Query 014905
Match_columns 416
No_of_seqs 563 out of 1606
Neff 10.7
Searched_HMMs 13730
Date Mon Mar 25 03:13:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014905.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014905hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 2.5E-28 1.8E-32 229.3 27.6 313 62-397 49-390 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 3.8E-23 2.8E-27 190.8 25.9 323 46-398 16-361 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 2.1E-11 1.5E-15 110.9 20.0 145 68-222 255-403 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.2 2.5E-09 1.8E-13 98.3 22.9 153 55-218 267-430 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 4.4 2.2E+02 0.016 12.9 3.4 6 218-223 22-27 (30)
6 d2gf4a1 a.8.10.1 (A:1-89) Nypo 4.2 4.2E+02 0.03 16.3 3.3 13 62-74 32-44 (89)
7 d2b0la1 a.4.5.66 (A:167-257) G 3.8 1.8E+02 0.013 17.6 1.2 20 89-108 34-53 (91)
8 d2csba2 a.60.2.4 (A:294-350) T 3.3 3.7E+02 0.027 13.9 2.1 15 94-108 7-21 (57)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.2 2.7E+02 0.019 19.7 2.0 23 82-104 166-188 (189)
10 d2iuba2 f.17.3.1 (A:286-349) M 2.9 4.6E+02 0.033 14.4 2.5 14 196-209 37-50 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=2.5e-28 Score=229.32 Aligned_cols=313 Identities=11% Similarity=0.028 Sum_probs=220.2
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hccc----hhHHHHHHHHHHHHh
Q 014905 62 YLYSTYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKHS----SEYKILMLGRIFGGI 136 (416)
Q Consensus 62 ~l~~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~~----~~~~~l~~~r~l~G~ 136 (416)
|..+|+|+|++|+|++.+++.++..++++++|+++||+|||+++.++.++.+++.+ ..+. ++++.+++.|++.|+
T Consensus 49 p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 128 (447)
T d1pw4a_ 49 PYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128 (447)
T ss_dssp HHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH
Confidence 54578999999999999999999999999999999999999999999888887766 5554 477899999999999
Q ss_pred hhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH
Q 014905 137 ATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALGPVAPFDAAACFLAFGMV 213 (416)
Q Consensus 137 ~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 213 (416)
+.+...+...+ ++.|. ++|++..++. +.+..+|. .+++.+++...+.. .+||+.|++.+.+.++..+
T Consensus 129 ~~~~~~~~~~~-~i~~~~~~~~r~~~~~~~----~~~~~~g~----~i~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~ 198 (447)
T d1pw4a_ 129 FQGMGWPPCGR-TMVHWWSQKERGGIVSVW----NCAHNVGG----GIPPLLFLLGMAWF-NDWHAALYMPAFCAILVAL 198 (447)
T ss_dssp HHHHTHHHHHH-HHHTTCTTTHHHHHHHHH----HHHHHHHH----TSHHHHHHHHHHHT-CCSTTCTHHHHHHHHHHHH
T ss_pred hhhhhhhHHHH-HHHHHHHhhccccccccc----ccccchhh----hhhhhhhhhHhhhh-hcccccchhhhhhHHHHHH
Confidence 99999998888 88876 5667764443 44444444 55555555544433 3899999998888887777
Q ss_pred HHHHhcccCCCCccc-------hhh----H-------HHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 014905 214 IILASWTENYGDPEK-------KNL----L-------AQFKGAALAIASDERIALLGAIQSLFEGSMYTFVFLWTPALSP 275 (416)
Q Consensus 214 ~~~~~~~~~~~~~~~-------~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (416)
+.+...+|.+++.+. ++. + +..+...++.++++.++.......+.....+.... +.|.|.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 277 (447)
T d1pw4a_ 199 FAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILD-WSPTYLK 277 (447)
T ss_dssp HHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHBT
T ss_pred HHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchh-hhhhhcc
Confidence 776665554432110 000 0 01122355667788888777766666666666555 8899988
Q ss_pred CCCCCc---hHHHHHHHHHHHHHhhHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccchhH
Q 014905 276 NDEEIP---HGFIFATFMLASMLGSSFASRLLAHSSLRVESYMQIVFIISSASLLIPILTNFLETPPDVRGGGISLSGSL 352 (416)
Q Consensus 276 ~~~~~~---~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (416)
+..+.+ .+.......++.+++.++.+++.||. +.++....................... .. +.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~ 345 (447)
T d1pw4a_ 278 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV--FRGNRGATGVFFMTLVTIATIVYWMNP-------AG---NPTV 345 (447)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--STTCHHHHHHHHHHHHHHHHHHTTSCC-------TT---CHHH
T ss_pred cccccccchhhhhhhcchhhhhhhhhhhhhhhhhc--cccccccccchhHHHHHHHHHHHHhcc-------cc---cHHH
Confidence 876664 67777778889999999999999994 333322222221111111111111110 00 4566
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHhccCCccccceeeeeeecccce
Q 014905 353 QLIGFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNV 397 (416)
Q Consensus 353 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~~~~~~~~ 397 (416)
..+...+.++..+...+....+..|.+|++.||++.|+.+...++
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 390 (447)
T d1pw4a_ 346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 390 (447)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 666777777887778888899999999999999999988766555
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=3.8e-23 Score=190.80 Aligned_cols=323 Identities=14% Similarity=0.058 Sum_probs=199.5
Q ss_pred HHHHHHHHHhHHHHHHHHH--HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hccch
Q 014905 46 YSLMMAGDWLQGPYVYYLY--STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKHSS 122 (416)
Q Consensus 46 ~~~~~~~~~~~~~~l~~l~--~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~~~ 122 (416)
+++...+.....|++ |.| +++|.|++++|++.+++.++..+++++.|+++||+||||+++++.....++.. .....
T Consensus 16 ~f~~~~~~~~~~~~l-~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T d1pv7a_ 16 FFFYFFIMGAYFPFF-PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhh
Confidence 336667777888898 665 67899999999999999999999999999999999999999998877777666 44444
Q ss_pred hHHH----HHHHHHHHHhhhhhhhhhhhhhhhh---hh-cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Q 014905 123 EYKI----LMLGRIFGGIATSLLFSAFESWLVA---EH-NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLA 194 (416)
Q Consensus 123 ~~~~----l~~~r~l~G~~~~~~~~~~~~~~i~---e~-~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 194 (416)
+... .++.+.+.+.+.+............ +. +++..... ....+...+. .+++.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~~~l~~~-- 164 (417)
T d1pv7a_ 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFG----RARMFGCVGW----ALGASIVGIMFTI-- 164 (417)
T ss_dssp HHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHH----HHHHHHHHHH----HHHHHHHHHHHHH--
T ss_pred hhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHH----HHhhhhcccc----ccccccccccccc--
Confidence 4332 3444555555444444333331111 11 33333322 2222233334 6666777766655
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhcccCCCCccchhhHHH-----hhhHHHhhhcchhHHHHHHHHH---HHHHHHHHHH
Q 014905 195 LGPVAPFDAAACFLAFGMVIILASWTENYGDPEKKNLLAQ-----FKGAALAIASDERIALLGAIQS---LFEGSMYTFV 266 (416)
Q Consensus 195 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 266 (416)
+|+..+........+.........+|+++++++++.+++ .+...++..+++.......... ..........
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T d1pv7a_ 165 -NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF 243 (417)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccc
Confidence 677777776666666666665556655544332221111 1122333334433332222222 2222222211
Q ss_pred HhhhcccccCCCCC---chHHHHHHHHHHHHHhhHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 014905 267 FLWTPALSPNDEEI---PHGFIFATFMLASMLGSSFASRLLAHSSLRVESYMQIVFIISSASLLIPILTNFLETPPDVRG 343 (416)
Q Consensus 267 ~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (416)
..+.+... +..+. ..+.......++..++..+.+++.|| .+.++.+..+..+..+.........
T Consensus 244 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r--~~~~~~~~~~~~~~~~~~~~~~~~~---------- 310 (417)
T d1pv7a_ 244 ANFFTSFF-ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR--IGGKNALLLAGTIMSVRIIGSSFAT---------- 310 (417)
T ss_dssp HHHHTTSS-SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred cccccccc-cccccchhhhcccccccccccccchhhhhhhhcc--cccccchhhhHHHHHHhhhcccccc----------
Confidence 21222222 11111 24556666688888999999999999 7777777776666655544433332
Q ss_pred CCcccchhHHHHHHHHHHHhhhcchhHHHHHHhccCCccccceeeeee-eccccee
Q 014905 344 GGISLSGSLQLIGFSTFEACVGIFWPSIMKMRSQYIPEEARSTIMNFF-RIPLNVF 398 (416)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~rg~~~g~~-~~~~~~~ 398 (416)
+.+...+...+.+++.+...+...++++|.+|++.|++++|+. ++..++.
T Consensus 311 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 361 (417)
T d1pv7a_ 311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA 361 (417)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence 5677778888889999999999999999999999999999974 4444443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.37 E-value=2.1e-11 Score=110.89 Aligned_cols=145 Identities=8% Similarity=0.010 Sum_probs=114.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHHHHHhhhh-hccchhHHHHHHHHHHHHhhhhhhhhhhh
Q 014905 68 GFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCITYMLSCV-TKHSSEYKILMLGRIFGGIATSLLFSAFE 146 (416)
Q Consensus 68 ~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~l-~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 146 (416)
+.+..+.+...+...++..++..+.+++.||+|||+.+.++.....++.+ ..+.++.+.+.+..++.|++.+...+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 334 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34556678888888999999999999999999999999999888888888 88889999999999999999999988888
Q ss_pred hhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHhcccC
Q 014905 147 SWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALGPVAPFDAAACFLAFGMVIILASWTEN 222 (416)
Q Consensus 147 ~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 222 (416)
+ ++.|. ++|+...+ ...+.+..+|. .++|.+.+.+.+.. |++..|++.+++.++..++..+..+++
T Consensus 335 ~-~~~~~~~~~~~~~~~~---~~~~~~~~~g~----~i~~~~~G~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 335 K-YITSQFEVRFSATIYL---VCFCFFKQLAM----IFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp H-HHHHHSCGGGHHHHHH---HHHTTTHHHHH----HHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred H-HHHHHCCHhHHHHHHH---HHHHHHHHHHH----HHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 8 88876 44454422 12233333444 78888889998887 999999998888877777666555443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.17 E-value=2.5e-09 Score=98.31 Aligned_cols=153 Identities=12% Similarity=0.004 Sum_probs=104.4
Q ss_pred hHHHHHHHHH--HHcCCChhhHHHHHHHHHHHHHHHHhhHhhhhhhhCchHHHHHHHH---HHHhhhh---hccchhHHH
Q 014905 55 LQGPYVYYLY--STYGFGKGEIGQLFIAGFGSSMLFGTLVGSLADKQGRKRACVTYCI---TYMLSCV---TKHSSEYKI 126 (416)
Q Consensus 55 ~~~~~l~~l~--~~~~~s~~~~g~i~~~~~~~~~i~~~~~G~l~Dr~Grr~~l~~~~~---~~~~~~l---~~~~~~~~~ 126 (416)
....+. +.| +.++.+..+.+...+...+...++.++.|+++||++||+....... ....+.. .....+.+.
T Consensus 267 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (447)
T d1pw4a_ 267 GILDWS-PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345 (447)
T ss_dssp HHHHHH-HHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH
T ss_pred cchhhh-hhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHH
Confidence 334455 556 5789999999999999999999999999999999998764333322 2222222 233456777
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhh---cccCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccCchhHHHH
Q 014905 127 LMLGRIFGGIATSLLFSAFESWLVAEH---NKRGFDQQWLSETFSKAIFLGNGLVAIISGLFGNLLVDTLALGPVAPFDA 203 (416)
Q Consensus 127 l~~~r~l~G~~~~~~~~~~~~~~i~e~---~~r~~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~~w~~~f~~ 203 (416)
..+.-++.|++.+...+.... +..|. ++|+...++. ...+...|. +.+|.+.+.+.+.. ||+..|.+
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~~~g~~~g~~---~~~~~~~g~----~~~~~~~g~~~~~~--g~~~~~~~ 415 (447)
T d1pw4a_ 346 DMICMIVIGFLIYGPVMLIGL-HALELAPKKAAGTAAGFT---GLFGYLGGS----VAASAIVGYTVDFF--GWDGGFMV 415 (447)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH-HHHHTSCTTHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHSS--CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHh--ChHHHHHH
Confidence 788888888888777776666 66666 4455543322 112222233 67788888888887 99999988
Q ss_pred HHHHHHHHHHHHHHh
Q 014905 204 AACFLAFGMVIILAS 218 (416)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (416)
.....++..++....
T Consensus 416 ~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 416 MIGGSILAVILLIVV 430 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 877777666655544
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.40 E-value=2.2e+02 Score=12.87 Aligned_cols=6 Identities=17% Similarity=0.013 Sum_probs=2.9
Q ss_pred hcccCC
Q 014905 218 SWTENY 223 (416)
Q Consensus 218 ~~~~~~ 223 (416)
+.+|.|
T Consensus 22 ffrepp 27 (30)
T d2axtt1 22 FFREPP 27 (30)
T ss_dssp HTSCCC
T ss_pred HhcCCC
Confidence 445544
No 6
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c {Halobacterium salinarium [TaxId: 2242]}
Probab=4.22 E-value=4.2e+02 Score=16.28 Aligned_cols=13 Identities=8% Similarity=0.187 Sum_probs=9.2
Q ss_pred HHHHHcCCChhhH
Q 014905 62 YLYSTYGFGKGEI 74 (416)
Q Consensus 62 ~l~~~~~~s~~~~ 74 (416)
.-|++++++|..+
T Consensus 32 ~~Y~~L~i~P~hI 44 (89)
T d2gf4a1 32 AAYEELDVEPSHV 44 (89)
T ss_dssp HHHHHHTCCTTCT
T ss_pred hHHHHcCCCHHHh
Confidence 5567788887666
No 7
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=3.75 E-value=1.8e+02 Score=17.57 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=14.2
Q ss_pred HhhHhhhhhhhCchHHHHHH
Q 014905 89 GTLVGSLADKQGRKRACVTY 108 (416)
Q Consensus 89 ~~~~G~l~Dr~Grr~~l~~~ 108 (416)
-+.+..++||.|--|..+.-
T Consensus 34 llvASkiADrvgiTRSVIVN 53 (91)
T d2b0la1 34 LLVASKIADRVGITRSVIVN 53 (91)
T ss_dssp EECHHHHHHHHTCCHHHHHH
T ss_pred eEeehhhhhhhCchHHHHHH
Confidence 34567899999976665544
No 8
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.35 E-value=3.7e+02 Score=13.88 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=10.1
Q ss_pred hhhhhhCchHHHHHH
Q 014905 94 SLADKQGRKRACVTY 108 (416)
Q Consensus 94 ~l~Dr~Grr~~l~~~ 108 (416)
.+-||||-|--...+
T Consensus 7 klqdrygiredvalc 21 (57)
T d2csba2 7 KLQDRYGIREDVALC 21 (57)
T ss_dssp HHHHHHCCCHHHHHH
T ss_pred ehhhhhccHHHHHHH
Confidence 567899977654443
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.15 E-value=2.7e+02 Score=19.66 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=16.0
Q ss_pred HHHHHHHHhhHhhhhhhhCchHH
Q 014905 82 FGSSMLFGTLVGSLADKQGRKRA 104 (416)
Q Consensus 82 ~~~~~i~~~~~G~l~Dr~Grr~~ 104 (416)
-++..+.....|++..|..||+.
T Consensus 166 Hl~G~l~G~~~g~~~~~~~k~~~ 188 (189)
T d2nr9a1 166 HISGLIVGLIWGFIDSKLRKNSL 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccccc
Confidence 45666777777888877777663
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.88 E-value=4.6e+02 Score=14.43 Aligned_cols=14 Identities=0% Similarity=-0.130 Sum_probs=3.7
Q ss_pred CchhHHHHHHHHHH
Q 014905 196 GPVAPFDAAACFLA 209 (416)
Q Consensus 196 ~w~~~f~~~~~~~~ 209 (416)
+|...|+....+.+
T Consensus 37 ~~~~~~~~~~~~~~ 50 (64)
T d2iuba2 37 RWKWGYPVVLAVMG 50 (64)
T ss_dssp -----CHHHHHHHH
T ss_pred CccHHHHHHHHHHH
Confidence 44444444433333
Done!