhhhhhhhhcc
Confidence 00 20 0113443322357889988888854
No 70
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=94.59 E-value=2.1 Score=41.44 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCc-------cccc---------cCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQW-------RALQ---------TSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~-------~~~~---------~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+++.++.|+..++|++-++.-.+..| |.+. +..|.|. -+.+.++++.|+++||.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEEE
Confidence 467899999999999999998866444334 2221 1123455 35667899999999999998
Q ss_pred ecCCCcCcCCChhhHHHhhhhcCCC------CC--CCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe
Q 014902 115 SLTNNWDAYGGKAQYVKWGKAAGLN------LT--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL 186 (416)
Q Consensus 115 ~l~~~w~~~gg~~~y~~w~~~~G~~------~~--~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel 186 (416)
.+.. .|.+.....+....+.+ .. ...--.++|++.+..++.+++++.- |. .+.| -|
T Consensus 91 EiD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~-~~~i---Hi 154 (303)
T cd02742 91 EIDM----PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FP-DRYL---HI 154 (303)
T ss_pred eccc----hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CC-CCeE---Ee
Confidence 8852 13332111111000100 00 1112345788888888888888886 42 2222 12
Q ss_pred -ccCCCCCCCCChhHHHHHHHHHHHHhhhcC
Q 014902 187 -MNEPRCTSDPSGDTLQSWIQEMAVYVKSID 216 (416)
Q Consensus 187 -~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~d 216 (416)
+=|..... ...+.+..+++++.+.+++..
T Consensus 155 GgDE~~~~~-~~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 155 GGDEAHFKQ-DRKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred cceecCCCC-CHHHHHHHHHHHHHHHHHHcC
Confidence 22222111 113457788899999999876
No 71
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.51 E-value=0.052 Score=51.91 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCC--CccccccCCC-CCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDG--QWRALQTSPS-VYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~--~~~~~~~~~g-~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.-+.+-|+.++++|+|+|-+-.+.+. .+..+.+... ..++ ...+.|.++|++|+++||+||+++.
T Consensus 4 ~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 4 RGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 45667799999999999988433211 1111111110 1111 2367889999999999999999985
No 72
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.47 E-value=1.3 Score=48.06 Aligned_cols=165 Identities=8% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecC----CCcc-----ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC-CcCc-
Q 014902 54 KVSELFHQASSAGLTVCRTWAFND----GQWR-----ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN-NWDA- 122 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~----~~~~-----~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~-~w~~- 122 (416)
..++.|..++++|+|+|=+-...+ ..|. .+.+.+ .|. ..+.|.++|++|+++||+||+++.- |-..
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 356779999999999998844321 1121 011111 111 1467889999999999999999852 2110
Q ss_pred -CCChhhH----HHhhhhc--CCC--CCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE------ec
Q 014902 123 -YGGKAQY----VKWGKAA--GLN--LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE------LM 187 (416)
Q Consensus 123 -~gg~~~y----~~w~~~~--G~~--~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~we------l~ 187 (416)
..|...+ ..|.... |.. .....-=|.++++++...+-++..++.. .+-|.++-.-.+++-.. ..
T Consensus 329 ~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey-~IDGfRfDaV~smlY~~hg~~~~f~ 407 (758)
T PLN02447 329 TLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY-KFDGFRFDGVTSMLYHHHGLQMAFT 407 (758)
T ss_pred ccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh-CcccccccchhhhhccccCcccccc
Confidence 0011000 0111100 000 0000112457888888888888888752 12233332222332111 11
Q ss_pred -cCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 188 -NEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 188 -NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
|...............+++.+...|++..|+.+++
T Consensus 408 ~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~I 443 (758)
T PLN02447 408 GNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTI 443 (758)
T ss_pred cCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEE
Confidence 11111111112346778999999999999987543
No 73
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.82 E-value=3 Score=40.82 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=87.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcc-------ccc--------------------cCCCCCChHHHHHHHHHHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQ--------------------TSPSVYDEEVFKALDFVIS 103 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~-------~~~--------------------~~~g~~~~~~l~~lD~~l~ 103 (416)
..+.+++.++.|+..++|++-++. +| .|+ .+. ...+.|. -+.+..+++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHl-tD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~ 89 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHL-ND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIA 89 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEee-cC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHH
Confidence 467899999999999999997744 34 221 100 1123454 466789999
Q ss_pred HHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCC-----CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccC-
Q 014902 104 EAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNL-----TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN- 177 (416)
Q Consensus 104 ~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~-----~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~- 177 (416)
.|+++||.||..+.. .|.+.....+....+.+. ....--.++|++.+..++.+++++.- |..
T Consensus 90 yA~~rgI~vIPEID~----PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~~~ 157 (326)
T cd06564 90 YAKDRGVNIIPEIDS----PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FNPK 157 (326)
T ss_pred HHHHcCCeEeccCCC----cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cCCC
Confidence 999999999988752 133322111111111110 11112356788888888999998887 442
Q ss_pred CCcEeEEEe-ccCCCCCCCCChhHHHHHHHHHHHHhhhcCC
Q 014902 178 DPTIFAWEL-MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDA 217 (416)
Q Consensus 178 ~p~I~~wel-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp 217 (416)
.+.| -| +=|.... ....+.+..+++++.+.|++..-
T Consensus 158 ~~~~---HiGgDE~~~~-~~~~~~~~~f~~~~~~~v~~~gk 194 (326)
T cd06564 158 SDTV---HIGADEYAGD-AGYAEAFRAYVNDLAKYVKDKGK 194 (326)
T ss_pred CCEE---Eecccccccc-CccHHHHHHHHHHHHHHHHHcCC
Confidence 2222 12 1122211 11235678899999999998853
No 74
>PLN02361 alpha-amylase
Probab=92.46 E-value=0.75 Score=46.26 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=54.0
Q ss_pred ECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCC-CccccccCC-CCCCh--HHHHHHHHHH
Q 014902 27 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSP-SVYDE--EVFKALDFVI 102 (416)
Q Consensus 27 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~-~~~~~~~~~-g~~~~--~~l~~lD~~l 102 (416)
-+|..+.+-|+|... . . ..--..+.+.++.++++|+++|=+-...+. ....+.+.. ...++ ...+.|..+|
T Consensus 8 ~~~~~v~lQ~F~W~~-~-~---~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li 82 (401)
T PLN02361 8 RNGREILLQAFNWES-H-K---HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLL 82 (401)
T ss_pred cCCCcEEEEEEeccC-C-c---cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHH
Confidence 457888999998421 1 1 112357788899999999999876332211 011111110 01111 1246789999
Q ss_pred HHHHHcCCEEEEecC
Q 014902 103 SEAKKYKIRLILSLT 117 (416)
Q Consensus 103 ~~a~~~Gi~vil~l~ 117 (416)
++|+++||+||+++.
T Consensus 83 ~~~h~~gi~vi~D~V 97 (401)
T PLN02361 83 RKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHcCCEEEEEEc
Confidence 999999999999985
No 75
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=92.34 E-value=2.6 Score=40.89 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhh
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKA 135 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~ 135 (416)
.+..+.+|+.|+..||++-- ++ .+|.+..--||.|++.+-|. . . .. .
T Consensus 16 ~~vv~l~ks~~i~~vri~d~---------------~~-------~iL~a~a~S~i~v~v~vpN~--~---l---~~-l-- 62 (310)
T PF00332_consen 16 CKVVSLLKSNGITKVRIYDA---------------DP-------SILRAFAGSGIEVMVGVPNE--D---L---AS-L-- 62 (310)
T ss_dssp HHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEEEE-GG--G---H---HH-H--
T ss_pred HHHHHHHHhcccccEEeecC---------------cH-------HHHHHHhcCCceeeeccChH--H---H---HH-h--
Confidence 56677788999999999421 22 34667778999999998742 1 0 00 0
Q ss_pred cCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhh-
Q 014902 136 AGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKS- 214 (416)
Q Consensus 136 ~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~- 214 (416)
...+.....+++.=+.. |...-.|....++||.-..... ..+..-++.+..++++
T Consensus 63 --------------a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~~~--~~lvpAm~ni~~aL~~~ 118 (310)
T PF00332_consen 63 --------------ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGTDN--AYLVPAMQNIHNALTAA 118 (310)
T ss_dssp --------------HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCSGG--GGHHHHHHHHHHHHHHT
T ss_pred --------------ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCccc--eeeccHHHHHHHHHHhc
Confidence 11123344555554444 5555568888999998875421 2344555666666664
Q ss_pred -cCCCcEEEec
Q 014902 215 -IDAKHLVEIG 224 (416)
Q Consensus 215 -~dp~~lV~~g 224 (416)
++...-|++.
T Consensus 119 ~L~~~IkVst~ 129 (310)
T PF00332_consen 119 GLSDQIKVSTP 129 (310)
T ss_dssp T-TTTSEEEEE
T ss_pred CcCCcceeccc
Confidence 3444555554
No 76
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=92.22 E-value=9.5 Score=37.69 Aligned_cols=109 Identities=12% Similarity=0.078 Sum_probs=66.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccc-------cccC-----CCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRA-------LQTS-----PSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~-------~~~~-----~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
..+.+++.++.|+..++|++-++.-.+..|+. +... .|.|. -+.+..+++.|+++||.||..+..
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT---~~di~eiv~yA~~rgI~vIPEID~ 92 (348)
T cd06562 16 SVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYT---PEDVKEIVEYARLRGIRVIPEIDT 92 (348)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceEC---HHHHHHHHHHHHHcCCEEEEeccC
Confidence 35789999999999999999886544444431 1100 12344 466789999999999999988852
Q ss_pred CcCcCCChhhHHHhhhhcCCCC-----------CCCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 119 NWDAYGGKAQYVKWGKAAGLNL-----------TSDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 119 ~w~~~gg~~~y~~w~~~~G~~~-----------~~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
.|.+.....+....+... ....--.++|++.+..++.++++++-
T Consensus 93 ----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 93 ----PGHTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred ----chhhHHHHHhChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 132221111110001100 00111234678888888888888876
No 77
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.22 E-value=8.1 Score=38.29 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcc-------cccc---------------------CCCCCChHHHHHHHHHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT---------------------SPSVYDEEVFKALDFVI 102 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~-------~~~~---------------------~~g~~~~~~l~~lD~~l 102 (416)
..+.+++.++.|+..++|++-++...+..|+ .+.. ..|.|. -+.+.+++
T Consensus 16 ~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv 92 (357)
T cd06563 16 PVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIV 92 (357)
T ss_pred CHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHH
Confidence 3678999999999999999988765443442 1110 012344 46778999
Q ss_pred HHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCC-----------CCCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 103 SEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNL-----------TSDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 103 ~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~-----------~~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
+.|+++||.||..+.. .|.+.....+...-+... ....--..+|++.+..++.++++++-
T Consensus 93 ~yA~~rgI~VIPEID~----PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E~~~l 163 (357)
T cd06563 93 AYAAERGITVIPEIDM----PGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDEVAEL 163 (357)
T ss_pred HHHHHcCCEEEEecCC----chhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHHHHHh
Confidence 9999999999988752 133321111110000000 00111245678888888888888875
No 78
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=91.89 E-value=0.43 Score=49.37 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCC----CccccccCC----------CCCChH--HHHHHHHHHHHHHHcCCEEEEec
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDG----QWRALQTSP----------SVYDEE--VFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~----~~~~~~~~~----------g~~~~~--~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
..+.+-|+.++++|+|+|=+-..... .+..+.+.. |..++. ..+.|..+|++|+++||+||+++
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45778899999999998866332111 012222211 112221 35678999999999999999998
Q ss_pred C
Q 014902 117 T 117 (416)
Q Consensus 117 ~ 117 (416)
.
T Consensus 102 V 102 (479)
T PRK09441 102 V 102 (479)
T ss_pred C
Confidence 5
No 79
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=91.86 E-value=2.4 Score=44.95 Aligned_cols=163 Identities=13% Similarity=0.181 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecC----CCcccccc----CC-CCCChHHHHHHHHHHHHHHHcCCEEEEecC-CCc
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFND----GQWRALQT----SP-SVYDEEVFKALDFVISEAKKYKIRLILSLT-NNW 120 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~----~~~~~~~~----~~-g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~-~~w 120 (416)
..+..++-|..+++||+|+|=+....+ ..|- +|+ +| ..|. .-+.|.++||+|+++||-|||+.. +|.
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWG-Yq~~g~yAp~sryG--tPedfk~fVD~aH~~GIgViLD~V~~HF 239 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWG-YQGTGYYAPTSRYG--TPEDFKALVDAAHQAGIGVILDWVPNHF 239 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCC-CCcceeccccccCC--CHHHHHHHHHHHHHcCCEEEEEecCCcC
Confidence 567889999999999999999965432 2331 111 11 1121 134567899999999999999975 332
Q ss_pred Cc-------CCChhhHHH--hhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEE-------
Q 014902 121 DA-------YGGKAQYVK--WGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW------- 184 (416)
Q Consensus 121 ~~-------~gg~~~y~~--w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~w------- 184 (416)
.. +.|...|.. +......+..+...++..++++..+..-+..-++.. .+.|.++---++++-.
T Consensus 240 ~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~y-HiDGlRvDAV~smly~d~~~~~~ 318 (628)
T COG0296 240 PPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEY-HIDGLRVDAVASMLYLDYSRAEG 318 (628)
T ss_pred CCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHh-CCcceeeehhhhhhccchhhhhh
Confidence 21 112211110 000000011122233435566666655555555541 1223222222222222
Q ss_pred -EeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcE
Q 014902 185 -ELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHL 220 (416)
Q Consensus 185 -el~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~l 220 (416)
.+-||..... .-...++++++...|+..-|..+
T Consensus 319 ~~~~n~~ggr~---n~~a~efl~~~n~~i~~~~pg~~ 352 (628)
T COG0296 319 EWVPNEYGGRE---NLEAAEFLRNLNSLIHEEEPGAM 352 (628)
T ss_pred cccccccCCcc---cHHHHHHhhhhhhhhcccCCCce
Confidence 2333332211 13466788899999988777663
No 80
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.46 E-value=0.7 Score=48.63 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCC--ccccccCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQ--WRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~--~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++-.-+.+.|+.++++|+++|=+-.+.... ...+.+.. -..++ ...+.|+.+|++|+++||+||+++.
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 356677788999999999999773331110 00010000 00111 1257889999999999999999995
No 81
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=91.43 E-value=1.5 Score=41.90 Aligned_cols=90 Identities=13% Similarity=0.250 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCc---CCChh
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA---YGGKA 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~---~gg~~ 127 (416)
+..++.+.-+.+++.|+|.+=+ ++.. ..+-...++.++.+-++-+..+.+||+|.|++. +.. .||.+
T Consensus 55 ~~~R~~~YARllASiGINgvvl---NNVN-----a~~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvn--FasP~~lggL~ 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVL---NNVN-----ANPKLLTPEYLDKVARLADVFRPYGIKVYLSVN--FASPIELGGLP 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE----S-SS-------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE---TTHHHHTTS-S
T ss_pred chhHHHHHHHHHhhcCCceEEe---cccc-----cChhhcCHHHHHHHHHHHHHHhhcCCEEEEEee--ccCCcccCCcC
Confidence 4578999999999999999877 3322 122345566799999999999999999999985 221 13321
Q ss_pred hHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 128 QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 128 ~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
. . =-.||++++++++-+++|-++
T Consensus 125 T---------------a-DPld~~V~~WW~~k~~eIY~~ 147 (328)
T PF07488_consen 125 T---------------A-DPLDPEVRQWWKDKADEIYSA 147 (328)
T ss_dssp -------------------TTSHHHHHHHHHHHHHHHHH
T ss_pred c---------------C-CCCCHHHHHHHHHHHHHHHHh
Confidence 1 1 134789999998888888555
No 82
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=91.34 E-value=0.64 Score=48.83 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=44.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCC--ccccccCC-CCCChH--HHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQ--WRALQTSP-SVYDEE--VFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~--~~~~~~~~-g~~~~~--~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++-.-+.+-|+.++++|+|+|=+-.+.... -..+.+.. -.+++. ..+.+.++|++|+++||+||+++.
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 466778888999999999998773322110 00011000 012221 257889999999999999999985
No 83
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=91.16 E-value=1.2 Score=43.84 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc------CCC---------CCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT------SPS---------VYDEEVFKALDFVISEAKKYKIRLILS 115 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~------~~g---------~~~~~~l~~lD~~l~~a~~~Gi~vil~ 115 (416)
..+.+++.++.|+..++|++-++...+..|+.--+ ..| .|. -+.+.++++.|+++||.||..
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT---~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYT---KEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBE---HHHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCC---HHHHHHHHHHHHHcCCceeee
Confidence 45789999999999999999886654433321100 112 344 366789999999999999988
Q ss_pred cCCCcCcCCChhhHHHhhhhcCCC---C----------C--CCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCc
Q 014902 116 LTNNWDAYGGKAQYVKWGKAAGLN---L----------T--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPT 180 (416)
Q Consensus 116 l~~~w~~~gg~~~y~~w~~~~G~~---~----------~--~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~ 180 (416)
+.. .|.+.....+....+.. . . ...--.++|++.+..++.+++++.- +. .+.
T Consensus 93 id~----PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~~~ 159 (351)
T PF00728_consen 93 IDT----PGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-SKY 159 (351)
T ss_dssp EEE----SSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-SSE
T ss_pred ccC----chHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-CCe
Confidence 752 24443222221111110 0 0 0112345788989889999998887 55 333
Q ss_pred EeEEEe-ccCCCCCCCCC----------------hhHHHHHHHHHHHHhhhcCCCcEEEe
Q 014902 181 IFAWEL-MNEPRCTSDPS----------------GDTLQSWIQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 181 I~~wel-~NEp~~~~~~~----------------~~~~~~w~~~~~~~Ir~~dp~~lV~~ 223 (416)
| -| +-|........ .+.+..+++++.+.+++...+ ++.-
T Consensus 160 i---HiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~-~~~W 215 (351)
T PF00728_consen 160 I---HIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK-PIIW 215 (351)
T ss_dssp E---EEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE-EEEE
T ss_pred E---EeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc-EEEE
Confidence 3 23 45554210000 123445678888999988766 4443
No 84
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=91.11 E-value=0.76 Score=48.29 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=43.9
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCC-C-ccccccCC-CCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDG-Q-WRALQTSP-SVYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~-~-~~~~~~~~-g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++-.-+.+-|+.++++|+|+|=+-.+... . ...+.+.. -.+++ ..++.|..+|++|+++||+||+++.
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 35567788899999999999977332110 0 00110000 01111 1357889999999999999999985
No 85
>PRK03705 glycogen debranching enzyme; Provisional
Probab=90.96 E-value=0.52 Score=50.55 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHcCCCEEEEeeecCC------------C-c--c---ccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 58 LFHQASSAGLTVCRTWAFNDG------------Q-W--R---ALQTSPSVYD---EEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 58 dl~~~~~~G~n~vRi~~~~~~------------~-~--~---~~~~~~g~~~---~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
.|+.+++||+|+|=+-...+- . | . .+.+. +.|. +..++.|.++|++|+++||+||+++
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALD-PAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 499999999999988443210 0 1 0 01111 1221 1246789999999999999999998
Q ss_pred C
Q 014902 117 T 117 (416)
Q Consensus 117 ~ 117 (416)
.
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 5
No 86
>PRK09505 malS alpha-amylase; Reviewed
Probab=90.57 E-value=0.93 Score=48.78 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCC----------------CccccccCC-CCCChH--HHHHHHHHHHHHHHcCCE
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDG----------------QWRALQTSP-SVYDEE--VFKALDFVISEAKKYKIR 111 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~----------------~~~~~~~~~-g~~~~~--~l~~lD~~l~~a~~~Gi~ 111 (416)
+-.-+.+-|+.+++||+|+|=|-...+. .++.+.+.. ...|+. ..+.|+.+|++|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445778899999999999866322110 001111100 011221 367889999999999999
Q ss_pred EEEecC
Q 014902 112 LILSLT 117 (416)
Q Consensus 112 vil~l~ 117 (416)
||+++.
T Consensus 308 VilD~V 313 (683)
T PRK09505 308 ILFDVV 313 (683)
T ss_pred EEEEEC
Confidence 999985
No 87
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=90.55 E-value=8 Score=37.88 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcc-------cccc----------CCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQT----------SPSVYDEEVFKALDFVISEAKKYKIRLI 113 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~-------~~~~----------~~g~~~~~~l~~lD~~l~~a~~~Gi~vi 113 (416)
+.+.+.+.++.|+..++|++-++.-.+..|+ .+.. ..|.|. -+.+.++++.|+++||.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 4688999999999999999988665444442 2211 113455 4567889999999999999
Q ss_pred EecCCCcCcCCChhh----HHHhhhhcCCCC--------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcE
Q 014902 114 LSLTNNWDAYGGKAQ----YVKWGKAAGLNL--------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTI 181 (416)
Q Consensus 114 l~l~~~w~~~gg~~~----y~~w~~~~G~~~--------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I 181 (416)
..+.- .|.+.. |+.-.. .+... ....--.++|++.+..++.+++++.- +. .+.|
T Consensus 93 PEiD~----PGH~~a~~~~~p~l~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~-~~~i 158 (329)
T cd06568 93 PEIDM----PGHTNAALAAYPELNC-DGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TP-GPYI 158 (329)
T ss_pred EecCC----cHHHHHHHHhChhhcc-CCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CC-CCeE
Confidence 88852 132211 221100 01000 00111245788888888888888775 53 2322
Q ss_pred eEEEe-ccCCCCCCCCChhHHHHHHHHHHHHhhhcCC
Q 014902 182 FAWEL-MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDA 217 (416)
Q Consensus 182 ~~wel-~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp 217 (416)
-| +=|.... ..+.+..+++++.+.+++...
T Consensus 159 ---HiGgDE~~~~---~~~~~~~f~~~~~~~v~~~Gk 189 (329)
T cd06568 159 ---HIGGDEAHST---PHDDYAYFVNRVRAIVAKYGK 189 (329)
T ss_pred ---EEecccCCCC---chHHHHHHHHHHHHHHHHCCC
Confidence 23 3344432 135677888999999987763
No 88
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=90.41 E-value=6.5 Score=39.38 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCCEEEEee-ecCC--CccccccCCCCCCh----HHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh
Q 014902 54 KVSELFHQASSAGLTVCRTWA-FNDG--QWRALQTSPSVYDE----EVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK 126 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~-~~~~--~~~~~~~~~g~~~~----~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~ 126 (416)
+.++.++.+|++|++.+=+-+ +.|+ .|+. ....||- -.-+.+.++.++|+++||++-+.+.. |++. .
T Consensus 82 D~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S---~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~--~ 155 (384)
T smart00812 82 DPEEWADLFKKAGAKYVVLTAKHHDGFCLWDS---KYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWF--N 155 (384)
T ss_pred CHHHHHHHHHHcCCCeEEeeeeecCCccccCC---CCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhC--C
Confidence 457889999999999886633 2222 1221 1011110 02467789999999999999997652 2221 0
Q ss_pred hhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHH
Q 014902 127 AQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQ 206 (416)
Q Consensus 127 ~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~ 206 (416)
+.|..- .... ..........+..+.+...+++|+++ |+. .++=++...+-.. . . --..
T Consensus 156 p~y~~~---~~~~-~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~~------~-~-~~~~ 213 (384)
T smart00812 156 PLYAGP---TSSD-EDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAPD------D-Y-WRSK 213 (384)
T ss_pred Cccccc---cccc-cccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCcc------c-h-hcHH
Confidence 111100 0000 00011111223333348899999999 976 6776666443111 1 1 1256
Q ss_pred HHHHHhhhcCCCc
Q 014902 207 EMAVYVKSIDAKH 219 (416)
Q Consensus 207 ~~~~~Ir~~dp~~ 219 (416)
++.+.||++.|+.
T Consensus 214 ~l~~~~~~~qP~~ 226 (384)
T smart00812 214 EFLAWLYNLSPVK 226 (384)
T ss_pred HHHHHHHHhCCCC
Confidence 7889999999987
No 89
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.36 E-value=10 Score=36.90 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=47.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcc-------ccc-c-C-CCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWR-------ALQ-T-S-PSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~-------~~~-~-~-~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
..+.+++.|+.|+..++|++-++.-.+..|+ .+. . + .+.|. -+.+..+++.|+++||.||..+.
T Consensus 16 ~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 16 PVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEID 89 (311)
T ss_pred CHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEeec
Confidence 3578999999999999999988665444453 221 0 1 12465 35667899999999999998885
No 90
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=88.73 E-value=1.5 Score=50.15 Aligned_cols=98 Identities=6% Similarity=0.015 Sum_probs=61.5
Q ss_pred cEEEeCCeEEECC-eEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeec-CCC-ccccccCC-CCCCh
Q 014902 17 MVQKQGNQFVVND-QPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFN-DGQ-WRALQTSP-SVYDE 92 (416)
Q Consensus 17 fv~~~g~~f~~~G-~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~-~~~-~~~~~~~~-g~~~~ 92 (416)
++.|. -.+.+|| +..-+-|++..-.- +---+.-..+++.|+.++++|+|+|=+-.+. -+. -+.+.-.+ -.+|+
T Consensus 98 y~~V~-P~L~i~~~~~lPl~~i~iqTvl--sK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP 174 (1464)
T TIGR01531 98 YFVVL-PMLYINADKFLPLDSIALQTVL--AKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQ 174 (1464)
T ss_pred EEEeC-CeeEECCCcccCcCceeeeeeh--hhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcCh
Confidence 44444 5677888 88888888864211 1011234789999999999999999884432 110 00000000 01233
Q ss_pred ------HHHHHHHHHHHHHHHc-CCEEEEecC
Q 014902 93 ------EVFKALDFVISEAKKY-KIRLILSLT 117 (416)
Q Consensus 93 ------~~l~~lD~~l~~a~~~-Gi~vil~l~ 117 (416)
...+.+.++|+.|++. ||++|+++.
T Consensus 175 ~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 175 HFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred hhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 2357789999999995 999999985
No 91
>PLN00196 alpha-amylase; Provisional
Probab=88.55 E-value=1.6 Score=44.43 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=50.1
Q ss_pred EEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCC-CccccccCC-CCCCh---HHHHHHHHHHHHH
Q 014902 31 PFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSP-SVYDE---EVFKALDFVISEA 105 (416)
Q Consensus 31 ~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~-~~~~~~~~~-g~~~~---~~l~~lD~~l~~a 105 (416)
.+.+-|++. -... ..+..-..+.+.|..++++|+++|=+-..... ..+.+.+.. ...++ .-.+.|..+|++|
T Consensus 25 ~v~~Q~F~W--~~~~-~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~a 101 (428)
T PLN00196 25 QVLFQGFNW--ESWK-QNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAF 101 (428)
T ss_pred CEEEEeecc--CCCC-CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHH
Confidence 356778772 1111 11223566889999999999999866322111 111111110 11121 1236788999999
Q ss_pred HHcCCEEEEecC
Q 014902 106 KKYKIRLILSLT 117 (416)
Q Consensus 106 ~~~Gi~vil~l~ 117 (416)
+++||+||+++.
T Consensus 102 H~~GIkVilDvV 113 (428)
T PLN00196 102 HGKGVQVIADIV 113 (428)
T ss_pred HHCCCEEEEEEC
Confidence 999999999984
No 92
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=88.35 E-value=16 Score=35.91 Aligned_cols=129 Identities=14% Similarity=0.200 Sum_probs=77.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
+.+.+.+.++.+++.|+.+==+|. |..|.. ....-.+|++.+.....+++..++.|+++++.++..-..-.+.+.|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~ 98 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWL--DIEHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYK 98 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ChHHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHH
Confidence 568899999999999988655543 222210 00112456667777788999999999999998763211001122332
Q ss_pred HhhhhcCC--------CC-------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCC
Q 014902 131 KWGKAAGL--------NL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 192 (416)
Q Consensus 131 ~w~~~~G~--------~~-------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~ 192 (416)
.= ...|. +. ...--=|+||+++++|.+.++.+... .+.+....|.=+|||..
T Consensus 99 e~-~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~---------~~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 99 EA-KDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYK---------GSTENLYIWNDMNEPSV 165 (339)
T ss_pred HH-HHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhc---------ccCCCceEEeccCCccc
Confidence 21 11111 00 00111367899999999998887653 22333455777999874
No 93
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=88.24 E-value=0.95 Score=48.27 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCCEEEEeeecCC------------Cccc-----cccCCCCC--C----hHHHHHHHHHHHHHHHcCCEEE
Q 014902 57 ELFHQASSAGLTVCRTWAFNDG------------QWRA-----LQTSPSVY--D----EEVFKALDFVISEAKKYKIRLI 113 (416)
Q Consensus 57 ~dl~~~~~~G~n~vRi~~~~~~------------~~~~-----~~~~~g~~--~----~~~l~~lD~~l~~a~~~Gi~vi 113 (416)
+-|+.+++||+|+|=+-...+. .|.. +.+. +.| + ....+.|.++|++|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4599999999999988443211 1210 0111 011 1 1125789999999999999999
Q ss_pred EecC-CCcCcCCChhhH----HHhh---hhcCCCCCC---CcC-cCCCHHHHHHHHHHHHHHHhcccccccccccCCCcE
Q 014902 114 LSLT-NNWDAYGGKAQY----VKWG---KAAGLNLTS---DDE-FFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTI 181 (416)
Q Consensus 114 l~l~-~~w~~~gg~~~y----~~w~---~~~G~~~~~---~~~-~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I 181 (416)
+++. ||-.. +....+ +.|. ...|..... .++ -..+|.+++...+.++..++. |+=+-
T Consensus 247 lDvV~NH~~~-~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDG-- 315 (605)
T TIGR02104 247 MDVVYNHTYS-REESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDG-- 315 (605)
T ss_pred EEEEcCCccC-CCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCE--
Confidence 9985 32110 000000 0010 000100000 011 134688888888888888876 53221
Q ss_pred eEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEE
Q 014902 182 FAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 221 (416)
Q Consensus 182 ~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 221 (416)
+-++++.... ..+++++.+.+|++.|+..+
T Consensus 316 fR~D~~~~~~----------~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 316 FRFDLMGIHD----------IETMNEIRKALNKIDPNILL 345 (605)
T ss_pred EEEechhcCC----------HHHHHHHHHHHHhhCCCeEE
Confidence 1123342211 24567888888888887654
No 94
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=88.14 E-value=0.99 Score=41.73 Aligned_cols=58 Identities=29% Similarity=0.333 Sum_probs=34.3
Q ss_pred HHHHHHHHhcccccccccccCC---CcEeEEEeccCCCCCC----C--C---ChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 157 KAHVKTVLNRVNTFTNLTYKND---PTIFAWELMNEPRCTS----D--P---SGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 157 ~~~v~~~v~R~N~~tg~~y~~~---p~I~~wel~NEp~~~~----~--~---~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
.++|..|+++ |+.. -.|-.|.|-|||..-. + + +.+.+..=.-+++++||++||+..|.
T Consensus 107 ~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~ 176 (239)
T PF12891_consen 107 DEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF 176 (239)
T ss_dssp HHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE
T ss_pred HHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe
Confidence 3456667777 5553 2588999999998531 1 1 22344444557789999999999875
No 95
>PLN02784 alpha-amylase
Probab=88.10 E-value=3 Score=45.59 Aligned_cols=87 Identities=13% Similarity=0.029 Sum_probs=53.8
Q ss_pred ECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCC-CccccccCC-CCCChH--HHHHHHHHH
Q 014902 27 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSP-SVYDEE--VFKALDFVI 102 (416)
Q Consensus 27 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~-~~~~~~~~~-g~~~~~--~l~~lD~~l 102 (416)
-+|..+.+.|+|.. ....+ .--..+.+.++.++++|+|+|=+-..... ....+.+.. ...++. -.+.|..+|
T Consensus 499 ~~~~eVmlQgF~Wd-s~~dg---~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI 574 (894)
T PLN02784 499 GSGFEILCQGFNWE-SHKSG---RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLV 574 (894)
T ss_pred cCCceEEEEeEEcC-cCCCC---chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHH
Confidence 35778889999932 11111 11356788899999999999866332211 001111111 011111 246788999
Q ss_pred HHHHHcCCEEEEecC
Q 014902 103 SEAKKYKIRLILSLT 117 (416)
Q Consensus 103 ~~a~~~Gi~vil~l~ 117 (416)
++|+++||+||+++.
T Consensus 575 ~a~H~~GIkVIlDiV 589 (894)
T PLN02784 575 KSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHCCCEEEEEEC
Confidence 999999999999985
No 96
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=87.51 E-value=31 Score=34.75 Aligned_cols=176 Identities=14% Similarity=0.172 Sum_probs=90.7
Q ss_pred EEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc----CCC--CCChHHH-HHHHHHHHH
Q 014902 32 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT----SPS--VYDEEVF-KALDFVISE 104 (416)
Q Consensus 32 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~----~~g--~~~~~~l-~~lD~~l~~ 104 (416)
..+.|.|.|+..... .+.+.+.+.++.++++|++.+=| |..|..-.. .-| ..+++.| ..|..+++.
T Consensus 40 ~~pv~~nsW~~~~~d---~~e~~i~~~a~~~~~~G~e~fvi----DDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~ 112 (394)
T PF02065_consen 40 PPPVGWNSWEAYYFD---ITEEKILELADAAAELGYEYFVI----DDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADY 112 (394)
T ss_dssp S--EEEESHHHHTTG-----HHHHHHHHHHHHHHT-SEEEE-----SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHH
T ss_pred CCceEEEcccccCcC---CCHHHHHHHHHHHHHhCCEEEEE----cCccccccCCCcccCCceeEChhhhCCcHHHHHHH
Confidence 356789976433221 35788999999999999997655 334532110 011 2233333 458899999
Q ss_pred HHHcCCEEEEecCCCc--CcCCChhhHHHhhhhc-CCCC-CCCc---CcCCCHHHHHHHHHHHHHHHhcccccccccccC
Q 014902 105 AKKYKIRLILSLTNNW--DAYGGKAQYVKWGKAA-GLNL-TSDD---EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN 177 (416)
Q Consensus 105 a~~~Gi~vil~l~~~w--~~~gg~~~y~~w~~~~-G~~~-~~~~---~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~ 177 (416)
+++.||+.-|=+...- ..+.=...+|.|.... +.+. .... --+++|++++...+.+..+++. ++=
T Consensus 113 i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~--------~gi 184 (394)
T PF02065_consen 113 IHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE--------WGI 184 (394)
T ss_dssp HHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------TT-
T ss_pred HHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------cCC
Confidence 9999999977552100 0000011245664321 1100 0111 1257899999999988888876 321
Q ss_pred CCcEeEEEeccCCCCCCCCC-hhHHHHH---HHHHHHHhhhcCCCcEEEec
Q 014902 178 DPTIFAWELMNEPRCTSDPS-GDTLQSW---IQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 178 ~p~I~~wel~NEp~~~~~~~-~~~~~~w---~~~~~~~Ir~~dp~~lV~~g 224 (416)
.-+=|+..-......... ++...+. +-++.+.||+.-|+.+|-.-
T Consensus 185 --dYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~C 233 (394)
T PF02065_consen 185 --DYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENC 233 (394)
T ss_dssp --SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-
T ss_pred --CEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEec
Confidence 122255532222221111 1223332 34678888999999988653
No 97
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=87.40 E-value=3.7 Score=39.91 Aligned_cols=152 Identities=11% Similarity=0.147 Sum_probs=79.3
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecC--------------C------------Ccccccc---CCCCCC----hHHHH
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFND--------------G------------QWRALQT---SPSVYD----EEVFK 96 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~--------------~------------~~~~~~~---~~g~~~----~~~l~ 96 (416)
++-+++++.|+.|+=.|+|..=.++-.+ . .|.+++. -.|... ++..+
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 3668999999999999999875543111 0 0222221 123333 33344
Q ss_pred HHHHHHHHHHHcCCEEEEecCCCcCcCCChh-----hHH--------HhhhhcCCCCCCCcCc--CCCHHHHHHHHHHHH
Q 014902 97 ALDFVISEAKKYKIRLILSLTNNWDAYGGKA-----QYV--------KWGKAAGLNLTSDDEF--FSHTTLKSYYKAHVK 161 (416)
Q Consensus 97 ~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~-----~y~--------~w~~~~G~~~~~~~~~--~~~~~~~~~~~~~v~ 161 (416)
.=.++++.+++.||.+|+.-+. |-.| .|| .|. |. ....+ .++|-..+.-+.|++
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~-----G~VP~~~~~~~P~a~i~~~~~W~---~f---~~~~~L~P~dplF~~i~~~F~~ 164 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFA-----GHVPRAFKRKYPNANITRQGNWN---GF---CRPYFLDPTDPLFAEIAKLFYE 164 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S------EE-TTHHHHSTT--EE---EET---TE---E--EEE-SS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcC-----CCCChHHHhcCCCCEEeeCCCcC---CC---CCCceeCCCCchHHHHHHHHHH
Confidence 4468999999999999997652 2221 111 111 00 00011 235556677778888
Q ss_pred HHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 162 TVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 162 ~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
+..+. |+ ...+.+-+..||-..... ..+.+.+-.+.+.+.+++.||+..-.
T Consensus 165 ~q~~~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWv 215 (333)
T PF05089_consen 165 EQIKL--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWV 215 (333)
T ss_dssp HHHHH--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEE
T ss_pred HHHHh--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 88888 88 557999999999987642 12347777888999999999997644
No 98
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=86.97 E-value=2.6 Score=46.14 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=45.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeec---CCCcccccc-CCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFN---DGQWRALQT-SPSVYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~---~~~~~~~~~-~~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.+-..+.+.|..++++|+++|=+-.+. .+....+.. .....|+ ...+.|..++++|+++||+||+++.
T Consensus 13 ~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 13 FTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 345778999999999999999763321 111111111 0111222 1367889999999999999999986
No 99
>PRK09936 hypothetical protein; Provisional
Probab=86.95 E-value=29 Score=33.13 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.+++.+++-+..++..|++++=+ .|..+..++ |... =.-|-+.++.|.+.||+|+|-|.
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLiv------QWt~yG~~~--fg~~-~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVV------QWTRYGDAD--FGGQ-RGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE------EeeeccCCC--cccc-hHHHHHHHHHHHHcCCEEEEccc
Confidence 46789999999999999999866 233332221 1111 12456789999999999999997
No 100
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=86.80 E-value=13 Score=41.29 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CCcCcCCCh------hhH-HHhhhh---cCCCCCC---CcC-cCCCHHHHHHHHHH
Q 014902 95 FKALDFVISEAKKYKIRLILSLT-NNWDAYGGK------AQY-VKWGKA---AGLNLTS---DDE-FFSHTTLKSYYKAH 159 (416)
Q Consensus 95 l~~lD~~l~~a~~~Gi~vil~l~-~~w~~~gg~------~~y-~~w~~~---~G~~~~~---~~~-~~~~~~~~~~~~~~ 159 (416)
...|.++|++|+++||+||+++. ||-. .+|. +.+ +.|... .|. ..+ ..+ -..++.+++...+.
T Consensus 403 i~Efk~mV~alH~~Gi~VIlDVVyNHt~-~~g~~~~s~ld~~~P~YY~r~~~~G~-~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 403 IKEFREMVQALNKTGLNVVMDVVYNHTN-ASGPNDRSVLDKIVPGYYHRLNEDGG-VENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeccccc-ccCccCcccccccCcHhhEeeCCCCC-eecCCCCcCCCCCCHHHHHHHHHH
Confidence 56788999999999999999985 3311 1111 111 112111 110 000 001 12357788888888
Q ss_pred HHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEeccccc
Q 014902 160 VKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGLEGF 228 (416)
Q Consensus 160 v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~~g~ 228 (416)
++..++. |+=+- +-++++.... ..+++++.+++|+++|+.. .+| |+|
T Consensus 481 l~~W~~e--------y~VDG--FRfDlm~~~~----------~~f~~~~~~~l~~i~pdi~-l~G-EgW 527 (898)
T TIGR02103 481 LVVWAKD--------YKVDG--FRFDLMGHHP----------KAQMLAAREAIKALTPEIY-FYG-EGW 527 (898)
T ss_pred HHHHHHH--------cCCCE--EEEechhhCC----------HHHHHHHHHHHHHhCCCEE-EEe-cCC
Confidence 8888877 65331 2245554332 3567888888999999854 345 454
No 101
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.62 E-value=2.6 Score=42.61 Aligned_cols=156 Identities=8% Similarity=0.103 Sum_probs=97.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCC--------------------------cccccc---CCCCCChHHH----HH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQ--------------------------WRALQT---SPSVYDEEVF----KA 97 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~--------------------------~~~~~~---~~g~~~~~~l----~~ 97 (416)
.-+++++.++.|+=+|+|.+=.|...+.. |.+... -.|...++.+ -.
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 46899999999999999988665321111 333221 1244444322 12
Q ss_pred HHHHHHHHHHcCCEEEEecCCCcCcCCChhh-----H--------HHhhhhcCCCCCCCcCcC---CCHHHHHHHHHHHH
Q 014902 98 LDFVISEAKKYKIRLILSLTNNWDAYGGKAQ-----Y--------VKWGKAAGLNLTSDDEFF---SHTTLKSYYKAHVK 161 (416)
Q Consensus 98 lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~-----y--------~~w~~~~G~~~~~~~~~~---~~~~~~~~~~~~v~ 161 (416)
-.++|+.+.+.||.+++.-+. |..|. | ++|.. .+....-.++ +||-.++--..|++
T Consensus 156 qkrIidrm~~lGmTpvLPaFa-----G~VP~al~rlfPesnf~rl~rWn~---f~s~~~C~l~v~P~dplF~eIgs~Flr 227 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFA-----GHVPDALERLFPESNFTRLPRWNN---FTSRYSCMLLVSPFDPLFQEIGSTFLR 227 (666)
T ss_pred HHHHHHHHHHcCCCccchhhc-----cccHHHHHHhCchhceeeccccCC---CCcceeeeEEccCCcchHHHHHHHHHH
Confidence 248899999999999987652 32221 1 11210 0100111122 24556777778999
Q ss_pred HHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEe
Q 014902 162 TVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 162 ~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 223 (416)
++++. |+....|.+-+..||...... .++-+..-...++..+|++|++..-..
T Consensus 228 ~~~ke--------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWll 280 (666)
T KOG2233|consen 228 HQIKE--------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLL 280 (666)
T ss_pred HHHHH--------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEee
Confidence 99999 998888999999999987642 234445555667788899999986544
No 102
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=86.43 E-value=2.8 Score=46.10 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=44.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeec---CCCccccccC-CCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFN---DGQWRALQTS-PSVYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~---~~~~~~~~~~-~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+-..+.+.+..++++|+|+|=+-.+. .+....+... ....|+ ...+.|..++++|+++||+||+++.
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45788999999999999999773321 1111111110 111222 1357889999999999999999996
No 103
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=86.39 E-value=1.9 Score=46.65 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCEEEEeeecCCC------------ccccccC-----CCCCCh-HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 58 LFHQASSAGLTVCRTWAFNDGQ------------WRALQTS-----PSVYDE-EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 58 dl~~~~~~G~n~vRi~~~~~~~------------~~~~~~~-----~g~~~~-~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
-|+.+|++|+|+|=+-...+.. +-.+.+. .+.|.. ...+.|.++|++|+++||+||+++.
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4899999999999884422110 0011110 011211 1257899999999999999999985
No 104
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=85.89 E-value=2.9 Score=41.89 Aligned_cols=54 Identities=17% Similarity=0.031 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++++||+.++++|++.+=+-+. .-++-..+.|..++++|++.|.|+++.+.
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------------~~d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------------SSDSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------------cCCcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 5789999999999999998876221 11122257888999999999999999886
No 105
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=85.53 E-value=38 Score=33.32 Aligned_cols=159 Identities=18% Similarity=0.126 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHH--HHHHHHHHHcCCEEEEecCCCcCcC---CC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKAL--DFVISEAKKYKIRLILSLTNNWDAY---GG 125 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~l--D~~l~~a~~~Gi~vil~l~~~w~~~---gg 125 (416)
+.+.+++.++.+++.|+.+==+|. |..|..-. ..-.+|++.+... ..+++.+++.|+++++.++.+-... ..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~~~-~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~ 98 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWN--DIDYMDRR-RDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGS 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CcccccCc-cceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCC
Confidence 568899999999999987554543 33332100 1124566666666 8899999999999998875321110 11
Q ss_pred hhhHHHhhhh-------cCCCC-------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCC
Q 014902 126 KAQYVKWGKA-------AGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 191 (416)
Q Consensus 126 ~~~y~~w~~~-------~G~~~-------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~ 191 (416)
.+.|..-... .|.+. ...--=|+||+++++|.+.++.++.. ++- -.-|.=+|||.
T Consensus 99 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~Gv---dg~w~D~~Ep~ 167 (339)
T cd06602 99 YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ--------VPF---DGLWIDMNEPS 167 (339)
T ss_pred CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc--------CCC---cEEEecCCCCc
Confidence 1222211110 01110 01112378999999999999887765 332 23377799997
Q ss_pred CCCCCChhHHHHHHHHHHHHhhhcCCCcEEEe
Q 014902 192 CTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 192 ~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 223 (416)
.......--...+.+.+...+++....++++.
T Consensus 168 ~~~~~hN~y~~~~~~~~~~~~~~~~~~r~~~~ 199 (339)
T cd06602 168 NFYDVHNLYGLSEAIATYKALQSIPGKRPFVI 199 (339)
T ss_pred hHhhhcchhhHHHHHHHHHHHHhcCCCCCEEE
Confidence 43100000112344555667776633344444
No 106
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=84.33 E-value=2.7 Score=43.26 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCC--CccccccCC-CCCC--hHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDG--QWRALQTSP-SVYD--EEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~--~~~~~~~~~-g~~~--~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++-.-+.+-|+.++++|+++|=+-.+-.. .+..+...+ ...+ -..++.++.++++|+++||+||+++.
T Consensus 26 Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 26 GDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred ccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34556678999999999999966332211 111111111 0111 12367889999999999999999994
No 107
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=83.73 E-value=2.6 Score=45.33 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=40.9
Q ss_pred HHHHHHcCCCEEEEeee---cCC----------Cc--cc---cccCCCCC-----ChHHHHHHHHHHHHHHHcCCEEEEe
Q 014902 59 FHQASSAGLTVCRTWAF---NDG----------QW--RA---LQTSPSVY-----DEEVFKALDFVISEAKKYKIRLILS 115 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~---~~~----------~~--~~---~~~~~g~~-----~~~~l~~lD~~l~~a~~~Gi~vil~ 115 (416)
|+.+|++|+++|.+..+ .+. -| .+ +-|+ +.| .......|..+|.+++++||.||++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999442 111 02 11 2222 222 2246788999999999999999999
Q ss_pred cC
Q 014902 116 LT 117 (416)
Q Consensus 116 l~ 117 (416)
+.
T Consensus 285 VV 286 (697)
T COG1523 285 VV 286 (697)
T ss_pred Ee
Confidence 85
No 108
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=83.51 E-value=3.8 Score=48.28 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=45.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecC---CCcccccc-CCCCCChH--HHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFND---GQWRALQT-SPSVYDEE--VFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~---~~~~~~~~-~~g~~~~~--~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
+-..+.+-|..++++|+|+|=+-.+.. +....+.. .....|++ ..+.|++++++|+++||+||+++.-
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 456789999999999999996632211 11111100 01122222 3678899999999999999999963
No 109
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.81 E-value=2.6 Score=48.54 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCEEEEeeecCC-C--------------ccc---cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 57 ELFHQASSAGLTVCRTWAFNDG-Q--------------WRA---LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 57 ~dl~~~~~~G~n~vRi~~~~~~-~--------------~~~---~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.|+.+|++|+|+|=+-...+. . +.. +.+. ..|.....+.+.++|++|+++||+|||++.
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPD-PRLAPGGEEEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcC-hhhccCcHHHHHHHHHHHHHCCCEEEEEEc
Confidence 5688999999999988432110 0 100 0111 112212467899999999999999999985
No 110
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=82.01 E-value=16 Score=35.45 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=42.0
Q ss_pred CCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 49 QSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 49 ~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
|++.+.-.+.|+.+++.|+|+. +++--+..+++- .=...|.++-++.|..+++.|++.|+..+..|+.
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~Y-iYAPKdDpyhr~-~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisP 78 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNTY-IYAPKDDPYHRS-KWREPYPEEELAELKELADAAKANGVDFVYAISP 78 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--EE-EE--TT-TTTTT-TTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBG
T ss_pred CCCHHHHHHHHHHHHHcCCceE-EECCCCChHHHh-hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECc
Confidence 5667788889999999999976 322112211110 0013578899999999999999999999999983
No 111
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=80.88 E-value=7.4 Score=38.30 Aligned_cols=94 Identities=15% Similarity=0.252 Sum_probs=62.9
Q ss_pred HHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCC-HHHHHHHHHHHHHHHhcccccccccccCCC
Q 014902 101 VISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSH-TTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 179 (416)
Q Consensus 101 ~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~-~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p 179 (416)
.++.|+|+|++|+-+++..|. ++. .|.. .+..+ ++....+.+-+-.+++. |+=+
T Consensus 51 ~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfD- 105 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFD- 105 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCC-
Confidence 478999999999999886654 222 2322 13444 66677777777788887 6544
Q ss_pred cEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 180 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 180 ~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
+|.|==|-........+.+.++++++.+.+++..|...|.
T Consensus 106 ---Gw~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 106 ---GWLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred ---ceEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 3444333333111224678999999999999998887775
No 112
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=80.83 E-value=5.3 Score=38.71 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCc-CcCCChhhHH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNW-DAYGGKAQYV 130 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w-~~~gg~~~y~ 130 (416)
.+.-.+.|+.|...|+. |||.- .+.++ ...+..+..+++++.+|.+.|+++|++....- ...|=...+.
T Consensus 15 ~~~~~~Yi~~~~~~Gf~--~IFts------l~~~~--~~~~~~~~~~~ell~~Anklg~~vivDvnPsil~~l~~S~~~l 84 (360)
T COG3589 15 KEKDIAYIDRMHKYGFK--RIFTS------LLIPE--EDAELYFHRFKELLKEANKLGLRVIVDVNPSILKELNISLDNL 84 (360)
T ss_pred chhHHHHHHHHHHcCcc--ceeee------cccCC--chHHHHHHHHHHHHHHHHhcCcEEEEEcCHHHHhhcCCChHHH
Confidence 45667889999999999 55431 11222 23456899999999999999999999996310 0000000111
Q ss_pred HhhhhcCCCCCCCcCcCCCHHHHHHH-------------HHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCC
Q 014902 131 KWGKAAGLNLTSDDEFFSHTTLKSYY-------------KAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPS 197 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~~~~~~~~-------------~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~ 197 (416)
.-.+.-|...-+-+..|+..+..+.- .+++..++.+ -.|-..|.+|-=. -|+..+
T Consensus 85 ~~f~e~G~~glRlD~gfS~eei~~ms~~~lkieLN~S~it~~l~~l~~~--------~an~~nl~~cHNy-YPr~yT--- 152 (360)
T COG3589 85 SRFQELGVDGLRLDYGFSGEEIAEMSKNPLKIELNASTITELLDSLLAY--------KANLENLEGCHNY-YPRPYT--- 152 (360)
T ss_pred HHHHHhhhhheeecccCCHHHHHHHhcCCeEEEEchhhhHHHHHHHHHh--------ccchhhhhhcccc-cCCccc---
Confidence 11111121111122233333322221 2356666665 2332334433200 122221
Q ss_pred hhHHHHHHHHHHHHhhhcCCCcEEEecc
Q 014902 198 GDTLQSWIQEMAVYVKSIDAKHLVEIGL 225 (416)
Q Consensus 198 ~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 225 (416)
.--.+|+.++.+.+|..++.....+.+
T Consensus 153 -GLS~e~f~~kn~~fk~~~i~t~AFis~ 179 (360)
T COG3589 153 -GLSREHFKRKNEIFKEYNIKTAAFISS 179 (360)
T ss_pred -CccHHHHHHHHHHHHhcCCceEEEEec
Confidence 224578899999999999887665544
No 113
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=80.55 E-value=39 Score=31.52 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 014902 96 KALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 175 (416)
Q Consensus 96 ~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y 175 (416)
..++.++..|+++|++|++.+.. |.. +. + .....+++.++.|.+-+-.++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~~-~~---~--------------~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GSP-PE---F--------------TAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CCC-Cc---c--------------hhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 45678899999999999999863 221 00 0 01345788888887777777777 5
Q ss_pred cCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEec
Q 014902 176 KNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 176 ~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 224 (416)
.=+---+-||-.... .+.+..+++++.+.+++. +.++++.
T Consensus 99 ~~DGIdiDwE~~~~~-------~~~~~~fv~~Lr~~l~~~--~~~lt~a 138 (253)
T cd06545 99 NLDGIDVDLEGPDVT-------FGDYLVFIRALYAALKKE--GKLLTAA 138 (253)
T ss_pred CCCceeEEeeccCcc-------HhHHHHHHHHHHHHHhhc--CcEEEEE
Confidence 544444556542211 356778888888888754 3455554
No 114
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=80.40 E-value=5.8 Score=45.05 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecC----C------------------Cccc-----cccCCCCCCh------HHHHHHH
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFND----G------------------QWRA-----LQTSPSVYDE------EVFKALD 99 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~----~------------------~~~~-----~~~~~g~~~~------~~l~~lD 99 (416)
.-+.+.|+.+++||+|+|=+....+ . .|.. +.++ +.|.. ...+.|.
T Consensus 480 ~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape-~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 480 AAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS-GMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc-cccccCCcCccccHHHHH
Confidence 4455679999999999998844321 0 0210 1111 12211 1257899
Q ss_pred HHHHHHHHcCCEEEEecC-CCcCc---CCC-hhhHHHhhhhcCCCCCC--CcC-cCCCHHHHHHHHHHHHHHHhcccccc
Q 014902 100 FVISEAKKYKIRLILSLT-NNWDA---YGG-KAQYVKWGKAAGLNLTS--DDE-FFSHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 100 ~~l~~a~~~Gi~vil~l~-~~w~~---~gg-~~~y~~w~~~~G~~~~~--~~~-~~~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
++|++|+++||+||+++. ||-.. +-+ .+.|-.+....|.+... ... -.+++.+++...+.++..++.
T Consensus 559 ~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e----- 633 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE----- 633 (1111)
T ss_pred HHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh-----
Confidence 999999999999999985 33110 000 00110000001110000 011 124577888888888888887
Q ss_pred cccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEE
Q 014902 172 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 221 (416)
Q Consensus 172 g~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 221 (416)
|+=+- +-++++.... ..++..+...+++++|+..+
T Consensus 634 ---y~VDG--FRfDl~g~~d----------~~~~~~~~~~l~~~dP~~~l 668 (1111)
T TIGR02102 634 ---FKVDG--FRFDMMGDHD----------AASIEIAYKEAKAINPNIIM 668 (1111)
T ss_pred ---cCCcE--EEEeccccCC----------HHHHHHHHHHHHHhCcCEEE
Confidence 54321 2245553211 13445566667788886543
No 115
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=80.21 E-value=3.8 Score=38.68 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++.++.++.+|+++|+++....+ + .......-+...+.|+.+.+.|+++||++.+-.+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 46778899999999999999653211 1 1111111245567899999999999999987654
No 116
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.16 E-value=27 Score=30.79 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCcccc--ccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRAL--QTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~--~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
...++..+.+++.|+..+-++.......... ...... .+..++.+.+.++.|++.|.+.++.....+.. ..
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~-~~----- 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPS-GP----- 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESS-ST-----
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCccccc-cc-----
Confidence 4677888889999999777755332211100 001112 46678999999999999999987654321000 00
Q ss_pred HhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHH
Q 014902 131 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAV 210 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~ 210 (416)
-....+..+.+.+.++.+++. .+.+.-.++.|....+.+....+ ++++..
T Consensus 100 ---------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE~~~~~~~~~~~~-------~~~~~~ 149 (213)
T PF01261_consen 100 ---------------EDDTEENWERLAENLRELAEI--------AEEYGVRIALENHPGPFSETPFS-------VEEIYR 149 (213)
T ss_dssp ---------------TSSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE-SSSSSSSEESS-------HHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEecccCccccchhh-------HHHHHH
Confidence 012234566667777777776 44444455555444443322111 467777
Q ss_pred HhhhcCCCc
Q 014902 211 YVKSIDAKH 219 (416)
Q Consensus 211 ~Ir~~dp~~ 219 (416)
.++++++..
T Consensus 150 ~l~~~~~~~ 158 (213)
T PF01261_consen 150 LLEEVDSPN 158 (213)
T ss_dssp HHHHHTTTT
T ss_pred HHhhcCCCc
Confidence 788777544
No 117
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=79.98 E-value=24 Score=33.47 Aligned_cols=85 Identities=15% Similarity=0.274 Sum_probs=57.2
Q ss_pred EEEeCCeEEE-CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHH
Q 014902 18 VQKQGNQFVV-NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK 96 (416)
Q Consensus 18 v~~~g~~f~~-~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~ 96 (416)
|.+.+ +.+ +|+.+.+.|-+.. .+++.+.+.-+.+|++|+.++|...+-. + .+|..|..-.-+
T Consensus 16 ~~~~~--~~~g~~~~~~iaGPCsi---------e~~~~~~~~A~~lk~~g~~~~r~~~~kp----R--Ts~~s~~G~g~~ 78 (266)
T PRK13398 16 VKVGD--VVIGGEEKIIIAGPCAV---------ESEEQMVKVAEKLKELGVHMLRGGAFKP----R--TSPYSFQGLGEE 78 (266)
T ss_pred EEECC--EEEcCCCEEEEEeCCcC---------CCHHHHHHHHHHHHHcCCCEEEEeeecC----C--CCCCccCCcHHH
Confidence 55533 444 4555677888752 3567888889999999999999965531 1 123333322345
Q ss_pred HHHHHHHHHHHcCCEEEEecCCC
Q 014902 97 ALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 97 ~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
.|..+-+.+++.||.++-++++.
T Consensus 79 gl~~l~~~~~~~Gl~~~te~~d~ 101 (266)
T PRK13398 79 GLKILKEVGDKYNLPVVTEVMDT 101 (266)
T ss_pred HHHHHHHHHHHcCCCEEEeeCCh
Confidence 66667777899999999998753
No 118
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=79.76 E-value=60 Score=31.26 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=87.1
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 128 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 128 (416)
.+.+.+.+.++.+++.|+.+==+|. |..|..-.. ..-.+|++.|-....++++++++|+++++-++.+=. ...+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l--D~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~--~~~~~ 96 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHL--DCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIA--QKSPL 96 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEE--ecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCC--CCchh
Confidence 3567899999999999977543332 333421100 123456667777889999999999999987753210 01112
Q ss_pred HHHhhhhcC--------CCC-------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeE-EEeccCCCC
Q 014902 129 YVKWGKAAG--------LNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFA-WELMNEPRC 192 (416)
Q Consensus 129 y~~w~~~~G--------~~~-------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~-wel~NEp~~ 192 (416)
|..-. ..| .+. ...--=|++|++++.+.+.++.+..- + |-+ |.=+||+-.
T Consensus 97 ~~e~~-~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~---------G----id~~~~D~~e~~p 162 (308)
T cd06593 97 FKEAA-EKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDM---------G----VDCFKTDFGERIP 162 (308)
T ss_pred HHHHH-HCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHh---------C----CcEEecCCCCCCC
Confidence 22110 011 000 00011267899999999988876652 1 112 333677643
Q ss_pred CCCC--C---hh-----HHHHHHHHHHHHhhhcCCC-cEEEec
Q 014902 193 TSDP--S---GD-----TLQSWIQEMAVYVKSIDAK-HLVEIG 224 (416)
Q Consensus 193 ~~~~--~---~~-----~~~~w~~~~~~~Ir~~dp~-~lV~~g 224 (416)
.... . +. ....+.+.+.+.+++..++ +++++.
T Consensus 163 ~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~ 205 (308)
T cd06593 163 TDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWA 205 (308)
T ss_pred ccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 2210 1 11 1234556677788888776 355443
No 119
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=77.22 E-value=6.6 Score=36.57 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
+.+++.++.++.+|.+.||++.... .-....-...+...+.|.++.+.|++.||++.+-.++.
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~ 146 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR----PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS 146 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 5667889999999999999854210 00000001123445778899999999999999887654
No 120
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.11 E-value=30 Score=33.39 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
.+.+.+.+.++.+++.|+..=-++. |..|..-. ..-.+|++.|..+..+++..++.|+++++-+...-. -..+.|
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~i--D~~w~~~~-g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~--~~s~~~ 101 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEI--DDNWETCY-GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFIN--TDSENF 101 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEe--CCCccccC-CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeC--CCCHHH
Confidence 4678899999999999976433332 33342211 122466777777889999999999999998763211 011122
Q ss_pred HH------hhhh-cC-CCCC-----CCc--CcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCC
Q 014902 130 VK------WGKA-AG-LNLT-----SDD--EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 191 (416)
Q Consensus 130 ~~------w~~~-~G-~~~~-----~~~--~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~ 191 (416)
.. |.+. .| .+.. ... -=++||++++.+.+.++.++.. ++= .. -|.=+|||.
T Consensus 102 ~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gv-dg--~w~D~~E~~ 167 (303)
T cd06592 102 REAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK--------YGI-DS--FKFDAGEAS 167 (303)
T ss_pred HhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHH--------hCC-cE--EEeCCCCcc
Confidence 21 0000 01 1100 001 1277999999999999988865 322 11 245589986
No 121
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=76.99 E-value=21 Score=34.99 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=52.9
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+++.+++.|-.. ..+++.+.+.-+.+|++|.+++|...|-. ..+|..|..-..+.|..+.+.+++
T Consensus 91 ~~~~~~IAGPCs---------iEs~e~~~~~A~~lk~~ga~~~r~~~fKp------RTsp~sf~G~g~~gL~~L~~~~~~ 155 (335)
T PRK08673 91 GGKPVVIAGPCS---------VESEEQILEIARAVKEAGAQILRGGAFKP------RTSPYSFQGLGEEGLKLLAEAREE 155 (335)
T ss_pred CCceEEEEecCc---------cCCHHHHHHHHHHHHHhchhhccCcEecC------CCCCcccccccHHHHHHHHHHHHH
Confidence 456667777443 23567788888899999999999877631 112333333335666777788999
Q ss_pred cCCEEEEecCC
Q 014902 108 YKIRLILSLTN 118 (416)
Q Consensus 108 ~Gi~vil~l~~ 118 (416)
.||.++-++++
T Consensus 156 ~Gl~v~tev~d 166 (335)
T PRK08673 156 TGLPIVTEVMD 166 (335)
T ss_pred cCCcEEEeeCC
Confidence 99999998875
No 122
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=76.49 E-value=41 Score=31.11 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhccccc
Q 014902 91 DEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTF 170 (416)
Q Consensus 91 ~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~ 170 (416)
.+.+++-+.+.+..|++.||++|= | .|.+.|-. -.|++.++.|.+=++..+.-
T Consensus 91 r~~aleiM~KaI~LA~dLGIRtIQ-L-------AGYDVYYE---------------~~d~eT~~rFi~g~~~a~~l---- 143 (287)
T COG3623 91 RQQALEIMEKAIQLAQDLGIRTIQ-L-------AGYDVYYE---------------EADEETRQRFIEGLKWAVEL---- 143 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCceeEe-e-------ccceeeec---------------cCCHHHHHHHHHHHHHHHHH----
Confidence 357788899999999999999872 1 33333311 02677788887655554442
Q ss_pred ccccccCC-CcEeEEEeccCCCC
Q 014902 171 TNLTYKND-PTIFAWELMNEPRC 192 (416)
Q Consensus 171 tg~~y~~~-p~I~~wel~NEp~~ 192 (416)
+.. .-.++.|++--|-.
T Consensus 144 -----A~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 144 -----AARAQVMLAVEIMDTPFM 161 (287)
T ss_pred -----HHhhccEEEeeecccHHH
Confidence 222 24667888877765
No 123
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=76.34 E-value=86 Score=31.24 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe--ccCCCCCCCC---------ChhHHHHHHHH-HHHHhhhcCC-
Q 014902 151 TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL--MNEPRCTSDP---------SGDTLQSWIQE-MAVYVKSIDA- 217 (416)
Q Consensus 151 ~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel--~NEp~~~~~~---------~~~~~~~w~~~-~~~~Ir~~dp- 217 (416)
.+-+.|.+|+-++++. |..+ .|--|.| .|||....+. ..+..+.++++ +..++++-..
T Consensus 226 ~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~ 296 (518)
T KOG2566|consen 226 IYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTT 296 (518)
T ss_pred hhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcC
Confidence 4567788888888887 8777 4666765 8999987643 13445555543 3344443221
Q ss_pred -CcEEEeccccccCCCCCCCcCCCcCcccccccchhhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHH
Q 014902 218 -KHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIED 296 (416)
Q Consensus 218 -~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~ 296 (416)
+.-|.+=...- ..-|. |+-..=.|- .+...++=+.+|.|-+.-.+. .|+..
T Consensus 297 knvkllilDD~R---------g~LP~-WadtvlnDp---eAakYv~GIaVHwY~df~~pa---------------~~L~e 348 (518)
T KOG2566|consen 297 KNVKLLILDDQR---------GLLPH-WADTVLNDP---EAAKYVHGIAVHWYQDFLEPA---------------KHLDE 348 (518)
T ss_pred CceEEEEecCCc---------cCCCc-cchhhccCh---hhhhhccceEEEeeccccChh---------------hhhhh
Confidence 22222111100 01132 421111121 245677888999997631111 12222
Q ss_pred HHH-hCCCcEEEEecCCccCC---CCC-ChhHHHHHHHHHHHHHHHhhhcCCccccccccccCCC--CCCCCCCCce
Q 014902 297 AEK-YLRMPVLFTEFGVSAKD---TGY-NTSFRDTLISSVYKTLLNSTKKGGSGAGSLLWQLFPD--GTDYMNDGYA 366 (416)
Q Consensus 297 a~~-~~~kPv~i~EfG~~~~~---~g~-~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~--g~~~~~dg~~ 366 (416)
.++ ..++=++=+|-...... ... +=+...+|-..+++.+. .-+.||.=|.+.-+ |-++|-.+|-
T Consensus 349 Th~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dln------n~vtGWtdwNl~Ld~~GGP~wv~nfv 419 (518)
T KOG2566|consen 349 THRKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLN------NHVTGWTDWNLILDAQGGPNWVSNFV 419 (518)
T ss_pred HHhhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhh------hhccceeeeeeEecCcCCchhHhccC
Confidence 332 13444566665433221 111 11223344444444332 23788999998643 5477766664
No 124
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=76.06 E-value=46 Score=32.39 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 148 SHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 148 ~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
.+++.++.+.++++.++++ -|.|.-+ .++-+|+..+|.........+.+.++++++++.+|+..|+.+|.
T Consensus 141 ~~~~W~~il~~rl~~l~~k--GfDGvfL---D~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II 210 (315)
T TIGR01370 141 WDPEWKAIAFSYLDRVIAQ--GFDGVYL---DLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII 210 (315)
T ss_pred ccHHHHHHHHHHHHHHHHc--CCCeEee---ccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 3577777788888877765 2222211 25667777776553222223567889999999999999997664
No 125
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.83 E-value=7 Score=36.96 Aligned_cols=61 Identities=8% Similarity=0.218 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++.++.++.+|++.||+..+.. + ..+.+...-+...+.|+.+++.|+++||++.+-.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 5578889999999999999853210 0 01111111134557899999999999999987665
No 126
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=75.40 E-value=75 Score=30.84 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
+.+.+.+.++.+++.++.+==+|. |..|..- ...-.+|++.+.....+++.+++.|+++++.++.+-......+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~-~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~ 98 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFL--DIHYMDS-YRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFL 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEE--ChhhhCC-CCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHH
Confidence 567899999999999988665553 2233110 0122467777777788999999999999987753311000011111
Q ss_pred Hhhh-------hcCCCC-----C--CCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCC
Q 014902 131 KWGK-------AAGLNL-----T--SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDP 196 (416)
Q Consensus 131 ~w~~-------~~G~~~-----~--~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~ 196 (416)
.=.. ..|.+. + ..--=|+||+++++|.+.++.++.. ++- -.-|.=+|||......
T Consensus 99 ~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~gv---dg~w~D~~Ep~~~~~~ 167 (317)
T cd06600 99 SGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------QGV---DGIWLDMNEPSDFEKV 167 (317)
T ss_pred HHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------CCC---ceEEeeCCCCccHHHh
Confidence 1000 001100 0 1112367999999999999887654 222 2246679999643110
Q ss_pred ChhHHHHHHHHHHHHhhhcCC-CcEEEe
Q 014902 197 SGDTLQSWIQEMAVYVKSIDA-KHLVEI 223 (416)
Q Consensus 197 ~~~~~~~w~~~~~~~Ir~~dp-~~lV~~ 223 (416)
..--...+.+.....+++..| .+++++
T Consensus 168 hn~y~~~~~~a~~~~~~~~~~~~r~~~~ 195 (317)
T cd06600 168 HNLYGLYEAMATAEGFRTSHPRNRIFIL 195 (317)
T ss_pred cchhhHHHHHHHHHHHHHhcCCCCceEE
Confidence 000112344555666776654 334443
No 127
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=75.20 E-value=6.8 Score=38.79 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
+.+...+.|+.|+++|++ |+|.- ...|+ .-.+..++.+..+++.|+++||+|++++..
T Consensus 12 ~~~~~~~yi~~a~~~Gf~--~iFTS------L~ipe--~~~~~~~~~~~~l~~~a~~~~~~v~~Disp 69 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFK--RIFTS------LHIPE--DDPEDYLERLKELLKLAKELGMEVIADISP 69 (357)
T ss_dssp -HHHHHHHHHHHHCTTEE--EEEEE------E-----------HHHHHHHHHHHHHHCT-EEEEEE-C
T ss_pred CHHHHHHHHHHHHHCCCC--EEECC------CCcCC--CCHHHHHHHHHHHHHHHHHCCCEEEEECCH
Confidence 357888999999999999 55431 01122 123567899999999999999999999963
No 128
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=74.39 E-value=28 Score=34.52 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCC
Q 014902 100 FVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 179 (416)
Q Consensus 100 ~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p 179 (416)
.++..|+++|++|++.-. .+. ....+++.++.|.+-+-.++++ |.=+-
T Consensus 68 ~~~~~A~~~~v~v~~~~~--------~~~----------------~~l~~~~~R~~fi~siv~~~~~--------~gfDG 115 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGD--------VPL----------------EQISNPTYRTQWIQQKVELAKS--------QFMDG 115 (358)
T ss_pred HHHHHHHHcCCEEEEECc--------cCH----------------HHcCCHHHHHHHHHHHHHHHHH--------hCCCe
Confidence 668899999999986521 110 1245788888888777778877 54443
Q ss_pred cEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEecc
Q 014902 180 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 225 (416)
Q Consensus 180 ~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 225 (416)
--+-||--+... ....+.+..+++++.+.+++..+.-+|++..
T Consensus 116 IdIDwE~p~~~~---~~d~~~~t~llkelr~~l~~~~~~~~Lsvav 158 (358)
T cd02875 116 INIDIEQPITKG---SPEYYALTELVKETTKAFKKENPGYQISFDV 158 (358)
T ss_pred EEEcccCCCCCC---cchHHHHHHHHHHHHHHHhhcCCCcEEEEEE
Confidence 344466433211 1124678899999999999877777777643
No 129
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=73.74 E-value=7.1 Score=34.66 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCC-CCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP-SVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~-g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
.+.+++.++.++.+|+..++++... +....... ...-+...+.|+++++.|+++|+++.+-.+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 4678899999999999999997431 00000000 0111355678999999999999998887663
No 130
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=73.73 E-value=11 Score=35.76 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++.++.++.+|++.|+++... .. ........-+...+.|.++.+.|+++||++.+-.+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 457889999999999999984311 00 00000011134567888999999999999988755
No 131
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.73 E-value=27 Score=33.47 Aligned_cols=130 Identities=13% Similarity=0.188 Sum_probs=75.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccc-----c---CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCc
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQ-----T---SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDA 122 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~-----~---~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~ 122 (416)
+.+.+++.++.+++.|+.+==||. |..|..-. . ..-.+|++.+.....+++..++.|+++++-++..-..
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~ 100 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGI 100 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCccc
Confidence 568899999999999987544433 33332210 0 1124677777788899999999999999887643100
Q ss_pred CCChhhHHHhhhhcCCCCCCC---cCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC
Q 014902 123 YGGKAQYVKWGKAAGLNLTSD---DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 193 (416)
Q Consensus 123 ~gg~~~y~~w~~~~G~~~~~~---~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~ 193 (416)
-.....|.......+...... .--+++|++++.|.+.+...+.. ++ .-..|.=+|||...
T Consensus 101 ~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~--------~G---idg~W~D~~E~~~~ 163 (292)
T cd06595 101 RAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK--------QG---VDFWWLDWQQGNRT 163 (292)
T ss_pred CCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh--------cC---CcEEEecCCCCccc
Confidence 012234554433333321111 11357899888765555443333 22 22346678998754
No 132
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=73.73 E-value=26 Score=34.83 Aligned_cols=76 Identities=20% Similarity=0.295 Sum_probs=54.3
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+|+++++.|-..- .+.+.+.+.-+.+++.|++.+|--.|. + ..+|+.|..-.++.+..+-+.|++
T Consensus 116 ~~~~~~iaGpc~i---------E~~~~~~~~A~~lk~~g~~~~r~~~~k----p--Rtsp~~f~g~~~e~l~~L~~~~~~ 180 (360)
T PRK12595 116 DGNQSFIFGPCSV---------ESYEQVEAVAKALKAKGLKLLRGGAFK----P--RTSPYDFQGLGVEGLKILKQVADE 180 (360)
T ss_pred CCCeeeEEecccc---------cCHHHHHHHHHHHHHcCCcEEEccccC----C--CCCCccccCCCHHHHHHHHHHHHH
Confidence 5677777776531 245777888888999999999963332 1 123444544446777888889999
Q ss_pred cCCEEEEecCC
Q 014902 108 YKIRLILSLTN 118 (416)
Q Consensus 108 ~Gi~vil~l~~ 118 (416)
.||.++-++++
T Consensus 181 ~Gl~~~t~v~d 191 (360)
T PRK12595 181 YGLAVISEIVN 191 (360)
T ss_pred cCCCEEEeeCC
Confidence 99999998875
No 133
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=73.68 E-value=15 Score=37.62 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccc-------cc----------------------------cCCCCCChHHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRA-------LQ----------------------------TSPSVYDEEVF 95 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~-------~~----------------------------~~~g~~~~~~l 95 (416)
+.+.+++.|+.|+..++|++-++.-.+..|+. +. ...|.|. -
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---R 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---H
Confidence 46889999999999999999886654444421 10 0012344 3
Q ss_pred HHHHHHHHHHHHcCCEEEEecC
Q 014902 96 KALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 96 ~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+..+++.|+++||.||..+.
T Consensus 97 ~di~eiv~yA~~rgI~VIPEID 118 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEID 118 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEccC
Confidence 5677899999999999998875
No 134
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=73.21 E-value=11 Score=35.56 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.+.+++.++.++++|++.++++..... . ......-+...+.+.++++.|+++||++.|..+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~---~--~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYL---G--QSKEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC---C--CCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 356788999999999999998643210 0 000011134568889999999999999887665
No 135
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=72.96 E-value=1.1e+02 Score=33.10 Aligned_cols=166 Identities=9% Similarity=0.144 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCC----ccc-cccC---CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-cCc
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQ----WRA-LQTS---PSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-WDA 122 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~----~~~-~~~~---~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~-w~~ 122 (416)
.+.+...|+.++++|+|+|=+=+|++.. ++. +.|. |+. ...|..+-. ..+.++|++|..=+... +..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw--~l~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAW--QLRTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHH--HHHHhhCCEEEEeccceeecc
Confidence 4578889999999999999887776432 211 1111 221 122323222 33889999985322100 110
Q ss_pred CCChhhHHHhhhhcCCCCCCCcCc-----CCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE------------
Q 014902 123 YGGKAQYVKWGKAAGLNLTSDDEF-----FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE------------ 185 (416)
Q Consensus 123 ~gg~~~y~~w~~~~G~~~~~~~~~-----~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~we------------ 185 (416)
-...+.-..+. ..+.+...+.++ .-+|++++..++..+.++.+ .++.|+.|.|+..+--+|
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~ 486 (671)
T PRK14582 409 DPTLPRVKRLD-TGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLSDYEDASAPAITAYQQ 486 (671)
T ss_pred CCCcchhhhcc-ccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEecccccccccccCCHHHHHHHHH
Confidence 00000000010 001111111111 12689999999999999986 478899998886544332
Q ss_pred --eccCCCCCCCCChhHHH-----------HHHHHHHHHhhhcCCCcEEEec
Q 014902 186 --LMNEPRCTSDPSGDTLQ-----------SWIQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 186 --l~NEp~~~~~~~~~~~~-----------~w~~~~~~~Ir~~dp~~lV~~g 224 (416)
|...+.... .+.+.+. .+..++++.+|...|..+.+..
T Consensus 487 ~g~~~~~~~~~-~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~~~~~~~tar 537 (671)
T PRK14582 487 AGFSGSLSEIR-QNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPQVKTAR 537 (671)
T ss_pred cCCCcchhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceeec
Confidence 222211111 1123333 4456778888888765666654
No 136
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=72.85 E-value=9.3 Score=40.57 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEEeeec-CC-Ccc-ccccC-CCCC-------Ch--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFN-DG-QWR-ALQTS-PSVY-------DE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~-~~-~~~-~~~~~-~g~~-------~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+...+.++++|++.|=+-.+- .+ -|. .+-|. .+.| ++ --++.++++++.|+++||+||++|.
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 456788999999998663221 11 110 00011 1222 22 2367889999999999999999996
No 137
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=72.28 E-value=9.9 Score=35.99 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++.++.++.+|++.|++..+. + .........-+...+.|+.+++.|+++||++.+-.+
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~---~-~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYD---V-YYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcc---c-cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 457888999999999999984321 0 000000001123457889999999999999887765
No 138
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.17 E-value=19 Score=33.81 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
+++.+.+.-+.++++|++.+|=-.|. + ..+|+.|..-+++.|..+.+.+++.||.++-++++
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~k----p--Rts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYK----P--RTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccC----C--CCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 56778888888999999999984442 1 23456666556788899999999999999998875
No 139
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=70.66 E-value=89 Score=29.03 Aligned_cols=100 Identities=16% Similarity=0.221 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 014902 95 FKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 174 (416)
Q Consensus 95 l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~ 174 (416)
++.....+..+++.|+||++++.. |.... +. ....+++.++.|.+-+..++++
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg-~~~~~------------~~------~~~~~~~~~~~fa~~l~~~v~~-------- 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILG-NHLGA------------GF------ANNLSDAAAKAYAKAIVDTVDK-------- 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECC-CCCCC------------Cc------cccCCHHHHHHHHHHHHHHHHH--------
Confidence 466677888899999999999863 22100 00 0124566677887777788877
Q ss_pred ccCCCcEeEEEeccCCCCCC-CCChhHHHHHHHHHHHHhhhcCC-CcEEEec
Q 014902 175 YKNDPTIFAWELMNEPRCTS-DPSGDTLQSWIQEMAVYVKSIDA-KHLVEIG 224 (416)
Q Consensus 175 y~~~p~I~~wel~NEp~~~~-~~~~~~~~~w~~~~~~~Ir~~dp-~~lV~~g 224 (416)
|+=+---+-||-.+...... ....+.+..+++++.+.+ +| +.++++.
T Consensus 103 yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~---~~~~kllt~~ 151 (255)
T cd06542 103 YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM---GPTDKLLTID 151 (255)
T ss_pred hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh---CcCCcEEEEE
Confidence 65454445566554321110 112244555555555444 44 5666654
No 140
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=70.33 E-value=1.4e+02 Score=33.88 Aligned_cols=127 Identities=18% Similarity=0.243 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
+.+++.+.++.+++.|+.+==+|. |..|-. .-..-.+|++.|.....+++..++.|+++++.++..-..-.+...|.
T Consensus 199 sq~eV~eva~~fre~~IP~DvIwl--DidYm~-g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~ 275 (978)
T PLN02763 199 SAKRVAEIARTFREKKIPCDVVWM--DIDYMD-GFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYD 275 (978)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE--ehhhhc-CCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHH
Confidence 467889999999999987655554 222210 00112456666666778999999999998876542111001111221
Q ss_pred H------hhhh-cCCCC-----CCCc--CcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCC
Q 014902 131 K------WGKA-AGLNL-----TSDD--EFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 192 (416)
Q Consensus 131 ~------w~~~-~G~~~-----~~~~--~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~ 192 (416)
. |.+. .|.+. +... -=|+||+++++|.+.++.++.. += =.-|.=+|||..
T Consensus 276 eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~---------GV---DG~W~DmnEPa~ 339 (978)
T PLN02763 276 SGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSN---------GV---DGIWNDMNEPAV 339 (978)
T ss_pred hHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcC---------CC---cEEEccCCCCcc
Confidence 1 0000 11110 0011 1267899999998888876542 11 124677899865
No 141
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=69.77 E-value=26 Score=32.21 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=52.4
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+|+.+-+.|.=.-..-. +..+.+...++.+++.|++-|.+++|.||. .+-...++..|.++.+.+.+
T Consensus 26 ~~~~lHl~GLlSdGGVH-----Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGR--------Dt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 26 NGGRLHLMGLLSDGGVH-----SHIDHLFALIKLAKKQGVKKVYVHAFTDGR--------DTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp TT--EEEEEEESS-SSS-------HHHHHHHHHHHHHTT-SEEEEEEEE-SS--------SS-TTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecCCCcc-----ccHHHHHHHHHHHHHcCCCEEEEEEecCCC--------CCCcchHHHHHHHHHHHHHh
Confidence 56677788875321100 134678899999999999999999998773 12234578999999999999
Q ss_pred cCCEEEEecC
Q 014902 108 YKIRLILSLT 117 (416)
Q Consensus 108 ~Gi~vil~l~ 117 (416)
.|+-.|.++.
T Consensus 93 ~~~g~IAsv~ 102 (223)
T PF06415_consen 93 IGIGRIASVS 102 (223)
T ss_dssp HTCTEEEEEE
T ss_pred hCCceEEEEe
Confidence 9886677764
No 142
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=69.35 E-value=23 Score=35.32 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=45.0
Q ss_pred EEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014902 33 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 112 (416)
Q Consensus 33 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 112 (416)
.++|.|+- .+.+ -..+.++.-++...+.|++++|+|-.-+ | .+.|...+..++++|..+
T Consensus 83 LlRGQNlv--GYrh---yaDDvVe~Fv~ka~~nGidvfRiFDAlN-------------D---~RNl~~ai~a~kk~G~h~ 141 (472)
T COG5016 83 LLRGQNLV--GYRH---YADDVVEKFVEKAAENGIDVFRIFDALN-------------D---VRNLKTAIKAAKKHGAHV 141 (472)
T ss_pred HHccCccc--cccC---CchHHHHHHHHHHHhcCCcEEEechhcc-------------c---hhHHHHHHHHHHhcCcee
Confidence 36777752 1111 1246788999999999999999963110 1 356678899999999998
Q ss_pred EEecC
Q 014902 113 ILSLT 117 (416)
Q Consensus 113 il~l~ 117 (416)
..++.
T Consensus 142 q~~i~ 146 (472)
T COG5016 142 QGTIS 146 (472)
T ss_pred EEEEE
Confidence 87764
No 143
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=68.96 E-value=1e+02 Score=28.95 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014902 92 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 92 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
++.++.+.+.++.|++.|..+|+ +.. +...+ + -.+++..+.+.+.++.+++.
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~-~~~------~~~~~-------~---------~~~~~~~~~~~~~l~~l~~~----- 141 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQ-LAG------YDVYY-------E---------EHDEETRRRFREGLKEAVEL----- 141 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEE-ecC------ccccc-------C---------cCCHHHHHHHHHHHHHHHHH-----
Confidence 35678899999999999999775 321 10000 0 01345567777888888876
Q ss_pred cccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCC
Q 014902 172 NLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 218 (416)
Q Consensus 172 g~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 218 (416)
-+..-..++.|..+.+...+ ..++.+.|+.++..
T Consensus 142 ---A~~~Gv~l~lE~~~~~~~~t----------~~~~~~li~~v~~~ 175 (279)
T TIGR00542 142 ---AARAQVTLAVEIMDTPFMSS----------ISKWLKWDHYLNSP 175 (279)
T ss_pred ---HHHcCCEEEEeeCCCchhcC----------HHHHHHHHHHcCCC
Confidence 45555677888665433211 23445556666643
No 144
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=68.76 E-value=21 Score=38.03 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHHHH--H--cCCCEEEEeeecCCC-ccccccCCCCC--ChHHHHHHH-HHHHHHHHcCCEEEEecCCCcCcCCChh
Q 014902 56 SELFHQAS--S--AGLTVCRTWAFNDGQ-WRALQTSPSVY--DEEVFKALD-FVISEAKKYKIRLILSLTNNWDAYGGKA 127 (416)
Q Consensus 56 ~~dl~~~~--~--~G~n~vRi~~~~~~~-~~~~~~~~g~~--~~~~l~~lD-~~l~~a~~~Gi~vil~l~~~w~~~gg~~ 127 (416)
.+.|+.|= . +.++.+-+=+-.|.. ...-+|++-++ ++...+.+. .|+++|+|++=-+.|+.. .|..
T Consensus 64 ~qILd~LFkp~~Gasl~~lKvEiGgD~nst~GtEPshm~~~~d~n~~RGye~~L~~eAKkrNP~ikl~~L-~W~~----- 137 (669)
T PF02057_consen 64 SQILDYLFKPNFGASLQILKVEIGGDANSTSGTEPSHMHSEDDENYFRGYEWWLMAEAKKRNPNIKLYGL-PWGF----- 137 (669)
T ss_dssp HHHHHHHHSTTTSS--SEEEEEE--SSB-SSSB---S-SSTT---S-SSSHHHHHHHHHHH-TT-EEEEE-ES-B-----
T ss_pred HHHHHHHhCCCCCceeeEEEEEecCCCCCCCCCCCcccccccccccccChhhhhHHHHHhhCCCCeEEEe-ccCC-----
Confidence 35666552 3 347888885544432 11123332222 122222222 578899998655544443 2543
Q ss_pred hHHHhhhhcCCCCCCCcCcCCCHHHHHHH-HHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHH
Q 014902 128 QYVKWGKAAGLNLTSDDEFFSHTTLKSYY-KAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQ 206 (416)
Q Consensus 128 ~y~~w~~~~G~~~~~~~~~~~~~~~~~~~-~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~ 206 (416)
|.|... | ...-|.++.....| .+++.-..+. |+ ..|-...++||=... ..|++
T Consensus 138 --PgW~~~-g-----~~~~~~~~~~~a~Y~~~wl~ga~~~--------~g--l~idYvg~~NEr~~~--------~~~ik 191 (669)
T PF02057_consen 138 --PGWVGN-G-----WNWPYDNPQLTAYYVVSWLLGAKKT--------HG--LDIDYVGIWNERGFD--------VNYIK 191 (669)
T ss_dssp ---GGGGT-T-----SS-TTSSHHHHHHHHHHHHHHHHHH--------H-------EE-S-TTS-----------HHHHH
T ss_pred --CccccC-C-----CCCcccchhhhhHHHHHHHHHHHHH--------hC--CCceEechhhccCCC--------hhHHH
Confidence 677742 2 11224555554444 3444332222 33 255556678998652 36777
Q ss_pred HHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcCcccccccchhhhh-hCCCCCcEEEEeecCCCcCCCCChhHHHHH
Q 014902 207 EMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPNSYATQVGTDFIRN-HQTLGVDFASVHIYADSWISQTISDAHLQF 285 (416)
Q Consensus 207 ~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~~~~~~~g~d~~~~-~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~ 285 (416)
.+...+.+..-++.-.++.++.+. + . +.+...+ .....+|+++.| ||..- +
T Consensus 192 ~lr~~l~~~gy~~vkiva~D~~~~----------~--~----~~~m~~D~~l~~avdvig~H-Y~~~~----~------- 243 (669)
T PF02057_consen 192 WLRKALNSNGYNKVKIVAADNNWE----------S--I----SDDMLSDPELRNAVDVIGYH-YPGTY----S------- 243 (669)
T ss_dssp HHHHHHHHTT-TT-EEEEEEE-ST----------T--H----HHHHHH-HHHHHH--EEEEE-S-TT-------------
T ss_pred HHHHHHhhccccceEEEEeCCCcc----------c--h----hhhhhcCHHHHhcccEeccc-cCCCC----c-------
Confidence 777778777766554444433321 0 1 1111110 123568999999 55420 0
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEecCCc
Q 014902 286 TKSWMEAHIEDAEKYLRMPVLFTEFGVS 313 (416)
Q Consensus 286 ~~~~i~~~~~~a~~~~~kPv~i~EfG~~ 313 (416)
...++. .+|||+-.|-+..
T Consensus 244 --------~~~a~~-~~K~lW~SE~~s~ 262 (669)
T PF02057_consen 244 --------SKNAKL-TGKPLWSSEDYST 262 (669)
T ss_dssp ---------HHHHH-HT-EEEEEEEE-S
T ss_pred --------HHHHHH-hCCCeEEcCCccc
Confidence 011334 6999999996554
No 145
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=68.56 E-value=19 Score=38.27 Aligned_cols=64 Identities=17% Similarity=0.142 Sum_probs=41.9
Q ss_pred EEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014902 32 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 111 (416)
Q Consensus 32 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 111 (416)
..++|.|.. .+. .-.++.++..++.+++.|++++|++-..+ -++.+...++.+++.|+.
T Consensus 80 mL~Rg~N~v--Gy~---~~~d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 80 MLLRGQNLL--GYR---NYADDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKH 138 (596)
T ss_pred EEecccccc--ccc---cCChHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCE
Confidence 347788863 111 12356788999999999999999964211 145555667777777776
Q ss_pred EEEec
Q 014902 112 LILSL 116 (416)
Q Consensus 112 vil~l 116 (416)
+..++
T Consensus 139 ~~~~i 143 (596)
T PRK14042 139 AQGAI 143 (596)
T ss_pred EEEEE
Confidence 66553
No 146
>PLN02877 alpha-amylase/limit dextrinase
Probab=68.42 E-value=16 Score=40.95 Aligned_cols=23 Identities=9% Similarity=0.311 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC
Q 014902 95 FKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 95 l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
...+.++|+.|+++||+||+++.
T Consensus 465 I~efk~mV~~lH~~GI~VImDVV 487 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDVV 487 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEC
Confidence 45689999999999999999974
No 147
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=67.84 E-value=17 Score=34.01 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
+.+++.++.++++|++.|++.... .+. ...+...-+...+.|.++.+.|+++||++.+-.+++
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~ 147 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGK---TPA-GFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH 147 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCC---CCC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 457889999999999999984311 000 000011113345777888999999999998877654
No 148
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=66.71 E-value=1.1e+02 Score=28.41 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccc
Q 014902 94 VFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNL 173 (416)
Q Consensus 94 ~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~ 173 (416)
..+.++++++.|++.|...|.... |.. ..-++..+..+.+.+.++.++..
T Consensus 83 ~~~~~~~~i~~a~~lga~~i~~~~------g~~-----------------~~~~~~~~~~~~~~~~l~~l~~~------- 132 (258)
T PRK09997 83 FRDGVAAAIRYARALGNKKINCLV------GKT-----------------PAGFSSEQIHATLVENLRYAANM------- 132 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECC------CCC-----------------CCCCCHHHHHHHHHHHHHHHHHH-------
Confidence 445666777777777776554321 110 00122344566777777787776
Q ss_pred cccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCc
Q 014902 174 TYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 219 (416)
Q Consensus 174 ~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 219 (416)
.++..-.+++|..|-+..... +..-..++.+.|+++++..
T Consensus 133 -a~~~Gv~l~lE~~n~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09997 133 -LMKEDILLLIEPINHFDIPGF-----HLTGTRQALKLIDDVGCCN 172 (258)
T ss_pred -HHHcCCEEEEEeCCCcCCCCC-----ccCCHHHHHHHHHHhCCCC
Confidence 556666788888886432110 1111345556677777544
No 149
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=66.51 E-value=9.7 Score=40.72 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCC-----Cc--c---------ccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDG-----QW--R---------ALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~-----~~--~---------~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
+..+++|..+|.+|+|+|-+.+..+- .| + ++.+.++ ... ...+..+|++|+..||.|+|++
T Consensus 255 ~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s--~~r-i~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 255 GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPES--PCR-INEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCc--ccc-hHHHHHHHHHHhhCCcEEehhh
Confidence 34566799999999999999442111 11 1 1111111 122 5677899999999999999998
Q ss_pred C
Q 014902 117 T 117 (416)
Q Consensus 117 ~ 117 (416)
.
T Consensus 332 V 332 (757)
T KOG0470|consen 332 V 332 (757)
T ss_pred h
Confidence 4
No 150
>PLN03244 alpha-amylase; Provisional
Probab=65.00 E-value=1e+02 Score=33.98 Aligned_cols=122 Identities=7% Similarity=0.091 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CCcCc--------CCChh-hHHHhhhhcCC--CCCCCcCcCCCHHHHHHHHHHHHH
Q 014902 95 FKALDFVISEAKKYKIRLILSLT-NNWDA--------YGGKA-QYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKT 162 (416)
Q Consensus 95 l~~lD~~l~~a~~~Gi~vil~l~-~~w~~--------~gg~~-~y~~w~~~~G~--~~~~~~~~~~~~~~~~~~~~~v~~ 162 (416)
.+.|.++|++|+++||.|||++. +|-.. ++|.+ .|-... ..|. ......--|.++++++....-++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~-~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTG-KRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccC-CCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 46788999999999999999985 33211 11111 111000 0010 001112235578888888888888
Q ss_pred HHhcccccccccccCCCcEeEEEeccC---------CCCCCCCChhHHHHHHHHHHHHhhhcCCCcEE
Q 014902 163 VLNRVNTFTNLTYKNDPTIFAWELMNE---------PRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLV 221 (416)
Q Consensus 163 ~v~R~N~~tg~~y~~~p~I~~wel~NE---------p~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV 221 (416)
.++... +-|.++-.-.+++-..-+.+ |+... ......++..+...|++..|+.+.
T Consensus 519 WleEyh-IDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~---d~dAv~fL~laN~~ih~~~P~~it 582 (872)
T PLN03244 519 WITEYQ-IDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYV---DKDALMYLILANEILHALHPKIIT 582 (872)
T ss_pred HHHHhC-cCcceeecchhheeeccccccccCCccccccccC---CchHHHHHHHHHHHHHHhCCCeEE
Confidence 887632 22322222222332221111 11111 234677888999999999998544
No 151
>PRK12677 xylose isomerase; Provisional
Probab=63.95 E-value=16 Score=36.60 Aligned_cols=65 Identities=17% Similarity=0.167 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcC--CEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYK--IRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~G--i~vil~l~ 117 (416)
+.+.+-++.++++|++.|.+|.-.++..-..+......-+...+.|+.+.+.|+++| |++.|...
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 346788999999999999998642221000110000011233467778888998855 88877664
No 152
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=63.78 E-value=58 Score=31.93 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=71.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
+.+.+.+.++.+++.|+.+==+|. |..|..-. ..-.+|++.+-....+++..+++|+++++-++.+=....+.+.|.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~~~-~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~ 98 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYL--DIDYMDGY-RVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYE 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--CchhhCCC-CceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHH
Confidence 567889999999999988654543 32231100 112355666666678899999999999876543210001112222
Q ss_pred Hhhh-------hcCCCC-------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCC
Q 014902 131 KWGK-------AAGLNL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 192 (416)
Q Consensus 131 ~w~~-------~~G~~~-------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~ 192 (416)
.=.. ..|.+. ...--=|++|+++++|.+.++.+++- + --.-|.=+|||..
T Consensus 99 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~---------G---vdg~w~D~~Ep~~ 162 (339)
T cd06604 99 EGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDL---------G---VDGIWNDMNEPAV 162 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhC---------C---CceEeecCCCccc
Confidence 1100 011100 00111367899999998888776532 1 1223566899864
No 153
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=63.33 E-value=37 Score=28.42 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 94 VFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 94 ~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
-++.|.-+|+.|++.|+.|++.+.. ....|..-.|+ +.+.++.+-+-++.++++
T Consensus 34 Ey~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG~----------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 34 EYDDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTGL----------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhCC----------CHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999877752 22456654553 577888999999999998
No 154
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=62.60 E-value=67 Score=30.95 Aligned_cols=95 Identities=13% Similarity=0.220 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCC
Q 014902 99 DFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND 178 (416)
Q Consensus 99 D~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~ 178 (416)
.+++..|+++|+++++.+.+ |.. ++... . ....+..+++.++.|.+-+..++++ |+=+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~-~~~-~~~~~--~----------~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~D 105 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITN-LTN-GNFDS--E----------LAHAVLSNPEARQRLINNILALAKK--------YGYD 105 (313)
T ss_pred HHHHHHHHHCCCeEEEEEec-CCC-CCCCH--H----------HHHHHhcCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 36789999999999999874 431 11110 0 0012456888888888888888887 6544
Q ss_pred CcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEe
Q 014902 179 PTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 179 p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~ 223 (416)
--.+-||-. .. ...+.+..+++++...+++.. .++++
T Consensus 106 GidiDwE~~---~~---~d~~~~~~fl~~lr~~l~~~~--~~lsv 142 (313)
T cd02874 106 GVNIDFENV---PP---EDREAYTQFLRELSDRLHPAG--YTLST 142 (313)
T ss_pred cEEEecccC---CH---HHHHHHHHHHHHHHHHhhhcC--cEEEE
Confidence 344445432 11 124568888888888887543 34444
No 155
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=61.04 E-value=45 Score=31.49 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=52.6
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+|+++++.|-+.. .+.+.+.+.-+.+++.|.+..|-..+-. ..+|..|..-..+.|+.+-+.|++
T Consensus 23 ~~~~~~IAGpc~i---------e~~~~~~~~A~~lk~~~~k~~r~~~~Kp------Rtsp~s~~g~g~~gl~~l~~~~~~ 87 (260)
T TIGR01361 23 EGSPIVIAGPCSV---------ESEEQIMETARFVKEAGAKILRGGAFKP------RTSPYSFQGLGEEGLKLLRRAADE 87 (260)
T ss_pred CCcEEEEEeCCcc---------CCHHHHHHHHHHHHHHHHHhccCceecC------CCCCccccccHHHHHHHHHHHHHH
Confidence 5678888885532 3456777888888899999888654421 112333333345667777788999
Q ss_pred cCCEEEEecCCC
Q 014902 108 YKIRLILSLTNN 119 (416)
Q Consensus 108 ~Gi~vil~l~~~ 119 (416)
.||.++-+.++.
T Consensus 88 ~Gl~~~t~~~d~ 99 (260)
T TIGR01361 88 HGLPVVTEVMDP 99 (260)
T ss_pred hCCCEEEeeCCh
Confidence 999999998753
No 156
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=59.49 E-value=1e+02 Score=31.23 Aligned_cols=127 Identities=18% Similarity=0.272 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCC-hhhH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG-KAQY 129 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg-~~~y 129 (416)
+.+.+.+.++.+++.|+..==++. |..|.. ....-.+|++.|..+..+++.++++|+++++.++.+=..... ...|
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~i--D~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWI--DDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE---GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCCccceec--cccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 467899999999999988665543 222211 111235677778888999999999999999888642111111 1233
Q ss_pred HHhhhhcCCCCCCC---------------cCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCC
Q 014902 130 VKWGKAAGLNLTSD---------------DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRC 192 (416)
Q Consensus 130 ~~w~~~~G~~~~~~---------------~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~ 192 (416)
.... ..|.-+.+. ---|++|++++++.+.++.++.. ++= =.-|.=+|||..
T Consensus 118 ~~~~-~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gv---dg~w~D~~E~~~ 183 (441)
T PF01055_consen 118 DEAK-EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDD--------YGV---DGWWLDFGEPSS 183 (441)
T ss_dssp HHHH-HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTT--------ST----SEEEEESTTTBS
T ss_pred hhHh-hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhc--------cCC---ceEEeecCCccc
Confidence 3222 122211110 01267899999999999888776 332 234677999986
No 157
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=59.18 E-value=26 Score=31.52 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 112 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 112 (416)
-.++.-++.+++||.+.+.++... | .+.++.|..+..+|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPm~-----------G---l~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKFFPMG-----------G---LKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE---T-----------T---TTTHHHHHHHHHHHHHCT-EE
T ss_pred ccHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCcee
Confidence 357889999999999999997542 2 234788888999999999998
No 158
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.14 E-value=1.3e+02 Score=29.80 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=56.5
Q ss_pred cEEEeC--CeEEE-CCeE-EEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCCh
Q 014902 17 MVQKQG--NQFVV-NDQP-FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDE 92 (416)
Q Consensus 17 fv~~~g--~~f~~-~G~~-~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~ 92 (416)
.|.++. +.+.+ ++++ +.+.|-.. ..+++.+.+.-+.+++.|++.+|--.|-. ..+|+.|..
T Consensus 84 ~v~v~~~~~~v~iGg~~~l~vIAGPCs---------IEs~eq~l~~A~~lk~~g~~~~r~g~~kp------Rtsp~sf~G 148 (352)
T PRK13396 84 EVVVPTPNGPVPFGENHPVVVVAGPCS---------VENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQG 148 (352)
T ss_pred eEEEecCcCCeEecCCCeEEEEEeCCc---------ccCHHHHHHHHHHHHHcCCCEEEeeeecC------CCCCcccCC
Confidence 455542 23444 4564 56778443 13567888888899999999999644321 123444443
Q ss_pred HHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 93 EVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 93 ~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
-+-+.|+.+-+.+++.||.++-+.++
T Consensus 149 ~g~~gl~~L~~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 149 HGESALELLAAAREATGLGIITEVMD 174 (352)
T ss_pred chHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 34566677778899999999988874
No 159
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.89 E-value=1.1e+02 Score=29.62 Aligned_cols=125 Identities=11% Similarity=0.122 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc---C--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT---S--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGG 125 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~---~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg 125 (416)
+.+.+.+.++.+++.|+.+==+|. |..|..... . .-.+|++.|.....+++..+++|+++++.++..=. -.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~--~~ 97 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAIL--DLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL--KN 97 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEE--echhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc--CC
Confidence 467889999999999987544432 223321110 0 12356666777788999999999999998763211 11
Q ss_pred hhhHHHhhhhcCC---------CC-------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccC
Q 014902 126 KAQYVKWGKAAGL---------NL-------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNE 189 (416)
Q Consensus 126 ~~~y~~w~~~~G~---------~~-------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NE 189 (416)
.+.|..= ...|. +. ...--=|+||++++.|.+.++.+.. .+ .-.-|.=+||
T Consensus 98 ~~~y~e~-~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~---------~G---vdg~w~D~~E 164 (317)
T cd06598 98 SKNWGEA-VKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLID---------QG---VTGWWGDLGE 164 (317)
T ss_pred chhHHHH-HhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhh---------CC---ccEEEecCCC
Confidence 1222211 11111 00 0011125799999999988887632 11 1223667999
Q ss_pred CCC
Q 014902 190 PRC 192 (416)
Q Consensus 190 p~~ 192 (416)
|..
T Consensus 165 p~~ 167 (317)
T cd06598 165 PEV 167 (317)
T ss_pred ccc
Confidence 863
No 160
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.77 E-value=40 Score=34.72 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.++.-++.+++.|+.++|++... | -.+.+...++.+++.|..+.+++.
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~l--------------n--d~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDAL--------------N--DPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccC--------------C--CHHHHHHHHHHHHHcCCEEEEEEE
Confidence 566777999999999999995321 1 267778889999999999876664
No 161
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=58.55 E-value=53 Score=32.24 Aligned_cols=116 Identities=13% Similarity=0.232 Sum_probs=70.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
+.+++++.++.+++.++-.==+|. |..|..- -..-.+|++.|.....+++..++.|+++++.++..-. +|.
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~l--Didy~~~-~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~----- 92 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHV--DVDFQDN-YRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG----- 92 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEE--cCchhcC-CCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----
Confidence 567889999999999976443432 3332110 0112355666666678899999999999887763211 110
Q ss_pred HhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC
Q 014902 131 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 193 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~ 193 (416)
.|-. .+ .-.+ |++|++++.+.+..+.+.+- +- -..|.=+|||...
T Consensus 93 ~~~~-~~----~~pD-ftnp~ar~wW~~~~~~l~~~---------Gv---~~~W~DmnEp~~~ 137 (332)
T cd06601 93 GLGS-PG----LYPD-LGRPDVREWWGNQYKYLFDI---------GL---EFVWQDMTTPAIM 137 (332)
T ss_pred cCCC-Cc----eeeC-CCCHHHHHHHHHHHHHHHhC---------CC---ceeecCCCCcccc
Confidence 1100 01 1123 67899999888877766542 21 2258889999864
No 162
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=58.08 E-value=65 Score=33.69 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=56.9
Q ss_pred ECCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCC-CccccccCCCCCChHHHHHHHHHHHHH
Q 014902 27 VNDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDG-QWRALQTSPSVYDEEVFKALDFVISEA 105 (416)
Q Consensus 27 ~~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~-~~~~~~~~~g~~~~~~l~~lD~~l~~a 105 (416)
.+|+.-|+-||--. ++ .+|++.+.-+.-|+.++++|+++.=- +--|. -.+.+- .-.|+-+-.+.|..+|++|
T Consensus 11 A~g~r~fiCGVvEG---FY-GRPWt~EQRK~LFrrl~~~gl~tYlY-APKDDyKHR~~W--RElY~vEEa~~L~~Li~aA 83 (891)
T KOG3698|consen 11 AVGNRKFICGVVEG---FY-GRPWTPEQRKHLFRRLNQLGLTTYLY-APKDDYKHRSLW--RELYNVEEATYLRNLIEAA 83 (891)
T ss_pred ccccceeEEEeecc---cc-CCCCCHHHHHHHHHHHHhcccceeee-cccchhHHHHHH--HHHhhhHHHHHHHHHHHHH
Confidence 56777788888632 12 35778888899999999999996532 21111 000000 0135656678999999999
Q ss_pred HHcCCEEEEecC
Q 014902 106 KKYKIRLILSLT 117 (416)
Q Consensus 106 ~~~Gi~vil~l~ 117 (416)
+++||..+-.+.
T Consensus 84 ke~~i~F~YAiS 95 (891)
T KOG3698|consen 84 KENNINFVYAIS 95 (891)
T ss_pred HhcCceEEEEcC
Confidence 999999987775
No 163
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.73 E-value=1.7e+02 Score=27.50 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCC----hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD----EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA 127 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~----~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~ 127 (416)
....++.-+.+++.|+.+.=+...... .+. ++..+ ++.++.+.+.++.|++.|...|.. .. +.
T Consensus 56 ~~~~~~l~~~l~~~gl~i~~~~~~~~~---~~~--~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~------~~- 122 (283)
T PRK13209 56 REQRLALVNALVETGFRVNSMCLSAHR---RFP--LGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AG------YD- 122 (283)
T ss_pred HHHHHHHHHHHHHcCCceeEEeccccc---ccC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CC------cc-
Confidence 455666677777888887654221100 010 12122 456788999999999999998753 21 10
Q ss_pred hHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHH
Q 014902 128 QYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQE 207 (416)
Q Consensus 128 ~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~ 207 (416)
.|. + ...++..+.+.+.++.+++. -+.+--.+++|..+.+... + ..+
T Consensus 123 ---~~~---~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~~~~~~---~-------~~~ 169 (283)
T PRK13209 123 ---VYY---E---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMDTPFMN---S-------ISK 169 (283)
T ss_pred ---ccc---c---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecCCcccC---C-------HHH
Confidence 000 0 12345567777788888776 3444556777765433221 1 234
Q ss_pred HHHHhhhcCC
Q 014902 208 MAVYVKSIDA 217 (416)
Q Consensus 208 ~~~~Ir~~dp 217 (416)
+...|++++.
T Consensus 170 ~~~ll~~v~~ 179 (283)
T PRK13209 170 ALGYAHYLNS 179 (283)
T ss_pred HHHHHHHhCC
Confidence 5566666653
No 164
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=57.58 E-value=1.2e+02 Score=29.52 Aligned_cols=107 Identities=15% Similarity=0.261 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCC--EEEEecCCCcCcCCChhhHHH-----hhhhcC-CCCCCCcCcCCCHHHHHHHHHHHHHHHhccccc
Q 014902 99 DFVISEAKKYKI--RLILSLTNNWDAYGGKAQYVK-----WGKAAG-LNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTF 170 (416)
Q Consensus 99 D~~l~~a~~~Gi--~vil~l~~~w~~~gg~~~y~~-----w~~~~G-~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~ 170 (416)
..+++++++.|+ -|++.|..++..+. ...|.+ +....+ .++..-..||++|..++++.+.++.-++.
T Consensus 105 ~~~v~~l~~~gv~~iv~~pLyPqyS~sT-t~s~~~~~~~al~~~~~~~~i~~I~~~~~~p~yI~a~a~~I~~~~~~---- 179 (320)
T COG0276 105 EEAVEELKKDGVERIVVLPLYPQYSSST-TGSYVDELARALKELRGQPKISTIPDYYDEPLYIEALADSIREKLAK---- 179 (320)
T ss_pred HHHHHHHHHcCCCeEEEEECCccccccc-HHHHHHHHHHHHHhcCCCCceEEecCccCChHHHHHHHHHHHHHHHh----
Confidence 467889999999 66777776544321 111221 111112 23334567999999999999998887776
Q ss_pred ccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhc
Q 014902 171 TNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI 215 (416)
Q Consensus 171 tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 215 (416)
..-++.++.+.---=|...... |+.+..++++.+..|++.
T Consensus 180 ----~~~~~~~llfSaHglP~~~~~~-GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 180 ----HPRDDDVLLFSAHGLPKRYIDE-GDPYPQQCQETTRLIAEA 219 (320)
T ss_pred ----cCCCCeEEEEecCCCchhhhhc-CCchHHHHHHHHHHHHHH
Confidence 4323455555554445433323 667899999999999864
No 165
>PRK14565 triosephosphate isomerase; Provisional
Probab=57.54 E-value=1.2e+02 Score=28.22 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=62.0
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGL 138 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~ 138 (416)
...++++|++.+=+ .+++ ..-.++|.. +.+-+=+..|.++||.+|+|+-..-. . ...|
T Consensus 78 ~~mLkd~G~~~vii-GHSE--------RR~~f~Etd-~~V~~Kv~~al~~gl~pIvCiGE~~e------~-----r~~~- 135 (237)
T PRK14565 78 AKMLKECGCSYVIL-GHSE--------RRSTFHETD-SDIRLKAESAIESGLIPIICVGETLE------D-----RENG- 135 (237)
T ss_pred HHHHHHcCCCEEEE-Cccc--------ccCcCCcCH-HHHHHHHHHHHHCCCEEEEEcCCCHH------H-----HHcc-
Confidence 35677888888766 3331 111222221 11222248899999999999864210 0 0011
Q ss_pred CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCC
Q 014902 139 NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 218 (416)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 218 (416)
...+...+.++..+.- . .+-|++| ||-+..-....+-.+-+.++.+.||+..++
T Consensus 136 ------------~~~~~~~~Ql~~~l~~--------~--~~ivIAY----EPvWAIGtG~~a~~e~i~~~~~~Ir~~~~~ 189 (237)
T PRK14565 136 ------------MTKDVLLEQCSNCLPK--------H--GEFIIAY----EPVWAIGGSTIPSNDAIAEAFEIIRSYDSK 189 (237)
T ss_pred ------------ChHHHHHHHHHHHhcC--------C--CCEEEEE----CCHHHhCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 1222223333333332 2 2456665 455432111112335578888999998777
Q ss_pred cEEEecc
Q 014902 219 HLVEIGL 225 (416)
Q Consensus 219 ~lV~~g~ 225 (416)
..|..|.
T Consensus 190 ~~IlYGG 196 (237)
T PRK14565 190 SHIIYGG 196 (237)
T ss_pred ceEEEcC
Confidence 7887773
No 166
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=57.29 E-value=40 Score=32.05 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+-.+++++...+.|+..||++... + -++.+...++.|+++|+++.+.+.
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~--------------~--~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDAL--------------N--DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC--------------C--hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 346889999999999999995421 1 167888899999999999887653
No 167
>PLN02229 alpha-galactosidase
Probab=57.08 E-value=1.3e+02 Score=30.60 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=51.1
Q ss_pred EEEEEeeccchhhhhcCCCChhHHHHHHHHH-----HHcCCCEEEEeeecCCCcccc-ccCCCC--CChHHH-HHHHHHH
Q 014902 32 FYVNGFNTYWLMVFAADQSTRGKVSELFHQA-----SSAGLTVCRTWAFNDGQWRAL-QTSPSV--YDEEVF-KALDFVI 102 (416)
Q Consensus 32 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~-----~~~G~n~vRi~~~~~~~~~~~-~~~~g~--~~~~~l-~~lD~~l 102 (416)
.-+.|.|.|...... -+++.+++..+.| +++|.+.|=| |..|..- ..+.|. .|++-| ..+..+.
T Consensus 62 tPpmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~i----DDgW~~~~rd~~G~l~~d~~rFP~G~k~la 134 (427)
T PLN02229 62 TPQMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNI----DDCWSNLKRDSKGQLVPDPKTFPSGIKLLA 134 (427)
T ss_pred CCCceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEE----cCCcCCCCcCCCCCEEEChhhcCCcHHHHH
Confidence 346788876432221 3567777777764 8899998766 4456321 112232 244444 3588899
Q ss_pred HHHHHcCCEEEEecCC
Q 014902 103 SEAKKYKIRLILSLTN 118 (416)
Q Consensus 103 ~~a~~~Gi~vil~l~~ 118 (416)
+..++.|||.=|....
T Consensus 135 dyiH~~GlKfGIy~d~ 150 (427)
T PLN02229 135 DYVHSKGLKLGIYSDA 150 (427)
T ss_pred HHHHHCCCceEEeccC
Confidence 9999999999887654
No 168
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=55.95 E-value=1.8e+02 Score=27.30 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCC--CCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPS--VYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g--~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.+.+.+.+.++.+++.|+.+==+|. |..|..-. ..- .+|++.+.....+++.++++|+++++.++
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~l--D~~~~~~~-~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVL--DDDYTDGY-GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEE--CcccccCC-ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 3567899999999999988544433 33332110 112 46677777788999999999999998665
No 169
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=55.24 E-value=33 Score=37.00 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEee-e--cCCCccccc-cCCCCCChH--HHHHHHHHHHHHHHcCCEEEEecCCCcCcCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWA-F--NDGQWRALQ-TSPSVYDEE--VFKALDFVISEAKKYKIRLILSLTNNWDAYG 124 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~-~--~~~~~~~~~-~~~g~~~~~--~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~g 124 (416)
+-.+..+.+..++++|+..+=+-. | -.++.+.+. ..|.++|++ +.+.|.+++++++++||-+|+++..|-...+
T Consensus 17 tF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav~ 96 (889)
T COG3280 17 TFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAVG 96 (889)
T ss_pred CHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhcc
Confidence 346778999999999999876511 1 111111111 112344543 4678889999999999999999975433333
No 170
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=54.52 E-value=47 Score=34.52 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=45.2
Q ss_pred EEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014902 32 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 111 (416)
Q Consensus 32 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 111 (416)
..++|.|.. .+. .-..+.++.+++..++.|++++||+... | -++.+...++.+++.|..
T Consensus 81 mL~Rg~N~v--Gy~---~y~ddvv~~fv~~a~~~Gidi~RIfd~l--------------n--dv~nl~~ai~~vk~ag~~ 139 (499)
T PRK12330 81 MLLRGQNLL--GYR---HYEDEVVDRFVEKSAENGMDVFRVFDAL--------------N--DPRNLEHAMKAVKKVGKH 139 (499)
T ss_pred EEEcccccC--Ccc---CcchhHHHHHHHHHHHcCCCEEEEEecC--------------C--hHHHHHHHHHHHHHhCCe
Confidence 346777752 111 1124678899999999999999996421 1 157788899999999998
Q ss_pred EEEec
Q 014902 112 LILSL 116 (416)
Q Consensus 112 vil~l 116 (416)
+..++
T Consensus 140 ~~~~i 144 (499)
T PRK12330 140 AQGTI 144 (499)
T ss_pred EEEEE
Confidence 85554
No 171
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=54.00 E-value=1.8e+02 Score=28.22 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=72.4
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 128 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 128 (416)
+.+++.+.++.+++.|+.+==+|. |..|-. ... .-.+|++.|.....+|+.++++|+++++.++..=. -+.+.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~--~~~~~ 96 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQ--DWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG--PETEN 96 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--echhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC--CCChh
Confidence 567899999999999876543432 222110 001 12356777777889999999999999987753211 11122
Q ss_pred HHHhhhhcCCCC--------------CCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC
Q 014902 129 YVKWGKAAGLNL--------------TSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 193 (416)
Q Consensus 129 y~~w~~~~G~~~--------------~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~ 193 (416)
|..-.. .|.-+ ....-=|+||++++.|.+.++..+.. ++ .-.-|.=+|||...
T Consensus 97 y~e~~~-~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~G---vdg~w~D~~Ep~~~ 163 (319)
T cd06591 97 YKEMDE-KGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD--------KG---VDAWWLDAAEPEYS 163 (319)
T ss_pred HHHHHH-CCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc--------CC---CcEEEecCCCCCcc
Confidence 222111 11100 01112367899999888777654433 22 23347779998753
No 172
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=53.45 E-value=1.2e+02 Score=29.25 Aligned_cols=99 Identities=15% Similarity=0.340 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHc-CCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccc
Q 014902 97 ALDFVISEAKKY-KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTY 175 (416)
Q Consensus 97 ~lD~~l~~a~~~-Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y 175 (416)
.+.++....+++ |+++++.+.. |... ..+ .....+++.++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~s---~~f--------------~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTES---DNF--------------SSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCCC---cch--------------hHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 445555656664 9999998863 3221 011 12345788888888888888887 5
Q ss_pred cCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhc---CCCcEEEecc
Q 014902 176 KNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI---DAKHLVEIGL 225 (416)
Q Consensus 176 ~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~---dp~~lV~~g~ 225 (416)
+=+--.+-||- |.... ...+.+..+++++...+++. .++.+|++..
T Consensus 107 ~~DGidiDwE~---~~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v 155 (334)
T smart00636 107 GFDGIDIDWEY---PGARG-DDRENYTALLKELREALDKEGAEGKGYLLTIAV 155 (334)
T ss_pred CCCeEEECCcC---CCCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEEe
Confidence 43322333442 22210 12356888888888888765 4566676643
No 173
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=52.94 E-value=44 Score=31.82 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++.|+.++++|+.-|-+ .|- +.-++..++.++++++.|.++.|.| ++|
T Consensus 108 ~~~~f~~~~~~Gv~GvKi-dF~-----------~~d~Q~~v~~y~~i~~~AA~~~Lmv--nfH 156 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKI-DFM-----------DRDDQEMVNWYEDILEDAAEYKLMV--NFH 156 (273)
T ss_dssp HHHHHHHHHHCTEEEEEE-E-------------SSTSHHHHHHHHHHHHHHHHTT-EE--EET
T ss_pred HHHHHHHHHHcCCCEEee-CcC-----------CCCCHHHHHHHHHHHHHHHHcCcEE--Eec
Confidence 488888888888888888 221 1235788999999999999997655 566
No 174
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.24 E-value=2e+02 Score=26.77 Aligned_cols=131 Identities=7% Similarity=0.055 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCC-ccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHh
Q 014902 54 KVSELFHQASSAGLTVCRTWAFNDGQ-WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKW 132 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~~~-~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w 132 (416)
.+++.-+.+++.|+.+.=+......- +..+.+ +...-++.++.+++.++.|++.|.+.|+....+ .+.
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~----~~~------ 116 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNGYPYNMMLG-DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAH----AGY------ 116 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccCcCccccCC-CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCC----CCC------
Confidence 44455556667777655432211100 000011 111224568899999999999999987552210 000
Q ss_pred hhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHh
Q 014902 133 GKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYV 212 (416)
Q Consensus 133 ~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~I 212 (416)
--+..+..+.+.+.++.++.. -+...-.++.|..+...... ..=..++...+
T Consensus 117 -------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~-------~~t~~~~~~l~ 168 (275)
T PRK09856 117 -------------LTPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNV-------VCNANDVLHAL 168 (275)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCcccc-------cCCHHHHHHHH
Confidence 012334556666777777765 34444456677554222111 11145667777
Q ss_pred hhcC-CCcEEEe
Q 014902 213 KSID-AKHLVEI 223 (416)
Q Consensus 213 r~~d-p~~lV~~ 223 (416)
++++ |+.-+.+
T Consensus 169 ~~~~~~~v~~~~ 180 (275)
T PRK09856 169 ALVPSPRLFSMV 180 (275)
T ss_pred HHcCCCcceeEE
Confidence 7776 5543433
No 175
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=52.04 E-value=31 Score=32.62 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|+..||+.. ....++.+..+++.|+++|++|.+.+.
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------------~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------------HKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------------ccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4688888999999999932 112478888999999999999988775
No 176
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=51.76 E-value=46 Score=34.09 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
..++++++.+.+.|++.+|++.... + ...+...++.|+++|+.+.+++.
T Consensus 96 dvv~~~v~~A~~~Gvd~irif~~ln--------------d--~~n~~~~v~~ak~~G~~v~~~i~ 144 (448)
T PRK12331 96 DVVESFVQKSVENGIDIIRIFDALN--------------D--VRNLETAVKATKKAGGHAQVAIS 144 (448)
T ss_pred hhHHHHHHHHHHCCCCEEEEEEecC--------------c--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 4678899999999999999965311 1 23577789999999999876653
No 177
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=51.55 E-value=74 Score=30.81 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=41.1
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
+.+.+++.++.+++.|.+.|.++.-.....+.-.+....++ .+.+..++++|+++|+.+.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~---~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS---EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC---HHHHHHHHHHHHHcCCEEEEEe
Confidence 46788899999999999999997521111110000001244 3556789999999999986544
No 178
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=51.34 E-value=26 Score=32.67 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..|=+++||-..|.+-+.+-...=.-..+.++..++.+.++||+|-+
T Consensus 39 ~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~ 100 (241)
T PRK14842 39 NAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHH 100 (241)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57889999999999999999999866664321110000011224555666777889999964
No 179
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.20 E-value=30 Score=32.65 Aligned_cols=59 Identities=15% Similarity=-0.062 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAF-NDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~-~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.||++.- |+.. .+..-+.-.++.++.+.+++..|+++|++|.+++.
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~---~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFL---REASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHH---HHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 46888999999999999542 1110 00111222367789999999999999999988875
No 180
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=50.80 E-value=36 Score=31.80 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+..+++.|+.++++|+++|=| |++.- ..+ .+..-++|..+++.|++|+-.+.
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---SdGti--------~l~---~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---SDGTI--------DLP---EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----SSS--------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---cCCce--------eCC---HHHHHHHHHHHHHCCCEEeeccc
Confidence 457899999999999999988 43310 122 23445679999999999987664
No 181
>PRK09989 hypothetical protein; Provisional
Probab=50.80 E-value=36 Score=31.73 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++-++.++++|+..|+++... .+. ...+....+...+.|.++.+.|+++|+++.+...
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l 145 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGV---VPA-GEDAERYRAVFIDNLRYAADRFAPHGKRILVEAL 145 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccC---CCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 446778888899999999984321 000 0000111133568889999999999999987654
No 182
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.47 E-value=35 Score=31.10 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 112 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 112 (416)
-.++.-++.+++||.+.|.++... | .+.++.|..+-.+|.++|+++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~-----------G---l~~leE~~avA~aca~~g~~l 180 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG-----------G---LKHLEEYAAVAKACAKHGFYL 180 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC-----------C---cccHHHHHHHHHHHHHcCCcc
Confidence 467899999999999999997642 2 223667777888888888863
No 183
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=50.26 E-value=62 Score=34.80 Aligned_cols=39 Identities=28% Similarity=0.738 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEeEEEeccCCCCCCC
Q 014902 147 FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCTSD 195 (416)
Q Consensus 147 ~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~-p~I~~wel~NEp~~~~~ 195 (416)
|.||.++++++.... ..+ |..+ |.++.|.=||||.....
T Consensus 477 f~nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFnG 516 (915)
T KOG1066|consen 477 FINPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFNG 516 (915)
T ss_pred ccCHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccCC
Confidence 447999999988876 455 6665 77999999999998754
No 184
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=49.93 E-value=27 Score=32.41 Aligned_cols=62 Identities=8% Similarity=0.233 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..|=+++||-..|.+-+.+-...=.-.-+.+++.++.+.++||++-+
T Consensus 34 ~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~ 95 (233)
T PRK14841 34 EVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDREMELLRRERVRVRI 95 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 67889999999999999999999866664321111000011123455566678889998854
No 185
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=49.46 E-value=44 Score=23.86 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
...++.++.+++.|++.+=+ .| .+ .+..+..+.+.+++.||++++-+
T Consensus 15 ~~~~~~~~~a~~~g~~~v~i---TD---------h~-----~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAI---TD---------HG-----NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEE---ee---------CC-----cccCHHHHHHHHHHcCCeEEEEE
Confidence 34678999999999999877 21 11 13334466778889999998643
No 186
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=49.27 E-value=1e+02 Score=29.27 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCC--CCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCCh--
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSP--SVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGK-- 126 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~--g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~-- 126 (416)
+.+..++.++.++++|+..+=| |..|......+ .......-..|.+|++-|++.|+.|+|-.+ |...++.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~--~~~~~~~~~ 103 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH--SETGGNVAN 103 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE--CCHTTBHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe--CCcchhhHh
Confidence 6789999999999999998876 44564311110 001111124677999999999999998776 3332221
Q ss_pred -----hhHHHhhhhcCCCCCCCcCcCC--CHHHHHHHHHHHHHHHhc
Q 014902 127 -----AQYVKWGKAAGLNLTSDDEFFS--HTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 127 -----~~y~~w~~~~G~~~~~~~~~~~--~~~~~~~~~~~v~~~v~R 166 (416)
+....+...-|+.. =..+|+. +....+.|.+.++..+++
T Consensus 104 ~~~~~~~~f~~~~~~Gv~G-vKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 104 LEKQLDEAFKLYAKWGVKG-VKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHCCHHHHHHHHHHCTEEE-EEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCE-EeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 11122222223211 0224554 456888999999888886
No 187
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=49.12 E-value=2.5e+02 Score=31.11 Aligned_cols=158 Identities=15% Similarity=0.224 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHHcCC--CEEEEeeecCCC-ccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChh
Q 014902 51 TRGKVSELFHQASSAGL--TVCRTWAFNDGQ-WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKA 127 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~--n~vRi~~~~~~~-~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~ 127 (416)
+++.+.+.++.+++..+ .++++ |.. |.. .-..-.+|+..|-..+.+++..++.||++++-+...-.. -.+
T Consensus 278 ~e~~v~~~i~~~~~~~IP~d~~~l----D~~~~~~-~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~--d~~ 350 (772)
T COG1501 278 DEDEVLEFIDEMRERDIPLDVFVL----DIDFWMD-NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQ--DSP 350 (772)
T ss_pred cHHHHHHHHhhcccccCcceEEEE----eehhhhc-cccceEECcccCCCHHHHHHHHHhcCceEEEEecccccc--CCc
Confidence 35667777777776554 44444 111 221 001234666667777799999999999999877522100 001
Q ss_pred hHHHhhhhcCCCCC---------------CCcCcCCCHHHHHHHHH-HHHHHHhcccccccccccCCCcEeEEEeccCCC
Q 014902 128 QYVKWGKAAGLNLT---------------SDDEFFSHTTLKSYYKA-HVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 191 (416)
Q Consensus 128 ~y~~w~~~~G~~~~---------------~~~~~~~~~~~~~~~~~-~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~ 191 (416)
.|.. ....|.-+. ..--=|+||+++++|.+ ..+.++. -.-..-|.=+|||.
T Consensus 351 ~~~e-~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d------------~Gv~g~W~D~nEp~ 417 (772)
T COG1501 351 LFKE-AIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLD------------LGVDGFWNDMNEPE 417 (772)
T ss_pred hHHH-HHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHh------------cCccEEEccCCCCc
Confidence 1111 111121110 11112679999999985 3333443 22334477799999
Q ss_pred CCCCC------ChhH-----HHHHHHHHHHHhhhcCCC-cEEEeccccc
Q 014902 192 CTSDP------SGDT-----LQSWIQEMAVYVKSIDAK-HLVEIGLEGF 228 (416)
Q Consensus 192 ~~~~~------~~~~-----~~~w~~~~~~~Ir~~dp~-~lV~~g~~g~ 228 (416)
..... .+.. ..-+.+...+++|+..|+ +++++.-.|+
T Consensus 418 ~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~ 466 (772)
T COG1501 418 PFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGY 466 (772)
T ss_pred cccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 76322 1111 223456778899999765 4555443333
No 188
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.77 E-value=36 Score=33.03 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 58 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 58 dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
-.+.++++|.+++-+.++-+.. .+-..|+...+.+.++.++|++.||..+|.+..
T Consensus 110 S~~rike~GadavK~Llyy~pD------~~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYDVD------EPDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred hHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 3667899999999997653321 234577888999999999999999999998874
No 189
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=48.37 E-value=2.6e+02 Score=26.87 Aligned_cols=239 Identities=10% Similarity=0.123 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC---CCCCChHHHHHHHHHH-HHHHHcCCEEEEecC-CCcCcCCCh
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS---PSVYDEEVFKALDFVI-SEAKKYKIRLILSLT-NNWDAYGGK 126 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~---~g~~~~~~l~~lD~~l-~~a~~~Gi~vil~l~-~~w~~~gg~ 126 (416)
.+.++.-|+.++++|+|+|=+=+|+|..-...... |...=+---+.+-++. ....+.|++|..=+- -.|.. +..
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~l-p~~ 94 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDL-PKV 94 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccC-CCc
Confidence 35678889999999999998867765321100000 1111112223445555 556689998853211 01222 221
Q ss_pred hhHHHhhhhcCCC-CCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEe---ccCCCCCCCCChhHHH
Q 014902 127 AQYVKWGKAAGLN-LTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWEL---MNEPRCTSDPSGDTLQ 202 (416)
Q Consensus 127 ~~y~~w~~~~G~~-~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel---~NEp~~~~~~~~~~~~ 202 (416)
+....+......+ ....-+.| +|+.++..++.-+.++.. +.+.|+-|.|+..+--+|+ -++|.. ....+.+.
T Consensus 95 ~~~~~~~~~~~~~~~y~RLSPf-~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~--~~Kt~~Li 170 (294)
T PF14883_consen 95 KRADEVRTDRPDPDGYRRLSPF-DPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPAD--RQKTRALI 170 (294)
T ss_pred chhhhccccCCCCCCceecCCC-CHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhh--HHHHHHHH
Confidence 1111110000000 00112223 688888888888887765 7889999999865544551 111111 01124577
Q ss_pred HHHHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcC--cccccccchhhhhhCCCCCcEEEEeecCCCcCCCCChh
Q 014902 203 SWIQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPN--SYATQVGTDFIRNHQTLGVDFASVHIYADSWISQTISD 280 (416)
Q Consensus 203 ~w~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~--~~~~~~g~d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~ 280 (416)
.+..++...+|...|... |.. ..+... ..+|. .|- .+++.. ....-|+..+=..|.. ...
T Consensus 171 ~ft~eL~~~v~~~rp~lk-TAR--Niya~p-----vl~P~se~Wf---AQnl~~--fl~~YD~taimAMPym--E~~--- 232 (294)
T PF14883_consen 171 DFTMELAAAVRRYRPDLK-TAR--NIYAEP-----VLNPESEAWF---AQNLDD--FLKAYDYTAIMAMPYM--EQA--- 232 (294)
T ss_pred HHHHHHHHHHHHhCccch-hhh--cccccc-----cCCcchhhHH---HHhHHH--HHHhCCeeheeccchh--ccc---
Confidence 888999999999887643 222 112111 11331 121 111211 1235677766555532 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CcEEEEecCCccCC
Q 014902 281 AHLQFTKSWMEAHIEDAEKYLR-MPVLFTEFGVSAKD 316 (416)
Q Consensus 281 ~~~~~~~~~i~~~~~~a~~~~~-kPv~i~EfG~~~~~ 316 (416)
+...+|+.+.++..++..+ +-=+|-|.-.....
T Consensus 233 ---~~~~~WL~~Lv~~v~~~p~~l~KtvFELQa~dwr 266 (294)
T PF14883_consen 233 ---EDPEQWLAQLVDAVAARPGGLDKTVFELQAVDWR 266 (294)
T ss_pred ---cCHHHHHHHHHHHHHhcCCcccceEEEEeccCCc
Confidence 1235677776666655332 22355577665543
No 190
>PTZ00333 triosephosphate isomerase; Provisional
Probab=48.30 E-value=1.7e+02 Score=27.48 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
...++++|++.+=+ .+++- ...|+|. =+.+.+-+..|.++||.+|+|+-.
T Consensus 82 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 82 AEMLKDLGINWTIL-GHSER--------RQYFGET-NEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35778899998866 33321 1122222 145566788999999999999864
No 191
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=48.07 E-value=54 Score=33.61 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccc---c---CCCCCChHH---HHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQ---T---SPSVYDEEV---FKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~---~---~~g~~~~~~---l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
..+.+.|+.|+..-+|++-.++.++...|.-. | ..|.|+... -+..-.+|+-|+-|||+|+..+.
T Consensus 198 ~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 198 KVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred HHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 57899999999999999987765443322110 1 124454321 24556899999999999998885
No 192
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.66 E-value=40 Score=33.16 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
.-..+.++++|.++|=+.++-... .+...+...++.+.++.++|+++||-+++.+
T Consensus 109 ~~sve~a~~~GAdAVk~lv~~~~d------~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 109 NWSVRRIKEAGADAVKLLLYYRPD------EDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred cccHHHHHHcCCCEEEEEEEeCCC------cchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344677999999999997763210 1222456888999999999999999999875
No 193
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=47.56 E-value=2.4e+02 Score=27.29 Aligned_cols=100 Identities=15% Similarity=0.309 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHH-cCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 014902 96 KALDFVISEAKK-YKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 174 (416)
Q Consensus 96 ~~lD~~l~~a~~-~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~ 174 (416)
..+.++....++ .++++++.+.. |.....+ ...-.+++.++.|.+-+..++++
T Consensus 70 ~~~~~~~~lk~~~p~lkvl~siGG-~~~s~~f-----------------~~~~~~~~~r~~Fi~siv~~l~~-------- 123 (322)
T cd06548 70 GNFGQLRKLKQKNPHLKILLSIGG-WTWSGGF-----------------SDAAATEASRAKFADSAVDFIRK-------- 123 (322)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEeC-CCCCCCc-----------------hhHhCCHHHHHHHHHHHHHHHHh--------
Confidence 444555544443 46999999863 4321111 11335788888888888888888
Q ss_pred ccCCCcEeEEEeccCCCCC-------CCCChhHHHHHHHHHHHHhhhcC----CCcEEEec
Q 014902 175 YKNDPTIFAWELMNEPRCT-------SDPSGDTLQSWIQEMAVYVKSID----AKHLVEIG 224 (416)
Q Consensus 175 y~~~p~I~~wel~NEp~~~-------~~~~~~~~~~w~~~~~~~Ir~~d----p~~lV~~g 224 (416)
|.=+--.+-||- |... .....+.+..+++++.+++++.. ++.++++.
T Consensus 124 ~~fDGidiDwE~---p~~~~~~~~~~~~~d~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~a 181 (322)
T cd06548 124 YGFDGIDIDWEY---PGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKYLLTIA 181 (322)
T ss_pred cCCCeEEECCcC---CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhhhccCCceEEEEE
Confidence 543333334552 3221 11123567788888888887653 45566654
No 194
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=47.05 E-value=38 Score=32.43 Aligned_cols=60 Identities=17% Similarity=0.061 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.||++..... .. .+..-+.-.++.++.+..+++.|+++|+++..++.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~-~~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASE-AF-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCH-HH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 57888899999999999653210 00 01111233467889999999999999999986664
No 195
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=46.47 E-value=35 Score=31.47 Aligned_cols=58 Identities=17% Similarity=0.427 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+++.++.+.++|+..+=+++||-..|.+-+. +. ...+ +.|+..+....++||+|-+
T Consensus 30 ~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~---EV-~~Lm~L~~~~l~~~~~~~~~~~irvr~ 91 (226)
T TIGR00055 30 KSLRRILRWCANLGVECLTLYAFSTENWKRPKE---EV-DFLMELFEKKLDREVKELHRYNVRIRI 91 (226)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHH---HH-HHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 578899999999999999999998666653211 11 1122 3444555667889999864
No 196
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=46.11 E-value=39 Score=35.61 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCC--ccccc-cCCCCCCh--HHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQ--WRALQ-TSPSVYDE--EVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~--~~~~~-~~~g~~~~--~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
-.-+.+-++.++++|++++=+-.+.... ...+. .....+++ .-++.+..+++++.++||++|+++.
T Consensus 39 ~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 39 LKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred cccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 3456788999999999998553322110 00000 01111222 2367888999999999999999984
No 197
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.97 E-value=37 Score=31.85 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.||+...... . .++..-+.-.++.++.+..+++.|+++|+.|.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~-~-~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSD-I-HLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 56788899999999999542110 0 000011222367788999999999999999876654
No 198
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.89 E-value=37 Score=31.44 Aligned_cols=58 Identities=16% Similarity=0.342 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+++.++.+.++|+..+=+++||-..|.+-+. +.+ ..+ ..|...+....++||+|-+
T Consensus 37 ~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~---EV~-~Lm~L~~~~l~~~~~~~~~~~irvr~ 98 (230)
T PRK14837 37 KRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDS---EIE-HLMFLIADYLSSEFNFYKKNNIKIIV 98 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHH---HHH-HHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 578899999999999999999998666643211 111 112 3344555677889999864
No 199
>PRK14567 triosephosphate isomerase; Provisional
Probab=45.72 E-value=2.2e+02 Score=26.75 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=31.4
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
-..++++|++.+=+ .+++- ...|.|. =+.+-.-+..|.++||.+|+|+-.
T Consensus 78 ~~mLkd~G~~yvii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pI~CiGE 127 (253)
T PRK14567 78 ARMLEDIGCDYLLI-GHSER--------RSLFAES-DEDVFKKLNKIIDTTITPVVCIGE 127 (253)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCccCCC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35678899998866 33321 1122222 123445677899999999999864
No 200
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=45.31 E-value=2.3e+02 Score=28.91 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC-cCcCCChhhHH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN-WDAYGGKAQYV 130 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~-w~~~gg~~~y~ 130 (416)
..++.+.-+.+++.|+|.+=+ ++..-. ..+...++...|..+-++-+.-+.+||++.|++.-. -...||..
T Consensus 182 ~qR~kDYAR~laSiGINg~v~---NNVNvk--~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsinfaSP~~lGgL~--- 253 (684)
T COG3661 182 DQRMKDYARALASIGINGTVL---NNVNVK--KAESYLITAPFLAKAAKLADIFRPYGIKVYLSINFASPMELGGLK--- 253 (684)
T ss_pred hHHHHHHHHHHhhcCcceEEe---cccccc--hhhhheechHhHHHHHHHHHHhhhccceEEEEeccCCccccCCcC---
Confidence 467788888999999998866 322100 011122455568888899999999999999998511 11123321
Q ss_pred HhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHh
Q 014902 131 KWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLN 165 (416)
Q Consensus 131 ~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~ 165 (416)
.. -..|+.+++++++-++.|-+
T Consensus 254 ------------TA-DPLDe~VrawWkeka~~IY~ 275 (684)
T COG3661 254 ------------TA-DPLDEAVRAWWKEKADEIYK 275 (684)
T ss_pred ------------cC-CcccHHHHHHHHHHHHHHHH
Confidence 11 12467787777777776644
No 201
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=45.26 E-value=38 Score=31.54 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
..+.+.++.+.++|+..|=+++||-..|.+-+ .+.+ ..+ ..++..++.+.+.||++-+
T Consensus 40 ~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~---~EV~-~Lm~L~~~~l~~~~~~~~~~~irvr~ 101 (239)
T PRK14839 40 EAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPA---AEVG-GLMRLLRAYLRNETERLARNGVRLTV 101 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcCCCH---HHHH-HHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57889999999999999999999866664321 1111 122 3445566778889999854
No 202
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=45.21 E-value=1.9e+02 Score=27.08 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=29.7
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
.+.++++|++.+=+ .+++ +.-.|+|.. +.+.+=+..|.++||.+|+|+-.
T Consensus 79 ~~mLkd~G~~~vii-GHSE--------RR~~f~Etd-~~v~~K~~~a~~~gl~pIvCiGE 128 (250)
T PRK00042 79 AEMLKDLGVKYVII-GHSE--------RRQYFGETD-ELVNKKVKAALKAGLTPILCVGE 128 (250)
T ss_pred HHHHHHCCCCEEEe-Cccc--------ccCccCcCH-HHHHHHHHHHHHCCCEEEEEcCC
Confidence 45678899998866 3332 111222221 12222234499999999999964
No 203
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=45.13 E-value=65 Score=29.95 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+..+++.++.++++|+++|=+ |++. -.+++ +..-++|+.++++|++|+..+.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---S~G~--------~~i~~---~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---SDGS--------MEISL---EERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---cCCc--------cCCCH---HHHHHHHHHHHhCCCeEecccc
Confidence 467889999999999999988 4331 12332 3445789999999999986553
No 204
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=44.60 E-value=46 Score=32.38 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
.-..+.++++|.+++-+.++-+.. .+-..|+...+.+.++.++|++.||..+|.+..
T Consensus 110 ~ws~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 110 EWSVKRLKEAGADAVKFLLYYDVD------GDEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred hhhHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 345778899999999997653221 233567888999999999999999999999874
No 205
>PRK05434 phosphoglyceromutase; Provisional
Probab=44.48 E-value=1.5e+02 Score=31.06 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=54.4
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+|+.+-+.|.=.--. .+ +..+.+...++.+++.|++-|++++|.|+. .+-...++..++++.+.+++
T Consensus 108 ~~~~lHl~GL~Sdgg--VH---sh~~hl~~l~~~a~~~g~~~v~vH~~~DGR--------D~~p~s~~~~i~~l~~~~~~ 174 (507)
T PRK05434 108 NGGALHLMGLLSDGG--VH---SHIDHLFALLELAKEEGVKKVYVHAFLDGR--------DTPPKSALGYLEELEAKLAE 174 (507)
T ss_pred cCCeEEEEEeccCCC--cc---cHHHHHHHHHHHHHHcCCCEEEEEEecCCC--------CCCchhHHHHHHHHHHHHHH
Confidence 466677777643100 00 124678889999999999999999998773 12235678889999999999
Q ss_pred cCCEEEEecC
Q 014902 108 YKIRLILSLT 117 (416)
Q Consensus 108 ~Gi~vil~l~ 117 (416)
.|.--|.++.
T Consensus 175 ~~~~~iasv~ 184 (507)
T PRK05434 175 LGVGRIASVS 184 (507)
T ss_pred hCCeeEEEEe
Confidence 9986676664
No 206
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.46 E-value=39 Score=31.72 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD---EEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~---~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+++.++.+.++|+..|=+++||-..|.+-+ .+.+ .-.-+.++..+....++||++-+
T Consensus 53 ~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~---~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~ 114 (250)
T PRK14840 53 KSLPQIVDTALHLGIEVLTLFAFSTENFSRSK---EEVAELFSLFNSQLDSQLPYLHENEIRLRC 114 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 67889999999999999999999866664311 1111 11124566667788899999854
No 207
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=44.28 E-value=2.6e+02 Score=27.45 Aligned_cols=104 Identities=10% Similarity=0.211 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHH-cCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhccccccccc
Q 014902 96 KALDFVISEAKK-YKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLT 174 (416)
Q Consensus 96 ~~lD~~l~~a~~-~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~ 174 (416)
+.+.++....++ .+++|+|.+. .|..... .+. ....+++.++.|.+-+-.++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiG-G~~~~~~--~f~--------------~~~~~~~~r~~fi~~iv~~l~~-------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIG-GWNFGSA--KFS--------------AMAASPENRKTFIKSAIAFLRK-------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEc-CCCCCcc--hhH--------------HHhCCHHHHHHHHHHHHHHHHH--------
Confidence 444555443333 4899999985 2332110 111 1345778888888777778887
Q ss_pred ccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEecc
Q 014902 175 YKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIGL 225 (416)
Q Consensus 175 y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g~ 225 (416)
|+=+--.+-||-.+-.. ......+.+..+++++.+.+++..++.++++..
T Consensus 111 ~~~DGidiDwE~p~~~~-~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~av 160 (362)
T cd02872 111 YGFDGLDLDWEYPGQRG-GPPEDKENFVTLLKELREAFEPEAPRLLLTAAV 160 (362)
T ss_pred cCCCCeeeeeeccccCC-CCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEEe
Confidence 55454555576433211 111123568888899999988776666776643
No 208
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=44.24 E-value=35 Score=31.97 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.+..+.++|+..|=+++||-..|.+-+.+-...-.-.-+.+++.+..+.++|+++-+
T Consensus 51 ~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~ 112 (249)
T PRK14831 51 DALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRF 112 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 67889999999999999999999855564311110000001123445556678899998854
No 209
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=43.84 E-value=3.1e+02 Score=26.47 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 96 KALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 96 ~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
..+..-|..++++|++|+|.+-. |. +. ....++..++.|.+.+..+++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-~~--~~-------------------~~~~~~~~~~~fa~sl~~~~~~ 108 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-AN--GH-------------------VDLNHTAQEDNFVDSIVAIIKE 108 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-CC--Cc-------------------cccCCHHHHHHHHHHHHHHHHH
Confidence 44566788999999999998741 11 00 0134566777777777777776
No 210
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=43.82 E-value=42 Score=31.08 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
..+.+.++.+.++|+..|=+|+||-..|.+-+.+-...=.-.-..|+..+....++||++-+
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 85 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRI 85 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 57889999999999999999999866664321110000001123444555667889998854
No 211
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=43.76 E-value=72 Score=29.98 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=44.1
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
-..+|+.|.+.+.+.++-+.. .+ ..|+.-+..+.++..+|.+.+|-.+|.+..
T Consensus 117 a~riK~~G~~avK~Lvy~~~D------~~-e~neqk~a~ierigsec~aedi~f~lE~lt 169 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSD------ED-EINEQKLAYIERIGSECHAEDLPFFLEPLT 169 (306)
T ss_pred HHHHHHhcccceEEEEEEcCC------ch-HHhHHHHHHHHHHHHHhhhcCCceeEeeee
Confidence 567899999999997764321 23 678999999999999999999999998874
No 212
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=43.74 E-value=49 Score=32.15 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=44.2
Q ss_pred HHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 58 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 58 dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
..+.++++|.+++-+.++-+.. .+-..|+...+.+.++-++|++.||..+|.+..
T Consensus 111 s~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYDVD------DAEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeCCC------CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 4677899999999997653221 233567888999999999999999999999874
No 213
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=43.59 E-value=64 Score=31.70 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.||+.... ++ .+.+.+.++.|+++|+.+.+.+.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~--------------~e--~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHC--------------TE--ADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEec--------------ch--HHHHHHHHHHHHHCCCeEEEEEE
Confidence 378999999999999995421 11 24567889999999999988875
No 214
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=43.55 E-value=2.8e+02 Score=25.87 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=34.3
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
.+.++++|++.+=+ .+++- ...|+|. -+.+..-+..|.++||.+|+|+-.
T Consensus 77 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiGE 126 (242)
T cd00311 77 AEMLKDAGAKYVII-GHSER--------RQYFGET-DEDVAKKVKAALEAGLTPILCVGE 126 (242)
T ss_pred HHHHHHcCCCEEEe-Ccccc--------cCcCCCC-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45688899998866 33321 1123332 355667788999999999999864
No 215
>PRK10426 alpha-glucosidase; Provisional
Probab=42.99 E-value=4.6e+02 Score=28.27 Aligned_cols=154 Identities=14% Similarity=0.182 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-C-------CCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-S-------PSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAY 123 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~-------~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~ 123 (416)
.+++.+.++.+++.|+.+==||. + .|..... . .-.+|++.+.....+++..++.|+++++-++.+-.
T Consensus 220 ~~~v~~v~~~~r~~~IP~d~i~l--d-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~-- 294 (635)
T PRK10426 220 TEVVQKKLDTMRNAGVKVNGIWA--Q-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA-- 294 (635)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--e-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC--
Confidence 46788999999999987665655 2 2432110 0 11457777778889999999999999988764311
Q ss_pred CChhhHHHhhhhcCCCCCC---------------CcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEE-Eec
Q 014902 124 GGKAQYVKWGKAAGLNLTS---------------DDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAW-ELM 187 (416)
Q Consensus 124 gg~~~y~~w~~~~G~~~~~---------------~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~w-el~ 187 (416)
-+.+.|..- .+.|.-+.+ .--=|+||+++++|++.++..+.. + .|-+| .=+
T Consensus 295 ~~~~~y~e~-~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~--------~----Gvdg~w~D~ 361 (635)
T PRK10426 295 SDGDLCEEA-AEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIG--------L----GCSGWMADF 361 (635)
T ss_pred CCCHHHHHH-HHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhh--------c----CCCEEeeeC
Confidence 122233221 111211000 011277999999998887654333 1 24444 558
Q ss_pred cCCCCCCC-----CChhH-----HHHHHHHHHHHhhhcCC-CcEEEe
Q 014902 188 NEPRCTSD-----PSGDT-----LQSWIQEMAVYVKSIDA-KHLVEI 223 (416)
Q Consensus 188 NEp~~~~~-----~~~~~-----~~~w~~~~~~~Ir~~dp-~~lV~~ 223 (416)
||+-.... ..+.. ..-|.+.....+++..+ .+++++
T Consensus 362 ~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~l 408 (635)
T PRK10426 362 GEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEILFF 408 (635)
T ss_pred CCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 89543211 11111 22355566677777766 244443
No 216
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=42.92 E-value=79 Score=32.05 Aligned_cols=66 Identities=17% Similarity=0.303 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCC-----Ccc---ccccCCCCC---ChHHHHHHHHHHHHH-HHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDG-----QWR---ALQTSPSVY---DEEVFKALDFVISEA-KKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~-----~~~---~~~~~~g~~---~~~~l~~lD~~l~~a-~~~Gi~vil~l~ 117 (416)
-..|++.|+.++++|.|+|-+-.+... .+. .++-.|.-+ .+..++.+.++|..+ +++||..|.+++
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 468999999999999999998554321 111 011111111 123467788888887 589999999986
No 217
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=42.88 E-value=42 Score=30.84 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCC---hHHHHHHHHHHHHHHHcCCEEEE
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYD---EEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~---~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
.+.+.+.++.+.++|+..+=+++||-..|.+-+ .+.+ .-.-..++..++.+.++||++-+
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~---~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~ 92 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPK---EEVDFLMELFRDVLRRILKELEKLGVRIRI 92 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCH---HHHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 367889999999999999999999866664311 1111 11224556667778889999864
No 218
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=42.49 E-value=35 Score=32.42 Aligned_cols=15 Identities=47% Similarity=0.866 Sum_probs=13.1
Q ss_pred CCcEEEEecCCccCC
Q 014902 302 RMPVLFTEFGVSAKD 316 (416)
Q Consensus 302 ~kPv~i~EfG~~~~~ 316 (416)
.|||++||+|+..-+
T Consensus 206 sKpIwftE~GcpavD 220 (299)
T PF13547_consen 206 SKPIWFTEYGCPAVD 220 (299)
T ss_pred CcceEEEecCCchhc
Confidence 799999999998754
No 219
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=42.48 E-value=1.2e+02 Score=28.71 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+.+...-+..|+.|++.+|--+|-. ..+|..|.--..+.|..+-..++++|+-++-.+-
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKP------RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm 117 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKP------RTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVM 117 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCC------CCCcccccccCHHHHHHHHHHHHHcCCeeEEEec
Confidence 468888889999999999999844421 1233333333446778888899999999986664
No 220
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=41.59 E-value=3.2e+02 Score=26.42 Aligned_cols=124 Identities=13% Similarity=0.164 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc---CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhh
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT---SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQ 128 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~---~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~ 128 (416)
.+.+.+.++.+++.|+.+==||. |..|..... ..-.+|++.+.....+++..++.|+++++.++..-. ...+.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~l--d~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~--~~~~~ 103 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHL--SSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL--QDHPR 103 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEE--eccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc--CCCHH
Confidence 67889999999999987655543 222321100 012466777777889999999999999987763311 11122
Q ss_pred HHHhhhhcCCCCC----------------CCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCC
Q 014902 129 YVKWGKAAGLNLT----------------SDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPR 191 (416)
Q Consensus 129 y~~w~~~~G~~~~----------------~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~ 191 (416)
|..-.. .|.-+. ..--=|+||++++.|.+.++..+.. .+ .-.-|.=+|||.
T Consensus 104 y~e~~~-~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~G---vdg~w~D~~E~~ 170 (317)
T cd06599 104 YKELKE-AGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLD--------LG---IDSTWNDNNEYE 170 (317)
T ss_pred HHHHHH-CCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhc--------CC---CcEEEecCCCCc
Confidence 322111 111000 0011257899999999888655443 11 122355589985
No 221
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=41.33 E-value=76 Score=31.15 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|+..||+..+. ++ .+...+.++.|++.|+.+.+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~--------------~e--~d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHC--------------TE--ADVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEecc--------------ch--HHHHHHHHHHHHHcCCeEEEEEE
Confidence 478999999999999994421 11 23467889999999999988775
No 222
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=40.08 E-value=48 Score=32.91 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
..++++.+.+.|+..||++...... ..+..-+.-.++.++.+...+..|+++|+++.+++.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~--~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPI--HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 3678999999999999996532100 0000112223667899999999999999999887753
No 223
>PRK01060 endonuclease IV; Provisional
Probab=39.74 E-value=2.1e+02 Score=26.71 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014902 54 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 112 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 112 (416)
.+++.++.++++|++.|=+|..+...| .+..++++. ++++-+.++++||.+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~-----~~~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQW-----KRKPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCC-----cCCCCCHHH---HHHHHHHHHHcCCCC
Confidence 478999999999999999976432212 122344433 455567788999985
No 224
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.25 E-value=48 Score=30.78 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|++.|=+++||-..|.+-. .+.+ ..+ +.|+..++...++||+|-+
T Consensus 35 ~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~---~Ev~-~Lm~L~~~~l~~~~~~~~~~~irvr~ 96 (233)
T PRK14833 35 KTLREITIWCANHKLECLTLYAFSTENWKRPK---SEVD-FLMKLLKKYLKDERSTYLENNIRFKA 96 (233)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhcCcCH---HHHH-HHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 57889999999999999999999866664311 1111 122 3444455677788998854
No 225
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=39.14 E-value=60 Score=30.44 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..|=+++||-..|.+-. .+.+ ..+ ..++..++...+.||++-+
T Consensus 45 ~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~---~EV~-~Lm~L~~~~l~~~~~~~~~~~iri~v 106 (249)
T PRK14834 45 EALRRVVRAAGELGIGYLTLFAFSSENWSRPA---SEVS-DLFGLLRLFIRRDLAELHRNGVRVRV 106 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeccccCCCH---HHHH-HHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 67889999999999999999999866664321 1111 112 3445556677889998854
No 226
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=38.94 E-value=1.9e+02 Score=30.11 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+|+.+-+.|.=.--. .+ +..+.+...++.+++.|++-|++++|.|+. .+-...++..++++.+.+++
T Consensus 104 ~~~~lHl~GL~SdGg--VH---sh~~hl~~l~~~a~~~g~~~v~vH~~~DGR--------D~~p~s~~~~~~~l~~~~~~ 170 (501)
T TIGR01307 104 NNGKLHLMGLVSDGG--VH---SHIDHLIALIELAAERGIEKVVLHAFTDGR--------DTAPKSAESYLEQLQAFLKE 170 (501)
T ss_pred cCCceEEEEeccCCC--Cc---chHHHHHHHHHHHHHcCCCeEEEEEecCCC--------CCCchhHHHHHHHHHHHHHH
Confidence 355566666543100 00 124678899999999999999999998773 12234568888888888888
Q ss_pred cCCEEEEecC
Q 014902 108 YKIRLILSLT 117 (416)
Q Consensus 108 ~Gi~vil~l~ 117 (416)
.|.--|.++.
T Consensus 171 ~~~~~iasv~ 180 (501)
T TIGR01307 171 IGNGRIATIS 180 (501)
T ss_pred hCCEEEEEEe
Confidence 7876777764
No 227
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=38.74 E-value=55 Score=31.25 Aligned_cols=61 Identities=21% Similarity=0.090 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
+++++.+.+.|++.|++..-... .. .+..-+.-.++.++.+.+++..|+++|+++.+.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~-~h-~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSL-KH-CTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCH-HH-HHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 46899999999999999652110 00 000112234788999999999999999999988864
No 228
>PLN02692 alpha-galactosidase
Probab=38.74 E-value=3.5e+02 Score=27.45 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEEEeeccchhhhhcCCCChhHHHHHHHHH-----HHcCCCEEEEeeecCCCccccc-cCCCC--CChHHH-HHHHHH
Q 014902 31 PFYVNGFNTYWLMVFAADQSTRGKVSELFHQA-----SSAGLTVCRTWAFNDGQWRALQ-TSPSV--YDEEVF-KALDFV 101 (416)
Q Consensus 31 ~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~-----~~~G~n~vRi~~~~~~~~~~~~-~~~g~--~~~~~l-~~lD~~ 101 (416)
+..+.|.|.|...... -+++.+.+..+.| +++|.+.|=| |..|.... .+.|. .|++-| ..|..+
T Consensus 54 ~tPpmGWnSW~~~~~~---i~E~~i~~~ad~~~~~gl~~~Gy~yv~i----DDgW~~~~rd~~G~~~~d~~kFP~G~k~l 126 (412)
T PLN02692 54 ITPPMGWNSWNHFSCK---IDEKMIKETADALVSTGLSKLGYTYVNI----DDCWAEIARDEKGNLVPKKSTFPSGIKAL 126 (412)
T ss_pred CCCcceEEchhhhCcc---cCHHHHHHHHHHHHhccchhcCcEEEEE----cCCcCCCCCCCCCCeeeChhhcCCcHHHH
Confidence 3447899976532222 3466777777765 5667777655 44453211 11121 233333 457889
Q ss_pred HHHHHHcCCEEEEecCC
Q 014902 102 ISEAKKYKIRLILSLTN 118 (416)
Q Consensus 102 l~~a~~~Gi~vil~l~~ 118 (416)
.+.+++.|||.=|....
T Consensus 127 adyiH~~GLKfGIy~d~ 143 (412)
T PLN02692 127 ADYVHSKGLKLGIYSDA 143 (412)
T ss_pred HHHHHHCCCceEEEecC
Confidence 99999999999887643
No 229
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=38.54 E-value=96 Score=33.06 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLI 113 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vi 113 (416)
+.++.+++.+++.|+..+|++... |+ ++.+...++.|+++|+.+.
T Consensus 97 dvv~~~v~~a~~~Gid~~rifd~l--------------nd--~~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 97 DVVERFVERAVKNGMDVFRVFDAM--------------ND--PRNLETALKAVRKVGAHAQ 141 (593)
T ss_pred HHHHHHHHHHHhcCCCEEEEeeeC--------------Cc--HHHHHHHHHHHHHcCCeEE
Confidence 567889999999999999996421 11 4566777888888888753
No 230
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=38.50 E-value=82 Score=29.58 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.+|+.... + -...+..+++.|+++|+.+.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~--------------s--~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHC--------------T--EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEech--------------h--hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 477899999999999995421 0 124567789999999999988874
No 231
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=38.34 E-value=71 Score=32.01 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHc--CCEEEEecC
Q 014902 54 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKY--KIRLILSLT 117 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~--Gi~vil~l~ 117 (416)
..++-++.++++|++.|-+|....+.-...+......-+...+.|..+.+.|+++ ||++.|...
T Consensus 116 ~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~ 181 (382)
T TIGR02631 116 KVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPK 181 (382)
T ss_pred HHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 4577789999999999988753211000000000001123456777888888886 588877655
No 232
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=37.89 E-value=1e+02 Score=32.82 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
.+.++.+++.+.+.|++.+|++... |+ .+.+...++.|+++|+.+..++
T Consensus 90 ddvv~~~v~~a~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i 138 (582)
T TIGR01108 90 DDVVERFVKKAVENGMDVFRIFDAL--------------ND--PRNLQAAIQAAKKHGAHAQGTI 138 (582)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEec--------------Cc--HHHHHHHHHHHHHcCCEEEEEE
Confidence 3567889999999999999996431 11 3567788889999999888765
No 233
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.57 E-value=1e+02 Score=24.98 Aligned_cols=43 Identities=26% Similarity=0.443 Sum_probs=29.0
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEE
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLI 113 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vi 113 (416)
..+.+.+.++.+.++|+.. +|.++ |..+ +++++.|+++||+++
T Consensus 64 ~~~~~~~~v~~~~~~g~~~--v~~~~-----------g~~~-------~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVKA--VWLQP-----------GAES-------EELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHHHHHHT-SE--EEE-T-----------TS---------HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHcCCCE--EEEEc-----------chHH-------HHHHHHHHHcCCEEE
Confidence 3578899999999999884 45542 3333 356789999999986
No 234
>PLN02808 alpha-galactosidase
Probab=37.54 E-value=4e+02 Score=26.79 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=51.9
Q ss_pred EEEEEEeeccchhhhhcCCCChhHHHHHHHHH-----HHcCCCEEEEeeecCCCcccc-ccCCCC--CChHHH-HHHHHH
Q 014902 31 PFYVNGFNTYWLMVFAADQSTRGKVSELFHQA-----SSAGLTVCRTWAFNDGQWRAL-QTSPSV--YDEEVF-KALDFV 101 (416)
Q Consensus 31 ~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~-----~~~G~n~vRi~~~~~~~~~~~-~~~~g~--~~~~~l-~~lD~~ 101 (416)
+..+.|.|.|...... -+++.+.+..+.| +++|.+.|=| |..|..- ..+.|. .|++-| ..|..+
T Consensus 30 ~tPpmGWnsW~~~~~~---i~e~~i~~~a~~mv~~Gl~~~Gy~yv~i----Dd~W~~~~rd~~G~~~~d~~rFP~G~~~l 102 (386)
T PLN02808 30 LTPQMGWNSWNHFQCN---INETLIKQTADAMVSSGLAALGYKYINL----DDCWAELKRDSQGNLVPKASTFPSGIKAL 102 (386)
T ss_pred CCCcceEEchHHHCCC---CCHHHHHHHHHHHHHcchHHhCCEEEEE----cCCcCCCCcCCCCCEeeChhhcCccHHHH
Confidence 3457899976433221 3567788888875 6777777766 4556322 112232 344444 468899
Q ss_pred HHHHHHcCCEEEEecCC
Q 014902 102 ISEAKKYKIRLILSLTN 118 (416)
Q Consensus 102 l~~a~~~Gi~vil~l~~ 118 (416)
.+.++++|||.=|....
T Consensus 103 ad~iH~~GlkfGiy~~~ 119 (386)
T PLN02808 103 ADYVHSKGLKLGIYSDA 119 (386)
T ss_pred HHHHHHCCCceEEEecC
Confidence 99999999999887653
No 235
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=36.88 E-value=95 Score=33.09 Aligned_cols=50 Identities=16% Similarity=0.321 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
...++.+++.+++.|++.+|++... |+ ++.+...++.|+++|+.+..++.
T Consensus 95 d~vv~~~v~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i~ 144 (592)
T PRK09282 95 DDVVEKFVEKAAENGIDIFRIFDAL--------------ND--VRNMEVAIKAAKKAGAHVQGTIS 144 (592)
T ss_pred chhhHHHHHHHHHCCCCEEEEEEec--------------Ch--HHHHHHHHHHHHHcCCEEEEEEE
Confidence 3567889999999999999996431 11 46778889999999999886663
No 236
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=36.88 E-value=4.4e+02 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=29.3
Q ss_pred hhhhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Q 014902 251 DFIRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYLRMPVLFTEF 310 (416)
Q Consensus 251 d~~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~~kPv~i~Ef 310 (416)
+|......-..||+.+|+|-..|.... ..+.++.|.+ .|++|+|.|=
T Consensus 158 ~~~~iv~a~~~dfvqlq~ny~d~~n~~------------~~~~l~~A~~-~~~gI~IMeP 204 (391)
T COG1453 158 VFKEIVDAYPWDFVQLQYNYIDQKNQA------------GTEGLKYAAS-KGLGIFIMEP 204 (391)
T ss_pred HHHHHHhcCCcceEEeeeeeeccchhc------------ccHHHHHHHh-CCCcEEEEee
Confidence 344444445599999999965542111 1233445666 7999999884
No 237
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=36.62 E-value=78 Score=30.74 Aligned_cols=93 Identities=14% Similarity=0.312 Sum_probs=51.8
Q ss_pred HHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCC-CHHHHHHHHHHHHHHHhcccccccccccCCC
Q 014902 101 VISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFS-HTTLKSYYKAHVKTVLNRVNTFTNLTYKNDP 179 (416)
Q Consensus 101 ~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~-~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p 179 (416)
.++.|+|+|++|+=++.-.|. ++. .|... +.. +++-...+.+-+-.|++. |+=|
T Consensus 47 widaAHrnGV~vLGTiife~~--~~~----~~~~~----------ll~~~~~g~~~~A~kLi~ia~~--------yGFD- 101 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWG--GGA----EWCEE----------LLEKDEDGSFPYADKLIEIAKY--------YGFD- 101 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE----H----HHHHH----------HT---TTS--HHHHHHHHHHHH--------HT---
T ss_pred hHHHHHhcCceEEEEEEecCC--chH----HHHHH----------HHcCCcccccHHHHHHHHHHHH--------cCCC-
Confidence 479999999999888764443 222 23221 222 333344556666777777 7544
Q ss_pred cEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 180 TIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 180 ~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
+|-|-=|-........+.+..|++++.+..++ .|...|.
T Consensus 102 ---Gw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 102 ---GWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp ---EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred ---ceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 55554444433212246789999999999999 8877664
No 238
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=36.52 E-value=3.4e+02 Score=24.89 Aligned_cols=55 Identities=4% Similarity=0.007 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCC
Q 014902 151 TLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAK 218 (416)
Q Consensus 151 ~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~ 218 (416)
+..+.+.+.++.++.. -++..-.++.|..|=+..... +..=..++...|+++++.
T Consensus 116 ~~~~~~~~~l~~l~~~--------A~~~gi~l~lE~~~~~~~~~~-----~l~t~~~~~~li~~v~~~ 170 (254)
T TIGR03234 116 EARATLVENLRYAADA--------LDRIGLTLLIEPINSFDMPGF-----FLTTTEQALAVIDDVGRE 170 (254)
T ss_pred HHHHHHHHHHHHHHHH--------HHhcCCEEEEEECCcccCCCC-----hhcCHHHHHHHHHHhCCC
Confidence 4455666677777765 344445677776553322110 111235666777776643
No 239
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=36.21 E-value=2.2e+02 Score=27.64 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCE-EEEeeecCCCccccccCCCCCChHH----------HHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTV-CRTWAFNDGQWRALQTSPSVYDEEV----------FKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~-vRi~~~~~~~~~~~~~~~g~~~~~~----------l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++.|+.|+++|+++ |=+ ++. ..+++. .+.+-+.++.++++||.+.+.+.
T Consensus 117 ~e~L~~l~~aG~~~~v~i-G~E------------S~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAV-GLE------------TANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HHHHHHHHHcCCCEEEEE-ecC------------cCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 57788899999873 433 111 122222 34455788999999999887765
No 240
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=36.03 E-value=1.2e+02 Score=28.71 Aligned_cols=58 Identities=5% Similarity=0.097 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChH------HHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEE------VFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~------~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
..++.-|+.++++|+.-|-=|. .+.--+|.|.+. .++.==++|..|++.||..+...+
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~NfP-------TvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf 158 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQNFP-------TVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVF 158 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE-S--------GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-
T ss_pred CcHHHHHHHHHHhCCceEEECC-------cceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeec
Confidence 4778999999999999876543 111112222111 122222688999999998865443
No 241
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=36.01 E-value=79 Score=30.78 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
++-|+.+.++|++-||++. +.+++...+.+-..|..|+++|+-|-+.+
T Consensus 124 ~e~l~~L~eAGLDEIRfHp-------------~~~~~~~~e~~i~~l~~A~~~g~dvG~Ei 171 (353)
T COG2108 124 EEALKALAEAGLDEIRFHP-------------PRPGSKSSEKYIENLKIAKKYGMDVGVEI 171 (353)
T ss_pred HHHHHHHHhCCCCeEEecC-------------CCccccccHHHHHHHHHHHHhCccceeec
Confidence 5678889999999999942 22334445556677888999999885544
No 242
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.92 E-value=62 Score=30.43 Aligned_cols=58 Identities=16% Similarity=0.327 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..+=+++||-..|.+-+ .+.+ ..+ +.++..++...++||++-+
T Consensus 49 ~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~---~EV~-~Lm~L~~~~l~~~~~~~~~~~irv~~ 110 (253)
T PRK14832 49 RTLKELLRCCKDWGIKALTAYAFSTENWQRPI---EEVD-FLMLLFERLLRRELAQMHREGVRISF 110 (253)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCH---HHHH-HHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 57889999999999999999999866664321 1111 112 3444556677889999854
No 243
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=35.41 E-value=1.1e+02 Score=35.35 Aligned_cols=64 Identities=11% Similarity=0.109 Sum_probs=43.6
Q ss_pred EEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEE
Q 014902 33 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL 112 (416)
Q Consensus 33 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v 112 (416)
.++|.|.. .+. +-....++..++.+++.|++++|++-.- | .++.|...++++++.|..+
T Consensus 610 l~Rg~n~v--gy~---~ypd~vv~~f~~~~~~~GidifrifD~l--------------N--~~~n~~~~~~~~~~~g~~~ 668 (1143)
T TIGR01235 610 LLRGANGV--GYT---NYPDNVVKYFVKQAAQGGIDIFRVFDSL--------------N--WVENMRVGMDAVAEAGKVV 668 (1143)
T ss_pred eecccccc--Ccc---CCCHHHHHHHHHHHHHcCCCEEEECccC--------------c--CHHHHHHHHHHHHHcCCEE
Confidence 37788862 111 1124678888999999999999995321 1 1566777788888888877
Q ss_pred EEecC
Q 014902 113 ILSLT 117 (416)
Q Consensus 113 il~l~ 117 (416)
-.++.
T Consensus 669 ~~~i~ 673 (1143)
T TIGR01235 669 EAAIC 673 (1143)
T ss_pred EEEEE
Confidence 66554
No 244
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.32 E-value=59 Score=32.29 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|+..||++...... -++..-+.-.++.++.+...++.|+++|+.+.+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~--~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDL--QIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHH--HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 578889999999999996532100 000001122367788999999999999999887764
No 245
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.02 E-value=48 Score=31.16 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..+=+++|+-..|.+-+.+-...=.-..+.|+..+....+.||+|-+
T Consensus 45 ~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~v 106 (253)
T PRK14836 45 RAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRF 106 (253)
T ss_pred HHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 57889999999999999999999866664322110000011234555666778889998854
No 246
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=34.97 E-value=1.4e+02 Score=27.30 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcC
Q 014902 58 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWD 121 (416)
Q Consensus 58 dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~ 121 (416)
..+.+.+.|.|.+-+-... | ..-+...+..|+++|+.+.++|.+.|+
T Consensus 72 e~~ma~~aGAd~~tV~g~A----------~-------~~TI~~~i~~A~~~~~~v~iDl~~~~~ 118 (217)
T COG0269 72 EARMAFEAGADWVTVLGAA----------D-------DATIKKAIKVAKEYGKEVQIDLIGVWD 118 (217)
T ss_pred HHHHHHHcCCCEEEEEecC----------C-------HHHHHHHHHHHHHcCCeEEEEeecCCC
Confidence 3455668999998883321 1 455678899999999999999998765
No 247
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.90 E-value=72 Score=31.52 Aligned_cols=61 Identities=20% Similarity=0.057 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
..+|++.+.+.|+..|.+++-.... -.+..-+.-.++.++.+.++++.|+++|++|.+.+.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~--h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASES--FSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHH--HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 3688899999999999986521100 001111233478899999999999999999976664
No 248
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=34.41 E-value=1.5e+02 Score=27.54 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=58.0
Q ss_pred ccCCCCCCcEEEeCCeEEECCeEEEEEEe--eccchhhhh-------cCCCChhHHHHHHHHHHHcCCCEEEEeeecCCC
Q 014902 9 VREDDDWQMVQKQGNQFVVNDQPFYVNGF--NTYWLMVFA-------ADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQ 79 (416)
Q Consensus 9 ~~~~~~~~fv~~~g~~f~~~G~~~~~~G~--N~~~~~~~~-------~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~ 79 (416)
..+-.....++++|.+++-..--+.+.|. |---+.+.. +-..+.+.+.+.|..+.+.|-.++|++..
T Consensus 9 GAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSG---- 84 (254)
T COG2875 9 GAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSG---- 84 (254)
T ss_pred ccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecC----
Confidence 34445667899999999888888888885 321111111 11235678888888999999999999532
Q ss_pred ccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 80 WRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 80 ~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
|+..+..+-+=+++.+++||-.-+
T Consensus 85 -----------DpsiYgA~~EQm~~L~~~gI~yev 108 (254)
T COG2875 85 -----------DPSIYGALAEQMRELEALGIPYEV 108 (254)
T ss_pred -----------ChhHHHHHHHHHHHHHHcCCCeEE
Confidence 233344444445666777775543
No 249
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=34.36 E-value=2.3e+02 Score=27.06 Aligned_cols=149 Identities=11% Similarity=0.170 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC--------CCcCcCCC
Q 014902 54 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT--------NNWDAYGG 125 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~--------~~w~~~gg 125 (416)
..+.++..+.+.++..+=| |.++ -.+..+.+..+- |..++++|.++|..|. ..|+.+--
T Consensus 31 l~d~~~~~i~~~~f~llVV----Dps~--~g~~~~~~~~ee-------lr~~~~gg~~pIAYlsIg~ae~yR~Ywd~~w~ 97 (300)
T COG2342 31 LQDAYINEILNSPFDLLVV----DPSY--CGPFNTPWTIEE-------LRTKADGGVKPIAYLSIGEAESYRFYWDKYWL 97 (300)
T ss_pred cccchHHHHhcCCCcEEEE----eccc--cCCCCCcCcHHH-------HHHHhcCCeeEEEEEechhhhhhhhHhhhhhh
Confidence 3467888999999988766 1111 112223344333 4677888988887663 11322100
Q ss_pred hhhHHHhhhhcCC--CCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC-CCCChhHHH
Q 014902 126 KAQYVKWGKAAGL--NLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT-SDPSGDTLQ 202 (416)
Q Consensus 126 ~~~y~~w~~~~G~--~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~-~~~~~~~~~ 202 (416)
. .-|.|.....- |......|| +|+-++..+.+++.+..- -|-|+ |-| .|-+|.-+=+-.-. .....+...
T Consensus 98 ~-~~p~wLg~edP~W~Gny~VkYW-~~eWkdii~~~l~rL~d~--GfdGv-yLD--~VD~y~Y~~~~~~~~~~~~~k~m~ 170 (300)
T COG2342 98 T-GRPDWLGEEDPEWPGNYAVKYW-EPEWKDIIRSYLDRLIDQ--GFDGV-YLD--VVDAYWYVEWNDRETGVNAAKKMV 170 (300)
T ss_pred c-CCcccccCCCCCCCCCceeecc-CHHHHHHHHHHHHHHHHc--cCceE-EEe--eechHHHHHHhcccccccHHHHHH
Confidence 0 01233321110 011234456 478888888888888775 11111 111 23333111111100 001135677
Q ss_pred HHHHHHHHHhhhcCCCcEEEe
Q 014902 203 SWIQEMAVYVKSIDAKHLVEI 223 (416)
Q Consensus 203 ~w~~~~~~~Ir~~dp~~lV~~ 223 (416)
+|+.+++.++|...|. ++.+
T Consensus 171 ~~i~~i~~~~ra~~~~-~~Vi 190 (300)
T COG2342 171 KFIAAIAEYARAANPL-FRVI 190 (300)
T ss_pred HHHHHHHHHHHhcCCc-EEEE
Confidence 8999999999999999 4444
No 250
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=34.25 E-value=93 Score=29.93 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccC------CCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTS------PSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~------~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++.++++.|+.+|..|+|++=+=.-.|..--.++.. .+..+ .|..+..+|..|++.||++|.-+.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~--~f~Di~~~iKkaKe~giY~IARiV 145 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVN--KFKDIEPVIKKAKENGIYAIARIV 145 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccc--cccccHHHHHHHHhcCeEEEEEEE
Confidence 467889999999999999987722111111111111 11122 266778999999999999986653
No 251
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=34.04 E-value=92 Score=28.43 Aligned_cols=70 Identities=20% Similarity=0.170 Sum_probs=42.3
Q ss_pred EEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEE----------------------EEeeecCCCccccccCCCCC
Q 014902 33 YVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVC----------------------RTWAFNDGQWRALQTSPSVY 90 (416)
Q Consensus 33 ~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~v----------------------Ri~~~~~~~~~~~~~~~g~~ 90 (416)
...|+|.|-.+.+.. ++..++..|+.+++.|+=.| |--+|-| ..-
T Consensus 89 ~a~GvnNhmGS~~T~---~~~~m~~vl~~l~~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rdvfLD----------~~~ 155 (213)
T PF04748_consen 89 GAVGVNNHMGSRFTS---DREAMRWVLEVLKERGLFFVDSRTTPRSVAPQVAKELGVPAARRDVFLD----------NDQ 155 (213)
T ss_dssp T-SEEEEEE-CCHHC----HHHHHHHHHHHHHTT-EEEE-S--TT-SHHHHHHHCT--EEE-SEETT----------ST-
T ss_pred CcEEEecCCCccccC---CHHHHHHHHHHHHHcCCEEEeCCCCcccHHHHHHHHcCCCEEeeceecC----------CCC
Confidence 457888876554432 45666667776666665444 3322211 112
Q ss_pred C-hHHHHHHHHHHHHHHHcCCEEEEe
Q 014902 91 D-EEVFKALDFVISEAKKYKIRLILS 115 (416)
Q Consensus 91 ~-~~~l~~lD~~l~~a~~~Gi~vil~ 115 (416)
+ +...+.|++++..|+++|.-|.|.
T Consensus 156 ~~~~I~~ql~~~~~~A~~~G~aI~Ig 181 (213)
T PF04748_consen 156 DEAAIRRQLDQAARIARKQGSAIAIG 181 (213)
T ss_dssp SHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHhhhhcCcEEEEE
Confidence 2 456689999999999999988764
No 252
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=34.01 E-value=1.1e+02 Score=31.43 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++.++.|+++|++.|-+ .+..+.-..+.. ..+ . ..+.+.+++..++++||.+.+++.
T Consensus 287 ~e~l~~l~~aG~~~v~i-GiES~s~~~L~~~~K~-~---~~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 287 YETLKVMKENGLRLLLV-GYESGDQQILKNIKKG-L---TVEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred HHHHHHHHHcCCCEEEE-cCCCCCHHHHHHhcCC-C---CHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45678888888875544 111110000000 001 1 134556788999999999887765
No 253
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.83 E-value=72 Score=29.82 Aligned_cols=58 Identities=10% Similarity=0.217 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..|=+++||-..|.+-+. +.+ ..+ +.+...+....+.||++-+
T Consensus 45 ~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~---Ev~-~lm~L~~~~l~~~~~~~~~~~iri~~ 106 (243)
T PRK14829 45 PVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPD---EVR-FLMGFSRDVIHRRREQMDEWGVRVRW 106 (243)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecchhhCCCHH---HHH-HHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 578899999999999999999998666643211 111 112 3444455667889999854
No 254
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.28 E-value=77 Score=31.68 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.||++..... . -++..-+.-.++.++.+...+..|+++|+.|.+++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd-~-h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSD-I-HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCH-H-HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 67888889999999998542110 0 001111222477899999999999999999988754
No 255
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=33.27 E-value=1.5e+02 Score=31.71 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccc--------------------ccc------C--CCCCChHHHHHHHHHH
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRA--------------------LQT------S--PSVYDEEVFKALDFVI 102 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~--------------------~~~------~--~g~~~~~~l~~lD~~l 102 (416)
+.+.+.+.++.|++.++|++-++...|..|+. ..| + .|-|++ +.+..++
T Consensus 276 s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~~pe~~ggfytq---d~~relv 352 (732)
T COG3525 276 STDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGYGPERMGGFYTQ---DDIRELV 352 (732)
T ss_pred CHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcccccCcccccCcccH---HHHHHHH
Confidence 46788999999999999999886655544410 001 1 133554 3456889
Q ss_pred HHHHHcCCEEEEecC
Q 014902 103 SEAKKYKIRLILSLT 117 (416)
Q Consensus 103 ~~a~~~Gi~vil~l~ 117 (416)
+-|.+++|.||..+.
T Consensus 353 ~yAsar~ItviPeiD 367 (732)
T COG3525 353 AYASARQITVIPEID 367 (732)
T ss_pred HHHhhcCceecCCcC
Confidence 999999999998875
No 256
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=33.12 E-value=1.1e+02 Score=30.91 Aligned_cols=89 Identities=15% Similarity=0.256 Sum_probs=62.4
Q ss_pred HHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEe
Q 014902 103 SEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIF 182 (416)
Q Consensus 103 ~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~ 182 (416)
..|++||++|+=++...|.. |+. .-..|..+.+..+.+.+.+.++++. ++=+
T Consensus 118 n~AHrHGV~vlGTFItEw~e-g~~---------------~c~~~La~~es~~~~~e~L~~l~~~--------fgFd---- 169 (526)
T KOG2331|consen 118 NTAHRHGVKVLGTFITEWDE-GKA---------------TCKEFLATEESVEMTVERLVELARF--------FGFD---- 169 (526)
T ss_pred chhhhcCceeeeeEEEEecc-chh---------------HHHHHHccchhHHHHHHHHHHHHHH--------hCCc----
Confidence 57999999999999877764 321 1123555666688888888888887 6544
Q ss_pred EEEe--ccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEE
Q 014902 183 AWEL--MNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVE 222 (416)
Q Consensus 183 ~wel--~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~ 222 (416)
+|-+ -|-.... .-..+..++..+.+.+++.-|+-+|.
T Consensus 170 GWLiNiEn~i~~~---~i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 GWLINIENKIDLA---KIPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred eEEEEeeeccChh---hCccHHHHHHHHHHHHhhcCCCceEE
Confidence 4543 3333322 12457889999999999999998885
No 257
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.87 E-value=87 Score=29.07 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+++++.+++.|+..||+......... +..-+.-.+..++.+-..+..|+++|+.+.+.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~--~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHS--RKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHH--HHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 68899999999999999542110000 0000111244688888999999999999998885
No 258
>PRK09989 hypothetical protein; Provisional
Probab=32.51 E-value=4e+02 Score=24.55 Aligned_cols=90 Identities=8% Similarity=0.030 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccc
Q 014902 94 VFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNL 173 (416)
Q Consensus 94 ~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~ 173 (416)
..+.++++++.|++.|.+.|.... .+.. . ........+...+.++.++..
T Consensus 83 ~~~~l~~~i~~A~~lg~~~v~v~~-g~~~-~---------------------~~~~~~~~~~~~~~l~~l~~~------- 132 (258)
T PRK09989 83 ARADIDLALEYALALNCEQVHVMA-GVVP-A---------------------GEDAERYRAVFIDNLRYAADR------- 132 (258)
T ss_pred HHHHHHHHHHHHHHhCcCEEEECc-cCCC-C---------------------CCCHHHHHHHHHHHHHHHHHH-------
Confidence 456677777777777776553221 1100 0 011133445556667777766
Q ss_pred cccCCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCc
Q 014902 174 TYKNDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKH 219 (416)
Q Consensus 174 ~y~~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~ 219 (416)
.++....++.|..|....... +..=..++...|+++++..
T Consensus 133 -a~~~gv~l~lE~l~~~~~~~~-----~~~~~~~~~~ll~~v~~~~ 172 (258)
T PRK09989 133 -FAPHGKRILVEALSPGVKPHY-----LFSSQYQALAIVEEVARDN 172 (258)
T ss_pred -HHhcCCEEEEEeCCCCCCCCC-----ccCCHHHHHHHHHHcCCCC
Confidence 455555677777775321110 0001245567778877544
No 259
>PLN02561 triosephosphate isomerase
Probab=32.47 E-value=4.3e+02 Score=24.84 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=32.7
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
...++++|++.+=+ .+++ ....|+|. =+.+..-+..|.++||.+|+|+-.
T Consensus 81 ~~mL~d~G~~~vii-GHSE--------RR~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE 130 (253)
T PLN02561 81 AEMLVNLGIPWVIL-GHSE--------RRALLGES-NEFVGDKVAYALSQGLKVIACVGE 130 (253)
T ss_pred HHHHHHcCCCEEEE-Cccc--------ccCccCCC-hHHHHHHHHHHHHCcCEEEEEcCC
Confidence 45678899998866 3332 11223332 234456678899999999999864
No 260
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=32.44 E-value=3.7e+02 Score=27.24 Aligned_cols=87 Identities=21% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH---------HHHHHHHHHHHHcCCE-EEEecCCCcCcCCC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF---------KALDFVISEAKKYKIR-LILSLTNNWDAYGG 125 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l---------~~lD~~l~~a~~~Gi~-vil~l~~~w~~~gg 125 (416)
.+-|+.++++|+| |+-..- | .+|++.+ +.....++.+++.|+. +-+||.-
T Consensus 137 ~e~~~~l~~~GvN--RiSlGV-------Q----sf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIy------- 196 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGV-------Q----SFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIY------- 196 (416)
T ss_pred HHHHHHHHHcCCC--EEEecc-------c----cCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeec-------
Confidence 5679999999999 882211 1 1233332 2334678888998885 4477751
Q ss_pred hhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEEeccCCCCC
Q 014902 126 KAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWELMNEPRCT 193 (416)
Q Consensus 126 ~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~wel~NEp~~~ 193 (416)
|.|. ...+.+++-++.+++- + -+.|-.+.|.-||...
T Consensus 197 -----------glP~----------QT~~~~~~~l~~a~~l---------~-pdhis~y~L~~~p~t~ 233 (416)
T COG0635 197 -----------GLPG----------QTLESLKEDLEQALEL---------G-PDHLSLYSLAIEPGTK 233 (416)
T ss_pred -----------CCCC----------CCHHHHHHHHHHHHhC---------C-CCEEEEeeeecCCCch
Confidence 1211 1244556666666663 4 3478889999999865
No 261
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.11 E-value=78 Score=29.72 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..|=+++|+-..|.+-+.+-...=+-.-..|+.+++.+.+.|++|-+
T Consensus 53 ~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~v 114 (251)
T PRK14830 53 DTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNV 114 (251)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 57889999999999999999999865554322110000001113555666677788998854
No 262
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=31.73 E-value=91 Score=29.53 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 57 ELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 57 ~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
++++.+.+.|++.||+..-... .. .+...+.-.++.++.+.+++..|+++|+.|.++.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd-~~-~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWD-LH-VTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCH-HH-HHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 6788899999999999532100 00 0111222236788999999999999999998754
No 263
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.44 E-value=78 Score=30.50 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+..|=+++||-..|.+-.. +. ...+ +.+...++...+.||++-+
T Consensus 98 ~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~---EV-~~Lm~L~~~~l~~~~~~~~~~~irir~ 159 (296)
T PRK14827 98 AVVIDIACGAIELGIKWLSLYAFSTENWKRSPE---EV-RFLMGFNRDVVRRRRDNLNKMGVRIRW 159 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecchhhcCCHH---HH-HHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 567888999999999999999998666643211 11 1112 3344445667889999854
No 264
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.32 E-value=4e+02 Score=24.18 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
....++.-++.+++.|+..+|++....... .+..-+.-.++.++.+..++..|+++|+.+.+.+.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~--~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLH--IRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHH--HHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHH--HHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 346677778888899999999965321100 00011222357788999999999999999977664
No 265
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=31.06 E-value=1.7e+02 Score=27.32 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=32.1
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
...++++|++.+=+ .+++- .-.++|. -+.+.+-+..|.++||.+|+|+-.
T Consensus 77 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-GHSER--------RQYFGET-DEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHHHHHTTESEEEE-SCHHH--------HHHST-B-HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhhCCEEEe-ccccc--------cCccccc-cHHHHHHHHHHHHCCCEEEEEecc
Confidence 56788999998866 22210 0112221 245667788999999999999974
No 266
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=30.37 E-value=65 Score=29.65 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHH----HHHHcCCEEEEecCC
Q 014902 54 KVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVIS----EAKKYKIRLILSLTN 118 (416)
Q Consensus 54 ~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~----~a~~~Gi~vil~l~~ 118 (416)
+-.+||..|+..|+..+=..+|. |-|-..-+..++.+++++. .|.+.||++-+++--
T Consensus 12 r~~eDlekMa~sGI~~Vit~Ahd--------P~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv 72 (254)
T COG1099 12 RGFEDLEKMALSGIREVITLAHD--------PYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV 72 (254)
T ss_pred ccHHHHHHHHHhChhhhhhcccC--------CCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence 34689999999999988665542 2233344666788888875 599999999888753
No 267
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=30.05 E-value=4.5e+02 Score=24.39 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 115 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~ 115 (416)
....++.-+.+++.|+.+.=+..-....++ +.......-++.++.+.++++.|++.|...|..
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~-~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~ 113 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFP-FGSRDPATRERALEIMKKAIRLAQDLGIRTIQL 113 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcC-CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 445566666777888876544210000000 000001112457889999999999999999863
No 268
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=29.90 E-value=1.4e+02 Score=30.76 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.++..++.+.+.|++.+|++... |+ ++.+...++.|+++|+.+..++.
T Consensus 95 Dvv~~fv~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~ak~~G~~v~~~i~ 143 (467)
T PRK14041 95 DVVELFVKKVAEYGLDIIRIFDAL--------------ND--IRNLEKSIEVAKKHGAHVQGAIS 143 (467)
T ss_pred hhhHHHHHHHHHCCcCEEEEEEeC--------------CH--HHHHHHHHHHHHHCCCEEEEEEE
Confidence 456777999999999999996431 11 57788889999999999886663
No 269
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=29.74 E-value=4.8e+02 Score=29.31 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 92 EEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 92 ~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+..++.|..+|+.|+++||+||-.++
T Consensus 804 ~~~~~~l~~~i~~~~~~~~~~ig~~~ 829 (912)
T TIGR02171 804 NENMNSLKAFIDETAKKGVKVIGTIF 829 (912)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 34578999999999999999998876
No 270
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=29.57 E-value=2.9e+02 Score=26.43 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=47.9
Q ss_pred cEeEEEeccCCCCCCCCC----hhHHHHHHHHHHHHhhhc-CCCcEEEeccc-cccCCCCCCCcCCCcCccccccc--c-
Q 014902 180 TIFAWELMNEPRCTSDPS----GDTLQSWIQEMAVYVKSI-DAKHLVEIGLE-GFYGPSAPDRAKFNPNSYATQVG--T- 250 (416)
Q Consensus 180 ~I~~wel~NEp~~~~~~~----~~~~~~w~~~~~~~Ir~~-dp~~lV~~g~~-g~~~~~~~~~~~~np~~~~~~~g--~- 250 (416)
.|-++.|+-|.+...... .-.+.+-++.+++.+|++ .|...||.+.. .-|.. ..| ..| .
T Consensus 19 gVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~~~kitYAADWsEY~~-------~~p-----~dg~gd~ 86 (299)
T PF13547_consen 19 GVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILGPGTKITYAADWSEYFG-------YQP-----ADGSGDV 86 (299)
T ss_pred CCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhCCCceEEEeccCHHhcC-------cCC-----CCCCCcc
Confidence 578899999998754221 113456678889999975 58888887631 00110 001 011 0
Q ss_pred hh--hhhhCCCCCcEEEEeecCC
Q 014902 251 DF--IRNHQTLGVDFASVHIYAD 271 (416)
Q Consensus 251 d~--~~~~~~~~iD~~s~H~Y~~ 271 (416)
-| ....+.++|||+++..|..
T Consensus 87 ~f~LDpLWa~~~IDfIGID~Y~P 109 (299)
T PF13547_consen 87 YFHLDPLWADPNIDFIGIDNYFP 109 (299)
T ss_pred cccCcccccCCcCCEEEeecccc
Confidence 01 1123568999999999954
No 271
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=29.36 E-value=88 Score=30.45 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHH----HHHH---HHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK----ALDF---VISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~----~lD~---~l~~a~~~Gi~vil 114 (416)
+.+.+.++.+.++|+.++=+++||-..|.+-+. +.+ ..|+ .+.. +...+.++||+|-+
T Consensus 50 ~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~---EV~-~Lm~L~~~~l~~~~~~~~~l~~~~irirv 114 (322)
T PTZ00349 50 KALIQIIEICIKLKIKILSVFSFSLLNYNRSPE---EIH-FLFYLNLLILINEDFFFKFIKDNKIKIKI 114 (322)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHH---HHH-HHHHHHHHHHHHhhhhHHHHHHCCCEEEE
Confidence 678899999999999999999998666643211 111 1122 1222 24667899999854
No 272
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=29.30 E-value=1.1e+02 Score=28.98 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|+..|+++.-.... . .+..-+.-.++.++.+...+..|+++|+.+.+.+.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~-~-~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~ 135 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASET-F-SQKNINCSIAESLERFEPVAELAKAAGLRVRGYVS 135 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHH-H-HHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 578999999999999996532110 0 00011222367888999999999999999988775
No 273
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=29.22 E-value=57 Score=22.42 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=14.8
Q ss_pred HHHHHHHhhhcCCCcEEEec
Q 014902 205 IQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 205 ~~~~~~~Ir~~dp~~lV~~g 224 (416)
+.++.+.|+++||+..|++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEE
Confidence 46788999999999999874
No 274
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=28.92 E-value=70 Score=29.40 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH----HHHHHHHHHHH--HcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF----KALDFVISEAK--KYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l----~~lD~~l~~a~--~~Gi~vil 114 (416)
+.+.+.++.+.++|++.|=+++||-..|.+-. .+. ...+ ..++..++... ++|++|-+
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~---~EV-~~Lm~l~~~~l~~~~~~~~~~~~~irvr~ 88 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPK---EEV-DALMDLFERYLRELIDELNFHKNGIRVRV 88 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-H---HHH-HHHHHHHHHHHHHHHHHHH--HTTEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCH---HHH-HHHHHHHHHHHHHHhhhcchhhcCeeEEE
Confidence 56788999999999999999999865564311 111 1122 44555555565 79999864
No 275
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.11 E-value=1.2e+02 Score=30.06 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.|+.|+++|+|-|-+-+ ....-..+..-....+ .+...+.++.+++.|+. +.++|.
T Consensus 108 ~e~l~~l~~~G~~rvslGv-QS~~~~~L~~l~R~~s---~~~~~~a~~~l~~~g~~~v~~dli 166 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGM-QSAAPHVLAVLDRTHT---PGRAVAAAREARAAGFEHVNLDLI 166 (375)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5788999999999555511 1000000000000111 34455778899999998 878875
No 276
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=27.41 E-value=4.3e+02 Score=23.21 Aligned_cols=93 Identities=13% Similarity=0.258 Sum_probs=52.5
Q ss_pred HHHHHHHHc--CCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccccccccC
Q 014902 100 FVISEAKKY--KIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYKN 177 (416)
Q Consensus 100 ~~l~~a~~~--Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~ 177 (416)
..+..++++ |++|++.+.. |..... .....+++.++.|.+-+..++++ |+=
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg-~~~~~~------------------~~~~~~~~~~~~f~~~~~~~v~~--------~~~ 105 (210)
T cd00598 53 GALEELASKKPGLKVLISIGG-WTDSSP------------------FTLASDPASRAAFANSLVSFLKT--------YGF 105 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcC-CCCCCC------------------chhhcCHHHHHHHHHHHHHHHHH--------cCC
Confidence 344555555 9999999863 221000 01346777888888888888887 554
Q ss_pred CCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhcCCCcEEEec
Q 014902 178 DPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSIDAKHLVEIG 224 (416)
Q Consensus 178 ~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~dp~~lV~~g 224 (416)
+---+-||-...... ...+.+..+++++...+++. +-++++.
T Consensus 106 DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a 147 (210)
T cd00598 106 DGVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIA 147 (210)
T ss_pred CceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEE
Confidence 444444553222110 11355667777776666543 4456654
No 277
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=27.38 E-value=1.1e+02 Score=30.12 Aligned_cols=58 Identities=17% Similarity=0.055 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.|+++|+|.|-+- +.... +.+...-|. ....+.+.+.++.+++.|+. +.++|.
T Consensus 100 ~e~l~~l~~~Gv~risiG-vqS~~-~~~l~~lgR--~~~~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-VQSFR-DDKLLFLGR--QHSAKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-cccCC-hHHHHHhCC--CCCHHHHHHHHHHHHHcCCCeEEEecc
Confidence 577999999999955551 11000 000000011 01255666788999999996 667765
No 278
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.28 E-value=1.6e+02 Score=30.22 Aligned_cols=58 Identities=10% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCC-EEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKI-RLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi-~vil~l~ 117 (416)
++.++.|+++|+|.|-+-+ ....-..+. .-+. ....+.+.+.++.+++.|+ .+.++|.
T Consensus 151 ~e~l~~l~~aG~~risiGv-qS~~~~~L~-~l~r--~~~~~~~~~ai~~l~~~G~~~v~~dli 209 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGV-QDFDPEVQK-AVNR--IQPFEFTFALVEAARELGFTSINIDLI 209 (453)
T ss_pred HHHHHHHHHcCCCEEEECC-CCCCHHHHH-HhCC--CCCHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5789999999999666611 100000000 0011 0124456678899999999 6767765
No 279
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.24 E-value=1.4e+02 Score=30.10 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHH---------HHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV---------FKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~---------l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.|+.++++|+|-|=+- . | .++++. .+...+.++.+++.|+. +.++|.
T Consensus 115 ~e~l~~l~~~GvnrislG-v--------Q----S~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI 173 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLG-V--------Q----AFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLI 173 (400)
T ss_pred HHHHHHHHHCCCCEEEEE-c--------c----cCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 577999999999944441 1 1 122222 33455778899999998 778876
No 280
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=27.20 E-value=1.6e+02 Score=27.19 Aligned_cols=66 Identities=15% Similarity=0.087 Sum_probs=43.2
Q ss_pred EEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE
Q 014902 32 FYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR 111 (416)
Q Consensus 32 ~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~ 111 (416)
++++|-|+.|.. .+.+.+++|++.++++|+.-|=+-.. ...|..| +..+.+++++|. ||-
T Consensus 58 IRPRgGdFvY~~------~E~~iM~~DI~~~~~lG~~GVV~G~l---------t~dg~iD---~~~le~Li~aA~--gL~ 117 (241)
T COG3142 58 IRPRGGDFVYSD------DELEIMLEDIRLARELGVQGVVLGAL---------TADGNID---MPRLEKLIEAAG--GLG 117 (241)
T ss_pred EecCCCCcccCh------HHHHHHHHHHHHHHHcCCCcEEEeee---------cCCCccC---HHHHHHHHHHcc--CCc
Confidence 345666654421 23467899999999999998866322 2457777 566677787776 444
Q ss_pred EEEecCCC
Q 014902 112 LILSLTNN 119 (416)
Q Consensus 112 vil~l~~~ 119 (416)
| |||-.
T Consensus 118 v--TFHrA 123 (241)
T COG3142 118 V--TFHRA 123 (241)
T ss_pred e--eeehh
Confidence 3 55543
No 281
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=26.89 E-value=1.4e+02 Score=29.70 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHH---------HHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV---------FKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~---------l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.++++|+|-|-+-+ | .++++. .+...+.++.+++.|+. +.++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv---------Q----S~~~~~L~~l~R~~~~~~~~~ai~~~~~~g~~~v~~Dli 161 (370)
T PRK06294 103 ESYIRALALTGINRISIGV---------Q----TFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLI 161 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc---------c----cCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 5779999999999555511 1 122222 33445678899999996 778775
No 282
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=26.67 E-value=3.7e+02 Score=29.66 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcC---cCC---
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWD---AYG--- 124 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~---~~g--- 124 (416)
+...+++..+.++++|+..==+|. |..|.. .-.+-.+|+..+..+-.+++..+++|+|+++.+..+-. .|+
T Consensus 309 nls~~~dvv~~~~~agiPld~~~~--DiDyMd-~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~ 385 (805)
T KOG1065|consen 309 NLSVVRDVVENYRAAGIPLDVIVI--DIDYMD-GYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYD 385 (805)
T ss_pred cHHHHHHHHHHHHHcCCCcceeee--ehhhhh-cccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhh
Confidence 456788889999999998443443 222210 00112355666666778899999999999998862110 011
Q ss_pred -ChhhHHHhhhh-cCCC------CCCCcCc--CCCHHHHHHHHHHHHHHHhcccccccccccCC-CcEeEEEeccCCCCC
Q 014902 125 -GKAQYVKWGKA-AGLN------LTSDDEF--FSHTTLKSYYKAHVKTVLNRVNTFTNLTYKND-PTIFAWELMNEPRCT 193 (416)
Q Consensus 125 -g~~~y~~w~~~-~G~~------~~~~~~~--~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~-p~I~~wel~NEp~~~ 193 (416)
|+.. .-|... .|.+ .+....| |+||+++.++.+-++ | +.+. |.=-.|.-+|||...
T Consensus 386 ~g~~~-~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~----~--------fh~~vp~dg~wiDmnE~snf 452 (805)
T KOG1065|consen 386 RGVAK-DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELK----R--------FHDEVPFDGFWIDMNEPSNF 452 (805)
T ss_pred hhhhh-ceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHH----h--------hcccCCccceEEECCCcccC
Confidence 1100 000000 1111 0112222 678888888877765 4 5543 433459999999543
No 283
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=26.52 E-value=3.1e+02 Score=25.24 Aligned_cols=66 Identities=20% Similarity=0.086 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCcccccc-CCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQT-SPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~-~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
.+.+++.++.++++|+.++-+..... +..-.+ .+..-.+...+.+..+.+.|+++|+++-+..+.+
T Consensus 83 ~~~~~~~i~~a~~lg~~~vv~~~g~~--~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~ 149 (274)
T COG1082 83 LEELKRAIELAKELGAKVVVVHPGLG--AGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHH 149 (274)
T ss_pred HHHHHHHHHHHHHcCCCeEEeecccC--CcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCC
Confidence 34566788899999999887743210 100010 1111125678999999999999999998876433
No 284
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=26.51 E-value=1.2e+02 Score=29.02 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCEEEEeee-cCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAF-NDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~-~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
.++++.+.+.|++.|-++.- |+.. .+..-+.-.++.++.+.++++.|+++|++|.+.+.
T Consensus 77 ~~die~A~~~g~~~v~i~~s~S~~~---~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 77 KEDLKLVKEMGLKETGILMSVSDYH---IFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHH---HHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47788888899998877431 1110 01111233478899999999999999999988774
No 285
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.46 E-value=1.1e+02 Score=28.88 Aligned_cols=58 Identities=19% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHHHHHHHcC----CCEEEEeee-cCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 56 SELFHQASSAG----LTVCRTWAF-NDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 56 ~~dl~~~~~~G----~n~vRi~~~-~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
.++++.+.+.| ++.||++.. ++. ..+..-+.-.++.++.+..++..|+++|+++.+.+
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 134 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDI---HLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA 134 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee
Confidence 46677777777 999999642 111 00111122235678888899999999999987654
No 286
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=26.21 E-value=1.3e+02 Score=30.72 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHH---------HHHHHHHHHHHHcC-CEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVF---------KALDFVISEAKKYK-IRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l---------~~lD~~l~~a~~~G-i~vil~l~ 117 (416)
++.|+.|+++|+|-|-+- + | .++++.+ +.+.+.++.++++| +.+.++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiG-V--------Q----Sf~d~vLk~lgR~~~~~~~~~~i~~l~~~g~~~v~~DlI 221 (449)
T PRK09058 163 DEKADAALDAGANRFSIG-V--------Q----SFNTQVRRRAGRKDDREEVLARLEELVARDRAAVVCDLI 221 (449)
T ss_pred HHHHHHHHHcCCCEEEec-C--------C----cCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 577999999999955441 1 1 1223333 33446788889999 78888886
No 287
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=26.15 E-value=1.1e+02 Score=30.10 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred HHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCC
Q 014902 62 ASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLT 141 (416)
Q Consensus 62 ~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~ 141 (416)
+.+.|+..||| +||.+.. .-+.+..+++.|+++|+-+=|-.+ .|+.+... ....|.
T Consensus 97 a~~~G~~~iRI-------------NPGNig~-~~~~v~~vv~~ak~~~ipIRIGvN-----~GSL~~~~--~~~yg~--- 152 (360)
T PRK00366 97 AAEAGADALRI-------------NPGNIGK-RDERVREVVEAAKDYGIPIRIGVN-----AGSLEKDL--LEKYGE--- 152 (360)
T ss_pred HHHhCCCEEEE-------------CCCCCCc-hHHHHHHHHHHHHHCCCCEEEecC-----CccChHHH--HHHcCC---
Confidence 34789999999 5777732 236788999999999998877654 24443211 111121
Q ss_pred CCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 142 SDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
.+-..+.+...++++.+-+.
T Consensus 153 -----~t~eamveSAl~~~~~le~~ 172 (360)
T PRK00366 153 -----PTPEALVESALRHAKILEEL 172 (360)
T ss_pred -----CCHHHHHHHHHHHHHHHHHC
Confidence 12245677777777666554
No 288
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=26.04 E-value=1.3e+02 Score=25.01 Aligned_cols=28 Identities=39% Similarity=0.675 Sum_probs=19.4
Q ss_pred HHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHH
Q 014902 61 QASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEA 105 (416)
Q Consensus 61 ~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a 105 (416)
.|.+.|+.++|+| |++.++.++.+++..
T Consensus 89 ~L~~~G~~VLRf~-----------------N~ev~~n~~~vl~~I 116 (129)
T COG2852 89 FLESQGFTVLRFW-----------------NDEVLQNIDRVLEEI 116 (129)
T ss_pred HHHhCCceEEEec-----------------cHHHHhHHHHHHHHH
Confidence 4558999999995 455666666666543
No 289
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=26.03 E-value=4.1e+02 Score=26.30 Aligned_cols=82 Identities=11% Similarity=0.165 Sum_probs=54.6
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcC-------CCEEEEeeec---CCCccccccC---CCCCC-hH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAG-------LTVCRTWAFN---DGQWRALQTS---PSVYD-EE 93 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G-------~n~vRi~~~~---~~~~~~~~~~---~g~~~-~~ 93 (416)
+.+.+.+.|-..- .+++.+.+.-+.++++| +.++|...+- ...|..+... .|.++ ++
T Consensus 51 d~rllvI~GPCSI---------ed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~ 121 (349)
T PRK09261 51 DDRLLVVVGPCSI---------HDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIND 121 (349)
T ss_pred CCCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHH
Confidence 5666777787642 23455555555555555 4689996542 1345544322 25677 89
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 94 VFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 94 ~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
+|..+.+++-...+.||.++-.+.+
T Consensus 122 GL~~~R~ll~~~~e~GlpvatE~ld 146 (349)
T PRK09261 122 GLRIARKLLLDINELGLPAATEFLD 146 (349)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEecc
Confidence 9999999988899999999877764
No 290
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=25.64 E-value=4.6e+02 Score=25.90 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 115 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~ 115 (416)
..+-..++.+-++|..+|=+.++- + +....++++.+-+++++|+++||-+++-
T Consensus 146 ~~l~~sVedAlrLGAdAV~~tvy~-G---------s~~E~~ml~~l~~i~~ea~~~GlPlv~~ 198 (348)
T PRK09250 146 QALTASVEDALRLGAVAVGATIYF-G---------SEESRRQIEEISEAFEEAHELGLATVLW 198 (348)
T ss_pred ccceecHHHHHHCCCCEEEEEEec-C---------CHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 344456777889999999886542 0 1233578999999999999999999873
No 291
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=25.52 E-value=1.7e+02 Score=30.63 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHH---------HHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV---------FKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~---------l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++.|+.|+++|+|.|=+ .. | .++++. .+..-+.+..++++|+++.++|.
T Consensus 206 ~e~L~~L~~~G~~rVsl-GV--------Q----S~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM 263 (522)
T TIGR01211 206 EEHIDRMLKLGATRVEL-GV--------Q----TIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIM 263 (522)
T ss_pred HHHHHHHHHcCCCEEEE-EC--------c----cCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 57899999999984443 11 1 122333 34445678899999999988886
No 292
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=25.19 E-value=2.5e+02 Score=26.17 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+.+.|+.++++|++.+-+|......|. +..+++ +.++.+-+.++++||.+.+
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~-----~~~~~~---~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWK-----GVRLSE---ETAEKFKEALKENNIDVSV 63 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCC-----CCCCCH---HHHHHHHHHHHHcCCCEEE
Confidence 568899999999999999764321110 112333 3456666778889988643
No 293
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=25.13 E-value=1.2e+02 Score=29.91 Aligned_cols=58 Identities=7% Similarity=-0.046 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.|+++|+|.|=+ ......-..+..-....+ .+.+.+.++.++++|+. +.++|.
T Consensus 103 ~e~l~~lk~~G~nrisi-GvQS~~d~vL~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI 161 (353)
T PRK05904 103 QSQINLLKKNKVNRISL-GVQSMNNNILKQLNRTHT---IQDSKEAINLLHKNGIYNISCDFL 161 (353)
T ss_pred HHHHHHHHHcCCCEEEE-ecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 57899999999995444 111000000000000122 34556788999999987 767765
No 294
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.00 E-value=1.7e+02 Score=27.12 Aligned_cols=49 Identities=8% Similarity=0.052 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
.++.++.+++.|++.+=++.. | + +..+.++++++.++++||++++.++.
T Consensus 90 ~~~~i~~~~~~Gadgvii~dl-----------p--~--e~~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDL-----------L--I--DYPDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCC-----------C--C--CcHHHHHHHHHHHHHcCCCEEEEECC
Confidence 355677777888887755210 1 1 12356778999999999999998873
No 295
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.76 E-value=1.5e+02 Score=28.01 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEE
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil 114 (416)
..+-..++.+-++|.+.|=+.++- + +....++|+.+-++.++|+++||-+++
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v~~-G---------s~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQVFI-G---------SEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEEec-C---------CHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 344556777889999999886652 0 123357899999999999999999886
No 296
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.72 E-value=2.4e+02 Score=26.37 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=47.3
Q ss_pred EEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCc--------------ccccc---CCCCCC-h
Q 014902 31 PFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQW--------------RALQT---SPSVYD-E 92 (416)
Q Consensus 31 ~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~--------------~~~~~---~~g~~~-~ 92 (416)
--+.+|+|.|-.+.+. .+.+.++..++.+++-|+=.+ +++.- +.+.- -+++-+ +
T Consensus 119 v~~~~GlnNhmGs~~t---sn~~aM~~~m~~Lk~r~l~fl-----Ds~T~a~S~a~~iAk~~gVp~~~rdvfLD~e~~~~ 190 (250)
T COG2861 119 VPDAVGLNNHMGSRFT---SNEDAMEKLMEALKERGLYFL-----DSGTIANSLAGKIAKEIGVPVIKRDVFLDDEDTEA 190 (250)
T ss_pred Cccceeehhhhhhhhc---CcHHHHHHHHHHHHHCCeEEE-----cccccccchhhhhHhhcCCceeeeeeeecCcCCHH
Confidence 3467899987655544 346778888888888775322 11110 00000 011223 4
Q ss_pred HHHHHHHHHHHHHHHcCCEEEE
Q 014902 93 EVFKALDFVISEAKKYKIRLIL 114 (416)
Q Consensus 93 ~~l~~lD~~l~~a~~~Gi~vil 114 (416)
+....||.++..|+++|.-+-|
T Consensus 191 ~V~kql~~~~~~Ark~G~ai~I 212 (250)
T COG2861 191 AVLKQLDAAEKLARKNGSAIGI 212 (250)
T ss_pred HHHHHHHHHHHHHHhcCceEEe
Confidence 6779999999999999998865
No 297
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.49 E-value=2.4e+02 Score=25.10 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 58 LFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 58 dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
+++.+.++|.+.|=++... . -..+.++++.|+++|+++++.+.+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~--------------~---~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA--------------D---DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC--------------C---HHHHHHHHHHHHHcCCEEEEEecC
Confidence 5788899999988764321 1 134567899999999999998764
No 298
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.30 E-value=1.4e+02 Score=30.48 Aligned_cols=58 Identities=9% Similarity=0.105 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.|+++|+|.|-+ .+.... +.+...-+.. ...+.+.+.++.+++.|+. |-++|.
T Consensus 152 ~e~l~~L~~~G~~rvsi-GvQS~~-~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli 210 (453)
T PRK13347 152 AEMLQALAALGFNRASF-GVQDFD-PQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI 210 (453)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCC-HHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE
Confidence 68899999999995544 111000 0000000110 1245566788999999996 666664
No 299
>PRK01060 endonuclease IV; Provisional
Probab=24.28 E-value=2.6e+02 Score=26.12 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHH--HHcCCEEEEecC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEA--KKYKIRLILSLT 117 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a--~~~Gi~vil~l~ 117 (416)
.+.+++.++.++++|+..|.++.-.. .+..-.++.++.+-+.+..+ .+.|+++.|.-+
T Consensus 88 ~~~~~~~i~~A~~lga~~vv~h~G~~--------~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~ 147 (281)
T PRK01060 88 RDFLIQEIERCAALGAKLLVFHPGSH--------LGDIDEEDCLARIAESLNEALDKTQGVTIVLENT 147 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcC--------CCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 35688899999999999999854210 00111123566555555544 457877665543
No 300
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=24.15 E-value=1.3e+02 Score=29.68 Aligned_cols=58 Identities=12% Similarity=0.007 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.++++|+|-|-+-+ .... +.....-|+- ...+.+.+.+..+++.|+. +-++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGv-QS~~-~~~L~~lgR~--~~~~~~~~ai~~lr~~g~~~v~iDli 156 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGV-QSFN-EDKLKFLGRI--HSQKQIIKAIENAKKAGFENISIDLI 156 (350)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCC-HHHHHHcCCC--CCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 5789999999999554411 1000 0001011211 1145556788999999996 557775
No 301
>PRK10658 putative alpha-glucosidase; Provisional
Probab=24.10 E-value=2.6e+02 Score=30.36 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccc-cccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHH
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRA-LQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYV 130 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~-~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~ 130 (416)
.+.+.+.++.+++.|+..==+ .+ |..|.. +.-..-.+|++.|-....+++..++.|+++++-+...-. -..+.|.
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i-~l-D~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~--~~s~~f~ 357 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVF-HF-DCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIA--QKSPLFK 357 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEE-EE-chhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcC--CCchHHH
Confidence 456788889999999874322 22 222211 000112345555656677899999999999987653210 0111121
Q ss_pred HhhhhcCC--------CC-------CCCcCcCCCHHHHHHHHHHHHHHHh
Q 014902 131 KWGKAAGL--------NL-------TSDDEFFSHTTLKSYYKAHVKTVLN 165 (416)
Q Consensus 131 ~w~~~~G~--------~~-------~~~~~~~~~~~~~~~~~~~v~~~v~ 165 (416)
. ....|. +. ...--=|+||+++++|.+.++.++.
T Consensus 358 e-~~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 358 E-GKEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD 406 (665)
T ss_pred H-HHHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh
Confidence 1 001111 00 0011126799999999999988775
No 302
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=24.04 E-value=2.2e+02 Score=25.73 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHH--HHHHHHHHHHHHHc
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEV--FKALDFVISEAKKY 108 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~--l~~lD~~l~~a~~~ 108 (416)
-..+....+.+.+.|+.++|+ .++.+..+.|.|+... ++....++++++++
T Consensus 46 nkvv~~la~~l~~~G~atlRf------NfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 46 NKVVQTLARALVKRGFATLRF------NFRGVGRSQGEFDNGIGELEDAAAALDWLQAR 98 (210)
T ss_pred CHHHHHHHHHHHhCCceEEee------cccccccccCcccCCcchHHHHHHHHHHHHhh
Confidence 367788888999999999999 2333444556665321 33444566676665
No 303
>PLN02429 triosephosphate isomerase
Probab=23.88 E-value=6.8e+02 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.7
Q ss_pred HHHHHHH----HHHcCCEEEEecCC
Q 014902 98 LDFVISE----AKKYKIRLILSLTN 118 (416)
Q Consensus 98 lD~~l~~----a~~~Gi~vil~l~~ 118 (416)
-|++|.. |.++||.+|+|+-.
T Consensus 165 td~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 165 KDEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred CHHHHHHHHHHHHHCcCEEEEEcCC
Confidence 3555665 99999999999964
No 304
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=23.79 E-value=1.6e+02 Score=30.55 Aligned_cols=58 Identities=9% Similarity=-0.003 Sum_probs=33.1
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCC-EEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKI-RLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi-~vil~l~ 117 (416)
++.|+.|+++|+| |+.+--+..-+.....-|. ....+.+.+.+..|+++|+ .+.++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR--~ht~e~v~~ai~~ar~~Gf~~In~DLI 327 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGR--HHTVEDIIEKFHLAREMGFDNINMDLI 327 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCC--CCCHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 5779999999999 5532111100000000011 1124556678899999999 6767775
No 305
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=23.69 E-value=2.1e+02 Score=25.91 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=32.5
Q ss_pred HHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 59 FHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 59 l~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
.+.++++|++.+=+ .+++ .++.|.. +.+-+..|.++||.+|+|.
T Consensus 74 ~~mLkd~G~~~vii-GHSE----------RRf~Etd---i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-NHSE----------RRMKLAD---IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEE-Cccc----------CCCCccH---HHHHHHHHHHCCCEEEEEE
Confidence 45678899998866 3332 1255544 6778899999999999998
No 306
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.58 E-value=2.8e+02 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHH----HHHHHHHHHHHcCCEEEEec
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFK----ALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~----~lD~~l~~a~~~Gi~vil~l 116 (416)
+.+++.++.++++|++.|.++... . +....++.++ .|.++++. ++|+++.|.-
T Consensus 84 ~~l~~~i~~A~~lGa~~vv~h~g~---~------~~~~~e~~~~~~~~~l~~l~~~--~~gv~l~lEn 140 (273)
T smart00518 84 ERLIDEIKRCEELGIKALVFHPGS---Y------LKQSKEEALNRIIESLNEVIDE--TKGVVILLET 140 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccc---c------cCCCHHHHHHHHHHHHHHHHhc--cCCcEEEEec
Confidence 457889999999999999985421 1 1111244444 44444442 5788776654
No 307
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.14 E-value=2e+02 Score=26.64 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+++.++.++++|++.+=+ .|. | ++.++++++.++++||++++-+.
T Consensus 93 ~~~fi~~~~~aG~~giii---pDl--------~-------~ee~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 93 LERFLRDAKEAGVDGLII---PDL--------P-------PEEAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred HHHHHHHHHHCCCcEEEE---CCC--------C-------HHHHHHHHHHHHHcCCcEEEEeC
Confidence 356677788888876644 111 1 34677888899999998887654
No 308
>PRK05660 HemN family oxidoreductase; Provisional
Probab=23.13 E-value=1.9e+02 Score=28.78 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEE-EEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRL-ILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~v-il~l~ 117 (416)
++.|+.|+++|+|-|-+- .....-..+. .-+.. ...+...+.++.+++.|+.. -++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiG-vqS~~~~~L~-~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli 165 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIG-VQSFSEEKLK-RLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLM 165 (378)
T ss_pred HHHHHHHHHcCCCEEEec-cCcCCHHHHH-HhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 578999999999955441 1100000000 00110 12445557788999999975 47765
No 309
>PTZ00445 p36-lilke protein; Provisional
Probab=23.09 E-value=2.2e+02 Score=26.04 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHcCCCEEEEeeecC-------CCccccccC--CCCCChHHHHHHHHHHHHHHHcCCEEEEecCC
Q 014902 51 TRGKVSELFHQASSAGLTVCRTWAFND-------GQWRALQTS--PSVYDEEVFKALDFVISEAKKYKIRLILSLTN 118 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi~~~~~-------~~~~~~~~~--~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~ 118 (416)
..+..+.-.+.+++.|+++|=+ -|.. ++|. .+. .-.+-...=..+..++.++.++||+|+|..+.
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~-D~DnTlI~~HsgG~~--~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIAS-DFDLTMITKHSGGYI--DPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEe-cchhhhhhhhccccc--CCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEcc
Confidence 3567778889999999999865 1110 1111 110 00010112234567899999999999877653
No 310
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.99 E-value=1.9e+02 Score=30.01 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
++.++.|+++|++.|=+ .+..+.-..+..-....+ .+...+.+..++++||.+.+++.
T Consensus 287 ~ell~~l~~aG~~~v~i-GiES~~~~~L~~~~K~~t---~~~~~~ai~~l~~~Gi~~~~~~I 344 (497)
T TIGR02026 287 ADILHLYRRAGLVHISL-GTEAAAQATLDHFRKGTT---TSTNKEAIRLLRQHNILSEAQFI 344 (497)
T ss_pred HHHHHHHHHhCCcEEEE-ccccCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCcEEEEEE
Confidence 45678888888875544 111110000000000111 34556788999999998876654
No 311
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=22.92 E-value=1.5e+02 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHH--HHHHHHHHHHcCCEEE
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKA--LDFVISEAKKYKIRLI 113 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~--lD~~l~~a~~~Gi~vi 113 (416)
+..+++||+.+++.|++.|=+ +.+ ..-|.. +-.+.+.++++||...
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt--l~~--------------~~EL~~l~Vp~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT--LLT--------------DHELARLGVPDLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE---S---------------HHHHHHTT-TTHHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE--eCc--------------HHHHHHcCCccHHHHHHHcCCEEE
Confidence 568899999999999999843 211 111222 2256799999999874
No 312
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=22.12 E-value=5.6e+02 Score=25.35 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCC-------EEEEeeec---CCCccccccCC---CCCC-hH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLT-------VCRTWAFN---DGQWRALQTSP---SVYD-EE 93 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n-------~vRi~~~~---~~~~~~~~~~~---g~~~-~~ 93 (416)
+.+.+.+.|-..- .+.+...+.-+.+++++.. ++|+...- ...|..+...| |.++ ++
T Consensus 51 d~rllvIvGPCSI---------hd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~ 121 (356)
T PRK12822 51 DPRLLVIIGPCSI---------HDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEK 121 (356)
T ss_pred CCCeEEEEcCCcC---------CCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHH
Confidence 4455666776641 3467777888888999988 59985531 12365553222 5566 78
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecCCC
Q 014902 94 VFKALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 94 ~l~~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
+|..+.+++....+.||.+.-.+.+.
T Consensus 122 GL~i~R~ll~~~~~~GlPvatE~ld~ 147 (356)
T PRK12822 122 GLRLARQLLLSINTLGLATATEFLDT 147 (356)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeeccc
Confidence 99999999999999999998877653
No 313
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.11 E-value=2.2e+02 Score=26.96 Aligned_cols=45 Identities=29% Similarity=0.471 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+++-++.+++.|++-+=+. |. | ++..+.++..|+++||.+|+-+.
T Consensus 108 ~e~F~~~~~~aGvdgviip---DL--------P-------~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIP---DL--------P-------YEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred HHHHHHHHHHcCCeEEEec---CC--------C-------HHHHHHHHHHHHHcCCCEEEEEC
Confidence 4567777888888877551 11 1 35567889999999999987664
No 314
>TIGR03586 PseI pseudaminic acid synthase.
Probab=22.09 E-value=3e+02 Score=26.97 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHHHHcCCCEEEEeeecCCC-----c-cccccCCCCCCh----HH-------HHHHHHHHHHHHHcCCEE
Q 014902 50 STRGKVSELFHQASSAGLTVCRTWAFNDGQ-----W-RALQTSPSVYDE----EV-------FKALDFVISEAKKYKIRL 112 (416)
Q Consensus 50 ~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~-----~-~~~~~~~g~~~~----~~-------l~~lD~~l~~a~~~Gi~v 112 (416)
++.+...+.++.+++.|.++|++=.|.... . ..+...++.|+. +. ++.+..+.+.|++.||.+
T Consensus 14 G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 14 GSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTI 93 (327)
T ss_pred ChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcE
Confidence 356888999999999999999994332110 0 001001112211 12 234457888999999999
Q ss_pred EEecCC
Q 014902 113 ILSLTN 118 (416)
Q Consensus 113 il~l~~ 118 (416)
+-+.++
T Consensus 94 ~stpfd 99 (327)
T TIGR03586 94 FSSPFD 99 (327)
T ss_pred EEccCC
Confidence 988874
No 315
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=21.79 E-value=3.6e+02 Score=26.62 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=36.1
Q ss_pred ChhHHHHHHHHHHHcC----CCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 51 TRGKVSELFHQASSAG----LTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G----~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
+.+.+++..+.++.++ .-.|++-.+++ +...+..|..-.-+.+..+.+..+++||.+.+--
T Consensus 262 s~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~-----~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~ 326 (347)
T PRK14453 262 SKEHAEAVVGLLRNRGSWEHLYHVNLIPYNS-----TDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRT 326 (347)
T ss_pred CHHHHHHHHHHHhhccccCCcceEEEecCCC-----CCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 4567788888888763 33455533332 2111111322234566778888899999987754
No 316
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=21.70 E-value=1.7e+02 Score=26.47 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCC-----CcCcCCCHHHHHHHHHHHHHHHhcc
Q 014902 98 LDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTS-----DDEFFSHTTLKSYYKAHVKTVLNRV 167 (416)
Q Consensus 98 lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~-----~~~~~~~~~~~~~~~~~v~~~v~R~ 167 (416)
-..+-....++||+||.++. |.. ...|.-|. .|+|... ....-.+++.++.|.+=++.+++|+
T Consensus 99 ~r~~g~~~q~~Gi~VIP~v~--W~~---~~s~~~~~--~gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~rl 166 (200)
T PF14386_consen 99 SRWLGAYWQSNGIKVIPNVS--WSD---KRSFDFCF--DGIPKGSIVAISTNGCINNKEDKKLFLDGLREMLKRL 166 (200)
T ss_pred HHHHHHHHHHCCCeEcceEE--ecC---cchHHHHH--hhcccCCEEEEEEecccCCHHHHHHHHHHHHHHHhcc
Confidence 34566788999999999996 653 22332232 2444322 1123456778899999999999993
No 317
>PRK09767 hypothetical protein; Provisional
Probab=21.59 E-value=1.2e+02 Score=24.90 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=12.5
Q ss_pred HHHHHcCCCEEEEee
Q 014902 60 HQASSAGLTVCRTWA 74 (416)
Q Consensus 60 ~~~~~~G~n~vRi~~ 74 (416)
+.+++.|..+||+|.
T Consensus 78 ~~L~~~G~~VlRf~n 92 (117)
T PRK09767 78 SWLESQGWTVLRFWN 92 (117)
T ss_pred HHHHHCCCEEEEEEH
Confidence 456899999999964
No 318
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=21.59 E-value=2.2e+02 Score=30.10 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=38.6
Q ss_pred ChhHHHHHHHHHHHcCCCEEEE--eeecCCCccccccCCC----CC-----ChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 51 TRGKVSELFHQASSAGLTVCRT--WAFNDGQWRALQTSPS----VY-----DEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 51 ~~~~~~~dl~~~~~~G~n~vRi--~~~~~~~~~~~~~~~g----~~-----~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
+.+..++.|+.|+++-+|.+-+ |... ...++-...+ .| .+-..+.+...|+.|+++||+++..-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~r--H~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYR--HHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SB--TTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccc--cCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 4578999999999999999999 3221 0011111111 11 12336778899999999999998753
No 319
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=21.52 E-value=1.4e+02 Score=27.90 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEe
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILS 115 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~ 115 (416)
.+.+++.+..+.++|+..+=+++|+...|.+-..+-...-.-..+.+++.+....+++|++-+.
T Consensus 46 ~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~~~~~l~~~~v~v~~i 109 (245)
T COG0020 46 AKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALREELKKLHKNGVRIRII 109 (245)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhcCeEEEEE
Confidence 4678999999999999999999998666632111000000112345566666677999998653
No 320
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.40 E-value=2e+02 Score=29.23 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHH---------HHHHHHHHcCCEEE-Eec
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALD---------FVISEAKKYKIRLI-LSL 116 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD---------~~l~~a~~~Gi~vi-l~l 116 (416)
++.|+.|+++|+|.|-+ .-..++++.++.+. +.++.++++|+.++ ++|
T Consensus 141 ~e~l~~l~~~G~~rvsl-------------GvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dl 198 (430)
T PRK08208 141 AEKLALLAARGVNRLSI-------------GVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDL 198 (430)
T ss_pred HHHHHHHHHcCCCEEEE-------------ecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEe
No 321
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=21.22 E-value=6.9e+02 Score=24.19 Aligned_cols=64 Identities=16% Similarity=0.331 Sum_probs=35.4
Q ss_pred cCcCCCHHHHHHHHHHHHHHHhccccccccccc-CCCcEeEEEeccCCCCCCCCChhHHHHHHHHHHHHhhhc
Q 014902 144 DEFFSHTTLKSYYKAHVKTVLNRVNTFTNLTYK-NDPTIFAWELMNEPRCTSDPSGDTLQSWIQEMAVYVKSI 215 (416)
Q Consensus 144 ~~~~~~~~~~~~~~~~v~~~v~R~N~~tg~~y~-~~p~I~~wel~NEp~~~~~~~~~~~~~w~~~~~~~Ir~~ 215 (416)
..||++|.+++++.+.++..+.+ .. .++.-+.+..--=|.-.....|+.+..-+.++++.|++.
T Consensus 155 ~~~~~~p~yi~a~~~~i~~~l~~--------~~~~~~~~llfSaHglP~~~~~~~GdpY~~~~~~t~~~i~~~ 219 (316)
T PF00762_consen 155 PSFYDHPAYIEALAERIREALER--------FPRGEPDHLLFSAHGLPQRYVEDKGDPYPAQCEETARLIAER 219 (316)
T ss_dssp ---TT-HHHHHHHHHHHHHHHTT--------S-HCCCEEEEEEEE--BHHHHTCCT-SHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHh--------cCCCCCCEEEEccCCCCccccccCCCChHHHHHHHHHHHHHH
Confidence 35889999999999999998888 31 112222233222222211112456788888888888654
No 322
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=21.08 E-value=2e+02 Score=28.80 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHc-CCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhH
Q 014902 53 GKVSELFHQASSA-GLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQY 129 (416)
Q Consensus 53 ~~~~~dl~~~~~~-G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y 129 (416)
..++-||+.+.++ -=|++-+.+.+.. .|-.++|+++ .|.++++.|+|+||.||-+=.-.|.-||+.+.+
T Consensus 183 ~~weIDL~~veal~DENT~AivviNP~-----NPcGnVys~~---HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfv 252 (447)
T KOG0259|consen 183 KDWEIDLDGVEALADENTVAIVVINPN-----NPCGNVYSED---HLKKIAETAKKLGIMVIADEVYGHTVFGDKPFV 252 (447)
T ss_pred ccceechHHHHHhhccCeeEEEEeCCC-----CCCcccccHH---HHHHHHHHHHHhCCeEEehhhcceeecCCCCcc
Confidence 4566666666543 3567666554321 2334578865 456889999999999998865445566776544
No 323
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=21.07 E-value=1.1e+03 Score=25.69 Aligned_cols=238 Identities=10% Similarity=0.126 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCcc-----ccccCCCCCChHHHHHHHHH-HHHHHHcCCEEEE--ecCCCcCcCC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWR-----ALQTSPSVYDEEVFKALDFV-ISEAKKYKIRLIL--SLTNNWDAYG 124 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~-----~~~~~~g~~~~~~l~~lD~~-l~~a~~~Gi~vil--~l~~~w~~~g 124 (416)
+.++.-|+.++++|+|+|=+=+|+|..-. .+-| ..+=+---+.+.++ -....+.|++|.. .+- .|+.-.
T Consensus 334 ~nl~~l~~ri~~~~~~~VyLqafadp~gdg~~~~lYFp--nr~lPmraDlfnrvawql~tR~~v~vyAWmpvl-~~~l~~ 410 (672)
T PRK14581 334 ENLDKLVQRISDLRVTHVFLQAFSDPKGDGNIRQVYFP--NRWIPMRQDLFNRVVWQLASRPDVEVYAWMPVL-AFDMDP 410 (672)
T ss_pred hhHHHHHHHHHhcCCCEEEEEeeeCCCCCCceeeEEec--CCcccHHHhhhhHHHHHHHhhhCceEEEeeehh-hccCCc
Confidence 45788899999999999988777653210 0011 11111122344455 3555677998853 111 011100
Q ss_pred ChhhHHHhhhhcCCCCCCCcCcC-----CCHHHHHHHHHHHHHHHhcccccccccccCCCcEeEEE--------------
Q 014902 125 GKAQYVKWGKAAGLNLTSDDEFF-----SHTTLKSYYKAHVKTVLNRVNTFTNLTYKNDPTIFAWE-------------- 185 (416)
Q Consensus 125 g~~~y~~w~~~~G~~~~~~~~~~-----~~~~~~~~~~~~v~~~v~R~N~~tg~~y~~~p~I~~we-------------- 185 (416)
..+.-..|... +.+.......| -+|++++..++.-+.++.. .++.|+-|.|+..+--+|
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~y~rlspf~~~~~~~i~~iy~DLa~~-~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~g 488 (672)
T PRK14581 411 SLPRITRIDPK-TGKTSIDPDQYRRLSPFNPEVRQRIIDIYRDMAYS-APIDGIIYHDDAVMSDFEDASPDAIRAYEKAG 488 (672)
T ss_pred ccchhhhcccc-cCccccCCCCccccCCCCHHHHHHHHHHHHHHHhc-CCCCeEEeccccccccccccCHHHHHHHHhcC
Confidence 11111111111 11101111122 2688888888888887775 578899999875433222
Q ss_pred eccCCCCCCCCChhHHHHH-----------HHHHHHHhhhcCCCcEEEeccccccCCCCCCCcCCCcC--cccccccchh
Q 014902 186 LMNEPRCTSDPSGDTLQSW-----------IQEMAVYVKSIDAKHLVEIGLEGFYGPSAPDRAKFNPN--SYATQVGTDF 252 (416)
Q Consensus 186 l~NEp~~~~~~~~~~~~~w-----------~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~np~--~~~~~~g~d~ 252 (416)
|-..+.... .+.+.+.+| ..++.+.+|...|..+.+... .|... ..+|. .|- .+++
T Consensus 489 l~~~~~~~~-~~~~~~~~w~~~k~~~l~~f~~~l~~~v~~~~~p~~~tarn--iya~~-----~l~p~~~~w~---aQ~l 557 (672)
T PRK14581 489 FPGSITTIR-QDPEMMQRWTRYKSKYLIDFTNELTREVRDIRGPQVKSARN--IFAMP-----ILEPESEAWF---AQNL 557 (672)
T ss_pred CCccHHhHh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceehhc--ccccc-----cCChhHHHHH---HhHH
Confidence 211111000 112334444 567788889888766666543 22211 11231 121 1222
Q ss_pred hhhhCCCCCcEEEEeecCCCcCCCCChhHHHHHHHHHHHHHHHHHHHhC-CCcEEEEecCCcc
Q 014902 253 IRNHQTLGVDFASVHIYADSWISQTISDAHLQFTKSWMEAHIEDAEKYL-RMPVLFTEFGVSA 314 (416)
Q Consensus 253 ~~~~~~~~iD~~s~H~Y~~~w~~~~~~~~~~~~~~~~i~~~~~~a~~~~-~kPv~i~EfG~~~ 314 (416)
.. ....-|+..+=.||..-... .....+|+.+.++..++.. ++-=+|-|.-...
T Consensus 558 ~~--~~~~yD~~a~mamp~me~~~------~~~~~~w~~~l~~~v~~~~~~~~k~vfelQ~~d 612 (672)
T PRK14581 558 DD--FLANYDWVAPMAMPLMEKVP------LSESNEWLAELVNKVAQRPGALEKTVFELQSKD 612 (672)
T ss_pred HH--HHhhcchhHHhhchhhhccc------cccHHHHHHHHHHHHHhcCCcccceEEEeeccc
Confidence 21 23466777766666321111 0123566666655544323 2223556776644
No 324
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=21.04 E-value=2.2e+02 Score=29.13 Aligned_cols=58 Identities=9% Similarity=0.057 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.|+++|+|.|-+- +....-..+..-....+ .+...+.++.+++.|+. +-++|.
T Consensus 151 ~e~l~~lk~~G~~risiG-vqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli 209 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFG-VQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI 209 (455)
T ss_pred HHHHHHHHHcCCCEEEEc-CCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE
Confidence 578999999999966551 11000000000001112 45566788999999996 556654
No 325
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=21.03 E-value=6e+02 Score=26.35 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=55.7
Q ss_pred CCeEEEEEEeeccchhhhhcCCCChhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHH
Q 014902 28 NDQPFYVNGFNTYWLMVFAADQSTRGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKK 107 (416)
Q Consensus 28 ~G~~~~~~G~N~~~~~~~~~~~~~~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~ 107 (416)
+|..+-+.|.-..+.-. +..+.+-..++.+++.|++-|=++.|.|+. .+....+++.|.++-+.+.+
T Consensus 107 ~~~~lHlmGl~S~GGVH-----Sh~~Hl~ali~~a~k~g~~kV~~H~f~DGR--------D~~P~s~~~~le~l~~~~~~ 173 (509)
T COG0696 107 NGSALHLMGLVSDGGVH-----SHIDHLLALIELAAKNGMKKVYLHAFLDGR--------DTAPRSALQYLEELEAKAKE 173 (509)
T ss_pred cCceEEEEecccCCccc-----chHHHHHHHHHHHHhcCCcEEEEEEecCCC--------CCCchhHHHHHHHHHHHhhc
Confidence 34455555554433211 124678899999999999988898888763 23345678999999999999
Q ss_pred cCCEEEEecC
Q 014902 108 YKIRLILSLT 117 (416)
Q Consensus 108 ~Gi~vil~l~ 117 (416)
+|.-.|-++.
T Consensus 174 ~g~~~iasi~ 183 (509)
T COG0696 174 YGNGRIASIS 183 (509)
T ss_pred cCceEEEEEe
Confidence 9988888885
No 326
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=20.90 E-value=2.4e+02 Score=26.05 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
...++..|..++++|+++|-| |++.- ..+ .+..-++|+.|.+.|++|.-.+
T Consensus 89 ~~kvdeyl~e~~~lGfe~iEI---S~G~i--------~m~---~eek~~lIe~a~d~Gf~vlsEv 139 (258)
T COG1809 89 QDKVDEYLNEAKELGFEAIEI---SNGTI--------PMS---TEEKCRLIERAVDEGFMVLSEV 139 (258)
T ss_pred cccHHHHHHHHHHcCccEEEe---cCCee--------ecc---hHHHHHHHHHHHhcccEEehhh
Confidence 356889999999999999998 43310 112 3445578999999999986433
No 327
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=20.87 E-value=2.5e+02 Score=26.11 Aligned_cols=61 Identities=10% Similarity=0.195 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 53 GKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 53 ~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+.+++-+.++..+|+.+|.+-++ |. .+++....-.....+.|...+++|.++.+.+-+.+-
T Consensus 96 eiM~KaI~LA~dLGIRtIQLAGY-DV---YYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiM 156 (287)
T COG3623 96 EIMEKAIQLAQDLGIRTIQLAGY-DV---YYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIM 156 (287)
T ss_pred HHHHHHHHHHHHhCceeEeeccc-ee---eeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeec
Confidence 45678888999999999999332 11 233332222234567889999999999998877665
No 328
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=20.59 E-value=5.4e+02 Score=24.59 Aligned_cols=102 Identities=16% Similarity=0.363 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCCCCcCcCCCHHHHHHHHHHHHHHHhcccccc
Q 014902 92 EEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLTSDDEFFSHTTLKSYYKAHVKTVLNRVNTFT 171 (416)
Q Consensus 92 ~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~~~~~~~~~~~~~~~~~~~v~~~v~R~N~~t 171 (416)
+..++.+..+. ++..|++|+|.+.. |.... . .+.. .-.+++.++.|.+-+..++++
T Consensus 58 ~~~~~~~~~~~--~~~~~~kvllsigg-~~~~~--~---~~~~-----------~~~~~~~r~~f~~~i~~~l~~----- 113 (343)
T PF00704_consen 58 SSGFKNLKELK--AKNPGVKVLLSIGG-WGMSS--D---GFSQ-----------LLSNPAKRQNFINNIVSFLKK----- 113 (343)
T ss_dssp HHHHHHHHHHH--HHHTT-EEEEEEEE-TTSSH--H---HHHH-----------HHHSHHHHHHHHHHHHHHHHH-----
T ss_pred ccchhHHHHHH--hhccCceEEEEecc-ccccc--c---cccc-----------ccccHHHHHHHHHhhhhhhcc-----
Confidence 34445554443 56669999999853 22111 0 1111 233667788888888888887
Q ss_pred cccccCCCcEeEEEe-ccCCCCC-CCCChhHHHHHHHHHHHHhhhcCC---CcEEEec
Q 014902 172 NLTYKNDPTIFAWEL-MNEPRCT-SDPSGDTLQSWIQEMAVYVKSIDA---KHLVEIG 224 (416)
Q Consensus 172 g~~y~~~p~I~~wel-~NEp~~~-~~~~~~~~~~w~~~~~~~Ir~~dp---~~lV~~g 224 (416)
|+=+ +.+| +..|... .......+..+++++...+++... +.+|++.
T Consensus 114 ---y~~D----GidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~ls~a 164 (343)
T PF00704_consen 114 ---YGFD----GIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSGKGYILSVA 164 (343)
T ss_dssp ---HT-S----EEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred ---cCcc----eeeeeeeeccccccchhhhhhhhhhhhhhhhhcccccccceeEEeec
Confidence 5533 3334 2222221 012246788899999888887543 6667665
No 329
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=20.58 E-value=2.1e+02 Score=28.36 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCE-EEEecC
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIR-LILSLT 117 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~-vil~l~ 117 (416)
++.++.++++|+|.|=+-+ .......+..-....+ .+...+.++.+++.|+. +.+++.
T Consensus 100 ~e~l~~l~~~G~~rvsiGv-qS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli 158 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGV-QTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDLI 158 (377)
T ss_pred HHHHHHHHHcCCCEEEEec-ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEeee
Confidence 5788999999999554411 1110000000001112 45666788999999987 456654
No 330
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=20.58 E-value=2.8e+02 Score=28.74 Aligned_cols=49 Identities=31% Similarity=0.329 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
.+.|+.|-++|+|++|+ -| ++|.+ +..-++++.+=+.+++.|..+-|-+
T Consensus 20 ~e~l~~li~aG~nV~Rl-Nf----------SHG~~-e~h~~~i~~vR~~~~~~~~~vaIl~ 68 (477)
T COG0469 20 EEMLEKLIEAGMNVVRL-NF----------SHGDH-EEHKKRIDNVREAAEKLGRPVAILL 68 (477)
T ss_pred HHHHHHHHHccCcEEEE-ec----------CCCCh-HHHHHHHHHHHHHHHHhCCceEEEE
Confidence 57889999999999999 23 34544 3345677777777888877665544
No 331
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=20.56 E-value=2.5e+02 Score=26.49 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEec
Q 014902 56 SELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 56 ~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l 116 (416)
++.++.|+++|++.+-+- + +.....+..-.+ ...++..-+.++.++++||.+...+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~-~-E~~~~~~~~i~~---~~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHN-L-DTSQEFYSNIIS---THTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEc-c-cCCHHHHhhccC---CCCHHHHHHHHHHHHHcCCEEEEeE
Confidence 678889999999977661 1 111000110001 1234555567889999999986554
No 332
>PLN02591 tryptophan synthase
Probab=20.55 E-value=3.5e+02 Score=25.36 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecC
Q 014902 55 VSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLT 117 (416)
Q Consensus 55 ~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~ 117 (416)
+++-++.++++|++-+=+ .|. | ++..+.++..|+++||.+|+...
T Consensus 95 ~~~F~~~~~~aGv~Gvii---pDL--------P-------~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVV---PDL--------P-------LEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred HHHHHHHHHHcCCCEEEe---CCC--------C-------HHHHHHHHHHHHHcCCeEEEEeC
Confidence 456677777777776654 111 1 45566778888888888877653
No 333
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=20.53 E-value=1.7e+02 Score=28.76 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=47.1
Q ss_pred HHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCcCcCCChhhHHHhhhhcCCCCC
Q 014902 62 ASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNNWDAYGGKAQYVKWGKAAGLNLT 141 (416)
Q Consensus 62 ~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~w~~~gg~~~y~~w~~~~G~~~~ 141 (416)
..+.|+..+|+ +||.+.. -+++..+++.|+++|+-+=|-.+ .|+.+. .-....|.
T Consensus 89 a~~~g~dkiRI-------------NPGNig~--~e~v~~vv~~ak~~~ipIRIGVN-----~GSL~~--~~~~kyg~--- 143 (346)
T TIGR00612 89 AMAKGVAKVRI-------------NPGNIGF--RERVRDVVEKARDHGKAMRIGVN-----HGSLER--RLLEKYGD--- 143 (346)
T ss_pred HHHhccCeEEE-------------CCCCCCC--HHHHHHHHHHHHHCCCCEEEecC-----CCCCcH--HHHHHcCC---
Confidence 34778899998 5676653 46788999999999998876654 244432 11111121
Q ss_pred CCcCcCCCHHHHHHHHHHHHHHHhc
Q 014902 142 SDDEFFSHTTLKSYYKAHVKTVLNR 166 (416)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~v~~~v~R 166 (416)
-+-..+.+...++++.+-+.
T Consensus 144 -----~t~eamveSAl~~v~~le~~ 163 (346)
T TIGR00612 144 -----ATAEAMVQSALEEAAILEKL 163 (346)
T ss_pred -----CCHHHHHHHHHHHHHHHHHC
Confidence 12334677777777666554
No 334
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.28 E-value=3.1e+02 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEec
Q 014902 95 FKALDFVISEAKKYKIRLILSL 116 (416)
Q Consensus 95 l~~lD~~l~~a~~~Gi~vil~l 116 (416)
++..+.++..|+++||.+|+-+
T Consensus 128 ~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred HHHHHHHHHHHHHcCCcEEEEe
Confidence 3556677777888888777533
No 335
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=20.26 E-value=3.5e+02 Score=25.30 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHcCCCEEEEeeecCCCccccccCCCCCChHHHHHHHHHHHHHHHcCCEEEEecCCC
Q 014902 52 RGKVSELFHQASSAGLTVCRTWAFNDGQWRALQTSPSVYDEEVFKALDFVISEAKKYKIRLILSLTNN 119 (416)
Q Consensus 52 ~~~~~~dl~~~~~~G~n~vRi~~~~~~~~~~~~~~~g~~~~~~l~~lD~~l~~a~~~Gi~vil~l~~~ 119 (416)
+..++.-+..+..+|..-|-+.+.. ++.......+-....+.|.+..+.+.+.||+++|...|+
T Consensus 84 r~~v~~a~~ya~aLg~~~vh~mag~----~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~ 147 (260)
T COG3622 84 RLGVALAIEYATALGCKQVHCLAGI----PPEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNL 147 (260)
T ss_pred HhHHHHHHHHHHHhCCCceeeeecC----CCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCC
Confidence 4567888888999998866553211 000001111223456788899999999999999998865
Done!