BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014903
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/239 (40%), Positives = 141/239 (58%), Gaps = 4/239 (1%)
Query: 118 EDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRH 177
+D+ H + SLE+LY G + KL+L++ ++ G G+K R
Sbjct: 12 KDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQ 71
Query: 178 LGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITF 237
+GP MIQ+ Q C+ C GTG+ I+ KDRC C G KV E+K+LEV VE GM++GQ+I F
Sbjct: 72 MGP-MIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVF 130
Query: 238 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQ 297
GEAD+APD + GD+VF++ ++ H FKR G+DL YE + L A+ G +FAL H+ G
Sbjct: 131 KGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDW 190
Query: 298 LLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALE 354
L + PGEV+ P K I +GMP+ + G L I FT++ P++ + + +K LE
Sbjct: 191 LKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGY-GNLIIKFTIKDPENHFTSEENLKKLE 248
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 211 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGED 270
G + E K+L + V+KG + G KITFP E D+ + + DIVFVL+ K H FKR G D
Sbjct: 44 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSD 103
Query: 271 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 330
+ Y +SL EALCG + LDGR + + +V++P + + EG+PL + P +
Sbjct: 104 VIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKR 161
Query: 331 GKLYIHFTVEFPDSLTPDQVKALEAILP 358
G L I F V FP+ + LE +LP
Sbjct: 162 GDLIIEFEVIFPERIPQTSRTVLEQVLP 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 211 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGED 270
G + E K+L + V+KG + G KITFP E D+ + + DIVFVL+ K H FKR G D
Sbjct: 37 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSD 96
Query: 271 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 330
+ Y +SL EALCG + LDGR + + +V++P + + EG+PL + P +
Sbjct: 97 VIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKR 154
Query: 331 GKLYIHFTVEFPDSLTPDQVKALEAILP 358
G L I F V FP+ + LE +LP
Sbjct: 155 GDLIIEFEVIFPERIPQTSRTVLEQVLP 182
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 2/148 (1%)
Query: 211 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGED 270
G + E K+L + V+KG + G KITFP E D+ + + DIVFVL+ K H FKR G D
Sbjct: 35 GKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSD 94
Query: 271 LFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMK 330
+ Y +SL EALCG + LDGR + + +V++P + + EG+PL + P +
Sbjct: 95 VIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKR 152
Query: 331 GKLYIHFTVEFPDSLTPDQVKALEAILP 358
G L I F V FP+ + LE +LP
Sbjct: 153 GDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 85/146 (58%), Gaps = 3/146 (2%)
Query: 213 KVVQEKKVLEVIVEKGMQNGQKITFPGEAD-EAPDTVTGDIVFVLQQKEHPKFKRKGEDL 271
KV E+ ++EV ++ G ++G K+T+ GE D E+P T GD+V ++Q K HP+F R L
Sbjct: 36 KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHL 95
Query: 272 FYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKG 331
+ T+ L AL GF +T LD R L I E+V P + K + EG P+ +P KG
Sbjct: 96 IXKVTIPLVRALTGFTCPVTTLDNRNLQIPIK--EIVNPKTRKIVPNEGXPIKNQPGQKG 153
Query: 332 KLYIHFTVEFPDSLTPDQVKALEAIL 357
L + F + FP SLTP+Q K ++ L
Sbjct: 154 DLILEFDICFPKSLTPEQKKLIKEAL 179
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 123 PLKVSLEDLYLGTSKKLSLSR 143
PL V+LE+LYLG KK+ ++R
Sbjct: 9 PLLVTLEELYLGKRKKIKVTR 29
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 59/69 (85%), Gaps = 1/69 (1%)
Query: 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDK-GGDPEKFKELAQAYEVLSDPEKREIY 70
T+ Y++LGVS +A+ ++LKK Y+KAA+K HPDK GD EKFKE+++A+E+L+DP+KREIY
Sbjct: 8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67
Query: 71 DQYGEDALK 79
DQYG +A +
Sbjct: 68 DQYGLEAAR 76
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 210 KGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 268
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 269 EDLFYEHTLSLTEALCGFQFALTHLDGRQL-LIKSNPGEVVKPDSYKAINEEGMPLYQRP 327
+DL Y LS E+L GF + +DGR L L + P V+P +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 328 FMKGKLYIHFTVEFPDSLTPDQVKALE 354
+G L + + V++P SL Q +A++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 210 KGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIV-FVLQQKEHPKFKRKG 268
KG EK +++ ++ G + G KIT+ + D P T + FV+Q+K HP FKR G
Sbjct: 27 KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDG 86
Query: 269 EDLFYEHTLSLTEALCGFQFALTHLDGRQL-LIKSNPGEVVKPDSYKAINEEGMPLYQRP 327
+DL Y LS E+L GF + +DGR L L + P V+P +GMP + P
Sbjct: 87 DDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNP 143
Query: 328 FMKGKLYIHFTVEFPDSLTPDQVKALE 354
+G L + + V++P SL Q +A++
Sbjct: 144 SQRGNLIVKYKVDYPISLNDAQKRAID 170
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 57/69 (82%), Gaps = 3/69 (4%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIY 70
YY+ LG+++ AS E++K+AY++ A++ HPDK +P EKFKE+A+AY+VLSDP KREI+
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 71 DQYGEDALK 79
D+YGE+ LK
Sbjct: 65 DRYGEEGLK 73
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 57/77 (74%), Gaps = 6/77 (7%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKRE 68
YYEIL V ++ASA+D+KKAY++ A++ HPDK D +KFKE+A+AYEVLSD KRE
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 69 IYDQYGEDALKEGMGGG 85
IYD+YG + L G G G
Sbjct: 64 IYDRYGREGLT-GTGTG 79
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
Query: 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIY 70
T YY++LGV NA+ E+LKKAY+K A+K HPDK + EKFK+++QAYEVLSD +KRE+Y
Sbjct: 6 TTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELY 65
Query: 71 DQYGE 75
D+ GE
Sbjct: 66 DKGGE 70
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 53/72 (73%), Gaps = 4/72 (5%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREI 69
YYEILGVSK A +++KAYK+ A+K HPD+ GD E KFKE+ +AYEVL+D +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 70 YDQYGEDALKEG 81
YDQYG A ++G
Sbjct: 65 YDQYGHAAFEQG 76
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG---GDPEKFKELAQAYEVLSDPEKREIY 70
YYEILGVS+ AS EDLKKAY++ A+K HPDK G E FK + AY VLS+PEKR+ Y
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 71 DQYGE 75
DQ+G
Sbjct: 69 DQFGS 73
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIY 70
T YY++LGV +AS +LKKAY+K A+K HPDK D E+FK+++QAYEVLSD +KR+IY
Sbjct: 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67
Query: 71 DQYGED 76
DQ GE+
Sbjct: 68 DQGGEE 73
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREI 69
YYEILGVSK A +++KAYK+ A+K HPD+ GD E KFKE+ +AYEVL+D +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 70 YDQYGEDALKE 80
YDQYG A ++
Sbjct: 65 YDQYGHAAFEQ 75
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 4/71 (5%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREI 69
YYEILGVSK A +++KAYK+ A+K HPD+ GD E KFKE+ +AYEVL+D +KR
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 70 YDQYGEDALKE 80
YDQYG A ++
Sbjct: 65 YDQYGHAAFEQ 75
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 52/68 (76%), Gaps = 9/68 (13%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE-------KFKELAQAYEVLSDPEK 66
YYE+L V + AS+E +KKAY+K A+K HPDK +PE +FK++A+AYEVLSD +K
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDK--NPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 67 REIYDQYG 74
R+IYD+YG
Sbjct: 69 RDIYDRYG 76
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIY 70
YY+ILGV K+AS +KKA+ K A+K HPDK P+ KF+E+A+AYE LSD +R+ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 71 DQYGEDALKEGMG 83
D G A G G
Sbjct: 69 DTLGHSAFTSGKG 81
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 72.4 bits (176), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 5/76 (6%)
Query: 9 SNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSD 63
S YYE+LGV +AS ED+KKAY+K A++ HPDK D +KFK +++AYEVLSD
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 64 PEKREIYDQYGEDALK 79
+KR +YD+ G D+ +
Sbjct: 66 SKKRSLYDRAGCDSWR 81
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 71.6 bits (174), Expect = 8e-13, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 264 FKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323
FKR G+DL YE + L A+ G +FAL H+ G L + PGEV+ P K I +GMP+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 324 YQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGM-TDMELDEC 373
+ G L I FT++FP++ + + +K LE ILP R + + +DEC
Sbjct: 62 PKYGGY-GNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC 113
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 69.7 bits (169), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 49/68 (72%), Gaps = 4/68 (5%)
Query: 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-PE---KFKELAQAYEVLSDPEKREIY 70
Y +LG+ KNA+++D+KK+Y+K A+K HPDK D PE KFKE+ A+ +L+D KR IY
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 71 DQYGEDAL 78
D+YG L
Sbjct: 80 DKYGSLGL 87
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYD 71
Y +LGVS+ AS D+KKAYKK A + HPDK DP ++F ++++AYE+LS+ EKR YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
Query: 72 QYG 74
YG
Sbjct: 80 HYG 82
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEK---FKELAQAYEVLSDPEKREI 69
+Y +LGVSK AS+ ++++A+KK A+K HPDK +P F ++ +AYEVL D + R+
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 70 YDQYGEDALKEGMGG 84
YD+YGE L++ GG
Sbjct: 83 YDKYGEKGLEDNQGG 97
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 4/65 (6%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREI 69
YY+ILGV +NAS +++KKAY + A K HPD D EKF +LA+AYEVLSD KR+
Sbjct: 9 YYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQ 68
Query: 70 YDQYG 74
YD YG
Sbjct: 69 YDAYG 73
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEK---FKELAQAYEVLSDPEKREI 69
+Y +LGVSK AS+ ++++A+KK A+K HPDK +P F ++ +AYEVL D + R+
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 70 YDQYGEDALKEGMGG 84
YD+YGE L++ GG
Sbjct: 64 YDKYGEKGLEDNQGG 78
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIY 70
YY I+GV + +K AY++ A K HPD +P+ +FKE+A+A+EVLSD ++R Y
Sbjct: 7 YYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEY 66
Query: 71 DQ 72
DQ
Sbjct: 67 DQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPD--KGGDPE-KFKELAQAYEVLSDPEKREIY 70
YY ILGV + +K AY++ A K HPD K D E KFK+LA+A+EVL D ++R Y
Sbjct: 30 YYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89
Query: 71 DQYGEDALKEGMGGGAGAHD 90
DQ + G G H+
Sbjct: 90 DQLWQHRNDPGFGRQRQTHE 109
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 4 RAPKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-------PEKFKELAQ 56
R K+S YY+ILGV +NA +++ KAY+K A++ HPD + +KF ++A
Sbjct: 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Query: 57 AYEVLSDPEKREIYD 71
A EVLSDPE R+ +D
Sbjct: 434 AKEVLSDPEMRKKFD 448
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 4 RAPKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-------PEKFKELAQ 56
R K+S YY+ILGV +NA +++ KAY+K A++ HPD + +KF ++A
Sbjct: 374 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA 433
Query: 57 AYEVLSDPEKREIYD 71
A EVLSDPE R+ +D
Sbjct: 434 AKEVLSDPEXRKKFD 448
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 15/87 (17%)
Query: 4 RAPKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDK------GGDPE----KFKE 53
+ PKK +Y ILG +A+ DLK+ Y+K + HPDK G E KF E
Sbjct: 6 QMPKKD----WYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIE 61
Query: 54 LAQAYEVLSDPEKREIYD-QYGEDALK 79
+ QA+++L + E + YD Q ED L+
Sbjct: 62 IDQAWKILGNEETKREYDLQRCEDDLR 88
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 3 GRAPKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDK------GGDPE----KFK 52
G A +++ +Y ILG +A+ DLK+ Y+K + HPDK G E KF
Sbjct: 7 GMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFI 66
Query: 53 ELAQAYEVLSDPEKREIYD 71
E+ QA+++L + E ++ YD
Sbjct: 67 EIDQAWKILGNEETKKKYD 85
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPE 65
+ T Y++LGV A+ +K AY + HPD+ E+F ++QAY VL
Sbjct: 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74
Query: 66 KREIYDQ---YGEDALKEGMGGGAG 87
R YD+ ED G G +G
Sbjct: 75 LRRKYDRGLLSDEDLRGPGSGPSSG 99
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 14 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREI 69
YY +LG + +S E + +K A++ HPDK + E F++L +A E+L++ E R
Sbjct: 22 YYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRAR 81
Query: 70 YDQY 73
YD +
Sbjct: 82 YDHW 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 15 YEILGVSKNA-SAEDLKKAYKKAAIKNHPDKGGDPE-------KFKELAQAYEVLSDPEK 66
Y++L V++ + L KAY+ A K+HPD+ + E +F+ +A AYE L D E
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77
Query: 67 REIYDQY 73
+ YD Y
Sbjct: 78 KTNYDYY 84
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40
Small T Antigen Complexed With The Protein Phosphatase
2a Aalpha Subunit
Length = 174
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 16 EILGVSKNASAED--LKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEK 66
++LG+ ++A ++KAY K + HPDKGGD EK K++ Y+ + D K
Sbjct: 15 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVK 67
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T
Antigen
Length = 114
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 16 EILGVSKNASAED--LKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSD 63
++LG+ ++A ++KAY K + HPDKGGD EK K++ Y+ + D
Sbjct: 12 DLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 61
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDK---GGDPEKFKELAQAYEVL 61
N+ +++LGV AS +++ KAY+K A+ HPDK G + FK + A L
Sbjct: 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 8 KSNNTRYYEILGVSKNA-SAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEK 66
K N+ +IL +++N + + LK+ ++K + NHPDKGG P ++ +A + L EK
Sbjct: 10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFL---EK 66
Query: 67 REI 69
R I
Sbjct: 67 RGI 69
>pdb|3I83|A Chain A, Crystal Structure Of 2-dehydropantoate 2-reductase From
Methylococcus Capsulatus
pdb|3I83|B Chain B, Crystal Structure Of 2-dehydropantoate 2-reductase From
Methylococcus Capsulatus
Length = 320
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 18 LGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYE 59
+GV++ A E +AY + + N+P GG E+ K LA A+E
Sbjct: 130 IGVTRTAPGEIWHQAYGRLMLGNYP--GGVSERVKTLAAAFE 169
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 29 LKKAYKKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIY 70
L+K Y++ ++HPD E+ L QAY L DP +R Y
Sbjct: 35 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 29 LKKAYKKAAIKNHPDKGGD-PEKFKELAQAYEVLSDPEKREIY 70
L+K Y++ ++HPD E+ L QAY L DP +R Y
Sbjct: 27 LRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 30 KKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGE 75
K + +A I ++G DP KF AY VL DPE RE ++ E
Sbjct: 30 KCGFSRATIGLLGNQGVDPAKFA----AYNVLEDPELREGIKEFSE 71
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEK------FKELAQAYEVLSDPEKR 67
++ +G++ + E +KK Y+KA + HPDK G P + F EL A+ + ++
Sbjct: 52 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQK 111
Query: 68 EIY 70
+Y
Sbjct: 112 PLY 114
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 29 LKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG 84
+++AYK+ ++ HPDKGG +EL + K E+Y+ L+ +GG
Sbjct: 30 MQQAYKQQSLLLHPDKGGSHALMQELNSLWGTF----KTEVYN------LRMNLGG 75
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 2 FGRAPKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVL 61
FG N R I+ S+ + + +++ +KN+ K E F E ++ L
Sbjct: 112 FGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKNNAKKRKMFESFIESVPLFKSL 171
Query: 62 SDPEKREIYDQYGEDALKEG 81
E+ +I D GE K+G
Sbjct: 172 EMSERMKIVDVIGEKIYKDG 191
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEK------FKELAQAYEVLSDPEKR 67
++ +G + + E +KK Y+KA + HPDK G P + F EL A+ + ++
Sbjct: 39 WKPVGXADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQK 98
Query: 68 EIY 70
+Y
Sbjct: 99 PLY 101
>pdb|1C20|A Chain A, Solution Structure Of The Dna-Binding Domain From The
Dead Ringer Protein
Length = 128
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 49 EKFKELAQAYEVLSDPEKREIYD 71
E+FK++ Q YE+ DP+++E D
Sbjct: 6 EQFKQVRQLYEINDDPKRKEFLD 28
>pdb|2NPM|A Chain A, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein
In Complex With Peptide
pdb|2NPM|B Chain B, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein
In Complex With Peptide
Length = 260
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 19 GVSKNASAEDLKKAYKKAAIK------NHPDKGGDPEKFKELAQAYEVLSDP 64
G SK +SAED KAYK A + HP + G F YE+L++P
Sbjct: 165 GDSKQSSAEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVF--HYEILNEP 214
>pdb|2VRT|A Chain A, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|B Chain B, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|C Chain C, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
pdb|2VRT|D Chain D, Crystal Structure Of E. Coli Rnase E Possessing M1 Rna
Fragments - Catalytic Domain
Length = 509
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 171 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 204
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2VMK|A Chain A, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|B Chain B, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|C Chain C, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
pdb|2VMK|D Chain D, Crystal Structure Of E. Coli Rnase E Apoprotein -
Catalytic Domain
Length = 515
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 171 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 204
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 385 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 417
>pdb|2BX2|L Chain L, Catalytic Domain Of E. Coli Rnase E
pdb|2C0B|L Chain L, Catalytic Domain Of E. Coli Rnase E In Complex With 13-Mer
Rna
pdb|2C4R|L Chain L, Catalytic Domain Of E. Coli Rnase E
Length = 517
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 171 MKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD 204
+++S + L PS+ + H C C GTG T+ D +
Sbjct: 392 LEMSRQRLSPSLGESSHHVCPRCSGTG-TVRDNE 424
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEK------FKELAQAY 58
++ +G++ + E +KK Y+KA + HPDK G P + F EL A+
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAW 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,002,355
Number of Sequences: 62578
Number of extensions: 486760
Number of successful extensions: 1153
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 67
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)