Query 014905
Match_columns 416
No_of_seqs 563 out of 1606
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:13:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 100.0 1.6E-29 5.6E-34 239.5 31.1 314 48-392 37-388 (438)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.8E-30 1.6E-34 244.0 25.2 323 50-401 41-398 (451)
3 2gfp_A EMRD, multidrug resista 100.0 4.8E-29 1.7E-33 231.4 10.4 319 48-401 11-341 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 8.3E-26 2.8E-30 217.3 25.5 334 48-402 24-438 (491)
5 4gc0_A D-xylose-proton symport 99.9 4.7E-25 1.6E-29 212.0 19.5 308 71-401 54-421 (491)
6 2cfq_A Lactose permease; trans 99.9 3E-24 1E-28 201.9 10.0 321 48-399 18-362 (417)
7 2xut_A Proton/peptide symporte 99.9 5.1E-23 1.8E-27 199.4 14.4 161 47-216 22-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 2.4E-11 8.3E-16 114.8 21.6 159 48-218 263-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 2.5E-10 8.7E-15 107.4 21.9 150 51-213 272-427 (438)
10 2cfq_A Lactose permease; trans 99.1 7.6E-10 2.6E-14 103.6 15.2 143 71-223 258-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 2.8E-09 9.6E-14 101.9 16.0 159 52-223 298-476 (491)
12 4gc0_A D-xylose-proton symport 98.9 3.2E-08 1.1E-12 94.4 17.6 155 65-226 305-470 (491)
13 2gfp_A EMRD, multidrug resista 98.7 5.4E-08 1.8E-12 89.4 10.6 141 51-205 213-363 (375)
14 2xut_A Proton/peptide symporte 98.4 6.8E-07 2.3E-11 86.0 8.0 137 246-399 12-161 (524)
15 2g9p_A Antimicrobial peptide l 63.6 4.1 0.00014 19.3 1.5 14 91-104 2-15 (26)
16 2dw3_A Intrinsic membrane prot 24.6 63 0.0022 21.0 2.8 30 196-225 31-60 (77)
17 2nrg_A Intrinsic membrane prot 20.8 1E+02 0.0035 20.2 3.2 31 196-226 32-62 (82)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=1.6e-29 Score=239.48 Aligned_cols=314 Identities=14% Similarity=0.169 Sum_probs=232.7
Q ss_pred HHHHHHHhHHHHHHHHH-HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-h---ccch
Q 014905 48 LMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-T---KHSS 122 (416)
Q Consensus 48 ~~~~~~~~~~~~l~~l~-~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~---~~~~ 122 (416)
..........|.+ |.+ +++|.|+.++|++.+.+.++..+++++.|+++||+|||++++++.+..+++.+ . ..++
T Consensus 37 ~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~ 115 (438)
T 3o7q_A 37 LWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115 (438)
T ss_dssp HHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 4445556777777 556 89999999999999999999999999999999999999999999999998888 7 7889
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-hhhccC--
Q 014905 123 EYKILMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLV-DTLALG-- 196 (416)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-~~~~~~-- 196 (416)
+++.++++|++.|++.+...+...+ +++|. ++|++..++. +.+..+|. .++|.+++.+. +.. ..
T Consensus 116 ~~~~l~~~~~l~G~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~----~~~~~~g~----~~g~~~~~~l~~~~~-~~~~ 185 (438)
T 3o7q_A 116 NYTLFLVGLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLNLA----QTFNSFGA----IIAVVFGQSLILSNV-PHQS 185 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSCSTTHHHHHHHH----HHHHHHHH----HHHHHHTTHHHHTSS-CCCC
T ss_pred cHHHHHHHHHHHHhhHHHhhhhHHH-HHHHHcCchhHHHHHHHH----HHHHHHHH----HHHHHHHHHHHhccc-cccc
Confidence 9999999999999999999999988 88877 5566654444 34444444 56666666666 332 12
Q ss_pred ----------------------chhHHHHHHHHHHHHHHHHHHh-cccCCCCccchhhHHHhhhHHHhhhcchhHHHHHH
Q 014905 197 ----------------------PVAPFDAAACFLAFGMVIILAS-WTENYGDPEKKNLLAQFKGAALAIASDERIALLGA 253 (416)
Q Consensus 197 ----------------------w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (416)
||++|++.+...++..+..... .||+++++++++.+++.+++.++++|+|+++...+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (438)
T 3o7q_A 186 QDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVL 265 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHH
T ss_pred ccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHH
Confidence 9999988777666665554433 45544433222223445567888999999888876
Q ss_pred HHHHHHHHHHHHHHhhhccc-ccCCCCCc---hHHHHHHHHHHHHHhhHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Q 014905 254 IQSLFEGSMYTFVFLWTPAL-SPNDEEIP---HGFIFATFMLASMLGSSFASRLLAHSSLRVESYMQIVFIISSASLLIP 329 (416)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~ 329 (416)
...+.......... +.|.| .++..+.+ .+...+...++.+++.++.+++.|| .++|+.+.....+..+.....
T Consensus 266 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r--~~~~~~~~~~~~~~~~~~~~~ 342 (438)
T 3o7q_A 266 AQFCYVGAQTACWS-YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR--FAPHKVLAAYALIAMALCLIS 342 (438)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHH
Confidence 66666655555444 88888 77665554 6788888899999999999999999 777777766665555444333
Q ss_pred HHhhccCCCCCCCCCCcccchhHHHHHHHHHHHhhhcchhHHHHHHhccCCccccceeeeeee
Q 014905 330 ILTNFLETPPDVRGGGISLSGSLQLIGFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFR 392 (416)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~~~ 392 (416)
.... + ........+.+++.+...|...++..|.+|++ ++++.++..
T Consensus 343 ~~~~---------------~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 388 (438)
T 3o7q_A 343 AFAG---------------G-HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV 388 (438)
T ss_dssp HHCC---------------H-HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH
T ss_pred HHcC---------------C-cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH
Confidence 3222 2 23445567778888889999999999999977 787777655
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=4.8e-30 Score=244.05 Aligned_cols=323 Identities=10% Similarity=0.014 Sum_probs=240.1
Q ss_pred HHHHHhHHHHHHHHH-HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hcc----chh
Q 014905 50 MAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKH----SSE 123 (416)
Q Consensus 50 ~~~~~~~~~~l~~l~-~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~----~~~ 123 (416)
........+.+ |.+ +++ .|+.++|++.+++.++..++++++|+++||+|||++++++.+..+++.+ ..+ +++
T Consensus 41 ~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 118 (451)
T 1pw4_A 41 YLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118 (451)
T ss_dssp HHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS
T ss_pred HHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 33444556676 666 788 9999999999999999999999999999999999999999999999888 777 889
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccC-chh
Q 014905 124 YKILMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALG-PVA 199 (416)
Q Consensus 124 ~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~-w~~ 199 (416)
++.++++|++.|++.+...+...+ ++.|. ++|++..++ ...+..+|. .++|.+++.+.+.. + ||+
T Consensus 119 ~~~l~~~~~l~G~~~~~~~~~~~~-~i~~~~~~~~r~~~~~~----~~~~~~~g~----~~g~~~~~~l~~~~--g~w~~ 187 (451)
T 1pw4_A 119 IAVMFVLLFLCGWFQGMGWPPCGR-TMVHWWSQKERGGIVSV----WNCAHNVGG----GIPPLLFLLGMAWF--NDWHA 187 (451)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHH-HHHTTCTTTHHHHHHHH----HHHHHHHHH----TSHHHHHHHHHHHT--CCSTT
T ss_pred HHHHHHHHHHHHHHhhhccchHHH-HHHHHCCchhhhHHHHH----HHHHHHHHH----HHHHHHHHHHHHHh--ccHHH
Confidence 999999999999999999998888 88877 556666433 344444445 66677777766665 8 999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCccc---hh---h-------H---HHh--hhHHHhhhcchhHHHHHHHHHHHHHH
Q 014905 200 PFDAAACFLAFGMVIILASWTENYGDPEK---KN---L-------L---AQF--KGAALAIASDERIALLGAIQSLFEGS 261 (416)
Q Consensus 200 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~-------~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (416)
+|++.+++.++..++.....||++++.+. ++ . + +.. +...++.+|+|.++...+...+....
T Consensus 188 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (451)
T 1pw4_A 188 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 267 (451)
T ss_dssp CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999988887777666566665543210 00 0 0 000 01146677888888887777766666
Q ss_pred HHHHHHhhhcccccCCCCCc---hHHHHHHHHHHHHHhhHHHHHHhhcccc--cchhHHHHHHHHHH-HHHHHHHHhhcc
Q 014905 262 MYTFVFLWTPALSPNDEEIP---HGFIFATFMLASMLGSSFASRLLAHSSL--RVESYMQIVFIISS-ASLLIPILTNFL 335 (416)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 335 (416)
.+.... +.|.|.++..+.+ .+...+...++.+++.++.+++.|| . +.|+.+.....+.. +.+........
T Consensus 268 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 343 (451)
T 1pw4_A 268 RYGILD-WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK--VFRGNRGATGVFFMTLVTIATIVYWMNPA- 343 (451)
T ss_dssp HHHHHH-HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTTCHHHHHHHHHHHHHHHHHHTTSCCT-
T ss_pred HHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCchhHHHHHHHHHHHHHHHHHHhcc-
Confidence 666454 8999998866664 6788888899999999999999999 6 66666655554444 22222211110
Q ss_pred CCCCCCCCCCcccchhHHHHHHHHHHHhhhcchhHHHHHHhccCCccccceeeeeeecccce-eeee
Q 014905 336 ETPPDVRGGGISLSGSLQLIGFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNV-FVCI 401 (416)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~-~~~~ 401 (416)
. +.+.......+.+++.+...+....+..|.+|+++|++++|+.+...++ ...+
T Consensus 344 --~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 344 --G----------NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp --T----------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --c----------CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence 0 3455666777778888888888899999999999999999999887777 5444
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=4.8e-29 Score=231.40 Aligned_cols=319 Identities=14% Similarity=0.081 Sum_probs=236.5
Q ss_pred HHHHHHHhHHHHHHHHH-HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hccchhHH
Q 014905 48 LMMAGDWLQGPYVYYLY-STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKHSSEYK 125 (416)
Q Consensus 48 ~~~~~~~~~~~~l~~l~-~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~~~~~~ 125 (416)
+.........|.+ |.+ +++|.|+++.|++.+...++..+++++.|+++||+|||+++..+.....++.+ ..++++++
T Consensus 11 ~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 89 (375)
T 2gfp_A 11 VGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89 (375)
T ss_dssp HHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH
Confidence 5566667778887 556 89999999999999999999999999999999999999999999999998888 78889999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCchhHHH
Q 014905 126 ILMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALGPVAPFD 202 (416)
Q Consensus 126 ~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~w~~~f~ 202 (416)
.+++.|++.|++.+...+...+ ++.|. ++|++..+.. ..+..+|. .++|.+++.+.+.. +||..|.
T Consensus 90 ~l~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~g~----~~~~~~~~~l~~~~--~~~~~~~ 158 (375)
T 2gfp_A 90 VLIAASAMQGMGTGVGGVMART-LPRDLYERTQLRHANSLL----NMGILVSP----LLAPLIGGLLDTMW--NWRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCCSHHHHH----HHHHHHHH----HHHHHHHHHSSCHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHH-HHHHHCCHHHHHHHHHHH----HHHHHHHH----HhhHHHHHHHHHhc--cHHHHHH
Confidence 9999999999999999998888 88876 6677774444 33444444 66677777776665 8999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCccchhhHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCc-
Q 014905 203 AAACFLAFGMVIILASWTENYGDPEKKNLLAQFKGAALAIASDERIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP- 281 (416)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 281 (416)
+.++..++..+......||++++++++ ++.+++.++.+|+|+++...+...+.......... +.|.|.++..+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 234 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPVDAPR---TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEA-CSGVLMGAVLGLSS 234 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTTTCCC---CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCCCccc---ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCH
Confidence 888887776664444566665443222 22344567788888888776666666666666444 8899988754443
Q ss_pred --hHHHHHHHHHHHHHhhHHHHHHhhcccccchhHHHHHHHH-HHHHHH--HHHHh-hccCCCCCCCCCCcccchhHHHH
Q 014905 282 --HGFIFATFMLASMLGSSFASRLLAHSSLRVESYMQIVFII-SSASLL--IPILT-NFLETPPDVRGGGISLSGSLQLI 355 (416)
Q Consensus 282 --~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
.+.......++.+++.++.+++.|| .+. ....+... ...... ..... .. +.+....
T Consensus 235 ~~~g~~~~~~~~~~~~~~~~~~~l~~r--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 296 (375)
T 2gfp_A 235 MTVSILFILPIPAAFFGAWFAGRPNKR--FST--LMWQSVICCLLAGLLMWIPDWFGVM--------------NVWTLLV 296 (375)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTTTTH--HHH--HHHHHHHHHHHTSSSSSHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHHhhhccc--------------cHHHHHH
Confidence 6777888899999999999999999 333 22222222 111111 11111 11 3344556
Q ss_pred HHHHHHHhhhcchhHHHHHHhccCCccccceeeeeeecccceeeee
Q 014905 356 GFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNVFVCI 401 (416)
Q Consensus 356 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~~~~~ 401 (416)
...+.+++.+...+...++.+|..| |+|+++.|+.+...++...+
T Consensus 297 ~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~ 341 (375)
T 2gfp_A 297 PAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV 341 (375)
T ss_dssp HHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH
Confidence 6777888888899999999999999 89999999998777765544
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=8.3e-26 Score=217.27 Aligned_cols=334 Identities=15% Similarity=0.105 Sum_probs=214.3
Q ss_pred HHHHHHHhHHHHHHHHH--HH-----cCCChhhHHHHHHHHHHHHHHHHhhHhhhhhh-hCchHHHHHHHHHHHhhhh-h
Q 014905 48 LMMAGDWLQGPYVYYLY--ST-----YGFGKGEIGQLFIAGFGSSMLFGTLVGSLADK-QGRKRACVTYCITYMLSCV-T 118 (416)
Q Consensus 48 ~~~~~~~~~~~~l~~l~--~~-----~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~l-~ 118 (416)
....+.....+++ +.| ++ +|.|+.+.|++.+.+.++..+++++.|+++|| +|||+++..+.+...++.+ .
T Consensus 24 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 24 WERFSYYGMRAIL-LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 3444444455555 444 45 99999999999999999999999999999999 8999999999999999888 8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cc--cCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 014905 119 KHSSEYKILMLGRIFGGIATSLLFSAFESWLVAEH---NK--RGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTL 193 (416)
Q Consensus 119 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~--r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 193 (416)
.+++|++.++++|++.|++.+...+...+ +++|. ++ |+.. . +.++.+..+|. .++|.+++.+.+..
T Consensus 103 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~~~r~~~---~-~~~~~~~~~g~----~~~~~~~~~l~~~~ 173 (491)
T 4aps_A 103 ALPFGASALFGSIILIIIGTGFLKPNVST-LVGTLYDEHDRRRDAG---F-SIFVFGINLGA----FIAPLIVGAAQEAA 173 (491)
T ss_dssp HSCCSTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHSSSCTTHHHHH---H-HHHHHHHHHHH----HHHHHHHHHHHHHS
T ss_pred HHhhhHHHHHHHHHHHHHHHHhccchHHH-HHHHHcCcccccceee---e-hHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 88999999999999999999999998888 88876 33 3333 2 33344444555 77888888888776
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHhcccCCC----CccchhhHHHhhhHHH-----------------------------
Q 014905 194 ALGPVAPFDAAACFLAFGMVIILASWTENYG----DPEKKNLLAQFKGAAL----------------------------- 240 (416)
Q Consensus 194 ~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~----------------------------- 240 (416)
+||++|++.++..++..+......++..+ ++++++.+++.++..+
T Consensus 174 --g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 174 --GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 99999999877776666555433222111 1111000111111000
Q ss_pred --------------------------hhhcchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC---CchHHHHHHHHH
Q 014905 241 --------------------------AIASDERIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFML 291 (416)
Q Consensus 241 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~ 291 (416)
+..+....+.......+....... ...+.|.|.++..+ .+.+.......+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQ-GSVVLATFAAERVDSSWFPVSWFQSLNPL 330 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGG-GGTHHHHHHHHSCCCSSSCSGGGTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHhccCccCHHHHhccchH
Confidence 000111222222222222222222 22244555554322 346777777788
Q ss_pred HHHHhhHHHHHHhhcccccchhHHH-----HHHHHHHHHHHHHHHhhccCCCCCCCCCCcccchhHHHHHHHHHHHhhhc
Q 014905 292 ASMLGSSFASRLLAHSSLRVESYMQ-----IVFIISSASLLIPILTNFLETPPDVRGGGISLSGSLQLIGFSTFEACVGI 366 (416)
Q Consensus 292 ~~~~~~~~~~~l~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 366 (416)
+.+++.++.+++.|| .++|+... .+..+..+.+...........+ + .+. +.+.......+.+++.+.
T Consensus 331 ~~~~~~~~~~~l~~r--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~---~~~~~~~~~~l~g~~~~~ 402 (491)
T 4aps_A 331 FIMLYTPFFAWLWTA--WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT-S--GKV---SPLWLVGSWALVILGEML 402 (491)
T ss_dssp HHHHHHHHHHHHHHH--TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC-C--TTC---CTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH--HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-C--CCc---cHHHHHHHHHHHHHHHHH
Confidence 888889999999999 55443222 3333333333322222110000 0 000 345566777888888888
Q ss_pred chhHHHHHHhccCCccccceeeeeeecccceeeeee
Q 014905 367 FWPSIMKMRSQYIPEEARSTIMNFFRIPLNVFVCIV 402 (416)
Q Consensus 367 ~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~~~~~~ 402 (416)
..+...++..|.+|++.|++++|+.+...++...++
T Consensus 403 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 403 ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999887777655443
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.93 E-value=4.7e-25 Score=211.99 Aligned_cols=308 Identities=12% Similarity=0.097 Sum_probs=192.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hc------------------cchhHHHHHHHH
Q 014905 71 KGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TK------------------HSSEYKILMLGR 131 (416)
Q Consensus 71 ~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~------------------~~~~~~~l~~~r 131 (416)
+.+.|++.+++.++.+++++++|+++||+|||++++++.+++.++.+ ++ .++|++.++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 35679999999999999999999999999999999999988888776 55 478999999999
Q ss_pred HHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh------ccCchhHHH
Q 014905 132 IFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTL------ALGPVAPFD 202 (416)
Q Consensus 132 ~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~------~~~w~~~f~ 202 (416)
+++|++.|...+.... +++|. ++|++..+.. ..+...|. +.++.++....... .++||..+.
T Consensus 134 ~l~G~g~G~~~~~~~~-~i~E~~p~~~rg~~~~~~----~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPM-YIAELAPAHIRGKLVSFN----QFAIIFGQ----LLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHH-HHHTTSCGGGHHHHHHHH----HHHHHHHH----HHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHhhCCHHhhhhhHHhh----hhhhhhhh----hhhhhcchhhccccccccccchhhHHHhh
Confidence 9999999999999999 99988 6677664444 33344444 33333333332211 125777777
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCc----cchhhH----------------HHh--------hh-HHHhhhcchhHHHHHH
Q 014905 203 AAACFLAFGMVIILASWTENYGDP----EKKNLL----------------AQF--------KG-AALAIASDERIALLGA 253 (416)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----------------~~~--------~~-~~~~~~~~~~~~~~~~ 253 (416)
+..+..++..+... ..||+|+.. ++++.+ ++. +. ......+.++......
T Consensus 205 ~~~~~~~~~~~~~~-~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (491)
T 4gc0_A 205 SECIPALLFLMLLY-TVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVM 283 (491)
T ss_dssp TTHHHHHHHHHHGG-GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHH
T ss_pred hhhhhhhhhhhhhh-cCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHH
Confidence 66666555554443 677776410 000000 000 00 0111222234433333
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCc--hHHHHHHHHHHHHHhhHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHH
Q 014905 254 IQSLFEGSMYTFVFLWTPALSPNDEEIP--HGFIFATFMLASMLGSSFASRLLAHSSLRVESYMQIVFIISSASLLIPIL 331 (416)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (416)
...+.+.........|.|.+.++....+ .........+..+++.++.+++.|| .++|+.+........+.+.....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr--~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK--FGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh--hcCcchhccchHHHHHHHHHHHH
Confidence 3333333333333436666555432222 3344455577888889999999999 78777777666665554444333
Q ss_pred hhccCCCCCCCCCCcccchhHHHHHHHHHHHhhhc-chhHHHHHHhccCCccccceeeeeeecccceeeee
Q 014905 332 TNFLETPPDVRGGGISLSGSLQLIGFSTFEACVGI-FWPSIMKMRSQYIPEEARSTIMNFFRIPLNVFVCI 401 (416)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~-~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~~~~~ 401 (416)
..... . +.+.......++..+.+. ..|..+.+.+|.+|++.|+++.|+.+...++...+
T Consensus 362 ~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i 421 (491)
T 4gc0_A 362 AFYTQ-------A----PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF 421 (491)
T ss_dssp HHHTT-------C----CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc-------c----chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence 22210 0 223333444444444443 45778899999999999999999987766655433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=3e-24 Score=201.88 Aligned_cols=321 Identities=14% Similarity=0.067 Sum_probs=190.3
Q ss_pred HHHHHHHhHHHHHHHHH--HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh----hccc
Q 014905 48 LMMAGDWLQGPYVYYLY--STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV----TKHS 121 (416)
Q Consensus 48 ~~~~~~~~~~~~l~~l~--~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l----~~~~ 121 (416)
....+.....|++ |.| +++|.|+.++|++.+...++..++++++|+++||+|||++++++.....+... ..+.
T Consensus 18 ~~~~~~~~~~~~~-~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2cfq_A 18 FYFFIMGAYFPFF-PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG 96 (417)
T ss_dssp HHHHHHHHHTTTH-HHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667888 666 46899999999999999999999999999999999999999988776554221 1222
Q ss_pred hhH-HHHHHHHHHHHhhhhhhh----hhhhhhhhhhh-cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Q 014905 122 SEY-KILMLGRIFGGIATSLLF----SAFESWLVAEH-NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLAL 195 (416)
Q Consensus 122 ~~~-~~l~~~r~l~G~~~~~~~----~~~~~~~i~e~-~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 195 (416)
+.. ..+...+.+.|++.+... +.... +..|. ++++...+... .+..+|. .++|.+++.+.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~----~~~~~g~----~~~~~l~~~l~~~--- 164 (417)
T 2cfq_A 97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEA-FIEKVSRRSNFEFGRAR----MFGCVGW----ALGASIVGIMFTI--- 164 (417)
T ss_dssp HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHH-HHHHHHHHHTCCHHHHS----SSTTTHH----HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHhhhhcccchHHHH----HHHHHHH----HHHHHHHHHHHHh---
Confidence 211 113344555555444333 32333 33333 34454422221 1122333 6677777777664
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCCCCc--cc--h-hhHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 014905 196 GPVAPFDAAACFLAFGMVIILASWTENYGDP--EK--K-NLLAQFKGAALAIASDERIALLGAIQSLFEGSMYTFVFLWT 270 (416)
Q Consensus 196 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (416)
+|+..|++.++..++..+......||++++. ++ + +.++...++.++++|+|+++.............+.+.. +.
T Consensus 165 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 243 (417)
T 2cfq_A 165 NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQ-QF 243 (417)
T ss_dssp CSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-HH
Confidence 8999998776664444333332233332111 00 0 00111123456678888877665443333333333222 55
Q ss_pred cccccCCCCC------chHHHHHHHHHHHHHhhHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 014905 271 PALSPNDEEI------PHGFIFATFMLASMLGSSFASRLLAHSSLRVESYMQIVFIISSASLLIPILTNFLETPPDVRGG 344 (416)
Q Consensus 271 ~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (416)
|.|.++..+. ..+...+...++.+++.++.+++.|| .+.|+.+..+..+..+....... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr--~g~~~~l~~~~~~~~~~~~~~~~-~~---------- 310 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR--IGGKNALLLAGTIMSVRIIGSSF-AT---------- 310 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTT-CC----------
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHH-hc----------
Confidence 6555432221 14566666677888899999999999 77777666555444433322211 11
Q ss_pred CcccchhHHHHHHHHHHHhhhcchhHHHHHHhccCCccccceeeeee-ecccceee
Q 014905 345 GISLSGSLQLIGFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIPLNVFV 399 (416)
Q Consensus 345 ~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~~~ 399 (416)
+.+...+...+.++..+...+....+.+|.+|++.||+++++. +...++..
T Consensus 311 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~ 362 (417)
T 2cfq_A 311 ----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362 (417)
T ss_dssp ----SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH
Confidence 3344445555566666666667788999999999999998884 65555543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=5.1e-23 Score=199.43 Aligned_cols=161 Identities=12% Similarity=0.165 Sum_probs=129.4
Q ss_pred HHHHHHHHhHHHHHHHHH--HHcC------CChhhHHHHHHHHHHHHHHHHhhHhhhhhhh-CchHHHHHHHHHHHhhhh
Q 014905 47 SLMMAGDWLQGPYVYYLY--STYG------FGKGEIGQLFIAGFGSSMLFGTLVGSLADKQ-GRKRACVTYCITYMLSCV 117 (416)
Q Consensus 47 ~~~~~~~~~~~~~l~~l~--~~~~------~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~-Grr~~l~~~~~~~~~~~l 117 (416)
++...+.....+++ +.| +++| .|+.+.|++.+.+.++..+++++.|+++||+ |||+++.++.+...++.+
T Consensus 22 ~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 22 ACERFSFYGMRNIL-TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 35555555566676 444 6789 9999999999999999999999999999999 999999999998888888
Q ss_pred -hccch-hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 014905 118 -TKHSS-EYKILMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDT 192 (416)
Q Consensus 118 -~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 192 (416)
..+++ +++.+++.|++.|++.+...+...+ ++.|. ++|++..+.. +....+..+|. .++|.+++.+.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~-~~~~~~~~~g~----~~g~~~~~~l~~~ 174 (524)
T 2xut_A 101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS-FMGDQFDQSNKSLAQKAF-DMFYFTINFGS----FFASLSMPLLLKN 174 (524)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH-HHHHTCSTTTTTHHHHHH-HHHHHHHHHHH----HHHHHTSTHHHHT
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchhHHH-HHHHHcCccchHHHHHHH-HHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 77788 9999999999999999999998888 88876 5566554443 33444445555 7888888888876
Q ss_pred hccCchhHHHHHHHHHHHHHHHHH
Q 014905 193 LALGPVAPFDAAACFLAFGMVIIL 216 (416)
Q Consensus 193 ~~~~w~~~f~~~~~~~~~~~~~~~ 216 (416)
. +|+++|++.++..++..+...
T Consensus 175 ~--g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 175 F--GAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp S--CHHHHHHHHHHHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999998887766655544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=2.4e-11 Score=114.83 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=117.8
Q ss_pred HHHHHHHhHHHHHHHHH-HH-cCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhh--CchHHHHHHHHHHH-hhhh-hccc
Q 014905 48 LMMAGDWLQGPYVYYLY-ST-YGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQ--GRKRACVTYCITYM-LSCV-TKHS 121 (416)
Q Consensus 48 ~~~~~~~~~~~~l~~l~-~~-~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~--Grr~~l~~~~~~~~-~~~l-~~~~ 121 (416)
+..........+. |.| ++ +|.++.+.+++.+...++..++.++.|+++||+ |||+.+..+..... ++.+ ....
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 263 FVYLLRYGILDWS-PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HHHHHHHHHHHHH-HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh
Confidence 3344444555666 667 54 899999999999999999999999999999999 99999888766655 5555 4444
Q ss_pred --hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHhhhcc
Q 014905 122 --SEYKILMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFL-GNGLVAIISGLFGNLLVDTLAL 195 (416)
Q Consensus 122 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~~~~~~ 195 (416)
.+.+.+.+..++.|++.+...+...+ ++.|. ++|+...+.. +....+ |. .++|.+.+.+.+..
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~----~~~~~~~g~----~~~~~~~g~l~~~~-- 410 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFT----GLFGYLGGS----VAASAIVGYTVDFF-- 410 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHSS--
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHH-HHHHHhchhhhhhHHHHH----HHHHHHHHH----HHHHHHHHHHHHhc--
Confidence 36777888888899988887776667 77766 4466653333 332333 44 77778888888876
Q ss_pred CchhHHHHHHHHHHHHHHHHHHh
Q 014905 196 GPVAPFDAAACFLAFGMVIILAS 218 (416)
Q Consensus 196 ~w~~~f~~~~~~~~~~~~~~~~~ 218 (416)
||+..|++.+++.++..++....
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 411 GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888877777666543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.31 E-value=2.5e-10 Score=107.38 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=107.8
Q ss_pred HHHHhHHHHHHHH-H-HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hccchhHHHH
Q 014905 51 AGDWLQGPYVYYL-Y-STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKHSSEYKIL 127 (416)
Q Consensus 51 ~~~~~~~~~l~~l-~-~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~~~~~~~l 127 (416)
........++++. . +.+|.++.+.+...+...++..++.++.|+++||+|||+.+..+.+...++.+ ..+.++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGL 351 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 3344444566444 3 45599999999999999999999999999999999999999999888877777 6666666554
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhh--cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccC-chhHHHHH
Q 014905 128 MLGRIFGGIATSLLFSAFESWLVAEH--NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALG-PVAPFDAA 204 (416)
Q Consensus 128 ~~~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~-w~~~f~~~ 204 (416)
.. -++.|++.+...+...+ +..|. ++++...+. .. . ..++..++|.+.+.+.+.. | ++..|.+.
T Consensus 352 ~~-~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~---~-~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~ 418 (438)
T 3o7q_A 352 IA-LTLCSAFMSIQYPTIFS-LGIKNLGQDTKYGSSF-----IV---M-TIIGGGIVTPVMGFVSDAA--GNIPTAELIP 418 (438)
T ss_dssp HH-HHHHHHHHTTHHHHHHH-HHHSSCGGGHHHHHHH-----HH---H-TTHHHHHHHHHHHHHHHHH--TSSGGGGHHH
T ss_pred HH-HHHHHHHHHHHHHHHHH-HHHhhccccccchhhH-----HH---H-HHHHHHHHHHHHHHHHHHh--cchHHHHHHH
Confidence 44 37888888888887777 65655 333333111 11 1 2244488888888888887 7 99999876
Q ss_pred HHHHHHHHH
Q 014905 205 ACFLAFGMV 213 (416)
Q Consensus 205 ~~~~~~~~~ 213 (416)
++..++..+
T Consensus 419 ~~~~~~~~~ 427 (438)
T 3o7q_A 419 ALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.14 E-value=7.6e-10 Score=103.57 Aligned_cols=143 Identities=8% Similarity=-0.008 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hccchhHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 014905 71 KGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKHSSEYKILMLGRIFGGIATSLLFSAFESWL 149 (416)
Q Consensus 71 ~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 149 (416)
..+.|...+...+...++.++.|+++||+|||+.+..+....+++.+ ..+.++.+.+++..++.+++.+...+.... +
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 336 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK-Y 336 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH-H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 45568888888888899999999999999999999988877777766 666777778877777788776666665566 7
Q ss_pred hhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcccCC
Q 014905 150 VAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALGPVAPFDAAACFLAFGMVIILASWTENY 223 (416)
Q Consensus 150 i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 223 (416)
++|. +.|+...+. .++.+..+|. .++|.+++.+.+.. +++..|.+.+++.++..+......||++
T Consensus 337 ~~~~~p~~~~g~~~g~---~~~~~~~lg~----~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLV---CFCFFKQLAM----IFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHH---HHTTTHHHHH----HHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHH---HHHHHHhHHH----HHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 7766 344443211 1222333444 77788888777765 7888888888887777766654455544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.06 E-value=2.8e-09 Score=101.88 Aligned_cols=159 Identities=9% Similarity=-0.117 Sum_probs=103.9
Q ss_pred HHHhHHHHHHHHH--HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHH-----HHHHHHHhhhh-hccc--
Q 014905 52 GDWLQGPYVYYLY--STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACV-----TYCITYMLSCV-TKHS-- 121 (416)
Q Consensus 52 ~~~~~~~~l~~l~--~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~-----~~~~~~~~~~l-~~~~-- 121 (416)
........+ +.+ +..+.+..+.+.+.+...+...++.++.|++.||+|||+... .+....+++.+ ....
T Consensus 298 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (491)
T 4aps_A 298 IEEQGSVVL-ATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGA 376 (491)
T ss_dssp HHGGGGTHH-HHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHhhccHHH-HHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455 556 446777677888888889999999999999999999986654 56666666555 3332
Q ss_pred -------hhHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014905 122 -------SEYKILMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVD 191 (416)
Q Consensus 122 -------~~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~ 191 (416)
.+.+.+.+..++.|++.+...+...+ ++.|. ++|+...+..+.... +|. .+++.+.+...+
T Consensus 377 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~~~~~~----~g~----~i~~~~~~~~~~ 447 (491)
T 4aps_A 377 LYGTSGKVSPLWLVGSWALVILGEMLISPVGLS-VTTKLAPKAFNSQMMSMWFLSSS----VGS----ALNAQLVTLYNA 447 (491)
T ss_dssp HCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHH-HHHHHTTTTCSSSSTHHHHHHHH----HHH----HHHHHHGGGGGG
T ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHH-HHHHhCCHHHHHHHHHHHHHHHH----HHH----HHHHHHHHHHhc
Confidence 26677888889999999888887777 77765 667887555533333 344 444455554443
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHhcccCC
Q 014905 192 TLALGPVAPFDAAACFLAFGMVIILASWTENY 223 (416)
Q Consensus 192 ~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~ 223 (416)
. ++...|...+...++..+..+...++.+
T Consensus 448 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 448 K---SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp S---STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred c---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 6777888877777777666664544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=3.2e-08 Score=94.43 Aligned_cols=155 Identities=15% Similarity=0.030 Sum_probs=94.9
Q ss_pred HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hcc----chhHHHHHHHHHHHHhhhh
Q 014905 65 STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKH----SSEYKILMLGRIFGGIATS 139 (416)
Q Consensus 65 ~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~----~~~~~~l~~~r~l~G~~~~ 139 (416)
++.+.+..+.........+...++.++.+.+.||+|||+.++.+.....++.+ ... ..+.+..++.-++...+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 78888888887777788888999999999999999999999888666555443 211 1111222222222222222
Q ss_pred -hhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH--HHhhhccCchhHHHHHHHHHHHHHH
Q 014905 140 -LLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNL--LVDTLALGPVAPFDAAACFLAFGMV 213 (416)
Q Consensus 140 -~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~--~~~~~~~~w~~~f~~~~~~~~~~~~ 213 (416)
...+.... +.+|. +.|+...++......++..+++ .+.|.+... ..... ++..+|++.+++.++..+
T Consensus 385 ~~~~~~~~~-~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~----~~~p~l~~~~~~~~~~--~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 385 MSWGPVCWV-LLSEIFPNAIRGKALAIAVAAQWLANYFVS----WTFPMMDKNSWLVAHF--HNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp TTTTHHHHH-HHHHSSCTTTHHHHHHHHHHHHHHHHHHHH----THHHHHCHHHHHHHHH--TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-HHHHhCCHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHH
Confidence 22233345 66776 5567664444333333333322 444443221 22223 677788888888888888
Q ss_pred HHHHhcccCCCCc
Q 014905 214 IILASWTENYGDP 226 (416)
Q Consensus 214 ~~~~~~~~~~~~~ 226 (416)
..+++.||++.+.
T Consensus 458 ~~~~~~PETkg~t 470 (491)
T 4gc0_A 458 FMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHCCCCTTCC
T ss_pred HHHheecCCCCCC
Confidence 8888899987543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.72 E-value=5.4e-08 Score=89.44 Aligned_cols=141 Identities=12% Similarity=0.012 Sum_probs=94.2
Q ss_pred HHHHhHHHHHHHHH-H-HcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHH-HHhhhh-hcc----ch
Q 014905 51 AGDWLQGPYVYYLY-S-TYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCIT-YMLSCV-TKH----SS 122 (416)
Q Consensus 51 ~~~~~~~~~l~~l~-~-~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~l-~~~----~~ 122 (416)
........+. |.+ + ++|.|+.+.|.+.+...++..++.++.|++.||+|||. ..+... ...+.. ... .+
T Consensus 213 ~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2gfp_A 213 AGIAAFEACS-GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVM 289 (375)
T ss_dssp HHHHHHHHHC-SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccc
Confidence 3334444454 555 4 48999999999999999999999999999999999832 233222 222222 111 23
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCchhH
Q 014905 123 EYKILMLGRIFGGIATSLLFSAFESWLVAEH--NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALGPVAP 200 (416)
Q Consensus 123 ~~~~l~~~r~l~G~~~~~~~~~~~~~~i~e~--~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~w~~~ 200 (416)
+.+.+.+..++.|++.+...+...+ +..|. ++|++..+.. +....+|. .++|.+.+.+.+.. +++..
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~-~~~~~~p~~~g~~~g~~----~~~~~~g~----~~~~~~~g~l~~~~--~~~~~ 358 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATS-GAMEPFPFLAGTAGALV----GGLQNIGS----GVLASLSAMLPQTG--QGSLG 358 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHH-HHHTHHHHHHHHHHHHH----HHHHHHHH----HCCSTTCTHHHHHH--HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHH-HHHHhCCcccchHHHHH----HHHHHHHH----HHHHHHHHHHhcCC--cccHH
Confidence 6677778888999999988888777 77766 5666654443 33333444 67777777777665 67766
Q ss_pred HHHHH
Q 014905 201 FDAAA 205 (416)
Q Consensus 201 f~~~~ 205 (416)
+...+
T Consensus 359 ~~~~~ 363 (375)
T 2gfp_A 359 LLMTL 363 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.36 E-value=6.8e-07 Score=86.02 Aligned_cols=137 Identities=10% Similarity=0.032 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC------C---chHHHHHHHHHHHHHhhHHHHHHhhcccc-cchhHH
Q 014905 246 ERIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE------I---PHGFIFATFMLASMLGSSFASRLLAHSSL-RVESYM 315 (416)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~~~~~ 315 (416)
|.++.+.+...+.....+.... +.+.|.++..+ . ..+.+.+...++..++.++.|++.|| . ++|+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr--~~g~r~~~ 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRN-ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR--FFGKYNTI 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHH-HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT--SSCSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHH
Confidence 3344444444444555555444 66666655444 3 37889999999999999999999999 7 888887
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccchhHHHHHHHHHHHhhhcchhHHHHHHhccCCccccceeeee---ee
Q 014905 316 QIVFIISSASLLIPILTNFLETPPDVRGGGISLSGSLQLIGFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNF---FR 392 (416)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~---~~ 392 (416)
..+..+..+.......... +.+..++...+.|++.+...+...+++.|.+|+++|++..+. .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 154 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEH--------------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFY 154 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSS--------------CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHH
Confidence 7776666655544433321 346667777888999999999999999999999999876555 55
Q ss_pred cccceee
Q 014905 393 IPLNVFV 399 (416)
Q Consensus 393 ~~~~~~~ 399 (416)
...++..
T Consensus 155 ~~~~~g~ 161 (524)
T 2xut_A 155 FTINFGS 161 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.56 E-value=4.1 Score=19.30 Aligned_cols=14 Identities=50% Similarity=0.672 Sum_probs=11.4
Q ss_pred hHhhhhhhhCchHH
Q 014905 91 LVGSLADKQGRKRA 104 (416)
Q Consensus 91 ~~G~l~Dr~Grr~~ 104 (416)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35889999999865
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=24.55 E-value=63 Score=20.99 Aligned_cols=30 Identities=7% Similarity=-0.178 Sum_probs=19.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCCCC
Q 014905 196 GPVAPFDAAACFLAFGMVIILASWTENYGD 225 (416)
Q Consensus 196 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 225 (416)
+|...+.+...+.++.+..+-...||+.++
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 566666666666666666666567876554
No 17
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=20.80 E-value=1e+02 Score=20.22 Aligned_cols=31 Identities=6% Similarity=-0.169 Sum_probs=20.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcccCCCCc
Q 014905 196 GPVAPFDAAACFLAFGMVIILASWTENYGDP 226 (416)
Q Consensus 196 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (416)
+|...+.+...+.++....+-...||+.++.
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~a 62 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQA 62 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccC
Confidence 6777777776666666666666788776543
Done!