Query 014903
Match_columns 416
No_of_seqs 352 out of 2613
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00037 DnaJ_C chaperone prot 100.0 5E-102 1E-106 787.2 36.8 398 4-416 20-421 (421)
2 COG0484 DnaJ DnaJ-class molecu 100.0 3.6E-96 8E-101 719.0 33.6 340 10-360 2-351 (371)
3 KOG0712 Molecular chaperone (D 100.0 3.1E-89 6.8E-94 661.4 24.9 335 10-357 2-337 (337)
4 PRK14296 chaperone protein Dna 100.0 2.9E-87 6.4E-92 672.6 34.3 338 11-359 3-361 (372)
5 PRK14288 chaperone protein Dna 100.0 5.8E-86 1.2E-90 663.0 32.0 336 11-359 2-345 (369)
6 PRK14298 chaperone protein Dna 100.0 5E-84 1.1E-88 650.2 33.9 341 8-359 1-351 (377)
7 PRK14286 chaperone protein Dna 100.0 8.8E-84 1.9E-88 647.8 32.9 339 11-359 3-357 (372)
8 PRK14277 chaperone protein Dna 100.0 1.2E-83 2.5E-88 650.3 33.6 344 8-359 1-365 (386)
9 PRK14276 chaperone protein Dna 100.0 1.6E-83 3.6E-88 647.9 33.7 338 11-358 3-355 (380)
10 PRK14287 chaperone protein Dna 100.0 2.2E-83 4.8E-88 644.7 33.9 339 11-359 3-348 (371)
11 PRK14278 chaperone protein Dna 100.0 3.4E-83 7.3E-88 644.9 34.6 340 12-359 3-350 (378)
12 PRK14280 chaperone protein Dna 100.0 3.2E-83 7E-88 645.0 34.2 338 11-358 3-352 (376)
13 PRK14297 chaperone protein Dna 100.0 2.2E-82 4.7E-87 640.2 34.1 342 11-360 3-359 (380)
14 PRK14282 chaperone protein Dna 100.0 5.3E-82 1.1E-86 635.1 34.8 342 11-360 3-364 (369)
15 PRK14285 chaperone protein Dna 100.0 7.4E-82 1.6E-86 632.4 32.9 338 11-361 2-355 (365)
16 PRK14279 chaperone protein Dna 100.0 1.2E-81 2.6E-86 635.9 33.0 334 11-359 8-378 (392)
17 PRK14281 chaperone protein Dna 100.0 1.9E-81 4.2E-86 635.9 32.7 342 11-359 2-372 (397)
18 PRK14284 chaperone protein Dna 100.0 5.9E-81 1.3E-85 631.5 33.6 336 12-358 1-365 (391)
19 TIGR02349 DnaJ_bact chaperone 100.0 1.8E-80 4E-85 621.9 33.1 339 13-359 1-353 (354)
20 PRK14295 chaperone protein Dna 100.0 4.5E-80 9.7E-85 623.9 34.3 336 7-359 4-372 (389)
21 PRK14301 chaperone protein Dna 100.0 2.7E-80 5.9E-85 622.8 32.0 336 11-359 3-350 (373)
22 PRK14294 chaperone protein Dna 100.0 4E-80 8.6E-85 620.9 32.3 337 11-359 3-350 (366)
23 PRK14290 chaperone protein Dna 100.0 3.3E-79 7.2E-84 614.0 33.3 342 12-361 3-358 (365)
24 PRK14283 chaperone protein Dna 100.0 4E-79 8.7E-84 616.0 33.4 337 8-358 1-355 (378)
25 PRK10767 chaperone protein Dna 100.0 7.3E-79 1.6E-83 613.3 33.6 334 11-359 3-348 (371)
26 PRK14300 chaperone protein Dna 100.0 1.4E-78 3E-83 610.5 33.0 336 12-358 3-351 (372)
27 PRK14291 chaperone protein Dna 100.0 2.2E-78 4.7E-83 611.1 33.4 339 11-360 2-371 (382)
28 PRK14293 chaperone protein Dna 100.0 3.1E-78 6.6E-83 608.8 32.7 343 11-359 2-354 (374)
29 PRK14289 chaperone protein Dna 100.0 1.9E-77 4.2E-82 605.6 33.7 345 8-359 1-364 (386)
30 PRK14292 chaperone protein Dna 100.0 3E-77 6.6E-82 601.6 33.3 338 12-358 2-347 (371)
31 PRK14299 chaperone protein Dna 100.0 2.1E-61 4.6E-66 471.1 24.6 263 11-358 3-285 (291)
32 PRK10266 curved DNA-binding pr 100.0 1.2E-59 2.7E-64 462.0 26.4 279 11-359 3-293 (306)
33 KOG0713 Molecular chaperone (D 100.0 1.1E-49 2.5E-54 381.1 9.8 305 10-347 14-328 (336)
34 TIGR03835 termin_org_DnaJ term 100.0 1E-42 2.2E-47 361.3 22.1 128 211-344 689-817 (871)
35 KOG0715 Molecular chaperone (D 100.0 8.4E-41 1.8E-45 323.9 11.5 241 13-281 44-288 (288)
36 KOG0714 Molecular chaperone (D 99.9 2.6E-26 5.7E-31 222.9 14.0 251 11-323 2-305 (306)
37 PF01556 CTDII: DnaJ C termina 99.9 6.8E-22 1.5E-26 156.8 7.4 81 270-352 1-81 (81)
38 PTZ00341 Ring-infected erythro 99.8 3E-21 6.5E-26 205.9 5.5 75 6-80 567-644 (1136)
39 KOG0716 Molecular chaperone (D 99.8 3.6E-21 7.8E-26 179.6 4.4 69 11-79 30-102 (279)
40 KOG0691 Molecular chaperone (D 99.8 5.2E-21 1.1E-25 184.4 2.8 89 8-101 1-93 (296)
41 KOG0718 Molecular chaperone (D 99.8 3.4E-20 7.3E-25 183.5 4.6 72 8-79 5-83 (546)
42 PHA03102 Small T antigen; Revi 99.8 4.2E-20 9.1E-25 162.0 4.4 84 12-101 5-90 (153)
43 COG2214 CbpA DnaJ-class molecu 99.8 4.2E-18 9E-23 158.1 12.0 67 8-74 2-73 (237)
44 KOG0624 dsRNA-activated protei 99.8 6.5E-19 1.4E-23 169.4 5.2 72 7-79 389-467 (504)
45 KOG0717 Molecular chaperone (D 99.7 6.5E-19 1.4E-23 174.5 4.0 69 11-79 7-80 (508)
46 KOG0719 Molecular chaperone (D 99.7 1.1E-18 2.4E-23 159.2 4.0 66 10-75 12-83 (264)
47 PF00226 DnaJ: DnaJ domain; I 99.7 2.7E-18 5.7E-23 129.8 3.4 59 13-71 1-64 (64)
48 COG0484 DnaJ DnaJ-class molecu 99.7 7.3E-16 1.6E-20 152.4 12.9 213 27-274 48-346 (371)
49 smart00271 DnaJ DnaJ molecular 99.7 1.5E-16 3.2E-21 118.6 5.8 55 12-66 1-60 (60)
50 KOG0550 Molecular chaperone (D 99.6 9.9E-17 2.1E-21 157.6 4.2 89 7-98 368-461 (486)
51 KOG0721 Molecular chaperone (D 99.6 3.6E-16 7.7E-21 141.8 5.0 68 10-77 97-168 (230)
52 cd06257 DnaJ DnaJ domain or J- 99.6 7E-16 1.5E-20 112.7 5.5 51 13-63 1-55 (55)
53 PRK10767 chaperone protein Dna 99.6 5.9E-15 1.3E-19 149.2 12.2 56 220-275 289-345 (371)
54 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.5 2.9E-14 6.3E-19 108.5 7.6 65 147-213 1-66 (66)
55 PTZ00100 DnaJ chaperone protei 99.5 1.1E-14 2.4E-19 121.5 5.6 57 5-62 59-115 (116)
56 PRK14288 chaperone protein Dna 99.5 3.1E-13 6.7E-18 136.4 13.9 118 143-273 155-340 (369)
57 PRK01356 hscB co-chaperone Hsc 99.5 4.4E-14 9.5E-19 126.7 5.1 61 12-72 2-71 (166)
58 KOG0722 Molecular chaperone (D 99.5 1.6E-14 3.5E-19 133.4 2.2 63 11-73 32-97 (329)
59 PRK05014 hscB co-chaperone Hsc 99.5 6.1E-14 1.3E-18 126.5 5.7 61 12-72 1-72 (171)
60 PHA02624 large T antigen; Prov 99.4 8.6E-14 1.9E-18 144.9 5.0 60 11-70 10-71 (647)
61 PRK14277 chaperone protein Dna 99.4 1.9E-12 4.1E-17 131.5 12.0 53 220-272 306-359 (386)
62 PRK03578 hscB co-chaperone Hsc 99.4 3.4E-13 7.3E-18 122.1 5.8 62 11-72 5-77 (176)
63 PRK00294 hscB co-chaperone Hsc 99.4 4E-13 8.7E-18 121.1 6.0 63 10-72 2-75 (173)
64 PRK14282 chaperone protein Dna 99.4 1.9E-12 4.1E-17 130.8 10.8 56 220-275 304-360 (369)
65 PRK14294 chaperone protein Dna 99.3 4.1E-12 8.8E-17 128.3 10.0 57 220-276 291-348 (366)
66 PRK14290 chaperone protein Dna 99.3 3.7E-12 8E-17 128.5 8.9 56 220-275 297-353 (365)
67 KOG0720 Molecular chaperone (D 99.3 1E-12 2.2E-17 130.9 3.9 64 10-73 233-299 (490)
68 PRK14285 chaperone protein Dna 99.3 9.4E-12 2E-16 125.5 10.9 55 220-274 294-349 (365)
69 PRK14298 chaperone protein Dna 99.3 7.2E-12 1.6E-16 126.8 9.5 56 220-275 292-348 (377)
70 PRK09430 djlA Dna-J like membr 99.3 2.8E-12 6.1E-17 123.8 5.4 54 10-63 198-262 (267)
71 PRK14301 chaperone protein Dna 99.2 3E-11 6.4E-16 122.2 10.2 56 220-275 291-347 (373)
72 PRK14279 chaperone protein Dna 99.2 3.3E-11 7.1E-16 122.7 10.0 117 143-272 189-372 (392)
73 COG5407 SEC63 Preprotein trans 99.2 4.1E-12 8.9E-17 125.9 3.0 66 11-76 97-171 (610)
74 PRK14300 chaperone protein Dna 99.2 6.3E-11 1.4E-15 119.9 10.6 53 220-272 293-346 (372)
75 PRK14284 chaperone protein Dna 99.2 6.1E-11 1.3E-15 120.7 10.2 57 219-275 306-363 (391)
76 TIGR02349 DnaJ_bact chaperone 99.2 7.1E-11 1.5E-15 118.9 9.9 54 220-273 294-348 (354)
77 PRK14293 chaperone protein Dna 99.2 1.1E-10 2.4E-15 118.2 10.2 56 220-275 294-351 (374)
78 PRK14287 chaperone protein Dna 99.2 9.8E-11 2.1E-15 118.4 9.6 56 220-275 289-345 (371)
79 PRK14295 chaperone protein Dna 99.2 1.4E-10 3E-15 118.0 10.5 53 220-272 314-366 (389)
80 PRK14278 chaperone protein Dna 99.2 1.9E-10 4.1E-15 116.6 11.3 53 220-272 291-344 (378)
81 PRK14286 chaperone protein Dna 99.1 2.1E-10 4.7E-15 116.0 10.4 117 143-272 166-351 (372)
82 PRK14280 chaperone protein Dna 99.1 2.4E-10 5.3E-15 115.8 10.5 53 220-272 294-347 (376)
83 PRK14276 chaperone protein Dna 99.1 2.1E-10 4.6E-15 116.4 8.3 53 220-272 297-350 (380)
84 PRK14281 chaperone protein Dna 99.1 2.8E-10 6.1E-15 116.1 8.8 53 220-272 313-366 (397)
85 PRK14292 chaperone protein Dna 99.1 3E-10 6.4E-15 115.0 8.6 129 132-273 145-343 (371)
86 PRK14297 chaperone protein Dna 99.1 5.7E-10 1.2E-14 113.3 10.5 53 220-272 299-352 (380)
87 PRK14296 chaperone protein Dna 99.1 5.8E-10 1.2E-14 112.8 10.3 53 220-272 301-355 (372)
88 PRK14289 chaperone protein Dna 99.1 6.1E-10 1.3E-14 113.3 9.9 49 220-268 305-354 (386)
89 PRK14291 chaperone protein Dna 99.0 1.7E-09 3.7E-14 109.9 11.3 43 220-262 303-346 (382)
90 PTZ00037 DnaJ_C chaperone prot 99.0 1.1E-09 2.4E-14 112.1 8.9 48 220-267 302-355 (421)
91 PRK14283 chaperone protein Dna 99.0 2.4E-09 5.2E-14 108.7 10.7 53 220-272 297-350 (378)
92 TIGR00714 hscB Fe-S protein as 98.9 1.3E-09 2.8E-14 97.1 5.1 49 24-72 3-60 (157)
93 PLN03165 chaperone protein dna 98.9 6.1E-09 1.3E-13 86.6 6.8 61 143-217 40-100 (111)
94 COG5269 ZUO1 Ribosome-associat 98.8 1.3E-09 2.7E-14 102.1 2.9 70 5-74 36-114 (379)
95 PRK01773 hscB co-chaperone Hsc 98.8 4.5E-09 9.8E-14 94.9 5.3 60 12-71 2-72 (173)
96 PRK14299 chaperone protein Dna 98.8 1.1E-08 2.4E-13 100.2 8.0 71 264-344 125-195 (291)
97 KOG1150 Predicted molecular ch 98.7 1.5E-08 3.3E-13 91.0 3.6 60 10-69 51-115 (250)
98 PRK10266 curved DNA-binding pr 98.6 8.3E-08 1.8E-12 94.8 7.9 75 266-344 115-202 (306)
99 KOG1789 Endocytosis protein RM 98.6 4.7E-08 1E-12 105.3 5.3 60 4-63 1273-1337(2235)
100 TIGR02642 phage_xxxx uncharact 98.3 7.5E-07 1.6E-11 80.9 5.6 51 187-238 99-149 (186)
101 KOG0568 Molecular chaperone (D 98.2 9.6E-07 2.1E-11 81.2 4.4 52 12-63 47-102 (342)
102 PF01556 CTDII: DnaJ C termina 98.2 9E-07 1.9E-11 70.0 3.6 48 219-266 27-76 (81)
103 KOG0723 Molecular chaperone (D 98.1 3.8E-06 8.3E-11 68.3 5.4 59 5-64 50-108 (112)
104 KOG0712 Molecular chaperone (D 98.0 1.8E-05 3.9E-10 78.0 8.9 44 219-262 279-324 (337)
105 COG1107 Archaea-specific RecJ- 97.8 1.2E-05 2.6E-10 83.0 2.4 27 146-172 4-30 (715)
106 KOG2813 Predicted molecular ch 97.6 6.4E-05 1.4E-09 72.4 4.6 60 144-224 198-277 (406)
107 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.5 4.5E-05 9.7E-10 57.9 2.2 44 142-197 13-66 (66)
108 TIGR03835 termin_org_DnaJ term 97.3 0.001 2.2E-08 71.6 8.7 68 12-79 2-72 (871)
109 COG1107 Archaea-specific RecJ- 96.8 0.0011 2.4E-08 68.9 3.8 46 144-201 18-82 (715)
110 PLN03165 chaperone protein dna 96.7 0.0013 2.9E-08 54.9 2.9 40 146-201 54-100 (111)
111 KOG2813 Predicted molecular ch 96.5 0.0016 3.5E-08 63.0 2.5 76 130-215 170-257 (406)
112 COG1076 DjlA DnaJ-domain-conta 96.4 0.0017 3.7E-08 58.9 2.1 51 11-61 112-173 (174)
113 KOG3192 Mitochondrial J-type c 96.0 0.0046 9.9E-08 54.1 2.4 65 7-71 3-78 (168)
114 TIGR02642 phage_xxxx uncharact 95.6 0.0074 1.6E-07 55.1 2.2 29 144-172 99-127 (186)
115 PF03656 Pam16: Pam16; InterP 94.0 0.094 2E-06 45.0 4.9 52 13-64 59-110 (127)
116 COG1076 DjlA DnaJ-domain-conta 93.9 0.02 4.4E-07 51.9 0.7 60 13-72 2-72 (174)
117 KOG0431 Auxilin-like protein a 93.4 0.087 1.9E-06 54.9 4.3 43 19-61 395-448 (453)
118 KOG0724 Zuotin and related mol 90.2 0.26 5.6E-06 49.3 3.4 52 23-74 3-62 (335)
119 PF11833 DUF3353: Protein of u 88.9 0.76 1.7E-05 42.4 5.2 38 21-62 1-38 (194)
120 PF13446 RPT: A repeated domai 87.3 0.93 2E-05 33.6 3.9 44 13-63 6-49 (62)
121 cd03031 GRX_GRX_like Glutaredo 85.7 0.7 1.5E-05 40.7 2.9 22 146-172 101-122 (147)
122 KOG2824 Glutaredoxin-related p 85.6 0.71 1.5E-05 44.4 3.1 51 145-210 230-280 (281)
123 KOG0715 Molecular chaperone (D 79.8 1 2.2E-05 44.1 1.8 53 138-203 175-233 (288)
124 TIGR00630 uvra excinuclease AB 78.7 1.4 3.1E-05 50.0 2.7 20 339-358 855-875 (924)
125 smart00709 Zpr1 Duplicated dom 77.5 7.6 0.00016 34.7 6.5 20 220-239 81-100 (160)
126 TIGR00310 ZPR1_znf ZPR1 zinc f 77.0 16 0.00035 33.7 8.6 36 162-197 2-40 (192)
127 COG0178 UvrA Excinuclease ATPa 73.6 3.8 8.3E-05 45.4 4.1 25 331-358 844-869 (935)
128 KOG2824 Glutaredoxin-related p 70.7 3.8 8.3E-05 39.5 3.0 40 161-216 230-275 (281)
129 PRK00349 uvrA excinuclease ABC 70.4 3.3 7E-05 47.3 2.9 24 332-358 853-877 (943)
130 PRK14714 DNA polymerase II lar 68.6 4.2 9.2E-05 46.9 3.2 61 133-214 657-720 (1337)
131 PRK00635 excinuclease ABC subu 67.4 3.5 7.7E-05 49.8 2.5 25 331-358 1721-1746(1809)
132 PF07709 SRR: Seven Residue Re 63.3 5.4 0.00012 20.6 1.4 13 50-62 2-14 (14)
133 cd03031 GRX_GRX_like Glutaredo 59.4 12 0.00025 33.0 3.6 39 161-215 100-145 (147)
134 PRK04023 DNA polymerase II lar 59.0 6.5 0.00014 44.4 2.4 69 128-219 610-679 (1121)
135 PRK00349 uvrA excinuclease ABC 57.4 8.1 0.00017 44.2 2.9 34 190-225 741-781 (943)
136 TIGR00630 uvra excinuclease AB 56.8 5.3 0.00011 45.5 1.3 33 190-224 739-778 (924)
137 TIGR00757 RNaseEG ribonuclease 53.3 6.6 0.00014 40.6 1.3 33 169-201 371-404 (414)
138 PF12434 Malate_DH: Malate deh 52.0 16 0.00034 22.5 2.2 17 26-42 10-26 (28)
139 TIGR00340 zpr1_rel ZPR1-relate 51.9 27 0.00059 31.3 4.8 20 220-239 78-98 (163)
140 PF12991 DUF3875: Domain of un 50.8 19 0.00041 26.0 2.8 25 329-353 26-52 (54)
141 PF07739 TipAS: TipAS antibiot 50.8 17 0.00038 29.8 3.3 52 19-75 51-104 (118)
142 PRK12336 translation initiatio 48.5 94 0.002 28.8 8.0 35 219-253 149-184 (201)
143 PF14687 DUF4460: Domain of un 47.3 36 0.00079 28.5 4.6 43 22-64 4-54 (112)
144 PF07092 DUF1356: Protein of u 46.6 12 0.00025 35.6 1.6 14 188-201 39-52 (238)
145 PF03833 PolC_DP2: DNA polymer 43.3 7.9 0.00017 43.0 0.0 53 144-218 655-707 (900)
146 COG1198 PriA Primosomal protei 43.3 32 0.00069 38.2 4.6 60 134-212 420-484 (730)
147 PRK11712 ribonuclease G; Provi 42.5 11 0.00024 39.8 1.0 32 170-201 384-416 (489)
148 TIGR03655 anti_R_Lar restricti 40.9 44 0.00095 23.8 3.6 10 162-171 3-12 (53)
149 PF11023 DUF2614: Protein of u 40.2 14 0.0003 30.9 1.0 27 186-212 68-94 (114)
150 PF02814 UreE_N: UreE urease a 39.2 66 0.0014 23.8 4.5 32 287-318 30-61 (65)
151 PRK02935 hypothetical protein; 38.0 19 0.0004 29.8 1.4 27 186-212 69-95 (110)
152 PF13719 zinc_ribbon_5: zinc-r 36.4 13 0.00029 24.5 0.3 9 161-169 3-11 (37)
153 PF07092 DUF1356: Protein of u 36.2 17 0.00037 34.5 1.0 16 143-158 37-52 (238)
154 COG0178 UvrA Excinuclease ATPa 36.1 17 0.00036 40.6 1.1 33 162-198 732-764 (935)
155 PRK03564 formate dehydrogenase 35.7 37 0.0008 33.7 3.3 11 143-153 186-196 (309)
156 PRK05580 primosome assembly pr 34.5 53 0.0011 36.3 4.7 61 134-213 366-431 (679)
157 PRK00488 pheS phenylalanyl-tRN 34.5 30 0.00065 34.8 2.5 21 144-172 260-280 (339)
158 PRK00635 excinuclease ABC subu 33.7 17 0.00036 44.4 0.7 30 189-218 1609-1645(1809)
159 PF04246 RseC_MucC: Positive r 33.4 50 0.0011 28.2 3.5 20 219-238 42-61 (135)
160 COG5216 Uncharacterized conser 32.5 27 0.00059 25.7 1.3 16 123-138 30-45 (67)
161 PF08792 A2L_zn_ribbon: A2L zi 32.0 50 0.0011 21.3 2.4 10 162-171 5-14 (33)
162 PRK14559 putative protein seri 31.5 32 0.00069 37.7 2.3 49 145-212 2-50 (645)
163 PF14205 Cys_rich_KTR: Cystein 31.3 1.1E+02 0.0023 22.3 4.2 14 204-217 29-42 (55)
164 PRK00464 nrdR transcriptional 31.1 53 0.0012 29.1 3.3 35 162-196 2-37 (154)
165 PF03367 zf-ZPR1: ZPR1 zinc-fi 30.9 73 0.0016 28.4 4.2 35 161-195 2-38 (161)
166 smart00440 ZnF_C2C2 C2C2 Zinc 29.7 91 0.002 20.9 3.5 18 162-179 2-19 (40)
167 PRK12380 hydrogenase nickel in 29.5 62 0.0013 27.0 3.3 10 189-198 88-97 (113)
168 TIGR00595 priA primosomal prot 29.4 52 0.0011 35.0 3.5 61 134-213 198-263 (505)
169 PF01155 HypA: Hydrogenase exp 29.2 27 0.00059 29.1 1.1 10 188-197 87-96 (113)
170 COG1326 Uncharacterized archae 29.0 2E+02 0.0042 26.6 6.5 21 220-240 64-86 (201)
171 COG2190 NagE Phosphotransferas 28.7 85 0.0018 27.9 4.1 47 287-340 62-111 (156)
172 TIGR01562 FdhE formate dehydro 28.6 56 0.0012 32.4 3.3 10 144-153 184-193 (305)
173 KOG0315 G-protein beta subunit 28.1 43 0.00093 32.3 2.2 32 273-304 18-50 (311)
174 PF14353 CpXC: CpXC protein 28.1 72 0.0016 26.9 3.5 12 187-198 38-49 (128)
175 PF10080 DUF2318: Predicted me 28.0 96 0.0021 25.6 4.0 9 162-170 37-45 (102)
176 PF03589 Antiterm: Antitermina 27.3 15 0.00032 29.9 -0.9 11 188-198 33-43 (95)
177 TIGR00100 hypA hydrogenase nic 27.2 77 0.0017 26.5 3.5 11 188-198 87-97 (115)
178 cd05792 S1_eIF1AD_like S1_eIF1 26.4 2.1E+02 0.0046 22.3 5.5 23 282-304 8-31 (78)
179 PF01155 HypA: Hydrogenase exp 26.3 55 0.0012 27.3 2.4 28 144-171 70-97 (113)
180 KOG3442 Uncharacterized conser 25.8 1.1E+02 0.0025 26.0 4.1 33 15-47 62-94 (132)
181 COG1530 CafA Ribonucleases G a 25.3 73 0.0016 33.7 3.7 26 176-201 384-409 (487)
182 PF07754 DUF1610: Domain of un 25.0 53 0.0012 19.7 1.5 8 187-194 16-23 (24)
183 PF03811 Zn_Tnp_IS1: InsA N-te 24.2 56 0.0012 21.5 1.6 10 187-196 5-14 (36)
184 PRK14873 primosome assembly pr 24.2 89 0.0019 34.5 4.2 58 134-212 369-431 (665)
185 PRK13263 ureE urease accessory 23.6 1.6E+02 0.0035 27.4 5.1 44 274-318 24-67 (206)
186 PF08273 Prim_Zn_Ribbon: Zinc- 23.0 59 0.0013 22.0 1.6 12 144-155 3-14 (40)
187 KOG0724 Zuotin and related mol 22.9 20 0.00044 35.6 -1.0 58 15-73 28-86 (335)
188 cd02639 R3H_RRM R3H domain of 22.8 1.1E+02 0.0024 22.6 3.1 21 336-356 17-37 (60)
189 PRK12380 hydrogenase nickel in 22.6 56 0.0012 27.3 1.8 30 143-172 69-98 (113)
190 PF04967 HTH_10: HTH DNA bindi 22.3 29 0.00063 25.0 -0.0 33 5-37 20-52 (53)
191 KOG0005 Ubiquitin-like protein 22.1 34 0.00074 25.3 0.3 37 287-323 2-38 (70)
192 PF08774 VRR_NUC: VRR-NUC doma 21.9 1.2E+02 0.0027 24.1 3.7 26 333-358 62-88 (100)
193 TIGR00100 hypA hydrogenase nic 21.9 86 0.0019 26.2 2.8 29 144-172 70-98 (115)
194 PF05180 zf-DNL: DNL zinc fing 21.7 53 0.0011 24.9 1.3 14 161-174 5-18 (66)
195 PF02963 EcoRI: Restriction en 21.5 47 0.001 30.9 1.2 38 287-325 162-199 (257)
196 COG0551 TopA Zn-finger domain 21.4 2.9E+02 0.0062 23.7 6.1 50 160-211 60-109 (140)
197 PF14354 Lar_restr_allev: Rest 21.3 1.1E+02 0.0025 21.9 3.1 32 161-195 4-37 (61)
198 PRK05978 hypothetical protein; 21.1 53 0.0012 28.9 1.4 8 203-210 52-59 (148)
199 cd04479 RPA3 RPA3: A subfamily 20.8 4.6E+02 0.0099 21.2 7.4 68 284-358 28-95 (101)
200 PRK14051 negative regulator Gr 20.7 3E+02 0.0065 22.9 5.5 70 250-323 48-119 (123)
201 PTZ00111 DNA replication licen 20.6 4.3E+02 0.0093 30.4 8.6 15 344-358 568-582 (915)
202 COG5552 Uncharacterized conser 20.6 3.3E+02 0.0071 21.1 5.3 29 13-41 4-32 (88)
203 PRK08351 DNA-directed RNA poly 20.5 98 0.0021 23.0 2.5 12 202-213 14-25 (61)
204 PF12387 Peptidase_C74: Pestiv 20.4 58 0.0013 29.3 1.5 13 49-61 53-65 (200)
No 1
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=4.5e-102 Score=787.22 Aligned_cols=398 Identities=48% Similarity=0.890 Sum_probs=355.8
Q ss_pred CCCCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCccccccccccccccccccCC
Q 014903 4 RAPKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG 83 (416)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~ 83 (416)
|..+.+..+|||+||||+++||.+|||+|||+||++||||+|+++++|++|++||||||||+||+.||+||++++.++.
T Consensus 20 ~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~- 98 (421)
T PTZ00037 20 RRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE- 98 (421)
T ss_pred cccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC-
Confidence 3444455789999999999999999999999999999999999899999999999999999999999999998876321
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCceeeC
Q 014903 84 GGAGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKC 163 (416)
Q Consensus 84 gg~~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C 163 (416)
++.++.|+|+.|||+++ +..+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.......+|
T Consensus 99 ---~~~d~~d~f~~~Fggg~------~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C 169 (421)
T PTZ00037 99 ---QPADASDLFDLIFGGGR------KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDC 169 (421)
T ss_pred ---CCcchhhhHHHhhcccc------ccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccC
Confidence 12456789999997421 112345789999999999999999999999999999999999999887777899
Q ss_pred CCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCC
Q 014903 164 SGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADE 243 (416)
Q Consensus 164 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 243 (416)
+.|+|+|+++.++++|| |+++++++|+.|+|+|+++.++++|+.|+|++++.+.+.|+|.||||+++|++|+|+|+|++
T Consensus 170 ~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 170 KLCNGQGIRVQIRQMGS-MIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred CCCCCCCeEEEEEeecc-eeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC
Confidence 99999999999999999 88999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 244 APDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 244 ~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
.++..||||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.|.|++|||+|++||++++|+|+|||.
T Consensus 249 ~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~ 328 (421)
T PTZ00037 249 KPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPT 328 (421)
T ss_pred CCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCccc
Confidence 88899999999999999999999999999999999999999999999999999899999999999999999999999998
Q ss_pred CCCCCCCCCeEEEEEEECC--CCCCHHHHHHHHHHCCCCCCCCCCCCCccccceeeeecCChhHHHHHhhhccccccccc
Q 014903 324 YQRPFMKGKLYIHFTVEFP--DSLTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEED 401 (416)
Q Consensus 324 ~~~~~~~GdL~v~~~V~fP--~~l~~~~~~~L~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (416)
.++++.+|||||+|+|+|| +.||++|+++|++|||.++.... ++++.++|+++++++|+++...+ .++++|+||
T Consensus 329 ~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~~~~ 404 (421)
T PTZ00037 329 YKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQNPEEKK-DLEDTEIEVVTAQNVDPEEVKDR---DQKQQYQED 404 (421)
T ss_pred CCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccCCCCCCC-CCCcccceeEecccCCHHHhhhh---HHHHhhccc
Confidence 7665679999999999999 88999999999999997654433 55678899999999999765433 245677655
Q ss_pred CCCC--CCCCCCCCcCC
Q 014903 402 EDMP--GGAQRVQCAQQ 416 (416)
Q Consensus 402 ~~~~--~~~~~~~c~~q 416 (416)
+|++ +++++||||||
T Consensus 405 ~~~~~~~~~~~v~c~~q 421 (421)
T PTZ00037 405 EDDEHHQEGERVACRQQ 421 (421)
T ss_pred cccccCCCCCccccCCC
Confidence 5443 56789999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-96 Score=718.97 Aligned_cols=340 Identities=41% Similarity=0.745 Sum_probs=307.5
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHHcCCccccccccccccccccc-cCCC
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGG-D---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGG 84 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~-~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~-g~~g 84 (416)
..+|||+||||+++||.+||||||||||+|||||+|+ + ++||+||++||||||||+||++||+||.+++++ |+++
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 5689999999999999999999999999999999999 4 389999999999999999999999999999863 2222
Q ss_pred -CCC-CC-CcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccC-ce
Q 014903 85 -GAG-AH-DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSG-AS 160 (416)
Q Consensus 85 -g~~-~~-d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~-~~ 160 (416)
+++ +. ++.|||++||||+++ +++++.+++++.|+.+.|+|||+|+|.|+++++.+++.+.|++|+|+|++.+ ..
T Consensus 82 ~g~~~fgg~~~DIF~~~FgGg~~--~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~ 159 (371)
T COG0484 82 FGFGGFGGDFGDIFEDFFGGGGG--GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDP 159 (371)
T ss_pred CCcCCCCCCHHHHHHHhhcCCCc--ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCC
Confidence 111 11 578999999974322 2233445789999999999999999999999999999999999999999998 45
Q ss_pred eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCC
Q 014903 161 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGE 240 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~ 240 (416)
.+|++|+|+|++...+++ ++++++++|+.|+|+|++| +++|+.|+|.+++.+.++|+|+||+|+.+|++|++.|+
T Consensus 160 ~tC~tC~G~G~v~~~~~~---g~~~~~~~C~~C~G~G~~i--~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~ 234 (371)
T COG0484 160 KTCPTCNGSGQVRTVQRT---GFFSFQQTCPTCNGTGKII--KDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGE 234 (371)
T ss_pred CcCCCCCCcCeEEEEEee---eEEEEEEECCCCccceeEC--CCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecC
Confidence 799999999999888887 4578899999999999999 49999999999999999999999999999999999999
Q ss_pred cCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCC
Q 014903 241 ADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEE 319 (416)
Q Consensus 241 G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~ 319 (416)
|++.+ ++++|||||+|.|++|+.|+|+|+|||++++|++.+|++|++++|+||||+ +.|+||+| +++|++++|+|+
T Consensus 235 G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~-~~l~ip~G--tq~G~~~rl~gk 311 (371)
T COG0484 235 GEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGR-VKLKIPAG--TQTGEVFRLRGK 311 (371)
T ss_pred cccCCCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCC-EEEecCCC--CccCcEEEEcCC
Confidence 99965 777899999999999999999999999999999999999999999999999 99999999 678999999999
Q ss_pred CccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCCC
Q 014903 320 GMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSR 360 (416)
Q Consensus 320 GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~~ 360 (416)
|||..+ +..+|||||+++|++|++|+.+|+++|+++....
T Consensus 312 G~p~~~-~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~ 351 (371)
T COG0484 312 GMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELLEEFAKSL 351 (371)
T ss_pred CccccC-CCCcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 999864 4567999999999999999999999999998744
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-89 Score=661.36 Aligned_cols=335 Identities=60% Similarity=1.034 Sum_probs=314.0
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHcCCccccccccccccccccccCCCCCCC
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGA 88 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~gg~~~ 88 (416)
.++.||+||||+++||++|||||||+||++|||||||++ +||++|++||||||||+||++||+||++++++|+++++ +
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g-~ 80 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGG-F 80 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCC-C
Confidence 578999999999999999999999999999999999986 99999999999999999999999999999976543332 2
Q ss_pred CCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCceeeCCCCcc
Q 014903 89 HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQG 168 (416)
Q Consensus 89 ~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G 168 (416)
+. |++||+.++. + .+++.|+.|+.|.++||||++|.|+++++.++++.+|++|+|+|.++++..+|+.|.|
T Consensus 81 ~~----f~~~F~~g~~-~----~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~G 151 (337)
T KOG0712|consen 81 GG----FSQFFGFGGN-G----GRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRG 151 (337)
T ss_pred cc----HHHhccCCCc-C----ccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCC
Confidence 22 8888873211 1 2233449999999999999999999999999999999999999999999899999999
Q ss_pred ccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCCCCCCC
Q 014903 169 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 248 (416)
Q Consensus 169 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 248 (416)
+|+.+.++++||||+++++..|..|+|+|.++..+++|+.|.|++++.+.+.++|+|++|++++++|++.|++++.++..
T Consensus 152 sGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~ 231 (337)
T KOG0712|consen 152 SGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTK 231 (337)
T ss_pred CCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCC
Q 014903 249 TGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPF 328 (416)
Q Consensus 249 ~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~ 328 (416)
+||++|.|.+++|+.|.|+|+||++..+|+|.||||||.+.+.||||+.|.|+++||+||+||++++|+|+|||++.++
T Consensus 232 pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~- 310 (337)
T KOG0712|consen 232 PGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP- 310 (337)
T ss_pred CccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCeEEEEEEECCCCCCHHHHHHHHHHC
Q 014903 329 MKGKLYIHFTVEFPDSLTPDQVKALEAIL 357 (416)
Q Consensus 329 ~~GdL~v~~~V~fP~~l~~~~~~~L~~~l 357 (416)
+|||||+|+|+||+ |+++++..|+.+|
T Consensus 311 -~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 311 -KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred -CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 99999999999999 9999999999886
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-87 Score=672.55 Aligned_cols=338 Identities=30% Similarity=0.552 Sum_probs=301.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCcccccccccccccccccc--CCCC
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG--MGGG 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g--~~gg 85 (416)
.+|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||+.||+||+++++.+ ++++
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~ 82 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSN 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcC
Confidence 5799999999999999999999999999999999975 3899999999999999999999999999877531 1111
Q ss_pred -C------------CCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeecccccc
Q 014903 86 -A------------GAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSG 152 (416)
Q Consensus 86 -~------------~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G 152 (416)
+ ++.++.|+|++|||++ + ++.+++.++.|+.+.|.|||+|+|+|+++++.+++.+.|++|+|
T Consensus 83 ~~~~~~~~~~~~~~g~~~f~d~f~~~fggg----~-~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G 157 (372)
T PRK14296 83 FGDFEDLFSNMGSSGFSSFTNIFSDFFGSN----K-SDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFG 157 (372)
T ss_pred CCccccccccccccccccchhhhhhhcCCC----c-cCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCC
Confidence 0 1112347888888742 1 11233467899999999999999999999999999999999999
Q ss_pred CCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCcc
Q 014903 153 KGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQN 231 (416)
Q Consensus 153 ~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 231 (416)
+|...+. ..+|+.|+|+|+++..+++|| |+++++++|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||+|+++
T Consensus 158 ~G~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 234 (372)
T PRK14296 158 SGAESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNVCNGAGKIIK--NKCKNCKGKGKYLERKKIEVNIPKGIRP 234 (372)
T ss_pred CccCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCCcCCcceeec--ccccCCCCceEEEEEEEEEEEECCCCCC
Confidence 9998765 468999999999999999999 66688999999999999986 8899999999999999999999999999
Q ss_pred CCeEeecCCcCCC-CCCCcccEEEEEEEecCCCcccc-ccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCcccc
Q 014903 232 GQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRK-GEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVK 309 (416)
Q Consensus 232 G~~i~~~g~G~~~-~~~~~GDliv~i~~~~h~~f~R~-G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~ 309 (416)
|++|+|+|+|++. ++..+|||||+|++++|+.|+|+ |+|||++++|||+|||+|+++.|+||||+ +.|++|++ ++
T Consensus 235 G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~-~~v~ip~~--t~ 311 (372)
T PRK14296 235 NQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD-IKYKLPKS--IN 311 (372)
T ss_pred CCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC-EEEEECCc--cC
Confidence 9999999999985 57789999999999999999995 89999999999999999999999999998 89999987 89
Q ss_pred CCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 310 PDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 310 ~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
||++++|+|+|||...+++.+|||||+|+|+||+.|+++|+++|++++..
T Consensus 312 ~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~ 361 (372)
T PRK14296 312 SNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQ 361 (372)
T ss_pred CCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999997655567899999999999999999999999999964
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.8e-86 Score=662.99 Aligned_cols=336 Identities=29% Similarity=0.568 Sum_probs=294.7
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCCCCC
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGA 86 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~gg~ 86 (416)
.+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++..+.++++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~ 81 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQS 81 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCcc
Confidence 4799999999999999999999999999999999973 389999999999999999999999999987763211111
Q ss_pred CCCCcc----cccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCceee
Q 014903 87 GAHDPF----DIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMK 162 (416)
Q Consensus 87 ~~~d~~----diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~ 162 (416)
++.++| ++|++|||+++ .+++..+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.......+
T Consensus 82 ~~~~~f~~~~~~F~~~fg~g~---~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 158 (369)
T PRK14288 82 DFSDFFEDLGSFFEDAFGFGA---RGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALET 158 (369)
T ss_pred ccccchhhHHHHHHhhcCCCC---cccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcC
Confidence 222333 35566665321 11111234578999999999999999999999999999999999999998876789
Q ss_pred CCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcC
Q 014903 163 CSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEAD 242 (416)
Q Consensus 163 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 242 (416)
|+.|+|+|+++..+ |++ +++++|+.|.|+|+++. ..|+.|+|++++.+.+.++|.||||+++|++|+|+|+|+
T Consensus 159 C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~ 231 (369)
T PRK14288 159 CKQCNGQGQVFMRQ----GFM-SFAQTCGACQGKGKIIK--TPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN 231 (369)
T ss_pred CCCCCCCcEEEEEe----ceE-EEEEecCCCCCCceEcc--ccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCcc
Confidence 99999999876543 344 56779999999999986 789999999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCcc
Q 014903 243 EAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMP 322 (416)
Q Consensus 243 ~~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP 322 (416)
+.+++.+|||||+|++++|+.|+|+|+|||++++|||+|||+|+++.|+||||+.+.|++|++ ++||++++|+|+|||
T Consensus 232 ~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~--~~~g~~~~i~g~G~p 309 (369)
T PRK14288 232 EYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRN--ARDRQTFAFRNEGVK 309 (369)
T ss_pred CCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCC--CCCCcEEEEcCCCCC
Confidence 988888999999999999999999999999999999999999999999999999889999987 899999999999999
Q ss_pred CCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 323 LYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 323 ~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
..+ +..+|||||+|+|+||++|+++|+++|+++|+.
T Consensus 310 ~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~ 345 (369)
T PRK14288 310 HPE-SSYRGSLIVELQVIYPKSLNKEQQELLEKLHAS 345 (369)
T ss_pred CCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 764 346899999999999999999999999999974
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-84 Score=650.22 Aligned_cols=341 Identities=36% Similarity=0.641 Sum_probs=303.0
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCC
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG 84 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g 84 (416)
|+..+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||+.||+||+++++.++++
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSA 80 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCc
Confidence 5556899999999999999999999999999999999975 3899999999999999999999999999887643211
Q ss_pred -----CCCCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc
Q 014903 85 -----GAGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA 159 (416)
Q Consensus 85 -----g~~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~ 159 (416)
++++.++.|+|++|||+++ + .+.++++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~d~f~~~Fgg~~---~-~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 156 (377)
T PRK14298 81 EDIFRGADFGGFGDIFEMFFGGGG---R-RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGT 156 (377)
T ss_pred ccccccCCcCcchhhhHhhhcCCC---c-cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCC
Confidence 1112334589999997421 1 111234678999999999999999999999999999999999999998776
Q ss_pred e-eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeec
Q 014903 160 S-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFP 238 (416)
Q Consensus 160 ~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 238 (416)
. .+|+.|+|+|+++..+++ |+++++++++|+.|.|+|+++. ++|+.|+|++++.+.++++|.||||+++|++|+|+
T Consensus 157 ~~~~C~~C~G~G~~~~~~~~-~~g~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~ 233 (377)
T PRK14298 157 SPKRCPTCGGTGQVTTTRST-PLGQFVTTTTCSTCHGRGQVIE--SPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLS 233 (377)
T ss_pred CCCcCCCCCCccEEEEEEec-CceeEEEEEeCCCCCCCCcccC--CCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEe
Confidence 4 689999999999888885 4455689999999999999885 78999999999999999999999999999999999
Q ss_pred CCcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeC
Q 014903 239 GEADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAIN 317 (416)
Q Consensus 239 g~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~ 317 (416)
|+|++. ++..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+| +++|++++|+
T Consensus 234 g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-i~v~ip~g--~~~g~~lri~ 310 (377)
T PRK14298 234 GEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGK-VKMNIPPG--TQTHSVFRLK 310 (377)
T ss_pred cccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCC-EEEEeCCC--cccCCEEEEC
Confidence 999984 5778999999999999999999999999999999999999999999999998 78999998 7999999999
Q ss_pred CCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 318 EEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 318 g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
|+|||..+ ...+|||||+|+|+||+.|+++++++|++++..
T Consensus 311 g~G~p~~~-~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~ 351 (377)
T PRK14298 311 DKGMPRLH-GHGKGDQLVKVIVKTPTKLTQEQKELLREFDEL 351 (377)
T ss_pred CCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999764 346899999999999999999999999999863
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.8e-84 Score=647.83 Aligned_cols=339 Identities=35% Similarity=0.683 Sum_probs=296.9
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCCC-C
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g-g 85 (416)
++|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||+++++.+.++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 4799999999999999999999999999999999973 3899999999999999999999999999887632111 1
Q ss_pred -CC-------CCCcccccccccCCCCCCC-CCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcc
Q 014903 86 -AG-------AHDPFDIFSSFFGGSPFGG-GSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSK 156 (416)
Q Consensus 86 -~~-------~~d~~diF~~fFGg~~~~g-~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~ 156 (416)
++ +.++.|+|++|||+++.++ .+.+..++.++.|+.+.|.|||||+|+|+++++.+++.+.|++|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 11 1234489999998532111 01111234578999999999999999999999999999999999999998
Q ss_pred cCce-eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeE
Q 014903 157 SGAS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKI 235 (416)
Q Consensus 157 ~~~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 235 (416)
.... .+|+.|+|+|+++..+ |++ +++++|+.|.|+|+++. ++|+.|+|++++.+.+.++|.||||+++|++|
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i 235 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRTQ----GFF-SVATTCPTCRGKGTVIS--NPCKTCGGQGLQEKRRTINIKIPPGVETGSRL 235 (372)
T ss_pred CCCCCccCCCCcCeEEEEEEe----ceE-EEEEeCCCCCceeeEec--ccCCCCCCCcEEecceEEEEEECCCCCCCCEE
Confidence 7654 6899999999876643 455 47889999999999986 78999999999999999999999999999999
Q ss_pred eecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEE
Q 014903 236 TFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYK 314 (416)
Q Consensus 236 ~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~ 314 (416)
+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|++|++ +++|+++
T Consensus 236 ~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g--~~~g~~~ 313 (372)
T PRK14286 236 KVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG--TESGQVF 313 (372)
T ss_pred EECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCc--cCCCcEE
Confidence 9999999866 456799999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred EeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 315 AINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 315 ~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
+|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++|..
T Consensus 314 ri~G~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 357 (372)
T PRK14286 314 RLKGHGMPYLG-AYGKGDQHVIVKIEIPKKITRRQRELIEEFARE 357 (372)
T ss_pred EECCCCCCCCC-CCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999764 346899999999999999999999999999964
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-83 Score=650.27 Aligned_cols=344 Identities=33% Similarity=0.641 Sum_probs=301.7
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCcccccccccccccccccc-C
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG-M 82 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g-~ 82 (416)
|+...|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||.||+.||+||+++++.+ +
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~ 80 (386)
T PRK14277 1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGF 80 (386)
T ss_pred CCCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccccccc
Confidence 4556899999999999999999999999999999999974 3799999999999999999999999999877531 1
Q ss_pred C------CCC--CC-----CCcccccccccCCCCCCCCCC-CccccccCcceeeeeEeeeeeeecCceeeecceeeeecc
Q 014903 83 G------GGA--GA-----HDPFDIFSSFFGGSPFGGGSS-RGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICS 148 (416)
Q Consensus 83 ~------gg~--~~-----~d~~diF~~fFGg~~~~g~~~-~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~ 148 (416)
+ ++. ++ .++.|+|++||++. |+++.. +..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~-fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~ 159 (386)
T PRK14277 81 GQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDF-FGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCD 159 (386)
T ss_pred ccCCcCCCCccccCccccccchhHHHHHhhccc-ccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCC
Confidence 0 010 00 12236788888632 222111 112345789999999999999999999999999999999
Q ss_pred ccccCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcC
Q 014903 149 KCSGKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEK 227 (416)
Q Consensus 149 ~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 227 (416)
+|+|+|..... ..+|+.|+|+|+++..++++||++++. ++|+.|.|+|+++. ++|+.|+|++++.+.+.++|.||+
T Consensus 160 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~ 236 (386)
T PRK14277 160 VCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDRCHGEGKIIT--DPCNKCGGTGRIRRRRKIKVNIPA 236 (386)
T ss_pred CCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCCCCcceeecc--CCCCCCCCCcEEeeeeEEEEecCC
Confidence 99999998765 468999999999999999999998765 79999999999986 789999999999999999999999
Q ss_pred CCccCCeEeecCCcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCc
Q 014903 228 GMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGE 306 (416)
Q Consensus 228 G~~~G~~i~~~g~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~ 306 (416)
|+++|++|+|+|+|++. .+..+|||||+|++++|+.|+|+|+||+++++|||+|||+|+++.|+||||+ +.|.||++
T Consensus 237 G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g- 314 (386)
T PRK14277 237 GIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGK-VKFTIPEG- 314 (386)
T ss_pred CccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEEECCC-
Confidence 99999999999999984 4567899999999999999999999999999999999999999999999998 78999998
Q ss_pred cccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 307 VVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 307 vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
+++|++++|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++++..
T Consensus 315 -~~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~ 365 (386)
T PRK14277 315 -TQTGTKFRLRGKGIPHLRG-RGRGDQIVKVYIEVPKKLTEKQKELLREFEKL 365 (386)
T ss_pred -CCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 7899999999999997643 36899999999999999999999999999853
No 9
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-83 Score=647.93 Aligned_cols=338 Identities=33% Similarity=0.619 Sum_probs=302.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCC---
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG--- 84 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g--- 84 (416)
++|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||++||+||++++++++++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 4799999999999999999999999999999999975 3899999999999999999999999999887643211
Q ss_pred C-C------CCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCccc
Q 014903 85 G-A------GAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKS 157 (416)
Q Consensus 85 g-~------~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~ 157 (416)
+ + ++.++.|+|++|||+++ +.+....++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~ 159 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGGG---ARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKP 159 (380)
T ss_pred CCCCccccccccchhhHHHHHhCccc---cccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCC
Confidence 1 0 11234588999997421 111122345789999999999999999999999999999999999999987
Q ss_pred Cc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEe
Q 014903 158 GA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKIT 236 (416)
Q Consensus 158 ~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 236 (416)
+. ..+|+.|+|+|+++..++++||++++ +.+|+.|.|+|+++. ++|+.|+|++++.+.+.++|.||+|+++|++|+
T Consensus 160 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~ 236 (380)
T PRK14276 160 GTSPVTCGKCHGSGVITVDTQTPLGMMRR-QVTCDVCHGTGKEIK--EPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIR 236 (380)
T ss_pred CCCCccCCCCCCeeEEEEEEecCCceEEE-EEECCCCCCCCcccc--CCCCCCCCceEEEEEEEEEEEeCCCccCCcEEE
Confidence 65 46899999999999999999999876 779999999999986 889999999999999999999999999999999
Q ss_pred ecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEE
Q 014903 237 FPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKA 315 (416)
Q Consensus 237 ~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~ 315 (416)
|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+| +++|++++
T Consensus 237 l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~-i~v~ip~g--~~~g~~~~ 313 (380)
T PRK14276 237 LQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGD-VELKIPAG--TQTGKKFR 313 (380)
T ss_pred EeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCc-EEEEECCC--CCCCCEEE
Confidence 999999865 456799999999999999999999999999999999999999999999998 78999988 79999999
Q ss_pred eCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 316 INEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 316 i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|+++|.
T Consensus 314 i~g~G~p~~~-~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~ 355 (380)
T PRK14276 314 LRGKGAPKLR-GGGNGDQHVTVNIVTPTKLNDAQKEALKAFAK 355 (380)
T ss_pred ECCCCcCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999999764 34679999999999999999999999999995
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-83 Score=644.72 Aligned_cols=339 Identities=30% Similarity=0.606 Sum_probs=302.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCC-C-
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G- 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g-g- 85 (416)
.+|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||++||+||++++..++++ +
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGA 82 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCC
Confidence 4699999999999999999999999999999999975 3799999999999999999999999999887643211 1
Q ss_pred CCCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-eeeCC
Q 014903 86 AGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA-SMKCS 164 (416)
Q Consensus 86 ~~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~ 164 (416)
+++.++.|+|++|||+++ +.+...++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|..... ..+|+
T Consensus 83 ~~f~~~~d~f~~~fgg~~---~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~ 159 (371)
T PRK14287 83 GDFGGFSDIFDMFFGGGG---GRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCS 159 (371)
T ss_pred ccccchHHHHHhhhcccc---CCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccC
Confidence 112234589999998521 11111234578999999999999999999999999999999999999998765 46899
Q ss_pred CCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCCC
Q 014903 165 GCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA 244 (416)
Q Consensus 165 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 244 (416)
.|+|+|+++..++++||++++ +.+|+.|.|+|+++. +.|+.|.|++++.+.+.++|.||||+++|++|+|+|+|++.
T Consensus 160 ~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~ 236 (371)
T PRK14287 160 HCGGSGQLNVEQNTPFGRVVN-RRVCHHCEGTGKIIK--QKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAG 236 (371)
T ss_pred CCCCEEEEEEEEecCCceEEE-EEeCCCCCCCCcccc--ccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCC
Confidence 999999999999999999875 779999999999986 88999999999999999999999999999999999999986
Q ss_pred C-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 245 P-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 245 ~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||+| +++|++++|+|+|||.
T Consensus 237 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~~~g~~~ri~g~G~p~ 313 (371)
T PRK14287 237 VNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGK-VKLKIPAG--TQTGTSFRLRGKGVPN 313 (371)
T ss_pred CCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCC-EEEEECCC--ccCCcEEEEcCCCccC
Confidence 4 567899999999999999999999999999999999999999999999998 78999998 8999999999999997
Q ss_pred CCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 324 YQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 324 ~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
.++ ..+|||||+|+|.||+.|+.+|+++|++++..
T Consensus 314 ~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~ 348 (371)
T PRK14287 314 VHG-RGQGDQHVQVRVVTPKNLTEKEKELMREFAGM 348 (371)
T ss_pred CCC-CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 643 35899999999999999999999999999953
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.4e-83 Score=644.86 Aligned_cols=340 Identities=32% Similarity=0.606 Sum_probs=300.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCccccccccccccccccccC-CCCC-
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM-GGGA- 86 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~---~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~-~gg~- 86 (416)
+|||+||||+++||.+|||+|||+||++||||+|+++ ++|++|++||||||||++|++||+||+++..++. ++++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~ 82 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG 82 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence 6999999999999999999999999999999999863 7999999999999999999999999986433211 1111
Q ss_pred -CCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-eeeCC
Q 014903 87 -GAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA-SMKCS 164 (416)
Q Consensus 87 -~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~ 164 (416)
++.++.|+|++|||+++ ++......++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.+.+. ..+|+
T Consensus 83 ~~f~~~~d~f~~ffgg~g--~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~ 160 (378)
T PRK14278 83 GGFGGLGDVFEAFFGGGA--ASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCD 160 (378)
T ss_pred cCcCchhHHHHHHhCCCC--CCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecC
Confidence 12234589999998531 111111234578999999999999999999999999999999999999998765 46899
Q ss_pred CCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCCC
Q 014903 165 GCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEA 244 (416)
Q Consensus 165 ~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 244 (416)
.|+|+|+++..++.++|++++ +++|+.|+|+|+++. ++|+.|+|++++.+.+.++|.||||+++|++|+|+|+|++.
T Consensus 161 ~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 237 (378)
T PRK14278 161 TCGGRGEVQTVQRSFLGQVMT-SRPCPTCRGVGEVIP--DPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVG 237 (378)
T ss_pred CccCceEEEEEEeccceeEEE-EEECCCCCccceeeC--CCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCC
Confidence 999999999988888888764 669999999999986 78999999999999999999999999999999999999997
Q ss_pred C-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 245 P-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 245 ~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||++.|.|.||++ +++|++++|+|+|||.
T Consensus 238 ~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g--~~~g~~lrl~g~G~p~ 315 (378)
T PRK14278 238 PGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPG--TQPGSVITLRGRGMPH 315 (378)
T ss_pred CCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCC--cCCCcEEEECCCCCCC
Confidence 6 456799999999999999999999999999999999999999999999877899999998 8999999999999997
Q ss_pred CCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 324 YQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 324 ~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
.+ ...+|||||+|+|.||+.|+++|+++|+++++.
T Consensus 316 ~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~ 350 (378)
T PRK14278 316 LR-SGGRGDLHAHVEVVVPTRLDHEDIELLRELKAL 350 (378)
T ss_pred CC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 64 346899999999999999999999999999974
No 12
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-83 Score=644.98 Aligned_cols=338 Identities=33% Similarity=0.650 Sum_probs=301.3
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCCCC-
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGA- 86 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~gg~- 86 (416)
..|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||++++..++++++
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 3699999999999999999999999999999999975 389999999999999999999999999988764321110
Q ss_pred ---C---CCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-
Q 014903 87 ---G---AHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA- 159 (416)
Q Consensus 87 ---~---~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~- 159 (416)
+ .+++.|+|++|||+++ ++.....++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...+.
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 159 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGGG---RRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTS 159 (376)
T ss_pred CCCCccccccchhhHHHHhCCcc---ccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCC
Confidence 1 1245589999997421 11111234578999999999999999999999999999999999999998765
Q ss_pred eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecC
Q 014903 160 SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 160 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 239 (416)
..+|+.|+|+|+++..+++++|+++ ++.+|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G 236 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVV-NRQTCPHCNGTGQEIK--EKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSG 236 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEE-EEEEcCCCCCCCceec--CCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcc
Confidence 4689999999999999999999876 5789999999999986 889999999999999999999999999999999999
Q ss_pred CcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 240 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 240 ~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+||++ +++|++++|+|
T Consensus 237 ~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ip~g--~~~g~~~~i~g 313 (376)
T PRK14280 237 EGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGK-VKLKIPAG--TQTGTQFRLKG 313 (376)
T ss_pred cccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCce-EEEEECCC--CCCCcEEEEcC
Confidence 999854 567899999999999999999999999999999999999999999999997 78999998 89999999999
Q ss_pred CCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 319 EGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 319 ~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
+|||... ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 314 ~G~p~~~-~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~ 352 (376)
T PRK14280 314 KGVPNVR-GYGQGDQYVVVRVVTPTKLTDRQKELLREFAE 352 (376)
T ss_pred CCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999764 34689999999999999999999999999985
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-82 Score=640.17 Aligned_cols=342 Identities=34% Similarity=0.665 Sum_probs=302.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC---
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--- 83 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~--- 83 (416)
..|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|++||+||+++++.+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 4699999999999999999999999999999999974 389999999999999999999999999988753211
Q ss_pred CCCCC------CCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCccc
Q 014903 84 GGAGA------HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKS 157 (416)
Q Consensus 84 gg~~~------~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~ 157 (416)
++++. .++.|+|++|||++ +++.+.+..+++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~-~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 161 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGG-FGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKP 161 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccC-ccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence 11111 13458899999852 211111122345789999999999999999999999999999999999999987
Q ss_pred Cc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEe
Q 014903 158 GA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKIT 236 (416)
Q Consensus 158 ~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~ 236 (416)
+. ..+|+.|+|+|+++..++++||+++ ++.+|+.|+|+|.++. +.|..|+|++++.+.+.++|.||||+++|++|+
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~ 238 (380)
T PRK14297 162 GTSPKTCDKCGGTGQIRVQRNTPLGSFV-STTTCDKCGGSGKVIE--DPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIP 238 (380)
T ss_pred CCcCccCCCccCeEEEEEEEEcCCceeE-EEEeCCCCCCCceEcC--CCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEE
Confidence 65 4689999999999999999999765 5889999999999885 889999999999999999999999999999999
Q ss_pred ecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEE
Q 014903 237 FPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKA 315 (416)
Q Consensus 237 ~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~ 315 (416)
|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||+|||+|+++.|+||||+ +.|+||++ +++|++++
T Consensus 239 l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~-~~v~ip~g--~~~g~~~r 315 (380)
T PRK14297 239 LRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGE-VKYEVPAG--TQPGTVFR 315 (380)
T ss_pred EecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCc-EEEEECCC--cCCCCEEE
Confidence 999999854 567899999999999999999999999999999999999999999999997 78999998 89999999
Q ss_pred eCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCCC
Q 014903 316 INEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSR 360 (416)
Q Consensus 316 i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~~ 360 (416)
|+|+|||..+ ...+|||||+|+|+||+.|+++|+++|+++|+..
T Consensus 316 i~g~G~p~~~-~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~ 359 (380)
T PRK14297 316 LKGKGVPRVN-STGRGNQYVTVIVDIPKKLNSKQKEALTMFMEAS 359 (380)
T ss_pred EcCCCcCCCC-CCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 9999999764 3468999999999999999999999999999743
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-82 Score=635.08 Aligned_cols=342 Identities=31% Similarity=0.604 Sum_probs=300.8
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCccccccccccccccccccC---
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--- 82 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~--- 82 (416)
.+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||||||||+||+.||+||.+++..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 5799999999999999999999999999999999874 37999999999999999999999999988764211
Q ss_pred CCCCCC-C-------Cc--ccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeecccccc
Q 014903 83 GGGAGA-H-------DP--FDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSG 152 (416)
Q Consensus 83 ~gg~~~-~-------d~--~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G 152 (416)
++++++ . ++ .|+|++|||+++ ++.++..+++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~--~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G 160 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERR--TQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGG 160 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccC--CcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCc
Confidence 111111 1 11 277888887421 11111233457899999999999999999999999999999999999
Q ss_pred CCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCcc
Q 014903 153 KGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQN 231 (416)
Q Consensus 153 ~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 231 (416)
+|...+. ..+|+.|+|+|+++..++++||++++ +++|+.|+|+|+++. +.|+.|+|++++.+.++|+|.||||+++
T Consensus 161 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~ 237 (369)
T PRK14282 161 TGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCERCGGTGKIPG--EYCHECGGSGRIRRRVRTTVKIPAGVED 237 (369)
T ss_pred cCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCCCCCcceeCC--CCCCCCCCceeEEEEEEEEEEeCCCCCC
Confidence 9998765 46899999999999999999999765 779999999999975 8899999999999999999999999999
Q ss_pred CCeEeecCCcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccC
Q 014903 232 GQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKP 310 (416)
Q Consensus 232 G~~i~~~g~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~ 310 (416)
|++|+|+|+|++. .+..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|+||+| +++
T Consensus 238 G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g--~~~ 315 (369)
T PRK14282 238 GTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPG--TQP 315 (369)
T ss_pred CCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCC--cCC
Confidence 9999999999985 4667899999999999999999999999999999999999999999999999899999998 899
Q ss_pred CcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCCC
Q 014903 311 DSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSR 360 (416)
Q Consensus 311 g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~~ 360 (416)
|++++|+|+|||..+ ...+|||||+|+|.+|+.|+.+++++|++++...
T Consensus 316 g~~iri~GkG~p~~~-~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~ 364 (369)
T PRK14282 316 ETVFRLKGKGLPNMR-YGRRGDLIVNVHVEIPKRLSREERKLLKELAKKR 364 (369)
T ss_pred CCEEEECCCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999753 3468999999999999999999999999998643
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.4e-82 Score=632.38 Aligned_cols=338 Identities=36% Similarity=0.677 Sum_probs=297.6
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC---
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--- 83 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~--- 83 (416)
.+|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+|||||+||+.||+||+.++.++++
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 3699999999999999999999999999999999974 279999999999999999999999999987753211
Q ss_pred --CCCC-----CCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcc
Q 014903 84 --GGAG-----AHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSK 156 (416)
Q Consensus 84 --gg~~-----~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~ 156 (416)
++.+ +.++.|+|++|||++. ++.+.+.+.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|..
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~---~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~ 158 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNR---GQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSE 158 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCc---CCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccC
Confidence 1111 1134478999997421 11111234578999999999999999999999999999999999999998
Q ss_pred cCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeE
Q 014903 157 SGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKI 235 (416)
Q Consensus 157 ~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 235 (416)
.+. ..+|+.|+|+|+++. ++||+ +++++|+.|.|+|+++. ++|+.|+|++++.+.+.++|.||||+++|++|
T Consensus 159 ~~~~~~~C~~C~G~G~~~~----~~G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 231 (365)
T PRK14285 159 KGTSPSICNMCNGSGRVMQ----GGGFF-RVTTTCPKCYGNGKIIS--NPCKSCKGKGSLKKKETIELKIPAGIDDNQQI 231 (365)
T ss_pred CCCCCccCCCccCceeEEe----cCcee-EEeeecCCCCCcccccC--CCCCCCCCCCEEeccEEEEEEECCCCCCCCEE
Confidence 765 368999999997653 56787 78999999999999986 88999999999999999999999999999999
Q ss_pred eecCCcCCCCC-CCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEE
Q 014903 236 TFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYK 314 (416)
Q Consensus 236 ~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~ 314 (416)
+|+|+|++.++ ..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+.|.|.||+| +++|+++
T Consensus 232 ~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g--~~~g~~i 309 (365)
T PRK14285 232 KMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKG--TENDEQI 309 (365)
T ss_pred EEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCC--cCCCcEE
Confidence 99999999764 56899999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q 014903 315 AINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRP 361 (416)
Q Consensus 315 ~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~~~ 361 (416)
+|+|+|||..+. ..+|||||+|+|.||+.|+++++++|++++...+
T Consensus 310 rl~GkG~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~~ 355 (365)
T PRK14285 310 IIKNEGMPILHT-EKFGNLILIIKIKTPKNLNSNAIKLLENLSKELK 355 (365)
T ss_pred EECCCCccCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999997643 3579999999999999999999999999986443
No 16
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-81 Score=635.93 Aligned_cols=334 Identities=32% Similarity=0.603 Sum_probs=287.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC---
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--- 83 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~--- 83 (416)
.+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||+||++||+||+++..+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 5799999999999999999999999999999999973 389999999999999999999999999743221110
Q ss_pred ----CC-CC--------CCCcc---------------cccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCc
Q 014903 84 ----GG-AG--------AHDPF---------------DIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGT 135 (416)
Q Consensus 84 ----gg-~~--------~~d~~---------------diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~ 135 (416)
++ ++ ..+++ |+|++|||++ +++.+..++.++.|+.+.|.|||+|+|+|+
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~---~~~~~~~~~~~g~di~~~l~ltLee~~~G~ 164 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRG---GGSARPSRPRRGNDLETETTLDFVEAAKGV 164 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCC---CcccccCCCCCCCCeEEEEEEEHHHHhCCe
Confidence 00 00 01221 3445555421 111112334578999999999999999999
Q ss_pred eeeecceeeeeccccccCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcE
Q 014903 136 SKKLSLSRNVICSKCSGKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKV 214 (416)
Q Consensus 136 ~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 214 (416)
++++.+++.+.|++|+|+|..... ..+|+.|+|+|+++..+ | ++ +++++|+.|+|+|+++. +.|+.|+|+++
T Consensus 165 ~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~i~--~~C~~C~G~g~ 237 (392)
T PRK14279 165 TMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--G--AF-GFSEPCTDCRGTGSIIE--DPCEECKGTGV 237 (392)
T ss_pred EEEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--c--ce-EEEEecCCCCceeEEeC--CcCCCCCCCeE
Confidence 999999999999999999998765 46899999999876653 3 33 57799999999999986 88999999999
Q ss_pred EEEeEEEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEecc
Q 014903 215 VQEKKVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHL 293 (416)
Q Consensus 215 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tl 293 (416)
+.+.+.++|.||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||
T Consensus 238 v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~l 317 (392)
T PRK14279 238 TTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTL 317 (392)
T ss_pred EEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcC
Confidence 9999999999999999999999999999865 556799999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 294 DGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 294 dG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
||+ +.|+||+| +++|++++|+|+|||.. ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 318 dg~-i~v~Ip~g--~~~g~~iri~g~G~p~~--~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 318 DGP-VGVKVPAG--TADGRILRVRGRGVPKR--SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA 378 (392)
T ss_pred Cce-EEEEECCC--CCCCCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 998 88999998 89999999999999963 346899999999999999999999999999963
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-81 Score=635.85 Aligned_cols=342 Identities=34% Similarity=0.659 Sum_probs=299.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccC---C
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM---G 83 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~---~ 83 (416)
.+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|+.||+||+++++.+. +
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 3699999999999999999999999999999999974 38999999999999999999999999998775311 0
Q ss_pred -CC--CCCCCccccc---ccccCCCC-C------------CCCCCCc--cccccCcceeeeeEeeeeeeecCceeeecce
Q 014903 84 -GG--AGAHDPFDIF---SSFFGGSP-F------------GGGSSRG--RRQRRGEDVVHPLKVSLEDLYLGTSKKLSLS 142 (416)
Q Consensus 84 -gg--~~~~d~~diF---~~fFGg~~-~------------~g~~~~~--~~~~~~~di~~~l~vsLee~~~G~~~~~~~~ 142 (416)
++ +++.++.|+| ++|||+++ + +++..+. ..+.++.|+.+.|.|||||+|+|+++++.++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~ 161 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEE
Confidence 11 0112333444 57887421 1 1110111 1224689999999999999999999999999
Q ss_pred eeeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEE
Q 014903 143 RNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLE 222 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~ 222 (416)
+.+.|+.|+|+|...+...+|+.|+|+|+++..+++++|++++ +++|+.|.|+|+++. ++|+.|+|++++.+.++++
T Consensus 162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~ 238 (397)
T PRK14281 162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPTCGGEGRVVK--DRCPACYGEGIKQGEVTVK 238 (397)
T ss_pred eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCCCcceeeeeC--CCCCCCCCCccEecceEEE
Confidence 9999999999999887677899999999999999999998765 779999999999986 7899999999999999999
Q ss_pred EEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEE
Q 014903 223 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIK 301 (416)
Q Consensus 223 V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~ 301 (416)
|.||||+++|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|+
T Consensus 239 V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~-i~v~ 317 (397)
T PRK14281 239 VTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGA-VKLT 317 (397)
T ss_pred EecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCcc-EEEE
Confidence 99999999999999999999865 568999999999999999999999999999999999999999999999997 7899
Q ss_pred eCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 302 SNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 302 ~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
||++ +++|++++|+|+|||..+ ...+|||||+|+|.||+.|+++|+++|++|++.
T Consensus 318 ip~g--~~~G~~~ri~g~G~P~~~-~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~ 372 (397)
T PRK14281 318 IPAG--TQPETMLRIPGKGIGHLR-GSGRGDQYVRVNVFVPKEVSHQDKELLKELKKS 372 (397)
T ss_pred eCCc--cCCCcEEEEcCCCCCCCC-CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 9998 899999999999999764 346899999999999999999999999999963
No 18
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.9e-81 Score=631.54 Aligned_cols=336 Identities=34% Similarity=0.629 Sum_probs=292.4
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC--CC
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG--GG 85 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~--gg 85 (416)
.|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||+||+.||+||++++..+.+ ++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 489999999999999999999999999999999984 379999999999999999999999999987642210 11
Q ss_pred CCC--------------C----CcccccccccCCCC--CCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeee
Q 014903 86 AGA--------------H----DPFDIFSSFFGGSP--FGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNV 145 (416)
Q Consensus 86 ~~~--------------~----d~~diF~~fFGg~~--~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~ 145 (416)
+++ . .+.|+|++|||+++ |++ .....++.++.|+.+.|.|||||+|+|+++++.+++.+
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~ 159 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGM-RGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYK 159 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccc-cccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeec
Confidence 110 0 11367888887422 111 11112345789999999999999999999999999999
Q ss_pred eccccccCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEE
Q 014903 146 ICSKCSGKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVI 224 (416)
Q Consensus 146 ~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~ 224 (416)
.|++|+|+|...+. ..+|+.|+|+|+++..+ |++ +++.+|+.|+|+|+++. +.|+.|+|++++.+.++|+|.
T Consensus 160 ~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~----G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~ 232 (391)
T PRK14284 160 SCDACSGSGANSSQGIKVCDRCKGSGQVVQSR----GFF-SMASTCPECGGEGRVIT--DPCSVCRGQGRIKDKRSVHVH 232 (391)
T ss_pred cCCCCcccccCCCCCCeecCccCCeeEEEEEe----ceE-EEEEECCCCCCCCcccC--CcCCCCCCcceecceEEEEEE
Confidence 99999999998765 46899999999877543 454 47889999999999986 889999999999999999999
Q ss_pred EcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccC-CcEEEEEe
Q 014903 225 VEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLD-GRQLLIKS 302 (416)
Q Consensus 225 Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tld-G~~l~i~~ 302 (416)
||||+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||| |+.|.|+|
T Consensus 233 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~I 312 (391)
T PRK14284 233 IPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTI 312 (391)
T ss_pred ECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEE
Confidence 999999999999999999976 5678999999999999999999999999999999999999999999999 67899999
Q ss_pred CCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 303 NPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 303 ~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
|++ +++|++++|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 313 p~g--~~~g~~~~i~g~G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~ 365 (391)
T PRK14284 313 PEG--IQSGTILKVRGQGFPNVHG-KGRGDLLVRISVETPQNLSEEQKELLRQFAA 365 (391)
T ss_pred CCc--cCCCeEEEECCCCCCCCCC-CCCCcEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 988 8999999999999997643 4689999999999999999999999999985
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.8e-80 Score=621.88 Aligned_cols=339 Identities=38% Similarity=0.692 Sum_probs=301.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCC---CC
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG---GA 86 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g---g~ 86 (416)
|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+||||+.+|+.||+||++++..+.++ +.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~ 80 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGF 80 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCc
Confidence 79999999999999999999999999999999974 3899999999999999999999999999887642111 11
Q ss_pred ------CCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-
Q 014903 87 ------GAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA- 159 (416)
Q Consensus 87 ------~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~- 159 (416)
++.++.|+|++|||++. +++..+...++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|.....
T Consensus 81 ~~~~~~~~~~~~~~f~~~fg~~~-g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 159 (354)
T TIGR02349 81 NGFDIGFFGDFGDIFGDFFGGGG-GSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTD 159 (354)
T ss_pred CCccccCcCchhhhHHHHhccCc-ccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCC
Confidence 11234588999998421 1111112334678999999999999999999999999999999999999998765
Q ss_pred eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecC
Q 014903 160 SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 160 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 239 (416)
..+|+.|+|+|+++..++++||++++ +++|+.|.|+|+++. ..|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 236 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPTCGGEGKIIK--EPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSG 236 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEE-EEecCCCCCcceecC--CCCCCCCCCcEecccceEEEEECCCCCCCCEEEEec
Confidence 46899999999999999999999886 679999999999986 789999999999999999999999999999999999
Q ss_pred CcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 240 EADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 240 ~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
+|++. .+..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+|||| .+.|.+|++ +++|++++|+|
T Consensus 237 ~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g 313 (354)
T TIGR02349 237 KGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDG-DVKLKIPAG--TQSGTVFRLKG 313 (354)
T ss_pred CccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCc-eEEEEECCc--ccCCcEEEECC
Confidence 99984 466789999999999999999999999999999999999999999999999 589999988 89999999999
Q ss_pred CCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 319 EGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 319 ~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
+|||..+. ..+|||||+|+|.||+.|+++|+++|+++|..
T Consensus 314 ~G~p~~~~-~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 314 KGVPRLRG-NGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99997643 36899999999999999999999999999853
No 20
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.5e-80 Score=623.91 Aligned_cols=336 Identities=32% Similarity=0.614 Sum_probs=291.5
Q ss_pred CCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccc----cccccc
Q 014903 7 KKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQ----YGEDAL 78 (416)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~----~G~~g~ 78 (416)
.|....|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|++||+ ||++++
T Consensus 4 ~~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 4 KDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred hhccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 34456899999999999999999999999999999999974 3899999999999999999999999 999887
Q ss_pred cccCC-C-CCCC-CCcc--------------------cccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCc
Q 014903 79 KEGMG-G-GAGA-HDPF--------------------DIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGT 135 (416)
Q Consensus 79 ~~g~~-g-g~~~-~d~~--------------------diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~ 135 (416)
..+.+ + ++++ +++. |+|++|||+ ++ +.++++++.|+.+.|.|||||+|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~-----~~-~~~~~~~g~di~~~l~lsLee~~~G~ 157 (389)
T PRK14295 84 RPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNR-----GG-RRTQPRRGADVESEVTLSFTEAIDGA 157 (389)
T ss_pred ccCCCCCCCCCCCcccccccccccccccccccccchhhhhcccccC-----CC-CCCCCCCCCCEEEEEEEEHHHHhCCc
Confidence 53211 1 0010 1112 344444432 11 12234578999999999999999999
Q ss_pred eeeecceeeeeccccccCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcE
Q 014903 136 SKKLSLSRNVICSKCSGKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKV 214 (416)
Q Consensus 136 ~~~~~~~r~~~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~ 214 (416)
++++.+++.+.|++|+|+|.+.+. ..+|+.|+|+|+++..+ | ++ +++.+|+.|.|+|+++. +.|+.|+|+++
T Consensus 158 ~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g--~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~ 230 (389)
T PRK14295 158 TVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--G--GF-SLSEPCPDCKGRGLIAD--DPCLVCKGSGR 230 (389)
T ss_pred eEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--c--ce-EEEEecCCCcceeEEec--cCCCCCCCCce
Confidence 999999999999999999998775 46899999999877654 3 33 46789999999999986 88999999999
Q ss_pred EEEeEEEEEEEcCCCccCCeEeecCCcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEecc
Q 014903 215 VQEKKVLEVIVEKGMQNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHL 293 (416)
Q Consensus 215 v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tl 293 (416)
+.+.+.++|.||+|+++|++|+|+|+|++. ++..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||
T Consensus 231 ~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tl 310 (389)
T PRK14295 231 AKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTL 310 (389)
T ss_pred EeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECC
Confidence 999999999999999999999999999985 4667899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 294 DGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 294 dG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
||+.|.|.||+| +++|++++|+|+|||.. +..+|||||+|+|.||+.|+++|+++|++++..
T Consensus 311 dG~~~~v~ip~g--~~~g~~iri~G~G~p~~--~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~ 372 (389)
T PRK14295 311 GGPPVTVKLPPG--TPNGRVLRVRGKGAVRK--DGTRGDLLVTVEVAVPKDLSGKAREALEAFREA 372 (389)
T ss_pred CCCEEEEEECCc--cCCCcEEEECCCCcCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999899999998 89999999999999964 346899999999999999999999999999863
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-80 Score=622.75 Aligned_cols=336 Identities=34% Similarity=0.630 Sum_probs=292.6
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC-CC
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~-gg 85 (416)
..|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||+.||+||+++++++.+ ++
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 4799999999999999999999999999999999974 279999999999999999999999999988763211 11
Q ss_pred C-CC---C-CcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCce
Q 014903 86 A-GA---H-DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS 160 (416)
Q Consensus 86 ~-~~---~-d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~ 160 (416)
. +. + ++.|+|++|||+++. ++.+..++.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|......
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~--~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~ 160 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGG--GSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTS 160 (373)
T ss_pred cccccccccchHHHHHHHhhccCc--ccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCC
Confidence 1 11 1 123677777763211 111122346789999999999999999999999999999999999999987653
Q ss_pred -eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecC
Q 014903 161 -MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 161 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 239 (416)
.+|+.|+|+|+++.. . |++ +++++|+.|+|+|+++. +.|+.|+|++++.+.+.++|.||+|+++|++|+|+|
T Consensus 161 ~~~C~~C~G~G~v~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 233 (373)
T PRK14301 161 PETCRHCGGSGQVRQS--Q--GFF-QIAVPCPVCRGEGRVIT--HPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRG 233 (373)
T ss_pred CcccCCccCeeEEEEE--e--eeE-EEEEeCCCCCceeeecC--CCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEec
Confidence 689999999987643 3 454 55999999999999986 889999999999999999999999999999999999
Q ss_pred CcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 240 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 240 ~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
+|++.+ +..+|||||+|++++|+.|+|+|+||+++++|||.+||+|+++.|+||||+ +.|.||++ +++|++++|+|
T Consensus 234 ~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-i~v~ip~g--~~~g~~~ri~g 310 (373)
T PRK14301 234 EGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDP-VTLDIPKG--TQSGEVFRLRG 310 (373)
T ss_pred cccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCcc-EEEEECCC--cCCCcEEEEcC
Confidence 999854 567899999999999999999999999999999999999999999999998 89999988 89999999999
Q ss_pred CCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 319 EGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 319 ~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
+|||..+ ...+|||||+|+|.||+.|+++|+++|++++..
T Consensus 311 ~G~p~~~-~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~ 350 (373)
T PRK14301 311 KGLPYLG-SSQKGDLLVEVSVVTPTKLTKRQEELLREFEAL 350 (373)
T ss_pred CCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999764 346899999999999999999999999999853
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-80 Score=620.87 Aligned_cols=337 Identities=32% Similarity=0.574 Sum_probs=294.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCCCC-
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG- 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~gg- 85 (416)
.+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|+.||+||+++++++..++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 5799999999999999999999999999999999974 38999999999999999999999999998876321111
Q ss_pred CCC----CCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-e
Q 014903 86 AGA----HDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA-S 160 (416)
Q Consensus 86 ~~~----~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~ 160 (416)
+++ .++.|+|++|||.++++ +++....+.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|..... .
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~g~~~-~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 161 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGFGGGR-RGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP 161 (366)
T ss_pred CccccchhhhhhhHHHhhccCCCc-CCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence 111 23347899999721111 11111234578999999999999999999999999999999999999998765 4
Q ss_pred eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCC
Q 014903 161 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGE 240 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~ 240 (416)
.+|+.|+|+|+++.. + |++ +++++|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+
T Consensus 162 ~~C~~C~G~G~~~~~--~--G~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~ 234 (366)
T PRK14294 162 TTCPQCGGSGQVTQS--Q--GFF-SIRTTCPRCRGMGKVIV--SPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGE 234 (366)
T ss_pred ccCCCcCCeEEEEEE--e--eeE-EEEeeCCCCCCcCeecC--cCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccC
Confidence 689999999987643 3 455 47999999999999986 8899999999999999999999999999999999999
Q ss_pred cCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCC
Q 014903 241 ADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEE 319 (416)
Q Consensus 241 G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~ 319 (416)
|++. ++..+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+ +.|.||+| +++|++++|+|+
T Consensus 235 G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~-~~v~ip~g--~~~g~~iri~G~ 311 (366)
T PRK14294 235 GEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGE-RELKIPKG--TQPGDIFRFKGK 311 (366)
T ss_pred ccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCc-EEEEECCC--cCCCCEEEECCC
Confidence 9985 4678999999999999999999999999999999999999999999999997 68899998 899999999999
Q ss_pred CccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 320 GMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 320 GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
|||..+. ..+|||||+|+|.||+.|+++++++|++++..
T Consensus 312 G~p~~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~ 350 (366)
T PRK14294 312 GIPSLRG-GGRGDQIIEVEVKVPTRLTKKQEELLTEFARL 350 (366)
T ss_pred CCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9997643 36899999999999999999999999999953
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.3e-79 Score=613.98 Aligned_cols=342 Identities=33% Similarity=0.602 Sum_probs=298.4
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCccccccccccccccccccCCC-C
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-G 85 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g-g 85 (416)
.|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|++||+||+.+++++.++ +
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 699999999999999999999999999999999974 2899999999999999999999999999877532111 0
Q ss_pred -C---CCCCcccccccccCCCC----CCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCccc
Q 014903 86 -A---GAHDPFDIFSSFFGGSP----FGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKS 157 (416)
Q Consensus 86 -~---~~~d~~diF~~fFGg~~----~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~ 157 (416)
+ ++.++.|+|+.|||++. +++.++..+.++++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 0 12355688999998421 011011111223478999999999999999999999999999999999999987
Q ss_pred CceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEee
Q 014903 158 GASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITF 237 (416)
Q Consensus 158 ~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 237 (416)
....+|+.|+|+|+++..++.|+ +.++.+.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+.+|++|+|
T Consensus 163 ~~~~~C~~C~G~G~~~~~~~~g~-~~~~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~ 239 (365)
T PRK14290 163 GKLITCPTCHGTGQQRIVRGQGF-FRMVTVTTCRTCGGRGRIPE--EKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRV 239 (365)
T ss_pred CCCccCCCCCCcCEEEEEeccCe-EEEEEEEeCCCCCCceeEcc--CCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEE
Confidence 76679999999998877775554 34667899999999999875 8999999999999999999999999999999999
Q ss_pred cCCcCCCCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeC
Q 014903 238 PGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAIN 317 (416)
Q Consensus 238 ~g~G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~ 317 (416)
+|+|++ +++.+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|++|+ +.|.||++ +++|++++|+
T Consensus 240 ~g~G~~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~-i~V~Ip~g--~~~g~~iri~ 315 (365)
T PRK14290 240 KGKGQS-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREK-YNLKIPEG--TQPGEVLKIK 315 (365)
T ss_pred ccccCC-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCce-EEEEECCc--cCCCcEEEEC
Confidence 999996 6888999999999999999999999999999999999999999999999996 89999987 8999999999
Q ss_pred CCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCCCC
Q 014903 318 EEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPSRP 361 (416)
Q Consensus 318 g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~~~ 361 (416)
|+|||..+. ..+|||||+|+|.+|+.|+++++++|+++|+.+.
T Consensus 316 g~G~p~~~~-~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~~ 358 (365)
T PRK14290 316 GAGMPHLNG-HGSGDLLVRINVEVPKRLTSKQKELIREFFDIKE 358 (365)
T ss_pred CCCCCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 999997643 3689999999999999999999999999997554
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-79 Score=616.03 Aligned_cols=337 Identities=32% Similarity=0.614 Sum_probs=295.7
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCC
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG 84 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g 84 (416)
|+.++|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+|||||.||++||+||++++.+....
T Consensus 1 ~~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~ 80 (378)
T PRK14283 1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQE 80 (378)
T ss_pred CCCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccc
Confidence 5667899999999999999999999999999999999974 3899999999999999999999999999876521100
Q ss_pred C----CCCC--------Ccccccccc-cCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccc
Q 014903 85 G----AGAH--------DPFDIFSSF-FGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCS 151 (416)
Q Consensus 85 g----~~~~--------d~~diF~~f-FGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~ 151 (416)
+ .... ++.++|+.| ||+ ++ ..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~f~~~~fgg-----~~--~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~ 153 (378)
T PRK14283 81 DIFNNINFEDIFQGFGFGIGNIFDMFGFGG-----GS--RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCN 153 (378)
T ss_pred ccccccCccccccccccchhhhccccccCC-----CC--CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCC
Confidence 0 0000 112344444 331 11 12245789999999999999999999999999999999999
Q ss_pred cCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCc
Q 014903 152 GKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQ 230 (416)
Q Consensus 152 G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 230 (416)
|+|...+. ..+|+.|+|+|+++..+++++|+++ .+.+|+.|.|+|+.+. +.|..|+|++++.+.+.++|.||||++
T Consensus 154 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~IppG~~ 230 (378)
T PRK14283 154 GSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMM-NVTTCPDCQGEGKIVE--KPCSNCHGKGVVRETKTISVKIPAGVE 230 (378)
T ss_pred ccccCCCCCCccCCCcCCccEEEEEEeccCceEE-EEEECCCCCccceecC--CCCCCCCCceeeccceeEEEEECCCCC
Confidence 99988765 4689999999999999999999876 4579999999999975 889999999999999999999999999
Q ss_pred cCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCcccc
Q 014903 231 NGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVK 309 (416)
Q Consensus 231 ~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~ 309 (416)
+|++|+|+|+|++.+ +..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||| .|.|.+|+| ++
T Consensus 231 ~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG-~i~v~ip~g--~~ 307 (378)
T PRK14283 231 TGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDG-PVELKIPAG--TQ 307 (378)
T ss_pred CCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCc-eEEEEeCCC--CC
Confidence 999999999999854 56789999999999999999999999999999999999999999999999 589999988 78
Q ss_pred CCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 310 PDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 310 ~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
+|++++|+|+|||... ...+|||||+|+|.||+.|+++|+++|++++.
T Consensus 308 ~g~~~ri~g~G~p~~~-~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~ 355 (378)
T PRK14283 308 SGTTFRLKGHGMPSLR-WSGKGNLYVKVKVVVPKKLSPKQKELLREFAS 355 (378)
T ss_pred CCCEEEECCCCCCCCC-CCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHh
Confidence 9999999999999764 33689999999999999999999999999985
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.3e-79 Score=613.35 Aligned_cols=334 Identities=38% Similarity=0.701 Sum_probs=292.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC-CC
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~-gg 85 (416)
.+|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||.+|+.||+||++++..+.+ ++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 4799999999999999999999999999999999974 279999999999999999999999999988763221 11
Q ss_pred C----CCCC-cccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCce
Q 014903 86 A----GAHD-PFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS 160 (416)
Q Consensus 86 ~----~~~d-~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~ 160 (416)
. ++.+ +.|+|++|||+++ + .+.++++++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|......
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~---~-~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~ 158 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGR---G-GGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTS 158 (371)
T ss_pred CCCccccccchhhhhhhhccCCc---c-ccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCC
Confidence 1 1123 2367777776321 1 1112346789999999999999999999999999999999999999987654
Q ss_pred -eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecC
Q 014903 161 -MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 161 -~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 239 (416)
..|+.|+|+|+++..+ ||+ +++.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 159 ~~~C~~C~G~G~~~~~~----g~~-~~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 231 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQ----GFF-TVQQTCPTCHGRGKIIK--DPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSG 231 (371)
T ss_pred CccCCCCCCeeEEEEee----ceE-EEEEeCCCCCCceeECC--CCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEec
Confidence 6899999999876543 455 47889999999999875 889999999999999999999999999999999999
Q ss_pred CcCC-CCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 240 EADE-APDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 240 ~G~~-~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
+|++ .++..+|||||+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|||| .+.|.+|++ +++|++++|+|
T Consensus 232 ~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG-~i~v~ip~g--~~~g~~~~i~g 308 (371)
T PRK10767 232 EGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDG-RVKLKIPEG--TQTGKLFRLRG 308 (371)
T ss_pred CccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCC-cEEEEeCCC--CCCCCEEEECC
Confidence 9998 4567889999999999999999999999999999999999999999999999 589999998 89999999999
Q ss_pred CCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 319 EGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 319 ~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
+|||..+. ..+|||||+|+|.||+.|+++++++|++++..
T Consensus 309 ~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~~~~ll~~l~~~ 348 (371)
T PRK10767 309 KGVKSVRS-GARGDLYCQVVVETPVNLTKRQKELLEEFEES 348 (371)
T ss_pred CCcCCCCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99997643 46899999999999999999999999999963
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-78 Score=610.51 Aligned_cols=336 Identities=33% Similarity=0.622 Sum_probs=291.4
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccC--C--C
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--G--G 84 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~--~--g 84 (416)
+|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+|+.+|+.||+||++++..+. + +
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g 82 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGG 82 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCC
Confidence 699999999999999999999999999999999874 37999999999999999999999999998775321 1 1
Q ss_pred C-CCC-CCcccccccccCCCCCCCCC-CCc-cccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-
Q 014903 85 G-AGA-HDPFDIFSSFFGGSPFGGGS-SRG-RRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA- 159 (416)
Q Consensus 85 g-~~~-~d~~diF~~fFGg~~~~g~~-~~~-~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~- 159 (416)
+ +++ .++.++|+.||++. |++++ +.. ..+.++.|+.+.|.+||+|+|+|+++++.+++.+.|+.|+|+|...+.
T Consensus 83 ~~~~~~~~~~~~f~~~f~~~-~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~ 161 (372)
T PRK14300 83 NHGGFHPDINDIFGDFFSDF-MGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET 161 (372)
T ss_pred CCCccccchhhhHHHHHHhh-cCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence 1 111 12335555555421 11111 111 123578999999999999999999999999999999999999998765
Q ss_pred eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecC
Q 014903 160 SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 160 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 239 (416)
..+|+.|+|+|+++.. .||++ ++.+|+.|.|+|+++. ++|+.|+|++++.+.+.++|.||||+++|++|+|+|
T Consensus 162 ~~~C~~C~G~G~~~~~----~g~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g 234 (372)
T PRK14300 162 VTTCDACSGVGATRMQ----QGFFT-IEQACHKCQGNGQIIK--NPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTG 234 (372)
T ss_pred CccCCCccCeEEEEEe----eceEE-EEEeCCCCCccceEeC--CCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEec
Confidence 4689999999987653 25655 7889999999999986 889999999999999999999999999999999999
Q ss_pred CcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 240 EADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 240 ~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
+|++. ++..+|||||+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+.|.|.||+| +++|++++|+|
T Consensus 235 ~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g--~~~g~~iri~g 312 (372)
T PRK14300 235 EGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAG--TQNGDQLRLRS 312 (372)
T ss_pred cccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCc--cCCCcEEEECC
Confidence 99984 5678999999999999999999999999999999999999999999999998899999998 89999999999
Q ss_pred CCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 319 EGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 319 ~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
+|||..+ ...+|||||+|+|.||++|+++|+++|++++.
T Consensus 313 ~G~p~~~-~~~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~ 351 (372)
T PRK14300 313 KGMSKMR-STIRGDMLTHIHVEVPKNLSKRQRELLEEFKK 351 (372)
T ss_pred CCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 9999753 34689999999999999999999999999985
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-78 Score=611.09 Aligned_cols=339 Identities=34% Similarity=0.653 Sum_probs=290.8
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCC---C
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---G 84 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~---g 84 (416)
.+|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.||++||+||++++..+.+ +
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~ 81 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQG 81 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcccc
Confidence 4699999999999999999999999999999999975 389999999999999999999999999987653211 1
Q ss_pred --CC---CCCCccccccccc---CCC-CCCCC----CCC--ccccccCcceeeeeEeeeeeeecCceeeecceeeeeccc
Q 014903 85 --GA---GAHDPFDIFSSFF---GGS-PFGGG----SSR--GRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSK 149 (416)
Q Consensus 85 --g~---~~~d~~diF~~fF---Gg~-~~~g~----~~~--~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~ 149 (416)
+. .+.++.|+|++|| |.+ .|++. .++ ..++.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.
T Consensus 82 ~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~ 161 (382)
T PRK14291 82 QEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEA 161 (382)
T ss_pred ccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCC
Confidence 10 1123446677764 211 12210 110 122457899999999999999999999999999999999
Q ss_pred cccCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCC
Q 014903 150 CSGKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKG 228 (416)
Q Consensus 150 C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G 228 (416)
|+|+|...+. ..+|+.|+|+|+++.. . ++++++++|+.|+|+|. + ++.|+.|+|.+++.+.++|+|.||||
T Consensus 162 C~G~G~~~~~~~~~C~~C~G~G~~~~~--~---g~~~~~~~C~~C~G~G~-~--~~~C~~C~G~g~v~~~~~l~V~Ip~G 233 (382)
T PRK14291 162 CGGTGYDPGSGEKVCPTCGGSGEIYQR--G---GFFRISQTCPTCGGEGV-L--REPCSKCNGRGLVIKKETIKVRIPPG 233 (382)
T ss_pred CccccCCCCCCCccCCCCCCceEEEEe--c---ceEEEEecCCCCCCceE-E--ccCCCCCCCCceEEeeeEEEEEeCCC
Confidence 9999998765 4689999999987654 1 34667899999999995 4 47899999999999999999999999
Q ss_pred CccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCcc
Q 014903 229 MQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEV 307 (416)
Q Consensus 229 ~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~v 307 (416)
+++|++|+|+|+|++.+ ++.+|||||+|++++|+.|+|+|+||++++.|||.|||+|+++.|+||||+.|.|.||+|
T Consensus 234 ~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g-- 311 (382)
T PRK14291 234 VDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPG-- 311 (382)
T ss_pred CCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCc--
Confidence 99999999999999854 788999999999999999999999999999999999999999999999999899999998
Q ss_pred ccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCC--CCC------HHHHHHHHHHCCCC
Q 014903 308 VKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPD--SLT------PDQVKALEAILPSR 360 (416)
Q Consensus 308 i~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~--~l~------~~~~~~L~~~lp~~ 360 (416)
+++|++++|+|+|||..+. ..+|||||+|+|.||+ .|+ ++|+++|++++...
T Consensus 312 ~~~G~~i~i~G~G~p~~~~-~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 312 TKEGDKIRVPGKGMPRLKG-SGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred cCCCCEEEECCCCCCCCCC-CCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 8999999999999997643 3689999999999998 499 99999998887543
No 28
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.1e-78 Score=608.81 Aligned_cols=343 Identities=32% Similarity=0.618 Sum_probs=301.4
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCC-CC-
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG- 85 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~-gg- 85 (416)
..|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|++||+||++++.++.+ ++
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~ 81 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDM 81 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCc
Confidence 3699999999999999999999999999999999975 389999999999999999999999999987753211 11
Q ss_pred CCCCCcccccccccCCCCCCCC---CCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc-ee
Q 014903 86 AGAHDPFDIFSSFFGGSPFGGG---SSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA-SM 161 (416)
Q Consensus 86 ~~~~d~~diF~~fFGg~~~~g~---~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~-~~ 161 (416)
++..++.|+|++|||+.+.+++ +.+.+++.++.|+.+.|.|||||+|+|+++++.+++.+.|+.|+|+|..... ..
T Consensus 82 ~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~ 161 (374)
T PRK14293 82 GDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPT 161 (374)
T ss_pred ccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCe
Confidence 1112234789999974111011 0112234578999999999999999999999999999999999999998765 46
Q ss_pred eCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCc
Q 014903 162 KCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEA 241 (416)
Q Consensus 162 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G 241 (416)
+|+.|+|+|+++..++++||++++ +.+|+.|.|+|+++. +.|+.|+|++++.+.+.++|.||||+++|++|+|+|+|
T Consensus 162 ~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G 238 (374)
T PRK14293 162 TCSTCGGAGQVRRATRTPFGSFTQ-VSECPTCNGTGQVIE--DPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEG 238 (374)
T ss_pred eCCCCCCcceEEEEEecCcceEEE-EeeCCCCCcceeEec--cCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCc
Confidence 899999999999999999998876 689999999999985 88999999999999999999999999999999999999
Q ss_pred CCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCC
Q 014903 242 DEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEG 320 (416)
Q Consensus 242 ~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~G 320 (416)
++. ++..+|||||+|++++|+.|+|+|+||+++++|||.|||+|+++.|+||||+ +.|.+|++ +++|++++|+|+|
T Consensus 239 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~-~~i~ip~~--~~~g~~~ri~g~G 315 (374)
T PRK14293 239 DAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGP-VELTIPAG--TQPNTVLTLENKG 315 (374)
T ss_pred cCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCC-EEEEeCCC--CCCCCEEEECCCC
Confidence 985 4567899999999999999999999999999999999999999999999997 78899987 8999999999999
Q ss_pred ccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 321 MPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 321 mP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
||...+.+.+|||||+|+|+||+.|+++++++|+++|..
T Consensus 316 ~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~ 354 (374)
T PRK14293 316 VPRLGNPVARGDHLITVKVKIPTRISDEERELLEKLAKI 354 (374)
T ss_pred CCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 998655456899999999999999999999999999964
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-77 Score=605.65 Aligned_cols=345 Identities=34% Similarity=0.676 Sum_probs=298.5
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCccccccccccccccccccCC
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG 83 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~ 83 (416)
|+...|||++|||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||.+|++||+||+++++.+.+
T Consensus 1 ~~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~ 80 (386)
T PRK14289 1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAG 80 (386)
T ss_pred CCccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCC
Confidence 3456899999999999999999999999999999999974 389999999999999999999999999987753211
Q ss_pred -CCC--CCCCccccccc---ccCCC--CCC-----CCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeecccc
Q 014903 84 -GGA--GAHDPFDIFSS---FFGGS--PFG-----GGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKC 150 (416)
Q Consensus 84 -gg~--~~~d~~diF~~---fFGg~--~~~-----g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C 150 (416)
+++ +..++.++|+. +|++. +++ +++.....+.++.|+.+.|.|||+|+|+|+++++.+++.+.|+.|
T Consensus 81 ~~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C 160 (386)
T PRK14289 81 GGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHC 160 (386)
T ss_pred CCCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCC
Confidence 111 11233344333 25421 110 000111224578999999999999999999999999999999999
Q ss_pred ccCCcccCc-eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCC
Q 014903 151 SGKGSKSGA-SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGM 229 (416)
Q Consensus 151 ~G~G~~~~~-~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~ 229 (416)
+|+|..... ..+|+.|+|+|+++..+++++|+++ ++.+|+.|.|+|+++. ..|+.|+|++++.+.+.++|.||+|+
T Consensus 161 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~ 237 (386)
T PRK14289 161 HGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQ-TQSTCPTCNGEGKIIK--KKCKKCGGEGIVYGEEVITVKIPAGV 237 (386)
T ss_pred CCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEE-EEEecCCCCccccccC--cCCCCCCCCcEEeeeEEEEEEeCCCC
Confidence 999988654 4689999999999999999999986 4999999999999986 88999999999999999999999999
Q ss_pred ccCCeEeecCCcCCC-CCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccc
Q 014903 230 QNGQKITFPGEADEA-PDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVV 308 (416)
Q Consensus 230 ~~G~~i~~~g~G~~~-~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi 308 (416)
++|++|+|+|+|++. ++..+|||+|+|++++|+.|+|+|+||++++.|+|.+||+|+++.|+||||+ +.|.||+| +
T Consensus 238 ~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~-i~v~ip~g--~ 314 (386)
T PRK14289 238 AEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGK-AKVKIEAG--T 314 (386)
T ss_pred CCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCce-EEEEECCc--c
Confidence 999999999999985 4678999999999999999999999999999999999999999999999997 89999998 7
Q ss_pred cCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 309 KPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 309 ~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
++|++++|+|+|||..++ ..+|||||+|+|.||+.|+++|+++|++|+..
T Consensus 315 ~~g~~~ri~g~G~p~~~~-~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~ 364 (386)
T PRK14289 315 QPGKVLRLRNKGLPSVNG-YGTGDLLVNVSVYIPETLSKEEKQTLEKMENS 364 (386)
T ss_pred CCCcEEEECCCCcCCCCC-CCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhh
Confidence 999999999999997543 36899999999999999999999999999974
No 30
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3e-77 Score=601.60 Aligned_cols=338 Identities=33% Similarity=0.667 Sum_probs=298.7
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCC-CC--
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-GG-- 85 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~-gg-- 85 (416)
.|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||.+|+.||+||++++.++.+ ++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~ 81 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG 81 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence 389999999999999999999999999999999975 389999999999999999999999999876421111 11
Q ss_pred CCCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc--eeeC
Q 014903 86 AGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA--SMKC 163 (416)
Q Consensus 86 ~~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~--~~~C 163 (416)
+.++++.|+|++|||+++++++ ...+++.++.|+.+.+.+||+|+|+|+++++.+++.+.|++|+|+|..... ..+|
T Consensus 82 ~~~~d~~d~f~~~fg~~~~~~~-~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C 160 (371)
T PRK14292 82 GMGFDPMDIFEQLFGGAGFGGG-RGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTC 160 (371)
T ss_pred ccCCChHHHHHHhhCCCCcCCC-CCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccC
Confidence 1123556899999985322211 111234578999999999999999999999999999999999999987654 4789
Q ss_pred CCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCC
Q 014903 164 SGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADE 243 (416)
Q Consensus 164 ~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~ 243 (416)
+.|+|+|+++..+++.+|++++ +.+|+.|.|+|..+. ..|+.|+|++++.+.+.++|.||+|+++|++|+|+|+|++
T Consensus 161 ~~C~G~G~~~~~~~~~~g~~~~-~~~C~~C~G~G~~~~--~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~ 237 (371)
T PRK14292 161 PTCRGAGAVRAQARTIFGVVET-QQPCPTCRGEGQIIT--DPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNE 237 (371)
T ss_pred CCCCCccEEEEEEeccCceEEE-eeecCCCcccceecC--CCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCC
Confidence 9999999999888888888764 789999999999875 8999999999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 244 APDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 244 ~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
.+++. |||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||+. .|.+|+| +++|++++|+|+|||.
T Consensus 238 ~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~-~v~ip~g--~~~g~~~~i~g~G~p~ 313 (371)
T PRK14292 238 GPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQ-VIEVKPG--TQHGDLHRLRGQGMPR 313 (371)
T ss_pred CCCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCE-EEecCCC--cCCCcEEEECCCCCCC
Confidence 77665 999999999999999999999999999999999999999999999984 7899998 8999999999999997
Q ss_pred CCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 324 YQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 324 ~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
.++ ..+|||||+|+|.||+.|+++|+++|++++.
T Consensus 314 ~~~-~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~ 347 (371)
T PRK14292 314 LQG-AGTGDLIVEYEIAVPKQLSPEAREALEAYAR 347 (371)
T ss_pred CCC-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 643 3579999999999999999999999999984
No 31
>PRK14299 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-61 Score=471.12 Aligned_cols=263 Identities=36% Similarity=0.617 Sum_probs=223.3
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCC----
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG---- 83 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~---- 83 (416)
..|||+||||+++||.+|||+|||+||++||||+|++ +++|++|++||+|||||++|+.||+||++++..++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 4799999999999999999999999999999999975 389999999999999999999999999876432110
Q ss_pred --CC-CC-----CCCcccccccccCCC-CCCCCC----CCccccccCcceeeeeEeeeeeeecCceeeecceeeeecccc
Q 014903 84 --GG-AG-----AHDPFDIFSSFFGGS-PFGGGS----SRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKC 150 (416)
Q Consensus 84 --gg-~~-----~~d~~diF~~fFGg~-~~~g~~----~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C 150 (416)
++ ++ ..++.|+|++|||++ ++++.+ .....++++.|+.+.+.|||+|+|.|+++++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC--------
Confidence 01 11 123447899999852 111100 0012346789999999999999999998886431
Q ss_pred ccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCc
Q 014903 151 SGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQ 230 (416)
Q Consensus 151 ~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~ 230 (416)
.+.++|.||||++
T Consensus 155 -------------------------------------------------------------------g~~~~V~Ip~G~~ 167 (291)
T PRK14299 155 -------------------------------------------------------------------GERLSVRIPPGVR 167 (291)
T ss_pred -------------------------------------------------------------------CEEEEEecCCCcC
Confidence 1357899999999
Q ss_pred cCCeEeecCCcCCCCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccC
Q 014903 231 NGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKP 310 (416)
Q Consensus 231 ~G~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~ 310 (416)
+|++|+|+|+|++. |||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+||||+ +.|++|++ +++
T Consensus 168 ~G~~ir~~g~G~~~-----GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~-~~v~ip~~--~~~ 239 (291)
T PRK14299 168 EGQVIRLAGKGRQG-----GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGP-VEVTIPPR--TQA 239 (291)
T ss_pred CCcEEEECCCCCCC-----CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCC-EEEEeCCC--cCC
Confidence 99999999999863 99999999999999999999999999999999999999999999997 88999987 899
Q ss_pred CcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 311 DSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 311 g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
|++++|+|+|||.. ++.+|||||+|+|.||+.|+++++++|++++.
T Consensus 240 g~~~rl~g~G~p~~--~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~ 285 (291)
T PRK14299 240 GRKLRLKGKGWPRG--PAGRGDQYAEVRITIPTRPTPEEERLYKQLAE 285 (291)
T ss_pred CCEEEECCCCCCCC--CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999963 35689999999999999999999999999874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=100.00 E-value=1.2e-59 Score=461.96 Aligned_cols=279 Identities=30% Similarity=0.463 Sum_probs=231.6
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccc----ccccc--
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGED----ALKEG-- 81 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~----g~~~g-- 81 (416)
.+|||++|||+++||.+|||+|||+||++||||+|++ +++|++|++||+||+||.+|+.||+||.. ++...
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 3699999999999999999999999999999999864 38999999999999999999999999864 22211
Q ss_pred CCCC--CCCCCcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCc
Q 014903 82 MGGG--AGAHDPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGA 159 (416)
Q Consensus 82 ~~gg--~~~~d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~ 159 (416)
++++ .+..++.++|+.|||+++ + ..+...++++.|+.+.+.|||+|+|+|+.+.+.+++.+
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~--~-~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~-------------- 145 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHA--R-QSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV-------------- 145 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCC--C-CCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc--------------
Confidence 0111 112345588999987421 1 11122345789999999999999999999998876542
Q ss_pred eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecC
Q 014903 160 SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 160 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 239 (416)
|.|.|+. ++ ...+.++|.||+|+++|++|+|+|
T Consensus 146 ------~~g~G~~-----------~~------------------------------~~~~~~~V~Ip~G~~~G~~i~~~g 178 (306)
T PRK10266 146 ------YNAFGMI-----------EQ------------------------------EIPKTLNVKIPAGVGNGQRIRLKG 178 (306)
T ss_pred ------ccCCCeE-----------EE------------------------------eeeEEEEEEECCCCcCCcEEEEec
Confidence 1222310 00 123579999999999999999999
Q ss_pred CcCCCC-CCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 240 EADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 240 ~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
+|++.+ +..+|||+|+|++++|+.|+|+|+||++++.|||.+||+|+++.|+|+||+ +.|++|++ +++|++++|+|
T Consensus 179 ~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~-v~v~ip~g--~~~g~~~ri~g 255 (306)
T PRK10266 179 QGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKES-ILLTIPPG--SQAGQRLRVKG 255 (306)
T ss_pred CCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCcc-EEEEeCCC--cCCCCEEEECC
Confidence 999854 567899999999999999999999999999999999999999999999998 88999998 79999999999
Q ss_pred CCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCCC
Q 014903 319 EGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILPS 359 (416)
Q Consensus 319 ~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp~ 359 (416)
+|||..+ .+|||||+|+|.||+.|+++|+++|++++..
T Consensus 256 ~G~p~~~---~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~ 293 (306)
T PRK10266 256 KGLVSKK---QTGDLYAVLKIVMPPKPDEKTAALWQQLADA 293 (306)
T ss_pred CCCCCCC---CCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9999642 5899999999999999999999999999864
No 33
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-49 Score=381.09 Aligned_cols=305 Identities=41% Similarity=0.704 Sum_probs=246.5
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCccccccccccccccccccC---
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGM--- 82 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~----~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~--- 82 (416)
..+|||++|||+++||+.|||+||||||+||||||||+. ++|++|+.||||||||+||+.||+||++++....
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~ 93 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG 93 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccc
Confidence 457999999999999999999999999999999999973 8999999999999999999999999999997421
Q ss_pred CCCCCCCCcccccccccCCCCC--CCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCce
Q 014903 83 GGGAGAHDPFDIFSSFFGGSPF--GGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS 160 (416)
Q Consensus 83 ~gg~~~~d~~diF~~fFGg~~~--~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~ 160 (416)
.++.++ .++|+.||+..++ +|.. ......++.++...++.+++++|.|......-.+.+.|. |.|+
T Consensus 94 ~~g~~~---~~~f~~~f~dfg~~~~g~~-~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~-~~g~------- 161 (336)
T KOG0713|consen 94 EGGGGG---NDIFSAFFGDFGVTVGGNP-LEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKP-APGT------- 161 (336)
T ss_pred ccCCcc---cchHHHhhcccccccCCCc-ccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceee-cCcc-------
Confidence 111111 4677777764322 2211 122357889999999999999999987776666555542 1111
Q ss_pred eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCC
Q 014903 161 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGE 240 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~ 240 (416)
.. |+-+ ..+..++.+||+++.++ ...|..|.+.+...+...+++.+..|+..+....+..+
T Consensus 162 ~~---~~~~-~~~~~~~~~~g~~~~~q---------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (336)
T KOG0713|consen 162 RK---CNCR-LEMFTQQEGPGRFQMLQ---------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELE 222 (336)
T ss_pred cc---cCCh-hhheeeccCCChhhhhh---------------hhhhccCCccceeecCCceeeeeeecccCCceeeeecc
Confidence 11 1111 23445566666666554 25677777788889999999999999999999999999
Q ss_pred cCCCCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCC
Q 014903 241 ADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEG 320 (416)
Q Consensus 241 G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~G 320 (416)
|.+..-+.+||+++.+..-+|+.|.|+++||++++.|+|.+||.|+..++.|+|+..+.++.. .+..|+..++..++|
T Consensus 223 ~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~--~~~~p~~~~~~~~~~ 300 (336)
T KOG0713|consen 223 GEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRK--KITWPGARTRKKGEG 300 (336)
T ss_pred CCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhh--hccccchhhhhhhcc
Confidence 998778899999999999999999999999999999999999999999999999987666544 446899999999999
Q ss_pred ccCCCCCCCCCCeEEEEEEECCCC-CCH
Q 014903 321 MPLYQRPFMKGKLYIHFTVEFPDS-LTP 347 (416)
Q Consensus 321 mP~~~~~~~~GdL~v~~~V~fP~~-l~~ 347 (416)
||..++....|++|++|.+.||.+ ++.
T Consensus 301 ~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 301 MPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred chhhhccchhcceeEEecccCcccccch
Confidence 998777778999999999999976 555
No 34
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=100.00 E-value=1e-42 Score=361.28 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=115.1
Q ss_pred CCcEEEEeEEEEEEEcCCCccCCeEeecCCcCCCCCCCcccEEEEEEEecCCCccccccccccccccCHHHHhcCcEEEE
Q 014903 211 GDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFAL 290 (416)
Q Consensus 211 G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~eAl~G~~~~i 290 (416)
|...+.+.+.|+|+||+|+++|++|+|+|+|++.+++. |||||+|++++|+.|+|+|+|||+++.|+|.+||+|+++.|
T Consensus 689 G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg~-GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIeI 767 (871)
T TIGR03835 689 TESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNGC-GDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIIDV 767 (871)
T ss_pred CcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCCC-CCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEEe
Confidence 33456678899999999999999999999999876664 99999999999999999999999999999999999999999
Q ss_pred eccCCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEE-CCCC
Q 014903 291 THLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVE-FPDS 344 (416)
Q Consensus 291 ~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~-fP~~ 344 (416)
+||||+ +.|+||+| ++||++++|+|+|||.. ++.||||||+|.|. ++++
T Consensus 768 pTLDGr-VkLkIPpg--TqpGqvLRIkGKGMP~~--~~~RGDLyV~f~V~~~~k~ 817 (871)
T TIGR03835 768 FGPNKL-FNVRIPGG--IKVNDQVIFKDLGLTKT--KYDKGSLIVHLYYSSVMKK 817 (871)
T ss_pred eCCCCC-EEEeeCCC--CCCCcEEEECCCCCCCC--CCCCCCEEEEEEEeecccc
Confidence 999997 88999987 89999999999999953 34689999999985 3443
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-41 Score=323.86 Aligned_cols=241 Identities=33% Similarity=0.680 Sum_probs=207.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccccCCCCCCCC
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAH 89 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~gg~~~~ 89 (416)
|||+||||+++||..|||+||++||++||||.|.+ .++|++|++|||||+|++||+.||++|..+.. +...
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------~~~g 117 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------EFGG 117 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc------cccC
Confidence 99999999999999999999999999999999976 38999999999999999999999999987611 1123
Q ss_pred CcccccccccCCCCCCCCCCCccccccCcceeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCce-eeCCCCcc
Q 014903 90 DPFDIFSSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGAS-MKCSGCQG 168 (416)
Q Consensus 90 d~~diF~~fFGg~~~~g~~~~~~~~~~~~di~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~-~~C~~C~G 168 (416)
+++++|..+|++. ......+.++.+.+.++|+++..|..+.+.+.....|.+|.|.|...+.. ..|..|.|
T Consensus 118 ~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 189 (288)
T KOG0715|consen 118 NPFDVFLEFFGGK--------MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSG 189 (288)
T ss_pred CccchHHHhhccc--------ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCcccccccccchhhhC
Confidence 6788899988740 11223455777789999999999999999999999999999999877765 68999999
Q ss_pred ccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCCCCCCC
Q 014903 169 TGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTV 248 (416)
Q Consensus 169 ~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 248 (416)
.|.+.......+. .. +|..|.|.|.+.. +.|..|.|.+.+...+.+.|.||+|+.++.+|++.+.+..
T Consensus 190 ~~~~~~~~~~~f~----~~-~~~~c~~~~~~~~--~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~----- 257 (288)
T KOG0715|consen 190 RGLVSNPKEDPFI----LY-TCSYCLGRGLVLR--DNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND----- 257 (288)
T ss_pred cccccccccCCcc----ee-ecccccccceecc--chHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-----
Confidence 9965554443332 12 8999999999987 4499999999999999999999999999999999998873
Q ss_pred cccEEEEEEEecCCCccccccccccccccCHHH
Q 014903 249 TGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTE 281 (416)
Q Consensus 249 ~GDliv~i~~~~h~~f~R~G~DL~~~~~I~l~e 281 (416)
||.+.|.|.+++.|+|+|.|+++++.|++.+
T Consensus 258 --~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 --DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred --eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998754
No 36
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-26 Score=222.93 Aligned_cols=251 Identities=46% Similarity=0.777 Sum_probs=185.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCccccccccccccccccccCC-C
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG-G 84 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-----~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~-g 84 (416)
..|||++|+|.++|+.+||++|||+||++||||+|+.+ .+|++|++||++|+|+.+|.+||+||++++.+... .
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 36999999999999999999999999999999998754 57999999999999999999999999977664111 0
Q ss_pred C---C-----CCCCcccccccccCCC-CCCCC--------------------------CC----------CccccccCcc
Q 014903 85 G---A-----GAHDPFDIFSSFFGGS-PFGGG--------------------------SS----------RGRRQRRGED 119 (416)
Q Consensus 85 g---~-----~~~d~~diF~~fFGg~-~~~g~--------------------------~~----------~~~~~~~~~d 119 (416)
+ . ...++.++|..|||.. .+... .. ..........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGKAFQSLYGPKRKQYDSSGSDRSARQSPP 161 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccccccccCCCcccccccccccccccCCCC
Confidence 0 0 1122345677777621 11000 00 0000111222
Q ss_pred eeeeeEeeeeeeecCceeeecceeeeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceE
Q 014903 120 VVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGET 199 (416)
Q Consensus 120 i~~~l~vsLee~~~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~ 199 (416)
+.+.+.+++++++.+..+...+.+... ... +
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~------~-- 192 (306)
T KOG0714|consen 162 VEHPLRVSLEDLYKGESKKMKISRQSF-----------------------------------------TSN------G-- 192 (306)
T ss_pred ccCCcceeHHHhccccceeeecccccc-----------------------------------------cCC------c--
Confidence 344444466666666655554443321 000 0
Q ss_pred EcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeecCCcCCCCCCCcccEEEEEEEecCCCccccccccccc--ccc
Q 014903 200 INDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYE--HTL 277 (416)
Q Consensus 200 ~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~~~--~~I 277 (416)
. ........+.+.+.+++..|+.+.+..+|+..++..|-++++++..++|..|.|.+++|... ..|
T Consensus 193 --------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (306)
T KOG0714|consen 193 --------R----EGSSRSRYLSISIKPGWKEGTKITFPEEGDEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEI 260 (306)
T ss_pred --------c----cccCccceeEEeccCCcccccceeccccccccCCcCcceeEEEEecCCcccccCCCccceeccccee
Confidence 0 01234667889999999999999999999988888899999999999999999999999999 999
Q ss_pred CHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 278 SLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 278 ~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
++.+|++|....+++++++.+.+.+.. .++.++...+|+++|||.
T Consensus 261 s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 261 SLKEALLGVTVFVPTLDGRSYSLSINK-DLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred ehhhhhcCcceeeecccCccccCcccc-cccCCCceeeecCCCCCC
Confidence 999999999999999999876553332 678999999999999985
No 37
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=99.86 E-value=6.8e-22 Score=156.82 Aligned_cols=81 Identities=37% Similarity=0.621 Sum_probs=70.2
Q ss_pred ccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHH
Q 014903 270 DLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQ 349 (416)
Q Consensus 270 DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~ 349 (416)
||+++++|||+||++|+++.|+||||+.+.|++|++ +++|++++|+|+|||...+++.+|||||+|+|.||++||++|
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~--~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPG--TQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST---STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCc--cCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 899999999999999999999999999999999998 899999999999999987776899999999999999999999
Q ss_pred HHH
Q 014903 350 VKA 352 (416)
Q Consensus 350 ~~~ 352 (416)
+++
T Consensus 79 k~l 81 (81)
T PF01556_consen 79 KEL 81 (81)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.83 E-value=3e-21 Score=205.89 Aligned_cols=75 Identities=33% Similarity=0.613 Sum_probs=69.8
Q ss_pred CCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCccccccccccccccccc
Q 014903 6 PKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE 80 (416)
Q Consensus 6 ~~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~ 80 (416)
+.|+.+++||++|||+++||..|||+|||+||++||||+|++ .++|++|++||+|||||.+|+.||+||..|+..
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 557788999999999999999999999999999999999985 389999999999999999999999999988753
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.6e-21 Score=179.59 Aligned_cols=69 Identities=55% Similarity=1.020 Sum_probs=65.0
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h---HHHHHHHHHHHHcCCcccccccccccccccc
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-P---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 79 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-~---~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~ 79 (416)
..+||+||||+++|+.++||||||+||++||||++++ + ++|++||+||+|||||.||.+||.||+.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 4579999999999999999999999999999999987 2 8999999999999999999999999988775
No 40
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.2e-21 Score=184.41 Aligned_cols=89 Identities=44% Similarity=0.748 Sum_probs=78.2
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh----HHHHHHHHHHHHcCCccccccccccccccccccCC
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG 83 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~----~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~ 83 (416)
|+.++|||++|||+.+||..||++|||+.|++|||||||+. ++|+++++||+||+|+.+|+.||++|..+...
T Consensus 1 M~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~--- 77 (296)
T KOG0691|consen 1 MVKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA--- 77 (296)
T ss_pred CcccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc---
Confidence 56689999999999999999999999999999999999963 89999999999999999999999999876542
Q ss_pred CCCCCCCcccccccccCC
Q 014903 84 GGAGAHDPFDIFSSFFGG 101 (416)
Q Consensus 84 gg~~~~d~~diF~~fFGg 101 (416)
.+..+..++|...|++
T Consensus 78 --~~~~d~~~~~r~~f~~ 93 (296)
T KOG0691|consen 78 --QGREDQADGFRKKFGS 93 (296)
T ss_pred --hhhhhHHHHHHHHhhh
Confidence 1245667888888874
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.4e-20 Score=183.52 Aligned_cols=72 Identities=50% Similarity=0.887 Sum_probs=67.4
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCcccccccccccccccc
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK 79 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-------~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~ 79 (416)
...+.+||.+|+|+++||.+|||+|||++++-|||||..|+ ++|+.|.+||||||||.+|++||.||++|++
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 34567999999999999999999999999999999998653 7999999999999999999999999999998
No 42
>PHA03102 Small T antigen; Reviewed
Probab=99.79 E-value=4.2e-20 Score=162.05 Aligned_cols=84 Identities=31% Similarity=0.474 Sum_probs=74.2
Q ss_pred cCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCccccccccccccccccccCCCCCCCC
Q 014903 12 TRYYEILGVSKNA--SAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAH 89 (416)
Q Consensus 12 ~~~Y~iLgv~~~A--s~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~gg~~~~ 89 (416)
..+|++|||+++| |.+|||+|||++|+++|||+++++++|++|++||++|+|+.+|..||.+|....... ..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~------~~ 78 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEE------ED 78 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccccc------cc
Confidence 5789999999999 999999999999999999999999999999999999999999999999998764321 12
Q ss_pred CcccccccccCC
Q 014903 90 DPFDIFSSFFGG 101 (416)
Q Consensus 90 d~~diF~~fFGg 101 (416)
.+.++|+.+||+
T Consensus 79 ~~~~~f~~~fg~ 90 (153)
T PHA03102 79 VPSGYVGATFGD 90 (153)
T ss_pred cHHHHhhhhcCC
Confidence 366788888874
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.2e-18 Score=158.12 Aligned_cols=67 Identities=58% Similarity=0.934 Sum_probs=62.3
Q ss_pred CCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCccccccccccc
Q 014903 8 KSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYG 74 (416)
Q Consensus 8 ~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-----~~~F~~i~~AYevLsd~~kR~~YD~~G 74 (416)
|....+||+||||+++||..||++|||+||++||||+|++ .++|++|++||+||+|+.+|+.||+++
T Consensus 2 ~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 2 MSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred chhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4567899999999999999999999999999999999974 289999999999999999999999973
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.75 E-value=6.5e-19 Score=169.38 Aligned_cols=72 Identities=54% Similarity=0.828 Sum_probs=65.0
Q ss_pred CCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCcccccccccccccccc
Q 014903 7 KKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQYGEDALK 79 (416)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-------~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~ 79 (416)
+.+..+|||+||||.++|+..||-|||||||.|||||...|+ .||-.|..|-||||||+||+.||+ |++-+.
T Consensus 389 kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD 467 (504)
T KOG0624|consen 389 KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLD 467 (504)
T ss_pred HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCC
Confidence 456778999999999999999999999999999999987764 589999999999999999999998 666554
No 45
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=6.5e-19 Score=174.46 Aligned_cols=69 Identities=45% Similarity=0.827 Sum_probs=63.5
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCcccccccccccccccc
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREIYDQYGEDALK 79 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-----~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~ 79 (416)
.+.||+||||.++|++.|||+|||||||+|||||||+. ++|+.|+.||+|||||..|+-||..-+.-|.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 46899999999999999999999999999999999973 8999999999999999999999997765444
No 46
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-18 Score=159.18 Aligned_cols=66 Identities=47% Similarity=0.888 Sum_probs=61.5
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh------HHHHHHHHHHHHcCCcccccccccccc
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP------EKFKELAQAYEVLSDPEKREIYDQYGE 75 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~------~~F~~i~~AYevLsd~~kR~~YD~~G~ 75 (416)
..+|+|+||||.++||+.||++||++||++||||+++.+ ++|+.++.||.||||.++|++||+-|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 345999999999999999999999999999999999742 799999999999999999999999885
No 47
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.72 E-value=2.7e-18 Score=129.84 Aligned_cols=59 Identities=51% Similarity=0.887 Sum_probs=55.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHcCCcccccccc
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-P----EKFKELAQAYEVLSDPEKREIYD 71 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-~----~~F~~i~~AYevLsd~~kR~~YD 71 (416)
|||+||||+++|+.+|||+||++|+++||||+++. . +.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 58999999999999999999999999999999764 3 79999999999999999999998
No 48
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.3e-16 Score=152.39 Aligned_cols=213 Identities=22% Similarity=0.417 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCccccccccccccccccccCCC-CCCCCCcc-cccccccCCCCC
Q 014903 27 EDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GAGAHDPF-DIFSSFFGGSPF 104 (416)
Q Consensus 27 ~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g~~g-g~~~~d~~-diF~~fFGg~~~ 104 (416)
.||+.||--| ..|.| .++|+....+... .-|..+. |+++ ++++.|+| ++|....++...
T Consensus 48 KEI~eAYEVL---sD~eK----------Ra~YD~fG~~~~~----~gg~gg~--g~~~fgg~~~DIF~~~FgGg~~~~~~ 108 (371)
T COG0484 48 KEINEAYEVL---SDPEK----------RAAYDQFGHAGFK----AGGFGGF--GFGGFGGDFGDIFEDFFGGGGGGRRR 108 (371)
T ss_pred HHHHHHHHHh---CCHHH----------HHHhhccCccccc----cCCcCCC--CcCCCCCCHHHHHHHhhcCCCcccCC
Confidence 4899999988 33333 5689987766544 2222222 2221 22667766 677544332211
Q ss_pred CCCCCCccccccCccee-----------eeeEeeeeeee---cCceeeecceeeeeccccccCCcccC--------ceee
Q 014903 105 GGGSSRGRRQRRGEDVV-----------HPLKVSLEDLY---LGTSKKLSLSRNVICSKCSGKGSKSG--------ASMK 162 (416)
Q Consensus 105 ~g~~~~~~~~~~~~di~-----------~~l~vsLee~~---~G~~~~~~~~r~~~C~~C~G~G~~~~--------~~~~ 162 (416)
..+ ..++..-..++. .++.++-...+ .|...+ .-+...+|++|+|+|.... ...+
T Consensus 109 ~~~--~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak-~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~ 185 (371)
T COG0484 109 PNR--PRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAK-PGTDPKTCPTCNGSGQVRTVQRTGFFSFQQT 185 (371)
T ss_pred CCC--cccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCC-CCCCCCcCCCCCCcCeEEEEEeeeEEEEEEE
Confidence 111 122222222222 23444444433 344333 4446789999999996432 2368
Q ss_pred CCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCC-----CCCCCCCC-------------------------
Q 014903 163 CSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKD-----RCPQCKGD------------------------- 212 (416)
Q Consensus 163 C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~-----~C~~C~G~------------------------- 212 (416)
|+.|+|+|. .+..+|+.|+|.|.+...+. +--...|.
T Consensus 186 C~~C~G~G~-------------~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~ 252 (371)
T COG0484 186 CPTCNGTGK-------------IIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVH 252 (371)
T ss_pred CCCCcccee-------------ECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEE
Confidence 999999993 45789999999998543211 11111111
Q ss_pred ----------------------------cEEEEe---EEEEEEEcCCCccCCeEeecCCcCC-CCCCCcccEEEEEEEec
Q 014903 213 ----------------------------KVVQEK---KVLEVIVEKGMQNGQKITFPGEADE-APDTVTGDIVFVLQQKE 260 (416)
Q Consensus 213 ----------------------------g~v~~~---~~l~V~Ip~G~~~G~~i~~~g~G~~-~~~~~~GDliv~i~~~~ 260 (416)
+.+... -.++|.||+|+++|++|+|+|+|.+ ..+...|||||.|+|.-
T Consensus 253 v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~ 332 (371)
T COG0484 253 VKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVET 332 (371)
T ss_pred eecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEc
Confidence 111100 1589999999999999999999998 45566799999999999
Q ss_pred CCCccccccccccc
Q 014903 261 HPKFKRKGEDLFYE 274 (416)
Q Consensus 261 h~~f~R~G~DL~~~ 274 (416)
+..+......|+-+
T Consensus 333 P~~ls~~q~~lL~~ 346 (371)
T COG0484 333 PKNLSDEQKELLEE 346 (371)
T ss_pred CCCCCHHHHHHHHH
Confidence 88877666555543
No 49
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.65 E-value=1.5e-16 Score=118.55 Aligned_cols=55 Identities=65% Similarity=1.040 Sum_probs=51.2
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCccc
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEK 66 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-----~~~F~~i~~AYevLsd~~k 66 (416)
++||++|||+++|+.++||+|||+|+++||||++++ .+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999983 4899999999999999853
No 50
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.9e-17 Score=157.63 Aligned_cols=89 Identities=51% Similarity=0.889 Sum_probs=74.1
Q ss_pred CCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCcccccccccccccccccc
Q 014903 7 KKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEG 81 (416)
Q Consensus 7 ~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~~g 81 (416)
+|+..+|||.||||+++||..|||+|||++|+.||||+|.. +.+|+++-+||.||+||.+|..||. |.+ +...
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds-g~d-le~~ 445 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS-GQD-LEEV 445 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc-ccc-hhhh
Confidence 46778899999999999999999999999999999999864 3699999999999999999999997 322 2221
Q ss_pred CCCCCCCCCcccccccc
Q 014903 82 MGGGAGAHDPFDIFSSF 98 (416)
Q Consensus 82 ~~gg~~~~d~~diF~~f 98 (416)
+ +++++++|+++|..|
T Consensus 446 ~-~~~a~~dp~~~~~a~ 461 (486)
T KOG0550|consen 446 G-SGGAGFDPFNIFRAF 461 (486)
T ss_pred c-CCCcCcChhhhhhhc
Confidence 1 223568888998887
No 51
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.6e-16 Score=141.76 Aligned_cols=68 Identities=41% Similarity=0.720 Sum_probs=62.9
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCcccccccccccccc
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDA 77 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd~~kR~~YD~~G~~g 77 (416)
..-|+|+||||+++||++|||||||+|.+||||||+++ ++.|..|+.||+.|+|+..|+.|..||...
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 45699999999999999999999999999999999765 478999999999999999999999999753
No 52
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=7e-16 Score=112.73 Aligned_cols=51 Identities=65% Similarity=1.026 Sum_probs=48.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCC
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSD 63 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~----~~~F~~i~~AYevLsd 63 (416)
|||++|||++++|.++||+|||+|+++||||++++ .+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999985 4899999999999987
No 53
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=5.9e-15 Score=149.22 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=50.1
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++++++|+|.+.+ +...|||||+|+|..++.|++++.+|+.++
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999999854 346799999999999999999999988764
No 54
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.53 E-value=2.9e-14 Score=108.45 Aligned_cols=65 Identities=42% Similarity=0.947 Sum_probs=52.8
Q ss_pred ccccccCCcccC-ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCc
Q 014903 147 CSKCSGKGSKSG-ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDK 213 (416)
Q Consensus 147 C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g 213 (416)
|+.|+|+|++.+ ...+|+.|+|+|+++..++ .|+++++++++|+.|+|+|++| ++++|+.|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~-~~~~~~~~~~~C~~C~G~G~~i-~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ-TPGGVFQMQQTCPKCGGTGKII-EKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE-SSSTTEEEEEE-TTTSSSSEE--TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe-CCCeEEEEEEECCCCcceeeEE-CCCCCCCCCCcC
Confidence 899999999654 4579999999999999888 7778899999999999999999 789999999975
No 55
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.52 E-value=1.1e-14 Score=121.51 Aligned_cols=57 Identities=32% Similarity=0.503 Sum_probs=52.2
Q ss_pred CCCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 014903 5 APKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLS 62 (416)
Q Consensus 5 ~~~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLs 62 (416)
.+.|. ..++|++|||+++||.+|||+|||+|+++||||++++++.|++|++|||+|.
T Consensus 59 ~~~Ms-~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMS-KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred cCCCC-HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 44554 4699999999999999999999999999999999988999999999999995
No 56
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=3.1e-13 Score=136.42 Aligned_cols=118 Identities=23% Similarity=0.534 Sum_probs=82.2
Q ss_pred eeeeccccccCCcccC------ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCC-------------
Q 014903 143 RNVICSKCSGKGSKSG------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK------------- 203 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~------------- 203 (416)
....|+.|+|+|.... ...+|+.|.|+|.. +..+|+.|.|.|.+...+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G 221 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI-------------IKTPCQACKGKTYILKDEEIDAIIPEGIDDQ 221 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE-------------ccccCccCCCcceEEEEEEEEEecCCCCCCC
Confidence 4568999999996431 23589999999943 457899999998653210
Q ss_pred ---------CCCCCC-CCCcEEEEe--------------------------------------EEEEEEEcCCCccCCeE
Q 014903 204 ---------DRCPQC-KGDKVVQEK--------------------------------------KVLEVIVEKGMQNGQKI 235 (416)
Q Consensus 204 ---------~~C~~C-~G~g~v~~~--------------------------------------~~l~V~Ip~G~~~G~~i 235 (416)
+.=... .|.=++... ..++|.||+|+++|+++
T Consensus 222 ~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~ 301 (369)
T PRK14288 222 NRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTF 301 (369)
T ss_pred CEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEE
Confidence 000000 111111111 15899999999999999
Q ss_pred eecCCcCCCCCC-CcccEEEEEEEecCCCcccccccccc
Q 014903 236 TFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGEDLFY 273 (416)
Q Consensus 236 ~~~g~G~~~~~~-~~GDliv~i~~~~h~~f~R~G~DL~~ 273 (416)
+|+|+|.+.++. ..|||||+|++..++.|+.+...|+-
T Consensus 302 ~i~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~ 340 (369)
T PRK14288 302 AFRNEGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLE 340 (369)
T ss_pred EEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 999999986654 46999999999999887776654443
No 57
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=4.4e-14 Score=126.72 Aligned_cols=61 Identities=33% Similarity=0.492 Sum_probs=55.3
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCccccccccc
Q 014903 12 TRYYEILGVSKN--ASAEDLKKAYKKAAIKNHPDKGGDP-------EKFKELAQAYEVLSDPEKREIYDQ 72 (416)
Q Consensus 12 ~~~Y~iLgv~~~--As~~eIk~Ayrkla~k~HPDk~~~~-------~~F~~i~~AYevLsd~~kR~~YD~ 72 (416)
.|||++|||++. ++..+|++|||+|+++||||++.+. +.|..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999996 7899999999999999999998653 357899999999999999999975
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-14 Score=133.40 Aligned_cols=63 Identities=40% Similarity=0.759 Sum_probs=58.9
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCcccccccccc
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQY 73 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~---~~F~~i~~AYevLsd~~kR~~YD~~ 73 (416)
..|.|++|||+++|+.+||+||||+||++||||+++++ +.|+.|.+|||+|.|.+.|..||-+
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 35899999999999999999999999999999999874 6799999999999999999999964
No 59
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=6.1e-14 Score=126.51 Aligned_cols=61 Identities=25% Similarity=0.445 Sum_probs=54.9
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCccccccccc
Q 014903 12 TRYYEILGVSKN--ASAEDLKKAYKKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 72 (416)
Q Consensus 12 ~~~Y~iLgv~~~--As~~eIk~Ayrkla~k~HPDk~~~---------~~~F~~i~~AYevLsd~~kR~~YD~ 72 (416)
.|||++|||++. ++..+|+++||+|+++||||+..+ .++|+.||+||++|+||.+|+.|+-
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 678999999999999999999653 1589999999999999999999984
No 60
>PHA02624 large T antigen; Provisional
Probab=99.43 E-value=8.6e-14 Score=144.94 Aligned_cols=60 Identities=33% Similarity=0.533 Sum_probs=57.9
Q ss_pred CcCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCccccccc
Q 014903 11 NTRYYEILGVSKNA--SAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIY 70 (416)
Q Consensus 11 ~~~~Y~iLgv~~~A--s~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~~kR~~Y 70 (416)
..+||++|||+++| |.+|||+|||+||++||||+++++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35899999999999 9999999999999999999999999999999999999999999998
No 61
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=1.9e-12 Score=131.52 Aligned_cols=53 Identities=19% Similarity=0.297 Sum_probs=42.1
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+..+ ...|||||+|+|.-+..++.+...|+
T Consensus 306 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l 359 (386)
T PRK14277 306 KVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELL 359 (386)
T ss_pred CEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 478999999999999999999997543 35799999999987765554444433
No 62
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=3.4e-13 Score=122.05 Aligned_cols=62 Identities=24% Similarity=0.417 Sum_probs=55.2
Q ss_pred CcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCccccccccc
Q 014903 11 NTRYYEILGVSKN--ASAEDLKKAYKKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 72 (416)
Q Consensus 11 ~~~~Y~iLgv~~~--As~~eIk~Ayrkla~k~HPDk~~~~---------~~F~~i~~AYevLsd~~kR~~YD~ 72 (416)
..|||++|||++. ++..+|+++||+|+++||||+++.. +.+..||+||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3699999999995 6789999999999999999997631 356899999999999999999984
No 63
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=4e-13 Score=121.10 Aligned_cols=63 Identities=24% Similarity=0.432 Sum_probs=56.7
Q ss_pred CCcCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCccccccccc
Q 014903 10 NNTRYYEILGVSKN--ASAEDLKKAYKKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 72 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~--As~~eIk~Ayrkla~k~HPDk~~~---------~~~F~~i~~AYevLsd~~kR~~YD~ 72 (416)
...+||++|||++. .+..+|++|||+|+++||||++.+ .++|..||+||++|+||.+|+.|+-
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 46799999999997 567999999999999999999753 1579999999999999999999994
No 64
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=1.9e-12 Score=130.84 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=50.3
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++|+|+|+|++.+ +..+|||||+|+++.|+.|++++.+|+.++
T Consensus 304 ~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 304 TTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred EEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999999853 446799999999999999999999988654
No 65
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.33 E-value=4.1e-12 Score=128.28 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=50.5
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCccccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEHT 276 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~~~~~ 276 (416)
.++|.||+|+++|++|+|+|+|++.++ ..+|||||+|++..|+.|+++..+|+..+.
T Consensus 291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~ 348 (366)
T PRK14294 291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTEFA 348 (366)
T ss_pred cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999998654 467999999999999999999988887643
No 66
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.32 E-value=3.7e-12 Score=128.54 Aligned_cols=56 Identities=16% Similarity=0.311 Sum_probs=50.9
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++|+|+|+|.+.++ ..+|||||+|++..|+.|++++.+|+.++
T Consensus 297 ~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~ 353 (365)
T PRK14290 297 KYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353 (365)
T ss_pred eEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999999998654 36899999999999999999999998774
No 67
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1e-12 Score=130.89 Aligned_cols=64 Identities=44% Similarity=0.610 Sum_probs=60.0
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCcccccccccc
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYEVLSDPEKREIYDQY 73 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYevLsd~~kR~~YD~~ 73 (416)
+..|.|.+|||.+++|+++|||+|||+|.--|||||-. +|.|+.+..|||||+|++||..||.-
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 46799999999999999999999999999999999965 48999999999999999999999974
No 68
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.31 E-value=9.4e-12 Score=125.52 Aligned_cols=55 Identities=16% Similarity=0.334 Sum_probs=48.8
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCCC-CcccEEEEEEEecCCCccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPDT-VTGDIVFVLQQKEHPKFKRKGEDLFYE 274 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~-~~GDliv~i~~~~h~~f~R~G~DL~~~ 274 (416)
.++|.||+|+++|++|+|+|+|++.++. ..|||||+|+++.|+.|++++..|+-.
T Consensus 294 ~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~ 349 (365)
T PRK14285 294 KIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLEN 349 (365)
T ss_pred EEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999999999986544 469999999999999999998776654
No 69
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.30 E-value=7.2e-12 Score=126.83 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=49.6
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++|+|+|+|.+..+ ...|||||+|++..++.|++++.+|+.++
T Consensus 292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l 348 (377)
T PRK14298 292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELLREF 348 (377)
T ss_pred CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998543 45799999999999999999998888765
No 70
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.28 E-value=2.8e-12 Score=123.77 Aligned_cols=54 Identities=35% Similarity=0.599 Sum_probs=48.7
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHcCC
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD-----------PEKFKELAQAYEVLSD 63 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~-----------~~~F~~i~~AYevLsd 63 (416)
...++|++|||+++||.+|||+|||+|+++||||++.+ .++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44699999999999999999999999999999999632 2799999999999975
No 71
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=3e-11 Score=122.25 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=47.6
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++|+|+|+|.+.++ ..+|||||+|++..|+.++.+..+|+..+
T Consensus 291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~l 347 (373)
T PRK14301 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREF 347 (373)
T ss_pred cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999998654 45799999999999988887776666543
No 72
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.23 E-value=3.3e-11 Score=122.66 Aligned_cols=117 Identities=26% Similarity=0.528 Sum_probs=81.3
Q ss_pred eeeeccccccCCcccC------ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCC-------------
Q 014903 143 RNVICSKCSGKGSKSG------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK------------- 203 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~------------- 203 (416)
....|+.|+|+|.... ...+|+.|+|+|.+ +..+|..|.|.|.+...+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 255 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI-------------IEDPCEECKGTGVTTRTRTINVRIPPGVEDG 255 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE-------------eCCcCCCCCCCeEEEEeeeeEEEeCCCCCCC
Confidence 4578999999997532 23689999999943 457899999998654211
Q ss_pred ---------CCCCCC--CCCcEEE-------------------------------------EeEEEEEEEcCCCccCCeE
Q 014903 204 ---------DRCPQC--KGDKVVQ-------------------------------------EKKVLEVIVEKGMQNGQKI 235 (416)
Q Consensus 204 ---------~~C~~C--~G~g~v~-------------------------------------~~~~l~V~Ip~G~~~G~~i 235 (416)
+.-... .|.=++. -...++|.||+|+++|++|
T Consensus 256 ~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~i 335 (392)
T PRK14279 256 QRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRIL 335 (392)
T ss_pred cEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEE
Confidence 000000 1111111 0115899999999999999
Q ss_pred eecCCcCCCCCCCcccEEEEEEEecCCCccccccccc
Q 014903 236 TFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 236 ~~~g~G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
+|+|+|++..+..+|||||+|++.-+..+..+...|+
T Consensus 336 ri~g~G~p~~~~~~GDL~I~~~v~~P~~Ls~~q~~~l 372 (392)
T PRK14279 336 RVRGRGVPKRSGGAGDLLVTVKVAVPPNLDGAAAEAL 372 (392)
T ss_pred EECCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 9999999876667899999999998876555444433
No 73
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.22 E-value=4.1e-12 Score=125.88 Aligned_cols=66 Identities=41% Similarity=0.725 Sum_probs=61.2
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCccccccccccccc
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQYGED 76 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---------~~~F~~i~~AYevLsd~~kR~~YD~~G~~ 76 (416)
--|+|+||||+.++|..+||++||+|..||||||-+. ++++++|++||+.|+|...|+.|=.||.-
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 3589999999999999999999999999999999764 38999999999999999999999999863
No 74
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=6.3e-11 Score=119.85 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=45.0
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|++.+ +..+|||||+|++..+..|+-+...|+
T Consensus 293 ~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~v~~P~~ls~~qk~~l 346 (372)
T PRK14300 293 KVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELL 346 (372)
T ss_pred EEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 79999999999999999999999865 356899999999999987666554444
No 75
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.20 E-value=6.1e-11 Score=120.73 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=48.5
Q ss_pred EEEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCcccccccccccc
Q 014903 219 KVLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 219 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
..++|.||+|+++|++|+|+|+|.+.+ +..+|||||+|++..++.++.+...|+-.+
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 363 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQF 363 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999999999854 346799999999999998888777666543
No 76
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.19 E-value=7.1e-11 Score=118.89 Aligned_cols=54 Identities=13% Similarity=0.295 Sum_probs=47.0
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCcccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLFY 273 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~~ 273 (416)
.++|.||+|+++|++|+|+|+|.+.++ ..+|||||+|++..++.|+++...|+-
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 589999999999999999999998553 368999999999999988888766653
No 77
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=1.1e-10 Score=118.19 Aligned_cols=56 Identities=14% Similarity=0.236 Sum_probs=49.3
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCCC--CcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPDT--VTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~--~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++|+|+|+|.+.++. ..|||||+|++..++.+++++.+|+-++
T Consensus 294 ~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l 351 (374)
T PRK14293 294 PVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEERELLEKL 351 (374)
T ss_pred CEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999985543 4799999999999999999998887654
No 78
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=9.8e-11 Score=118.40 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=47.9
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCcccccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFYEH 275 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~~~ 275 (416)
.++|.||+|+++|++|+|+|+|.+.. +...|||||+|++..++.++++...|+-++
T Consensus 289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l 345 (371)
T PRK14287 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELMREF 345 (371)
T ss_pred CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999999999999854 345799999999999999888876666543
No 79
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=1.4e-10 Score=118.01 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=44.3
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCCCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+..+..+|||||+|++.-+..+.-....|+
T Consensus 314 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~GDL~i~~~v~~P~~Ls~~qk~~l 366 (389)
T PRK14295 314 PVTVKLPPGTPNGRVLRVRGKGAVRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366 (389)
T ss_pred EEEEEECCccCCCcEEEECCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 79999999999999999999999865667899999999998776555444444
No 80
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=1.9e-10 Score=116.64 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=43.0
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+.. +...|||||+|+|.-+..++.+...|+
T Consensus 291 ~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 344 (378)
T PRK14278 291 PSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELL 344 (378)
T ss_pred eEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 68999999999999999999999854 346799999999987765554444433
No 81
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=2.1e-10 Score=115.96 Aligned_cols=117 Identities=23% Similarity=0.495 Sum_probs=81.5
Q ss_pred eeeeccccccCCcccC------ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCC-------------
Q 014903 143 RNVICSKCSGKGSKSG------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK------------- 203 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~------------- 203 (416)
....|+.|+|+|.... ...+|+.|+|+|.+ +..+|+.|+|.|.+...+
T Consensus 166 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G 232 (372)
T PRK14286 166 SPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTV-------------ISNPCKTCGGQGLQEKRRTINIKIPPGVETG 232 (372)
T ss_pred CCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeE-------------ecccCCCCCCCcEEecceEEEEEECCCCCCC
Confidence 3467999999996432 23589999999943 356899999998764311
Q ss_pred ---------CCCCC--CCCCcEEEE--------------------------------------eEEEEEEEcCCCccCCe
Q 014903 204 ---------DRCPQ--CKGDKVVQE--------------------------------------KKVLEVIVEKGMQNGQK 234 (416)
Q Consensus 204 ---------~~C~~--C~G~g~v~~--------------------------------------~~~l~V~Ip~G~~~G~~ 234 (416)
+.+.. -.|.-++.. .+.++|.||+|+++|++
T Consensus 233 ~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~ 312 (372)
T PRK14286 233 SRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQV 312 (372)
T ss_pred CEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcE
Confidence 11211 112111111 11589999999999999
Q ss_pred EeecCCcCCCCC-CCcccEEEEEEEecCCCccccccccc
Q 014903 235 ITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 235 i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
++|+|+|.+..+ ...|||||+|++.-+..++.+...|+
T Consensus 313 ~ri~G~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 351 (372)
T PRK14286 313 FRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351 (372)
T ss_pred EEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 999999998543 45799999999998887666655544
No 82
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=2.4e-10 Score=115.77 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=43.2
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+.. +...|||||+|++..+..++.+...|+
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l 347 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKELL 347 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999854 346799999999998776555544443
No 83
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=2.1e-10 Score=116.38 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=43.6
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+.++ ..+|||||+|++.-+..+..+...|+
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l 350 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKEAL 350 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH
Confidence 579999999999999999999998653 46799999999998876665554444
No 84
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=2.8e-10 Score=116.07 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=42.6
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+.+ +...|||||+|+|.-+..++.+...|+
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l 366 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELL 366 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHH
Confidence 57999999999999999999999854 345799999999987776554443333
No 85
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=3e-10 Score=115.04 Aligned_cols=129 Identities=21% Similarity=0.437 Sum_probs=86.4
Q ss_pred ecCceeeecceeeeeccccccCCcccC----------ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEc
Q 014903 132 YLGTSKKLSLSRNVICSKCSGKGSKSG----------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 201 (416)
Q Consensus 132 ~~G~~~~~~~~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 201 (416)
..|............|+.|+|+|.... ...+|..|+|+|.. +..+|+.|.|+|.+..
T Consensus 145 C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------~~~~C~~C~G~g~v~~ 211 (371)
T PRK14292 145 CHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI-------------ITDPCTVCRGRGRTLK 211 (371)
T ss_pred CcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCccccee-------------cCCCCCCCCCceEEee
Confidence 345544433334678999999996542 12579999999943 3578999999886532
Q ss_pred CC----------------------CCCCCCCCCcEEEEe-------------------------------------EEEE
Q 014903 202 DK----------------------DRCPQCKGDKVVQEK-------------------------------------KVLE 222 (416)
Q Consensus 202 ~~----------------------~~C~~C~G~g~v~~~-------------------------------------~~l~ 222 (416)
.+ +.-..-.|.-++... ...+
T Consensus 212 ~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~ 291 (371)
T PRK14292 212 AETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQV 291 (371)
T ss_pred cceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEE
Confidence 11 000000011111111 1357
Q ss_pred EEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCcccccccccc
Q 014903 223 VIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLFY 273 (416)
Q Consensus 223 V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~~ 273 (416)
|.||+|+++|++|+|+|+|++.+ +..+|||||+|++..++.|+.+...|+-
T Consensus 292 v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~ 343 (371)
T PRK14292 292 IEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREALE 343 (371)
T ss_pred EecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999854 4567999999999999988877655553
No 86
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=5.7e-10 Score=113.29 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=42.8
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+.. +...|||||+|+|.-+..++.+...|+
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l 352 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEAL 352 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEEEEEEcCCCCCHHHHHHH
Confidence 58999999999999999999999854 346799999999988776555444333
No 87
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.07 E-value=5.8e-10 Score=112.81 Aligned_cols=53 Identities=11% Similarity=0.210 Sum_probs=42.5
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC--CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP--DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~--~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++++|+|+|.+.. ....|||||+|+|.-+..++.+...|+
T Consensus 301 ~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l 355 (372)
T PRK14296 301 DIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELI 355 (372)
T ss_pred CEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHH
Confidence 58999999999999999999999732 335799999999998776555544443
No 88
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=6.1e-10 Score=113.32 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=40.8
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKG 268 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G 268 (416)
.++|.||+|+++|++|+|+|+|.+.+ +..+|||||+|+++-....+.+.
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q 354 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPETLSKEE 354 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEEEEEEeCCCCCHHH
Confidence 68999999999999999999999854 34679999999998776544443
No 89
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=1.7e-09 Score=109.87 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=38.1
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCCC-CCcccEEEEEEEecCC
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAPD-TVTGDIVFVLQQKEHP 262 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~-~~~GDliv~i~~~~h~ 262 (416)
.++|.||+|+++|++|+|+|+|++.++ ..+|||||+|++.-+.
T Consensus 303 ~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~ 346 (382)
T PRK14291 303 KEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPK 346 (382)
T ss_pred EEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCC
Confidence 689999999999999999999998553 4679999999998765
No 90
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.99 E-value=1.1e-09 Score=112.13 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=39.6
Q ss_pred EEEEEEcCC--CccCCeEeecCCcCCCCC--CCcccEEEEEEEecC--CCcccc
Q 014903 220 VLEVIVEKG--MQNGQKITFPGEADEAPD--TVTGDIVFVLQQKEH--PKFKRK 267 (416)
Q Consensus 220 ~l~V~Ip~G--~~~G~~i~~~g~G~~~~~--~~~GDliv~i~~~~h--~~f~R~ 267 (416)
.|+|.||+| +++|++++|+|+|.+..+ ...|||||+|+|.-+ ..++.+
T Consensus 302 ~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~ 355 (421)
T PTZ00037 302 KLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNE 355 (421)
T ss_pred eEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHH
Confidence 689999999 999999999999998533 357999999999876 544433
No 91
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=2.4e-09 Score=108.66 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred EEEEEEcCCCccCCeEeecCCcCCCC-CCCcccEEEEEEEecCCCccccccccc
Q 014903 220 VLEVIVEKGMQNGQKITFPGEADEAP-DTVTGDIVFVLQQKEHPKFKRKGEDLF 272 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~GDliv~i~~~~h~~f~R~G~DL~ 272 (416)
.++|.||+|+++|++|+|+|+|.+.. +...|||||+|++.-.+..+.+...|+
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll 350 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVVPKKLSPKQKELL 350 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHH
Confidence 58899999999999999999999854 346799999999987765555544444
No 92
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.91 E-value=1.3e-09 Score=97.09 Aligned_cols=49 Identities=31% Similarity=0.412 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCccccccccc
Q 014903 24 ASAEDLKKAYKKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYDQ 72 (416)
Q Consensus 24 As~~eIk~Ayrkla~k~HPDk~~~---------~~~F~~i~~AYevLsd~~kR~~YD~ 72 (416)
-+..+|+++||+|+++||||+.+. .+.|..||+||++|+||.+|+.|+-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 367899999999999999998542 1689999999999999999999985
No 93
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.85 E-value=6.1e-09 Score=86.56 Aligned_cols=61 Identities=28% Similarity=0.654 Sum_probs=50.2
Q ss_pred eeeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEE
Q 014903 143 RNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQE 217 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~ 217 (416)
..+.|..|+|+|.. +|+.|+|+|++...+ ++ .++++.+|+.|.|+|+. .|+.|+|++++..
T Consensus 40 ~~v~C~~C~GsG~~-----~C~~C~G~G~v~~~~--~g--~~q~~~~C~~C~G~Gk~-----~C~~C~G~G~~~~ 100 (111)
T PLN03165 40 NTQPCFPCSGTGAQ-----VCRFCVGSGNVTVEL--GG--GEKEVSKCINCDGAGSL-----TCTTCQGSGIQPR 100 (111)
T ss_pred cCCCCCCCCCCCCc-----CCCCCcCcCeEEEEe--CC--cEEEEEECCCCCCccee-----eCCCCCCCEEEee
Confidence 35789999999983 899999999877543 33 36788999999999974 4999999998764
No 94
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.3e-09 Score=102.07 Aligned_cols=70 Identities=39% Similarity=0.452 Sum_probs=61.8
Q ss_pred CCCCCCCcCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHcCCccccccccccc
Q 014903 5 APKKSNNTRYYEILGVSK---NASAEDLKKAYKKAAIKNHPDKGG------DPEKFKELAQAYEVLSDPEKREIYDQYG 74 (416)
Q Consensus 5 ~~~~~~~~~~Y~iLgv~~---~As~~eIk~Ayrkla~k~HPDk~~------~~~~F~~i~~AYevLsd~~kR~~YD~~G 74 (416)
.++.|...|+|.+|||++ -|.+..|.+|.++...+||||+.. ..+-|+.|+.|||||+|+.+|.+||.--
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 356677889999999997 788999999999999999999962 1489999999999999999999999743
No 95
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.82 E-value=4.5e-09 Score=94.87 Aligned_cols=60 Identities=20% Similarity=0.271 Sum_probs=53.4
Q ss_pred cCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCcccccccc
Q 014903 12 TRYYEILGVSKN--ASAEDLKKAYKKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYD 71 (416)
Q Consensus 12 ~~~Y~iLgv~~~--As~~eIk~Ayrkla~k~HPDk~~~~---------~~F~~i~~AYevLsd~~kR~~YD 71 (416)
.|||++|||++. .+...+++.||.|.+++|||+.... +.-..||+||.+|+||-+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 589999999986 8899999999999999999996431 46788999999999999999884
No 96
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.80 E-value=1.1e-08 Score=100.22 Aligned_cols=71 Identities=28% Similarity=0.365 Sum_probs=64.5
Q ss_pred ccccccccccccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCC
Q 014903 264 FKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPD 343 (416)
Q Consensus 264 f~R~G~DL~~~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~ 343 (416)
+.|+|.||++++.|||.||++|+++.| +++|+.+.|.||+| +++|++++++|+|++. |||||+|+|.-++
T Consensus 125 ~~~~g~dl~~~l~isL~ea~~G~~~~i-~l~g~~~~V~Ip~G--~~~G~~ir~~g~G~~~-------GDL~v~i~v~~h~ 194 (291)
T PRK14299 125 RARKGRDLEAELPLTLEEAYRGGEKVV-EVAGERLSVRIPPG--VREGQVIRLAGKGRQG-------GDLYLVVRLLPHP 194 (291)
T ss_pred CCCCCCCEEEEEEecHHHHhCCCeEEE-eeCCEEEEEecCCC--cCCCcEEEECCCCCCC-------CCEEEEEEEcCCC
Confidence 457899999999999999999999998 78998899999999 8999999999999962 9999999998555
Q ss_pred C
Q 014903 344 S 344 (416)
Q Consensus 344 ~ 344 (416)
.
T Consensus 195 ~ 195 (291)
T PRK14299 195 V 195 (291)
T ss_pred C
Confidence 4
No 97
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-08 Score=90.99 Aligned_cols=60 Identities=33% Similarity=0.562 Sum_probs=54.2
Q ss_pred CCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCcccccc
Q 014903 10 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-----EKFKELAQAYEVLSDPEKREI 69 (416)
Q Consensus 10 ~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-----~~F~~i~~AYevLsd~~kR~~ 69 (416)
-+.++|++|.|.|+.+.++||+.||+|++-.|||||+|. ..|.-+..||..|-|+.-|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 467899999999999999999999999999999999974 689999999999999875443
No 98
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.62 E-value=8.3e-08 Score=94.77 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=62.9
Q ss_pred ccccccccccccCHHHHhcCcEEEE----eccC--C-------cEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCC
Q 014903 266 RKGEDLFYEHTLSLTEALCGFQFAL----THLD--G-------RQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGK 332 (416)
Q Consensus 266 R~G~DL~~~~~I~l~eAl~G~~~~i----~tld--G-------~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~Gd 332 (416)
|+|.||++++.|||.||+.|+...| ++++ | +.+.|.||+| +++|++++++|+|||.. +...+||
T Consensus 115 ~kg~di~~~v~isLee~~~G~~k~i~~~~~~~~g~G~~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~-~~~~~GD 191 (306)
T PRK10266 115 ARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAG--VGNGQRIRLKGQGTPGE-NGGPNGD 191 (306)
T ss_pred CCCCceEEEEEEEHHHhcCCceEEEEEecccccCCCeEEEeeeEEEEEEECCC--CcCCcEEEEecCCcCCC-CCCCCcc
Confidence 5689999999999999999995444 5555 3 4688999999 89999999999999964 3346899
Q ss_pred eEEEEEEECCCC
Q 014903 333 LYIHFTVEFPDS 344 (416)
Q Consensus 333 L~v~~~V~fP~~ 344 (416)
|||+|+|. |..
T Consensus 192 l~v~i~v~-ph~ 202 (306)
T PRK10266 192 LWLVIHIA-PHP 202 (306)
T ss_pred EEEEEEEc-CCC
Confidence 99999999 765
No 99
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.7e-08 Score=105.34 Aligned_cols=60 Identities=33% Similarity=0.513 Sum_probs=49.9
Q ss_pred CCCCCCCCcCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHcCC
Q 014903 4 RAPKKSNNTRYYEILGVSKN----ASAEDLKKAYKKAAIKNHPDKGGDP-EKFKELAQAYEVLSD 63 (416)
Q Consensus 4 ~~~~~~~~~~~Y~iLgv~~~----As~~eIk~Ayrkla~k~HPDk~~~~-~~F~~i~~AYevLsd 63 (416)
+-|.|+...+-|+||.|+-+ -..+.||++|+|||.||||||||.- ++|..+++|||.|+.
T Consensus 1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 34556666688999999853 2346799999999999999999974 999999999999983
No 100
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=98.33 E-value=7.5e-07 Score=80.90 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=46.4
Q ss_pred eeeCCCCCCCceEEcCCCCCCCCCCCcEEEEeEEEEEEEcCCCccCCeEeec
Q 014903 187 QHPCNECKGTGETINDKDRCPQCKGDKVVQEKKVLEVIVEKGMQNGQKITFP 238 (416)
Q Consensus 187 ~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~ 238 (416)
+.+|+.|+|+|+++...++|+.|+|.|.+..++.+.+.+ .|+.+|++|++.
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 567999999999988778999999999999999999999 999999999875
No 101
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=9.6e-07 Score=81.18 Aligned_cols=52 Identities=31% Similarity=0.693 Sum_probs=47.5
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-HcCC
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD---PEKFKELAQAYE-VLSD 63 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~---~~~F~~i~~AYe-vLsd 63 (416)
..||.+|||...|+.+|++.||.+||+++|||...+ .+.|..|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999998754 489999999998 8864
No 102
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=98.24 E-value=9e-07 Score=70.00 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=35.9
Q ss_pred EEEEEEEcCCCccCCeEeecCCcCCCC-C-CCcccEEEEEEEecCCCccc
Q 014903 219 KVLEVIVEKGMQNGQKITFPGEADEAP-D-TVTGDIVFVLQQKEHPKFKR 266 (416)
Q Consensus 219 ~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~-~~~GDliv~i~~~~h~~f~R 266 (416)
+.++|.||+|+++|+.++++|+|.+.. + ...|||||++++.-+..++.
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSP 76 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCH
Confidence 357789999999999999999999743 3 37999999999987665553
No 103
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.8e-06 Score=68.29 Aligned_cols=59 Identities=31% Similarity=0.533 Sum_probs=50.1
Q ss_pred CCCCCCCcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 014903 5 APKKSNNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 64 (416)
Q Consensus 5 ~~~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~ 64 (416)
+++|+. ..---||||+++++.+.||.|+|+.-+.-|||+.+++=.-.+||||+++|...
T Consensus 50 ~~kMsr-~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 50 EPKMSR-REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred ccccch-HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 344432 34445999999999999999999999999999999998888899999999753
No 104
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.8e-05 Score=78.00 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=39.4
Q ss_pred EEEEEEEcCC--CccCCeEeecCCcCCCCCCCcccEEEEEEEecCC
Q 014903 219 KVLEVIVEKG--MQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHP 262 (416)
Q Consensus 219 ~~l~V~Ip~G--~~~G~~i~~~g~G~~~~~~~~GDliv~i~~~~h~ 262 (416)
..|++.++|| +.+|+++++.|+|++..+...|||||.+.|+-.+
T Consensus 279 r~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 279 RLLKLSSKPGEVISPGDTKRVEGEGMPIFRNPKGDLYIKFEVKFPK 324 (337)
T ss_pred ceEEEecCCCceeChhHEEeecCCCcccccCCCCcEEEEEEEEcCC
Confidence 4799999999 9999999999999996655699999999998766
No 105
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.76 E-value=1.2e-05 Score=82.99 Aligned_cols=27 Identities=37% Similarity=0.884 Sum_probs=15.7
Q ss_pred eccccccCCcccCceeeCCCCccccEE
Q 014903 146 ICSKCSGKGSKSGASMKCSGCQGTGMK 172 (416)
Q Consensus 146 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 172 (416)
.|+.|+|+|........|+.|+|+|..
T Consensus 4 ~C~~C~g~G~i~v~~e~c~vc~gtG~~ 30 (715)
T COG1107 4 KCPECGGKGKIVVGEEECPVCHGTGFS 30 (715)
T ss_pred cccccCCCceEeeeeeecccccccccc
Confidence 466666666555444556666666654
No 106
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=6.4e-05 Score=72.41 Aligned_cols=60 Identities=35% Similarity=0.823 Sum_probs=41.6
Q ss_pred eeeccccccCCccc---C-----------------ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCC
Q 014903 144 NVICSKCSGKGSKS---G-----------------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 203 (416)
Q Consensus 144 ~~~C~~C~G~G~~~---~-----------------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 203 (416)
..+|+.|+|.|.-. + ....|..|+|+| ..+|++|.|+|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G----------------~~~C~tC~grG~----- 256 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG----------------IKECHTCKGRGK----- 256 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC----------------cccCCcccCCCC-----
Confidence 46788888888321 1 113466666666 457888888885
Q ss_pred CCCCCCCCCcEEEEeEEEEEE
Q 014903 204 DRCPQCKGDKVVQEKKVLEVI 224 (416)
Q Consensus 204 ~~C~~C~G~g~v~~~~~l~V~ 224 (416)
.+|..|.|.|.+.....+.|.
T Consensus 257 k~C~TC~gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 257 KPCTTCSGTGSLLNYTRIVVY 277 (406)
T ss_pred cccccccCccceeeeEEEEEE
Confidence 679999998888777666665
No 107
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.55 E-value=4.5e-05 Score=57.88 Aligned_cols=44 Identities=34% Similarity=0.924 Sum_probs=30.3
Q ss_pred eeeeeccccccCCcccC----------ceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCc
Q 014903 142 SRNVICSKCSGKGSKSG----------ASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTG 197 (416)
Q Consensus 142 ~r~~~C~~C~G~G~~~~----------~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G 197 (416)
.....|+.|+|+|.... ...+|+.|+|+|.++ ...+|+.|+|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i------------~~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII------------EKDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-------------TSSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE------------CCCCCCCCCCcC
Confidence 34568999999998643 126899999999431 278999999986
No 108
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.25 E-value=0.001 Score=71.64 Aligned_cols=68 Identities=44% Similarity=0.870 Sum_probs=63.8
Q ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCcccccccccccccccc
Q 014903 12 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALK 79 (416)
Q Consensus 12 ~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~---~~F~~i~~AYevLsd~~kR~~YD~~G~~g~~ 79 (416)
.|||++|||+++|+.++||+|||+||++||||+++++ ++|++|++||++|+||.+|+.||+||..++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 5999999999999999999999999999999998753 6899999999999999999999999987764
No 109
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0011 Score=68.85 Aligned_cols=46 Identities=33% Similarity=0.803 Sum_probs=34.0
Q ss_pred eeeccccccCCcccC------c-------------eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEc
Q 014903 144 NVICSKCSGKGSKSG------A-------------SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 201 (416)
Q Consensus 144 ~~~C~~C~G~G~~~~------~-------------~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 201 (416)
...|+.|+|+|.... + ..+|+.|+|+|.+.. ..+|+.|.|+|++..
T Consensus 18 ~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v------------~~~c~~c~G~gkv~~ 82 (715)
T COG1107 18 EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV------------YDTCPECGGTGKVLT 82 (715)
T ss_pred eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE------------EeecccCCCceeEEe
Confidence 456999999996421 0 147999999996533 468999999998764
No 110
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.68 E-value=0.0013 Score=54.86 Aligned_cols=40 Identities=33% Similarity=0.840 Sum_probs=31.6
Q ss_pred eccccccCCcccC-----c--eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEc
Q 014903 146 ICSKCSGKGSKSG-----A--SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN 201 (416)
Q Consensus 146 ~C~~C~G~G~~~~-----~--~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~ 201 (416)
.|+.|+|+|.... . ..+|+.|+|+|. ..|+.|.|+|.+..
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk----------------~~C~~C~G~G~~~~ 100 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGS----------------LTCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCcce----------------eeCCCCCCCEEEee
Confidence 7999999997532 1 257999999992 35999999998754
No 111
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0016 Score=62.98 Aligned_cols=76 Identities=28% Similarity=0.700 Sum_probs=43.4
Q ss_pred eeecCceeeecceee---eeccccccCCcccCceeeCCCCccccE--------EEEEEecC-CcceeeeeeeCCCCCCCc
Q 014903 130 DLYLGTSKKLSLSRN---VICSKCSGKGSKSGASMKCSGCQGTGM--------KVSIRHLG-PSMIQQMQHPCNECKGTG 197 (416)
Q Consensus 130 e~~~G~~~~~~~~r~---~~C~~C~G~G~~~~~~~~C~~C~G~G~--------~~~~~~~g-pg~~~~~~~~C~~C~G~G 197 (416)
.++.|-...+.+... ..|..|.|.|. ..|+.|+|.|. .......| |---.-....|..|+|+|
T Consensus 170 ~mf~~~~~~~~vphs~~v~~ch~c~gRG~-----~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G 244 (406)
T KOG2813|consen 170 GMFSGVAHPAVVPHSMIVTFCHACLGRGA-----MVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRG 244 (406)
T ss_pred CcccccccceeccchHhhhhhhcccCCCc-----eeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCC
Confidence 344454444444433 35999999994 67999999992 11111112 000001234577777777
Q ss_pred eEEcCCCCCCCCCCCcEE
Q 014903 198 ETINDKDRCPQCKGDKVV 215 (416)
Q Consensus 198 ~~~~~~~~C~~C~G~g~v 215 (416)
. ..|++|+|+|.+
T Consensus 245 ~-----~~C~tC~grG~k 257 (406)
T KOG2813|consen 245 I-----KECHTCKGRGKK 257 (406)
T ss_pred c-----ccCCcccCCCCc
Confidence 4 667777777644
No 112
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0017 Score=58.91 Aligned_cols=51 Identities=37% Similarity=0.607 Sum_probs=44.1
Q ss_pred CcCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC---C--------hHHHHHHHHHHHHc
Q 014903 11 NTRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGG---D--------PEKFKELAQAYEVL 61 (416)
Q Consensus 11 ~~~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~---~--------~~~F~~i~~AYevL 61 (416)
..+.|.+|++...++..+|+++||++...+|||+-. . .+++++|++||+-+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 368899999999999999999999999999999732 2 27889999999753
No 113
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0046 Score=54.09 Aligned_cols=65 Identities=34% Similarity=0.604 Sum_probs=50.9
Q ss_pred CCCCCcCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCcccccccc
Q 014903 7 KKSNNTRYYEILGVSK--NASAEDLKKAYKKAAIKNHPDKGGD---------PEKFKELAQAYEVLSDPEKREIYD 71 (416)
Q Consensus 7 ~~~~~~~~Y~iLgv~~--~As~~eIk~Ayrkla~k~HPDk~~~---------~~~F~~i~~AYevLsd~~kR~~YD 71 (416)
+|....+||.+.|... ...++-++--|.-...+.|||+... .+.-.++|+||..|.||-+|+.|=
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4666789999997654 3344445558888999999998432 267889999999999999999984
No 114
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.55 E-value=0.0074 Score=55.07 Aligned_cols=29 Identities=31% Similarity=0.747 Sum_probs=14.9
Q ss_pred eeeccccccCCcccCceeeCCCCccccEE
Q 014903 144 NVICSKCSGKGSKSGASMKCSGCQGTGMK 172 (416)
Q Consensus 144 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 172 (416)
...|+.|+|+|.......+|+.|+|+|.+
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v 127 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRF 127 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEE
Confidence 45566666666543322445555555543
No 115
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.01 E-value=0.094 Score=44.96 Aligned_cols=52 Identities=31% Similarity=0.374 Sum_probs=38.7
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDP 64 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~ 64 (416)
.-..||+|++.++.++|.+.|.+|-..-+|+++++.=.=.+|..|.|.|..+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999998865556678888888644
No 116
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.02 Score=51.87 Aligned_cols=60 Identities=27% Similarity=0.452 Sum_probs=46.7
Q ss_pred CcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCccccccccc
Q 014903 13 RYYEILGVSKNASA--EDLKKAYKKAAIKNHPDKGGDP---------EKFKELAQAYEVLSDPEKREIYDQ 72 (416)
Q Consensus 13 ~~Y~iLgv~~~As~--~eIk~Ayrkla~k~HPDk~~~~---------~~F~~i~~AYevLsd~~kR~~YD~ 72 (416)
++....+..+.+.. +-++..|+.+++.||||+.... +.+..++.||.+|-||-+|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 34455555555543 3588999999999999997542 578999999999999999998753
No 117
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.40 E-value=0.087 Score=54.86 Aligned_cols=43 Identities=30% Similarity=0.517 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHc
Q 014903 19 GVSKNASAEDLKKAYKKAAIKNHPDKGGD-----------PEKFKELAQAYEVL 61 (416)
Q Consensus 19 gv~~~As~~eIk~Ayrkla~k~HPDk~~~-----------~~~F~~i~~AYevL 61 (416)
.+.-=.+.+.|||||||..|..||||-+- ++.|..+++|++..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 33444588999999999999999999642 14566666666654
No 118
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.26 Score=49.30 Aligned_cols=52 Identities=37% Similarity=0.645 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHcCCccccccccccc
Q 014903 23 NASAEDLKKAYKKAAIKNHPDKGG--------DPEKFKELAQAYEVLSDPEKREIYDQYG 74 (416)
Q Consensus 23 ~As~~eIk~Ayrkla~k~HPDk~~--------~~~~F~~i~~AYevLsd~~kR~~YD~~G 74 (416)
-++..+|..+|+..++.+||++-. ..+.|++|.+||+||++.++|..+|..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 367889999999999999999863 2478999999999999977767777643
No 119
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=88.91 E-value=0.76 Score=42.40 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 014903 21 SKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLS 62 (416)
Q Consensus 21 ~~~As~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLs 62 (416)
+++||.+||.+|+.+|-.+| ..|++.-..|-.||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 58999999999999999998 456677888999998553
No 120
>PF13446 RPT: A repeated domain in UCH-protein
Probab=87.28 E-value=0.93 Score=33.57 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=33.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSD 63 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd 63 (416)
+-|+.|||+++++++.|-.+|+.... .++.......+|..++.+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 45999999999999999999988765 223455566677777654
No 121
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=85.71 E-value=0.7 Score=40.73 Aligned_cols=22 Identities=32% Similarity=0.865 Sum_probs=11.6
Q ss_pred eccccccCCcccCceeeCCCCccccEE
Q 014903 146 ICSKCSGKGSKSGASMKCSGCQGTGMK 172 (416)
Q Consensus 146 ~C~~C~G~G~~~~~~~~C~~C~G~G~~ 172 (416)
.|..|.|.+. .+|..|+|+=.+
T Consensus 101 ~C~~Cgg~rf-----v~C~~C~Gs~k~ 122 (147)
T cd03031 101 VCEGCGGARF-----VPCSECNGSCKV 122 (147)
T ss_pred CCCCCCCcCe-----EECCCCCCcceE
Confidence 4666655543 346666655433
No 122
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=0.71 Score=44.40 Aligned_cols=51 Identities=29% Similarity=0.655 Sum_probs=33.2
Q ss_pred eeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCC
Q 014903 145 VICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCK 210 (416)
Q Consensus 145 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~ 210 (416)
..|..|.|.+. .+|..|+|+=.+... ... .-...+|+.|+-.|. .+|+.|.
T Consensus 230 ~~C~~CGg~rF-----lpC~~C~GS~kv~~~--~~~---~~~~~rC~~CNENGL-----vrCp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGARF-----LPCSNCHGSCKVHEE--EED---DGGVLRCLECNENGL-----VRCPVCS 280 (281)
T ss_pred CcCCCcCCcce-----EecCCCCCceeeeee--ccC---CCcEEECcccCCCCc-----eeCCccC
Confidence 56777777764 468999988754331 111 112467999998886 4588885
No 123
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=1 Score=44.15 Aligned_cols=53 Identities=30% Similarity=0.670 Sum_probs=37.7
Q ss_pred eecceeeeeccccccCCcccC-----ce-eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCC
Q 014903 138 KLSLSRNVICSKCSGKGSKSG-----AS-MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 203 (416)
Q Consensus 138 ~~~~~r~~~C~~C~G~G~~~~-----~~-~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~ 203 (416)
.........|..|.|+|.... .. .+|+.|+|.|.+ ....|..|.|.|.+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~-------------~~~~c~~~~g~~~v~~~k 233 (288)
T KOG0715|consen 175 AEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLV-------------LRDNCQACSGAGQVRRAK 233 (288)
T ss_pred cccccccccchhhhCcccccccccCCcceeeccccccccee-------------ccchHHHhhcchhhhhhe
Confidence 445667788999999993322 11 369999999953 234499999999665433
No 124
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.74 E-value=1.4 Score=49.96 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=13.2
Q ss_pred EECCCC-CCHHHHHHHHHHCC
Q 014903 339 VEFPDS-LTPDQVKALEAILP 358 (416)
Q Consensus 339 V~fP~~-l~~~~~~~L~~~lp 358 (416)
++=|.. |++..+..|.++|.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~ 875 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQ 875 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHH
Confidence 345765 88877777666664
No 125
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=77.54 E-value=7.6 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=14.6
Q ss_pred EEEEEEcCCCccCCeEeecC
Q 014903 220 VLEVIVEKGMQNGQKITFPG 239 (416)
Q Consensus 220 ~l~V~Ip~G~~~G~~i~~~g 239 (416)
.|.+.||||...|..-++.|
T Consensus 81 El~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 81 ELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred eeeEEecCCCCCcEEEehHH
Confidence 67788888887777666654
No 126
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=77.04 E-value=16 Score=33.65 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=21.3
Q ss_pred eCCCCccccEEEEEEec-CC--cceeeeeeeCCCCCCCc
Q 014903 162 KCSGCQGTGMKVSIRHL-GP--SMIQQMQHPCNECKGTG 197 (416)
Q Consensus 162 ~C~~C~G~G~~~~~~~~-gp--g~~~~~~~~C~~C~G~G 197 (416)
.|+.|++.|........ =| +-+-.+...|+.|+-+-
T Consensus 2 ~Cp~C~~~~~~~~~~~~~IP~F~evii~sf~C~~CGyr~ 40 (192)
T TIGR00310 2 DCPSCGGECETVMKTVNDIPYFGEVLETSTICEHCGYRS 40 (192)
T ss_pred cCCCCCCCCEEEEEEEcCCCCcceEEEEEEECCCCCCcc
Confidence 47777777664333322 33 33445677899997664
No 127
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=73.62 E-value=3.8 Score=45.37 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=17.5
Q ss_pred CCeEEEEEEECCCC-CCHHHHHHHHHHCC
Q 014903 331 GKLYIHFTVEFPDS-LTPDQVKALEAILP 358 (416)
Q Consensus 331 GdL~v~~~V~fP~~-l~~~~~~~L~~~lp 358 (416)
..|||- +=|.. |..+++++|-++|.
T Consensus 844 ~TlYiL---DEPTTGLH~~Di~kLl~VL~ 869 (935)
T COG0178 844 KTLYIL---DEPTTGLHFDDIKKLLEVLH 869 (935)
T ss_pred CeEEEe---CCCCCCCCHHHHHHHHHHHH
Confidence 467763 56877 88888777776664
No 128
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=3.8 Score=39.51 Aligned_cols=40 Identities=28% Similarity=0.785 Sum_probs=31.0
Q ss_pred eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEc--C----CCCCCCCCCCcEEE
Q 014903 161 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIN--D----KDRCPQCKGDKVVQ 216 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~--~----~~~C~~C~G~g~v~ 216 (416)
..|..|.|.++ .+|..|+|+-+++. . -.+|..|+=.|.+.
T Consensus 230 ~~C~~CGg~rF----------------lpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvr 275 (281)
T KOG2824|consen 230 GVCESCGGARF----------------LPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVR 275 (281)
T ss_pred CcCCCcCCcce----------------EecCCCCCceeeeeeccCCCcEEECcccCCCCcee
Confidence 36999998883 58999999988876 1 14899998887765
No 129
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=70.38 E-value=3.3 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=15.3
Q ss_pred CeEEEEEEECCCC-CCHHHHHHHHHHCC
Q 014903 332 KLYIHFTVEFPDS-LTPDQVKALEAILP 358 (416)
Q Consensus 332 dL~v~~~V~fP~~-l~~~~~~~L~~~lp 358 (416)
+||| ++=|.. |++..+..|.++|.
T Consensus 853 ~llI---LDEPtsGLD~~~~~~L~~~L~ 877 (943)
T PRK00349 853 TLYI---LDEPTTGLHFEDIRKLLEVLH 877 (943)
T ss_pred eEEE---EECCCCCCCHHHHHHHHHHHH
Confidence 5554 356766 88887766666654
No 130
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=68.62 E-value=4.2 Score=46.92 Aligned_cols=61 Identities=18% Similarity=0.508 Sum_probs=37.1
Q ss_pred cCceeeecceeeeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcC---CCCCCCC
Q 014903 133 LGTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND---KDRCPQC 209 (416)
Q Consensus 133 ~G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~---~~~C~~C 209 (416)
.++...+.+. ...|+.|...... ..|+.|+..= .....|+.|+.. +... ...|+.|
T Consensus 657 ~~G~ieVEV~-~rkCPkCG~~t~~----~fCP~CGs~t--------------e~vy~CPsCGae--v~~des~a~~CP~C 715 (1337)
T PRK14714 657 EGGVIEVEVG-RRRCPSCGTETYE----NRCPDCGTHT--------------EPVYVCPDCGAE--VPPDESGRVECPRC 715 (1337)
T ss_pred cCCeEEEEEE-EEECCCCCCcccc----ccCcccCCcC--------------CCceeCccCCCc--cCCCccccccCCCC
Confidence 3444445553 5679999875432 3899998652 113479999874 1110 2379999
Q ss_pred CCCcE
Q 014903 210 KGDKV 214 (416)
Q Consensus 210 ~G~g~ 214 (416)
...-+
T Consensus 716 Gtplv 720 (1337)
T PRK14714 716 DVELT 720 (1337)
T ss_pred CCccc
Confidence 85533
No 131
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=67.45 E-value=3.5 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=18.6
Q ss_pred CCeEEEEEEECCCC-CCHHHHHHHHHHCC
Q 014903 331 GKLYIHFTVEFPDS-LTPDQVKALEAILP 358 (416)
Q Consensus 331 GdL~v~~~V~fP~~-l~~~~~~~L~~~lp 358 (416)
..||| .+=|.. |.+.+.+.|-++|.
T Consensus 1721 ~~lyi---lDEPt~GLh~~d~~~Ll~~l~ 1746 (1809)
T PRK00635 1721 PTLFL---LDEIATSLDNQQKSALLVQLR 1746 (1809)
T ss_pred CcEEE---EcCCCCCCCHHHHHHHHHHHH
Confidence 46776 456877 99999888877754
No 132
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=63.30 E-value=5.4 Score=20.58 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHcC
Q 014903 50 KFKELAQAYEVLS 62 (416)
Q Consensus 50 ~F~~i~~AYevLs 62 (416)
+|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 6888999999885
No 133
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=59.39 E-value=12 Score=33.04 Aligned_cols=39 Identities=36% Similarity=0.991 Sum_probs=31.7
Q ss_pred eeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCC-------CCCCCCCCCcEE
Q 014903 161 MKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK-------DRCPQCKGDKVV 215 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~-------~~C~~C~G~g~v 215 (416)
..|..|.|.++ .+|..|+|+-+++... .+|+.|+-.|.+
T Consensus 100 ~~C~~Cgg~rf----------------v~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 100 GVCEGCGGARF----------------VPCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCcCe----------------EECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 46999999884 5899999999887655 489999877754
No 134
>PRK04023 DNA polymerase II large subunit; Validated
Probab=58.98 E-value=6.5 Score=44.43 Aligned_cols=69 Identities=16% Similarity=0.376 Sum_probs=42.6
Q ss_pred eeeeec-CceeeecceeeeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCC
Q 014903 128 LEDLYL-GTSKKLSLSRNVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC 206 (416)
Q Consensus 128 Lee~~~-G~~~~~~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C 206 (416)
+.+++. ++...+.+. ...|+.|.-.+ ....|+.|+..- .....|+.|.-... ...|
T Consensus 610 i~~A~~~~g~~eVEVg-~RfCpsCG~~t----~~frCP~CG~~T--------------e~i~fCP~CG~~~~----~y~C 666 (1121)
T PRK04023 610 INKAAKYKGTIEVEIG-RRKCPSCGKET----FYRRCPFCGTHT--------------EPVYRCPRCGIEVE----EDEC 666 (1121)
T ss_pred HHHHHhcCCceeeccc-CccCCCCCCcC----CcccCCCCCCCC--------------CcceeCccccCcCC----CCcC
Confidence 455665 555555554 35699997664 335799998751 11347999954332 3679
Q ss_pred CCCCCCcEEEEeE
Q 014903 207 PQCKGDKVVQEKK 219 (416)
Q Consensus 207 ~~C~G~g~v~~~~ 219 (416)
++|...-.....+
T Consensus 667 PKCG~El~~~s~~ 679 (1121)
T PRK04023 667 EKCGREPTPYSKR 679 (1121)
T ss_pred CCCCCCCCccceE
Confidence 9998664433333
No 135
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=57.36 E-value=8.1 Score=44.16 Aligned_cols=34 Identities=35% Similarity=0.646 Sum_probs=17.9
Q ss_pred CCCCCCCceEEc-------CCCCCCCCCCCcEEEEeEEEEEEE
Q 014903 190 CNECKGTGETIN-------DKDRCPQCKGDKVVQEKKVLEVIV 225 (416)
Q Consensus 190 C~~C~G~G~~~~-------~~~~C~~C~G~g~v~~~~~l~V~I 225 (416)
|+.|.|.|.+.. -...|+.|+|+++..+. ++|.+
T Consensus 741 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~--l~v~~ 781 (943)
T PRK00349 741 CEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET--LEVKY 781 (943)
T ss_pred CCcccccceEEEEeccCCCccccCccccCccccccc--eEEEE
Confidence 555555555431 12466666666665543 44443
No 136
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.80 E-value=5.3 Score=45.50 Aligned_cols=33 Identities=36% Similarity=0.678 Sum_probs=17.9
Q ss_pred CCCCCCCceEEc-------CCCCCCCCCCCcEEEEeEEEEEE
Q 014903 190 CNECKGTGETIN-------DKDRCPQCKGDKVVQEKKVLEVI 224 (416)
Q Consensus 190 C~~C~G~G~~~~-------~~~~C~~C~G~g~v~~~~~l~V~ 224 (416)
|+.|.|.|.+.. ....|+.|+|+++..+ .++|.
T Consensus 739 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e--~l~v~ 778 (924)
T TIGR00630 739 CEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRE--TLEVK 778 (924)
T ss_pred CCCCccceEEEEEccCCCCcccCCCCcCCceeChH--HHhce
Confidence 666666655431 1346777777666554 34444
No 137
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=53.32 E-value=6.6 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=23.3
Q ss_pred ccEEEEEE-ecCCcceeeeeeeCCCCCCCceEEc
Q 014903 169 TGMKVSIR-HLGPSMIQQMQHPCNECKGTGETIN 201 (416)
Q Consensus 169 ~G~~~~~~-~~gpg~~~~~~~~C~~C~G~G~~~~ 201 (416)
-|.+.++| +.++.+...+..+||.|+|+|.+..
T Consensus 371 lGLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 371 FGLVEMTRKRLRESLMEVLGTVCPHCSGTGIVKT 404 (414)
T ss_pred CcceEEeccccCcChHHHhcCCCCCCcCeeEEcc
Confidence 35554444 4567777778888999999998754
No 138
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=51.96 E-value=16 Score=22.48 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 014903 26 AEDLKKAYKKAAIKNHP 42 (416)
Q Consensus 26 ~~eIk~Ayrkla~k~HP 42 (416)
.++.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36788999999999993
No 139
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=51.92 E-value=27 Score=31.30 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=13.3
Q ss_pred EEEEEEcCCC-ccCCeEeecC
Q 014903 220 VLEVIVEKGM-QNGQKITFPG 239 (416)
Q Consensus 220 ~l~V~Ip~G~-~~G~~i~~~g 239 (416)
.|.+.||||. ..|..=++.|
T Consensus 78 El~lei~pg~~~~G~iTTVEG 98 (163)
T TIGR00340 78 ELGIKIEPGPASQGYISNIEG 98 (163)
T ss_pred ceeEEecCCCcCCceEEehHh
Confidence 5778888887 4665555644
No 140
>PF12991 DUF3875: Domain of unknown function, B. Theta Gene description (DUF3875); InterPro: IPR024451 This domain of unknown function is found in proteins from Bacteroidetes, including the conjugation system ATPase, TraG.
Probab=50.83 E-value=19 Score=26.01 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=19.9
Q ss_pred CCCCeEEEEEEECCCC--CCHHHHHHH
Q 014903 329 MKGKLYIHFTVEFPDS--LTPDQVKAL 353 (416)
Q Consensus 329 ~~GdL~v~~~V~fP~~--l~~~~~~~L 353 (416)
..||+.|-|+|.+|+- +|.++.+.|
T Consensus 26 k~gDiTv~f~v~LPEiFtls~~eYea~ 52 (54)
T PF12991_consen 26 KNGDITVAFRVELPEIFTLSEAEYEAI 52 (54)
T ss_pred cCCCEEEEEEecCCeeEEechhHhHHh
Confidence 3699999999999997 666665544
No 141
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=50.79 E-value=17 Score=29.83 Aligned_cols=52 Identities=31% Similarity=0.621 Sum_probs=36.4
Q ss_pred CCCCCCCH-HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCcccccccc-cccc
Q 014903 19 GVSKNASA-EDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYD-QYGE 75 (416)
Q Consensus 19 gv~~~As~-~eIk~Ayrkla~k~HPDk~~~~~~F~~i~~AYevLsd~~kR~~YD-~~G~ 75 (416)
|++|++.. .+|-+.++.+...+++ .+++.+..|.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhccccCCH
Confidence 56665543 3577778888888876 5678999999999 78999999998 6654
No 142
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=48.50 E-value=94 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEEEEcCCCccCCeEeec-CCcCCCCCCCcccEE
Q 014903 219 KVLEVIVEKGMQNGQKITFP-GEADEAPDTVTGDIV 253 (416)
Q Consensus 219 ~~l~V~Ip~G~~~G~~i~~~-g~G~~~~~~~~GDli 253 (416)
..++|.|..-...|.-|.-. |.---.++..|||.+
T Consensus 149 e~~~v~Ie~l~~~G~GVak~~g~~vfV~galpGE~V 184 (201)
T PRK12336 149 KTYEVEITGTGRKGDGVAKKGKYTIFVPGAKKGEVV 184 (201)
T ss_pred CEEEEEEEEccCCCceEEEECCEEEEeCCCCCCCEE
Confidence 34567676666666665422 211125677788875
No 143
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=47.32 E-value=36 Score=28.48 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHcCCc
Q 014903 22 KNASAEDLKKAYKKAAIKNHPDKGGD--------PEKFKELAQAYEVLSDP 64 (416)
Q Consensus 22 ~~As~~eIk~Ayrkla~k~HPDk~~~--------~~~F~~i~~AYevLsd~ 64 (416)
+..+..++++|.|.+-++-|||.-.+ ++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45678899999999999999996432 35677777777777643
No 144
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=46.57 E-value=12 Score=35.65 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=8.8
Q ss_pred eeCCCCCCCceEEc
Q 014903 188 HPCNECKGTGETIN 201 (416)
Q Consensus 188 ~~C~~C~G~G~~~~ 201 (416)
.+||+|+|+|++.+
T Consensus 39 vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 39 VTCPTCQGTGRIPR 52 (238)
T ss_pred CcCCCCcCCccCCc
Confidence 46777777776543
No 145
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=43.31 E-value=7.9 Score=43.01 Aligned_cols=53 Identities=23% Similarity=0.569 Sum_probs=0.0
Q ss_pred eeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCCcEEEEe
Q 014903 144 NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGDKVVQEK 218 (416)
Q Consensus 144 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~g~v~~~ 218 (416)
...|+.|.-.+. ...|+.|...= ...-.|+.|+-.- ..+.|++|.-.......
T Consensus 655 ~r~Cp~Cg~~t~----~~~Cp~CG~~T--------------~~~~~Cp~C~~~~----~~~~C~~C~~~~~~~~~ 707 (900)
T PF03833_consen 655 RRRCPKCGKETF----YNRCPECGSHT--------------EPVYVCPDCGIEV----EEDECPKCGRETTSYSK 707 (900)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCcccCCcch----hhcCcccCCcc--------------ccceecccccccc----CccccccccccCcccce
Confidence 346888854432 35688886542 2245688886432 24689999766443333
No 146
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=43.28 E-value=32 Score=38.21 Aligned_cols=60 Identities=23% Similarity=0.617 Sum_probs=38.7
Q ss_pred Cceeeeccee-----eeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCC
Q 014903 134 GTSKKLSLSR-----NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQ 208 (416)
Q Consensus 134 G~~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~ 208 (416)
|...-+-++| ...|..|. ....|+.|... +..++.. -+..|..|+-...+ ...|+.
T Consensus 420 geQ~llflnRRGys~~l~C~~Cg-------~v~~Cp~Cd~~---lt~H~~~------~~L~CH~Cg~~~~~---p~~Cp~ 480 (730)
T COG1198 420 GEQVLLFLNRRGYAPLLLCRDCG-------YIAECPNCDSP---LTLHKAT------GQLRCHYCGYQEPI---PQSCPE 480 (730)
T ss_pred CCeEEEEEccCCccceeecccCC-------CcccCCCCCcc---eEEecCC------CeeEeCCCCCCCCC---CCCCCC
Confidence 4445555554 47799994 33679999876 2222221 25689999877433 378999
Q ss_pred CCCC
Q 014903 209 CKGD 212 (416)
Q Consensus 209 C~G~ 212 (416)
|.+.
T Consensus 481 Cgs~ 484 (730)
T COG1198 481 CGSE 484 (730)
T ss_pred CCCC
Confidence 9876
No 147
>PRK11712 ribonuclease G; Provisional
Probab=42.50 E-value=11 Score=39.75 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=23.1
Q ss_pred cEEEEEE-ecCCcceeeeeeeCCCCCCCceEEc
Q 014903 170 GMKVSIR-HLGPSMIQQMQHPCNECKGTGETIN 201 (416)
Q Consensus 170 G~~~~~~-~~gpg~~~~~~~~C~~C~G~G~~~~ 201 (416)
|.+.++| +.++.+...+..+||.|+|+|.+..
T Consensus 384 GLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 384 GLVEMTRKRTRESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred ceEEEEecccCCChHHHhcCCCCCCCCCCCcCC
Confidence 5554444 4577777778888999999997654
No 148
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=40.89 E-value=44 Score=23.77 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=6.9
Q ss_pred eCCCCccccE
Q 014903 162 KCSGCQGTGM 171 (416)
Q Consensus 162 ~C~~C~G~G~ 171 (416)
+|+-|.|...
T Consensus 3 PCPfCGg~~~ 12 (53)
T TIGR03655 3 PCPFCGGADV 12 (53)
T ss_pred CCCCCCCcce
Confidence 5777777665
No 149
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=40.22 E-value=14 Score=30.87 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=20.5
Q ss_pred eeeeCCCCCCCceEEcCCCCCCCCCCC
Q 014903 186 MQHPCNECKGTGETINDKDRCPQCKGD 212 (416)
Q Consensus 186 ~~~~C~~C~G~G~~~~~~~~C~~C~G~ 212 (416)
.+..||.|+-.-+..-..|.|..|+-.
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~p 94 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKEP 94 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCCc
Confidence 467788888766666667999999754
No 150
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=39.16 E-value=66 Score=23.85 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=22.8
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 287 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 287 ~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
...+.|-+|+.+-|.+|.+..+++|+++....
T Consensus 30 r~r~~t~~G~ei~i~L~r~~~L~~GDvL~~d~ 61 (65)
T PF02814_consen 30 RLRLTTDDGREIGIDLPRGTVLRDGDVLYLDD 61 (65)
T ss_dssp EEEEE-TTS-EEEEE-SSTTT--TTEEEEECT
T ss_pred EEEEECCCCCEEEEECCCCcccCCCCEEEeCC
Confidence 45678889999999999999999999987654
No 151
>PRK02935 hypothetical protein; Provisional
Probab=38.01 E-value=19 Score=29.76 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=20.8
Q ss_pred eeeeCCCCCCCceEEcCCCCCCCCCCC
Q 014903 186 MQHPCNECKGTGETINDKDRCPQCKGD 212 (416)
Q Consensus 186 ~~~~C~~C~G~G~~~~~~~~C~~C~G~ 212 (416)
.+..||.|+=.-+..-+.|.|..|+-.
T Consensus 69 vqV~CP~C~K~TKmLGrvD~CM~C~~P 95 (110)
T PRK02935 69 VQVICPSCEKPTKMLGRVDACMHCNQP 95 (110)
T ss_pred eeeECCCCCchhhhccceeecCcCCCc
Confidence 467899998776666677999999743
No 152
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=36.38 E-value=13 Score=24.48 Aligned_cols=9 Identities=33% Similarity=1.029 Sum_probs=4.9
Q ss_pred eeCCCCccc
Q 014903 161 MKCSGCQGT 169 (416)
Q Consensus 161 ~~C~~C~G~ 169 (416)
.+|+.|+..
T Consensus 3 i~CP~C~~~ 11 (37)
T PF13719_consen 3 ITCPNCQTR 11 (37)
T ss_pred EECCCCCce
Confidence 356666544
No 153
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=36.23 E-value=17 Score=34.54 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=11.1
Q ss_pred eeeeccccccCCcccC
Q 014903 143 RNVICSKCSGKGSKSG 158 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~ 158 (416)
..+.||+|+|+|..+.
T Consensus 37 ~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 37 DSVTCPTCQGTGRIPR 52 (238)
T ss_pred CCCcCCCCcCCccCCc
Confidence 3457888888887653
No 154
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=36.10 E-value=17 Score=40.62 Aligned_cols=33 Identities=33% Similarity=0.779 Sum_probs=25.3
Q ss_pred eCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCce
Q 014903 162 KCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGE 198 (416)
Q Consensus 162 ~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~ 198 (416)
.|..|+|.|++.....+-| .+-.+|+.|+|+..
T Consensus 732 RCe~C~GdG~ikIeM~FLp----dVyv~CevC~GkRY 764 (935)
T COG0178 732 RCEACQGDGVIKIEMHFLP----DVYVPCEVCHGKRY 764 (935)
T ss_pred CCccccCCceEEEEeccCC----CceeeCCCcCCccc
Confidence 5999999998766554444 45689999999875
No 155
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=35.74 E-value=37 Score=33.70 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=7.1
Q ss_pred eeeeccccccC
Q 014903 143 RNVICSKCSGK 153 (416)
Q Consensus 143 r~~~C~~C~G~ 153 (416)
....||.|.+.
T Consensus 186 ~~~~CPvCGs~ 196 (309)
T PRK03564 186 QRQFCPVCGSM 196 (309)
T ss_pred CCCCCCCCCCc
Confidence 34567777665
No 156
>PRK05580 primosome assembly protein PriA; Validated
Probab=34.54 E-value=53 Score=36.28 Aligned_cols=61 Identities=25% Similarity=0.603 Sum_probs=36.9
Q ss_pred Cceeeeccee-----eeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCC
Q 014903 134 GTSKKLSLSR-----NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQ 208 (416)
Q Consensus 134 G~~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~ 208 (416)
|...-+-++| .+.|..|.- ...|+.|.+ .+... . ..-...|..|+.+-. ....|+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~-------~~~C~~C~~-~l~~h-~-------~~~~l~Ch~Cg~~~~---~~~~Cp~ 426 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGW-------VAECPHCDA-SLTLH-R-------FQRRLRCHHCGYQEP---IPKACPE 426 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcC-------ccCCCCCCC-ceeEE-C-------CCCeEECCCCcCCCC---CCCCCCC
Confidence 4444444544 467888853 357999987 32221 1 112457999975533 3478999
Q ss_pred CCCCc
Q 014903 209 CKGDK 213 (416)
Q Consensus 209 C~G~g 213 (416)
|.+..
T Consensus 427 Cg~~~ 431 (679)
T PRK05580 427 CGSTD 431 (679)
T ss_pred CcCCe
Confidence 98763
No 157
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=34.47 E-value=30 Score=34.79 Aligned_cols=21 Identities=57% Similarity=1.230 Sum_probs=14.5
Q ss_pred eeeccccccCCcccCceeeCCCCccccEE
Q 014903 144 NVICSKCSGKGSKSGASMKCSGCQGTGMK 172 (416)
Q Consensus 144 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 172 (416)
.+.|..|.|.| |..|++.|.+
T Consensus 260 dv~~~~~~g~g--------c~~ck~~~Wi 280 (339)
T PRK00488 260 DVSCFKCGGKG--------CRVCKGTGWL 280 (339)
T ss_pred EEEEeccCCCc--------ccccCCCCce
Confidence 46677777765 7777777754
No 158
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=33.69 E-value=17 Score=44.36 Aligned_cols=30 Identities=30% Similarity=0.732 Sum_probs=18.2
Q ss_pred eCCCCCCCceEEc-------CCCCCCCCCCCcEEEEe
Q 014903 189 PCNECKGTGETIN-------DKDRCPQCKGDKVVQEK 218 (416)
Q Consensus 189 ~C~~C~G~G~~~~-------~~~~C~~C~G~g~v~~~ 218 (416)
.|+.|.|.|.+.- -...|..|+|+++..+.
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~ 1645 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLA 1645 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHH
Confidence 4777777775432 22467777777765543
No 159
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.42 E-value=50 Score=28.22 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=13.2
Q ss_pred EEEEEEEcCCCccCCeEeec
Q 014903 219 KVLEVIVEKGMQNGQKITFP 238 (416)
Q Consensus 219 ~~l~V~Ip~G~~~G~~i~~~ 238 (416)
..+++.-+.+.+.||.+.+.
T Consensus 42 ~~~~~~~~~~~~~GD~V~v~ 61 (135)
T PF04246_consen 42 ITFRAPNPIGAKVGDRVEVE 61 (135)
T ss_pred EEEEecCCCCCCCCCEEEEE
Confidence 45666667777777766554
No 160
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=32.51 E-value=27 Score=25.66 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=12.7
Q ss_pred eeEeeeeeeecCceee
Q 014903 123 PLKVSLEDLYLGTSKK 138 (416)
Q Consensus 123 ~l~vsLee~~~G~~~~ 138 (416)
.++++|+++.+|..+.
T Consensus 30 RFeIsLeDl~~GE~VA 45 (67)
T COG5216 30 RFEISLEDLRNGEVVA 45 (67)
T ss_pred EeEEEHHHhhCCceEE
Confidence 3789999999987544
No 161
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=32.04 E-value=50 Score=21.31 Aligned_cols=10 Identities=60% Similarity=1.414 Sum_probs=5.5
Q ss_pred eCCCCccccE
Q 014903 162 KCSGCQGTGM 171 (416)
Q Consensus 162 ~C~~C~G~G~ 171 (416)
.|+.|++.|.
T Consensus 5 ~C~~C~~~~i 14 (33)
T PF08792_consen 5 KCSKCGGNGI 14 (33)
T ss_pred EcCCCCCCeE
Confidence 4555555553
No 162
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=31.46 E-value=32 Score=37.69 Aligned_cols=49 Identities=24% Similarity=0.720 Sum_probs=30.6
Q ss_pred eeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCCC
Q 014903 145 VICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGD 212 (416)
Q Consensus 145 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G~ 212 (416)
.+|+.|.-.=. ....-|+.|+..- ....|+.|+-. +......|+.|.-+
T Consensus 2 ~~Cp~Cg~~n~--~~akFC~~CG~~l---------------~~~~Cp~CG~~--~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENP--NNNRFCQKCGTSL---------------THKPCPQCGTE--VPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCC--CCCccccccCCCC---------------CCCcCCCCCCC--CCcccccccccCCc
Confidence 47999965421 2235699994432 12479999755 23345789999755
No 163
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=31.29 E-value=1.1e+02 Score=22.28 Aligned_cols=14 Identities=29% Similarity=0.838 Sum_probs=8.9
Q ss_pred CCCCCCCCCcEEEE
Q 014903 204 DRCPQCKGDKVVQE 217 (416)
Q Consensus 204 ~~C~~C~G~g~v~~ 217 (416)
-.|++|+-.-.+..
T Consensus 29 lyCpKCK~EtlI~v 42 (55)
T PF14205_consen 29 LYCPKCKQETLIDV 42 (55)
T ss_pred ccCCCCCceEEEEe
Confidence 46888876655443
No 164
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=31.10 E-value=53 Score=29.13 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=19.0
Q ss_pred eCCCCcccc-EEEEEEecCCcceeeeeeeCCCCCCC
Q 014903 162 KCSGCQGTG-MKVSIRHLGPSMIQQMQHPCNECKGT 196 (416)
Q Consensus 162 ~C~~C~G~G-~~~~~~~~gpg~~~~~~~~C~~C~G~ 196 (416)
.||.|...- .++..+-+.||..-.....|+.|+.+
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~ 37 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKR 37 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCc
Confidence 477777655 45555556665322222556666544
No 165
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=30.86 E-value=73 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=17.2
Q ss_pred eeCCCCccccEEEEEEecCC--cceeeeeeeCCCCCC
Q 014903 161 MKCSGCQGTGMKVSIRHLGP--SMIQQMQHPCNECKG 195 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gp--g~~~~~~~~C~~C~G 195 (416)
..|+.|+..|......-.=| +-+-.+...|+.|+-
T Consensus 2 s~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGy 38 (161)
T PF03367_consen 2 SLCPNCGENGTTRILLTDIPYFKEVIIMSFECEHCGY 38 (161)
T ss_dssp EE-TTTSSCCEEEEEEEEETTTEEEEEEEEE-TTT--
T ss_pred CcCCCCCCCcEEEEEEEcCCCCceEEEEEeECCCCCC
Confidence 35888888886433222223 234445567888863
No 166
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=29.71 E-value=91 Score=20.88 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=11.6
Q ss_pred eCCCCccccEEEEEEecC
Q 014903 162 KCSGCQGTGMKVSIRHLG 179 (416)
Q Consensus 162 ~C~~C~G~G~~~~~~~~g 179 (416)
.|+.|+....+....|+.
T Consensus 2 ~Cp~C~~~~a~~~q~Q~R 19 (40)
T smart00440 2 PCPKCGNREATFFQLQTR 19 (40)
T ss_pred cCCCCCCCeEEEEEEccc
Confidence 577787777766555443
No 167
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=29.46 E-value=62 Score=27.02 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=5.7
Q ss_pred eCCCCCCCce
Q 014903 189 PCNECKGTGE 198 (416)
Q Consensus 189 ~C~~C~G~G~ 198 (416)
.||.|++...
T Consensus 88 ~CP~Cgs~~~ 97 (113)
T PRK12380 88 QCPHCHGERL 97 (113)
T ss_pred cCcCCCCCCc
Confidence 4666665543
No 168
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.44 E-value=52 Score=34.96 Aligned_cols=61 Identities=25% Similarity=0.617 Sum_probs=36.4
Q ss_pred Cceeeeccee-----eeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCC
Q 014903 134 GTSKKLSLSR-----NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQ 208 (416)
Q Consensus 134 G~~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~ 208 (416)
|...-+-++| .+.|..|.- ...|+.|.+. +... +. .-...|..|+-+-. ....|+.
T Consensus 198 g~qvLvflnrrGya~~~~C~~Cg~-------~~~C~~C~~~-l~~h-~~-------~~~l~Ch~Cg~~~~---~~~~Cp~ 258 (505)
T TIGR00595 198 GEQSILFLNRRGYSKNLLCRSCGY-------ILCCPNCDVS-LTYH-KK-------EGKLRCHYCGYQEP---IPKTCPQ 258 (505)
T ss_pred CCcEEEEEeCCcCCCeeEhhhCcC-------ccCCCCCCCc-eEEe-cC-------CCeEEcCCCcCcCC---CCCCCCC
Confidence 4444444443 357888853 3579999764 2211 11 12467999975433 3478999
Q ss_pred CCCCc
Q 014903 209 CKGDK 213 (416)
Q Consensus 209 C~G~g 213 (416)
|.+..
T Consensus 259 C~s~~ 263 (505)
T TIGR00595 259 CGSED 263 (505)
T ss_pred CCCCe
Confidence 98764
No 169
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=29.22 E-value=27 Score=29.13 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=4.5
Q ss_pred eeCCCCCCCc
Q 014903 188 HPCNECKGTG 197 (416)
Q Consensus 188 ~~C~~C~G~G 197 (416)
..||.|++..
T Consensus 87 ~~CP~Cgs~~ 96 (113)
T PF01155_consen 87 FSCPRCGSPD 96 (113)
T ss_dssp HH-SSSSSS-
T ss_pred CCCcCCcCCC
Confidence 4466666554
No 170
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=29.02 E-value=2e+02 Score=26.61 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=13.6
Q ss_pred EEEEEEcCC--CccCCeEeecCC
Q 014903 220 VLEVIVEKG--MQNGQKITFPGE 240 (416)
Q Consensus 220 ~l~V~Ip~G--~~~G~~i~~~g~ 240 (416)
.-.|.+||| ++-|+.|.+.++
T Consensus 64 ~~~vel~~gE~l~vGDei~vd~e 86 (201)
T COG1326 64 TKEVELDPGETLKVGDEIEVDGE 86 (201)
T ss_pred ceeEecCCCCeEecCCEEEEcCC
Confidence 455667777 666777776654
No 171
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=28.67 E-value=85 Score=27.94 Aligned_cols=47 Identities=19% Similarity=0.412 Sum_probs=32.3
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccCCCC---CCCCCCeEEEEEEE
Q 014903 287 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQR---PFMKGKLYIHFTVE 340 (416)
Q Consensus 287 ~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~---~~~~GdL~v~~~V~ 340 (416)
-+-|.+-+|-.|.|.+ | + +...+.|+|+-..-. .-..||++++|+++
T Consensus 62 Aigi~t~~GvEiLiHi--G--i---DTV~L~GegF~~~v~~Gd~Vk~Gd~Li~fDl~ 111 (156)
T COG2190 62 AIGIETDEGVEILIHI--G--I---DTVKLNGEGFESLVKEGDKVKAGDPLLEFDLD 111 (156)
T ss_pred EEEEEcCCCcEEEEEe--c--e---eeEEECCcceEEEeeCCCEEccCCEEEEECHH
Confidence 4567777887777754 4 3 456789999865322 22589999999744
No 172
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=28.64 E-value=56 Score=32.39 Aligned_cols=10 Identities=20% Similarity=0.876 Sum_probs=6.5
Q ss_pred eeeccccccC
Q 014903 144 NVICSKCSGK 153 (416)
Q Consensus 144 ~~~C~~C~G~ 153 (416)
...||.|.+.
T Consensus 184 ~~~CPvCGs~ 193 (305)
T TIGR01562 184 RTLCPACGSP 193 (305)
T ss_pred CCcCCCCCCh
Confidence 3468888654
No 173
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=28.07 E-value=43 Score=32.25 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=25.1
Q ss_pred cccccCHHHHhcC-cEEEEeccCCcEEEEEeCC
Q 014903 273 YEHTLSLTEALCG-FQFALTHLDGRQLLIKSNP 304 (416)
Q Consensus 273 ~~~~I~l~eAl~G-~~~~i~tldG~~l~i~~~~ 304 (416)
++.+|-|+||++| +..+|+|.|+..-.++|.|
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp 50 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITP 50 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcC
Confidence 3468999999999 5899999999755555544
No 174
>PF14353 CpXC: CpXC protein
Probab=28.07 E-value=72 Score=26.92 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.0
Q ss_pred eeeCCCCCCCce
Q 014903 187 QHPCNECKGTGE 198 (416)
Q Consensus 187 ~~~C~~C~G~G~ 198 (416)
..+||.|+....
T Consensus 38 ~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 38 SFTCPSCGHKFR 49 (128)
T ss_pred EEECCCCCCcee
Confidence 566777776654
No 175
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=27.97 E-value=96 Score=25.55 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=4.2
Q ss_pred eCCCCcccc
Q 014903 162 KCSGCQGTG 170 (416)
Q Consensus 162 ~C~~C~G~G 170 (416)
.|.-|.++|
T Consensus 37 aCeiC~~~G 45 (102)
T PF10080_consen 37 ACEICGPKG 45 (102)
T ss_pred eccccCCCc
Confidence 344444444
No 176
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=27.34 E-value=15 Score=29.89 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=6.5
Q ss_pred eeCCCCCCCce
Q 014903 188 HPCNECKGTGE 198 (416)
Q Consensus 188 ~~C~~C~G~G~ 198 (416)
..|..|.|.|.
T Consensus 33 k~c~rcgg~G~ 43 (95)
T PF03589_consen 33 KDCERCGGRGY 43 (95)
T ss_pred hhhhhhcCCCC
Confidence 35666666664
No 177
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=27.18 E-value=77 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=6.8
Q ss_pred eeCCCCCCCce
Q 014903 188 HPCNECKGTGE 198 (416)
Q Consensus 188 ~~C~~C~G~G~ 198 (416)
..||.|++...
T Consensus 87 ~~CP~Cgs~~~ 97 (115)
T TIGR00100 87 YRCPKCHGIML 97 (115)
T ss_pred ccCcCCcCCCc
Confidence 45777776653
No 178
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=26.44 E-value=2.1e+02 Score=22.31 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=17.3
Q ss_pred HhcCc-EEEEeccCCcEEEEEeCC
Q 014903 282 ALCGF-QFALTHLDGRQLLIKSNP 304 (416)
Q Consensus 282 Al~G~-~~~i~tldG~~l~i~~~~ 304 (416)
+++|. -++|.+.||.+..+++|.
T Consensus 8 ~~~G~n~~~V~~~dG~~~l~~iP~ 31 (78)
T cd05792 8 GSKGNNLHEVETPNGSRYLVSMPT 31 (78)
T ss_pred EcCCCcEEEEEcCCCCEEEEEech
Confidence 34554 467999999998888874
No 179
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=26.33 E-value=55 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.466 Sum_probs=13.0
Q ss_pred eeeccccccCCcccCceeeCCCCccccE
Q 014903 144 NVICSKCSGKGSKSGASMKCSGCQGTGM 171 (416)
Q Consensus 144 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~ 171 (416)
...|..|.-..........|+.|++...
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~ 97 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDV 97 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-E
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCc
Confidence 3456666555443333345666666653
No 180
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.84 E-value=1.1e+02 Score=26.03 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=29.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 014903 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD 47 (416)
Q Consensus 15 Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~ 47 (416)
-.||+|+..-+.+||-+-|-+|-.--.+.|.++
T Consensus 62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 469999999999999999999998888777765
No 181
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=25.34 E-value=73 Score=33.71 Aligned_cols=26 Identities=27% Similarity=0.643 Sum_probs=20.3
Q ss_pred EecCCcceeeeeeeCCCCCCCceEEc
Q 014903 176 RHLGPSMIQQMQHPCNECKGTGETIN 201 (416)
Q Consensus 176 ~~~gpg~~~~~~~~C~~C~G~G~~~~ 201 (416)
++.++.+......+|+.|.|+|.+..
T Consensus 384 ~R~~~sl~~~~~~~cp~c~G~g~v~~ 409 (487)
T COG1530 384 KRTRESLLEVLSERCPGCKGTGHVRS 409 (487)
T ss_pred EecCCCCceeeeeECCCceeeEEEec
Confidence 34466677778889999999998775
No 182
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=25.01 E-value=53 Score=19.70 Aligned_cols=8 Identities=38% Similarity=1.215 Sum_probs=4.1
Q ss_pred eeeCCCCC
Q 014903 187 QHPCNECK 194 (416)
Q Consensus 187 ~~~C~~C~ 194 (416)
..+||.|+
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 34566553
No 183
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=24.24 E-value=56 Score=21.54 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=4.5
Q ss_pred eeeCCCCCCC
Q 014903 187 QHPCNECKGT 196 (416)
Q Consensus 187 ~~~C~~C~G~ 196 (416)
...||.|+.+
T Consensus 5 ~v~CP~C~s~ 14 (36)
T PF03811_consen 5 DVHCPRCQST 14 (36)
T ss_pred eeeCCCCCCC
Confidence 3444444444
No 184
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.24 E-value=89 Score=34.45 Aligned_cols=58 Identities=24% Similarity=0.646 Sum_probs=37.1
Q ss_pred Cceeeeccee-----eeeccccccCCcccCceeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCC
Q 014903 134 GTSKKLSLSR-----NVICSKCSGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQ 208 (416)
Q Consensus 134 G~~~~~~~~r-----~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~ 208 (416)
| ..-+-++| ...|..|. ....|+.|.+.= ... +. .-...|..|+-.- . ...|+.
T Consensus 369 g-qvll~lnRrGyap~l~C~~Cg-------~~~~C~~C~~~L-~~h-~~-------~~~l~Ch~CG~~~--~--p~~Cp~ 427 (665)
T PRK14873 369 G-PVLVQVPRRGYVPSLACARCR-------TPARCRHCTGPL-GLP-SA-------GGTPRCRWCGRAA--P--DWRCPR 427 (665)
T ss_pred C-cEEEEecCCCCCCeeEhhhCc-------CeeECCCCCCce-eEe-cC-------CCeeECCCCcCCC--c--CccCCC
Confidence 5 55566665 36799884 346899998752 111 11 1246799998642 2 479999
Q ss_pred CCCC
Q 014903 209 CKGD 212 (416)
Q Consensus 209 C~G~ 212 (416)
|.+.
T Consensus 428 Cgs~ 431 (665)
T PRK14873 428 CGSD 431 (665)
T ss_pred CcCC
Confidence 9876
No 185
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=23.55 E-value=1.6e+02 Score=27.45 Aligned_cols=44 Identities=20% Similarity=0.300 Sum_probs=31.6
Q ss_pred ccccCHHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCC
Q 014903 274 EHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINE 318 (416)
Q Consensus 274 ~~~I~l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g 318 (416)
++.|++.+ ..=..+.+.|-+|+.+-|.+|.|.+++.|+++....
T Consensus 24 ~V~L~~dd-r~KrR~R~~td~G~evgl~LpRg~~L~dGDvL~~dd 67 (206)
T PRK13263 24 TLTLAFDA-RCKSRLAATLDTGREVAVVLPRGTVLRDGDVLVAED 67 (206)
T ss_pred EEEECHHH-hhcceEEEECCCCCEEEEECCCCCccCCCCEEEeCC
Confidence 34555533 333456778888999999999888889998887654
No 186
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=22.97 E-value=59 Score=22.00 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=5.2
Q ss_pred eeeccccccCCc
Q 014903 144 NVICSKCSGKGS 155 (416)
Q Consensus 144 ~~~C~~C~G~G~ 155 (416)
...||.|.|+..
T Consensus 3 h~pCP~CGG~Dr 14 (40)
T PF08273_consen 3 HGPCPICGGKDR 14 (40)
T ss_dssp EE--TTTT-TTT
T ss_pred CCCCCCCcCccc
Confidence 345677766554
No 187
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=22.95 E-value=20 Score=35.62 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=41.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHcCCcccccccccc
Q 014903 15 YEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQY 73 (416)
Q Consensus 15 Y~iLgv~~~As~~eIk~Ayrkla~k~HPDk~~~~-~~F~~i~~AYevLsd~~kR~~YD~~ 73 (416)
|..+.+.-.+....|++||..+.. .||+++++. ++|.++-.-|..+.+...+-.|+.+
T Consensus 28 ~~~~~~~~~~~~k~i~ka~~i~~~-~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 86 (335)
T KOG0724|consen 28 YEKLSLWTEEEFKKIEKALAILDD-DEPRRTPDSWDKFAEALPLEKRLEDKIEEYIGLVF 86 (335)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhc-cccccchhhhhHHHhcCccccccchhHHhhhhhHH
Confidence 444555566667899999999988 999998875 4566655555666666666555554
No 188
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=22.82 E-value=1.1e+02 Score=22.62 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q 014903 336 HFTVEFPDSLTPDQVKALEAI 356 (416)
Q Consensus 336 ~~~V~fP~~l~~~~~~~L~~~ 356 (416)
..+..||.+||++++..+-.+
T Consensus 17 ~~eL~Fp~~ls~~eRriih~l 37 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLL 37 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 567889999999998776554
No 189
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=22.64 E-value=56 Score=27.31 Aligned_cols=30 Identities=20% Similarity=0.516 Sum_probs=20.5
Q ss_pred eeeeccccccCCcccCceeeCCCCccccEE
Q 014903 143 RNVICSKCSGKGSKSGASMKCSGCQGTGMK 172 (416)
Q Consensus 143 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 172 (416)
-...|..|...-........|+.|++....
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGERLR 98 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCCCcE
Confidence 456799998655544344569999987754
No 190
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=22.27 E-value=29 Score=25.00 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=26.6
Q ss_pred CCCCCCCcCcccccCCCCCCCHHHHHHHHHHHH
Q 014903 5 APKKSNNTRYYEILGVSKNASAEDLKKAYKKAA 37 (416)
Q Consensus 5 ~~~~~~~~~~Y~iLgv~~~As~~eIk~Ayrkla 37 (416)
+|+...-.++=+.|||++.+-..-|++|-+|+.
T Consensus 20 ~PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 20 VPRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 455566667788899999998889999998874
No 191
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.12 E-value=34 Score=25.27 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=22.9
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 287 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 287 ~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
.+.++||.|+.|.|.|.|.+-+.-=....-.-+|+|-
T Consensus 2 ~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp 38 (70)
T KOG0005|consen 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP 38 (70)
T ss_pred eeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCc
Confidence 4678999999999988776433211111224577774
No 192
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=21.88 E-value=1.2e+02 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.491 Sum_probs=22.1
Q ss_pred eEEEEEEECCCC-CCHHHHHHHHHHCC
Q 014903 333 LYIHFTVEFPDS-LTPDQVKALEAILP 358 (416)
Q Consensus 333 L~v~~~V~fP~~-l~~~~~~~L~~~lp 358 (416)
.+.-++|+.|.. |+++|+.-|+.+..
T Consensus 62 ~~~~iEvK~p~~~ls~~Q~~~~~~l~~ 88 (100)
T PF08774_consen 62 IFLFIEVKGPGDRLSPNQKEWIDKLRE 88 (100)
T ss_pred EEEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 578888999976 99999999988764
No 193
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.85 E-value=86 Score=26.23 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=19.3
Q ss_pred eeeccccccCCcccCceeeCCCCccccEE
Q 014903 144 NVICSKCSGKGSKSGASMKCSGCQGTGMK 172 (416)
Q Consensus 144 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 172 (416)
...|..|.-.-........|+.|++....
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 70 ECECEDCSEEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEEcccCCCEEecCCcCccCcCCcCCCcE
Confidence 46788897444433334679999988743
No 194
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=21.74 E-value=53 Score=24.86 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=9.3
Q ss_pred eeCCCCccccEEEE
Q 014903 161 MKCSGCQGTGMKVS 174 (416)
Q Consensus 161 ~~C~~C~G~G~~~~ 174 (416)
-+|..|+.+-....
T Consensus 5 FTC~~C~~Rs~~~~ 18 (66)
T PF05180_consen 5 FTCNKCGTRSAKMF 18 (66)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEcCCCCCccceee
Confidence 47888877765443
No 195
>PF02963 EcoRI: Restriction endonuclease EcoRI; InterPro: IPR004221 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents restriction endonucleases EcoRI, which requires magnesium as a cofactor. EcoRI recognises the DNA sequence GAATTC and cleaves after G-1 [].; GO: 0000287 magnesium ion binding, 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1ERI_A 1CL8_A 1QRH_A 1QPS_A 1CKQ_A 1QC9_B 1QRI_A 2OXV_A.
Probab=21.52 E-value=47 Score=30.88 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=23.0
Q ss_pred EEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccCCC
Q 014903 287 QFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQ 325 (416)
Q Consensus 287 ~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~ 325 (416)
++.|+-+|||.+.+....|. +.-=+.+.-.+.|||+..
T Consensus 162 ~~~v~rpdgrvv~l~ynsg~-lnrldrltaanygmpint 199 (257)
T PF02963_consen 162 TISVTRPDGRVVTLEYNSGM-LNRLDRLTAANYGMPINT 199 (257)
T ss_dssp -EEEEETTSEEEEE-TT-TT-T--GGGTGGGGTT--SSS
T ss_pred ceeeeCCCCcEEEEEeccch-hhHHHHHhhhhcCCccch
Confidence 57899999998888766663 333345556799999864
No 196
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=21.44 E-value=2.9e+02 Score=23.66 Aligned_cols=50 Identities=18% Similarity=0.393 Sum_probs=27.5
Q ss_pred eeeCCCCccccEEEEEEecCCcceeeeeeeCCCCCCCceEEcCCCCCCCCCC
Q 014903 160 SMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKG 211 (416)
Q Consensus 160 ~~~C~~C~G~G~~~~~~~~gpg~~~~~~~~C~~C~G~G~~~~~~~~C~~C~G 211 (416)
...|+.|+-..++......| -+...-..|+.|.-+=........|+.|..
T Consensus 60 ~~~Cp~C~~~~~~~k~~~~~--~~f~~~~~~Pkc~~~~~~~~~~~~cp~c~~ 109 (140)
T COG0551 60 GVKCPKCGKGLLVLKKGRFG--KNFLGCSNYPKCRFTEKPKPKEKKCPKCGS 109 (140)
T ss_pred ceeCCCCCCCceEEEeccCC--ceEEeecCCCcCceeecCCcccccCCcCCC
Confidence 35677777533333322222 123345678888765544444466999987
No 197
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=21.34 E-value=1.1e+02 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=15.0
Q ss_pred eeCCCCccccEEEEEEecCC--cceeeeeeeCCCCCC
Q 014903 161 MKCSGCQGTGMKVSIRHLGP--SMIQQMQHPCNECKG 195 (416)
Q Consensus 161 ~~C~~C~G~G~~~~~~~~gp--g~~~~~~~~C~~C~G 195 (416)
.+|+-| |...+......+. ++. ....|..|+.
T Consensus 4 kPCPFC-G~~~~~~~~~~~~~~~~~--~~V~C~~Cga 37 (61)
T PF14354_consen 4 KPCPFC-GSADVLIRQDEGFDYGMY--YYVECTDCGA 37 (61)
T ss_pred cCCCCC-CCcceEeecccCCCCCCE--EEEEcCCCCC
Confidence 357777 5544433332222 111 3455777754
No 198
>PRK05978 hypothetical protein; Provisional
Probab=21.09 E-value=53 Score=28.95 Aligned_cols=8 Identities=38% Similarity=1.066 Sum_probs=4.5
Q ss_pred CCCCCCCC
Q 014903 203 KDRCPQCK 210 (416)
Q Consensus 203 ~~~C~~C~ 210 (416)
.+.|+.|.
T Consensus 52 ~~~C~~CG 59 (148)
T PRK05978 52 VDHCAACG 59 (148)
T ss_pred CCCccccC
Confidence 35666664
No 199
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=20.81 E-value=4.6e+02 Score=21.19 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=47.4
Q ss_pred cCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccCCCCCCCCCCeEEEEEEECCCCCCHHHHHHHHHHCC
Q 014903 284 CGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 358 (416)
Q Consensus 284 ~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~~~~~~~~GdL~v~~~V~fP~~l~~~~~~~L~~~lp 358 (416)
-|..+.+.+.||..+.|.+++..-...+..+-|-|+=.+ ...+-+..-+.|..+++.+....|-++..
T Consensus 28 ~~~~~~~~~~Dg~~v~v~l~~~~~~~~~~~vEViG~V~~-------~~~I~~~~~~~~g~~~D~~~yn~lv~l~~ 95 (101)
T cd04479 28 DGDSLTLISSDGVNVTVELNRPLDLPISGYVEVIGKVSP-------DLTIRVLSYIDFGDDFDMDLYNELVKLSH 95 (101)
T ss_pred cCCeEEEEcCCCCEEEEEeCCCCCcccCCEEEEEEEECC-------CCeEEEEEEEECCCccCHHHHHHHHHHHh
Confidence 344677888898778887776433566777777775433 24456667788999999888777777764
No 200
>PRK14051 negative regulator GrlR; Provisional
Probab=20.69 E-value=3e+02 Score=22.89 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=38.3
Q ss_pred ccEEEEEEEecCCCccccccccccccccC--HHHHhcCcEEEEeccCCcEEEEEeCCCccccCCcEEEeCCCCccC
Q 014903 250 GDIVFVLQQKEHPKFKRKGEDLFYEHTLS--LTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPL 323 (416)
Q Consensus 250 GDliv~i~~~~h~~f~R~G~DL~~~~~I~--l~eAl~G~~~~i~tldG~~l~i~~~~g~vi~~g~~~~i~g~GmP~ 323 (416)
-|+++.++-..|+.-.--+-+--+.+.|+ +.+.=.|+++.-.--+...|.|.+-. +.=..+.|++-|||.
T Consensus 48 ~~iilhvhR~n~ei~SVf~~eqdy~L~i~kk~~sn~~~~~l~~HV~~Nekl~vdv~a----kFI~~LvI~~~~~~~ 119 (123)
T PRK14051 48 EDIILHVHRYNYEIPSVLNIEQDYQLVIPKKVLSNDNNLTLHCHVRGNEKLFVDVYA----KFIEPLVIKNTGMPQ 119 (123)
T ss_pred ceeEEEEEecccccccccCccccEEEecchhheeCCCCeEEEEEEcCCcEEEEEEee----eeeeeeEEccCCCcc
Confidence 46777777666655444333223334444 33333344444333456667776543 223568899999995
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=20.61 E-value=4.3e+02 Score=30.37 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHCC
Q 014903 344 SLTPDQVKALEAILP 358 (416)
Q Consensus 344 ~l~~~~~~~L~~~lp 358 (416)
.+++.+...|-+++.
T Consensus 568 kms~~~Q~aLlEaME 582 (915)
T PTZ00111 568 KCHNESRLSLYEVME 582 (915)
T ss_pred hCCHHHHHHHHHHHh
Confidence 367776666666663
No 202
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=20.61 E-value=3.3e+02 Score=21.10 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=23.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhC
Q 014903 13 RYYEILGVSKNASAEDLKKAYKKAAIKNH 41 (416)
Q Consensus 13 ~~Y~iLgv~~~As~~eIk~Ayrkla~k~H 41 (416)
+.-++.|++|-|+..||+.|-++..+|..
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 34567799999999999999877776653
No 203
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=20.55 E-value=98 Score=23.03 Aligned_cols=12 Identities=42% Similarity=1.088 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCc
Q 014903 202 DKDRCPQCKGDK 213 (416)
Q Consensus 202 ~~~~C~~C~G~g 213 (416)
..+.|+.|.+.-
T Consensus 14 ~~~~CP~Cgs~~ 25 (61)
T PRK08351 14 TEDRCPVCGSRD 25 (61)
T ss_pred CCCcCCCCcCCc
Confidence 445677776654
No 204
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=20.40 E-value=58 Score=29.31 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHc
Q 014903 49 EKFKELAQAYEVL 61 (416)
Q Consensus 49 ~~F~~i~~AYevL 61 (416)
.++|-+--+|-+|
T Consensus 53 S~Wq~~Yl~yL~i 65 (200)
T PF12387_consen 53 SKWQCFYLLYLII 65 (200)
T ss_pred hhhHHHHHHHHHH
Confidence 5677777777665
Done!