Query 014906
Match_columns 416
No_of_seqs 182 out of 1633
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 01:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 2.5E-62 5.4E-67 471.8 32.6 317 78-405 11-332 (336)
2 COG0667 Tas Predicted oxidored 100.0 4.4E-61 9.5E-66 470.9 34.2 303 81-401 3-312 (316)
3 COG0656 ARA1 Aldo/keto reducta 100.0 4.3E-58 9.3E-63 434.7 26.7 260 79-401 5-267 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 2.3E-56 4.9E-61 439.7 32.0 302 82-396 2-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 1E-55 2.3E-60 439.7 33.1 307 81-399 15-334 (346)
6 PRK10625 tas putative aldo-ket 100.0 7.5E-55 1.6E-59 433.8 32.6 296 82-398 4-339 (346)
7 PLN02587 L-galactose dehydroge 100.0 2.4E-54 5.2E-59 424.8 33.2 286 82-399 2-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.1E-52 2.4E-57 407.0 30.9 277 82-395 2-284 (285)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 3.3E-52 7.1E-57 400.5 29.1 251 90-401 2-255 (267)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.5E-52 3.3E-57 405.6 26.9 279 93-397 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 2.3E-52 4.9E-57 395.8 25.0 267 79-401 6-288 (300)
12 PRK14863 bifunctional regulato 100.0 3.5E-52 7.7E-57 404.7 24.9 268 88-394 2-278 (292)
13 PRK10376 putative oxidoreducta 100.0 7.4E-51 1.6E-55 395.7 30.7 269 81-399 9-289 (290)
14 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.1E-50 2.5E-55 391.3 28.0 255 86-401 10-265 (275)
15 COG4989 Predicted oxidoreducta 100.0 2.2E-46 4.7E-51 340.8 21.5 276 81-398 3-293 (298)
16 COG1453 Predicted oxidoreducta 100.0 2E-45 4.4E-50 351.8 24.1 275 82-405 4-292 (391)
17 KOG1576 Predicted oxidoreducta 100.0 2.3E-42 5E-47 316.6 25.5 276 82-387 25-310 (342)
18 KOG3023 Glutamate-cysteine lig 97.6 0.00015 3.2E-09 67.0 6.7 72 209-281 155-227 (285)
19 PF07021 MetW: Methionine bios 89.8 5.9 0.00013 36.1 11.5 151 115-287 5-172 (193)
20 cd03174 DRE_TIM_metallolyase D 85.9 5.4 0.00012 37.7 9.5 106 172-281 15-135 (265)
21 cd03319 L-Ala-DL-Glu_epimerase 85.8 22 0.00048 34.7 14.0 152 109-286 134-291 (316)
22 PRK10558 alpha-dehydro-beta-de 84.9 11 0.00024 35.9 11.0 67 216-283 10-78 (256)
23 cd06543 GH18_PF-ChiA-like PF-C 83.5 19 0.0004 35.2 12.0 81 141-222 56-136 (294)
24 PRK05692 hydroxymethylglutaryl 81.8 53 0.0011 31.9 19.7 214 172-401 22-282 (287)
25 PRK00208 thiG thiazole synthas 81.3 51 0.0011 31.3 14.9 107 171-280 71-181 (250)
26 TIGR03239 GarL 2-dehydro-3-deo 80.9 20 0.00044 34.1 11.0 63 220-283 7-71 (249)
27 PRK08392 hypothetical protein; 80.4 48 0.001 30.5 13.9 146 112-279 15-179 (215)
28 PRK10128 2-keto-3-deoxy-L-rham 79.7 28 0.00061 33.5 11.6 66 216-282 9-76 (267)
29 COG3653 N-acyl-D-aspartate/D-g 78.8 84 0.0018 32.4 15.3 133 112-275 183-330 (579)
30 PRK08609 hypothetical protein; 77.4 46 0.001 35.7 13.5 152 112-279 350-523 (570)
31 PRK05414 urocanate hydratase; 77.0 6 0.00013 41.1 6.3 64 183-254 201-266 (556)
32 TIGR01228 hutU urocanate hydra 76.9 5.9 0.00013 40.9 6.2 64 183-254 192-257 (545)
33 PF05913 DUF871: Bacterial pro 74.1 7 0.00015 39.2 5.9 148 109-284 12-179 (357)
34 PRK06740 histidinol-phosphatas 73.2 1E+02 0.0022 30.6 15.8 100 181-281 157-291 (331)
35 cd04728 ThiG Thiazole synthase 72.6 89 0.0019 29.7 15.8 107 171-280 71-181 (248)
36 COG1140 NarY Nitrate reductase 71.4 2.3 4.9E-05 42.4 1.6 55 222-276 263-317 (513)
37 PRK00164 moaA molybdenum cofac 70.9 1.1E+02 0.0024 30.0 15.4 155 107-278 48-227 (331)
38 PRK14017 galactonate dehydrata 70.4 1.1E+02 0.0025 30.7 13.9 83 194-282 203-287 (382)
39 TIGR01290 nifB nitrogenase cof 70.1 54 0.0012 34.0 11.5 110 172-287 59-200 (442)
40 TIGR00735 hisF imidazoleglycer 69.8 1E+02 0.0022 29.2 14.9 151 116-277 88-253 (254)
41 TIGR02311 HpaI 2,4-dihydroxyhe 69.4 66 0.0014 30.5 11.2 66 217-282 4-70 (249)
42 PRK07328 histidinol-phosphatas 69.4 1.1E+02 0.0023 29.2 17.0 158 112-279 19-226 (269)
43 TIGR01928 menC_lowGC/arch o-su 68.9 1.2E+02 0.0027 29.8 15.0 154 109-287 132-287 (324)
44 PF01175 Urocanase: Urocanase; 68.3 10 0.00023 39.4 5.7 64 183-254 191-256 (546)
45 PRK07945 hypothetical protein; 66.9 1.4E+02 0.003 29.7 17.2 154 110-279 110-289 (335)
46 cd04740 DHOD_1B_like Dihydroor 66.7 1.3E+02 0.0027 29.1 14.4 153 109-275 100-286 (296)
47 cd07939 DRE_TIM_NifV Streptomy 66.6 1.2E+02 0.0026 28.8 14.3 100 171-278 15-127 (259)
48 cd03315 MLE_like Muconate lact 66.2 1.2E+02 0.0026 28.7 15.8 156 109-286 85-243 (265)
49 PRK13352 thiamine biosynthesis 65.4 1.7E+02 0.0036 30.0 17.4 143 108-278 74-223 (431)
50 cd03316 MR_like Mandelate race 65.0 1.5E+02 0.0032 29.4 16.2 154 109-281 139-298 (357)
51 cd07943 DRE_TIM_HOA 4-hydroxy- 64.9 64 0.0014 30.7 10.2 106 172-280 18-131 (263)
52 COG2987 HutU Urocanate hydrata 64.7 14 0.0003 37.9 5.6 59 185-251 203-261 (561)
53 PRK06361 hypothetical protein; 64.5 1.1E+02 0.0025 27.7 16.7 184 112-352 11-200 (212)
54 cd07944 DRE_TIM_HOA_like 4-hyd 64.3 65 0.0014 30.9 10.1 106 171-280 15-128 (266)
55 cd00308 enolase_like Enolase-s 64.1 53 0.0012 30.4 9.4 87 194-286 120-208 (229)
56 PRK05588 histidinol-phosphatas 63.7 1.3E+02 0.0029 28.3 17.2 155 111-281 16-216 (255)
57 COG1751 Uncharacterized conser 63.4 97 0.0021 27.2 9.7 88 197-286 2-95 (186)
58 cd00423 Pterin_binding Pterin 62.1 1.5E+02 0.0032 28.2 13.0 103 173-282 21-128 (258)
59 PRK06424 transcription factor; 61.1 31 0.00068 29.9 6.6 60 327-386 82-141 (144)
60 COG1748 LYS9 Saccharopine dehy 61.0 44 0.00096 34.0 8.6 80 112-205 80-159 (389)
61 TIGR00381 cdhD CO dehydrogenas 61.0 1.8E+02 0.0038 29.6 12.6 92 187-286 150-252 (389)
62 TIGR02026 BchE magnesium-proto 60.7 1.1E+02 0.0023 32.2 11.8 157 107-275 221-392 (497)
63 TIGR00221 nagA N-acetylglucosa 58.7 2.1E+02 0.0046 29.0 13.6 134 109-247 75-214 (380)
64 COG2355 Zn-dependent dipeptida 58.4 61 0.0013 31.9 8.8 30 364-395 270-300 (313)
65 TIGR00190 thiC thiamine biosyn 58.2 2.2E+02 0.0048 29.1 19.0 143 108-278 74-220 (423)
66 COG0135 TrpF Phosphoribosylant 58.1 84 0.0018 29.1 9.2 80 187-278 19-102 (208)
67 TIGR03822 AblA_like_2 lysine-2 57.4 2E+02 0.0043 28.3 13.2 110 174-287 120-240 (321)
68 TIGR01496 DHPS dihydropteroate 57.1 1.7E+02 0.0037 27.9 11.5 101 172-281 19-125 (257)
69 cd07948 DRE_TIM_HCS Saccharomy 56.2 1.1E+02 0.0025 29.2 10.2 103 171-281 17-132 (262)
70 PRK13361 molybdenum cofactor b 55.7 2.1E+02 0.0046 28.1 13.4 119 107-242 44-176 (329)
71 PRK13796 GTPase YqeH; Provisio 55.6 2.1E+02 0.0045 28.8 12.5 124 108-242 54-180 (365)
72 cd03327 MR_like_2 Mandelate ra 55.5 2.2E+02 0.0047 28.2 13.8 150 109-281 120-280 (341)
73 PRK04452 acetyl-CoA decarbonyl 54.5 2.3E+02 0.0049 28.1 14.4 94 185-283 84-184 (319)
74 cd00537 MTHFR Methylenetetrahy 54.3 1.6E+02 0.0035 28.1 11.0 99 172-276 69-188 (274)
75 PRK01222 N-(5'-phosphoribosyl) 54.2 70 0.0015 29.5 8.1 65 188-256 21-86 (210)
76 PRK13753 dihydropteroate synth 54.0 2.2E+02 0.0047 27.7 14.9 104 172-284 21-129 (279)
77 PRK13958 N-(5'-phosphoribosyl) 53.7 37 0.00081 31.2 6.2 67 186-256 17-84 (207)
78 TIGR01378 thi_PPkinase thiamin 53.1 1.1E+02 0.0025 27.9 9.4 40 342-381 71-110 (203)
79 PRK15108 biotin synthase; Prov 53.0 2.5E+02 0.0053 28.0 14.2 110 173-286 76-196 (345)
80 cd03322 rpsA The starvation se 52.9 64 0.0014 32.3 8.3 146 109-282 126-273 (361)
81 PF05690 ThiG: Thiazole biosyn 51.5 2.2E+02 0.0047 27.0 11.2 107 172-281 72-182 (247)
82 PRK06015 keto-hydroxyglutarate 51.2 47 0.001 30.6 6.4 88 174-279 14-102 (201)
83 TIGR03822 AblA_like_2 lysine-2 51.0 2.5E+02 0.0055 27.6 14.1 107 108-224 119-228 (321)
84 PRK08195 4-hyroxy-2-oxovalerat 50.8 1.6E+02 0.0034 29.4 10.5 105 170-280 19-134 (337)
85 TIGR03217 4OH_2_O_val_ald 4-hy 50.2 1.7E+02 0.0037 29.1 10.7 102 171-279 19-132 (333)
86 TIGR02534 mucon_cyclo muconate 50.2 45 0.00097 33.5 6.7 87 194-286 213-301 (368)
87 cd03318 MLE Muconate Lactonizi 50.0 48 0.001 33.1 6.9 84 195-284 215-300 (365)
88 PRK07259 dihydroorotate dehydr 49.0 2.6E+02 0.0055 27.1 12.9 153 109-275 102-289 (301)
89 TIGR00126 deoC deoxyribose-pho 49.0 1.1E+02 0.0023 28.4 8.4 71 108-193 129-205 (211)
90 PRK09613 thiH thiamine biosynt 49.0 3.1E+02 0.0067 28.7 12.7 109 172-283 114-241 (469)
91 PF03102 NeuB: NeuB family; I 48.5 62 0.0013 30.7 6.9 113 108-236 53-183 (241)
92 COG1902 NemA NADH:flavin oxido 48.2 3.1E+02 0.0066 27.7 14.7 64 182-245 242-310 (363)
93 PF00356 LacI: Bacterial regul 47.9 28 0.0006 23.9 3.3 42 334-383 2-43 (46)
94 cd04731 HisF The cyclase subun 47.8 2.4E+02 0.0051 26.3 15.4 160 90-273 71-243 (243)
95 PLN02428 lipoic acid synthase 47.4 3.1E+02 0.0067 27.5 15.4 160 108-285 130-325 (349)
96 PRK07329 hypothetical protein; 47.0 2.5E+02 0.0054 26.3 13.3 101 180-281 83-215 (246)
97 TIGR01182 eda Entner-Doudoroff 46.8 71 0.0015 29.4 6.9 88 174-279 18-106 (204)
98 cd01948 EAL EAL domain. This d 46.7 1.1E+02 0.0024 27.7 8.4 102 176-281 98-209 (240)
99 PRK02083 imidazole glycerol ph 46.4 2.6E+02 0.0055 26.3 15.8 85 187-277 163-251 (253)
100 COG2022 ThiG Uncharacterized e 46.4 66 0.0014 30.3 6.4 74 171-245 78-151 (262)
101 PRK14461 ribosomal RNA large s 45.8 1.3E+02 0.0029 30.4 9.0 88 197-285 232-352 (371)
102 COG3867 Arabinogalactan endo-1 45.4 2.2E+02 0.0047 28.0 9.9 120 121-254 52-178 (403)
103 COG4464 CapC Capsular polysacc 45.3 1E+02 0.0022 28.8 7.4 41 107-147 16-61 (254)
104 CHL00200 trpA tryptophan synth 45.1 2.9E+02 0.0062 26.5 14.8 28 108-135 26-53 (263)
105 PRK15072 bifunctional D-altron 44.8 1.3E+02 0.0029 30.6 9.2 83 194-282 232-316 (404)
106 PLN02389 biotin synthase 44.7 3.5E+02 0.0076 27.4 12.7 109 172-285 115-237 (379)
107 PRK09856 fructoselysine 3-epim 43.1 2.9E+02 0.0063 26.0 10.9 20 265-284 94-113 (275)
108 cd03325 D-galactonate_dehydrat 41.3 3.7E+02 0.008 26.7 14.4 82 194-281 202-285 (352)
109 PRK02399 hypothetical protein; 41.1 63 0.0014 33.0 6.0 57 181-247 203-273 (406)
110 PRK08776 cystathionine gamma-s 41.1 2.6E+02 0.0057 28.4 10.7 88 195-287 100-188 (405)
111 COG2089 SpsE Sialic acid synth 41.0 3.6E+02 0.0077 26.9 10.8 116 108-243 87-224 (347)
112 PRK09248 putative hydrolase; V 40.6 3.1E+02 0.0067 25.6 15.3 155 112-281 20-192 (246)
113 PRK06552 keto-hydroxyglutarate 40.4 86 0.0019 29.1 6.4 88 174-279 23-114 (213)
114 PF01081 Aldolase: KDPG and KH 40.4 94 0.002 28.4 6.6 87 175-279 19-106 (196)
115 PF00682 HMGL-like: HMGL-like 40.3 2.6E+02 0.0057 25.7 9.9 98 173-277 11-124 (237)
116 cd00452 KDPG_aldolase KDPG and 39.9 2.8E+02 0.006 24.8 15.0 110 109-253 14-123 (190)
117 PF00809 Pterin_bind: Pterin b 38.9 93 0.002 28.6 6.4 90 187-283 29-125 (210)
118 cd06543 GH18_PF-ChiA-like PF-C 38.1 3.9E+02 0.0084 26.0 15.2 180 94-286 72-265 (294)
119 cd00959 DeoC 2-deoxyribose-5-p 38.0 1.7E+02 0.0036 26.6 8.0 69 108-191 128-202 (203)
120 PLN02363 phosphoribosylanthran 37.9 95 0.0021 29.7 6.4 75 174-256 56-131 (256)
121 PRK09058 coproporphyrinogen II 37.5 4.4E+02 0.0095 27.3 11.8 27 174-201 228-254 (449)
122 PF13378 MR_MLE_C: Enolase C-t 37.4 53 0.0011 26.5 4.1 54 231-286 3-57 (111)
123 PRK05283 deoxyribose-phosphate 37.2 2E+02 0.0043 27.5 8.4 78 108-195 143-227 (257)
124 cd03323 D-glucarate_dehydratas 36.7 1.7E+02 0.0038 29.7 8.6 148 109-283 168-321 (395)
125 TIGR02660 nifV_homocitr homoci 36.6 4.5E+02 0.0098 26.3 16.2 100 171-278 18-130 (365)
126 cd00739 DHPS DHPS subgroup of 36.5 3.8E+02 0.0083 25.5 16.5 103 172-281 20-127 (257)
127 TIGR03471 HpnJ hopanoid biosyn 36.3 4.5E+02 0.0098 27.2 11.8 66 209-276 322-393 (472)
128 PRK07003 DNA polymerase III su 36.1 6.7E+02 0.015 28.2 13.7 77 174-258 100-178 (830)
129 PRK14457 ribosomal RNA large s 36.1 3.2E+02 0.007 27.3 10.1 108 178-285 196-330 (345)
130 TIGR02811 formate_TAT formate 35.9 35 0.00076 25.5 2.5 14 17-30 8-23 (66)
131 TIGR01502 B_methylAsp_ase meth 35.2 2.2E+02 0.0048 29.2 9.0 106 173-283 245-357 (408)
132 TIGR02026 BchE magnesium-proto 34.9 5.6E+02 0.012 26.9 12.6 71 209-281 224-304 (497)
133 TIGR01278 DPOR_BchB light-inde 34.9 4.9E+02 0.011 27.4 11.9 71 178-248 100-191 (511)
134 COG0635 HemN Coproporphyrinoge 34.5 2.7E+02 0.0059 28.6 9.6 60 174-235 202-276 (416)
135 PRK07535 methyltetrahydrofolat 34.4 4.2E+02 0.009 25.3 12.5 99 174-281 23-123 (261)
136 TIGR03278 methan_mark_10 putat 34.3 5.3E+02 0.011 26.4 11.6 19 211-229 90-108 (404)
137 TIGR03070 couple_hipB transcri 34.0 39 0.00085 23.2 2.5 21 332-352 5-25 (58)
138 cd03324 rTSbeta_L-fuconate_deh 33.6 5.4E+02 0.012 26.4 14.4 151 109-281 196-352 (415)
139 PTZ00081 enolase; Provisional 33.5 3.7E+02 0.0081 27.8 10.4 97 173-280 281-382 (439)
140 PRK10128 2-keto-3-deoxy-L-rham 33.4 3.2E+02 0.007 26.2 9.3 68 190-259 166-244 (267)
141 PLN00191 enolase 33.3 3.9E+02 0.0086 27.8 10.6 97 173-280 295-394 (457)
142 TIGR02080 O_succ_thio_ly O-suc 33.1 4.4E+02 0.0095 26.5 10.8 87 195-286 91-178 (382)
143 PF06174 DUF987: Protein of un 33.0 13 0.00028 27.1 -0.2 9 5-13 35-43 (66)
144 TIGR01060 eno phosphopyruvate 32.8 5.6E+02 0.012 26.3 13.7 96 173-279 262-362 (425)
145 PRK11858 aksA trans-homoaconit 32.7 5.3E+02 0.011 26.0 13.9 102 171-280 21-135 (378)
146 cd04742 NPD_FabD 2-Nitropropan 32.7 1.9E+02 0.0042 29.7 8.0 90 186-282 7-103 (418)
147 PRK07114 keto-hydroxyglutarate 32.6 3.9E+02 0.0084 24.9 9.5 90 174-278 25-116 (222)
148 TIGR01856 hisJ_fam histidinol 32.6 4.3E+02 0.0092 24.8 16.3 23 111-133 15-37 (253)
149 TIGR03550 F420_cofG 7,8-dideme 32.2 4.9E+02 0.011 25.5 12.1 72 212-283 86-171 (322)
150 PRK06256 biotin synthase; Vali 32.2 4.4E+02 0.0095 25.8 10.5 145 105-266 88-246 (336)
151 COG2069 CdhD CO dehydrogenase/ 32.1 5E+02 0.011 25.5 11.3 98 176-284 154-261 (403)
152 TIGR02090 LEU1_arch isopropylm 31.9 4.7E+02 0.01 26.2 10.7 99 172-278 18-129 (363)
153 PF06792 UPF0261: Uncharacteri 31.7 1.1E+02 0.0023 31.4 5.9 48 193-247 211-272 (403)
154 PRK12928 lipoyl synthase; Prov 31.7 4.9E+02 0.011 25.2 13.3 77 208-285 186-282 (290)
155 COG2102 Predicted ATPases of P 31.2 1.5E+02 0.0032 27.7 6.3 99 208-346 74-177 (223)
156 cd07995 TPK Thiamine pyrophosp 31.2 4E+02 0.0087 24.2 9.4 40 342-381 75-114 (208)
157 TIGR01428 HAD_type_II 2-haloal 30.9 1.3E+02 0.0028 26.7 6.0 96 178-276 61-164 (198)
158 PF13407 Peripla_BP_4: Peripla 30.9 1.8E+02 0.0039 26.7 7.2 72 176-254 14-89 (257)
159 cd00740 MeTr MeTr subgroup of 30.9 4.7E+02 0.01 24.8 13.3 103 173-283 23-128 (252)
160 PF10668 Phage_terminase: Phag 30.8 91 0.002 22.8 3.9 20 332-352 23-42 (60)
161 PRK13803 bifunctional phosphor 30.6 2.5E+02 0.0054 30.5 8.9 68 187-256 20-88 (610)
162 TIGR02764 spore_ybaN_pdaB poly 30.4 3.9E+02 0.0084 23.7 9.1 46 174-224 137-182 (191)
163 smart00052 EAL Putative diguan 30.4 2.4E+02 0.0052 25.5 7.9 100 177-281 100-210 (241)
164 PRK11613 folP dihydropteroate 30.4 5.1E+02 0.011 25.1 10.3 101 173-281 35-140 (282)
165 TIGR00048 radical SAM enzyme, 30.3 3.8E+02 0.0083 26.8 9.7 89 197-285 219-333 (355)
166 PRK08861 cystathionine gamma-s 30.1 5.9E+02 0.013 25.7 11.4 89 194-287 92-181 (388)
167 PRK11840 bifunctional sulfur c 30.1 3.8E+02 0.0082 26.6 9.2 74 171-245 145-218 (326)
168 PF07287 DUF1446: Protein of u 30.0 2E+02 0.0043 29.1 7.5 18 264-281 61-78 (362)
169 cd02801 DUS_like_FMN Dihydrour 30.0 4.3E+02 0.0092 24.0 11.1 124 109-244 65-204 (231)
170 cd03313 enolase Enolase: Enola 29.9 5E+02 0.011 26.5 10.7 96 173-279 261-361 (408)
171 TIGR03700 mena_SCO4494 putativ 29.9 5.6E+02 0.012 25.4 13.5 111 172-286 78-213 (351)
172 PRK07535 methyltetrahydrofolat 29.8 4.2E+02 0.009 25.3 9.5 57 209-284 173-231 (261)
173 PLN02540 methylenetetrahydrofo 29.7 7.3E+02 0.016 26.7 20.5 152 110-277 14-198 (565)
174 COG4130 Predicted sugar epimer 29.4 4.7E+02 0.01 24.5 9.0 54 234-287 50-109 (272)
175 PF11020 DUF2610: Domain of un 29.0 1.2E+02 0.0025 23.5 4.3 30 325-355 48-77 (82)
176 PRK01045 ispH 4-hydroxy-3-meth 29.0 2.4E+02 0.0053 27.6 7.7 44 332-378 226-275 (298)
177 PRK02866 cyanate hydratase; Va 28.8 86 0.0019 27.3 4.1 65 333-399 9-73 (147)
178 TIGR03821 AblA_like_1 lysine-2 28.8 5.7E+02 0.012 25.1 12.4 75 212-287 161-246 (321)
179 COG1168 MalY Bifunctional PLP- 28.5 5.5E+02 0.012 26.1 10.1 50 234-283 146-200 (388)
180 PRK09140 2-dehydro-3-deoxy-6-p 28.3 4.7E+02 0.01 24.0 14.5 107 109-247 20-126 (206)
181 PRK06294 coproporphyrinogen II 28.3 6.2E+02 0.013 25.3 11.1 60 173-234 167-242 (370)
182 TIGR00423 radical SAM domain p 27.8 5.7E+02 0.012 24.8 11.3 110 172-285 35-169 (309)
183 PF09989 DUF2229: CoA enzyme a 27.8 3.3E+02 0.0071 25.3 8.2 35 247-281 185-219 (221)
184 COG2185 Sbm Methylmalonyl-CoA 27.7 2.1E+02 0.0046 24.8 6.2 56 227-287 19-76 (143)
185 PF01964 ThiC: ThiC family; I 27.7 3.7E+02 0.008 27.5 8.8 150 108-286 73-227 (420)
186 TIGR03128 RuMP_HxlA 3-hexulose 27.5 3.9E+02 0.0084 24.0 8.6 94 174-279 10-107 (206)
187 cd03321 mandelate_racemase Man 27.4 1.9E+02 0.0042 28.7 7.0 96 173-280 197-294 (355)
188 PF07745 Glyco_hydro_53: Glyco 27.3 1.5E+02 0.0033 29.5 6.1 116 119-254 11-132 (332)
189 PRK08045 cystathionine gamma-s 27.0 4.2E+02 0.0092 26.7 9.5 74 213-286 105-179 (386)
190 PF14871 GHL6: Hypothetical gl 27.0 65 0.0014 27.4 3.0 25 260-284 43-67 (132)
191 PRK07811 cystathionine gamma-s 26.9 5.2E+02 0.011 26.0 10.2 90 193-287 99-189 (388)
192 PRK00077 eno enolase; Provisio 26.9 7.1E+02 0.015 25.6 14.2 96 173-279 261-361 (425)
193 PLN02681 proline dehydrogenase 26.7 7.5E+02 0.016 25.8 15.2 165 112-285 221-413 (455)
194 PF06506 PrpR_N: Propionate ca 26.5 2.4E+02 0.0053 24.9 6.9 67 209-281 63-132 (176)
195 PTZ00413 lipoate synthase; Pro 26.1 7.2E+02 0.016 25.4 13.5 114 172-286 176-306 (398)
196 TIGR03569 NeuB_NnaB N-acetylne 26.1 6.6E+02 0.014 24.9 10.9 133 108-257 73-226 (329)
197 cd03317 NAAAR N-acylamino acid 26.0 2.4E+02 0.0051 28.0 7.4 147 111-285 139-290 (354)
198 cd02932 OYE_YqiM_FMN Old yello 25.8 6.4E+02 0.014 24.7 14.1 32 214-245 280-312 (336)
199 cd01965 Nitrogenase_MoFe_beta_ 25.8 7.2E+02 0.016 25.3 13.4 55 194-248 117-185 (428)
200 COG1104 NifS Cysteine sulfinat 25.7 2.4E+02 0.0052 28.7 7.2 25 371-395 333-369 (386)
201 TIGR00542 hxl6Piso_put hexulos 25.5 5.7E+02 0.012 24.1 11.4 18 264-281 97-114 (279)
202 COG0761 lytB 4-Hydroxy-3-methy 25.4 6.4E+02 0.014 24.6 11.6 45 332-379 228-278 (294)
203 PRK00507 deoxyribose-phosphate 25.0 4E+02 0.0087 24.8 8.2 74 107-192 132-208 (221)
204 TIGR00216 ispH_lytB (E)-4-hydr 25.0 3.7E+02 0.008 26.1 8.1 44 332-378 224-273 (280)
205 PF05368 NmrA: NmrA-like famil 24.9 3E+02 0.0065 25.0 7.4 68 217-286 38-106 (233)
206 PRK12928 lipoyl synthase; Prov 24.8 6.4E+02 0.014 24.4 12.5 104 171-278 85-207 (290)
207 CHL00076 chlB photochlorophyll 24.8 8.4E+02 0.018 25.7 12.7 91 194-284 117-248 (513)
208 PRK08123 histidinol-phosphatas 24.7 6.1E+02 0.013 24.1 15.2 22 112-133 20-41 (270)
209 TIGR00676 fadh2 5,10-methylene 24.7 6.2E+02 0.013 24.1 18.8 156 111-288 15-193 (272)
210 PRK15440 L-rhamnonate dehydrat 24.5 3.1E+02 0.0067 27.9 7.9 81 194-280 234-318 (394)
211 cd03314 MAL Methylaspartate am 24.4 5.3E+02 0.011 26.0 9.5 104 174-282 210-320 (369)
212 PRK09726 antitoxin HipB; Provi 24.3 85 0.0019 24.4 3.1 58 330-387 13-70 (88)
213 KOG0077 Vesicle coat complex C 24.2 1.9E+02 0.0041 26.0 5.4 48 209-257 7-54 (193)
214 PRK12360 4-hydroxy-3-methylbut 24.0 4.8E+02 0.01 25.3 8.7 44 332-378 225-274 (281)
215 PRK08248 O-acetylhomoserine am 24.0 8E+02 0.017 25.2 11.0 61 225-285 129-190 (431)
216 PRK07114 keto-hydroxyglutarate 23.9 4.4E+02 0.0096 24.6 8.2 65 109-183 25-89 (222)
217 PRK14459 ribosomal RNA large s 23.6 5.2E+02 0.011 26.2 9.2 91 195-285 240-359 (373)
218 PF00697 PRAI: N-(5'phosphorib 23.5 2.3E+02 0.0049 25.7 6.2 67 185-257 14-81 (197)
219 PRK08508 biotin synthase; Prov 23.1 6.7E+02 0.014 24.0 13.0 71 173-245 40-112 (279)
220 PRK08247 cystathionine gamma-s 22.8 4.6E+02 0.0099 26.1 8.8 63 225-287 116-179 (366)
221 PF02401 LYTB: LytB protein; 22.7 2.5E+02 0.0055 27.2 6.5 108 223-378 155-274 (281)
222 cd03329 MR_like_4 Mandelate ra 22.5 7.7E+02 0.017 24.5 14.6 152 109-281 143-299 (368)
223 PF01053 Cys_Met_Meta_PP: Cys/ 22.5 2.5E+02 0.0054 28.5 6.7 81 209-289 104-186 (386)
224 cd00405 PRAI Phosphoribosylant 22.3 2.2E+02 0.0047 25.7 5.8 41 193-238 73-113 (203)
225 PF02679 ComA: (2R)-phospho-3- 22.0 3.3E+02 0.0072 25.9 7.0 98 180-279 25-131 (244)
226 PF14387 DUF4418: Domain of un 22.0 26 0.00055 29.7 -0.4 15 3-17 31-45 (124)
227 PRK05301 pyrroloquinoline quin 21.9 6.1E+02 0.013 25.3 9.5 25 107-131 45-69 (378)
228 COG2089 SpsE Sialic acid synth 21.9 2.2E+02 0.0048 28.3 5.9 24 262-286 91-114 (347)
229 PF11242 DUF2774: Protein of u 21.8 1.2E+02 0.0025 22.4 3.0 21 334-354 16-36 (63)
230 PRK14456 ribosomal RNA large s 21.8 4.8E+02 0.01 26.3 8.6 78 208-285 260-353 (368)
231 PF01890 CbiG_C: Cobalamin syn 21.7 2E+02 0.0044 23.9 5.0 51 232-282 11-66 (121)
232 CHL00162 thiG thiamin biosynth 21.6 7.3E+02 0.016 23.8 9.5 73 172-245 80-158 (267)
233 COG0773 MurC UDP-N-acetylmuram 21.6 3.6E+02 0.0079 28.1 7.7 29 337-365 112-141 (459)
234 PF00682 HMGL-like: HMGL-like 21.6 6.3E+02 0.014 23.1 16.5 151 108-273 11-178 (237)
235 COG1564 THI80 Thiamine pyropho 21.6 1.9E+02 0.004 26.9 5.1 42 340-381 74-115 (212)
236 COG0820 Predicted Fe-S-cluster 21.5 3.8E+02 0.0083 26.9 7.6 88 197-285 216-330 (349)
237 TIGR01329 cysta_beta_ly_E cyst 21.3 5.7E+02 0.012 25.6 9.1 54 233-286 119-173 (378)
238 COG1149 MinD superfamily P-loo 21.1 1.6E+02 0.0035 28.4 4.7 86 187-285 157-250 (284)
239 PF01301 Glyco_hydro_35: Glyco 21.1 1.6E+02 0.0034 29.1 4.9 17 264-280 66-82 (319)
240 PRK09427 bifunctional indole-3 21.0 2.4E+02 0.0052 29.4 6.3 65 186-257 273-339 (454)
241 COG0052 RpsB Ribosomal protein 21.0 5.3E+02 0.012 24.6 8.0 94 176-281 74-186 (252)
242 PRK05718 keto-hydroxyglutarate 20.7 3.7E+02 0.0079 24.9 7.0 60 211-278 52-112 (212)
243 PRK06920 dnaE DNA polymerase I 20.6 8.7E+02 0.019 28.5 11.2 198 194-407 262-490 (1107)
244 TIGR00035 asp_race aspartate r 20.6 5.1E+02 0.011 23.9 8.1 65 174-239 15-90 (229)
245 PF01118 Semialdhyde_dh: Semia 20.6 1.4E+02 0.0031 24.5 3.9 27 109-135 75-101 (121)
246 COG2949 SanA Uncharacterized m 20.5 4.4E+02 0.0095 24.5 7.1 96 177-281 77-180 (235)
247 TIGR03849 arch_ComA phosphosul 20.5 4.5E+02 0.0097 24.9 7.5 98 180-279 12-118 (237)
248 PF10171 DUF2366: Uncharacteri 20.5 1.8E+02 0.0038 26.1 4.6 40 193-233 77-116 (173)
249 COG0065 LeuC 3-isopropylmalate 20.5 59 0.0013 33.0 1.7 67 191-277 26-92 (423)
250 PF04273 DUF442: Putative phos 20.5 3E+02 0.0065 22.6 5.7 53 234-287 16-69 (110)
251 KOG0023 Alcohol dehydrogenase, 20.4 4.1E+02 0.0088 26.5 7.3 142 87-278 181-325 (360)
252 PRK10550 tRNA-dihydrouridine s 20.4 8.2E+02 0.018 24.0 13.8 134 109-254 73-224 (312)
253 TIGR02666 moaA molybdenum cofa 20.1 8.2E+02 0.018 23.8 14.3 119 107-242 42-175 (334)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.5e-62 Score=471.81 Aligned_cols=317 Identities=24% Similarity=0.379 Sum_probs=273.6
Q ss_pred cceeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCC--ccHHHHHHHHHhhhcCCCcc
Q 014906 78 QSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPE 155 (416)
Q Consensus 78 ~~~~~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~ 155 (416)
...++++|++|++||++|||+|.|...++..+++++++++++|+++|+||||||++|| .+|+++|++|++.+..|. +
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~-~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD-K 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC-c
Confidence 3467789999999999999997554333347999999999999999999999999998 599999999999877676 7
Q ss_pred eEEEEEeecccC-CCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCC
Q 014906 156 FLDKVRGLTKWV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD 234 (416)
Q Consensus 156 ~~~~~~i~tk~~-~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~ 234 (416)
+++.+|++.... +.++..+...+...++.||++||++||||||+||+|+..+ +++++++|.+++++||||+||+|+++
T Consensus 90 vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiGlSe~s 168 (336)
T KOG1575|consen 90 VVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWGLSEWS 168 (336)
T ss_pred EEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEEeccCC
Confidence 777666654332 2356788899999999999999999999999999999998 99999999999999999999999999
Q ss_pred HHHHHHHHHcC-CCeeEecccccccccchhH-HHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHH
Q 014906 235 TERLRIILENG-IPVVSNQVQHSVVDMRPQQ-KMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ 312 (416)
Q Consensus 235 ~~~l~~~~~~g-~~~~~~Q~~~n~l~~~~~~-~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~ 312 (416)
.++++++.... +|+.++|++||+++|..++ ++++.|+++||++++||||++|+|++||+.. ...|....+...+...
T Consensus 169 a~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~-e~~~~~~~~~~~~~~~ 247 (336)
T KOG1575|consen 169 AEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLG-EDSRNGDKRFQFLGLS 247 (336)
T ss_pred HHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccc-cccccccccccccccc
Confidence 99999998853 6799999999999999555 6999999999999999999999999999876 3445555444333221
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHH
Q 014906 313 KYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNS 392 (416)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~ 392 (416)
. ++...++.+.+++++.++|+++|+|++|+||+|+++++.++++|||+++ ++|++||++|+.+.||++++.+
T Consensus 248 ~------~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~--ve~l~eni~Al~~~Lt~e~~~~ 319 (336)
T KOG1575|consen 248 P------QTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASK--IEQLKENIGALSVKLTPEEIKE 319 (336)
T ss_pred c------ccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCc--HHHHHHHHhhhhccCCHHHHHH
Confidence 1 1111156778889999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhhCCCCCC
Q 014906 393 IQEVTKKGKDLLG 405 (416)
Q Consensus 393 L~~~~~~~~~~~~ 405 (416)
|+++.++......
T Consensus 320 l~~~~~~~~~~~~ 332 (336)
T KOG1575|consen 320 LEEIIDKILGFGP 332 (336)
T ss_pred HHHhhccccCcCC
Confidence 9999988876554
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=4.4e-61 Score=470.90 Aligned_cols=303 Identities=23% Similarity=0.409 Sum_probs=260.4
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCC--ccHHHHHHHHHhhhcCCCcceEE
Q 014906 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (416)
Q Consensus 81 ~~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~ 158 (416)
++.+|+||++||+||||||.+++.+...+..++.++|++|+++||||||||++|| .||++||+||+..++ |+ ++++
T Consensus 3 ~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd-~vvI 80 (316)
T COG0667 3 YRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RD-KVVI 80 (316)
T ss_pred ceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CC-eEEE
Confidence 4568999999999999999998755555666888899999999999999999998 599999999998764 44 7777
Q ss_pred EEEeecccCC-CC---CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCC
Q 014906 159 KVRGLTKWVP-PP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD 234 (416)
Q Consensus 159 ~~~i~tk~~~-~~---~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~ 234 (416)
.+|++....+ .+ .++++++|+++++.||+|||+|||||||+||||...+ .++++++|.+|+++||||+||+||++
T Consensus 81 aTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 81 ATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 7776655431 11 5689999999999999999999999999999999777 89999999999999999999999999
Q ss_pred HHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCC-chHHH
Q 014906 235 TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT-PSLQK 313 (416)
Q Consensus 235 ~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~-~~~~~ 313 (416)
.+++.++.+...+++++|.+||+++|..+.+++++|+++||++++||||++|+|++||... ..+.+... +.+..
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~-----~~~~r~~~~~~~~~ 234 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG-----PEGSRASELPRFQR 234 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC-----cchhhccccccchh
Confidence 9999999875357999999999999888878999999999999999999999999999763 11222111 11111
Q ss_pred HHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHH
Q 014906 314 YKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSI 393 (416)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L 393 (416)
+ ..+....++..++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|++++++.|++++++.|
T Consensus 235 ~--------~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~--~~qL~en~~A~~~~L~~~~~~~l 304 (316)
T COG0667 235 E--------LTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASK--AEQLEENLAALDIKLSEEELAAL 304 (316)
T ss_pred h--------hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCC--HHHHHHHHHHhcCCCCHHHHHHH
Confidence 0 1145567778999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhhCC
Q 014906 394 QEVTKKGK 401 (416)
Q Consensus 394 ~~~~~~~~ 401 (416)
++......
T Consensus 305 ~~~~~~~~ 312 (316)
T COG0667 305 DEISAEEP 312 (316)
T ss_pred HHHhhhcc
Confidence 98876543
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.3e-58 Score=434.73 Aligned_cols=260 Identities=24% Similarity=0.345 Sum_probs=225.4
Q ss_pred ceeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEE
Q 014906 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLD 158 (416)
Q Consensus 79 ~~~~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~ 158 (416)
..+++.|. +||.||||||++++. +.+.++|.+|++.|+|+||||..||+ |+.+|++|++.+.+|.
T Consensus 5 ~~~l~~g~---~iP~iGlGt~~~~~~------~~~~~av~~Al~~Gyr~IDTA~~Ygn-E~~VG~aI~~s~v~Re----- 69 (280)
T COG0656 5 KVTLNNGV---EIPAIGLGTWQIGDD------EWAVRAVRAALELGYRLIDTAEIYGN-EEEVGEAIKESGVPRE----- 69 (280)
T ss_pred eeecCCCC---cccCcceEeeecCCc------hhHHHHHHHHHHhCcceEecHhHhcC-HHHHHHHHHhcCCCHH-----
Confidence 35555554 699999999999652 33899999999999999999999995 7788999998555554
Q ss_pred EEEeecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC-CccHHHHHHHHHHHHHcCcccEEEccCCCHHH
Q 014906 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTER 237 (416)
Q Consensus 159 ~~~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~-~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~ 237 (416)
++|++||.++. ..+++.+.+++++||++||+||||||+||||.+. .....|+|++|++++++||||+||||||+.++
T Consensus 70 elFittKvw~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~ 147 (280)
T COG0656 70 ELFITTKVWPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEH 147 (280)
T ss_pred HeEEEeecCCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHH
Confidence 55669998876 4588999999999999999999999999999753 11267999999999999999999999999999
Q ss_pred HHHHHHc-CCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCcc-CCCcccCCCCCCCCCCCCCCCchHHHHH
Q 014906 238 LRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL-LSEKFLDTNLSIPFAGPPLNTPSLQKYK 315 (416)
Q Consensus 238 l~~~~~~-g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~-L~~k~~~~~~~~p~~~~~~~~~~~~~~~ 315 (416)
++++++. ++.|++||++||++.++.+ ++++|+++||.+++||||++|. |..
T Consensus 148 L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~~~~gI~v~AysPL~~g~~l~~------------------------- 200 (280)
T COG0656 148 LEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFCQRHGIAVEAYSPLAKGGKLLD------------------------- 200 (280)
T ss_pred HHHHHHhcCCCCceEEEEeccCCCcHH--HHHHHHHcCCEEEEECCccccccccc-------------------------
Confidence 9999984 5789999999999876664 9999999999999999999653 221
Q ss_pred HhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHH
Q 014906 316 RMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 395 (416)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~ 395 (416)
. +.+++||++||.|++|++|+|+++++ ..+||.+++ ++|++||++++++.||+|||+.|++
T Consensus 201 -------------~--~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~--~~ri~eN~~~~~f~Ls~ed~~~i~~ 261 (280)
T COG0656 201 -------------N--PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTT--PERIRENLAAFDFELSEEDMAAIDA 261 (280)
T ss_pred -------------C--hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCC--HHHHHHHHhhhcCCCCHHHHHHHHh
Confidence 0 68999999999999999999999999 346777777 9999999999999999999999999
Q ss_pred HHhhCC
Q 014906 396 VTKKGK 401 (416)
Q Consensus 396 ~~~~~~ 401 (416)
+.....
T Consensus 262 l~~~~~ 267 (280)
T COG0656 262 LDRGYG 267 (280)
T ss_pred hccccC
Confidence 988763
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.3e-56 Score=439.67 Aligned_cols=302 Identities=19% Similarity=0.295 Sum_probs=242.5
Q ss_pred eecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCC--ccHHHHHHHHHhhhcCCCcceEEE
Q 014906 82 VSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLDK 159 (416)
Q Consensus 82 ~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~~ 159 (416)
+++|+||++||+||||||.+.+ +..+.+++.++|+.|+++|||+||||++|| .||++||++|+..+..|. ++++.
T Consensus 2 r~lg~tg~~vs~lglGt~~~~g--~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~-~~~ia 78 (317)
T TIGR01293 2 RNLGKSGLRVSCLGLGTWVTFG--GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRS-SYVIT 78 (317)
T ss_pred cccCCCCCeecceeecCCccCC--CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcc-cEEEE
Confidence 4589999999999999997532 135788999999999999999999999997 599999999986432343 56664
Q ss_pred EEeeccc-CCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHH
Q 014906 160 VRGLTKW-VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 238 (416)
Q Consensus 160 ~~i~tk~-~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l 238 (416)
+|+.... .+...+++++.+++++++||+|||+||||+|++|||+...+ .+++|++|++|+++||||+||||||+.+++
T Consensus 79 TK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 79 TKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred eeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 4442211 01123568999999999999999999999999999988666 889999999999999999999999999998
Q ss_pred HHHHH----cC-CCeeEecccccccccch-hHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHH
Q 014906 239 RIILE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ 312 (416)
Q Consensus 239 ~~~~~----~g-~~~~~~Q~~~n~l~~~~-~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~ 312 (416)
+++.. .+ ++++++|++||++++.. +.+++++|+++||++++|+||++|+|+++|... +|... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~---~~~~~-~~~~~~-- 231 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG---IPPYS-RATLKG-- 231 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC---CCCcc-cccccc--
Confidence 87653 22 57899999999998874 668999999999999999999999999998653 12211 111000
Q ss_pred HHHHhhhhcC--CchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcC--CCCHH
Q 014906 313 KYKRMVDAWG--GWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDED 388 (416)
Q Consensus 313 ~~~~~~~~~~--~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~--~Lt~e 388 (416)
++++...+. ........++.|+++|+++|+|++|+||+|++++|.|+++|+|+++ ++|+++|++++++ +||++
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~~Ls~e 308 (317)
T TIGR01293 232 -YQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASS--AEQLMENLGSLQVLPKLSSS 308 (317)
T ss_pred -cchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHHHhhccCCCCHH
Confidence 000000000 0012345668899999999999999999999999999999999999 9999999999987 99999
Q ss_pred HHHHHHHH
Q 014906 389 DVNSIQEV 396 (416)
Q Consensus 389 e~~~L~~~ 396 (416)
++++|+++
T Consensus 309 ~~~~l~~~ 316 (317)
T TIGR01293 309 IIHEIDSI 316 (317)
T ss_pred HHHHHHhh
Confidence 99999975
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1e-55 Score=439.69 Aligned_cols=307 Identities=21% Similarity=0.333 Sum_probs=245.1
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCc----cHHHHHHHHHhhh-cCCCcc
Q 014906 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP----AEDLYGIFINRVR-RERPPE 155 (416)
Q Consensus 81 ~~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~----sE~~lG~al~~~~-r~r~~~ 155 (416)
++++|+||++||.||||||+..+. ..+.+++.++|++|++.|||+||||+.||+ +|++||++|++.. ..|+ +
T Consensus 15 ~r~lg~tg~~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd-~ 91 (346)
T PRK09912 15 YRYCGKSGLRLPALSLGLWHNFGH--VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRD-E 91 (346)
T ss_pred eeecCCCCcccccccccCccccCC--CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCC-e
Confidence 466999999999999999973221 235678899999999999999999999983 8999999998631 1233 6
Q ss_pred eEEEEEeecccCCC--CCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC
Q 014906 156 FLDKVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 233 (416)
Q Consensus 156 ~~~~~~i~tk~~~~--~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~ 233 (416)
+++.+|++...++. +...+++.+++++++||+|||+||||||++|||+...+ .+++|++|++|+++||||+||||||
T Consensus 92 ~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~ 170 (346)
T PRK09912 92 LIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYVGISSY 170 (346)
T ss_pred EEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCC
Confidence 66666654322222 22468999999999999999999999999999987666 8999999999999999999999999
Q ss_pred CHHHHHHHHH----cCCCeeEecccccccccchh-HHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCC
Q 014906 234 DTERLRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT 308 (416)
Q Consensus 234 ~~~~l~~~~~----~g~~~~~~Q~~~n~l~~~~~-~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~ 308 (416)
++++++++.+ .+++++++|++||++++..+ .+++++|+++||++++|+||++|+|+++|.... |. +.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~---~~-~~~~~~ 246 (346)
T PRK09912 171 SPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGI---PQ-DSRMHR 246 (346)
T ss_pred CHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCC---CC-Cccccc
Confidence 9999886554 35688999999999998755 479999999999999999999999999885532 21 111100
Q ss_pred chHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhh-cCCCCH
Q 014906 309 PSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF-MLSLDE 387 (416)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~-~~~Lt~ 387 (416)
+. ..++++...+. .....++++.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++||++|++++ .++|++
T Consensus 247 ~~-~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~--~~ql~en~~a~~~~~L~~ 322 (346)
T PRK09912 247 EG-NKVRGLTPKML-TEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASR--AEQLEENVQALNNLTFST 322 (346)
T ss_pred cc-cchhhhchhhc-cHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCC--HHHHHHHHhhhcCCCCCH
Confidence 00 00000000000 022345668899999999999999999999999999999999999 99999999998 589999
Q ss_pred HHHHHHHHHHhh
Q 014906 388 DDVNSIQEVTKK 399 (416)
Q Consensus 388 ee~~~L~~~~~~ 399 (416)
+|+++|+++..+
T Consensus 323 e~~~~l~~~~~~ 334 (346)
T PRK09912 323 EELAQIDQHIAD 334 (346)
T ss_pred HHHHHHHHhhCc
Confidence 999999998855
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=7.5e-55 Score=433.84 Aligned_cols=296 Identities=23% Similarity=0.360 Sum_probs=241.6
Q ss_pred eecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCC---------ccHHHHHHHHHhhhcCC
Q 014906 82 VSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG---------PAEDLYGIFINRVRRER 152 (416)
Q Consensus 82 ~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG---------~sE~~lG~al~~~~r~r 152 (416)
.++|+||++||.||||||.+|+ ..+.+++.++|+.|++.||||||||+.|| .+|.++|++|+..+ .|
T Consensus 4 r~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~-~R 79 (346)
T PRK10625 4 HRIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG-SR 79 (346)
T ss_pred eecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC-Cc
Confidence 5689999999999999999864 34678999999999999999999999995 48999999998532 23
Q ss_pred CcceEEEEEeecccCCC----------CCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC----------------C
Q 014906 153 PPEFLDKVRGLTKWVPP----------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------------N 206 (416)
Q Consensus 153 ~~~~~~~~~i~tk~~~~----------~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~----------------~ 206 (416)
. ++++ .||++.. ..+++++.+++++++||+|||+||||||++|||+.. .
T Consensus 80 ~-~v~i----~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~ 154 (346)
T PRK10625 80 E-KLII----ASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPA 154 (346)
T ss_pred c-eEEE----EcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCC
Confidence 3 5555 5554210 124689999999999999999999999999999642 1
Q ss_pred ccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cCC-CeeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 207 PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGI-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 207 ~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~----~g~-~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
..++++|++|++|+++||||+||||||+.+++++++. .++ .+.++|++||++++..+.+++++|+++||++++|+
T Consensus 155 ~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~s 234 (346)
T PRK10625 155 VSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYS 234 (346)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEec
Confidence 1378999999999999999999999999999877653 233 48899999999998877789999999999999999
Q ss_pred cccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCee
Q 014906 282 TVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAG 361 (416)
Q Consensus 282 pL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~ 361 (416)
||++|+|+++|.... .| .+.+... +..+.+ + ......+.++.++++|+++|+|++|+||+|++++|.|++
T Consensus 235 pL~~G~Ltg~~~~~~--~~-~~~~~~~--~~~~~~----~-~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~ 304 (346)
T PRK10625 235 CLAFGTLTGKYLNGA--KP-AGARNTL--FSRFTR----Y-SGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVAS 304 (346)
T ss_pred cccCeeccCCCCCCC--CC-CCccccc--cccccc----c-cchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCee
Confidence 999999999875432 11 1111110 000100 0 112334567899999999999999999999999999999
Q ss_pred EeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHHHHh
Q 014906 362 SMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 398 (416)
Q Consensus 362 ~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~~~~ 398 (416)
+|+|+++ ++||++|+++++++|+++|++.|+++..
T Consensus 305 ~I~G~~~--~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 305 TLLGATT--MEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred EEeCCCC--HHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999999875
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.4e-54 Score=424.83 Aligned_cols=286 Identities=19% Similarity=0.315 Sum_probs=238.7
Q ss_pred eecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCc--cHHHHHHHHHhhhcCCCcceEEE
Q 014906 82 VSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLDK 159 (416)
Q Consensus 82 ~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~~ 159 (416)
++||+||++||.||||||++++.|+..+.+++.++|++|++.|||+||||+.||. +|.++|++|++.+..|. +++
T Consensus 2 r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~-~v~-- 78 (314)
T PLN02587 2 RELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPRE-KYV-- 78 (314)
T ss_pred CcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcc-eEE--
Confidence 3589999999999999999987787788999999999999999999999999976 99999999987543344 444
Q ss_pred EEeecccCC--CCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCc--cHHHHHHHHHHHHHcCcccEEEccCCCH
Q 014906 160 VRGLTKWVP--PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFDT 235 (416)
Q Consensus 160 ~~i~tk~~~--~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~--~~~e~~~aL~~l~~~GkIr~iGvSn~~~ 235 (416)
+.||+.+ ...+++++.+++++++||+|||+||||+|+||||+.... ..+++|++|++|+++||||+||||||++
T Consensus 79 --I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 156 (314)
T PLN02587 79 --VSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPL 156 (314)
T ss_pred --EEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCH
Confidence 4666542 223578999999999999999999999999999975321 2578999999999999999999999999
Q ss_pred HHHHHHHHc---C-CCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchH
Q 014906 236 ERLRIILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSL 311 (416)
Q Consensus 236 ~~l~~~~~~---g-~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~ 311 (416)
++++.+.+. + +.+..+|+.||++++.. .+++++|+++||++++|+||++|+|++++... + ++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~---~--------~~~~ 224 (314)
T PLN02587 157 AIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE---W--------HPAP 224 (314)
T ss_pred HHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC---C--------CCCC
Confidence 988776652 1 34556789999876543 48999999999999999999999999864210 0 0000
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhc----CCCCH
Q 014906 312 QKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM----LSLDE 387 (416)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~----~~Lt~ 387 (416)
.....+.+.++++|+++|+|++|+||+|++++|.|+++|+|+++ ++|+++|++++. .+|++
T Consensus 225 -------------~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~--~~~l~~nl~a~~~~~~~~l~~ 289 (314)
T PLN02587 225 -------------PELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNS--VQQVEENVAAATELETSGIDE 289 (314)
T ss_pred -------------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCC--HHHHHHHHHHHhhcccCCCCH
Confidence 22345567889999999999999999999999999999999999 999999999975 37999
Q ss_pred HHHHHHHHHHhh
Q 014906 388 DDVNSIQEVTKK 399 (416)
Q Consensus 388 ee~~~L~~~~~~ 399 (416)
+++++|+++...
T Consensus 290 ~~~~~l~~~~~~ 301 (314)
T PLN02587 290 ELLSEVEAILAP 301 (314)
T ss_pred HHHHHHHHhhcc
Confidence 999999998863
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.1e-52 Score=407.04 Aligned_cols=277 Identities=31% Similarity=0.585 Sum_probs=241.2
Q ss_pred eecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCc--cHHHHHHHHHhhhcCCCcceEEE
Q 014906 82 VSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLDK 159 (416)
Q Consensus 82 ~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~~ 159 (416)
.++|+||++||.||||+|.++..| .+.+++.++++.|++.|||+||||+.||. +|+.+|++|+..+ .|. ++++
T Consensus 2 r~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~-~R~-~~~i- 76 (285)
T cd06660 2 RTLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG-PRE-EVFI- 76 (285)
T ss_pred cccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC-CcC-cEEE-
Confidence 358999999999999999987655 57899999999999999999999999987 9999999999865 233 5555
Q ss_pred EEeecccCCCC---CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHH
Q 014906 160 VRGLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 236 (416)
Q Consensus 160 ~~i~tk~~~~~---~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~ 236 (416)
.||+.+.. .+++++.+++++++||++||+||||+|+||||+.......++|++|++++++|+||+||||||+++
T Consensus 77 ---~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 77 ---ATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred ---EeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 55544332 347899999999999999999999999999998765558999999999999999999999999999
Q ss_pred HHHHHHHcC-CCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHH
Q 014906 237 RLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYK 315 (416)
Q Consensus 237 ~l~~~~~~g-~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~ 315 (416)
.+.++++.. .+|+++|++||++++..+.+++++|+++||++++|+||++|.|++++.... + .+.
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~--------~--~~~----- 218 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGA--------P--PPE----- 218 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCC--------C--CCh-----
Confidence 999998752 689999999999998877789999999999999999999999987643322 0 000
Q ss_pred HhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHH
Q 014906 316 RMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 395 (416)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~ 395 (416)
......+..++.++++|++|+||+|++++|.++++|+|+++ ++|+++|+++..++|++++++.|++
T Consensus 219 ------------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 219 ------------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASS--PERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred ------------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCC--HHHHHHHHhhccCCCCHHHHHHHhh
Confidence 01337889999999999999999999999999999999999 9999999999999999999999986
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=3.3e-52 Score=400.53 Aligned_cols=251 Identities=18% Similarity=0.281 Sum_probs=216.4
Q ss_pred ccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCC
Q 014906 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP 169 (416)
Q Consensus 90 ~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~ 169 (416)
+||.||||||+++ .+++.+++++|++.|||+||||+.|| +|+.+|++|++.+..|. ++++ .||.++.
T Consensus 2 ~vs~lglGt~~~~-------~~~~~~~i~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-~v~i----~TK~~~~ 68 (267)
T PRK11172 2 SIPAFGLGTFRLK-------DQVVIDSVKTALELGYRAIDTAQIYD-NEAAVGQAIAESGVPRD-ELFI----TTKIWID 68 (267)
T ss_pred CCCCEeeEccccC-------hHHHHHHHHHHHHcCCCEEEccchhC-CHHHHHHHHHHcCCChh-HeEE----EEEeCCC
Confidence 6999999999874 36799999999999999999999999 49999999986432333 4444 6665432
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCC-ccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CC-
Q 014906 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI- 246 (416)
Q Consensus 170 ~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~-~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~-g~- 246 (416)
..+++.+++++++||+|||+||||+|++|||++.. ....++|++|++|+++||||+||||||+.++++++++. +.
T Consensus 69 --~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~ 146 (267)
T PRK11172 69 --NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAE 146 (267)
T ss_pred --CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCC
Confidence 45889999999999999999999999999997631 23788999999999999999999999999999998873 33
Q ss_pred CeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhhhcCCchh
Q 014906 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQ 326 (416)
Q Consensus 247 ~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (416)
+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 147 ~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~----------------------------------- 189 (267)
T PRK11172 147 NIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD----------------------------------- 189 (267)
T ss_pred CCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-----------------------------------
Confidence 689999999998763 5899999999999999999999854220
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHHHHhhCC
Q 014906 327 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 401 (416)
Q Consensus 327 ~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~~~~~~~ 401 (416)
+.++++|+++|+|++|+||+|+++++. ++|+|+++ ++|+++|+++++++||++|+++|+++..+.+
T Consensus 190 -----~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~--~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~~ 255 (267)
T PRK11172 190 -----PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTK--RENLASNLLAQDLQLDAEDMAAIAALDRNGR 255 (267)
T ss_pred -----HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCC--HHHHHHHHhhcCCCcCHHHHHHHhhhccCCc
Confidence 468889999999999999999999973 48999999 9999999999999999999999999986654
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.5e-52 Score=405.65 Aligned_cols=279 Identities=28% Similarity=0.500 Sum_probs=229.8
Q ss_pred ceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCC--CccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCC
Q 014906 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPP 170 (416)
Q Consensus 93 ~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~ 170 (416)
+||||||++++. ..+++++.++|+.|++.|||+||||+.| |.+|+.||++|++.+..|+ ++++.+|+ .......
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~-~~~i~tK~-~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRD-DIFISTKV-YGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGG-GSEEEEEE-ESSSSTG
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccc-cccccccc-ccccccc
Confidence 589999999653 6789999999999999999999999999 7799999999998333333 67776666 1112234
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCee
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVV 249 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~-g~~~~ 249 (416)
..++++.+++++++||++||+||||+|+||||+.......++|++|++|+++|+||+||||||+++.++.+... .++|+
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~ 156 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPD 156 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ES
T ss_pred ccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccc
Confidence 56799999999999999999999999999999987666899999999999999999999999999999999554 46899
Q ss_pred EecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhhhcCCchhHHH
Q 014906 250 SNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQV 329 (416)
Q Consensus 250 ~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (416)
++|++||++++..+++++++|+++||++++|+||++|+|++++.......+.... ...+.
T Consensus 157 ~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~--------------------~~~~~ 216 (283)
T PF00248_consen 157 VVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL--------------------RDAQE 216 (283)
T ss_dssp EEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS--------------------STHGG
T ss_pred ccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc--------------------chhhh
Confidence 9999999997788889999999999999999999999999987664421111100 01234
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHHHH
Q 014906 330 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 397 (416)
Q Consensus 330 ~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~~~ 397 (416)
..+.+.++++++|+|++|+||+|+++++.+.++|+|+++ ++|+++|+++++++||++|+++|+++.
T Consensus 217 ~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~--~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 217 LADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASS--PEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp GHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SS--HHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCC--HHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 448899999999999999999999999999999999999 999999999999999999999999864
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.3e-52 Score=395.76 Aligned_cols=267 Identities=19% Similarity=0.346 Sum_probs=225.0
Q ss_pred ceeeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEE
Q 014906 79 SITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLD 158 (416)
Q Consensus 79 ~~~~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~ 158 (416)
.++++.| .+||.||||||+. +++++.++|+.|++.||+|||||..|||.++ +|++|++.-.+.. .-+.
T Consensus 6 ~~~Ln~G---~~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~e-vG~aik~~i~~~~-v~Re 73 (300)
T KOG1577|consen 6 TVKLNNG---FKMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYGNEKE-VGEAIKELLAEGG-VKRE 73 (300)
T ss_pred eEeccCC---CccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhCChHH-HHHHHHHHhhhCC-cchh
Confidence 3677777 5999999999984 4678999999999999999999999999554 7999996432221 2223
Q ss_pred EEEeecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC---------------CccHHHHHHHHHHHHHcC
Q 014906 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEG 223 (416)
Q Consensus 159 ~~~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~---------------~~~~~e~~~aL~~l~~~G 223 (416)
++|++||+|+. .+.++.++.++++||++||+||+|||++|||-.. ..++.++|++|+++++.|
T Consensus 74 diFiTSKlw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~G 151 (300)
T KOG1577|consen 74 DIFITSKLWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEG 151 (300)
T ss_pred hheeeeccCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcC
Confidence 67779999876 3589999999999999999999999999998543 123778999999999999
Q ss_pred cccEEEccCCCHHHHHHHHHc-CCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCC
Q 014906 224 KIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFA 302 (416)
Q Consensus 224 kIr~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~ 302 (416)
+||+||||||+..++++++.. .++|.+||+++|+ ...+.+++++|+++||.|.|||||+++.- ++
T Consensus 152 l~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP--~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~----------- 217 (300)
T KOG1577|consen 152 LVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHP--YLQQKKLVEFCKSKGIVVTAYSPLGSPGR-GS----------- 217 (300)
T ss_pred CceEeeeecCCHHHHHHHHhcCCCCCccceeeccC--CcChHHHHHHHhhCCcEEEEecCCCCCCC-cc-----------
Confidence 999999999999999999985 5889999999999 45667899999999999999999997631 00
Q ss_pred CCCCCCchHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhc
Q 014906 303 GPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 382 (416)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~ 382 (416)
..+.+ +.+++||++||+|++|++|||+++++.+ +||-.++ ++|++||+..++
T Consensus 218 ----------------------~ll~~--~~l~~iA~K~~kt~aQIlLrw~~q~g~~--vipKS~~--~~Ri~eN~~vfd 269 (300)
T KOG1577|consen 218 ----------------------DLLED--PVLKEIAKKYNKTPAQILLRWALQRGVS--VIPKSSN--PERIKENFKVFD 269 (300)
T ss_pred ----------------------ccccC--HHHHHHHHHhCCCHHHHHHHHHHhCCcE--EEeccCC--HHHHHHHHhhcc
Confidence 01111 7899999999999999999999999854 5666666 999999999999
Q ss_pred CCCCHHHHHHHHHHHhhCC
Q 014906 383 LSLDEDDVNSIQEVTKKGK 401 (416)
Q Consensus 383 ~~Lt~ee~~~L~~~~~~~~ 401 (416)
+.||+||++.|+......|
T Consensus 270 f~Lt~ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 270 FELTEEDMKKLDSLNSNER 288 (300)
T ss_pred ccCCHHHHHHHhhccccce
Confidence 9999999999997766554
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.5e-52 Score=404.73 Aligned_cols=268 Identities=19% Similarity=0.174 Sum_probs=222.2
Q ss_pred ccccCceeeccccCCCC-------CCCCCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEE
Q 014906 88 SLEICRVLNGMWQTSGG-------WGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (416)
Q Consensus 88 gl~vs~lglGt~~~~~~-------~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~ 160 (416)
+++||+||||||++|+. |+.++++++.++|+.|++.||||||||+.||.||+++|++|++ +.+. . +
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~--~~~~-~----~ 74 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR--PVPF-R----V 74 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc--CCce-E----e
Confidence 46899999999999753 5778999999999999999999999999999999999999964 1111 2 3
Q ss_pred EeecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC-CccHHHHHHHHHHHHHcCcccEEEccCCCHHHHH
Q 014906 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 239 (416)
Q Consensus 161 ~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~-~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~ 239 (416)
.+.||. + +.+++.+++++++||+|||+||||+|++|||+.. .+..+++|++|++|+++||||+||||||+++++.
T Consensus 75 ~i~tk~-~---~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~ 150 (292)
T PRK14863 75 TLSTVR-A---DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPV 150 (292)
T ss_pred eccccc-c---cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHH
Confidence 345553 1 3478999999999999999999999999999753 2323678999999999999999999999999998
Q ss_pred HHHHcCCCeeEecccccccccchh-HHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhh
Q 014906 240 IILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMV 318 (416)
Q Consensus 240 ~~~~~g~~~~~~Q~~~n~l~~~~~-~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~ 318 (416)
.+... ++|+++|++||++++..+ .+++++|+++||++++|+||++|+|++.... .+ . .+
T Consensus 151 ~~~~~-~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~----~~--------~---~~---- 210 (292)
T PRK14863 151 GVARR-FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDR----VP--------A---QL---- 210 (292)
T ss_pred HHHhc-CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCccc----Cc--------c---ch----
Confidence 87654 589999999999998765 4699999999999999999999999652100 00 0 00
Q ss_pred hhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHH
Q 014906 319 DAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQ 394 (416)
Q Consensus 319 ~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~ 394 (416)
......+..+++++.++++|++|+||+|++++|.|+++|+|+++ ++|+++|+++...+++++.+++|.
T Consensus 211 ------~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~--~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 211 ------KGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNS--AAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred ------hhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCC--HHHHHHHHHHHhcCCCccchhhcc
Confidence 01123346677788888999999999999999999999999999 999999999998899998887765
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.4e-51 Score=395.65 Aligned_cols=269 Identities=17% Similarity=0.274 Sum_probs=223.3
Q ss_pred eeecCCCccccCceeeccccCCC--CCCC-CCHHHHHHHHHHHHHcCCCEEECCCCCCc--cHHHHHHHHHhhhcCCCcc
Q 014906 81 TVSNGNDSLEICRVLNGMWQTSG--GWGR-IDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPE 155 (416)
Q Consensus 81 ~~~~G~tgl~vs~lglGt~~~~~--~~~~-~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~ 155 (416)
++.++ |++||+||||||++++ .||. .+++++.++|+.|++.|||+||||+.||+ +|++||++++. .|+ +
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~---~ 82 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPD---D 82 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCC---e
Confidence 44454 6899999999999975 3664 46789999999999999999999999976 78999999964 233 5
Q ss_pred eEEEEEeecccCC---CCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCC----CCccHHHHHHHHHHHHHcCcccEE
Q 014906 156 FLDKVRGLTKWVP---PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIKTV 228 (416)
Q Consensus 156 ~~~~~~i~tk~~~---~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~----~~~~~~e~~~aL~~l~~~GkIr~i 228 (416)
+++.+|+...... ...+.+++.+++++++||+|||+||||+|++||++. ......++|++|++|+++||||+|
T Consensus 83 ~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~i 162 (290)
T PRK10376 83 LTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHI 162 (290)
T ss_pred EEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEE
Confidence 6665554321110 123568999999999999999999999999988521 112378899999999999999999
Q ss_pred EccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCC
Q 014906 229 ALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNT 308 (416)
Q Consensus 229 GvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~ 308 (416)
|||||++++++++.+.. +++++|++||++++. .++++++|+++||++++|+||+++. +
T Consensus 163 GvSn~~~~~l~~~~~~~-~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~~------------~-------- 220 (290)
T PRK10376 163 GLSNVTPTQVAEARKIA-EIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGFT------------P-------- 220 (290)
T ss_pred EecCCCHHHHHHHHhhC-CeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCCC------------h--------
Confidence 99999999999988753 789999999999865 3579999999999999999997431 0
Q ss_pred chHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHH
Q 014906 309 PSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDED 388 (416)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~e 388 (416)
.+ .+.++++|+++|+|++|+||+|+++++.++++|+|+++ ++|+++|+++++++|+++
T Consensus 221 ------------------~~--~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~--~~~l~en~~a~~~~L~~e 278 (290)
T PRK10376 221 ------------------LQ--SSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSS--VAHLRENLAAAELVLSEE 278 (290)
T ss_pred ------------------hh--hHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCC--HHHHHHHHhhccCCCCHH
Confidence 00 16788999999999999999999998767789999999 999999999999999999
Q ss_pred HHHHHHHHHhh
Q 014906 389 DVNSIQEVTKK 399 (416)
Q Consensus 389 e~~~L~~~~~~ 399 (416)
+++.|+++.+.
T Consensus 279 ~~~~l~~~~~~ 289 (290)
T PRK10376 279 VLAELDGIARE 289 (290)
T ss_pred HHHHHHHHHhc
Confidence 99999998653
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.1e-50 Score=391.29 Aligned_cols=255 Identities=19% Similarity=0.353 Sum_probs=218.3
Q ss_pred CCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecc
Q 014906 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (416)
Q Consensus 86 ~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk 165 (416)
++|+.||.||||||++ +.+++.++|++|++.|||+||||+.|| +|+.+|++|+..+.+|. ++++ .||
T Consensus 10 ~~g~~v~~lglG~~~~-------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-~~~i----~tK 76 (275)
T PRK11565 10 QDGNVMPQLGLGVWQA-------SNEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVARE-ELFI----TTK 76 (275)
T ss_pred CCCCccCCcceECccC-------CHHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCHH-HEEE----EEE
Confidence 5678999999999976 357899999999999999999999999 58889999986543333 4544 555
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH-c
Q 014906 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-N 244 (416)
Q Consensus 166 ~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~-~ 244 (416)
.++. +++.+++++++||+|||+||||+|+||||+...+...++|++|++|+++||||+||||||+++++++++. .
T Consensus 77 ~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 152 (275)
T PRK11565 77 LWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDET 152 (275)
T ss_pred ecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhC
Confidence 5432 5789999999999999999999999999987544478999999999999999999999999999999875 4
Q ss_pred CCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhhhcCCc
Q 014906 245 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW 324 (416)
Q Consensus 245 g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 324 (416)
++++.++|++||++.+. .+++++|+++||.+++|+||++|.. . ...
T Consensus 153 ~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~--------------~~~----------------- 198 (275)
T PRK11565 153 GVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G--------------VFD----------------- 198 (275)
T ss_pred CCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c--------------ccc-----------------
Confidence 57789999999998653 5799999999999999999997630 0 000
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHHHHhhCC
Q 014906 325 SQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 401 (416)
Q Consensus 325 ~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~~~~~~~ 401 (416)
.+.|+++|+++|+|++|+||+|+++++.+ +|||+++ ++|+++|+++++++|+++|+++|+++....+
T Consensus 199 ------~~~l~~ia~~~g~s~aq~aL~w~l~~~~~--~I~g~~~--~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~~ 265 (275)
T PRK11565 199 ------QKVIRDLADKYGKTPAQIVIRWHLDSGLV--VIPKSVT--PSRIAENFDVFDFRLDKDELGEIAKLDQGKR 265 (275)
T ss_pred ------CHHHHHHHHHhCCCHHHHHHHHHHcCCCE--eeCCCCC--HHHHHHHHhccCCCcCHHHHHHHHhhcccCC
Confidence 05788999999999999999999999743 7999999 9999999999999999999999999976543
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.2e-46 Score=340.77 Aligned_cols=276 Identities=24% Similarity=0.373 Sum_probs=239.2
Q ss_pred eeecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCc--cHHHHHHHHHhhhcCCCcceEE
Q 014906 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (416)
Q Consensus 81 ~~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (416)
++.+|+.|+++|+|.+|+|++. .|+ .+.++....+++|++.|||+||-|+.||. .|+++|.+|+-.|.-|. .+
T Consensus 3 rI~l~~~~~e~Sriv~G~wRl~-d~~-~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRe-ki-- 77 (298)
T COG4989 3 RITLAPDGLEFSRIVLGYWRLN-DWN-MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLRE-KI-- 77 (298)
T ss_pred eEEecCCCccHHHHHHHHHhhh-hcc-CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhh-he--
Confidence 5668899999999999999995 454 35689999999999999999999999986 79999999987654443 33
Q ss_pred EEEeecccC----C------CCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEE
Q 014906 159 KVRGLTKWV----P------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (416)
Q Consensus 159 ~~~i~tk~~----~------~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~i 228 (416)
.+.||.+ . ..++.+.++|..++|+||+||++||+|+++||.||+-.+ .+|+.+||..|++.||||+.
T Consensus 78 --eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~f 154 (298)
T COG4989 78 --EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHF 154 (298)
T ss_pred --EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeee
Confidence 3344421 1 246889999999999999999999999999999999776 89999999999999999999
Q ss_pred EccCCCHHHHHHHHHc-CCCeeEecccccccccch-hHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCC
Q 014906 229 ALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPL 306 (416)
Q Consensus 229 GvSn~~~~~l~~~~~~-g~~~~~~Q~~~n~l~~~~-~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~ 306 (416)
|||||+|.+++-+.+. ..++..||++.|+++... .++.+++|+++.|.+++||||++|-++..
T Consensus 155 GVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g--------------- 219 (298)
T COG4989 155 GVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG--------------- 219 (298)
T ss_pred ecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC---------------
Confidence 9999999999988874 346899999999986543 35799999999999999999999865431
Q ss_pred CCchHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCC
Q 014906 307 NTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSL 385 (416)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g-~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~L 385 (416)
.+.++.+..+|..||.++| .|.++++++|++.+|.-.-+|+|+.+ ++++++.++++++.|
T Consensus 220 -----------------~~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~--~eRi~~a~~Al~~~L 280 (298)
T COG4989 220 -----------------DDKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGN--LERIRAAIKALSLTL 280 (298)
T ss_pred -----------------CcchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCC--HHHHHHHHHHhhccc
Confidence 1456777899999999999 69999999999999998889999988 999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 014906 386 DEDDVNSIQEVTK 398 (416)
Q Consensus 386 t~ee~~~L~~~~~ 398 (416)
|.+++-+|..+..
T Consensus 281 tRqqWf~Iy~Aa~ 293 (298)
T COG4989 281 TRQQWFEIYTAAI 293 (298)
T ss_pred cHHHHHHHHHHhc
Confidence 9999999998763
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2e-45 Score=351.79 Aligned_cols=275 Identities=21% Similarity=0.263 Sum_probs=235.2
Q ss_pred eecCCCccccCceeeccccCCCCC-CCCCHHHHHHHHHHHHHcCCCEEECCCCC--CccHHHHHHHHHhhhcCCCcceEE
Q 014906 82 VSNGNDSLEICRVLNGMWQTSGGW-GRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEFLD 158 (416)
Q Consensus 82 ~~~G~tgl~vs~lglGt~~~~~~~-~~~~~~~~~~~l~~Al~~Gin~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~~~ 158 (416)
+++|++|.++|.+|||+|++...| +.+|.+.+.++|++|++.||||||||..| |.||..||++|++..|+
T Consensus 4 r~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re------- 76 (391)
T COG1453 4 RKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE------- 76 (391)
T ss_pred hhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc-------
Confidence 458999999999999999996555 56889999999999999999999999999 99999999999986655
Q ss_pred EEEeecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCcc---HHHHHHHHHHHHHcCcccEEEccCCCH
Q 014906 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHLTDLKEEGKIKTVALTNFDT 235 (416)
Q Consensus 159 ~~~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~---~~e~~~aL~~l~~~GkIr~iGvSn~~~ 235 (416)
+++++||+...+ --+++.+++-++++|++||+||+|+|+||.......+ -..+++.++++|++||||++|+|.|++
T Consensus 77 kv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs 155 (391)
T COG1453 77 KVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGS 155 (391)
T ss_pred eEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCC
Confidence 677788875332 2388999999999999999999999999998653221 113799999999999999999999965
Q ss_pred -HHHHHHHHcCCCeeEecccccccccchhH--HHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHH
Q 014906 236 -ERLRIILENGIPVVSNQVQHSVVDMRPQQ--KMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQ 312 (416)
Q Consensus 236 -~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~--~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~ 312 (416)
+.+.+++.. .+++++|++||++|...+. +.+++|.++|++|+.++|+.+|.|..+ .|
T Consensus 156 ~e~~~~iv~a-~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----------------vP--- 215 (391)
T COG1453 156 TEVFKEIVDA-YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----------------VP--- 215 (391)
T ss_pred HHHHHHHHhc-CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC----------------CC---
Confidence 677777776 5799999999999987663 889999999999999999999977542 11
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcC---CCCH
Q 014906 313 KYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML---SLDE 387 (416)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g--~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~---~Lt~ 387 (416)
++++++.++.+ .||+.+|+||++++|.|+++++|+++ ++|++||+..++. +||+
T Consensus 216 -------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~--~~~l~enLk~~~~~~p~lte 274 (391)
T COG1453 216 -------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNT--PEQLEENLKIASELEPSLTE 274 (391)
T ss_pred -------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCC--HHHHHHHHHHHhhcCCccCH
Confidence 67788888876 59999999999999999999999999 9999999998753 4999
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 014906 388 DDVNSIQEVTKKGKDLLG 405 (416)
Q Consensus 388 ee~~~L~~~~~~~~~~~~ 405 (416)
+|.+.|.++.+..+....
T Consensus 275 ~e~~il~~v~~~~~~~~~ 292 (391)
T COG1453 275 EELQILEKVEEIYRESLK 292 (391)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999888777665443
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=2.3e-42 Score=316.56 Aligned_cols=276 Identities=20% Similarity=0.293 Sum_probs=233.4
Q ss_pred eecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCc--cHHHHHHHHHhhhcCCCcceEEE
Q 014906 82 VSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLDK 159 (416)
Q Consensus 82 ~~~G~tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~~ 159 (416)
+.+|+||++||+||||+..++..++..+.++....|..|+..|||+|||++.||. ||+.+|.++++.||+ .++|.
T Consensus 25 R~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~---aYyIa 101 (342)
T KOG1576|consen 25 RQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPRE---AYYIA 101 (342)
T ss_pred hhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChh---heeee
Confidence 3489999999999999999988888878888888888899999999999999986 799999999999988 66665
Q ss_pred EEeecc-cC-CCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC---CccHHHHHHHHHHHHHcCcccEEEccCCC
Q 014906 160 VRGLTK-WV-PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTVALTNFD 234 (416)
Q Consensus 160 ~~i~tk-~~-~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~---~~~~~e~~~aL~~l~~~GkIr~iGvSn~~ 234 (416)
+|++-. .. .+-.+++++.+++++++||+||++||+|++++|..+.. ...+.|++.+|++||++||||+||||.+.
T Consensus 102 TKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgyp 181 (342)
T KOG1576|consen 102 TKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYP 181 (342)
T ss_pred eeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccc
Confidence 555431 11 12368999999999999999999999999999997764 22377999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CeeEec--ccccccccchhHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchH
Q 014906 235 TERLRIILENGI-PVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSL 311 (416)
Q Consensus 235 ~~~l~~~~~~g~-~~~~~Q--~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~ 311 (416)
.+.+.++++.+. ..+++- .+|++.|.. .-..+++.+..|++||.-++++.|+|++ .||+.+||.-
T Consensus 182 ldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt~-----------~gp~~wHPaS 249 (342)
T KOG1576|consen 182 LDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLTN-----------QGPPPWHPAS 249 (342)
T ss_pred hHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhhc-----------CCCCCCCCCC
Confidence 999999998642 344443 777775432 2367888899999999999999999986 5788888877
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCH
Q 014906 312 QKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE 387 (416)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ 387 (416)
++.+. ...+-.++|++.|+....+|+.|+++.+++.++++|++| .++++.|+++..-.||.
T Consensus 250 ~Elk~-------------~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s--~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 250 DELKE-------------AAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSS--RQLLRINLDANFDRLSS 310 (342)
T ss_pred HHHHH-------------HHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCch--HHHHHHHHHhhhccccc
Confidence 66543 336778899999999999999999999999999999999 99999999987667776
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00015 Score=67.00 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CCCeeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 209 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~-g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
..+.|..||+++.+|+|..||||.|+..+|++++.. .+.|.++|+...--+ ....++.++|..++|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cC-vvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCC-VVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccc-cCCHHHHHHhhhcceeeeecC
Confidence 456999999999999999999999999999999984 678999999887543 334489999999999999877
No 19
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.83 E-value=5.9 Score=36.09 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHH---------
Q 014906 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS--------- 185 (416)
Q Consensus 115 ~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~S--------- 185 (416)
++|..-++-|-+.+|-.-..|. |-+.|++ ++. ++..+. +.+.+.|.+++++-
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~----LL~~L~~---~k~----v~g~Gv--------Eid~~~v~~cv~rGv~Viq~Dld 65 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGE----LLAYLKD---EKQ----VDGYGV--------EIDPDNVAACVARGVSVIQGDLD 65 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchH----HHHHHHH---hcC----CeEEEE--------ecCHHHHHHHHHcCCCEEECCHH
Confidence 4566677888999997766443 3455543 111 111111 34566666666544
Q ss_pred --HhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH-cCCCeeEecccccccccch
Q 014906 186 --RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRP 262 (416)
Q Consensus 186 --L~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~-~g~~~~~~Q~~~n~l~~~~ 262 (416)
|..+.-+.+|.+.+..--. .+...-+.|+++..-|+---|++.||.-++.+.-+- .|--|.+-+++|+..+..+
T Consensus 66 ~gL~~f~d~sFD~VIlsqtLQ---~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN 142 (193)
T PF07021_consen 66 EGLADFPDQSFDYVILSQTLQ---AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN 142 (193)
T ss_pred HhHhhCCCCCccEEehHhHHH---hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Confidence 4444445555555543211 123344556777888998899999999998877665 5655777788888754322
Q ss_pred -----hHHHHHHHHHcCCeEEEeccccCcc
Q 014906 263 -----QQKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 263 -----~~~ll~~~~~~gi~via~spL~~G~ 287 (416)
-.+..++|++.|+.|.-..++.++.
T Consensus 143 ih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 143 IHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred cccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 2589999999999999999988764
No 20
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.93 E-value=5.4 Score=37.74 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC-cccEEEccCCCHHHHHHHHHcCCCeeE
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-kIr~iGvSn~~~~~l~~~~~~g~~~~~ 250 (416)
.++.+...+-++. |..+|+++|++-..-.+... +-..+.++.++.+++.+ .++...++....+.++.+.+.++ +.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~--~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGV--DE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCc--CE
Confidence 4566776666666 77899999888765544222 22455688889999988 67777777766888888888763 44
Q ss_pred ecccccccc--------cc------hhHHHHHHHHHcCCeEEEec
Q 014906 251 NQVQHSVVD--------MR------PQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 251 ~Q~~~n~l~--------~~------~~~~ll~~~~~~gi~via~s 281 (416)
+++....-+ +. .-...++++++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444443321 11 12367888999998876554
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=85.76 E-value=22 Score=34.74 Aligned_cols=152 Identities=11% Similarity=0.056 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCcc----HHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPA----EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~s----E~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~ 184 (416)
+.++..+.++.+++.|++.|+.-- |.. .+.+....+..+ + . .+.++ ... .++.+..++- -+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~-~-~l~vD------~n~---~~~~~~A~~~-~~ 198 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-D-A-RLRVD------ANQ---GWTPEEAVEL-LR 198 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-C-C-eEEEe------CCC---CcCHHHHHHH-HH
Confidence 567778888889999999998642 321 122222222222 1 1 22221 111 2344443322 23
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccc-cch
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRP 262 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~-~~~ 262 (416)
.|+++++ .++-.|-.. +-++.+.+|++...|- +.|=+-++.+.++.+++.+ -.+.+|+..+.+- ...
T Consensus 199 ~l~~~~l-----~~iEeP~~~-----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~ 267 (316)
T cd03319 199 ELAELGV-----ELIEQPVPA-----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTE 267 (316)
T ss_pred HHHhcCC-----CEEECCCCC-----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHH
Confidence 4445444 444445332 2356677888877666 4455667899999998864 4788888866531 112
Q ss_pred hHHHHHHHHHcCCeEEEeccccCc
Q 014906 263 QQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 263 ~~~ll~~~~~~gi~via~spL~~G 286 (416)
-..+..+|+++|+.++..+-+..+
T Consensus 268 ~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 268 ALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHHHcCCCEEEECchhhH
Confidence 247899999999999987655443
No 22
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=84.88 E-value=11 Score=35.94 Aligned_cols=67 Identities=4% Similarity=-0.057 Sum_probs=49.8
Q ss_pred HHHHHHcCcccEEE--ccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccc
Q 014906 216 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 216 L~~l~~~GkIr~iG--vSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL 283 (416)
|.+-.++|+. -+| ++.-++...+.+...|+++.++=.|+.+++...-..++.+|+..|+..+..-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3444445764 344 334466666667778999999999999998777778999999999999887754
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=83.54 E-value=19 Score=35.24 Aligned_cols=81 Identities=10% Similarity=-0.063 Sum_probs=50.7
Q ss_pred HHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHH
Q 014906 141 YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (416)
Q Consensus 141 lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~ 220 (416)
+..-++.++.... ++++++.+...-.-....-+++.+.+++.+-+++.+++.||+=.=+.............++|..|+
T Consensus 56 ~~~~i~~lk~~G~-kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq 134 (294)
T cd06543 56 IKSDIAALRAAGG-DVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQ 134 (294)
T ss_pred HHHHHHHHHHcCC-eEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHH
Confidence 4445555555554 677777664431111134588999999999999999999998544422111122455667777777
Q ss_pred Hc
Q 014906 221 EE 222 (416)
Q Consensus 221 ~~ 222 (416)
++
T Consensus 135 ~~ 136 (294)
T cd06543 135 KE 136 (294)
T ss_pred HH
Confidence 65
No 24
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=81.77 E-value=53 Score=31.90 Aligned_cols=214 Identities=14% Similarity=0.117 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (416)
.++.+...+-+ +.|.++|+++|++-.++.|.... ...+.++.+..+.+...++...+. .+...++.+++.|++...+
T Consensus 22 ~~s~e~k~~ia-~~L~~~Gv~~IEvgsf~~p~~~p-~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i 98 (287)
T PRK05692 22 FIPTADKIALI-DRLSAAGLSYIEVASFVSPKWVP-QMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAV 98 (287)
T ss_pred CcCHHHHHHHH-HHHHHcCCCEEEeCCCcCccccc-ccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEE
Confidence 45656555544 44889999999997666554221 233446666666555456666665 4788888888876543222
Q ss_pred ccccccc------ccch------hHHHHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhh
Q 014906 252 QVQHSVV------DMRP------QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVD 319 (416)
Q Consensus 252 Q~~~n~l------~~~~------~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 319 (416)
-+.-|-. .+.. -.+.+++++++|+.+.++-..+-|. |..+ +.....+.++.+...
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~------------~~~~-~~~~~~~~~~~~~~~ 165 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC------------PYEG-EVPPEAVADVAERLF 165 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC------------CCCC-CCCHHHHHHHHHHHH
Confidence 2222211 1111 1368999999999886433332221 1111 211111112111111
Q ss_pred hc-----------C--CchhHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHcCCCCeeEeecC--------C-
Q 014906 320 AW-----------G--GWSQFQVLLQTLKRIAS----------KHGVSIPVVAVRYILDQPAVAGSMIGV--------R- 367 (416)
Q Consensus 320 ~~-----------~--~~~~~~~~~~~l~~ia~----------~~g~s~aq~aL~w~l~~~~v~~~i~G~--------~- 367 (416)
.. | .+....++++.+++-.. .+|..++...-++-..-..+.+.+-|. +
T Consensus 166 ~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~a 245 (287)
T PRK05692 166 ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGAS 245 (287)
T ss_pred HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcc
Confidence 11 1 12233333334332211 124555665556656666666666644 2
Q ss_pred -CCcHHHHHHHhhhhcC--CCCHHHHHHHHHHHhhCC
Q 014906 368 -LGLAEHIQDTNAIFML--SLDEDDVNSIQEVTKKGK 401 (416)
Q Consensus 368 -s~~~e~l~en~~a~~~--~Lt~ee~~~L~~~~~~~~ 401 (416)
+...|++--+++..+. .+.-+.+.++.+...+..
T Consensus 246 GN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~ 282 (287)
T PRK05692 246 GNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKL 282 (287)
T ss_pred ccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHh
Confidence 3337778777776655 466666666666655543
No 25
>PRK00208 thiG thiazole synthase; Reviewed
Probab=81.28 E-value=51 Score=31.34 Aligned_cols=107 Identities=11% Similarity=0.014 Sum_probs=77.1
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeE
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 250 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~ 250 (416)
.+.+.+...+..+-..+-+++++|-|=.|..+....++..+++++.++|.++|.+- +=+++-++...+++.+.| +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G--~~~ 147 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG--CAA 147 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC--CCE
Confidence 46788888888899999999999999888888877788999999999999999863 336666888888888765 444
Q ss_pred eccccccccc--ch-hHHHHHHHHH-cCCeEEEe
Q 014906 251 NQVQHSVVDM--RP-QQKMAELCQL-TGVKLITY 280 (416)
Q Consensus 251 ~Q~~~n~l~~--~~-~~~ll~~~~~-~gi~via~ 280 (416)
++.--.++-. .. ..++++...+ .++.||+-
T Consensus 148 vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 148 VMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 4332222210 00 1244665555 47888764
No 26
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=80.89 E-value=20 Score=34.05 Aligned_cols=63 Identities=5% Similarity=-0.143 Sum_probs=46.9
Q ss_pred HHcCcccEEE--ccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccc
Q 014906 220 KEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 220 ~~~GkIr~iG--vSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL 283 (416)
.++|+. .+| ++.-++...+.+...|+++.++=.|+.+++...-..++..++..|+..+..-|-
T Consensus 7 l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 7 LLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 334654 344 344466666767778999999999999998776678999999999988887753
No 27
>PRK08392 hypothetical protein; Provisional
Probab=80.41 E-value=48 Score=30.52 Aligned_cols=146 Identities=15% Similarity=0.211 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCCCEEECCCCCC--ccHHHHHHHH---HhhhcCCCcceEEEEEeeccc--CCCCCCCCHHHHHHHHHH
Q 014906 112 DAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFI---NRVRRERPPEFLDKVRGLTKW--VPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~YG--~sE~~lG~al---~~~~r~r~~~~~~~~~i~tk~--~~~~~~~~~~~v~~~le~ 184 (416)
...+.++.|.+.|++.|=.+++.- ..+. +-..+ ++.+++ . . +++..+.-. .+. . .+..++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~-~~~y~~~i~~l~~~-~-~--i~il~GiE~~~~~~----~----~~~~~~ 81 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSK-FNAYINEIRQWGEE-S-E--IVVLAGIEANITPN----G----VDITDD 81 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhh-HHHHHHHHHHHhhc-c-C--ceEEEeEEeeecCC----c----chhHHH
Confidence 467899999999999987776641 1111 12222 222222 1 2 233323222 121 1 123334
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccC----C---C-HHHH----HHHHHcCCCeeEec
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN----F---D-TERL----RIILENGIPVVSNQ 252 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn----~---~-~~~l----~~~~~~g~~~~~~Q 252 (416)
.+++ .||+ +..+|++.. .+...+-.+.+.++.+.|.+.-+|=-. + . .+.+ +.+.++|+.+.+|-
T Consensus 82 ~~~~--~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt 157 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS 157 (215)
T ss_pred HHhh--CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC
Confidence 4443 4666 778895422 222556677888888899888777321 1 1 1233 33334676666664
Q ss_pred ccccccccchhHHHHHHHHHcCCeEEE
Q 014906 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 253 ~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
.+ +.+...+++.|++.|+.++.
T Consensus 158 -~~----~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 158 -RY----RVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred -CC----CCCCHHHHHHHHHcCCEEEE
Confidence 22 23556899999999987654
No 28
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=79.72 E-value=28 Score=33.50 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=48.5
Q ss_pred HHHHHHcCcccEEE--ccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEecc
Q 014906 216 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 216 L~~l~~~GkIr~iG--vSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~sp 282 (416)
|.+.-++|+.- +| +..-++...+.+...|+++.++=.|+.+++......++..++..|+..+..-|
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 34444457653 44 33446666676777889999999999999877777899999999998887765
No 29
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.80 E-value=84 Score=32.38 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCCEEE--------CCCCCCc------cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHH
Q 014906 112 DAVDAMLRYADAGLTTFD--------MADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fD--------TA~~YG~------sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~ 177 (416)
...++++.|+|+|.--+- |...|-+ .+++.+.++.-...... .+.. .+. .-....
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~ag~~-iLqs----t~d------~~egaa 251 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVARAGGR-ILQS----THD------RDEGAA 251 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHHhcCc-eeEe----ecc------ccchHH
Confidence 567899999999876666 6666632 35556666543222211 1211 111 124456
Q ss_pred HHHHHHHHHhhcC-CCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccc
Q 014906 178 VRESIDVSRRRMD-VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS 256 (416)
Q Consensus 178 v~~~le~SL~rLg-~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n 256 (416)
+.+.++++-+.-+ -..+-+.+.|..+. .-..+|++.+....+++...-|.|+-+.-.+|.
T Consensus 252 ~L~~l~~a~ri~~R~~~vr~v~s~~a~a-------------------g~~n~~~a~~~lgl~~kaq~~G~pVg~~~~p~~ 312 (579)
T COG3653 252 ALEALLEASRIGNRRKGVRMVMSHSADA-------------------GSMNWGVAVFGLGLIEKAQLLGSPVGFDHYPYT 312 (579)
T ss_pred HHHHHHHHHHhcCcccCceEEEeccccc-------------------cccchhhhhhccchHHHHHHhCCcceeeecccc
Confidence 6666666666663 34577888887543 123456666666666665544444333323333
Q ss_pred ccccchhHHHHHHHHHcCC
Q 014906 257 VVDMRPQQKMAELCQLTGV 275 (416)
Q Consensus 257 ~l~~~~~~~ll~~~~~~gi 275 (416)
. +..-+.-.+++.++.|.
T Consensus 313 a-~~ys~~~~~p~~~e~g~ 330 (579)
T COG3653 313 A-ELYSDGIDLPVFEEFGA 330 (579)
T ss_pred c-chhccCCcchhhhhccc
Confidence 2 11222234555555554
No 30
>PRK08609 hypothetical protein; Provisional
Probab=77.37 E-value=46 Score=35.68 Aligned_cols=152 Identities=13% Similarity=0.102 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCCEEECCCCC-------CccHHHHHHH---HHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHH
Q 014906 112 DAVDAMLRYADAGLTTFDMADHY-------GPAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~Y-------G~sE~~lG~a---l~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~ 181 (416)
...++++.|.+.|+.+|=.++|+ |.+...+-.. +++.++... .+ ++..+.-..- .++...+-
T Consensus 350 sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~-~i--~Il~GiEv~i-----~~~g~~d~ 421 (570)
T PRK08609 350 SIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYP-EI--DILSGIEMDI-----LPDGSLDY 421 (570)
T ss_pred CHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcC-CC--eEEEEEEEee-----cCCcchhh
Confidence 36669999999999999888885 2222222222 233333221 22 2332322111 11111122
Q ss_pred HHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccC---------C--CHHHHHHH-HHcCCCee
Q 014906 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------F--DTERLRII-LENGIPVV 249 (416)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn---------~--~~~~l~~~-~~~g~~~~ 249 (416)
.+..|+. .||+ +..+|++-. .+ .++.++.+.++.+.|.+.-||=-. + +.+.+.++ .+.|+.+.
T Consensus 422 ~~~~L~~--~D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lE 496 (570)
T PRK08609 422 DDEVLAE--LDYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALE 496 (570)
T ss_pred cHHHHHh--hCEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEE
Confidence 2224443 5766 778897532 22 567788899999999988777332 1 12333333 45665444
Q ss_pred EecccccccccchhHHHHHHHHHcCCeEEE
Q 014906 250 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 250 ~~Q~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
+| -+.+...+...++..|.+.|+.++.
T Consensus 497 IN---a~~~r~~~~~~~~~~~~e~Gv~i~i 523 (570)
T PRK08609 497 LN---ANPNRLDLSAEHLKKAQEAGVKLAI 523 (570)
T ss_pred Ec---CCccccCccHHHHHHHHHcCCEEEE
Confidence 44 3333233455799999999997543
No 31
>PRK05414 urocanate hydratase; Provisional
Probab=76.97 E-value=6 Score=41.08 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=52.1
Q ss_pred HHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCee--Eeccc
Q 014906 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV--SNQVQ 254 (416)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~--~~Q~~ 254 (416)
.+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.+.++++.++.|+ +-|..
T Consensus 201 ~ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTS 266 (556)
T PRK05414 201 SRIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTS 266 (556)
T ss_pred HHHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcc
Confidence 344567888999977 44599999999999999999999999988899999999886554 44544
No 32
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=76.89 E-value=5.9 Score=40.94 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=51.9
Q ss_pred HHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCee--Eeccc
Q 014906 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV--SNQVQ 254 (416)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~--~~Q~~ 254 (416)
.+.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.+.++++.++.|+ +-|..
T Consensus 192 ~ri~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTS 257 (545)
T TIGR01228 192 SRIDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTS 257 (545)
T ss_pred HHHHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCc
Confidence 344567778999976 44599999999999999999999999988899999999876554 44544
No 33
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=74.07 E-value=7 Score=39.25 Aligned_cols=148 Identities=15% Similarity=0.182 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCc--cHHH---HHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGP--AEDL---YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~---lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le 183 (416)
+.++..+.|+.|.+.|++.+=|+=+.-. .+.. +.+.++.....+- ++++++ .|.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~-~v~~Di------sp~-------------- 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGM-EVIADI------SPK-------------- 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT--EEEEEE-------CC--------------
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEC------CHH--------------
Confidence 5788999999999999999989877632 1111 2333333333322 222221 111
Q ss_pred HHHhhcCCCccceEEeccC-------CCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccc
Q 014906 184 VSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS 256 (416)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p-------d~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n 256 (416)
+|++||.++-|+-.++.. |..-. .+.+.+|-+.|.--.+=.|+.+.+.+..+++.+..+.-+..-+|
T Consensus 71 -~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~-----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HN 144 (357)
T PF05913_consen 71 -VLKKLGISYDDLSFFKELGIDGLRLDYGFS-----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHN 144 (357)
T ss_dssp -HHHTTT-BTTBTHHHHHHT-SEEEESSS-S-----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE--
T ss_pred -HHHHcCCCHHHHHHHHHcCCCEEEECCCCC-----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEec
Confidence 333444444333333321 22111 12334444447766777888888999998887655554444455
Q ss_pred ccccchh--------HHHHHHHHHcCCeEEEecccc
Q 014906 257 VVDMRPQ--------QKMAELCQLTGVKLITYGTVM 284 (416)
Q Consensus 257 ~l~~~~~--------~~ll~~~~~~gi~via~spL~ 284 (416)
. +++++ .+.-.+.++.|+.+.|+-|=-
T Consensus 145 f-YPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~ 179 (357)
T PF05913_consen 145 F-YPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPGD 179 (357)
T ss_dssp --B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--S
T ss_pred c-cCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4 23333 244567889999999988754
No 34
>PRK06740 histidinol-phosphatase; Validated
Probab=73.21 E-value=1e+02 Score=30.60 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=59.2
Q ss_pred HHHHHHhhcCCCccceEEeccCCC---CCcc-------------HHHHHHHHHHHHHcCcccEEEcc------CCCH---
Q 014906 181 SIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALT------NFDT--- 235 (416)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~pd~---~~~~-------------~~e~~~aL~~l~~~GkIr~iGvS------n~~~--- 235 (416)
.+++.|+...+||+ +..+|+.+. ..+. ...-.+.+.++.+.|++..||=- |+.+
T Consensus 157 ~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~~ 235 (331)
T PRK06740 157 ELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDEN 235 (331)
T ss_pred HHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcchh
Confidence 45556666778887 788897531 1111 12234677888899999888822 2211
Q ss_pred ---HHHHH----HHHcCCCeeEecc-cc--cccccchhHHHHHHHHHcCCeEEEec
Q 014906 236 ---ERLRI----ILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 236 ---~~l~~----~~~~g~~~~~~Q~-~~--n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
+.+++ +.+.|+.+.+|-- .+ ..-+..+...+++.|++.|+.++.-|
T Consensus 236 ~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgS 291 (331)
T PRK06740 236 EQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSS 291 (331)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEee
Confidence 23333 3346776777753 11 21223355689999999999875433
No 35
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=72.64 E-value=89 Score=29.68 Aligned_cols=107 Identities=11% Similarity=0.004 Sum_probs=76.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeE
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 250 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~ 250 (416)
.+++.+...+..+-..+-+++++|-|=.+..+..-.++..+++++.++|.++|.+- +=+++-++...+++.+.| +++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~G--~~~ 147 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDAG--CAA 147 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC--CCE
Confidence 46788888888899999999999999888888877778999999999999999863 446677888888888765 444
Q ss_pred ecccccccccc--h-hHHHHHHHHH-cCCeEEEe
Q 014906 251 NQVQHSVVDMR--P-QQKMAELCQL-TGVKLITY 280 (416)
Q Consensus 251 ~Q~~~n~l~~~--~-~~~ll~~~~~-~gi~via~ 280 (416)
++.--.++-.. . ..++++...+ .++.||+-
T Consensus 148 vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 148 VMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred eCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 43322222110 0 1345555555 47888764
No 36
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=71.36 E-value=2.3 Score=42.39 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=36.6
Q ss_pred cCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCe
Q 014906 222 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (416)
Q Consensus 222 ~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~ 276 (416)
-|+|||+||--|+.+++.++.+..-.-+..+.+..++-...+..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 5999999999999999999886422223333333333222344677778887774
No 37
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=70.88 E-value=1.1e+02 Score=30.01 Aligned_cols=155 Identities=8% Similarity=0.098 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCCCCc---cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHH
Q 014906 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le 183 (416)
..+.++..++++.+.+.|++.|.-.. |. ..+ +-+.++....... ...+.+.|.-. .+.+.+
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~li~~i~~~~~---~~~i~itTNG~---------ll~~~~- 111 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKD-LEDIIAALAALPG---IRDLALTTNGY---------LLARRA- 111 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccC-HHHHHHHHHhcCC---CceEEEEcCch---------hHHHHH-
Confidence 46788999999999999998776432 32 111 2344443322100 01233444310 111222
Q ss_pred HHHhhcCCCccceEEeccCCCC-------CccHHHHHHHHHHHHHcCc----ccEEEccCCCHHHHHHHHH--cCCCeeE
Q 014906 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILE--NGIPVVS 250 (416)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~-------~~~~~e~~~aL~~l~~~Gk----Ir~iGvSn~~~~~l~~~~~--~g~~~~~ 250 (416)
+.|...|++.|- +.||..+.. ...+++++++++.+++.|. |..+.+-+.+.+++.++++ ...++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 234455655442 344543321 1248889999999999985 3345555666667766655 1223344
Q ss_pred ecccccccccc---------hhHHHHHHHHHcCCeEE
Q 014906 251 NQVQHSVVDMR---------PQQKMAELCQLTGVKLI 278 (416)
Q Consensus 251 ~Q~~~n~l~~~---------~~~~ll~~~~~~gi~vi 278 (416)
.-++|.++... ...++++..++.|+.+.
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 44555554321 12367777877765543
No 38
>PRK14017 galactonate dehydratase; Provisional
Probab=70.39 E-value=1.1e+02 Score=30.74 Aligned_cols=83 Identities=16% Similarity=0.078 Sum_probs=59.4
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~ 271 (416)
+++.++-.|-... -++.+.+|++...+. ..|=|.++...++.+++.+ -++++|+..+.+-- ..-..+.+.|+
T Consensus 203 ~~~~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~ 276 (382)
T PRK14017 203 YRPMFIEEPVLPE-----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAE 276 (382)
T ss_pred cCCCeEECCCCcC-----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHH
Confidence 4555666664322 256778888887665 6677788999999999875 37888888765321 12347999999
Q ss_pred HcCCeEEEecc
Q 014906 272 LTGVKLITYGT 282 (416)
Q Consensus 272 ~~gi~via~sp 282 (416)
.+|+.++..+.
T Consensus 277 ~~gi~~~~h~~ 287 (382)
T PRK14017 277 AYDVALAPHCP 287 (382)
T ss_pred HcCCeEeecCC
Confidence 99999997764
No 39
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=70.10 E-value=54 Score=33.97 Aligned_cols=110 Identities=9% Similarity=0.064 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHc--CcccEEEccCCC---HHHHHHHHHcCC
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFD---TERLRIILENGI 246 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~--GkIr~iGvSn~~---~~~l~~~~~~g~ 246 (416)
.++++.+.+.+++..+.++ .++.+-|-.|.......+.+++.|..++++ |. .+.+|+.. ++.++++++.|+
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~gv 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDLGV 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHCCC
Confidence 4788899988888777652 345566666543332235578888888888 43 56766543 688888877653
Q ss_pred CeeEecccccccccchh---------------------------HHHHHHHHHcCCeEEEeccccCcc
Q 014906 247 PVVSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 247 ~~~~~Q~~~n~l~~~~~---------------------------~~ll~~~~~~gi~via~spL~~G~ 287 (416)
+.+.+..+-++.... ..-++.+.+.|+.+....++-.|+
T Consensus 135 --d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpGi 200 (442)
T TIGR01290 135 --GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPGI 200 (442)
T ss_pred --CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCCc
Confidence 344444444331110 123456777888888777776553
No 40
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=69.84 E-value=1e+02 Score=29.17 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=73.1
Q ss_pred HHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEE--E-----------eecccCCCCCCCCHHHHHHHH
Q 014906 116 AMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV--R-----------GLTKWVPPPVKMTSSIVRESI 182 (416)
Q Consensus 116 ~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~--~-----------i~tk~~~~~~~~~~~~v~~~l 182 (416)
-++.+++.|...+-....--..-.++.++.+..+.+ .+++++ + +.++-|......+...+.+.
T Consensus 88 d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~---~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~- 163 (254)
T TIGR00735 88 DVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQ---CIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKE- 163 (254)
T ss_pred HHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCC---CEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHH-
Confidence 344455568776644433222344567766665434 333332 1 12222222112233333333
Q ss_pred HHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHcC-CCeeEeccccccccc
Q 014906 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENG-IPVVSNQVQHSVVDM 260 (416)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g-~~~~~~Q~~~n~l~~ 260 (416)
|+++| +|.+.+|..+.......--++.+.++++.-.+.-|...+. +++.+.++++.+ +.-..+=.-++-- .
T Consensus 164 ---l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~-~ 236 (254)
T TIGR00735 164 ---VEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR-E 236 (254)
T ss_pred ---HHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC-C
Confidence 34566 4556666643311000012455566666656666666644 678888888754 3322111111111 1
Q ss_pred chhHHHHHHHHHcCCeE
Q 014906 261 RPQQKMAELCQLTGVKL 277 (416)
Q Consensus 261 ~~~~~ll~~~~~~gi~v 277 (416)
-...+++++|+++|+.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 22347899999999864
No 41
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=69.40 E-value=66 Score=30.53 Aligned_cols=66 Identities=14% Similarity=0.008 Sum_probs=46.4
Q ss_pred HHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEecc
Q 014906 217 TDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 217 ~~l~~~GkI-r~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~sp 282 (416)
.+..++|+. -.+.+..-++..++.+...|+++.++=.|+++++...-..++..++..|+.++..-|
T Consensus 4 k~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 4 KQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 344455775 223344556777777777888999999999997655555688888888888887653
No 42
>PRK07328 histidinol-phosphatase; Provisional
Probab=69.37 E-value=1.1e+02 Score=29.25 Aligned_cols=158 Identities=14% Similarity=0.245 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCEEECCCCCCc--------------cHHHHHHH---HHhhhcCCCcceEEEEEeecccCCCCCCCC
Q 014906 112 DAVDAMLRYADAGLTTFDMADHYGP--------------AEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~YG~--------------sE~~lG~a---l~~~~r~r~~~~~~~~~i~tk~~~~~~~~~ 174 (416)
...+.+++|.+.|+..+=.+++.-. ...-+-.. +++++++.. .+.+-+.+=..+.+
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~-~i~Il~GiE~~~~~------ 91 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFP-DLYVRLGIEADYHP------ 91 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcC-CCeEEEEEEecccC------
Confidence 4678999999999997765555210 11111222 222222211 22222222222222
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEeccCCCC---C---------ccHHHHHH----HHHHHHHcCcccEEEccCC-----
Q 014906 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---N---------PGYLDALN----HLTDLKEEGKIKTVALTNF----- 233 (416)
Q Consensus 175 ~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~---~---------~~~~e~~~----aL~~l~~~GkIr~iGvSn~----- 233 (416)
.-.+.+++.|++-..||+ |..+|+.+.. . .+.++.++ .+.++.+.|.+.-+|=-..
T Consensus 92 --~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~ 168 (269)
T PRK07328 92 --GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFG 168 (269)
T ss_pred --CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcC
Confidence 123455566777777877 7888985421 0 11233333 4677888899888872221
Q ss_pred --C--------HHHHHHHHHcCCCeeEeccc--ccccccchhHHHHHHHHHcCCeEEE
Q 014906 234 --D--------TERLRIILENGIPVVSNQVQ--HSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 234 --~--------~~~l~~~~~~g~~~~~~Q~~--~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
. .+.++.+.+.|+.+.+|--. +..-+..+...+++.|++.|+.++.
T Consensus 169 ~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~iti 226 (269)
T PRK07328 169 HRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVL 226 (269)
T ss_pred CCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEE
Confidence 1 12234444567666666432 1211234556899999999998554
No 43
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=68.95 E-value=1.2e+02 Score=29.77 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhh
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~r 188 (416)
+.++..+.+..+.+.|++.|=.--. ...+.-+=+++++.. +.. .++++ .+ ..++.+..+ .+ +.|+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~-~~~d~~~v~~vr~~~-~~~-~l~vD--------aN-~~~~~~~a~-~~-~~l~~ 197 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKIT-PQIMHQLVKLRRLRF-PQI-PLVID--------AN-ESYDLQDFP-RL-KELDR 197 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeC-CchhHHHHHHHHHhC-CCC-cEEEE--------CC-CCCCHHHHH-HH-HHHhh
Confidence 4566777888888999998732110 111111223333322 211 22221 11 123555432 22 33333
Q ss_pred cCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHH
Q 014906 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKM 266 (416)
Q Consensus 189 Lg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~l 266 (416)
.++.++-.|-. .+-++.+.++++.-.+. +.|=|.++...++.+++.+ -.+++|+..+.+-. ..-..+
T Consensus 198 -----~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 198 -----YQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred -----CCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHH
Confidence 45556666642 23456778887776555 6778889999999998865 47788887765321 122478
Q ss_pred HHHHHHcCCeEEEeccccCcc
Q 014906 267 AELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 267 l~~~~~~gi~via~spL~~G~ 287 (416)
...|+++|+.++..+.+..|+
T Consensus 267 ~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHcCCeEEEcceEcccH
Confidence 999999999999776665543
No 44
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=68.26 E-value=10 Score=39.35 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCe--eEeccc
Q 014906 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV--VSNQVQ 254 (416)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~--~~~Q~~ 254 (416)
++.-+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-.+.+.++++.++.| .+-|..
T Consensus 191 ~ri~kR~~~g~ld~~--------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS 256 (546)
T PF01175_consen 191 SRIEKRLEQGYLDEV--------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTS 256 (546)
T ss_dssp HHHHHHHHTTSSSEE--------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SS
T ss_pred HHHHHHHhCCCeeEE--------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCc
Confidence 344456677899987 3459999999999999999999999998889999999987644 455655
No 45
>PRK07945 hypothetical protein; Provisional
Probab=66.90 E-value=1.4e+02 Score=29.66 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCCCEEECCCCCC-------ccHHHHHHH---HHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHH
Q 014906 110 RDDAVDAMLRYADAGLTTFDMADHYG-------PAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (416)
Q Consensus 110 ~~~~~~~l~~Al~~Gin~fDTA~~YG-------~sE~~lG~a---l~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~ 179 (416)
.....+.+++|.+.|+..+=.++|.- -+...+-+. +++.++... .+.+-+.+=..+.+. ...+...
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~-~I~Il~GiE~d~~~~---g~~~~~~ 185 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELA-PFRILTGIEVDILDD---GSLDQEP 185 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEEeEecccCC---CCcchhH
Confidence 34578899999999999887777631 112212222 222233222 222222222222221 1222222
Q ss_pred HHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc------C---------CCH-HHHHHHHH
Q 014906 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT------N---------FDT-ERLRIILE 243 (416)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS------n---------~~~-~~l~~~~~ 243 (416)
+ .|+. .||+ +..+|+.... +..+..+.|.++.+.+++..+|=- + +.. +.++.+.+
T Consensus 186 ~----~l~~--~D~v-IgSvH~~~~~--~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e 256 (335)
T PRK07945 186 E----LLDR--LDVV-VASVHSKLRM--DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACRE 256 (335)
T ss_pred H----HHHh--CCEE-EEEeecCCCC--CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHH
Confidence 2 3333 5666 7788986432 245567888888888998888821 1 122 33344555
Q ss_pred cCCCeeEecccccccccchhHHHHHHHHHcCCeEEE
Q 014906 244 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 244 ~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
.|+.+.+|--.. ...+...+++.|++.|+.++.
T Consensus 257 ~g~~lEINt~~~---r~~P~~~il~~a~e~G~~vti 289 (335)
T PRK07945 257 HGTAVEINSRPE---RRDPPTRLLRLALDAGCLFSI 289 (335)
T ss_pred hCCEEEEeCCCC---CCCChHHHHHHHHHcCCeEEe
Confidence 676666664332 234666899999999998643
No 46
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=66.68 E-value=1.3e+02 Score=29.08 Aligned_cols=153 Identities=15% Similarity=0.162 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEEC----------CCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDM----------ADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 178 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDT----------A~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v 178 (416)
+.++..++.+.+.+.|+..||. ...|+.+.+.+-+.++.+...- .+-+.+|+ .+.. +.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl----~~~~-----~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKL----TPNV-----TDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEe----CCCc-----hhH
Confidence 4677888888888999999987 2345666777777777765431 12222333 2321 122
Q ss_pred HHHHHHHHhhcCCCccceE------EeccCCC-----------CCc-cHHHHHHHHHHHHHcCcccEEEccCC-CHHHHH
Q 014906 179 RESIDVSRRRMDVPCLDML------QFHWWDY-----------SNP-GYLDALNHLTDLKEEGKIKTVALTNF-DTERLR 239 (416)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~------~lH~pd~-----------~~~-~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~ 239 (416)
.+ +-+.++..|+|.|++. .+|.... ..+ ...-.++.+.++++.=.|--||+.+. +++.+.
T Consensus 169 ~~-~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 VE-IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred HH-HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 22 2234667898887764 1121000 000 01235677778877667889999986 789999
Q ss_pred HHHHcCCCeeEecccccccc-c----chhHHHHHHHHHcCC
Q 014906 240 IILENGIPVVSNQVQHSVVD-M----RPQQKMAELCQLTGV 275 (416)
Q Consensus 240 ~~~~~g~~~~~~Q~~~n~l~-~----~~~~~ll~~~~~~gi 275 (416)
+++..| -+.+|+-=-++. + ...+++.++.+++|.
T Consensus 248 ~~l~~G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 248 EFLMAG--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHcC--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 999877 466665433322 1 122466677777764
No 47
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.63 E-value=1.2e+02 Score=28.76 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC-cccEEEccCCCHHHHHHHHHcCCCee
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVV 249 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-kIr~iGvSn~~~~~l~~~~~~g~~~~ 249 (416)
..++.+...+-++. |.++|+++|++-+ |... +.-++.++.+.+.+ .++..++...+.+.++.+.+.|++..
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iE~g~---p~~~----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i 86 (259)
T cd07939 15 VAFSREEKLAIARA-LDEAGVDEIEVGI---PAMG----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAV 86 (259)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEec---CCCC----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEE
Confidence 34566766666655 9999999999852 3211 12345666666643 47778888788889988888775533
Q ss_pred Eeccccccc------ccchh------HHHHHHHHHcCCeEE
Q 014906 250 SNQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 278 (416)
Q Consensus 250 ~~Q~~~n~l------~~~~~------~~ll~~~~~~gi~vi 278 (416)
.+-+..|.. ++..+ ...+++|+++|+.+.
T Consensus 87 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 87 HISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 222222211 11111 267889999998765
No 48
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=66.22 E-value=1.2e+02 Score=28.69 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHH-HHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHh
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDL-YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~-lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~ 187 (416)
+.++..+.++.+.+.|++.|-.=-.-...+++ .=+++++.-.+.. .+.+ - .+ ..++.+...+-++ .|+
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~-~l~v----D----an-~~~~~~~a~~~~~-~l~ 153 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDA-ELRV----D----AN-RGWTPKQAIRALR-ALE 153 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCC-EEEE----e----CC-CCcCHHHHHHHHH-HHH
Confidence 45667778888899999988653211111111 1122322111111 1221 1 11 1245555544443 334
Q ss_pred hcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHH
Q 014906 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQK 265 (416)
Q Consensus 188 rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ 265 (416)
.++ +.++..|-... -++.+.++++.-.|. +.|=+-++++.++++++.+ .++++|+..+..-. ..-..
T Consensus 154 ~~~-----i~~iEeP~~~~-----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~~ 222 (265)
T cd03315 154 DLG-----LDYVEQPLPAD-----DLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAKTGGLTKAQR 222 (265)
T ss_pred hcC-----CCEEECCCCcc-----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEecccccCHHHHHH
Confidence 444 44456664321 256667777776555 4555667889999988764 47888888775421 12347
Q ss_pred HHHHHHHcCCeEEEeccccCc
Q 014906 266 MAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 266 ll~~~~~~gi~via~spL~~G 286 (416)
+...|+++|+.++..+.+.+|
T Consensus 223 ~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 223 VLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHcCCcEEecCccchH
Confidence 899999999999987665444
No 49
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=65.45 E-value=1.7e+02 Score=30.03 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHcCCCE-EECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeec---cc---CCCCCCCCHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLTT-FDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLT---KW---VPPPVKMTSSIVRE 180 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~-fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~t---k~---~~~~~~~~~~~v~~ 180 (416)
.+.+.-.+=++.|++.|-.. .|-+.. |+-..+--+.|+..+-+ +-++-+.. +. .....+++++.+.+
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLStg-gdl~~iR~~il~~s~vp-----vGTVPiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLSTG-GDLDEIRRAIIEASPVP-----VGTVPIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccCC-CCHHHHHHHHHHcCCCC-----CcChhHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 45566666789999999774 454433 65344323333332211 00111110 11 12334688999988
Q ss_pred HHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc
Q 014906 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 260 (416)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~ 260 (416)
.+|+-.+. =+|.+-||.-- ..+.++.++++|+ ..|+-+-...-+....... -+-||+.
T Consensus 148 ~ie~qa~~----GVDfmTiHcGi--------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n-------~~ENPly- 205 (431)
T PRK13352 148 VIEKQAKD----GVDFMTIHCGV--------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN-------NKENPLY- 205 (431)
T ss_pred HHHHHHHh----CCCEEEEccch--------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc-------CCcCchH-
Confidence 88887663 47888899631 3566788998885 5777777776666554421 2456663
Q ss_pred chhHHHHHHHHHcCCeEE
Q 014906 261 RPQQKMAELCQLTGVKLI 278 (416)
Q Consensus 261 ~~~~~ll~~~~~~gi~vi 278 (416)
..-+++++.|+++++.+-
T Consensus 206 e~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 206 EHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHHHHHHhCeeee
Confidence 344589999999999875
No 50
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=65.04 E-value=1.5e+02 Score=29.35 Aligned_cols=154 Identities=17% Similarity=0.122 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCc--c--HHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGP--A--EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~--s--E~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~ 184 (416)
+.++..+.++.+.+.|++.|-.--..+. . -+..-+.++..+..-.+++.+.+ .... .++.+...+-++.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~v----DaN~---~~~~~~a~~~~~~ 211 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMV----DANG---RWDLAEAIRLARA 211 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEE----ECCC---CCCHHHHHHHHHH
Confidence 4677778888888999998864322221 0 01111222222211000121111 1111 2355555444333
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-ch
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RP 262 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~ 262 (416)
|+.+ ++.+++.|-.. +.++.+.++++.-.|. ..|=|.++++.+.++++.+ ..+++|+.....-- ..
T Consensus 212 -l~~~-----~i~~iEqP~~~-----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~ 279 (357)
T cd03316 212 -LEEY-----DLFWFEEPVPP-----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVGGITE 279 (357)
T ss_pred -hCcc-----CCCeEcCCCCc-----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccCCHHH
Confidence 3333 44556666432 2356677787775555 4455667899999999865 47888888665321 12
Q ss_pred hHHHHHHHHHcCCeEEEec
Q 014906 263 QQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 263 ~~~ll~~~~~~gi~via~s 281 (416)
-..+...|+++|+.++..+
T Consensus 280 ~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 280 AKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHcCCeEeccC
Confidence 2479999999999988765
No 51
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=64.88 E-value=64 Score=30.69 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC----CccHHHHHHHHHHHHHc-CcccEEEcc---CCCHHHHHHHHH
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----NPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 243 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~----~~~~~e~~~aL~~l~~~-GkIr~iGvS---n~~~~~l~~~~~ 243 (416)
.++.+...+-++. |.++|+++|++-+....... .+.....++.++.+++. +.++...+. ....+.++.+.+
T Consensus 18 ~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIARA-LDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 4566666655555 88889999998754221100 00011234555555333 346666654 334667777777
Q ss_pred cCCCeeEecccccccccchhHHHHHHHHHcCCeEEEe
Q 014906 244 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 244 ~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~ 280 (416)
.|++ .+.+-.+.-+...-.+.+++++++|..+...
T Consensus 97 ~g~~--~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LGVD--VVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCCC--EEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 6644 3333333212223346888888888776553
No 52
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=64.74 E-value=14 Score=37.91 Aligned_cols=59 Identities=20% Similarity=0.199 Sum_probs=49.9
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (416)
.-+||.+.|+|.. ...++|++.-.++..++|+-.+||+-..-.+.+.++++.++.|+++
T Consensus 203 I~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 203 IDKRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 3457788999865 3458999999999999999999999998899999999988766655
No 53
>PRK06361 hypothetical protein; Provisional
Probab=64.46 E-value=1.1e+02 Score=27.75 Aligned_cols=184 Identities=12% Similarity=0.103 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCEEECCCCCCcc--HHHH---HHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHH
Q 014906 112 DAVDAMLRYADAGLTTFDMADHYGPA--EDLY---GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~YG~s--E~~l---G~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL 186 (416)
...+++++|.+.|+..|=-+++.... ...+ -+.+++.... . . +++..+.-..- ..++.+ ..+...+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~-~-~--i~v~~GiE~~~----~~~~~~-~~~~~~~ 81 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELY-W-D--IEVIPGVELTH----VPPKLI-PKLAKKA 81 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhc-C-C--CEEEEEEEEcc----cCchhh-chHHHHH
Confidence 46789999999999988777775321 1111 1112222111 1 1 23333333221 122233 3333555
Q ss_pred hhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEecccccccccchhHH
Q 014906 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQK 265 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ 265 (416)
.+++ .|+..+|......+... ..-.++.+.|.+.-+|=- .+..+.++.+.+.++.+.++-- .........
T Consensus 82 ~~~~---~~~~svH~~~~~~~~~~---~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~~---~~~~~~~~~ 152 (212)
T PRK06361 82 RDLG---AEIVVVHGETIVEPVEE---GTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITAR---KGHSLTNGH 152 (212)
T ss_pred HHCC---CEEEEECCCCcchhhhh---hhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEECC---CCcccchHH
Confidence 5665 56668995432222111 111457788887766622 2344556666666654444421 112334557
Q ss_pred HHHHHHHcCCeEEEeccccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCH
Q 014906 266 MAELCQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSI 345 (416)
Q Consensus 266 ll~~~~~~gi~via~spL~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 345 (416)
+++.+++.|+.++.-|.--. + +... -.+.+..++++.|.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~-----------------------~---------------~d~~-~~~~~~~i~~~~gl~~ 193 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHA-----------------------P---------------SDLI-TYEFARKVALGAGLTE 193 (212)
T ss_pred HHHHHHHhCCcEEEECCCCC-----------------------H---------------HHHH-HHHHHHHHHcCCCCCH
Confidence 99999999999877653211 0 1111 1367888888888888
Q ss_pred HHHHHHH
Q 014906 346 PVVAVRY 352 (416)
Q Consensus 346 aq~aL~w 352 (416)
.++--.+
T Consensus 194 ~~v~~~~ 200 (212)
T PRK06361 194 KELEEAL 200 (212)
T ss_pred HHHHHHH
Confidence 8876443
No 54
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.31 E-value=65 Score=30.88 Aligned_cols=106 Identities=7% Similarity=0.028 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCc-----cHHHHHHHHHHHHHcCcccEEEccCCC---HHHHHHHH
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----GYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIIL 242 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~-----~~~e~~~aL~~l~~~GkIr~iGvSn~~---~~~l~~~~ 242 (416)
+.++.+...+-++. |.++|+++|++-+......... ...+.++.+.++.+ +..+..+++... .+.+..+.
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 45677766665555 9999999999876544321100 01455655555543 246666666443 56666666
Q ss_pred HcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEe
Q 014906 243 ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 243 ~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~ 280 (416)
+.+++..-+.+.-+- ...-.+.+++++++|+.|...
T Consensus 93 ~~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 GSVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred cCCcCEEEEeccccc--HHHHHHHHHHHHHCCCeEEEE
Confidence 666544333333332 222347888999999876643
No 55
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=64.15 E-value=53 Score=30.38 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=59.0
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~ 271 (416)
.++.++-.|-+.. -++.+.+|++...+. ..+=|.++.+.+..+++.+ .++++|+..+.+-. ..-..+...|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 5666666665432 256667788777665 4455667788887777764 47888888775421 12247889999
Q ss_pred HcCCeEEEeccccCc
Q 014906 272 LTGVKLITYGTVMGG 286 (416)
Q Consensus 272 ~~gi~via~spL~~G 286 (416)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999988765443
No 56
>PRK05588 histidinol-phosphatase; Provisional
Probab=63.75 E-value=1.3e+02 Score=28.28 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCCEEECCCCC--C---c------cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHH
Q 014906 111 DDAVDAMLRYADAGLTTFDMADHY--G---P------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (416)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~Y--G---~------sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~ 179 (416)
....+.+++|.+.|++.+ .+++. . . -+..+ +.+++.+. +++..+-.. ++.++ -.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~-------~~I~~GiE~-----~~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRN-------NKLLLGIEL-----GMEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhc-------CCcceEEEe-----cccCC-CH
Confidence 357889999999999998 87773 1 0 01111 11222211 122222221 11122 34
Q ss_pred HHHHHHHhhcCCCccceEEeccCCCCC---------ccHHHH----HHHHHHHHH-cCcccEEE---cc----CC-----
Q 014906 180 ESIDVSRRRMDVPCLDMLQFHWWDYSN---------PGYLDA----LNHLTDLKE-EGKIKTVA---LT----NF----- 233 (416)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~pd~~~---------~~~~e~----~~aL~~l~~-~GkIr~iG---vS----n~----- 233 (416)
+.+++.|++...||+ +..+|+.+... .+.++. ++.+.++.+ .|++.-+| +- .+
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~ 159 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEI 159 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccc
Confidence 556777887888887 78899853211 112332 256666666 46565555 11 00
Q ss_pred ----CHHH----HHHHHHcCCCeeEecccccc-cccchhHHHHHHHHHcCCeEEEec
Q 014906 234 ----DTER----LRIILENGIPVVSNQVQHSV-VDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 234 ----~~~~----l~~~~~~g~~~~~~Q~~~n~-l~~~~~~~ll~~~~~~gi~via~s 281 (416)
-... ++.+.+.|+.+.+|--.+.. ....+...+++.|++.|+.+++.+
T Consensus 160 ~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lg 216 (255)
T PRK05588 160 YYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLG 216 (255)
T ss_pred cHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEE
Confidence 0112 23333456555555422111 112233457778888887754444
No 57
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=63.35 E-value=97 Score=27.22 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=55.3
Q ss_pred EEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc--C-CCeeEecccccccc---cchhHHHHHHH
Q 014906 197 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--G-IPVVSNQVQHSVVD---MRPQQKMAELC 270 (416)
Q Consensus 197 ~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~--g-~~~~~~Q~~~n~l~---~~~~~~ll~~~ 270 (416)
+++..|...+ .+++++.-.+=-+++-|+++=|.+-+.....++++. + +++.++-.++..-. +..++++-+..
T Consensus 2 ~yf~~pG~eN--T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L 79 (186)
T COG1751 2 VYFEKPGKEN--TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKEL 79 (186)
T ss_pred ccccCCcccc--hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHH
Confidence 4455665443 567787766666777889998887776666666652 2 33444433333211 12345788999
Q ss_pred HHcCCeEEEeccccCc
Q 014906 271 QLTGVKLITYGTVMGG 286 (416)
Q Consensus 271 ~~~gi~via~spL~~G 286 (416)
+++|..|..-|-..+|
T Consensus 80 ~erGa~v~~~sHalSg 95 (186)
T COG1751 80 KERGAKVLTQSHALSG 95 (186)
T ss_pred HHcCceeeeehhhhhc
Confidence 9999999987744343
No 58
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.10 E-value=1.5e+02 Score=28.21 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEE-eccCCCCC----ccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~-lH~pd~~~----~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~ 247 (416)
.+.+.+.+..++.+ .-|.|+||+=- --+|+... ...+.....++.+++.-.+ -|.+-+++++.++.+++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 46777777776654 56889999852 33344211 1133455666777665333 378889999999999998733
Q ss_pred eeEecccccccccchhHHHHHHHHHcCCeEEEecc
Q 014906 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 248 ~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~sp 282 (416)
.+| ..+..... ..+++.++++|+.++.+..
T Consensus 99 -iIN--dis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 -IIN--DVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred -EEE--eCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 222 22322111 5789999999999998764
No 59
>PRK06424 transcription factor; Provisional
Probab=61.13 E-value=31 Score=29.92 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCC
Q 014906 327 FQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLD 386 (416)
Q Consensus 327 ~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt 386 (416)
...+-..|+.+-++.|+|..++|-+--.++..|.-+--|-+..+.+.+.....+++..|+
T Consensus 82 ~~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~stIskiE~G~~~Ps~~~l~kLa~~Lgvsl~ 141 (144)
T PRK06424 82 VEDYAELVKNARERLSMSQADLAAKIFERKNVIASIERGDLLPDIKTARKLEKILGITLI 141 (144)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCC
Confidence 344556788888889999888885554443333322233333234555555555555444
No 60
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=61.05 E-value=44 Score=33.98 Aligned_cols=80 Identities=8% Similarity=-0.027 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 014906 112 DAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 191 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~ 191 (416)
....++++|++.|++++|||.++-. ...+.+..++.+ + ..-...-+.|. .+--.+..++++--+ .+
T Consensus 80 ~~~~i~ka~i~~gv~yvDts~~~~~-~~~~~~~a~~Ag------i--t~v~~~G~dPG---i~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 80 VDLTILKACIKTGVDYVDTSYYEEP-PWKLDEEAKKAG------I--TAVLGCGFDPG---ITNVLAAYAAKELFD--EI 145 (389)
T ss_pred hhHHHHHHHHHhCCCEEEcccCCch-hhhhhHHHHHcC------e--EEEcccCcCcc---hHHHHHHHHHHHhhc--cc
Confidence 4568999999999999999987543 122232222211 0 11112223332 222333333333222 58
Q ss_pred CccceEEeccCCCC
Q 014906 192 PCLDMLQFHWWDYS 205 (416)
Q Consensus 192 dyiDl~~lH~pd~~ 205 (416)
++||+|..+-|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 99999999998765
No 61
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=61.03 E-value=1.8e+02 Score=29.63 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=54.7
Q ss_pred hhcCCCccceEEeccCCC----CCccHHHHHHHHHHHHHc-CcccEEEcc---CCCHHHHHHHHHc--CCCeeEeccccc
Q 014906 187 RRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILEN--GIPVVSNQVQHS 256 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~----~~~~~~e~~~aL~~l~~~-GkIr~iGvS---n~~~~~l~~~~~~--g~~~~~~Q~~~n 256 (416)
+.+| +|++-||.-.. .+...++..++.++..+. +.=--|+=| ..+++.++..++. |-++-.+-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt-- 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASAN-- 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecC--
Confidence 5566 67888886432 222244566666665332 222233333 5588999888873 3233322211
Q ss_pred ccccc-hhHHHHHHHHHcCCeEEEeccccCc
Q 014906 257 VVDMR-PQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 257 ~l~~~-~~~~ll~~~~~~gi~via~spL~~G 286 (416)
.. .-+.+.+.|+++|..|++++|..-|
T Consensus 225 ---~e~Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 225 ---LDLDYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred ---chhhHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 12 3448999999999999999977543
No 62
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=60.69 E-value=1.1e+02 Score=32.22 Aligned_cols=157 Identities=10% Similarity=0.031 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHH-HcCCCEEECCCCC-CccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHH
Q 014906 107 RIDRDDAVDAMLRYA-DAGLTTFDMADHY-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al-~~Gin~fDTA~~Y-G~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~ 184 (416)
..+.+...+-|+... +.|+++|.-++.. ....+.+-+.++...+.. .+.+.....+.... ...+.+ +. +
T Consensus 221 ~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~--~l~i~w~~~~r~~~--i~~d~e-ll----~ 291 (497)
T TIGR02026 221 HRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARN--PISVTWGINTRVTD--IVRDAD-IL----H 291 (497)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcC--CCCeEEEEeccccc--ccCCHH-HH----H
Confidence 356677777777776 4799987544322 112222333343332221 01122222222111 001222 22 3
Q ss_pred HHhhcCCCccce-------EEeccCCCCCccHHHHHHHHHHHHHcCcccE----EEccCCCHHHHHHHHHc--CCCeeEe
Q 014906 185 SRRRMDVPCLDM-------LQFHWWDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSN 251 (416)
Q Consensus 185 SL~rLg~dyiDl-------~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~----iGvSn~~~~~l~~~~~~--g~~~~~~ 251 (416)
.+++.|+.++-+ -.+....... ..++..++++.+++.|.... +|+-+-+.+.+++.++. ..+++
T Consensus 292 ~l~~aG~~~v~iGiES~~~~~L~~~~K~~-t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~-- 368 (497)
T TIGR02026 292 LYRRAGLVHISLGTEAAAQATLDHFRKGT-TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD-- 368 (497)
T ss_pred HHHHhCCcEEEEccccCCHHHHHHhcCCC-CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--
Confidence 344455543322 1122222222 36778899999999997443 55667777777776552 23344
Q ss_pred cccccccccchhHHHHHHHHHcCC
Q 014906 252 QVQHSVVDMRPQQKMAELCQLTGV 275 (416)
Q Consensus 252 Q~~~n~l~~~~~~~ll~~~~~~gi 275 (416)
++.++.+...+..++.+.+++.+.
T Consensus 369 ~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 369 QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred ceEEEEecCCCCcHHHHHHHhhcc
Confidence 344566667788888888887654
No 63
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=58.74 E-value=2.1e+02 Score=28.96 Aligned_cols=134 Identities=11% Similarity=0.019 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCC-EEECCCCCCccHHHHHHHHHhhhc---CCCcceEEEEEeeccc-CCCC-CCCCHHHHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRR---ERPPEFLDKVRGLTKW-VPPP-VKMTSSIVRESI 182 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin-~fDTA~~YG~sE~~lG~al~~~~r---~r~~~~~~~~~i~tk~-~~~~-~~~~~~~v~~~l 182 (416)
+.+....+.+++...|++ +++|.-. .+.+.+-++++.... +........+.+---+ .+.. --+.++.++.-=
T Consensus 75 ~~e~~~~~~~~~~~~GvTt~l~t~~t--~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p~ 152 (380)
T TIGR00221 75 SFETLEIMSERLPKSGCTSFLPTLIT--QPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREPD 152 (380)
T ss_pred CHHHHHHHHHHHHhcCeeEEeeeccC--CCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCcC
Confidence 567788888888899998 6666533 222234455544322 1110122222221111 1111 123444444322
Q ss_pred HHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 014906 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (416)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~ 247 (416)
.+-+++|--.+-+.+-+=-.-++ .+...+.++.|+++|.+-++|=||.+.+++.++.+.|..
T Consensus 153 ~~~~~~~~~~~~~~i~~vTlAPE---~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 153 VELFKKFLCEAGGVITKVTLAPE---EDQHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred HHHHHHHHHhcCCCEEEEEECCC---CCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 22222222111122212111122 233567779999999999999999999999999887643
No 64
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=58.36 E-value=61 Score=31.92 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=24.1
Q ss_pred ecCCCCcHHHHHHHhhhhcC-CCCHHHHHHHHH
Q 014906 364 IGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQE 395 (416)
Q Consensus 364 ~G~~s~~~e~l~en~~a~~~-~Lt~ee~~~L~~ 395 (416)
.|..+ +..+...++++.. -+++++++.|-.
T Consensus 270 ~gled--~~~l~~l~~~L~~~G~~e~~i~~i~~ 300 (313)
T COG2355 270 DGLED--VGKLPNLTAALIERGYSEEEIEKIAG 300 (313)
T ss_pred hhhcC--hhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57888 8888888888855 499999888754
No 65
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=58.20 E-value=2.2e+02 Score=29.07 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEee---cccCCCCCCCCHHHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL---TKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin-~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~---tk~~~~~~~~~~~~v~~~le 183 (416)
.+.+.-.+=++.|++.|-. ..|-+. .|+-..+=-+.|+..+-+ +-++-+. .+......+++++.+.+.+|
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~s~vp-----vGTVPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDAVPVP-----VGTVPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHcCCCC-----ccCccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 3555566668999999976 445443 366344322333332221 1011111 01112334688999998888
Q ss_pred HHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccchh
Q 014906 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 263 (416)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~ 263 (416)
+..+. -+|.+-||.- -..+.++.++++|+ ..|+-+-...-+....... -+-||+. ..-
T Consensus 148 ~qa~d----GVDfmTiH~G--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~-------~~ENPly-e~f 205 (423)
T TIGR00190 148 KQAKD----GVDFMTIHAG--------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH-------HKENPLY-KNF 205 (423)
T ss_pred HHHHh----CCCEEEEccc--------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc-------CCcCchH-HHH
Confidence 87663 4788889963 24667789999985 5777777776666554421 2456653 344
Q ss_pred HHHHHHHHHcCCeEE
Q 014906 264 QKMAELCQLTGVKLI 278 (416)
Q Consensus 264 ~~ll~~~~~~gi~vi 278 (416)
+++++.|+++++.+-
T Consensus 206 D~lLeI~~~yDVtlS 220 (423)
T TIGR00190 206 DYILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHHHhCeeee
Confidence 589999999999875
No 66
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=58.12 E-value=84 Score=29.08 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=50.3
Q ss_pred hhcCCCccceEEec-cCCCCCccHHHHHHHHHHHHHcCc-ccEEEcc-CCCHHHHHHHHHcCCCeeEecccccccccchh
Q 014906 187 RRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 263 (416)
Q Consensus 187 ~rLg~dyiDl~~lH-~pd~~~~~~~e~~~aL~~l~~~Gk-Ir~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~ 263 (416)
..+|.||+=+++.- +|-. - ..+...++.+.-. ++.+||. |.+.+.+.++++. ..++.+|++-.. .
T Consensus 19 ~~~gad~iG~If~~~SpR~--V----s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~VQlHG~e-----~ 86 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRY--V----SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAVQLHGDE-----D 86 (208)
T ss_pred HHcCCCEEEEEEcCCCCCc--C----CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEEEECCCC-----C
Confidence 34899998887554 3322 1 2333344444444 8899987 7788999998875 478999987662 2
Q ss_pred HHHHHHHHHc-CCeEE
Q 014906 264 QKMAELCQLT-GVKLI 278 (416)
Q Consensus 264 ~~ll~~~~~~-gi~vi 278 (416)
.+.++..++. ++.|+
T Consensus 87 ~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 87 PEYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHHhhcCCceE
Confidence 2444445544 35555
No 67
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=57.39 E-value=2e+02 Score=28.31 Aligned_cols=110 Identities=7% Similarity=0.040 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccC---------CCHHHHHHHHHc
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILEN 244 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn---------~~~~~l~~~~~~ 244 (416)
+.+.+.+.++..-+..++ .-+.|=.=|+.........+.++.+++.|.|+.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I---~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEI---WEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCCc---cEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 445555555543333332 22334333332222345667778888888887555543 355666666666
Q ss_pred CCCeeEecccccccc--cchhHHHHHHHHHcCCeEEEeccccCcc
Q 014906 245 GIPVVSNQVQHSVVD--MRPQQKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 245 g~~~~~~Q~~~n~l~--~~~~~~ll~~~~~~gi~via~spL~~G~ 287 (416)
|.. ..+-++.|-.. ...-...++.+++.|+.+...++|..|.
T Consensus 197 g~~-v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKT-VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCc-EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 633 23334433110 0111256778888999999999998874
No 68
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=57.11 E-value=1.7e+02 Score=27.87 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceE-EeccCCCCCccHH----HHHHHHHHHHHc-CcccEEEccCCCHHHHHHHHHcC
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSNPGYL----DALNHLTDLKEE-GKIKTVALTNFDTERLRIILENG 245 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~-~lH~pd~~~~~~~----e~~~aL~~l~~~-GkIr~iGvSn~~~~~l~~~~~~g 245 (416)
..+++.+.+.+++.+ .-|.++||+= .--+|+......+ .....++.+++. +. -+.+=+++++.++.+++.|
T Consensus 19 ~~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G 95 (257)
T TIGR01496 19 FLSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAG 95 (257)
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcC
Confidence 357777777776654 5689999993 1122433211122 255566666665 43 3788899999999999987
Q ss_pred CCeeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 246 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 246 ~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
.++ .|-+ +... .+++++.+++.|..++.+.
T Consensus 96 ~~i-INsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 96 ADI-INDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CCE-EEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 442 3322 2221 3478899999999999965
No 69
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.16 E-value=1.1e+02 Score=29.16 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=61.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCee
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVV 249 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk-Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (416)
..++.+.-.+-++. |.++|++.|.+-. |... .+.+++.+.+.+.++ .+-.++...+.+.++.+.+.|++..
T Consensus 17 ~~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i 88 (262)
T cd07948 17 AFFDTEDKIEIAKA-LDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGV 88 (262)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEE
Confidence 35676766666665 8999988888773 5332 233444455544443 4445666778889999998876533
Q ss_pred Eecccccc------cccchh------HHHHHHHHHcCCeEEEec
Q 014906 250 SNQVQHSV------VDMRPQ------QKMAELCQLTGVKLITYG 281 (416)
Q Consensus 250 ~~Q~~~n~------l~~~~~------~~ll~~~~~~gi~via~s 281 (416)
.+-+..|. +.+..+ .+++++++++|+.|...-
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 22222111 112222 256788999998766544
No 70
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=55.68 E-value=2.1e+02 Score=28.09 Aligned_cols=119 Identities=10% Similarity=0.166 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCCCCc---cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHH
Q 014906 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le 183 (416)
..+.++...+++.+.+.|+..|.-+. |. ..+ +-+.++..... . .+ ..+.+.|.- ..+.+ .-
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tG--GEPllr~d-l~~li~~i~~~-~-~l-~~i~itTNG---------~ll~~-~~ 107 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTG--GEPLVRRG-CDQLVARLGKL-P-GL-EELSLTTNG---------SRLAR-FA 107 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--cCCCcccc-HHHHHHHHHhC-C-CC-ceEEEEeCh---------hHHHH-HH
Confidence 36778999999999999998775432 31 111 22333332211 1 11 123334431 11222 33
Q ss_pred HHHhhcCCCccceEEeccCCCC-------CccHHHHHHHHHHHHHcCc----ccEEEccCCCHHHHHHHH
Q 014906 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIIL 242 (416)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~-------~~~~~e~~~aL~~l~~~Gk----Ir~iGvSn~~~~~l~~~~ 242 (416)
+.|...|++++- +.|+..++. ...++.+++.++.+++.|. |..+.+...+.+++.+++
T Consensus 108 ~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~ 176 (329)
T PRK13361 108 AELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLV 176 (329)
T ss_pred HHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHH
Confidence 456667777665 345544321 1236677888887777764 122333334444444444
No 71
>PRK13796 GTPase YqeH; Provisional
Probab=55.62 E-value=2.1e+02 Score=28.77 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHHcC---CCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~G---in~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~ 184 (416)
.++++..++++..-+.- +-.+|..+.-+.-...+.+... ... . +.+.+|..-.+.....+.+.+-++.
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-v----iLViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-V----LLVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-E----EEEEEchhhCCCccCHHHHHHHHHH
Confidence 34566666776666555 5568876654442222333321 221 2 3347775322223345666666676
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHH
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~ 242 (416)
..+.+|....|++++-.-. ..++.+.++.+.+..+.+.+-.+|.+|.+-..|-..+
T Consensus 125 ~~k~~g~~~~~v~~vSAk~--g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQK--GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred HHHhcCCCcCcEEEEECCC--CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 6777887656777765543 2347888988888888889999999999987776654
No 72
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=55.51 E-value=2.2e+02 Score=28.17 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCc---------cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGP---------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~---------sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~ 179 (416)
+.++..+.++.+++.|++.|=.--..|. ..+.+ +++++.-.+.. .+.++ .+ ..++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~-~l~vD--------an-~~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDV-DLMLD--------CY-MSWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCC-cEEEE--------CC-CCCCHHHHH
Confidence 5566777888888999997753211111 11111 22222111111 22221 11 124555544
Q ss_pred HHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccc
Q 014906 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (416)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l 258 (416)
+-++ .|+. +|++++-.|-.. +-++.+.+|+++..|. +.|=|.++...++++++.+ -.+++|+..+..
T Consensus 189 ~~~~-~l~~-----~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~ 256 (341)
T cd03327 189 KMAR-ALEK-----YELRWIEEPLIP-----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWV 256 (341)
T ss_pred HHHH-Hhhh-----cCCccccCCCCc-----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCcccc
Confidence 3332 2233 456666666432 2366778888887776 6667788999999999865 478888887653
Q ss_pred cc-chhHHHHHHHHHcCCeEEEec
Q 014906 259 DM-RPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 259 ~~-~~~~~ll~~~~~~gi~via~s 281 (416)
-- ..-..+...|+++|+.++..+
T Consensus 257 GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 257 GGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CCHHHHHHHHHHHHHcCCeecccc
Confidence 21 123479999999999988654
No 73
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=54.52 E-value=2.3e+02 Score=28.08 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=53.9
Q ss_pred HHhhcCCCccceEEecc-CCCCCccHHHHHHHHHHHHHcCcccE-EEccCC---CHHHHHHHHHc--CCCeeEecccccc
Q 014906 185 SRRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILEN--GIPVVSNQVQHSV 257 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~-pd~~~~~~~e~~~aL~~l~~~GkIr~-iGvSn~---~~~~l~~~~~~--g~~~~~~Q~~~n~ 257 (416)
.-+.+|.|+||+-+.-. |+..+...++....++...+.=.+=- |..|.. +++.+++.++. |-++-.+-+.
T Consensus 84 q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat--- 160 (319)
T PRK04452 84 CVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE--- 160 (319)
T ss_pred HHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC---
Confidence 33468999999875332 33212223444444444433322222 665533 78889888873 3234333222
Q ss_pred cccchhHHHHHHHHHcCCeEEEeccc
Q 014906 258 VDMRPQQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 258 l~~~~~~~ll~~~~~~gi~via~spL 283 (416)
...-+.+.+.|+++|..|++.+|.
T Consensus 161 --~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 --EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred --HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 223457999999999999998854
No 74
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.33 E-value=1.6e+02 Score=28.08 Aligned_cols=99 Identities=10% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEecc--CCCC------CccHHHHHHHHHHHHHc-CcccEEEccCCC--------
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW--WDYS------NPGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 234 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~--pd~~------~~~~~e~~~aL~~l~~~-GkIr~iGvSn~~-------- 234 (416)
+.+...++..+... ..+|++. ++.|-. |... ......+.+.++.+++. |....+|+..|.
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~~--iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~ 145 (274)
T cd00537 69 DRNRIELQSILLGA-HALGIRN--ILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPS 145 (274)
T ss_pred CCCHHHHHHHHHHH-HHCCCCe--EEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCC
Confidence 34667777777665 6667653 444422 1111 11233455555666554 245578887663
Q ss_pred H-HHHHHHH---HcCCCeeEecccccccccchhHHHHHHHHHcCCe
Q 014906 235 T-ERLRIIL---ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (416)
Q Consensus 235 ~-~~l~~~~---~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~ 276 (416)
. ..+..+. +.|..+.+-|.-|++ ..-.+.++.|++.|+.
T Consensus 146 ~~~~~~~L~~Ki~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~ 188 (274)
T cd00537 146 LEEDIKRLKRKVDAGADFIITQLFFDN---DAFLRFVDRCRAAGIT 188 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEeecccccH---HHHHHHHHHHHHcCCC
Confidence 1 2333333 357788888988885 3445788899999864
No 75
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=54.22 E-value=70 Score=29.50 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=41.2
Q ss_pred hcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEeccccc
Q 014906 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (416)
Q Consensus 188 rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n 256 (416)
.+|+||+=+++... .+..- ..+....+.... .+.+..+||. |-+++.+.++++. ..++++|++-+
T Consensus 21 ~~Gad~iGfI~~~~-S~R~V-~~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg~ 86 (210)
T PRK01222 21 ELGADAIGFVFYPK-SPRYV-SPEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHGD 86 (210)
T ss_pred HcCCCEEEEccCCC-CCCcC-CHHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 48999999874332 11111 123333333322 3568999987 7788999888875 46899998764
No 76
>PRK13753 dihydropteroate synthase; Provisional
Probab=54.03 E-value=2.2e+02 Score=27.67 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEE-eccCCCCCcc----HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCC
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~-lH~pd~~~~~----~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~ 246 (416)
.++.+.+.+..++.+ .-|.|-||+=- -..|+...-. ...+...++.+++.+. -|.|-+|.++.++.+++.|.
T Consensus 21 ~~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGa 97 (279)
T PRK13753 21 RLDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGV 97 (279)
T ss_pred CCCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCC
Confidence 356677777777754 55778888743 2235432211 3334567788887753 48899999999999999886
Q ss_pred CeeEecccccccccchhHHHHHHHHHcCCeEEEecccc
Q 014906 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 284 (416)
Q Consensus 247 ~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~ 284 (416)
.+. |=+ +-+ ....+.+.+.+.+++++.+-..+
T Consensus 98 diI-NDV--sg~---~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 98 GYL-NDI--QGF---PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CEE-EeC--CCC---CchHHHHHHHHcCCCEEEEecCC
Confidence 542 222 222 24477888999999999877543
No 77
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=53.72 E-value=37 Score=31.24 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=43.2
Q ss_pred HhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEeccccc
Q 014906 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (416)
Q Consensus 186 L~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n 256 (416)
...+|+||+=+++... .+..-.. +....+.+.. .+.++.+||. |-+++.+.++++. ..++++|++-+
T Consensus 17 ~~~~GaD~iGfIf~~~-SpR~V~~-~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEK-SKRHQTI-TQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCC-CcccCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECCC
Confidence 3449999999974332 1111112 2333333332 3568899996 8899999998875 46899998764
No 78
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=53.10 E-value=1.1e+02 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhh
Q 014906 342 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 381 (416)
Q Consensus 342 g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~ 381 (416)
..|-.++||+|++.++.-..++.|+.-+..+|.-.|+..+
T Consensus 71 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 71 DTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 4566788999999887656778898887888888888765
No 79
>PRK15108 biotin synthase; Provisional
Probab=52.98 E-value=2.5e+02 Score=28.02 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccC--CCHHHHHHHHHcCCCeeE
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVVS 250 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn--~~~~~l~~~~~~g~~~~~ 250 (416)
++++.+.+.++. ...+|+..+- ....+.++....++...+.+..+++.|. .+.+|+ .+.+.++++.+.|++-..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888888875 5568988873 3333322222235667777788887775 344554 678999999987754222
Q ss_pred eccc-----ccccc--cchh--HHHHHHHHHcCCeEEEeccccCc
Q 014906 251 NQVQ-----HSVVD--MRPQ--QKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 251 ~Q~~-----~n~l~--~~~~--~~ll~~~~~~gi~via~spL~~G 286 (416)
+-++ |.-+. ...+ -+.++.+++.|+.+.+--.++-|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~Glg 196 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLG 196 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCC
Confidence 2111 11111 1111 26788888899977655555544
No 80
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=52.91 E-value=64 Score=32.29 Aligned_cols=146 Identities=12% Similarity=0.044 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhh
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~r 188 (416)
+.++..+.+..+.+.|++.|=.=- .+.+. ++++.-.+.. .+.+ ..+ ..++.+...+-+++ |+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-----~~~v~-avre~~G~~~-~l~v--------DaN-~~w~~~~A~~~~~~-l~- 187 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-----PKLFE-AVREKFGFEF-HLLH--------DVH-HRLTPNQAARFGKD-VE- 187 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-----HHHHH-HHHhccCCCc-eEEE--------ECC-CCCCHHHHHHHHHH-hh-
Confidence 456677778888899999873210 12222 2222111111 1211 111 12465554433333 22
Q ss_pred cCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHH
Q 014906 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKM 266 (416)
Q Consensus 189 Lg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~l 266 (416)
-++++++-.|-.. +-++.+.+|++...+. +.|=|-+++..++.+++.+ -++++|+.....-- ..-..+
T Consensus 188 ----~~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 188 ----PYRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred ----hcCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHH
Confidence 2466667666532 2367778888887765 7788888999999998865 47888888765321 122479
Q ss_pred HHHHHHcCCeEEEecc
Q 014906 267 AELCQLTGVKLITYGT 282 (416)
Q Consensus 267 l~~~~~~gi~via~sp 282 (416)
.+.|+++|+.++..+.
T Consensus 258 a~~A~~~gi~~~~h~~ 273 (361)
T cd03322 258 ADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHcCCeeeccCC
Confidence 9999999999987643
No 81
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.52 E-value=2.2e+02 Score=26.98 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (416)
+.+.+......+-..+-+++++|-|=.+..+....++..|++++-+.|+++|-+-. =..+-++-..+++.+.| ...+
T Consensus 72 c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~akrL~d~G--caav 148 (247)
T PF05690_consen 72 CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKRLEDAG--CAAV 148 (247)
T ss_dssp -SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HHHHHHHHHTT---SEB
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHCC--CCEE
Confidence 56888888899999999999999888777776666789999999999999997643 34455787888888765 4455
Q ss_pred cccccccccc----hhHHHHHHHHHcCCeEEEec
Q 014906 252 QVQHSVVDMR----PQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 252 Q~~~n~l~~~----~~~~ll~~~~~~gi~via~s 281 (416)
+.--+++--. ....+-..+++.++.||.-.
T Consensus 149 MPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 149 MPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp EEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 5554544211 11234455667799999755
No 82
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.17 E-value=47 Score=30.55 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHcCCCeeEec
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 252 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g~~~~~~Q 252 (416)
+++...+.++. |-+-|+.-|.+=+ - ++ +.++.+++++++..=-.||..+. +.++++++++.|-+|.
T Consensus 14 ~~~~a~~ia~a-l~~gGi~~iEit~---~---tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--- 80 (201)
T PRK06015 14 DVEHAVPLARA-LAAGGLPAIEITL---R---TP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--- 80 (201)
T ss_pred CHHHHHHHHHH-HHHCCCCEEEEeC---C---Cc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE---
Confidence 44555444443 4456665555432 1 22 34555566655533346888765 7899999999886553
Q ss_pred ccccccccchhHHHHHHHHHcCCeEEE
Q 014906 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 253 ~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
.++ ....+++++|+++|+.++.
T Consensus 81 --vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 --VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred --ECC---CCCHHHHHHHHHcCCCEeC
Confidence 233 3455899999999998883
No 83
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=51.01 E-value=2.5e+02 Score=27.58 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEECCC-C-CCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADA-GLTTFDMAD-H-YGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~-Gin~fDTA~-~-YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~ 184 (416)
.+.++..++++...+. ||+.+--+. . --.+...|.+.++....- ..+..+.+.|+.... .+..+.+.+=+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i---~~v~~iri~Tr~~v~----~p~rit~ell~ 191 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAI---DHVKIVRFHTRVPVA----DPARVTPALIA 191 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhC---CCccEEEEeCCCccc----ChhhcCHHHHH
Confidence 3556777788776644 887542111 1 001222345555543321 112234455653211 12222333334
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 224 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk 224 (416)
.|++.|.. ..+.+|....... .++++++++.|++.|.
T Consensus 192 ~L~~~g~~--v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 192 ALKTSGKT--VYVALHANHAREL-TAEARAACARLIDAGI 228 (321)
T ss_pred HHHHcCCc--EEEEecCCChhhc-CHHHHHHHHHHHHcCC
Confidence 55556632 3567777544322 5678888888888885
No 84
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=50.76 E-value=1.6e+02 Score=29.37 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccceEEeccC-------CCCCccHHHHHHHHHHHHH-cCcccEEEcc---CCCHHHH
Q 014906 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKE-EGKIKTVALT---NFDTERL 238 (416)
Q Consensus 170 ~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~p-------d~~~~~~~e~~~aL~~l~~-~GkIr~iGvS---n~~~~~l 238 (416)
.+.++.+.+.+-++. |.+.|+++|.+-..-.. ....... ++.++.+.+ ....+...+. ..+.+.+
T Consensus 19 ~~~f~~~~~~~i~~~-L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~---~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 19 RHQYTLEQVRAIARA-LDAAGVPVIEVTHGDGLGGSSFNYGFGAHTD---EEYIEAAAEVVKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CCccCHHHHHHHHHH-HHHcCCCEEEeecCCCCCCccccCCCCCCCH---HHHHHHHHHhCCCCEEEEEeccCcccHHHH
Confidence 456787877776666 88999999998632110 1101112 334444422 2334544433 2356778
Q ss_pred HHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEe
Q 014906 239 RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 239 ~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~ 280 (416)
+.+.+.|++. +.+-.+.-+-..-.+.+++++++|..+...
T Consensus 95 ~~a~~~gvd~--iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDAGVRV--VRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHcCCCE--EEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 8888776543 333333222223347888899999877654
No 85
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.18 E-value=1.7e+02 Score=29.06 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEe--------cc-CCCCCccHHHHHHHHHHHHHcCcccEEEcc---CCCHHHH
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQF--------HW-WDYSNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERL 238 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~l--------H~-pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS---n~~~~~l 238 (416)
+.++.+.+.+-++. |.+.|+++|++-.. +. +.. .+ ..+.++++.+..+. .+...+. ..+.+.+
T Consensus 19 ~~f~~~~~~~ia~~-Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~-~~e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl 93 (333)
T TIGR03217 19 HQFTIEQVRAIAAA-LDEAGVDAIEVTHGDGLGGSSFNYGFSA-HT-DLEYIEAAADVVKR--AKVAVLLLPGIGTVHDL 93 (333)
T ss_pred CcCCHHHHHHHHHH-HHHcCCCEEEEecCCCCCCccccCCCCC-CC-hHHHHHHHHHhCCC--CEEEEEeccCccCHHHH
Confidence 45676766665555 77788888887511 11 111 11 12223333222222 3333222 1256777
Q ss_pred HHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEE
Q 014906 239 RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 239 ~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
+.+.+.|++. +.+-.+.-+-..-.+.+++++++|..+..
T Consensus 94 ~~a~~~gvd~--iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 94 KAAYDAGART--VRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHHHHCCCCE--EEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 7777766433 33333321112234677788888876654
No 86
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=50.15 E-value=45 Score=33.47 Aligned_cols=87 Identities=9% Similarity=0.012 Sum_probs=59.1
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~ 271 (416)
+++.++-.|-.. +-++.+.+|++...+. +.|=|-++...+..+++.+ -++++|+.....-- ..-..+...|+
T Consensus 213 ~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~~GGi~~~~~i~~lA~ 286 (368)
T TIGR02534 213 AGVELIEQPTPA-----ENREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTKSGGLLESKKIAAIAE 286 (368)
T ss_pred cChhheECCCCc-----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccccCCHHHHHHHHHHHH
Confidence 355556666432 2366667777776665 7788888999999998864 47778887665311 12237899999
Q ss_pred HcCCeEEEeccccCc
Q 014906 272 LTGVKLITYGTVMGG 286 (416)
Q Consensus 272 ~~gi~via~spL~~G 286 (416)
.+|+.++..+.+.+|
T Consensus 287 ~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 287 AAGIALYGGTMLEGP 301 (368)
T ss_pred HcCCceeeecchhhH
Confidence 999999876554443
No 87
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=49.95 E-value=48 Score=33.13 Aligned_cols=84 Identities=12% Similarity=0.070 Sum_probs=56.5
Q ss_pred ceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHH
Q 014906 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 272 (416)
Q Consensus 195 Dl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~ 272 (416)
++.+|-.|-+. +.++.+.+|+++..|. +.|=|-++.+.++.+++.+ -++.+|+....+-- ..-..+...|++
T Consensus 215 ~~~~iEeP~~~-----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~ 288 (365)
T cd03318 215 GVELIEQPVPR-----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEA 288 (365)
T ss_pred CcceeeCCCCc-----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHH
Confidence 44555555432 2367778888876665 6677778999999998865 36777877654311 122478999999
Q ss_pred cCCeEEEecccc
Q 014906 273 TGVKLITYGTVM 284 (416)
Q Consensus 273 ~gi~via~spL~ 284 (416)
+|+.++..+-..
T Consensus 289 ~gi~~~~~~~~~ 300 (365)
T cd03318 289 AGIALYGGTMLE 300 (365)
T ss_pred cCCceeecCcch
Confidence 999988654333
No 88
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.04 E-value=2.6e+02 Score=27.05 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHcC-CCEEEC-------C---CCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHH
Q 014906 109 DRDDAVDAMLRYADAG-LTTFDM-------A---DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~G-in~fDT-------A---~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~ 177 (416)
+.++..++.+.+.+.| +..||- + ..|+...+++-+.++.....- .+-+.+|+. +. .+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~----~~-----~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLT----PN-----VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcC----CC-----chh
Confidence 5677888888888898 999976 2 234455667777777665431 122223332 22 122
Q ss_pred HHHHHHHHHhhcCCCccceEE-eccC--CCC--------------Ccc-HHHHHHHHHHHHHcCcccEEEccCC-CHHHH
Q 014906 178 VRESIDVSRRRMDVPCLDMLQ-FHWW--DYS--------------NPG-YLDALNHLTDLKEEGKIKTVALTNF-DTERL 238 (416)
Q Consensus 178 v~~~le~SL~rLg~dyiDl~~-lH~p--d~~--------------~~~-~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l 238 (416)
+.+ +-+.|+..|+|.|++.= ++.. +.. .+. ..-.++.+.++++.=.|--||+.+. +++.+
T Consensus 171 ~~~-~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IVE-IAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HHH-HHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 222 22346678888876531 0110 000 000 1124666777777656889999986 78999
Q ss_pred HHHHHcCCCeeEecccccccc-c----chhHHHHHHHHHcCC
Q 014906 239 RIILENGIPVVSNQVQHSVVD-M----RPQQKMAELCQLTGV 275 (416)
Q Consensus 239 ~~~~~~g~~~~~~Q~~~n~l~-~----~~~~~ll~~~~~~gi 275 (416)
.+++..| .+.+|+-=-++. + ...+++-.++.++|.
T Consensus 250 ~~~l~aG--Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG--ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC--CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9998877 456665433221 1 122356677777664
No 89
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=48.99 E-value=1.1e+02 Score=28.43 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCc---c-H--HHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---s-E--~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~ 181 (416)
.++++...+.+.+.++|..|+=|+..|+. + | +++.+.+ .++ + .+|..- .. + +.+.+.+-
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v----~~~---v--~IKaaG----Gi-r-t~~~a~~~ 193 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTV----GDT---I--GVKASG----GV-R-TAEDAIAM 193 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHh----ccC---C--eEEEeC----CC-C-CHHHHHHH
Confidence 46678889999999999999999988852 1 2 2233333 221 1 233221 11 1 77889999
Q ss_pred HHHHHhhcCCCc
Q 014906 182 IDVSRRRMDVPC 193 (416)
Q Consensus 182 le~SL~rLg~dy 193 (416)
++.--.|+|+++
T Consensus 194 i~aGa~riGts~ 205 (211)
T TIGR00126 194 IEAGASRIGASA 205 (211)
T ss_pred HHHhhHHhCcch
Confidence 999999999875
No 90
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=48.98 E-value=3.1e+02 Score=28.74 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHH----cCcccEEEcc--CCCHHHHHHHHHcC
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 245 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~----~GkIr~iGvS--n~~~~~l~~~~~~g 245 (416)
.++.+.|.+.++. ++++|...+-|+.=..| ....++-..+.++.+++ .|.++.|+|+ ..+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p--~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALVAGEDP--PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC--CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 4688999999986 57799877766532222 12236666666677665 5677766664 55789999999988
Q ss_pred CC-eeEecccccc-----ccc-----chh--HHHHHHHHHcCCeEEEeccc
Q 014906 246 IP-VVSNQVQHSV-----VDM-----RPQ--QKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 246 ~~-~~~~Q~~~n~-----l~~-----~~~--~~ll~~~~~~gi~via~spL 283 (416)
+. ...+|=-||. +++ ..+ -..++.+++.|+.-++.+.|
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 64 4555545542 111 112 26788899999875554444
No 91
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.45 E-value=62 Score=30.66 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCC------------C-----C
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP------------P-----P 170 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~------------~-----~ 170 (416)
++.++-.++.+++-+.||.||=|... ++- -+++.+..-+ -+|+++--.. . .
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd----~~s-~d~l~~~~~~-------~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFD----EES-VDFLEELGVP-------AYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-S----HHH-HHHHHHHT-S-------EEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCC----HHH-HHHHHHcCCC-------EEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 57789999999999999999976654 221 1223332221 2333321000 0 0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCC-ccHHHHHHHHHHHHHcCcccEEEccCCCHH
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDTE 236 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~-~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~ 236 (416)
-.-+.+.|.++++...++- .-|+.++|...... +.-+--|..|..|++.=- --||+|.|+..
T Consensus 121 G~stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp TT--HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred CCCCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 0225577777777653433 37899999864322 212224556666664323 57799998764
No 92
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=48.20 E-value=3.1e+02 Score=27.70 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=33.0
Q ss_pred HHHHHhhcC-CCccceEEeccCCCCCccHH---HHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcC
Q 014906 182 IDVSRRRMD-VPCLDMLQFHWWDYSNPGYL---DALNHLTDLKEEGKIKTVALT-NFDTERLRIILENG 245 (416)
Q Consensus 182 le~SL~rLg-~dyiDl~~lH~pd~~~~~~~---e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g 245 (416)
+-+.|+..| +||||+.--++......... -........+....+--+.+. -+++++.+++++.|
T Consensus 242 la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 242 LAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred HHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 344566677 67777776555211101011 122333445555555555555 35777777777765
No 93
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=47.88 E-value=28 Score=23.91 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcC
Q 014906 334 LKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFML 383 (416)
Q Consensus 334 l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~ 383 (416)
|++||+..|+|++-+. .+|+.+.- +...+ .+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TVS--r~ln~~~~----vs~~t--r~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVS--RVLNGPPR----VSEET--RERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHHH--HHHTTCSS----STHHH--HHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHHH--HHHhCCCC----CCHHH--HHHHHHHHHHHCC
Confidence 6789999999988876 33444322 35555 7888888777665
No 94
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=47.77 E-value=2.4e+02 Score=26.27 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=77.3
Q ss_pred ccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEE--------
Q 014906 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVR-------- 161 (416)
Q Consensus 90 ~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~-------- 161 (416)
.+|.++-|..+ +.+++.++ ++.|...+..+...-..-.++-++.+..+.++. .+.+.++
T Consensus 71 ~~pv~~~GGI~--------s~~d~~~~----l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i-~~~ld~k~~~~~~~~ 137 (243)
T cd04731 71 FIPLTVGGGIR--------SLEDARRL----LRAGADKVSINSAAVENPELIREIAKRFGSQCV-VVSIDAKRRGDGGYE 137 (243)
T ss_pred CCCEEEeCCCC--------CHHHHHHH----HHcCCceEEECchhhhChHHHHHHHHHcCCCCE-EEEEEeeecCCCceE
Confidence 35666555532 33444444 446888887766543344556676666543322 2223222
Q ss_pred eecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCC--CccHHHHHHHHHHHHHcCcccEEEccCC-CHHHH
Q 014906 162 GLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--NPGYLDALNHLTDLKEEGKIKTVALTNF-DTERL 238 (416)
Q Consensus 162 i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~--~~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l 238 (416)
+.++.|......+...+. +.++.+|+ |.+.+|..+.. ..++ -|+.+.++++.-.+.-+..... +++.+
T Consensus 138 v~~~~~~~~~~~~~~~~~----~~l~~~G~---d~i~v~~i~~~g~~~g~--~~~~i~~i~~~~~~pvia~GGi~~~~di 208 (243)
T cd04731 138 VYTHGGRKPTGLDAVEWA----KEVEELGA---GEILLTSMDRDGTKKGY--DLELIRAVSSAVNIPVIASGGAGKPEHF 208 (243)
T ss_pred EEEcCCceecCCCHHHHH----HHHHHCCC---CEEEEeccCCCCCCCCC--CHHHHHHHHhhCCCCEEEeCCCCCHHHH
Confidence 233333222122222222 33445665 45556654321 1111 2555566666656666666654 67888
Q ss_pred HHHHHc-CCCeeEeccccccccc-chhHHHHHHHHHc
Q 014906 239 RIILEN-GIPVVSNQVQHSVVDM-RPQQKMAELCQLT 273 (416)
Q Consensus 239 ~~~~~~-g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~~ 273 (416)
.++++. |+. .+.+---+.+. ....+++++|+++
T Consensus 209 ~~~l~~~g~d--gv~vg~al~~~~~~~~~~~~~~~~~ 243 (243)
T cd04731 209 VEAFEEGGAD--AALAASIFHFGEYTIAELKEYLAER 243 (243)
T ss_pred HHHHHhCCCC--EEEEeHHHHcCCCCHHHHHHHHhhC
Confidence 888774 543 33332111111 1223566777654
No 95
>PLN02428 lipoic acid synthase
Probab=47.39 E-value=3.1e+02 Score=27.53 Aligned_cols=160 Identities=19% Similarity=0.269 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCC----C--CccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADH----Y--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~----Y--G~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~ 181 (416)
.+.++..++.+.+.+.|++++=-... | +..+ .+.+.++....... .+.+.+ .+ +. ...+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P-~i~Ie~--L~---pd-f~~d------- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKP-EILVEA--LV---PD-FRGD------- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCC-CcEEEE--eC---cc-ccCC-------
Confidence 45667778888888999886533211 2 1223 34566665544322 333322 11 11 1112
Q ss_pred HHHHHhhcCCCccceEEeccCCC----------CCccHHHHHHHHHHHHHc--Cccc----EEEccCCCHHHHHHHHHc-
Q 014906 182 IDVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIK----TVALTNFDTERLRIILEN- 244 (416)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~pd~----------~~~~~~e~~~aL~~l~~~--GkIr----~iGvSn~~~~~l~~~~~~- 244 (416)
++.|+.|.-.-+|.| -|+++. ....+++.++.|+.+++. |..- -+|+ +-+.+++.+.++.
T Consensus 195 -~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 195 -LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred -HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 222222322225553 366653 112478899999999998 7663 2566 4566776665541
Q ss_pred -CCCeeEecc-cc---cc----ccc--chh--HHHHHHHHHcCCeEEEeccccC
Q 014906 245 -GIPVVSNQV-QH---SV----VDM--RPQ--QKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 245 -g~~~~~~Q~-~~---n~----l~~--~~~--~~ll~~~~~~gi~via~spL~~ 285 (416)
.+.++++.+ +| +. +.+ .++ +.+-+++.+.|...++-+||-.
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 223333332 22 10 111 122 3677888899999999998865
No 96
>PRK07329 hypothetical protein; Provisional
Probab=46.97 E-value=2.5e+02 Score=26.35 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCCccceEEeccCCCC--------CccHHHHH----HHHHHHHHcC-cccEEEcc----------CCC--
Q 014906 180 ESIDVSRRRMDVPCLDMLQFHWWDYS--------NPGYLDAL----NHLTDLKEEG-KIKTVALT----------NFD-- 234 (416)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~pd~~--------~~~~~e~~----~aL~~l~~~G-kIr~iGvS----------n~~-- 234 (416)
..+++-|.+...||+ +..+|+.+.. ..+.++.+ +.+.++.+.+ ++..+|== ..+
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 445556666778888 8889985321 11233444 6777777776 66666511 111
Q ss_pred H------HHHHHHHHcCCCeeEeccccc-ccccchhHHHHHHHHHcCCeEEEec
Q 014906 235 T------ERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 235 ~------~~l~~~~~~g~~~~~~Q~~~n-~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
+ +.++.+.+.++.+.+|--.+. ......-..+++.|++.|+..+..+
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~g 215 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIG 215 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEec
Confidence 1 122333345666666653321 1111111356888888887645444
No 97
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.83 E-value=71 Score=29.43 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHcCCCeeEec
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 252 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g~~~~~~Q 252 (416)
+++...+.+ +.|-+-|+..+.+=+ - .+ +.++.+++++++..=-.||..+. ++++++.+++.|-+|.
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~---~---t~---~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL---R---TP---VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC---C---Cc---cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 445444444 445667766555442 1 22 34555566665543356888875 7899999999886654
Q ss_pred ccccccccchhHHHHHHHHHcCCeEEE
Q 014906 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 253 ~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
.++ ....+++++|+++|+.++.
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 233 3355899999999998874
No 98
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=46.72 E-value=1.1e+02 Score=27.73 Aligned_cols=102 Identities=19% Similarity=0.178 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCH--HHHHHHHHcCCCeeEecc
Q 014906 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 253 (416)
Q Consensus 176 ~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~--~~l~~~~~~g~~~~~~Q~ 253 (416)
+.....+...++..+...-.+++--.............+.+..+++.|- .+++.+|+. ..+..+.. ++|+++-+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEEE
Confidence 4456777788888887642333222211112225568899999999998 677777643 44444443 45666666
Q ss_pred ccccccc--------chhHHHHHHHHHcCCeEEEec
Q 014906 254 QHSVVDM--------RPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 254 ~~n~l~~--------~~~~~ll~~~~~~gi~via~s 281 (416)
..+.+.. ..-+.++..|+..|+.+|+-.
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 6554422 112368889999999999844
No 99
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.43 E-value=2.6e+02 Score=26.30 Aligned_cols=85 Identities=9% Similarity=0.109 Sum_probs=45.9
Q ss_pred hhcCCCccceEEeccCCC--CCccHHHHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHc-CCCeeEecccccccccch
Q 014906 187 RRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILEN-GIPVVSNQVQHSVVDMRP 262 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~--~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~-g~~~~~~Q~~~n~l~~~~ 262 (416)
..+| +|-+.+|..+. ...++ -|+.+.++.+.-.+.-|.-... +.+.+.++++. |+.-..+=--++-- .-.
T Consensus 163 ~~~g---~~~ii~~~i~~~g~~~g~--d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~-~~~ 236 (253)
T PRK02083 163 EELG---AGEILLTSMDRDGTKNGY--DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG-EIT 236 (253)
T ss_pred HHcC---CCEEEEcCCcCCCCCCCc--CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC-CCC
Confidence 3456 45567766432 22222 2566666666655666665543 67888887763 54322221112211 123
Q ss_pred hHHHHHHHHHcCCeE
Q 014906 263 QQKMAELCQLTGVKL 277 (416)
Q Consensus 263 ~~~ll~~~~~~gi~v 277 (416)
..+++++|++.||.+
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 237 IGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHHCCCcc
Confidence 347889999988864
No 100
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=46.35 E-value=66 Score=30.30 Aligned_cols=74 Identities=16% Similarity=0.098 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcC
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g 245 (416)
-+.+.+......+-+.+-+++++|-|=.|-.++.-.++..+++++.|.|+++|-+-. =-.+-++-..+++.+.|
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~G 151 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEAG 151 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhcC
Confidence 366888888888999999999999998888888877889999999999999997532 23344666666666644
No 101
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.83 E-value=1.3e+02 Score=30.38 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=60.6
Q ss_pred EEeccCCCC----------CccHHHHHHHHHHHHHcCcccEEEc-----c--CCCHHHHHHHHH--cCC------CeeEe
Q 014906 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVAL-----T--NFDTERLRIILE--NGI------PVVSN 251 (416)
Q Consensus 197 ~~lH~pd~~----------~~~~~e~~~aL~~l~~~GkIr~iGv-----S--n~~~~~l~~~~~--~g~------~~~~~ 251 (416)
+.||.|+.. ...++++++++.+..+... |.|-+ . |-++++.+++.+ .+. +.-+|
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 789988643 1238889999988865433 23333 2 557788777776 466 67999
Q ss_pred cccccccccc----h-h---HHHHHHHHHcCCeEEEeccccC
Q 014906 252 QVQHSVVDMR----P-Q---QKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 252 Q~~~n~l~~~----~-~---~~ll~~~~~~gi~via~spL~~ 285 (416)
-++||+.+.. + . ....+..+++||.+......+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999997421 1 1 2567778889999998887654
No 102
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=45.43 E-value=2.2e+02 Score=28.05 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=67.2
Q ss_pred HHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccC-CCCCCCCHHHHHHHHHHH--HhhcCCCc-cce
Q 014906 121 ADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV-PPPVKMTSSIVRESIDVS--RRRMDVPC-LDM 196 (416)
Q Consensus 121 l~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~-~~~~~~~~~~v~~~le~S--L~rLg~dy-iDl 196 (416)
-..|+.||||- |...+. =+.|+..+.. .+++.++.-.+.. ...+......+.++++-. -+++|..- +|.
T Consensus 52 E~~Gvkf~d~n---g~~qD~-~~iLK~~GvN---yvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 52 ENSGVKFFDTN---GVRQDA-LQILKNHGVN---YVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHcCceEEccC---ChHHHH-HHHHHHcCcC---eEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeec
Confidence 36899999975 333333 4456665554 5666666654322 122333444555555433 34566542 222
Q ss_pred -EEeccCCCCCccHHHHHHHHH--HHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccc
Q 014906 197 -LQFHWWDYSNPGYLDALNHLT--DLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (416)
Q Consensus 197 -~~lH~pd~~~~~~~e~~~aL~--~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~ 254 (416)
|.=||.|+.......+|+.|. +|++. |=.|+...+..+++.|+.|+.+|+-
T Consensus 125 HYSDfwaDPakQ~kPkaW~~l~fe~lk~a-------vy~yTk~~l~~m~~eGi~pdmVQVG 178 (403)
T COG3867 125 HYSDFWADPAKQKKPKAWENLNFEQLKKA-------VYSYTKYVLTTMKKEGILPDMVQVG 178 (403)
T ss_pred cchhhccChhhcCCcHHhhhcCHHHHHHH-------HHHHHHHHHHHHHHcCCCccceEec
Confidence 222455554443456776543 44433 3356677788888889999999986
No 103
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.29 E-value=1e+02 Score=28.77 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCCC-----CccHHHHHHHHHh
Q 014906 107 RIDRDDAVDAMLRYADAGLTTFDMADHY-----GPAEDLYGIFINR 147 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~Y-----G~sE~~lG~al~~ 147 (416)
.-+.++..++++.|.++|++-+=..++| .++++.+-+.+.+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 3467899999999999999987777765 2455555555544
No 104
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.11 E-value=2.9e+02 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCC
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADHYG 135 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG 135 (416)
++.+...++++...+.|+..+.-.--|.
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iElGiPfS 53 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIELGIPYS 53 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4678889999999999999998665553
No 105
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=44.82 E-value=1.3e+02 Score=30.57 Aligned_cols=83 Identities=7% Similarity=0.007 Sum_probs=60.0
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQ 271 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~ 271 (416)
.++.+|-.|-... -++.+.+|++.-.|. +.|=|-++...++.+++.+ -++++|+.....-- ..-..+.+.|+
T Consensus 232 ~~l~~iEeP~~~~-----d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~ 305 (404)
T PRK15072 232 YRLFWLEDPTPAE-----NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAA 305 (404)
T ss_pred cCCcEEECCCCcc-----CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHH
Confidence 5677777775322 266778888876665 7777888999999999875 47888887765321 12247899999
Q ss_pred HcCCeEEEecc
Q 014906 272 LTGVKLITYGT 282 (416)
Q Consensus 272 ~~gi~via~sp 282 (416)
.+|+.++.++.
T Consensus 306 ~~gi~~~~h~~ 316 (404)
T PRK15072 306 LYQVRTGSHGP 316 (404)
T ss_pred HcCCceeeccC
Confidence 99999997654
No 106
>PLN02389 biotin synthase
Probab=44.67 E-value=3.5e+02 Score=27.40 Aligned_cols=109 Identities=14% Similarity=0.098 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEE-eccCCCCCccHHHHHHHHHHHHHcCcccEEEccC--CCHHHHHHHHHcCCCe
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPV 248 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~-lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn--~~~~~l~~~~~~g~~~ 248 (416)
.++++.|.+.+++.. ..|+..+-+.- .+........++..++.+..+++.|. .+.+|+ .+.+.++++.+.|+.
T Consensus 115 ~Ls~EeIl~~a~~~~-~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l--~i~~s~G~l~~E~l~~LkeAGld- 190 (379)
T PLN02389 115 LMSKDDVLEAAKRAK-EAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM--EVCCTLGMLEKEQAAQLKEAGLT- 190 (379)
T ss_pred cCCHHHHHHHHHHHH-HcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc--EEEECCCCCCHHHHHHHHHcCCC-
Confidence 478999999988754 56887765431 01111111136778888888887664 344444 467999999887743
Q ss_pred eEeccccc-------ccc--cchh--HHHHHHHHHcCCeEEEeccccC
Q 014906 249 VSNQVQHS-------VVD--MRPQ--QKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 249 ~~~Q~~~n-------~l~--~~~~--~~ll~~~~~~gi~via~spL~~ 285 (416)
.+++.+. -+. ...+ -+.++.+++.|+.+.+.--++.
T Consensus 191 -~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 191 -AYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred -EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 2222222 110 1122 2688999999998876554443
No 107
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=43.10 E-value=2.9e+02 Score=25.96 Aligned_cols=20 Identities=0% Similarity=-0.044 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCeEEEecccc
Q 014906 265 KMAELCQLTGVKLITYGTVM 284 (416)
Q Consensus 265 ~ll~~~~~~gi~via~spL~ 284 (416)
..+++|+..|...+...|..
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~ 113 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAH 113 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCC
Confidence 67899999999999877643
No 108
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.26 E-value=3.7e+02 Score=26.68 Aligned_cols=82 Identities=17% Similarity=0.155 Sum_probs=57.5
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEecccccccc-cchhHHHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQ 271 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~-~~~~~~ll~~~~ 271 (416)
+++.++-.|-... -++.+.+|+++.-+. +.|=|.++++.+..+++.+ -++++|+....+- ...-..+.+.|+
T Consensus 202 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~~GGit~~~~~~~lA~ 275 (352)
T cd03325 202 YRLLFIEEPVLPE-----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISHAGGITELKKIAAMAE 275 (352)
T ss_pred cCCcEEECCCCcc-----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 4555666664322 377788888876555 6667778999999998765 3778888866431 112347999999
Q ss_pred HcCCeEEEec
Q 014906 272 LTGVKLITYG 281 (416)
Q Consensus 272 ~~gi~via~s 281 (416)
++|+.++..+
T Consensus 276 ~~gi~~~~h~ 285 (352)
T cd03325 276 AYDVALAPHC 285 (352)
T ss_pred HcCCcEeccC
Confidence 9999998655
No 109
>PRK02399 hypothetical protein; Provisional
Probab=41.13 E-value=63 Score=32.97 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEE--------------EccCCCHHHHHHHHHcCC
Q 014906 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGI 246 (416)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~i--------------GvSn~~~~~l~~~~~~g~ 246 (416)
.+...|+..| .|.+.+|--... =++||+|.++|.|..+ |+-+..++++..+.+.|+
T Consensus 203 ~~~~~Le~~G---yEvlVFHATG~G-------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gI 272 (406)
T PRK02399 203 AAREELEARG---YEVLVFHATGTG-------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGI 272 (406)
T ss_pred HHHHHHHhCC---CeEEEEcCCCCc-------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCC
Confidence 3344444444 799999986542 2578999999998754 444555666666666555
Q ss_pred C
Q 014906 247 P 247 (416)
Q Consensus 247 ~ 247 (416)
|
T Consensus 273 P 273 (406)
T PRK02399 273 P 273 (406)
T ss_pred C
Confidence 4
No 110
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=41.06 E-value=2.6e+02 Score=28.42 Aligned_cols=88 Identities=14% Similarity=0.076 Sum_probs=57.9
Q ss_pred ceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccc-hhHHHHHHHHHc
Q 014906 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 273 (416)
Q Consensus 195 Dl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~-~~~~ll~~~~~~ 273 (416)
|-+.+..|. +..++..+..+.+.+.++.+-+...+++.+++.++...+..++..+.|+.-.. .-+.+.+.|+++
T Consensus 100 D~Vvv~~p~-----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 100 DTLVVPHDA-----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CEEEEccCC-----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 555554443 44555556665555567777776667888888775444566666677775332 334799999999
Q ss_pred CCeEEEeccccCcc
Q 014906 274 GVKLITYGTVMGGL 287 (416)
Q Consensus 274 gi~via~spL~~G~ 287 (416)
|+.++.-.+.+.+.
T Consensus 175 gi~vIvD~a~a~~~ 188 (405)
T PRK08776 175 GALTVVDNTFLSPA 188 (405)
T ss_pred CCEEEEECCCcccc
Confidence 99999777766543
No 111
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=41.04 E-value=3.6e+02 Score=26.86 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhc---------------------CCCcceEEEEEeeccc
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRR---------------------ERPPEFLDKVRGLTKW 166 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r---------------------~r~~~~~~~~~i~tk~ 166 (416)
++.+.-..+.+.|-+.|+-+|=|-..+...+. |....- ... .+++++.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~-----l~~~~~~ayKIaS~E~~~~plik~iA~~~k-PiIlSTG----- 155 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDL-----LESLNPPAYKIASGEINDLPLIKYIAKKGK-PIILSTG----- 155 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHH-----HHhcCCCeEEecCccccChHHHHHHHhcCC-CEEEEcc-----
Confidence 56677888999999999999976655432221 222111 111 1222111
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHH-HHHHHHHHHHcCcccEEEccCCCHHHHHHHHH
Q 014906 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (416)
Q Consensus 167 ~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e-~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~ 243 (416)
-.+-+.+.++++...++ |. .|+.+||........+++ -+.+|.+|++.= ---||+|.|+...+.-+..
T Consensus 156 -----ma~~~ei~~av~~~r~~-g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~A 224 (347)
T COG2089 156 -----MATIEEIEEAVAILREN-GN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAA 224 (347)
T ss_pred -----cccHHHHHHHHHHHHhc-CC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHH
Confidence 12457788887765544 33 399999985433222333 556666666653 4579999998875555443
No 112
>PRK09248 putative hydrolase; Validated
Probab=40.61 E-value=3.1e+02 Score=25.58 Aligned_cols=155 Identities=13% Similarity=0.106 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCCCEEECCCCC---Ccc-HHHHHHHHHhhhcCCCcceEEEEEeecc--cCCCCCCCCHHHHHHHHHHH
Q 014906 112 DAVDAMLRYADAGLTTFDMADHY---GPA-EDLYGIFINRVRRERPPEFLDKVRGLTK--WVPPPVKMTSSIVRESIDVS 185 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~Y---G~s-E~~lG~al~~~~r~r~~~~~~~~~i~tk--~~~~~~~~~~~~v~~~le~S 185 (416)
...+++++|.+.|+..|=-++++ ... +...-..++....+.. .+ ++..+-. +.+. ....+.+. ..
T Consensus 20 ~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~-~i--~il~GiE~~~~~~--~~~~~~~~----~~ 90 (246)
T PRK09248 20 TLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVD-GV--GILRGIEANIKNY--DGEIDLPG----DM 90 (246)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhc-CC--eEEEEEEeccccC--CCcccCCH----hH
Confidence 47889999999999987666664 111 1000011111111111 22 2222222 1121 01112122 22
Q ss_pred HhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccC-----CCHHH-HHHHHHcCCCeeEeccccccc-
Q 014906 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-----FDTER-LRIILENGIPVVSNQVQHSVV- 258 (416)
Q Consensus 186 L~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn-----~~~~~-l~~~~~~g~~~~~~Q~~~n~l- 258 (416)
++ .+||+ ++.+|+.........+-.+.+.++.+.|.+--+|=-. ...+. ++.+.+.|+ .+|+..+-+
T Consensus 91 ~~--~~D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~---~lEvN~~~l~ 164 (246)
T PRK09248 91 LK--KLDIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV---ALEINNSSFG 164 (246)
T ss_pred hh--hCCEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCC---EEEEECCCCc
Confidence 22 24655 6667875322112333444445555788877665221 12233 455555664 334433222
Q ss_pred -----ccchhHHHHHHHHHcCCeEEEec
Q 014906 259 -----DMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 259 -----~~~~~~~ll~~~~~~gi~via~s 281 (416)
...+...++..+.+.|+.++.-|
T Consensus 165 ~~~~g~~~~~~~~~~~~~~~g~~~~~gS 192 (246)
T PRK09248 165 HSRKGSEDNCRAIAALCKKAGVWVALGS 192 (246)
T ss_pred cCCCCCcChHHHHHHHHHHcCCeEEEeC
Confidence 11245578999999998766533
No 113
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.39 E-value=86 Score=29.05 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc---ccEEEccCC-CHHHHHHHHHcCCCee
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTNF-DTERLRIILENGIPVV 249 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk---Ir~iGvSn~-~~~~l~~~~~~g~~~~ 249 (416)
+.+.....++ .|-.-|+.-+.+=+ - .+ ..++++++++++-. =-.||..+. ++++++.+++.|-.|.
T Consensus 23 ~~~~a~~~~~-al~~~Gi~~iEit~---~---~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKISL-AVIKGGIKAIEVTY---T---NP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEEC---C---Cc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 4454444444 45556766555442 1 22 24555566655421 135888765 7899999999886664
Q ss_pred EecccccccccchhHHHHHHHHHcCCeEEE
Q 014906 250 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 250 ~~Q~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
+ ++ ....+++++|+++|+.++.
T Consensus 93 v-----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----CC---CCCHHHHHHHHHcCCCEEC
Confidence 3 33 3455899999999998884
No 114
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=40.36 E-value=94 Score=28.43 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHcCCCeeEecc
Q 014906 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQV 253 (416)
Q Consensus 175 ~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g~~~~~~Q~ 253 (416)
++...+.+ +.|-+-|+..+.+= +- .+...++++.+.+-.. + -.||..+. +.++++++++.|-.|.+
T Consensus 19 ~~~a~~~~-~al~~gGi~~iEiT---~~---t~~a~~~I~~l~~~~p-~--~~vGAGTV~~~e~a~~a~~aGA~Fiv--- 85 (196)
T PF01081_consen 19 PEDAVPIA-EALIEGGIRAIEIT---LR---TPNALEAIEALRKEFP-D--LLVGAGTVLTAEQAEAAIAAGAQFIV--- 85 (196)
T ss_dssp GGGHHHHH-HHHHHTT--EEEEE---TT---STTHHHHHHHHHHHHT-T--SEEEEES--SHHHHHHHHHHT-SEEE---
T ss_pred HHHHHHHH-HHHHHCCCCEEEEe---cC---CccHHHHHHHHHHHCC-C--CeeEEEeccCHHHHHHHHHcCCCEEE---
Confidence 34443333 33455665544433 22 2224455554444332 2 46888875 78999999998865543
Q ss_pred cccccccchhHHHHHHHHHcCCeEEE
Q 014906 254 QHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 254 ~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
++ ...++++++|+++|+.++.
T Consensus 86 --SP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 86 --SP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --ES---S--HHHHHHHHHHTSEEEE
T ss_pred --CC---CCCHHHHHHHHHcCCcccC
Confidence 22 3455899999999999984
No 115
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.35 E-value=2.6e+02 Score=25.72 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----cCCCe
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 248 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~----~g~~~ 248 (416)
++.+...+-++ .|.++|+++|++- +|... +...+.++.+.+.... .+-.+++-...+.++...+ .+++.
T Consensus 11 ~~~~~k~~i~~-~L~~~Gv~~iEvg---~~~~~-~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLEIAK-ALDEAGVDYIEVG---FPFAS-EDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHHHHH-HHHHHTTSEEEEE---HCTSS-HHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHHHHH-HHHHhCCCEEEEc---ccccC-HHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 45565555555 5999999999988 33221 2234455555555555 5555666667777766444 56544
Q ss_pred eEecccccccc------cc------hhHHHHHHHHHcCCeE
Q 014906 249 VSNQVQHSVVD------MR------PQQKMAELCQLTGVKL 277 (416)
Q Consensus 249 ~~~Q~~~n~l~------~~------~~~~ll~~~~~~gi~v 277 (416)
..+-+..|... .. .-.+.+++++++|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 33333333311 11 1136789999999998
No 116
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=39.93 E-value=2.8e+02 Score=24.83 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhh
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~r 188 (416)
+.++..++++.+++.|++.|.-...-.+..+.+...-+..+ ++. +..++- .+.+.+..+++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-----~~~--iGag~v-------~~~~~~~~a~~----- 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-----EAL--IGAGTV-------LTPEQADAAIA----- 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-----CCE--EEEEeC-------CCHHHHHHHHH-----
Confidence 67899999999999999999877664444444444333222 121 222221 24555555544
Q ss_pred cCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecc
Q 014906 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 253 (416)
Q Consensus 189 Lg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~ 253 (416)
+|.+++ |.|... .+.. +..++.|.---+|++ +++++.++.+.| .+++++
T Consensus 75 ~Ga~~i-----~~p~~~----~~~~---~~~~~~~~~~i~gv~--t~~e~~~A~~~G--ad~i~~ 123 (190)
T cd00452 75 AGAQFI-----VSPGLD----PEVV---KAANRAGIPLLPGVA--TPTEIMQALELG--ADIVKL 123 (190)
T ss_pred cCCCEE-----EcCCCC----HHHH---HHHHHcCCcEECCcC--CHHHHHHHHHCC--CCEEEE
Confidence 676654 666432 2333 334444665678999 678888888766 455554
No 117
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=38.87 E-value=93 Score=28.59 Aligned_cols=90 Identities=11% Similarity=0.118 Sum_probs=57.9
Q ss_pred hhcCCCccceEEec-cCCCCCcc----HHHHHHHHHHHHH--cCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccc
Q 014906 187 RRMDVPCLDMLQFH-WWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (416)
Q Consensus 187 ~rLg~dyiDl~~lH-~pd~~~~~----~~e~~~aL~~l~~--~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~ 259 (416)
..-|.++||+=--- +|.....+ .......++.+++ .+. -+.+-+++++.++.+++.|.++.-+...+..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~-- 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED-- 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS--
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc--
Confidence 44688999985221 23221111 3345556666664 333 5777799999999999987766544433332
Q ss_pred cchhHHHHHHHHHcCCeEEEeccc
Q 014906 260 MRPQQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 260 ~~~~~~ll~~~~~~gi~via~spL 283 (416)
.+++++.++++|..++++-.-
T Consensus 105 ---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ---STTHHHHHHHHTSEEEEESES
T ss_pred ---cchhhhhhhcCCCEEEEEecc
Confidence 448999999999999998754
No 118
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=38.10 E-value=3.9e+02 Score=26.02 Aligned_cols=180 Identities=13% Similarity=0.117 Sum_probs=91.6
Q ss_pred eeeccccCCCCC--CCCCHHHHHHHHHHHH-HcCCCEEECCCCCCcc-----HHHHHHHHHhhhcCCCcceEEEEEeecc
Q 014906 94 VLNGMWQTSGGW--GRIDRDDAVDAMLRYA-DAGLTTFDMADHYGPA-----EDLYGIFINRVRRERPPEFLDKVRGLTK 165 (416)
Q Consensus 94 lglGt~~~~~~~--~~~~~~~~~~~l~~Al-~~Gin~fDTA~~YG~s-----E~~lG~al~~~~r~r~~~~~~~~~i~tk 165 (416)
|.||.|.-. .+ ...+.++..+.+...+ .-|.+.||-=.-|+.. -..+-++|+.+..+.. .+.+++.+..
T Consensus 72 iS~GG~~g~-~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p-~l~vs~Tlp~- 148 (294)
T cd06543 72 VSFGGASGT-PLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYP-DLKISFTLPV- 148 (294)
T ss_pred EEecCCCCC-ccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCC-CcEEEEecCC-
Confidence 466665532 12 1235566666666666 4599999976666532 2446778888776654 4444333321
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhcCC--CccceEEeccCCC--CCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHH
Q 014906 166 WVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (416)
Q Consensus 166 ~~~~~~~~~~~~v~~~le~SL~rLg~--dyiDl~~lH~pd~--~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~ 241 (416)
.+..++++.+ .+-+..+.-|+ |+|.+.-...-.. ...--..+..+.+.++.+=+--+=+ ++..++-..
T Consensus 149 ---~p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ 220 (294)
T cd06543 149 ---LPTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM 220 (294)
T ss_pred ---CCCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH
Confidence 1223444432 23333344554 3444433322211 1121234556666555552222212 444444443
Q ss_pred HHcCCCeeEeccccc--ccccchhHHHHHHHHHcCCeEEEeccccCc
Q 014906 242 LENGIPVVSNQVQHS--VVDMRPQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 242 ~~~g~~~~~~Q~~~n--~l~~~~~~~ll~~~~~~gi~via~spL~~G 286 (416)
+ |+.|..=+.... .+....-+.+.++++++||+.+.|..+.+.
T Consensus 221 i--g~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 221 I--GVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred c--cccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 3 333322222211 222334458999999999999999988764
No 119
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=38.05 E-value=1.7e+02 Score=26.64 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCc------cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~------sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~ 181 (416)
.++++...+.+.|.++|..|+=|+..|.. .-+.+.+.++ . .+-+++.++-| +.+++.+-
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~---~v~ik~aGGik--------t~~~~l~~ 192 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----G---RVGVKAAGGIR--------TLEDALAM 192 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----C---CceEEEeCCCC--------CHHHHHHH
Confidence 35678999999999999999999988751 2233444443 2 12122222222 66788888
Q ss_pred HHHHHhhcCC
Q 014906 182 IDVSRRRMDV 191 (416)
Q Consensus 182 le~SL~rLg~ 191 (416)
++.--.|+|+
T Consensus 193 ~~~g~~riG~ 202 (203)
T cd00959 193 IEAGATRIGT 202 (203)
T ss_pred HHhChhhccC
Confidence 8777777776
No 120
>PLN02363 phosphoribosylanthranilate isomerase
Probab=37.90 E-value=95 Score=29.67 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEec
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q 252 (416)
+++.++.++ ++|.|||=+++... .+..- ..+..+.+.+......++.|||. |-+++.+.++++. ..++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~V-s~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRSI-SLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCcC-CHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 345555544 38999999874332 11112 12333334433333246789986 8899999888875 4689999
Q ss_pred cccc
Q 014906 253 VQHS 256 (416)
Q Consensus 253 ~~~n 256 (416)
++-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 8764
No 121
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=37.54 E-value=4.4e+02 Score=27.26 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEecc
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHW 201 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~ 201 (416)
+.+.+++.++..++ |+.++|++|.+.-
T Consensus 228 T~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 228 TPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 77888888777654 8899999987753
No 122
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=37.44 E-value=53 Score=26.50 Aligned_cols=54 Identities=19% Similarity=0.304 Sum_probs=38.9
Q ss_pred cCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHHcCCeEEEeccccCc
Q 014906 231 TNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 231 Sn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL~~G 286 (416)
|.++.+.++++++.+ -++++|+.....-- ..-..+.++|+++|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 567888999999865 47888888664311 1224799999999999999886 443
No 123
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=37.19 E-value=2e+02 Score=27.55 Aligned_cols=78 Identities=10% Similarity=0.015 Sum_probs=50.0
Q ss_pred CCHH-HHHHHHHHHHHcCCCEEECCCCCCc---c-H--HHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHH
Q 014906 108 IDRD-DAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (416)
Q Consensus 108 ~~~~-~~~~~l~~Al~~Gin~fDTA~~YG~---s-E--~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~ 180 (416)
.+++ +...+.+.|+++|..|+=|+..|+. . | .++-+.+++..... . +.+|..- . =.+.++...
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~--~--vgIKAsG----G--Irt~~~A~~ 212 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAK--T--VGFKPAG----G--VRTAEDAAQ 212 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCC--C--eeEEccC----C--CCCHHHHHH
Confidence 4555 4888999999999999999999953 2 2 22333333211011 1 2233221 1 127788999
Q ss_pred HHHHHHhhcCCCccc
Q 014906 181 SIDVSRRRMDVPCLD 195 (416)
Q Consensus 181 ~le~SL~rLg~dyiD 195 (416)
-++.--+.||.+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 999999999998876
No 124
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=36.69 E-value=1.7e+02 Score=29.67 Aligned_cols=148 Identities=9% Similarity=0.055 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHH-cCCCEEECCCC-CCccHH--HHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHH
Q 014906 109 DRDDAVDAMLRYAD-AGLTTFDMADH-YGPAED--LYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (416)
Q Consensus 109 ~~~~~~~~l~~Al~-~Gin~fDTA~~-YG~sE~--~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~ 184 (416)
+.++..+.++.+++ .|++.|=.--. ....++ .+. ++++.- +.. .+.++ .+ ..++++...+.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~-avRea~-~~~-~l~vD--------aN-~~w~~~~A~~~~~- 234 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVK-ALAEAF-PGA-RLRLD--------PN-GAWSLETAIRLAK- 234 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHH-HHHHhC-CCC-cEEEe--------CC-CCcCHHHHHHHHH-
Confidence 55666677777775 69997743211 011121 122 222211 111 22221 11 1346665444443
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCCHHHHHHHHHcCCCeeEeccccccccc-ch
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RP 262 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~ 262 (416)
+|. - |+.++-.|-. -++.+.+|++...+- +.|=|.++.++++.+++.+ -++++|+.....-- ..
T Consensus 235 ---~l~--~-~l~~iEeP~~-------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~ 300 (395)
T cd03323 235 ---ELE--G-VLAYLEDPCG-------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRG 300 (395)
T ss_pred ---hcC--c-CCCEEECCCC-------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHH
Confidence 342 3 6666666643 367778888876665 6777778889999998865 47888888764311 12
Q ss_pred hHHHHHHHHHcCCeEEEeccc
Q 014906 263 QQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 263 ~~~ll~~~~~~gi~via~spL 283 (416)
-.++.+.|+.+|+.++..+..
T Consensus 301 ~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 301 SVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHHcCCeEEEecCc
Confidence 247999999999999987754
No 125
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=36.60 E-value=4.5e+02 Score=26.32 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC-cccEEEccCCCHHHHHHHHHcCCCee
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVV 249 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-kIr~iGvSn~~~~~l~~~~~~g~~~~ 249 (416)
..++.+.-.+-++. |.++|+++|++- +|... +.-++.++.+.+.+ ..+..+++....+.++.+.+.|++..
T Consensus 18 ~~~s~~~k~~ia~~-L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 89 (365)
T TIGR02660 18 VAFTAAEKLAIARA-LDEAGVDELEVG---IPAMG----EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAV 89 (365)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEe---CCCCC----HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEE
Confidence 34666666655555 899999998884 44321 22366667777664 37778888788899999888765432
Q ss_pred Eeccccccc------ccchh------HHHHHHHHHcCCeEE
Q 014906 250 SNQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 278 (416)
Q Consensus 250 ~~Q~~~n~l------~~~~~------~~ll~~~~~~gi~vi 278 (416)
.+-+.-|.. ....+ .+.+++++++|+.+.
T Consensus 90 ~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 90 HISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 222222211 11112 267889999998755
No 126
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=36.51 E-value=3.8e+02 Score=25.47 Aligned_cols=103 Identities=16% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEE-eccCCCCCcc----HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCC
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~-lH~pd~~~~~----~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~ 246 (416)
.++.+.+.+..++.+ +-|-++||+=. --+|+..... .+.....++.+++.-.+- +.+-+++++.++++++.|.
T Consensus 20 ~~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~ 97 (257)
T cd00739 20 FLSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA 97 (257)
T ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC
Confidence 356677766666654 56889999852 2234432212 223444556676653343 7888999999999999874
Q ss_pred CeeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 247 ~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
++ +| ..+..... ..+++.++++|+.++.+.
T Consensus 98 ~i-IN--disg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 98 DI-IN--DVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred CE-EE--eCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 32 23 23332211 578999999999999965
No 127
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.34 E-value=4.5e+02 Score=27.20 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCcccE----EEccCCCHHHHHHHHHc--CCCeeEecccccccccchhHHHHHHHHHcCCe
Q 014906 209 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (416)
Q Consensus 209 ~~e~~~aL~~l~~~GkIr~----iGvSn~~~~~l~~~~~~--g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~ 276 (416)
.++..++++.+++.|.--. +|+-+.+.+.+++.++. ...++. +.++++...+...+.+.+++.|.-
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~--~~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHT--IQVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCc--eeeeecccCCCcHHHHHHHHCCCc
Confidence 6678888889999886443 35556677777776552 223333 345566666777888888887763
No 128
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=36.13 E-value=6.7e+02 Score=28.21 Aligned_cols=77 Identities=10% Similarity=-0.026 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHc--CcccEEEccCCCHHHHHHHHHcCCCeeEe
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTERLRIILENGIPVVSN 251 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~--GkIr~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (416)
+.+.+++-++...........-+|+|...+..+ .+.+.+|.+..|+ ..+++|-++|.....+.-+++. +.
T Consensus 100 gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT---~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR-----Cq 171 (830)
T PRK07003 100 GVDEMAALLERAVYAPVDARFKVYMIDEVHMLT---NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR-----CL 171 (830)
T ss_pred cHHHHHHHHHHHHhccccCCceEEEEeChhhCC---HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh-----eE
Confidence 456677777665433322345688888776533 2456777766666 5899999999654444444443 34
Q ss_pred ccccccc
Q 014906 252 QVQHSVV 258 (416)
Q Consensus 252 Q~~~n~l 258 (416)
++.|..+
T Consensus 172 ~f~Fk~L 178 (830)
T PRK07003 172 QFNLKQM 178 (830)
T ss_pred EEecCCc
Confidence 5566654
No 129
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.06 E-value=3.2e+02 Score=27.29 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=66.6
Q ss_pred HHHHHHHHHhhcC-CCccceEEeccCCCC----------CccHHHHHHHHHH-HHHcCc---ccEEEccC--CCHHHHHH
Q 014906 178 VRESIDVSRRRMD-VPCLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEGK---IKTVALTN--FDTERLRI 240 (416)
Q Consensus 178 v~~~le~SL~rLg-~dyiDl~~lH~pd~~----------~~~~~e~~~aL~~-l~~~Gk---Ir~iGvSn--~~~~~l~~ 240 (416)
+++-.+.-+++|| .+....+.||.++.. ...+++.++++.+ +.+.|+ |+++=+.+ -+.+.+++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4443343344443 344578999987632 1226677777765 555563 55666654 45677777
Q ss_pred HHH--cCCCeeEeccccccccc----chh----HHHHHHHHHcCCeEEEeccccC
Q 014906 241 ILE--NGIPVVSNQVQHSVVDM----RPQ----QKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 241 ~~~--~g~~~~~~Q~~~n~l~~----~~~----~~ll~~~~~~gi~via~spL~~ 285 (416)
+.+ .+++..++-++||++.. .+. +.+.+..+++|+.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 665 35666788899998732 122 1456667788999987776654
No 130
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=35.92 E-value=35 Score=25.45 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.3
Q ss_pred hhh--hhhhhHHHHHH
Q 014906 17 SLS--TFLPLLSIVQT 30 (416)
Q Consensus 17 ~~~--~~~~~~~~~~~ 30 (416)
++| .||+.|+..+.
T Consensus 8 ~~sRR~Flk~lg~~aa 23 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAA 23 (66)
T ss_pred CccHHHHHHHHHHHHH
Confidence 445 89999988554
No 131
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=35.23 E-value=2.2e+02 Score=29.18 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHc------CcccEEEccCCCHHHHHHHHHcCC
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGI 246 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~------GkIr~iGvSn~~~~~l~~~~~~g~ 246 (416)
++++...+-+.+. ++..- -+++ +|-.|-.... .++.++.|.+|++. ..=-..+=|.++.+.++++++.+
T Consensus 245 ~~~~~ai~~l~~l-~~~~~-~~~~-~iEqPv~~~d-~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~- 319 (408)
T TIGR01502 245 VDIKAMADYIQTL-AEAAK-PFHL-RIEGPMDVGS-RQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK- 319 (408)
T ss_pred CCHHHHHHHHHHH-HHhCc-cCCe-EEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC-
Confidence 4666555544332 22111 1344 6777754322 24557777888766 44446667788999999999865
Q ss_pred CeeEeccccccccc-chhHHHHHHHHHcCCeEEEeccc
Q 014906 247 PVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 247 ~~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL 283 (416)
-.+++|+..+-.-- ..-.++.++|+.+||.++..+..
T Consensus 320 a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 320 AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 47888888775321 12247999999999999987654
No 132
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.89 E-value=5.6e+02 Score=26.86 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHcCcccEEEcc--C--CCHHHHHHHH----HcC-CCe-eEecccccccccchhHHHHHHHHHcCCeEE
Q 014906 209 YLDALNHLTDLKEEGKIKTVALT--N--FDTERLRIIL----ENG-IPV-VSNQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (416)
Q Consensus 209 ~~e~~~aL~~l~~~GkIr~iGvS--n--~~~~~l~~~~----~~g-~~~-~~~Q~~~n~l~~~~~~~ll~~~~~~gi~vi 278 (416)
.+.+++.++.++++.-|+.+-++ | .+.+.+.+++ +.+ ..+ ...+...+.+.+ ++++++..++.|+.-+
T Consensus 224 ~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~--d~ell~~l~~aG~~~v 301 (497)
T TIGR02026 224 PKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVR--DADILHLYRRAGLVHI 301 (497)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccC--CHHHHHHHHHhCCcEE
Confidence 55566666666655445555544 1 2333333332 232 221 112333322211 2356677777776655
Q ss_pred Eec
Q 014906 279 TYG 281 (416)
Q Consensus 279 a~s 281 (416)
..+
T Consensus 302 ~iG 304 (497)
T TIGR02026 302 SLG 304 (497)
T ss_pred EEc
Confidence 543
No 133
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=34.87 E-value=4.9e+02 Score=27.42 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCCccceEEeccCCCCCc---cHHHHHHHHHH-H----------HHcCcccEEEccCC------CHHH
Q 014906 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNP---GYLDALNHLTD-L----------KEEGKIKTVALTNF------DTER 237 (416)
Q Consensus 178 v~~~le~SL~rLg~dyiDl~~lH~pd~~~~---~~~e~~~aL~~-l----------~~~GkIr~iGvSn~------~~~~ 237 (416)
+-+.++...++++.+.++++.++.|+.... +...+++++-+ + .+.+.|--||.++. +.+.
T Consensus 100 IGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~e 179 (511)
T TIGR01278 100 LQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIE 179 (511)
T ss_pred hccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHH
Confidence 333334444444544578888888875432 23333333322 1 13456888888763 3466
Q ss_pred HHHHHH-cCCCe
Q 014906 238 LRIILE-NGIPV 248 (416)
Q Consensus 238 l~~~~~-~g~~~ 248 (416)
++++++ .|+.+
T Consensus 180 lkrlL~~lGi~v 191 (511)
T TIGR01278 180 LRRLLKTLGIEV 191 (511)
T ss_pred HHHHHHHCCCeE
Confidence 666665 35433
No 134
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=34.47 E-value=2.7e+02 Score=28.59 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEecc-CC----------CCCccHH---HHHH-HHHHHHHcCcccEEEccCCCH
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHW-WD----------YSNPGYL---DALN-HLTDLKEEGKIKTVALTNFDT 235 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~-pd----------~~~~~~~---e~~~-aL~~l~~~GkIr~iGvSn~~~ 235 (416)
+.+.+.+.+++.++ |+.|+|.+|.+-. |. ...++.+ +.++ ..+.|.+.|. +.+|+|||.-
T Consensus 202 T~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 202 TLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 67777777777654 7789999987643 21 0122222 2333 3346777777 9999999965
No 135
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.42 E-value=4.2e+02 Score=25.29 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc--CCCeeEe
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 251 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~--g~~~~~~ 251 (416)
+.+.+.+..++.. .-|.++||+=.- +... ...+.....++.+++.-.+ -+-+-+++++.++.+++. |. +.+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~-eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVE-EEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCch-hHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCC-CEEE
Confidence 5556666555543 678999998642 1111 1134455555666554222 378889999999999986 63 3333
Q ss_pred cccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 252 QVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 252 Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
=+ |... ...+.+++.+++.|+.++...
T Consensus 97 sI--s~~~-~~~~~~~~l~~~~g~~vv~m~ 123 (261)
T PRK07535 97 SV--SAEG-EKLEVVLPLVKKYNAPVVALT 123 (261)
T ss_pred eC--CCCC-ccCHHHHHHHHHhCCCEEEEe
Confidence 22 2211 113478999999999999865
No 136
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=34.32 E-value=5.3e+02 Score=26.43 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHcCcccEEE
Q 014906 211 DALNHLTDLKEEGKIKTVA 229 (416)
Q Consensus 211 e~~~aL~~l~~~GkIr~iG 229 (416)
.+.+.++.+++.|.--+++
T Consensus 90 ~l~eLl~~lk~~gi~taI~ 108 (404)
T TIGR03278 90 ELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred HHHHHHHHHHhCCCCEEEe
Confidence 4444445555555444444
No 137
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=33.98 E-value=39 Score=23.23 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 014906 332 QTLKRIASKHGVSIPVVAVRY 352 (416)
Q Consensus 332 ~~l~~ia~~~g~s~aq~aL~w 352 (416)
..++++.++.|+|..++|-..
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 445555566666666666443
No 138
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=33.59 E-value=5.4e+02 Score=26.35 Aligned_cols=151 Identities=7% Similarity=0.004 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHH-HHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHh
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDL-YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~-lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~ 187 (416)
+.++..+....+++.|++.|=.--.-...+++ .=+++++.-.+.. .+.++ .+ ..++++...+.+++
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~vG~~~-~L~vD--------aN-~~w~~~~A~~~~~~--- 262 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREVIGPDN-KLMID--------AN-QRWDVPEAIEWVKQ--- 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHhcCCCC-eEEEE--------CC-CCCCHHHHHHHHHH---
Confidence 45666777788889999976432110111111 1122332111211 22221 11 12466654444433
Q ss_pred hcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC----cccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-ch
Q 014906 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RP 262 (416)
Q Consensus 188 rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G----kIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~ 262 (416)
| +-+++.++-.|-... -++.+.+|++.. .=-+.|=|.++...++.+++.+ -.+++|+...-.-- ..
T Consensus 263 -L--~~~~l~~iEEP~~~~-----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~-a~dil~~d~~~~GGit~ 333 (415)
T cd03324 263 -L--AEFKPWWIEEPTSPD-----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG-AIDVVQIDSCRLGGVNE 333 (415)
T ss_pred -h--hccCCCEEECCCCCC-----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC-CCCEEEeCccccCCHHH
Confidence 3 234566667665322 255666676653 3335565678899999998865 47888888775321 12
Q ss_pred hHHHHHHHHHcCCeEEEec
Q 014906 263 QQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 263 ~~~ll~~~~~~gi~via~s 281 (416)
-..+.+.|+.+|+.++..+
T Consensus 334 ~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 334 NLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHcCCeEEEcC
Confidence 3478999999999987764
No 139
>PTZ00081 enolase; Provisional
Probab=33.51 E-value=3.7e+02 Score=27.85 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC--cccEEEc--cCCCHHHHHHHHHcCCCe
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 248 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G--kIr~iGv--Sn~~~~~l~~~~~~g~~~ 248 (416)
.+++.+.+-+.+.++.++ +++|-.|-... -|+.+.+|.+.- .|.-+|= +..+++.++++++.+ -.
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~-----D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~-aa 349 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQD-----DWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKK-AC 349 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCcc-----cHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhC-CC
Confidence 577888887777777764 56666665332 356666666653 5655553 356799999998865 36
Q ss_pred eEeccccccccc-chhHHHHHHHHHcCCeEEEe
Q 014906 249 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 249 ~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~ 280 (416)
+++|+..|-+-- ..-.++...|+++|+.++..
T Consensus 350 d~i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 350 NALLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred CEEEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 777777774321 12237899999999998863
No 140
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=33.40 E-value=3.2e+02 Score=26.23 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=47.2
Q ss_pred CCCccceEEeccCC----------CCCccHHHHH-HHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccccc
Q 014906 190 DVPCLDMLQFHWWD----------YSNPGYLDAL-NHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (416)
Q Consensus 190 g~dyiDl~~lH~pd----------~~~~~~~e~~-~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l 258 (416)
.++.||.+++---| ...+.+.+++ +..+..++.|| .+|+...+++...++++.|+.+.++.....++
T Consensus 166 ~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l 243 (267)
T PRK10128 166 DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLY 243 (267)
T ss_pred CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHH
Confidence 45788888776421 1222233333 33345778888 57887789999999999999998888888876
Q ss_pred c
Q 014906 259 D 259 (416)
Q Consensus 259 ~ 259 (416)
.
T Consensus 244 ~ 244 (267)
T PRK10128 244 T 244 (267)
T ss_pred H
Confidence 3
No 141
>PLN00191 enolase
Probab=33.29 E-value=3.9e+02 Score=27.84 Aligned_cols=97 Identities=8% Similarity=0.060 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEE--ccCCCHHHHHHHHHcCCCeeE
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVS 250 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iG--vSn~~~~~l~~~~~~g~~~~~ 250 (416)
.+++.+.+-+++.+++ .++.+|-.|-.. +-|+.+.+|.+..+|--+| ....+++.++++++.+ -.++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~-----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-aad~ 363 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ-----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-ACNA 363 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc-----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-CCCE
Confidence 4777777766665543 356677777533 3377778888888887777 2235789999988864 3677
Q ss_pred eccccccccc-chhHHHHHHHHHcCCeEEEe
Q 014906 251 NQVQHSVVDM-RPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 251 ~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~ 280 (416)
+++..|-+-- ..-.++.+.|+++|+.++.-
T Consensus 364 i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 364 LLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 7777774321 12237899999999999863
No 142
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=33.10 E-value=4.4e+02 Score=26.49 Aligned_cols=87 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred ceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccc-hhHHHHHHHHHc
Q 014906 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLT 273 (416)
Q Consensus 195 Dl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~-~~~~ll~~~~~~ 273 (416)
|-+.+-.|. +......+..+...+.++..-+...+++.++++++...+..++..+.|+.-.. ..+.+.+.|+++
T Consensus 91 D~Vl~~~p~-----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~ 165 (382)
T TIGR02080 91 DLLVAPHDC-----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV 165 (382)
T ss_pred CEEEEcCCC-----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 555555443 34445555555555555555555567888888775444566666677764322 235788999999
Q ss_pred CCeEEEeccccCc
Q 014906 274 GVKLITYGTVMGG 286 (416)
Q Consensus 274 gi~via~spL~~G 286 (416)
|+.++.-...+.+
T Consensus 166 g~~vvvD~a~~~~ 178 (382)
T TIGR02080 166 GAVVVVDNTFLSP 178 (382)
T ss_pred CCEEEEECCCccc
Confidence 9988876665544
No 143
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=32.97 E-value=13 Score=27.11 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.0
Q ss_pred cccccCcch
Q 014906 5 HCHFTGRNF 13 (416)
Q Consensus 5 ~~~~~~~~~ 13 (416)
-||||||.+
T Consensus 35 ~~hYtg~~V 43 (66)
T PF06174_consen 35 VCHYTGRDV 43 (66)
T ss_pred cccccCccc
Confidence 599999987
No 144
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=32.80 E-value=5.6e+02 Score=26.30 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC--cccEEEccC--CCHHHHHHHHHcCCCe
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALTN--FDTERLRIILENGIPV 248 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G--kIr~iGvSn--~~~~~l~~~~~~g~~~ 248 (416)
++++.+.+-+++.++++ ++++|-.|-... -|+.+.+|.+.- .|--+|==+ .+++.++++++.+ -.
T Consensus 262 ~s~~eai~~~~~lle~~-----~i~~iEdPl~~~-----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~-a~ 330 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKY-----PIVSIEDGLSEE-----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMG-VA 330 (425)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCcc-----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhC-CC
Confidence 45556555555544443 566677665322 366667776664 555444322 2599999988864 46
Q ss_pred eEeccccccccc-chhHHHHHHHHHcCCeEEE
Q 014906 249 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 249 ~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via 279 (416)
+++|+..+-.-- ..-.++.+.|+.+|+.++.
T Consensus 331 d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 331 NSILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred CEEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 777877775321 1223788999999998664
No 145
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=32.74 E-value=5.3e+02 Score=25.99 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCee
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVV 249 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk-Ir~iGvSn~~~~~l~~~~~~g~~~~ 249 (416)
..++.+...+-++. |.++|+++|++- +|... ++-++.++.+.+.|+ .+.++++-.....++.+.+.|++..
T Consensus 21 ~~~s~e~k~~ia~~-L~~~GV~~IE~G---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i 92 (378)
T PRK11858 21 VVFTNEEKLAIARM-LDEIGVDQIEAG---FPAVS----EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAV 92 (378)
T ss_pred CCCCHHHHHHHHHH-HHHhCCCEEEEe---CCCcC----hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEE
Confidence 45677766555554 999999999974 44321 122555566666554 4445555455788888888775432
Q ss_pred Eeccccccc------ccchh------HHHHHHHHHcCCeEEEe
Q 014906 250 SNQVQHSVV------DMRPQ------QKMAELCQLTGVKLITY 280 (416)
Q Consensus 250 ~~Q~~~n~l------~~~~~------~~ll~~~~~~gi~via~ 280 (416)
.+-+.-|-. ....+ .+.++++++.|..|...
T Consensus 93 ~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 93 HIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 222222221 11111 25788999999876653
No 146
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.70 E-value=1.9e+02 Score=29.72 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=56.9
Q ss_pred HhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH------c-CCCeeEeccccccc
Q 014906 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE------N-GIPVVSNQVQHSVV 258 (416)
Q Consensus 186 L~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~------~-g~~~~~~Q~~~n~l 258 (416)
.+.||++|- ++..|-.......+.. ..+-+.|-+..+|..+.+++++++.++ . +-||-+|-+ .++-
T Consensus 7 ~~~lgiryP---ii~gpMa~Giss~eLV---aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~ 79 (418)
T cd04742 7 KEDYGLRYA---YVAGAMARGIASAELV---VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPD 79 (418)
T ss_pred HHHhCCCcc---EECCcccCCCCCHHHH---HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCC
Confidence 355666543 3444433111122333 556688999999999999999887664 1 336766654 3332
Q ss_pred ccchhHHHHHHHHHcCCeEEEecc
Q 014906 259 DMRPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 259 ~~~~~~~ll~~~~~~gi~via~sp 282 (416)
+...+..+++.|.++||.++.-+.
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEecc
Confidence 333355789999999999886653
No 147
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.61 E-value=3.9e+02 Score=24.95 Aligned_cols=90 Identities=9% Similarity=0.108 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHH-HHHcCcccEEEccCC-CHHHHHHHHHcCCCeeEe
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTD-LKEEGKIKTVALTNF-DTERLRIILENGIPVVSN 251 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~-l~~~GkIr~iGvSn~-~~~~l~~~~~~g~~~~~~ 251 (416)
+++.....++ .|-+-|+..+.+=+ - .+...+.++.|.+ ..++.-=-.||+.+. ++++++.+++.|-.|.+
T Consensus 25 ~~~~a~~~~~-al~~gGi~~iEiT~---~---tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV- 96 (222)
T PRK07114 25 DVEVAKKVIK-ACYDGGARVFEFTN---R---GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV- 96 (222)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC---C---CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE-
Confidence 4455554444 45567766555442 2 2334455555532 223321136888765 78999999998865532
Q ss_pred cccccccccchhHHHHHHHHHcCCeEE
Q 014906 252 QVQHSVVDMRPQQKMAELCQLTGVKLI 278 (416)
Q Consensus 252 Q~~~n~l~~~~~~~ll~~~~~~gi~vi 278 (416)
+ +....+++++|+++|+.++
T Consensus 97 ----s---P~~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 97 ----T---PLFNPDIAKVCNRRKVPYS 116 (222)
T ss_pred ----C---CCCCHHHHHHHHHcCCCEe
Confidence 2 3345589999999999988
No 148
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=32.55 E-value=4.3e+02 Score=24.83 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCCCEEECCCC
Q 014906 111 DDAVDAMLRYADAGLTTFDMADH 133 (416)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~ 133 (416)
....+.+++|.+.|+..+=-+++
T Consensus 15 ~~~ee~v~~A~~~Gl~~i~~TdH 37 (253)
T TIGR01856 15 DTLEEVVQEAIQLGFEEICFTEH 37 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEecCC
Confidence 45788999999999997655555
No 149
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=32.24 E-value=4.9e+02 Score=25.47 Aligned_cols=72 Identities=10% Similarity=-0.108 Sum_probs=38.1
Q ss_pred HHHHHHHHHHc-CcccEEEccCCCHHHHHHHHHcCCCeeEeccccc---------cccc----chhHHHHHHHHHcCCeE
Q 014906 212 ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVSNQVQHS---------VVDM----RPQQKMAELCQLTGVKL 277 (416)
Q Consensus 212 ~~~aL~~l~~~-GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n---------~l~~----~~~~~ll~~~~~~gi~v 277 (416)
..+.++.++++ |..-.+.+...+.+.++.+.+.|.....++=.++ ...+ ...-+.++.+++.|+.+
T Consensus 86 ~~~~~~~i~~e~~~~~~~~~g~lt~e~l~~Lk~aG~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~ 165 (322)
T TIGR03550 86 LRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPF 165 (322)
T ss_pred HHHHHHHHHHhcCCccccCCCCCCHHHHHHHHhhCCCCCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 33444555554 6666666667788888887775422111110010 0110 11126788888999876
Q ss_pred EEeccc
Q 014906 278 ITYGTV 283 (416)
Q Consensus 278 ia~spL 283 (416)
-+.--+
T Consensus 166 ~s~~i~ 171 (322)
T TIGR03550 166 TTGILI 171 (322)
T ss_pred cceeeE
Confidence 554444
No 150
>PRK06256 biotin synthase; Validated
Probab=32.19 E-value=4.4e+02 Score=25.82 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-CEEECCCCCCccHH---HHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHH
Q 014906 105 WGRIDRDDAVDAMLRYADAGL-TTFDMADHYGPAED---LYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (416)
Q Consensus 105 ~~~~~~~~~~~~l~~Al~~Gi-n~fDTA~~YG~sE~---~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~ 180 (416)
+...+.++..+.++.+.+.|+ .++-.+..++.... .+-+.++...+. . .+.+....... +++.+..
T Consensus 88 ~~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~-----~i~~~~~~g~l----~~e~l~~ 157 (336)
T PRK06256 88 YAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-T-----DLEICACLGLL----TEEQAER 157 (336)
T ss_pred ecCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-C-----CCcEEecCCcC----CHHHHHH
Q ss_pred HHHHHHhhcCCCccceE------EeccCCCCCccHHHHHHHHHHHHHcCcccE----EEccCCCHHHHHHHHHcCCCeeE
Q 014906 181 SIDVSRRRMDVPCLDML------QFHWWDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILENGIPVVS 250 (416)
Q Consensus 181 ~le~SL~rLg~dyiDl~------~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~----iGvSn~~~~~l~~~~~~g~~~~~ 250 (416)
|++.|++.+-+- .+........ +++.+++++.+++.|.--. +|+ +.+.+.+.+.+..--....
T Consensus 158 -----LkeaG~~~v~~~lEts~~~~~~i~~~~t-~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~~ 230 (336)
T PRK06256 158 -----LKEAGVDRYNHNLETSRSYFPNVVTTHT-YEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELDA 230 (336)
T ss_pred -----HHHhCCCEEecCCccCHHHHhhcCCCCC-HHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCCC
Q ss_pred ecccccccccchhHHH
Q 014906 251 NQVQHSVVDMRPQQKM 266 (416)
Q Consensus 251 ~Q~~~n~l~~~~~~~l 266 (416)
..+.+|.+.+.+..++
T Consensus 231 ~~v~i~~l~P~pGT~l 246 (336)
T PRK06256 231 DSIPINFLNPIPGTPL 246 (336)
T ss_pred CEEeecccccCCCCCC
No 151
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=32.09 E-value=5e+02 Score=25.52 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcCCCccceEEeccCCC----CCccHHHHHHHHHHHHHcCccc-EEEccCC---CHHHHHHHHHc--C
Q 014906 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIK-TVALTNF---DTERLRIILEN--G 245 (416)
Q Consensus 176 ~~v~~~le~SL~rLg~dyiDl~~lH~pd~----~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~---~~~~l~~~~~~--g 245 (416)
++.++++++ +| .|++-||-... ......|+.+.|+++.+.=+|= .||=|+. +++.+.++.+. |
T Consensus 154 eWArk~Vk~----fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEG 226 (403)
T COG2069 154 EWARKCVKK----FG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEG 226 (403)
T ss_pred HHHHHHHHH----hC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcC
Confidence 445555544 77 57788885321 1223778888888888776664 4677764 57888887763 3
Q ss_pred CCeeEecccccccccchhHHHHHHHHHcCCeEEEecccc
Q 014906 246 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 284 (416)
Q Consensus 246 ~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~ 284 (416)
-.+..--...+ .. -+.+.+++.++|=.|++|+++.
T Consensus 227 eRclLaSanld---lD-y~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 227 ERCLLASANLD---LD-YERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred ceEEeeccccc---cC-HHHHHHHHHhcCceEEEeeccC
Confidence 22222222222 22 2378999999999999999774
No 152
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.86 E-value=4.7e+02 Score=26.19 Aligned_cols=99 Identities=11% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeE
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk-Ir~iGvSn~~~~~l~~~~~~g~~~~~ 250 (416)
.++.+...+-++. |.++|+++|++- +|... ++-++.+..+.+.++ .+-.+++....+.++.+.+.|++...
T Consensus 18 ~~s~~~k~~ia~~-L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVEIARK-LDELGVDVIEAG---FPIAS----EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEEe---CCCCC----hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 4566666555555 899999999974 33221 223566666665554 55556667778889998887755332
Q ss_pred eccccccc------ccch------hHHHHHHHHHcCCeEE
Q 014906 251 NQVQHSVV------DMRP------QQKMAELCQLTGVKLI 278 (416)
Q Consensus 251 ~Q~~~n~l------~~~~------~~~ll~~~~~~gi~vi 278 (416)
+-+..|.. .+.. -.+.+++++++|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 32222221 1111 1267889999998764
No 153
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=31.66 E-value=1.1e+02 Score=31.40 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=34.1
Q ss_pred ccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEE--------------EccCCCHHHHHHHHHcCCC
Q 014906 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGIP 247 (416)
Q Consensus 193 yiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~i--------------GvSn~~~~~l~~~~~~g~~ 247 (416)
-.|.+.+|--... =++||+|.++|.+..+ |+-...++++..+.+.|+|
T Consensus 211 G~Ev~VFHAtG~G-------G~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GIP 272 (403)
T PF06792_consen 211 GYEVLVFHATGTG-------GRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGIP 272 (403)
T ss_pred CCeEEEEcCCCCc-------hHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCCC
Confidence 4789999986532 2578999999998765 4555566666666666654
No 154
>PRK12928 lipoyl synthase; Provisional
Probab=31.66 E-value=4.9e+02 Score=25.25 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHcC---cccE---EEccCCCHHHHHHHHH--cCCCeeEecc-cccc-------cccc--hh--HHHH
Q 014906 208 GYLDALNHLTDLKEEG---KIKT---VALTNFDTERLRIILE--NGIPVVSNQV-QHSV-------VDMR--PQ--QKMA 267 (416)
Q Consensus 208 ~~~e~~~aL~~l~~~G---kIr~---iGvSn~~~~~l~~~~~--~g~~~~~~Q~-~~n~-------l~~~--~~--~~ll 267 (416)
..++.++.++.+++.| .++. +|+ +-+.+.+.+.++ ..++++.+.+ +|.. +.+. ++ +.+.
T Consensus 186 t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~ 264 (290)
T PRK12928 186 DYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALG 264 (290)
T ss_pred CHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHH
Confidence 3778899999999998 4443 466 556666666554 1234444443 3322 2221 22 3677
Q ss_pred HHHHHcCCeEEEeccccC
Q 014906 268 ELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 268 ~~~~~~gi~via~spL~~ 285 (416)
+.+.+.|...++.+||-.
T Consensus 265 ~~~~~~g~~~~~~~p~~r 282 (290)
T PRK12928 265 QIARELGFSHVRSGPLVR 282 (290)
T ss_pred HHHHHcCCceeEecCccc
Confidence 888899999999898864
No 155
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=31.24 E-value=1.5e+02 Score=27.71 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHcCcccEEEc----cCCCHHHHHHHHHc-CCCeeEecccccccccchhHHHHHHHHHcCCeEEEecc
Q 014906 208 GYLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 208 ~~~e~~~aL~~l~~~GkIr~iGv----Sn~~~~~l~~~~~~-g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~sp 282 (416)
..++..++|..|+ +..|.. |.+....++.+.+. |+ ..|.|+=...+++++...-+.|..++.-+.
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 3777778888887 444443 44555666666653 43 134444233445777777788888887777
Q ss_pred ccCccCCCcccCCCCCCCCCCCCCCCchHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCCCHH
Q 014906 283 VMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 346 (416)
Q Consensus 283 L~~G~L~~k~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~a 346 (416)
-+.|+-. .+ -+.....+..+.|+.+.++||+.|+
T Consensus 144 sa~gL~~-~~-----------------------------lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 144 SAEGLDE-SW-----------------------------LGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred eccCCCh-HH-----------------------------hCCccCHHHHHHHHHHHHhcCCCcc
Confidence 7777521 00 0112223455888999999998763
No 156
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=31.24 E-value=4e+02 Score=24.22 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhh
Q 014906 342 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 381 (416)
Q Consensus 342 g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~ 381 (416)
..|-.+.||+|+..++.-...+.|+.-+..+|.-.|+..+
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l 114 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLL 114 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHH
Confidence 4566788999999998777788999888888888888764
No 157
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.94 E-value=1.3e+02 Score=26.68 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhcCCCc----cceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc-CC--CeeE
Q 014906 178 VRESIDVSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVS 250 (416)
Q Consensus 178 v~~~le~SL~rLg~dy----iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~-g~--~~~~ 250 (416)
.+..++..++++|++. ++.+.-.+.. ... +.++.+.|+.|++.| ++-.-+||.+...+...++. |+ .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLR-LPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 4566677777777652 1222111111 112 456777889999888 55666888888877776663 43 2333
Q ss_pred ecccccccccchhHH-HHHHHHHcCCe
Q 014906 251 NQVQHSVVDMRPQQK-MAELCQLTGVK 276 (416)
Q Consensus 251 ~Q~~~n~l~~~~~~~-ll~~~~~~gi~ 276 (416)
+-..-..-.++|..+ +...+++.|+.
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~~ 164 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGVP 164 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCCC
Confidence 322211112344444 45556666653
No 158
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.89 E-value=1.8e+02 Score=26.65 Aligned_cols=72 Identities=15% Similarity=0.306 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCH----HHHHHHHHcCCCeeEe
Q 014906 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 251 (416)
Q Consensus 176 ~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~----~~l~~~~~~g~~~~~~ 251 (416)
..+.+.+++.++.+|.+. +++ .+... +..+..+.++.+.++| +..|=++..++ ..++++.+.|+|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~-d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQN-DPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTT-THHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCC-CHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 568889999999999653 332 22222 3677889999999887 88888886654 6677777778876665
Q ss_pred ccc
Q 014906 252 QVQ 254 (416)
Q Consensus 252 Q~~ 254 (416)
-..
T Consensus 87 d~~ 89 (257)
T PF13407_consen 87 DSD 89 (257)
T ss_dssp SST
T ss_pred ecc
Confidence 444
No 159
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.85 E-value=4.7e+02 Score=24.79 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc--CCCeeE
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 250 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~--g~~~~~ 250 (416)
.+++.+.+..++.++ -|.|+||+=. .|.. .+..++.-+.+..+++.-.+ -|.|-+++++.++.+++. |. ..+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~-~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~G~-~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGG-LDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCC-CCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCCCC-cEE
Confidence 467778888777765 5999999854 2332 22233333333333332122 377779999999999986 63 233
Q ss_pred eccccccccc-chhHHHHHHHHHcCCeEEEeccc
Q 014906 251 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 251 ~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL 283 (416)
|=+ +.... .....+++.+++.|..++.+..-
T Consensus 97 NsI--s~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 97 NSI--NLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred EeC--CCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 322 22211 12346889999999999988643
No 160
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=30.78 E-value=91 Score=22.80 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 014906 332 QTLKRIASKHGVSIPVVAVRY 352 (416)
Q Consensus 332 ~~l~~ia~~~g~s~aq~aL~w 352 (416)
-.+++||+++|++..+|- .|
T Consensus 23 i~lkdIA~~Lgvs~~tIr-~W 42 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTIR-KW 42 (60)
T ss_pred ccHHHHHHHHCCCHHHHH-HH
Confidence 378999999999999987 55
No 161
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=30.58 E-value=2.5e+02 Score=30.45 Aligned_cols=68 Identities=7% Similarity=-0.095 Sum_probs=43.0
Q ss_pred hhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEeccccc
Q 014906 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n 256 (416)
..+|+|||=+++....-.... .+.....+.+....-.|+.|||. |-+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 348999999875543211121 33313333333323357889986 8899999998875 46899999865
No 162
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=30.43 E-value=3.9e+02 Score=23.67 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 224 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk 224 (416)
+++.+.+ ..++++.- =+++++|..+......+..-..+..|+++|.
T Consensus 137 ~~~~i~~---~~~~~~~~--g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 137 GVESIVD---RVVKNTKP--GDIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CHHHHHH---HHHhcCCC--CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 4444443 33444432 3799999643222212333345566777774
No 163
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=30.42 E-value=2.4e+02 Score=25.48 Aligned_cols=100 Identities=22% Similarity=0.244 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhcCCCccceEEeccCCC-CCccHHHHHHHHHHHHHcCcccEEEccCCCH--HHHHHHHHcCCCeeEecc
Q 014906 177 IVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 253 (416)
Q Consensus 177 ~v~~~le~SL~rLg~dyiDl~~lH~pd~-~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~--~~l~~~~~~g~~~~~~Q~ 253 (416)
.....+.+.+++.+... +-+.+--.+. .........+.+..|++.|- .+.+.+|+. ..+..+.. .+++.+-+
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iKl 174 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLKI 174 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEEE
Confidence 34566667777766552 2222222221 11223445588999999997 577777753 34444433 45676666
Q ss_pred ccccccc--------chhHHHHHHHHHcCCeEEEec
Q 014906 254 QHSVVDM--------RPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 254 ~~n~l~~--------~~~~~ll~~~~~~gi~via~s 281 (416)
..+++.. ..-+.+...|+..|+.+|+-.
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 6554421 122467899999999999844
No 164
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=30.37 E-value=5.1e+02 Score=25.10 Aligned_cols=101 Identities=8% Similarity=0.031 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEE-eccCCCCCcc----HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~-lH~pd~~~~~----~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~ 247 (416)
.+.+.+.+..++.+ .-|.|-||+=- --.|+...-+ .+.+...++.++++-.+ -|.|-++.++.++++++.|.+
T Consensus 35 ~~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gad 112 (282)
T PRK11613 35 NSLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAH 112 (282)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCC
Confidence 46666666666554 45777777642 1224432111 22355667777754223 488889999999999998854
Q ss_pred eeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 248 ~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
+ +|=+ +-+. +.++++.+++.|+.++.+.
T Consensus 113 i-INDI--~g~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 113 I-INDI--RSLS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred E-EEEC--CCCC---CHHHHHHHHHcCCCEEEEc
Confidence 3 2322 2221 3367888999999999885
No 165
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=30.30 E-value=3.8e+02 Score=26.82 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=56.1
Q ss_pred EEeccCCCC----------CccHHHHHHHHHHHHH-cCc---ccEEEccCC--CHHHHHHHHH--cCCCeeEeccccccc
Q 014906 197 LQFHWWDYS----------NPGYLDALNHLTDLKE-EGK---IKTVALTNF--DTERLRIILE--NGIPVVSNQVQHSVV 258 (416)
Q Consensus 197 ~~lH~pd~~----------~~~~~e~~~aL~~l~~-~Gk---Ir~iGvSn~--~~~~l~~~~~--~g~~~~~~Q~~~n~l 258 (416)
+.||.+++. ...++++++++.++.+ .|+ |+++=+.++ +.+.+.++.+ .++++.++-++||+.
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 679987632 1136788888876644 442 334444433 5577777665 356677888899986
Q ss_pred cc----chh----HHHHHHHHHcCCeEEEeccccC
Q 014906 259 DM----RPQ----QKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 259 ~~----~~~----~~ll~~~~~~gi~via~spL~~ 285 (416)
.. .+. +.+.++.+++|+.++.....+.
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 42 111 1456667788999998876654
No 166
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=30.13 E-value=5.9e+02 Score=25.73 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=53.9
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQL 272 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~ 272 (416)
=|.+++-.+. +......+..+...+.++-.-+...+.+.++.++..+.+..++..+-|+.-. ...+.+.+.|++
T Consensus 92 Gd~Il~~~~~-----y~~~~~~~~~~~~~~gi~v~~vd~~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~ 166 (388)
T PRK08861 92 DDLIVAPHDC-----YGGTYRLFNTRANKGDFKVQFVDQSDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKA 166 (388)
T ss_pred CCEEEEcCCc-----hHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 3556554432 3444544444444443454445555778887776544556666667776422 233578999999
Q ss_pred cCCeEEEeccccCcc
Q 014906 273 TGVKLITYGTVMGGL 287 (416)
Q Consensus 273 ~gi~via~spL~~G~ 287 (416)
+|+.++.-...+.|.
T Consensus 167 ~gi~vIvDea~~~~~ 181 (388)
T PRK08861 167 VGALVAVDNTFLTPV 181 (388)
T ss_pred cCCEEEEECCccccc
Confidence 999998777766654
No 167
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=30.10 E-value=3.8e+02 Score=26.64 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcC
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g 245 (416)
.+++.+...+..+-+.+-+++++|-|=.+.......++..+++++.+.|.++|.+-.+ +++-++...+++.+.|
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~~g 218 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLEDAG 218 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHhcC
Confidence 4678888888889999988999988887777666667799999999999999996533 4444777777777654
No 168
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=29.98 E-value=2e+02 Score=29.07 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCeEEEec
Q 014906 264 QKMAELCQLTGVKLITYG 281 (416)
Q Consensus 264 ~~ll~~~~~~gi~via~s 281 (416)
+.+++.|+++||.||.-+
T Consensus 61 ~~~L~~~~~~gIkvI~Na 78 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITNA 78 (362)
T ss_pred HHHHHHHHhCCCCEEEeC
Confidence 356777777777777653
No 169
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=29.97 E-value=4.3e+02 Score=24.04 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEECC----------CCCCc----cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCC
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA----------~~YG~----sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~ 174 (416)
+.++..++.+.+.++|+..||-= +.||. ..+++-+.++.....- .+.+.+++.. ... ..
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~--~~~v~vk~r~--~~~---~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV--PIPVTVKIRL--GWD---DE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc--CCCEEEEEee--ccC---Cc
Confidence 56788888888899999999853 34553 3444556666554321 1122333321 111 01
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEeccCCCCC-ccHHHHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHc
Q 014906 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILEN 244 (416)
Q Consensus 175 ~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~-~~~~e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~ 244 (416)
+...+-++ .|+.+|+ |.+.+|...... ......|+.+.++++.-.+--++..+. +++.+.++++.
T Consensus 138 -~~~~~~~~-~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 138 -EETLELAK-ALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred -hHHHHHHH-HHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHh
Confidence 23333333 3455675 445567542110 000113445555555555555554444 45555555543
No 170
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=29.91 E-value=5e+02 Score=26.49 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC--cccEEEc--cCCCHHHHHHHHHcCCCe
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 248 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G--kIr~iGv--Sn~~~~~l~~~~~~g~~~ 248 (416)
++++++.+-+.+.++.+ ++++|-.|-...+ |+.+.+|.+.- .|--+|= ..++++.++++++.+ -.
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D-----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~-a~ 329 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD-----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKK-AA 329 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC-----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhC-CC
Confidence 46666666666655544 4677777754333 55666676663 4443332 235799999998865 46
Q ss_pred eEeccccccccc-chhHHHHHHHHHcCCeEEE
Q 014906 249 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 249 ~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via 279 (416)
+++|+..+-+-- ..-.++...|+.+|+.++.
T Consensus 330 d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 330 NALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 777777774311 1223788999999999874
No 171
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=29.90 E-value=5.6e+02 Score=25.41 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC-cccEEEc-----------cCC-CHHHH
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVAL-----------TNF-DTERL 238 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-kIr~iGv-----------Sn~-~~~~l 238 (416)
.++++.|.+.+++. ...|+..+.+..-+.|+. + .+...+.++.++++. .|.-..+ ++. +.+.+
T Consensus 78 ~l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~~--~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l 153 (351)
T TIGR03700 78 AMSLEEIVARVKEA-YAPGATEVHIVGGLHPNL--P-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVL 153 (351)
T ss_pred CCCHHHHHHHHHHH-HHCCCcEEEEecCCCCCC--C-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHH
Confidence 46889999988864 568999998886666642 2 566777778888875 3433332 222 24557
Q ss_pred HHHHHcCCCee---Eeccc----cccccc---chhH--HHHHHHHHcCCeEEEeccccCc
Q 014906 239 RIILENGIPVV---SNQVQ----HSVVDM---RPQQ--KMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 239 ~~~~~~g~~~~---~~Q~~----~n~l~~---~~~~--~ll~~~~~~gi~via~spL~~G 286 (416)
+++.+.|..-. ..+.- +.-+.. ..++ +.++.+++.|+.+.+.-.++.|
T Consensus 154 ~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 154 DELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
Confidence 88887664211 11110 111111 2233 6899999999998776666554
No 172
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=29.84 E-value=4.2e+02 Score=25.30 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHc--CcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEecccc
Q 014906 209 YLDALNHLTDLKEE--GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVM 284 (416)
Q Consensus 209 ~~e~~~aL~~l~~~--GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~ 284 (416)
..+++++++.+++. |.=--+|+||- ..|. ++. . ....-++..|.+.|+..-...|..
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~---------Sfgl-p~r-----~----~in~~fl~~a~~~Gl~~aI~np~~ 231 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNI---------SFGL-PNR-----K----LINRAFLVMAMGAGMDSAILDPLD 231 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCC---------ccCC-cch-----H----HHHHHHHHHHHHcCCCEEeeCCCC
Confidence 56789999999988 88889999994 2332 110 0 112356777888887766666653
No 173
>PLN02540 methylenetetrahydrofolate reductase
Probab=29.71 E-value=7.3e+02 Score=26.68 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCCEEECCCCCCc--cHHHHHHHHHhhhcC-CCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHH
Q 014906 110 RDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRE-RPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (416)
Q Consensus 110 ~~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~-r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL 186 (416)
.+...+.+++-.+.|-.|||.++.=|- ++.-+.-+. ...+. .. +.+ ..++. .+.+...+...+++.
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~-~lq~~~Gi-e~i--~HLTC------rd~n~~~L~~~L~~a- 82 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIAN-RMQNMICV-ETM--MHLTC------TNMPVEKIDHALETI- 82 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHH-HHHHhcCC-Cee--EEeee------cCCCHHHHHHHHHHH-
Confidence 345666777777889999998877653 333322221 11111 11 111 11111 134667777777776
Q ss_pred hhcCCCccceEEecc-CCCC-------CccHHHHHHHHHHHHHc-CcccEEEccCCCH------------------HHHH
Q 014906 187 RRMDVPCLDMLQFHW-WDYS-------NPGYLDALNHLTDLKEE-GKIKTVALTNFDT------------------ERLR 239 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~-pd~~-------~~~~~e~~~aL~~l~~~-GkIr~iGvSn~~~------------------~~l~ 239 (416)
+.+|++.| +-|-. |... ...+..+.+-++.+++. |....|||+.|.. ..+.
T Consensus 83 ~~~GIrNI--LALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~ 160 (565)
T PLN02540 83 KSNGIQNI--LALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLA 160 (565)
T ss_pred HHCCCCEE--EEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHH
Confidence 78887654 33332 1100 11233455555666654 5567889886631 2344
Q ss_pred HHH---HcCCCeeEecccccccccchhHHHHHHHHHcCCeE
Q 014906 240 IIL---ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 277 (416)
Q Consensus 240 ~~~---~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~v 277 (416)
.+. +.|..+.+-|.-|.. ..-.+.++.|++.||.+
T Consensus 161 ~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~v 198 (565)
T PLN02540 161 YLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGITC 198 (565)
T ss_pred HHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCCC
Confidence 444 357788888888875 33347889999998543
No 174
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=29.35 E-value=4.7e+02 Score=24.54 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=35.7
Q ss_pred CHHHHHHHHH-cCCCeeEeccc--ccccccc---hhHHHHHHHHHcCCeEEEeccccCcc
Q 014906 234 DTERLRIILE-NGIPVVSNQVQ--HSVVDMR---PQQKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 234 ~~~~l~~~~~-~g~~~~~~Q~~--~n~l~~~---~~~~ll~~~~~~gi~via~spL~~G~ 287 (416)
++.+++.+.+ .|+.+.++.-- ||.++.. ..+.+..+++.-|..-+.+-||..|-
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s 109 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGS 109 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCC
Confidence 5677777766 46655444332 3433211 11379999999999999999998764
No 175
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.98 E-value=1.2e+02 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHc
Q 014906 325 SQFQVLLQTLKRIASKHGVSIPVVAVRYILD 355 (416)
Q Consensus 325 ~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~ 355 (416)
+...+.+.+|.++|++.|++..++| .|+|.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc-~YAL~ 77 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELC-VYALG 77 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHH-HHHHH
Confidence 5777888999999999999999998 55554
No 176
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=28.95 E-value=2.4e+02 Score=27.60 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHh
Q 014906 332 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 378 (416)
Q Consensus 332 ~~l~~ia~~~g~------s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~ 378 (416)
..|.++|++++. +..++-..|+.... .+.+..|+|+ |+.+-+.+
T Consensus 226 ~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGAST--P~~li~eV 275 (298)
T PRK01045 226 NRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASA--PEWLVQEV 275 (298)
T ss_pred HHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCC--CHHHHHHH
Confidence 678888888774 88899999986654 4577899999 98876543
No 177
>PRK02866 cyanate hydratase; Validated
Probab=28.78 E-value=86 Score=27.34 Aligned_cols=65 Identities=23% Similarity=0.285 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHHHHhh
Q 014906 333 TLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 399 (416)
Q Consensus 333 ~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~~~~~ 399 (416)
.|.+.-.+.|.|-.++|=+=-++.-.+.+++.|..+.++++.+...+.+ .|+++....|...-.+
T Consensus 9 ~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~L--gL~~~~~~~l~~~P~r 73 (147)
T PRK02866 9 KILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELL--GLDEDAVALLQEVPYR 73 (147)
T ss_pred HHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHh--CCCHHHHHHHhcCCcC
Confidence 3444444455555555544444444444455565555688888887775 5999988888765433
No 178
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=28.77 E-value=5.7e+02 Score=25.13 Aligned_cols=75 Identities=9% Similarity=0.076 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCcccEEEccC----CCH-----HHHHHHHHcCCCeeEecccccccc--cchhHHHHHHHHHcCCeEEEe
Q 014906 212 ALNHLTDLKEEGKIKTVALTN----FDT-----ERLRIILENGIPVVSNQVQHSVVD--MRPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 212 ~~~aL~~l~~~GkIr~iGvSn----~~~-----~~l~~~~~~g~~~~~~Q~~~n~l~--~~~~~~ll~~~~~~gi~via~ 280 (416)
..+.++.+..-..++.+|+.+ ..+ +.++.+.+.+.+. ++++.+|=.. .....+.++.+++.|+.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~-~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT-VLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE-EEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 445566677777888888764 333 3333333344332 2233443111 011236788889999999999
Q ss_pred ccccCcc
Q 014906 281 GTVMGGL 287 (416)
Q Consensus 281 spL~~G~ 287 (416)
+++..|.
T Consensus 240 tvllkgi 246 (321)
T TIGR03821 240 SVLLRGV 246 (321)
T ss_pred ceeeCCC
Confidence 9998875
No 179
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=28.54 E-value=5.5e+02 Score=26.06 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.1
Q ss_pred CHHHHHHHHHcC-CCeeEecccccccccchh----HHHHHHHHHcCCeEEEeccc
Q 014906 234 DTERLRIILENG-IPVVSNQVQHSVVDMRPQ----QKMAELCQLTGVKLITYGTV 283 (416)
Q Consensus 234 ~~~~l~~~~~~g-~~~~~~Q~~~n~l~~~~~----~~ll~~~~~~gi~via~spL 283 (416)
+-+.+++....+ ++....=.+.||.-+-.. +.+.+.|++||+.||+-..-
T Consensus 146 D~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIH 200 (388)
T COG1168 146 DFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIH 200 (388)
T ss_pred cHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeeccc
Confidence 556776655543 344444456777644322 37889999999999975533
No 180
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=28.33 E-value=4.7e+02 Score=23.95 Aligned_cols=107 Identities=11% Similarity=0.045 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhh
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~r 188 (416)
+.+++.++++.+++.|++.|.-...--+..+.|.+..++.+. . +.+..+|-+ +.+++..+++
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~----~--~~iGaGTV~-------~~~~~~~a~~----- 81 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGD----R--ALIGAGTVL-------SPEQVDRLAD----- 81 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCC----C--cEEeEEecC-------CHHHHHHHHH-----
Confidence 678999999999999999998775433344444444433321 1 234444433 5566666654
Q ss_pred cCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCC
Q 014906 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (416)
Q Consensus 189 Lg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~ 247 (416)
.|.+ ++|.|... .+.. +..++.|.. ++.+.++++++.++.+.|.+
T Consensus 82 aGA~-----fivsp~~~----~~v~---~~~~~~~~~--~~~G~~t~~E~~~A~~~Gad 126 (206)
T PRK09140 82 AGGR-----LIVTPNTD----PEVI---RRAVALGMV--VMPGVATPTEAFAALRAGAQ 126 (206)
T ss_pred cCCC-----EEECCCCC----HHHH---HHHHHCCCc--EEcccCCHHHHHHHHHcCCC
Confidence 4544 35777532 2233 445567775 55558888999998887643
No 181
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=28.30 E-value=6.2e+02 Score=25.35 Aligned_cols=60 Identities=8% Similarity=0.014 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEecc-CCC-----------CCccHH---HHH-HHHHHHHHcCcccEEEccCCC
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYL---DAL-NHLTDLKEEGKIKTVALTNFD 234 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~-pd~-----------~~~~~~---e~~-~aL~~l~~~GkIr~iGvSn~~ 234 (416)
.+.+.+++.++..++ |+.++|.+|.+.- |.. ..++.+ +.+ .+.+.|.+.|. ..+++|||.
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 377888888887664 8888888887763 210 001111 111 24456677776 456788774
No 182
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=27.82 E-value=5.7e+02 Score=24.79 Aligned_cols=110 Identities=8% Similarity=-0.004 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc-ccEEEccC-----------C-CHHHH
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTN-----------F-DTERL 238 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk-Ir~iGvSn-----------~-~~~~l 238 (416)
.++++.|.+.++...+ .|...+-+.--+.|+. ..+...+.++.+++++. +.-.++|. . +.+.+
T Consensus 35 ~ls~eeI~~~~~~~~~-~G~~~i~l~gg~~~~~---~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l 110 (309)
T TIGR00423 35 VLSLEEILEKVKEAVA-KGATEVCIQGGLNPQL---DIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVL 110 (309)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCC---CHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHH
Confidence 3566777777765443 4666655553222321 13344555566666542 33333321 1 24555
Q ss_pred HHHHHcCCCeeE-e-------ccc--ccccccchh--HHHHHHHHHcCCeEEEeccccC
Q 014906 239 RIILENGIPVVS-N-------QVQ--HSVVDMRPQ--QKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 239 ~~~~~~g~~~~~-~-------Q~~--~n~l~~~~~--~~ll~~~~~~gi~via~spL~~ 285 (416)
+++.+.|..-.. + ++. +.+-....+ .+.++.+++.|+.+.+.--++.
T Consensus 111 ~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~ 169 (309)
T TIGR00423 111 KRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGH 169 (309)
T ss_pred HHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecC
Confidence 666655532110 0 000 100000111 3688899999998886665543
No 183
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.80 E-value=3.3e+02 Score=25.28 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=27.6
Q ss_pred CeeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 247 ~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
.+.++=-+||++|....-++.+..++.|+.|+...
T Consensus 185 ~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~d 219 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITED 219 (221)
T ss_pred eEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCcc
Confidence 35555567999888777799999999999998643
No 184
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.73 E-value=2.1e+02 Score=24.82 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=38.0
Q ss_pred EEEccCCCH--HHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccCcc
Q 014906 227 TVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 227 ~iGvSn~~~--~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~ 287 (416)
.+|+..|+. ..+..+++.. -|+++..... +.+ ++++..+.+.++.+|.-|.+.++.
T Consensus 19 k~GlDgHd~gakvia~~l~d~-GfeVi~~g~~---~tp-~e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADA-GFEVINLGLF---QTP-EEAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred ccCccccccchHHHHHHHHhC-CceEEecCCc---CCH-HHHHHHHHhcCCCEEEEEeccchH
Confidence 567777764 6666666542 3554433322 334 578888899999999999998875
No 185
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=27.67 E-value=3.7e+02 Score=27.53 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeec---ccCCCCCCCCHHHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLT---KWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin-~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~t---k~~~~~~~~~~~~v~~~le 183 (416)
.+.+.-.+=+..|.+.|-. +.|-+.. |+-..+--..|+..+.+ +-++-+.. +......+++.+.+.+.+|
T Consensus 73 ~d~~~E~~K~~~A~~~GADtvMDLStg-gdl~~iR~~il~~~~vp-----vGTVPiYqa~~~~~~~~~~~t~d~~~~~ie 146 (420)
T PF01964_consen 73 SDIEEELEKLKIAEKAGADTVMDLSTG-GDLDEIRRAILENSPVP-----VGTVPIYQAAIRKGGSIVDMTEDDFFDVIE 146 (420)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---S-TTHHHHHHHHHHT-SS------EEE-HHHHHHHHTTT-GGG--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCC-CCHHHHHHHHHHhCCCc-----cccchHHHHHHHhCCChhhCCHHHHHHHHH
Confidence 3556666778899999977 4565544 55444322333332211 11221111 1122234678999999998
Q ss_pred HHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH-cCCCeeEecccccccccch
Q 014906 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDMRP 262 (416)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~-~g~~~~~~Q~~~n~l~~~~ 262 (416)
+..+. =+|.+-+|.-- +.+.++.++++|++ .|+-+-+..-+...+. ++ .-|++. ..
T Consensus 147 ~qa~~----GVDfmtiH~gi--------t~~~~~~~~~~~R~--~giVSRGGs~l~~WM~~n~--------~ENPly-~~ 203 (420)
T PF01964_consen 147 KQAKD----GVDFMTIHCGI--------TRETLERLKKSGRI--MGIVSRGGSILAAWMLHNG--------KENPLY-EH 203 (420)
T ss_dssp HHHHH----T--EEEE-TT----------GGGGGGGT--TSS--S----HHHHHHHHHHHHHT--------S--HHH-HT
T ss_pred HHHHc----CCCEEEEccch--------hHHHHHHHhhhccc--cCccccchHHHHHHHHhcC--------CcCcHH-Hh
Confidence 87764 37888899642 24555788888775 4555555555544333 32 445553 33
Q ss_pred hHHHHHHHHHcCCeEEEeccccCc
Q 014906 263 QQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 263 ~~~ll~~~~~~gi~via~spL~~G 286 (416)
-+++++.|+++++.+---..|-.|
T Consensus 204 fD~lLeI~k~yDVtLSLGDglRPG 227 (420)
T PF01964_consen 204 FDRLLEIAKEYDVTLSLGDGLRPG 227 (420)
T ss_dssp HHHHHHHHTTTT-EEEE--TT--S
T ss_pred HHHHHHHHHHhCeeEecccccCCC
Confidence 458999999999998644444333
No 186
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=27.45 E-value=3.9e+02 Score=23.96 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHc--CcccEEEccCCCH--HHHHHHHHcCCCee
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDT--ERLRIILENGIPVV 249 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~--GkIr~iGvSn~~~--~~l~~~~~~g~~~~ 249 (416)
+++...+-++ .| -+.+|++-+-++- ......+.++++++. +..-.+++--.++ .+++++.+.|.++.
T Consensus 10 ~~~~a~~~~~----~l-~~~v~~iev~~~l----~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i 80 (206)
T TIGR03128 10 DIEEALELAE----KV-ADYVDIIEIGTPL----IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIV 80 (206)
T ss_pred CHHHHHHHHH----Hc-ccCeeEEEeCCHH----HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEE
Confidence 4454444444 35 3567777664331 133346677777776 3333333322244 36788888776655
Q ss_pred EecccccccccchhHHHHHHHHHcCCeEEE
Q 014906 250 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 250 ~~Q~~~n~l~~~~~~~ll~~~~~~gi~via 279 (416)
+++..-. ...-.+++++|+++|+.++.
T Consensus 81 ~vh~~~~---~~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 81 TVLGVAD---DATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred EEeccCC---HHHHHHHHHHHHHcCCEEEE
Confidence 5443321 11124789999999998875
No 187
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.36 E-value=1.9e+02 Score=28.71 Aligned_cols=96 Identities=7% Similarity=-0.024 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcc-cEEEccCCCHHHHHHHHHcCCCeeEe
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSN 251 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkI-r~iGvSn~~~~~l~~~~~~g~~~~~~ 251 (416)
++.+...+.+++ |+.+ ++.+|..|-... -++.+.+|++.--| -+.|=+.++++.++.+++.+ -++++
T Consensus 197 ~~~~~A~~~~~~-l~~~-----~i~~iEeP~~~~-----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~i 264 (355)
T cd03321 197 LTVPEAIERGQA-LDQE-----GLTWIEEPTLQH-----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAG-ACDLV 264 (355)
T ss_pred cCHHHHHHHHHH-HHcC-----CCCEEECCCCCc-----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC-CCCeE
Confidence 466654444443 3433 455566664322 35666777776443 25666778999999998865 47888
Q ss_pred ccccccccc-chhHHHHHHHHHcCCeEEEe
Q 014906 252 QVQHSVVDM-RPQQKMAELCQLTGVKLITY 280 (416)
Q Consensus 252 Q~~~n~l~~-~~~~~ll~~~~~~gi~via~ 280 (416)
|+..+..-- ..-..+.+.|+.+|+.++..
T Consensus 265 ~~~~~~~GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 265 MPDLMKIGGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred ecCHhhhCCHHHHHHHHHHHHHcCCeeccc
Confidence 888775321 12237899999999998643
No 188
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=27.33 E-value=1.5e+02 Score=29.51 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=57.0
Q ss_pred HHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEE
Q 014906 119 RYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQ 198 (416)
Q Consensus 119 ~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~ 198 (416)
..-+.|+.|.|.. |. --..++-+.......+++.+++-... .-..+.+.+.+..++. +.+|.+-+ +=
T Consensus 11 ~~E~~G~~f~~~~---G~----~~d~~~ilk~~G~N~vRlRvwv~P~~---~g~~~~~~~~~~akra-k~~Gm~vl--ld 77 (332)
T PF07745_consen 11 EMEAAGVKFYDEN---GQ----EKDLFQILKDHGVNAVRLRVWVNPYD---GGYNDLEDVIALAKRA-KAAGMKVL--LD 77 (332)
T ss_dssp HHHHTT---B-TT---SS----B--HHHHHHHTT--EEEEEE-SS-TT---TTTTSHHHHHHHHHHH-HHTT-EEE--EE
T ss_pred HHHHcCCeEECCC---CC----CCCHHHHHHhcCCCeEEEEeccCCcc---cccCCHHHHHHHHHHH-HHCCCeEE--Ee
Confidence 3446788877733 32 25667666666554455554443322 1234677777776653 45665421 33
Q ss_pred ecc----CCCCCccHHHHHHHH--HHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccc
Q 014906 199 FHW----WDYSNPGYLDALNHL--TDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (416)
Q Consensus 199 lH~----pd~~~~~~~e~~~aL--~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~ 254 (416)
+|. .|+.......+|+.+ .+|.+. |.+|+.+.|..+.+.|+.|+.||+-
T Consensus 78 fHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~-------v~~yT~~vl~~l~~~G~~pd~VQVG 132 (332)
T PF07745_consen 78 FHYSDFWADPGKQNKPAAWANLSFDQLAKA-------VYDYTKDVLQALKAAGVTPDMVQVG 132 (332)
T ss_dssp E-SSSS--BTTB-B--TTCTSSSHHHHHHH-------HHHHHHHHHHHHHHTT--ESEEEES
T ss_pred ecccCCCCCCCCCCCCccCCCCCHHHHHHH-------HHHHHHHHHHHHHHCCCCccEEEeC
Confidence 554 233333344445432 444444 6778888899998889999999975
No 189
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=27.04 E-value=4.2e+02 Score=26.69 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHHcCCeEEEeccccCc
Q 014906 213 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 213 ~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL~~G 286 (416)
...+..+...+-+.-.-+...+.+.+++++....+..++..+.|+.-. ...+.+.+.|+++|+.++.-...+.+
T Consensus 105 ~~~~~~~~~~~gi~v~~vd~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 105 YRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred HHHHHHHHhhCCeEEEEeCCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 333344443343332223345666666665433445555556665321 23346777888888877766655544
No 190
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.00 E-value=65 Score=27.43 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHcCCeEEEecccc
Q 014906 260 MRPQQKMAELCQLTGVKLITYGTVM 284 (416)
Q Consensus 260 ~~~~~~ll~~~~~~gi~via~spL~ 284 (416)
+..-.+++++|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4445689999999999999998775
No 191
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=26.91 E-value=5.2e+02 Score=25.97 Aligned_cols=90 Identities=11% Similarity=0.073 Sum_probs=51.7
Q ss_pred ccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccc-cchhHHHHHHHH
Q 014906 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQ 271 (416)
Q Consensus 193 yiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~-~~~~~~ll~~~~ 271 (416)
.=|-+++..+. +..++..+..+.+.-.++..-+...+++.+++.+....+..++..+.|+.- ...-+.+.+.|+
T Consensus 99 ~Gd~Vl~~~~~-----y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~ 173 (388)
T PRK07811 99 PGDHIVIPNDA-----YGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAH 173 (388)
T ss_pred CCCEEEEcCCC-----chHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHH
Confidence 34556665443 333444444332221233333333577888877654455666667777642 223357899999
Q ss_pred HcCCeEEEeccccCcc
Q 014906 272 LTGVKLITYGTVMGGL 287 (416)
Q Consensus 272 ~~gi~via~spL~~G~ 287 (416)
++|+.++.-...+.+.
T Consensus 174 ~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 174 DAGAKVVVDNTFASPY 189 (388)
T ss_pred HcCCEEEEECCCCccc
Confidence 9999999777665553
No 192
>PRK00077 eno enolase; Provisional
Probab=26.87 E-value=7.1e+02 Score=25.57 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC--cccEEEcc--CCCHHHHHHHHHcCCCe
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALT--NFDTERLRIILENGIPV 248 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G--kIr~iGvS--n~~~~~l~~~~~~g~~~ 248 (416)
++++.+...+.+.++.+ ++++|-.|-... -|+.+.+|.++- +|.-+|== ..+++.++.+++.+ -.
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~-----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~-a~ 329 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN-----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKG-AA 329 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc-----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhC-CC
Confidence 46666666666666554 567777775432 266667777663 45544422 34699999998865 36
Q ss_pred eEeccccccccc-chhHHHHHHHHHcCCeEEE
Q 014906 249 VSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 279 (416)
Q Consensus 249 ~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via 279 (416)
+++|+..+-+-- ..-.++...|+.+|+.++.
T Consensus 330 d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 330 NSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 777777775321 1223789999999998664
No 193
>PLN02681 proline dehydrogenase
Probab=26.68 E-value=7.5e+02 Score=25.78 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCC-EEECCCCCCc--cHHHHHHHHHhhhcC-CCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHh
Q 014906 112 DAVDAMLRYADAGLT-TFDMADHYGP--AEDLYGIFINRVRRE-RPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin-~fDTA~~YG~--sE~~lG~al~~~~r~-r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~ 187 (416)
...++.+.|.+.|+. .||.=+.|=+ -..+.-+..++..++ ..+.+... +...+ .-+++.+...++.+.+
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T--~QaYL-----k~t~~~l~~~l~~a~~ 293 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGT--YQAYL-----KDARERLRLDLERSER 293 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEE--EeCcc-----ccCHHHHHHHHHHHHh
Confidence 466788999999999 5664333211 133333333333221 11122222 12211 1266777777776654
Q ss_pred h---cCC-----CccceE-----EeccCCCCCcc-------HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH----
Q 014906 188 R---MDV-----PCLDML-----QFHWWDYSNPG-------YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE---- 243 (416)
Q Consensus 188 r---Lg~-----dyiDl~-----~lH~pd~~~~~-------~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~---- 243 (416)
+ +|+ -|+|-= ++.||++..+. +..+++.|-+-...|. .++.|.+|+.+.+..+++
T Consensus 294 ~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~~~ 372 (455)
T PLN02681 294 EGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKMNE 372 (455)
T ss_pred cCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHHHH
Confidence 3 232 244421 22333332221 3344444433333354 388999999988776654
Q ss_pred cCCCeeEecccccccccchhHHHHHHHHHcCCeEEEeccccC
Q 014906 244 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 244 ~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~ 285 (416)
.|+++.-..++|-.+. ...+.+-....+.|..|.-|-|.+.
T Consensus 373 ~gi~~~~~~veF~qL~-GM~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 373 LGLHKGDPRVQFAQLL-GMSDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred cCCCCCCCCEEEeccC-CCCHHHHHHHHhcCCCEEEEeeccC
Confidence 3555443344444442 2223445555667999999998863
No 194
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.50 E-value=2.4e+02 Score=24.86 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcC-cccEEEccCCC--HHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 209 YLDALNHLTDLKEEG-KIKTVALTNFD--TERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 209 ~~e~~~aL~~l~~~G-kIr~iGvSn~~--~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
..+.+++|.++++.| +|-.+|..|.. ...+.+++ ++ ...+..|+ +...-+..+..+++.|+.++.-+
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--~~--~i~~~~~~--~~~e~~~~i~~~~~~G~~viVGg 132 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--GV--DIKIYPYD--SEEEIEAAIKQAKAEGVDVIVGG 132 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--T---EEEEEEES--SHHHHHHHHHHHHHTT--EEEES
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--CC--ceEEEEEC--CHHHHHHHHHHHHHcCCcEEECC
Confidence 667889999888777 56666666553 46666665 32 33333443 12223468888889999988744
No 195
>PTZ00413 lipoate synthase; Provisional
Probab=26.12 E-value=7.2e+02 Score=25.41 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHc--CcccEEEccCC--CHHHHHHHHHcCCC
Q 014906 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNF--DTERLRIILENGIP 247 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~--GkIr~iGvSn~--~~~~l~~~~~~g~~ 247 (416)
-.+++.+.+..+ ..+++|+.|+=+-....+|..+.+.+...++++.+++. +..-.+=+.-| +.+.++.+++.|+.
T Consensus 176 ~lD~eEp~~vA~-av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~d 254 (398)
T PTZ00413 176 PLDPNEPEKVAK-AVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLS 254 (398)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCC
Confidence 457888877777 77889988762222222333334466677777888875 33323333345 78899999987643
Q ss_pred eeEeccc-----ccccc-c--chh--HHHHHHHHHc---CCeEEEeccccCc
Q 014906 248 VVSNQVQ-----HSVVD-M--RPQ--QKMAELCQLT---GVKLITYGTVMGG 286 (416)
Q Consensus 248 ~~~~Q~~-----~n~l~-~--~~~--~~ll~~~~~~---gi~via~spL~~G 286 (416)
.--..++ |.-+. . ..+ -++++.+++. |+.+-..--++-|
T Consensus 255 vynHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLG 306 (398)
T PTZ00413 255 VYAHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLG 306 (398)
T ss_pred EEecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCC
Confidence 3222222 22221 1 112 2688888876 5555444444433
No 196
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=26.09 E-value=6.6e+02 Score=24.95 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeeccc------------------CCC
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKW------------------VPP 169 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~------------------~~~ 169 (416)
.+.++...+.+.+-+.|+.+|=|... ++-+ +.+.+..-+ -+|+++.- ...
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd----~~sv-d~l~~~~v~-------~~KIaS~~~~n~pLL~~~A~~gkPvilSt 140 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFD----LESA-DFLEDLGVP-------RFKIPSGEITNAPLLKKIARFGKPVILST 140 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCC----HHHH-HHHHhcCCC-------EEEECcccccCHHHHHHHHhcCCcEEEEC
Confidence 56788899999999999999866543 1111 222221111 12222110 001
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCC-CCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHH--cCC
Q 014906 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE--NGI 246 (416)
Q Consensus 170 ~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~-~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~--~g~ 246 (416)
. -.+.+.+..+++...+ -|.+.-|+.++|.... ..+...--+.++..|++.=. .-||+|.|+.....-+.. .|-
T Consensus 141 G-matl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAvalGA 217 (329)
T TIGR03569 141 G-MATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVALGA 217 (329)
T ss_pred C-CCCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHHcCC
Confidence 1 1367888888888653 3533225899997542 12212224566666665433 469999998654333332 342
Q ss_pred CeeEecccccc
Q 014906 247 PVVSNQVQHSV 257 (416)
Q Consensus 247 ~~~~~Q~~~n~ 257 (416)
.++.-++.+
T Consensus 218 --~iIEkH~tl 226 (329)
T TIGR03569 218 --TVIEKHFTL 226 (329)
T ss_pred --CEEEeCCCh
Confidence 245545543
No 197
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.01 E-value=2.4e+02 Score=27.98 Aligned_cols=147 Identities=15% Similarity=0.149 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCCCEEECCCCCCcc--HHHHHHHHHh-hhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHHh
Q 014906 111 DDAVDAMLRYADAGLTTFDMADHYGPA--EDLYGIFINR-VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (416)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~s--E~~lG~al~~-~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL~ 187 (416)
++..+.+..+.+.|++.|=.=- +.. .+.+ +++++ .+ .. .+.++ .+ ..++.+... . ++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g--~~-~l~lD--------aN-~~~~~~~a~-~----~~ 198 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFP--DI-PLMAD--------AN-SAYTLADIP-L----LK 198 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCC--CC-eEEEE--------CC-CCCCHHHHH-H----HH
Confidence 6677788888899998763211 121 2222 22322 22 11 22221 11 123555432 2 33
Q ss_pred hcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCc-ccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHH
Q 014906 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQK 265 (416)
Q Consensus 188 rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk-Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ 265 (416)
+| +..++.++-.|-. .+-++.+.++++.-. =-+.|=|-++.+.++.+++.+ -++++|+..+..-- ..-..
T Consensus 199 ~l--~~~~i~~iEeP~~-----~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~ 270 (354)
T cd03317 199 RL--DEYGLLMIEQPLA-----ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALK 270 (354)
T ss_pred Hh--hcCCccEEECCCC-----hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHH
Confidence 33 2345666666643 223556666765533 236777889999999999865 46788887765321 12247
Q ss_pred HHHHHHHcCCeEEEeccccC
Q 014906 266 MAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 266 ll~~~~~~gi~via~spL~~ 285 (416)
+...|+.+|+.++..+....
T Consensus 271 i~~~A~~~gi~~~~g~~~es 290 (354)
T cd03317 271 IHDLCQEHGIPVWCGGMLES 290 (354)
T ss_pred HHHHHHHcCCcEEecCcccc
Confidence 89999999999987554433
No 198
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=25.84 E-value=6.4e+02 Score=24.75 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=18.5
Q ss_pred HHHHHHHHcCcccEEEccCC-CHHHHHHHHHcC
Q 014906 214 NHLTDLKEEGKIKTVALTNF-DTERLRIILENG 245 (416)
Q Consensus 214 ~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g 245 (416)
+.+.++++.=.|--++..+. +++..+++++.+
T Consensus 280 ~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 280 PFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 44455555555556666654 566666666654
No 199
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=25.79 E-value=7.2e+02 Score=25.32 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=29.8
Q ss_pred cceEEeccCCCCCc---cHHHHHHHHHHH-------HHcCcccEEEccCC---CHHHHHHHHH-cCCCe
Q 014906 194 LDMLQFHWWDYSNP---GYLDALNHLTDL-------KEEGKIKTVALTNF---DTERLRIILE-NGIPV 248 (416)
Q Consensus 194 iDl~~lH~pd~~~~---~~~e~~~aL~~l-------~~~GkIr~iGvSn~---~~~~l~~~~~-~g~~~ 248 (416)
+.++.+|.|+.... +++.++++|-+. ++.++|--||-++. +.+.++++++ .|+++
T Consensus 117 ~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v 185 (428)
T cd01965 117 FPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEP 185 (428)
T ss_pred CeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCE
Confidence 55666777765422 244455454432 23456777765554 3567777666 35443
No 200
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=25.65 E-value=2.4e+02 Score=28.73 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=15.0
Q ss_pred HHHHHHHhhh------------hcCCCCHHHHHHHHH
Q 014906 371 AEHIQDTNAI------------FMLSLDEDDVNSIQE 395 (416)
Q Consensus 371 ~e~l~en~~a------------~~~~Lt~ee~~~L~~ 395 (416)
|.|+..++.. ++..-|++|++..-+
T Consensus 333 pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~ 369 (386)
T COG1104 333 PSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAE 369 (386)
T ss_pred ccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHH
Confidence 7777666642 233567788766543
No 201
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.48 E-value=5.7e+02 Score=24.06 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCeEEEec
Q 014906 264 QKMAELCQLTGVKLITYG 281 (416)
Q Consensus 264 ~~ll~~~~~~gi~via~s 281 (416)
+..++.|++.|..++...
T Consensus 97 ~~~i~~a~~lG~~~v~~~ 114 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLA 114 (279)
T ss_pred HHHHHHHHHhCCCEEEec
Confidence 478899999999988753
No 202
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=25.42 E-value=6.4e+02 Score=24.60 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhh
Q 014906 332 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNA 379 (416)
Q Consensus 332 ~~l~~ia~~~g~------s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~ 379 (416)
.+|.++|++.|. ++.++=..|+-... .+.+-.|+|+ |+.+-+++-
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGASt--Pd~lV~~Vi 278 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAST--PDWLVQEVI 278 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCC--CHHHHHHHH
Confidence 688899999886 77888899988855 4567789999 998876553
No 203
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=24.97 E-value=4e+02 Score=24.76 Aligned_cols=74 Identities=12% Similarity=0.103 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCCCC---ccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHH
Q 014906 107 RIDRDDAVDAMLRYADAGLTTFDMADHYG---PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG---~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le 183 (416)
..++++..++.+.+++.|..|+=|+..|+ .+.+.+....+..+ . .+ .++..--. .+.+.+.+-++
T Consensus 132 ~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~-~---~~--~IKasGGI------rt~~~a~~~i~ 199 (221)
T PRK00507 132 LLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVG-P---RV--GVKASGGI------RTLEDALAMIE 199 (221)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-C---Cc--eEEeeCCc------CCHHHHHHHHH
Confidence 35678888999999999999999998883 24433333333322 2 12 22222111 15677777777
Q ss_pred HHHhhcCCC
Q 014906 184 VSRRRMDVP 192 (416)
Q Consensus 184 ~SL~rLg~d 192 (416)
.--.|+|++
T Consensus 200 aGA~riGtS 208 (221)
T PRK00507 200 AGATRLGTS 208 (221)
T ss_pred cCcceEccC
Confidence 666666664
No 204
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=24.96 E-value=3.7e+02 Score=26.07 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHh
Q 014906 332 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 378 (416)
Q Consensus 332 ~~l~~ia~~~g~------s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~ 378 (416)
..|.++|+++|. +..++-..|.-... .+.+..|+|+ |+.+-+.+
T Consensus 224 ~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGAST--P~~li~eV 273 (280)
T TIGR00216 224 TRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGAST--PDWIIEEV 273 (280)
T ss_pred HHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCC--CHHHHHHH
Confidence 678889998874 88899999987665 4678899999 99886543
No 205
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.89 E-value=3e+02 Score=25.01 Aligned_cols=68 Identities=21% Similarity=0.258 Sum_probs=42.6
Q ss_pred HHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEeccccc-ccccchhHHHHHHHHHcCCeEEEeccccCc
Q 014906 217 TDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 217 ~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n-~l~~~~~~~ll~~~~~~gi~via~spL~~G 286 (416)
.+|.+.|- ..+-..-.+++.|.++++ |+...++-+..+ .-.......++++|++.||..+.+|-++..
T Consensus 38 ~~l~~~g~-~vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 38 QQLQALGA-EVVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHTTT-EEEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhcccc-eEeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEeccc
Confidence 45566666 355555557888888776 555444444433 222233457999999999999999988764
No 206
>PRK12928 lipoyl synthase; Provisional
Probab=24.83 E-value=6.4e+02 Score=24.41 Aligned_cols=104 Identities=9% Similarity=0.101 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC-cccEEEc--cCC---CHHHHHHHHHc
Q 014906 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVAL--TNF---DTERLRIILEN 244 (416)
Q Consensus 171 ~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-kIr~iGv--Sn~---~~~~l~~~~~~ 244 (416)
...+++.+.+.++ .+.++|+.+|-|.-.+..|....+.....+.++.+++.. -+ .|.+ ..+ ..+.+..+.+.
T Consensus 85 ~~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 85 MPLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred CCCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHc
Confidence 4568899998888 588889999888777654422222233334445555542 22 2222 222 34667777776
Q ss_pred CCCeeEecc--c-----ccccccc--hh--HHHHHHHHHcC--CeEE
Q 014906 245 GIPVVSNQV--Q-----HSVVDMR--PQ--QKMAELCQLTG--VKLI 278 (416)
Q Consensus 245 g~~~~~~Q~--~-----~n~l~~~--~~--~~ll~~~~~~g--i~vi 278 (416)
|. .+.+. + +..+.+. .+ .++++.+++.| +.+-
T Consensus 163 g~--~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~ 207 (290)
T PRK12928 163 KP--DVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTK 207 (290)
T ss_pred Cc--hhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceec
Confidence 52 11111 1 1111111 11 36888999988 5443
No 207
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=24.78 E-value=8.4e+02 Score=25.75 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=48.5
Q ss_pred cceEEeccCCCCCcc---HHHHHHHHHHH---------------HHcCcccEEEccC------CCHHHHHHHHHc-CCCe
Q 014906 194 LDMLQFHWWDYSNPG---YLDALNHLTDL---------------KEEGKIKTVALTN------FDTERLRIILEN-GIPV 248 (416)
Q Consensus 194 iDl~~lH~pd~~~~~---~~e~~~aL~~l---------------~~~GkIr~iGvSn------~~~~~l~~~~~~-g~~~ 248 (416)
++++.+|.|...... .+.+++++-+. +..++|--||.++ .+.+.++++++. |+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 689999998764322 22233333321 1346788998774 245667777763 4433
Q ss_pred eEec--------------ccccccc-cchhHHHHHHHH-HcCCeEEEecccc
Q 014906 249 VSNQ--------------VQHSVVD-MRPQQKMAELCQ-LTGVKLITYGTVM 284 (416)
Q Consensus 249 ~~~Q--------------~~~n~l~-~~~~~~ll~~~~-~~gi~via~spL~ 284 (416)
-++- -..|+.- +.....+.++.+ +.|+.++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 2111 1133321 112234555555 4589888777764
No 208
>PRK08123 histidinol-phosphatase; Reviewed
Probab=24.67 E-value=6.1e+02 Score=24.06 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCCEEECCCC
Q 014906 112 DAVDAMLRYADAGLTTFDMADH 133 (416)
Q Consensus 112 ~~~~~l~~Al~~Gin~fDTA~~ 133 (416)
...+.+++|++.|+..|=.+++
T Consensus 20 ~~e~~v~~Ai~~Gl~~i~~tdH 41 (270)
T PRK08123 20 DLEAYIERAIELGFTEITFTEH 41 (270)
T ss_pred CHHHHHHHHHHcCCcEEEEecc
Confidence 4688999999999998766666
No 209
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=24.66 E-value=6.2e+02 Score=24.13 Aligned_cols=156 Identities=11% Similarity=0.137 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHcCCCEEECCCCCCc--cHHH--HHHHHHh-hhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHH
Q 014906 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDL--YGIFINR-VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (416)
Q Consensus 111 ~~~~~~l~~Al~~Gin~fDTA~~YG~--sE~~--lG~al~~-~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~S 185 (416)
+...+.++.--+.|..+|..++.=|. .+.- ++..|++ .+.+ .+ ..++. .+.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~----~i--~Hlt~------r~~n~~~l~~~L~~~ 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP----TV--PHLTC------IGATREEIREILREY 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC----ee--EEeee------cCCCHHHHHHHHHHH
Confidence 45566666666889999999887652 1222 2333432 1211 11 11111 134777888888754
Q ss_pred HhhcCCCccceEEecc-CC-----CCCccHHHHHHHHHHHHHcCcccEEEccCCCH---------HHHHHHH---HcCCC
Q 014906 186 RRRMDVPCLDMLQFHW-WD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------ERLRIIL---ENGIP 247 (416)
Q Consensus 186 L~rLg~dyiDl~~lH~-pd-----~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~---------~~l~~~~---~~g~~ 247 (416)
..+|++.+ +.|-. +. .....+..+.+-++.+++..---+||+..|.. +.++.+. +.|..
T Consensus 83 -~~~Gi~nv--L~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 -RELGIRHI--LALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred -HHCCCCEE--EEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 77886532 22322 21 11112344555555555542235888887521 3344343 35777
Q ss_pred eeEecccccccccchhHHHHHHHHHcCCeEEEeccccCccC
Q 014906 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 288 (416)
Q Consensus 248 ~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~spL~~G~L 288 (416)
+.+-|.-|+. ..-.++++.|++.|+.+ |+--|++
T Consensus 160 f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 160 YAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred eEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 8888888885 34457889999998775 6656653
No 210
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=24.45 E-value=3.1e+02 Score=27.92 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=55.2
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCc--c-cEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGK--I-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAEL 269 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~Gk--I-r~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~ 269 (416)
+|+.++-.|-.. +-++.+.+|++.-. | -..|=+.++...++.+++.+ -++++|+...-.-- ..-..+.+.
T Consensus 234 ~~l~wiEEPl~~-----~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~-a~Divq~d~~~~GGit~~~kia~l 307 (394)
T PRK15440 234 YGLKWIEECLPP-----DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG-CIDIIQPDVGWCGGLTELVKIAAL 307 (394)
T ss_pred cCCcceeCCCCc-----ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC-CCCEEeCCccccCCHHHHHHHHHH
Confidence 455555555422 23667777877654 2 23478888999999999865 47888888775321 122479999
Q ss_pred HHHcCCeEEEe
Q 014906 270 CQLTGVKLITY 280 (416)
Q Consensus 270 ~~~~gi~via~ 280 (416)
|+.+|+.++..
T Consensus 308 A~a~gi~~~pH 318 (394)
T PRK15440 308 AKARGQLVVPH 318 (394)
T ss_pred HHHcCCeeccc
Confidence 99999998765
No 211
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.37 E-value=5.3e+02 Score=26.03 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHc------CcccEEEccCCCHHHHHHHHHcCCC
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIP 247 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~------GkIr~iGvSn~~~~~l~~~~~~g~~ 247 (416)
+++...+.++. |++..-++ ++++-.|-.... .++-++.+.+|++. +.=-..|=|.++.+.++++++.+ -
T Consensus 210 ~~~~A~~~~~~-Le~~~~~~--~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a 284 (369)
T cd03314 210 DPDRAADYLAT-LEEAAAPF--PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-A 284 (369)
T ss_pred CHHHHHHHHHH-HHHhcCCC--cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-C
Confidence 55554444433 33331122 456776654221 22346677777766 45456777888999999999865 4
Q ss_pred eeEeccccccccc-chhHHHHHHHHHcCCeEEEecc
Q 014906 248 VVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 248 ~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~sp 282 (416)
.+++|+..+-.-- ..-..+.+.|+.+|+.++..+.
T Consensus 285 ~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 285 AHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGS 320 (369)
T ss_pred CCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCC
Confidence 7888888775321 1224789999999999998653
No 212
>PRK09726 antitoxin HipB; Provisional
Probab=24.30 E-value=85 Score=24.38 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCH
Q 014906 330 LLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDE 387 (416)
Q Consensus 330 ~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ 387 (416)
+...|+.+.++.|+|..++|-+--++++.+.-..-|.+..+.+.+...+.+++.+++-
T Consensus 13 l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~ 70 (88)
T PRK09726 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcch
Confidence 3356666667777777777755555554444333343333477788878877766443
No 213
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.24 E-value=1.9e+02 Score=26.00 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccc
Q 014906 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (416)
Q Consensus 209 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~ 257 (416)
+..+++.|.-.++.||+-++|+-|.+--.+..+++.. ..+..|--.+|
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHP 54 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHP 54 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccc-cccccCCCcCC
Confidence 6778899999999999999999999999998888753 45555555554
No 214
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=24.01 E-value=4.8e+02 Score=25.34 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHh
Q 014906 332 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 378 (416)
Q Consensus 332 ~~l~~ia~~~g~------s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~ 378 (416)
..|.++|++.+. ++.++-..|+.... .+.+..|+|+ |+.+-+.+
T Consensus 225 ~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGAST--P~~li~eV 274 (281)
T PRK12360 225 QKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGAST--PDWIIEEV 274 (281)
T ss_pred HHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCC--CHHHHHHH
Confidence 678888988774 78888899987764 4577899999 99886544
No 215
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=23.96 E-value=8e+02 Score=25.17 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=37.1
Q ss_pred ccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHHcCCeEEEeccccC
Q 014906 225 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 225 Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL~~ 285 (416)
++-+-+...+++.+++++....+..++..+.|+.-. ...+++.+.|+++|+.++.-.+++.
T Consensus 129 v~v~~vd~~d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~ 190 (431)
T PRK08248 129 ITVKFVDPSDPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFAS 190 (431)
T ss_pred EEEEEECCCCHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 344444444677777776544455555555565322 2234788889999988886666553
No 216
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.89 E-value=4.4e+02 Score=24.56 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le 183 (416)
+.+++.++.+..++.||+.|.-+..=-++.+.+.+..+....+.. ++ .+..+|-+ ++++++.+++
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~--~vGaGTVl-------~~e~a~~a~~ 89 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GM--ILGVGSIV-------DAATAALYIQ 89 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-Ce--EEeeEeCc-------CHHHHHHHHH
Confidence 678999999999999999999877544455555443333323222 23 23444433 5666666554
No 217
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.64 E-value=5.2e+02 Score=26.19 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=60.2
Q ss_pred ceEEeccCCCC----------CccHHHHHHHHHHHH-HcCc---ccEEEccCC--CHHHHHHHHH--cCC---CeeEecc
Q 014906 195 DMLQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALTNF--DTERLRIILE--NGI---PVVSNQV 253 (416)
Q Consensus 195 Dl~~lH~pd~~----------~~~~~e~~~aL~~l~-~~Gk---Ir~iGvSn~--~~~~l~~~~~--~g~---~~~~~Q~ 253 (416)
=.+.||.++.. ...++++++++.+.. +.|+ |.|+=+.++ +.+.++++.+ .+. +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34778987643 123788999988776 4454 556666644 5555555554 234 5788999
Q ss_pred cccccccc----h----hHHHHHHHHHcCCeEEEeccccC
Q 014906 254 QHSVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 254 ~~n~l~~~----~----~~~ll~~~~~~gi~via~spL~~ 285 (416)
+||++... + -..+.+..+++||.+......+.
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 99996421 1 12577788899999998877654
No 218
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=23.54 E-value=2.3e+02 Score=25.68 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=40.5
Q ss_pred HHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEecccccc
Q 014906 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 257 (416)
Q Consensus 185 SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n~ 257 (416)
.+..+|+||+=+.+ +|..... -..+.+.++.+.-..+.+||. |-+++.+.++.+. ..++++|++-+-
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~---v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~-~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRY---VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEE-LGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB-----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHH-CTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCc---cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHH-cCCCEEEECCCC
Confidence 34558999988863 3432111 124445566655555589976 5677888887765 479999987764
No 219
>PRK08508 biotin synthase; Provisional
Probab=23.11 E-value=6.7e+02 Score=23.98 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcC-cccEEE-ccCCCHHHHHHHHHcC
Q 014906 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVA-LTNFDTERLRIILENG 245 (416)
Q Consensus 173 ~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~G-kIr~iG-vSn~~~~~l~~~~~~g 245 (416)
.+++.|.+.+++..+ .|...+-+.. -+.......++-..+.++.+++++ .+.-+. ....+.+.++++.+.|
T Consensus 40 ~s~eeI~~~a~~a~~-~g~~~~~lv~-sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aG 112 (279)
T PRK08508 40 KDIEQIVQEAKMAKA-NGALGFCLVT-SGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAG 112 (279)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEEEe-ccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcC
Confidence 355666666555433 3443333321 001001112444555555555554 222111 1112456666665544
No 220
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=22.76 E-value=4.6e+02 Score=26.07 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=37.3
Q ss_pred ccEEEccCCCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHHcCCeEEEeccccCcc
Q 014906 225 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 225 Ir~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL~~G~ 287 (416)
++..-+...+++.+++.+....+..++..+.|+.-. ..-+.+.+.|+++|+.++.-.+.+.+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 334444444666776665433455556666776422 223468888888888888666654443
No 221
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=22.65 E-value=2.5e+02 Score=27.20 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=60.9
Q ss_pred CcccEEEccCCCHHHHHHHHH---cCCCeeEeccccccccc---chhHHHHHHHHHcCCeEEEeccccCccCCCcccCCC
Q 014906 223 GKIKTVALTNFDTERLRIILE---NGIPVVSNQVQHSVVDM---RPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTN 296 (416)
Q Consensus 223 GkIr~iGvSn~~~~~l~~~~~---~g~~~~~~Q~~~n~l~~---~~~~~ll~~~~~~gi~via~spL~~G~L~~k~~~~~ 296 (416)
.++-.+-=++++.+.+.++.+ ...+-. ...-+|=++. .-++.+.+.+++-++-++.-+.-.+
T Consensus 155 ~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~-~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss----------- 222 (281)
T PF02401_consen 155 KKVAVVSQTTQSVEKFEEIVEALKKRFPEL-EGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS----------- 222 (281)
T ss_dssp TCEEEEE-TTS-HHHHHHHHHHHHHHSTCE-E-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H-----------
T ss_pred CeEEEEEeecccHHHHHHHHHHHHHhCccc-cCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc-----------
Confidence 477777777888877666554 112211 1112333322 2244688888887876665331110
Q ss_pred CCCCCCCCCCCCchHHHHHHhhhhcCCchhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHcCCCCeeEeecCCCCc
Q 014906 297 LSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGL 370 (416)
Q Consensus 297 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~------s~aq~aL~w~l~~~~v~~~i~G~~s~~ 370 (416)
. -..|.++|++++. ++.++-..|+-... ...+..|+|+
T Consensus 223 -------------------------------N--T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~-~VGItaGAST-- 266 (281)
T PF02401_consen 223 -------------------------------N--TRKLAEIAKEHGKPTYHIETADELDPEWLKGVK-KVGITAGAST-- 266 (281)
T ss_dssp -------------------------------H--HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-S-EEEEEE-TTS--
T ss_pred -------------------------------c--HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCC-EEEEEccCCC--
Confidence 0 1688899999874 88899999977766 5578899999
Q ss_pred HHHHHHHh
Q 014906 371 AEHIQDTN 378 (416)
Q Consensus 371 ~e~l~en~ 378 (416)
|+.+-+.+
T Consensus 267 P~~ii~eV 274 (281)
T PF02401_consen 267 PDWIIEEV 274 (281)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 99887654
No 222
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=22.52 E-value=7.7e+02 Score=24.51 Aligned_cols=152 Identities=12% Similarity=0.004 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCCcc--HHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHHH
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYGPA--EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG~s--E~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~SL 186 (416)
+.++..+.++.+.+.|++.|=.- .++.. ++ --+.++.++..-.+++.+ .+ . .+ ..++.+...+-++ .|
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~-di~~i~~vR~~~G~~~~l--~v--D--an-~~~~~~~A~~~~~-~l 212 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRR-DLKACLAVREAVGPDMRL--MH--D--GA-HWYSRADALRLGR-AL 212 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHH-HHHHHHHHHHHhCCCCeE--EE--E--CC-CCcCHHHHHHHHH-Hh
Confidence 56777888888999999988542 22211 11 111222222110001111 11 1 11 1235554443322 23
Q ss_pred hhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCccc-EEEccCCC-HHHHHHHHHcCCCeeEeccccccccc-chh
Q 014906 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFD-TERLRIILENGIPVVSNQVQHSVVDM-RPQ 263 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr-~iGvSn~~-~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~ 263 (416)
+.+ ++.++-.|-.. +-++.+.+|+++-.|- ..|=+-++ ++.++++++.+ -.+++|+..+..-- ..-
T Consensus 213 ~~~-----~l~~iEeP~~~-----~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~-a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 213 EEL-----GFFWYEDPLRE-----ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG-ATDFLRADVNLVGGITGA 281 (368)
T ss_pred hhc-----CCCeEeCCCCc-----hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC-CCCEEecCccccCCHHHH
Confidence 333 44455555321 2256677888875554 23334567 88899988865 47888888775321 223
Q ss_pred HHHHHHHHHcCCeEEEec
Q 014906 264 QKMAELCQLTGVKLITYG 281 (416)
Q Consensus 264 ~~ll~~~~~~gi~via~s 281 (416)
..+...|+++|+.++..+
T Consensus 282 ~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 282 MKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 479999999999997654
No 223
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=22.50 E-value=2.5e+02 Score=28.55 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccchh-HHHHHHHHHcC-CeEEEeccccCc
Q 014906 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 286 (416)
Q Consensus 209 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~-~~ll~~~~~~g-i~via~spL~~G 286 (416)
+..+.+.++++....-|...=+-..+.+.++++++...+..+++.+-|+.-.-.+ +.+.+.|+++| +.++.-++++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 5556666666544444444444445677888777655667888888888644333 47889999998 999998888777
Q ss_pred cCC
Q 014906 287 LLS 289 (416)
Q Consensus 287 ~L~ 289 (416)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 654
No 224
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.27 E-value=2.2e+02 Score=25.74 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=26.2
Q ss_pred ccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHH
Q 014906 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 238 (416)
Q Consensus 193 yiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l 238 (416)
.+|.+|||..+. .+..+.+.+......++.+|++++....+
T Consensus 73 ~~d~Vqlhg~e~-----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES-----PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC-----HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 378899998642 12333333333456899999998766544
No 225
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=22.02 E-value=3.3e+02 Score=25.86 Aligned_cols=98 Identities=10% Similarity=0.117 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-------CHHHHHHHHHcCCCeeEec
Q 014906 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-------DTERLRIILENGIPVVSNQ 252 (416)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-------~~~~l~~~~~~g~~~~~~Q 252 (416)
..++..|+-.| +|||++-+-|-.....+.+-+-+.++-+++-|.--+.|=+-+ ..++..+.++. .-|+++.
T Consensus 25 ~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~-lGf~~IE 102 (244)
T PF02679_consen 25 RYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKE-LGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHH-CT-SEEE
T ss_pred HHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHH-cCCCEEE
Confidence 34455555577 899999999854332212223333444455555444442211 12222222221 3366666
Q ss_pred ccccccccchhH--HHHHHHHHcCCeEEE
Q 014906 253 VQHSVVDMRPQQ--KMAELCQLTGVKLIT 279 (416)
Q Consensus 253 ~~~n~l~~~~~~--~ll~~~~~~gi~via 279 (416)
+.-..++...++ .+++.+++.|..|+.
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 665544433332 688888888877774
No 226
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=22.01 E-value=26 Score=29.66 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=11.3
Q ss_pred cccccccCcchhhhh
Q 014906 3 AMHCHFTGRNFISKS 17 (416)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (416)
.|.|||||+-.+-=+
T Consensus 31 ~M~Ch~tg~a~~~ig 45 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIG 45 (124)
T ss_pred eeeehhHHHHHHHHH
Confidence 689999999764433
No 227
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=21.91 E-value=6.1e+02 Score=25.27 Aligned_cols=25 Identities=4% Similarity=0.190 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECC
Q 014906 107 RIDRDDAVDAMLRYADAGLTTFDMA 131 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA 131 (416)
..+.++..++++.+.+.|+..|.-.
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~ 69 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFS 69 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE
Confidence 4677889999999999998877643
No 228
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.88 E-value=2.2e+02 Score=28.26 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHcCCeEEEeccccCc
Q 014906 262 PQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 262 ~~~~ll~~~~~~gi~via~spL~~G 286 (416)
+...+.++|++.||.++. ||+...
T Consensus 91 ~~~~Lke~a~~~Gi~~~S-SPfd~~ 114 (347)
T COG2089 91 WHAQLKEYARKRGIIFFS-SPFDLT 114 (347)
T ss_pred HHHHHHHHHHHcCeEEEe-cCCCHH
Confidence 445899999999998886 777543
No 229
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=21.75 E-value=1.2e+02 Score=22.35 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 014906 334 LKRIASKHGVSIPVVAVRYIL 354 (416)
Q Consensus 334 l~~ia~~~g~s~aq~aL~w~l 354 (416)
..+||+++|+++.++|..|+.
T Consensus 16 FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 16 FVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 456999999999999999975
No 230
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.75 E-value=4.8e+02 Score=26.31 Aligned_cols=78 Identities=10% Similarity=0.063 Sum_probs=52.1
Q ss_pred cHHHHHHHHHH-HHHcC---cccEEEcc--CCCHHHHHHHHH--cCCCeeEecccccccccc----h----hHHHHHHHH
Q 014906 208 GYLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMR----P----QQKMAELCQ 271 (416)
Q Consensus 208 ~~~e~~~aL~~-l~~~G---kIr~iGvS--n~~~~~l~~~~~--~g~~~~~~Q~~~n~l~~~----~----~~~ll~~~~ 271 (416)
+++++++++.+ +.+.| +|+++=+. |-+.+.+.++.+ .+.+..++-++||++... + -+.+.+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 37888888875 45556 34555555 445666766665 245567788899987432 1 135777788
Q ss_pred HcCCeEEEeccccC
Q 014906 272 LTGVKLITYGTVMG 285 (416)
Q Consensus 272 ~~gi~via~spL~~ 285 (416)
++|+.+......+.
T Consensus 340 ~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 340 DAGLQVTVRKSYGT 353 (368)
T ss_pred HCCCcEEeeCCCCc
Confidence 99999998877654
No 231
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.72 E-value=2e+02 Score=23.91 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHH-----cCCCeeEecccccccccchhHHHHHHHHHcCCeEEEecc
Q 014906 232 NFDTERLRIILE-----NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 282 (416)
Q Consensus 232 n~~~~~l~~~~~-----~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~sp 282 (416)
+-+.+.+.+.++ .++.+..+-.--++-....|..+++++++.|+.++.|++
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-H
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEECH
Confidence 345566655443 244333333333332234456899999999999999985
No 232
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=21.58 E-value=7.3e+02 Score=23.85 Aligned_cols=73 Identities=15% Similarity=0.033 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHhhc------CCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcC
Q 014906 172 KMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (416)
Q Consensus 172 ~~~~~~v~~~le~SL~rL------g~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g 245 (416)
+.+.+......+-+.+-+ ++++|-|=.+..+....++..|++++-+.|.++|-+-. =..|-++-..+++.+.|
T Consensus 80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v~a~rLed~G 158 (267)
T CHL00162 80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVL-PYINADPMLAKHLEDIG 158 (267)
T ss_pred CCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEe-ecCCCCHHHHHHHHHcC
Confidence 567777666666666655 67777777777777777789999999999999986532 23334555556655543
No 233
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=21.57 E-value=3.6e+02 Score=28.09 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=21.9
Q ss_pred HHHHcCCCHHHHHHHHHHcCCC-CeeEeec
Q 014906 337 IASKHGVSIPVVAVRYILDQPA-VAGSMIG 365 (416)
Q Consensus 337 ia~~~g~s~aq~aL~w~l~~~~-v~~~i~G 365 (416)
++-.||+|.+.-.|+|++...+ -.++++|
T Consensus 112 VaGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 112 VAGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred EeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 3455899999999999999873 3355666
No 234
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.56 E-value=6.3e+02 Score=23.12 Aligned_cols=151 Identities=7% Similarity=0.047 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEECC-CCCCc-cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHHHH
Q 014906 108 IDRDDAVDAMLRYADAGLTTFDMA-DHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (416)
Q Consensus 108 ~~~~~~~~~l~~Al~~Gin~fDTA-~~YG~-sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le~S 185 (416)
++.++..++++.-.+.||..|+.. +..+. ..+.+.+..+..+.. .+ ..... ...+.++.+++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~---~~----~~~~~-------~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA---RL----QALCR-------ANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS---EE----EEEEE-------SCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc---cc----ceeee-------ehHHHHHHHHHhh
Confidence 577889999999889999999999 33332 233344444433331 11 11111 2456666666543
Q ss_pred HhhcCCCccceEEeccCC----CCC----ccHHHHHHHHHHHHHcCcccEEEcc---CCCHHHHHHHHHc--CCCeeEec
Q 014906 186 RRRMDVPCLDMLQFHWWD----YSN----PGYLDALNHLTDLKEEGKIKTVALT---NFDTERLRIILEN--GIPVVSNQ 252 (416)
Q Consensus 186 L~rLg~dyiDl~~lH~pd----~~~----~~~~e~~~aL~~l~~~GkIr~iGvS---n~~~~~l~~~~~~--g~~~~~~Q 252 (416)
...|.+.+.++.-=++. ... ...+.+.+.++.+++.|....+++- .++++.+.++.+. ...++.+.
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 56788887776432210 000 1144566777888899988888874 4566666665541 11234343
Q ss_pred cc--ccccccchhHHHHHHHHHc
Q 014906 253 VQ--HSVVDMRPQQKMAELCQLT 273 (416)
Q Consensus 253 ~~--~n~l~~~~~~~ll~~~~~~ 273 (416)
+. +..+.+..-.+++...++.
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHH
T ss_pred eeCccCCcCHHHHHHHHHHHHHh
Confidence 33 2222222223566666653
No 235
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=21.55 E-value=1.9e+02 Score=26.90 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=35.2
Q ss_pred HcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhh
Q 014906 340 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 381 (416)
Q Consensus 340 ~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~ 381 (416)
+...|-.++|+.|++.++.-..++.|+.-+..+|+-.|+.-+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll 115 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLL 115 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHH
Confidence 457788999999999999877788888777788988888754
No 236
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=21.51 E-value=3.8e+02 Score=26.87 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=57.3
Q ss_pred EEeccCCCC----------CccHHHHHHHHHHHHHcCcccEEEcc-------CCCHHHHHHHHH--cCCCeeEecccccc
Q 014906 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGIPVVSNQVQHSV 257 (416)
Q Consensus 197 ~~lH~pd~~----------~~~~~e~~~aL~~l~~~GkIr~iGvS-------n~~~~~l~~~~~--~g~~~~~~Q~~~n~ 257 (416)
+.||.|+.. ....++.+++.+...+... +.|-+= |-+.++.+++.+ .+++..+|-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 678987532 1237778888877776555 444332 556777777776 46777999999999
Q ss_pred cccc-----hhH---HHHHHHHHcCCeEEEeccccC
Q 014906 258 VDMR-----PQQ---KMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 258 l~~~-----~~~---~ll~~~~~~gi~via~spL~~ 285 (416)
.... ..+ ...+...+.||.+.....-+.
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~ 330 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGD 330 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccc
Confidence 8532 222 455556667888887775543
No 237
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=21.30 E-value=5.7e+02 Score=25.58 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHcCCCeeEeccccccccc-chhHHHHHHHHHcCCeEEEeccccCc
Q 014906 233 FDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 286 (416)
Q Consensus 233 ~~~~~l~~~~~~g~~~~~~Q~~~n~l~~-~~~~~ll~~~~~~gi~via~spL~~G 286 (416)
.+++.++++++...+..++..+.|+.-. ..-+.+.+.|+++|+.++.-...+.+
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~ 173 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSP 173 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccc
Confidence 3566666655433445555555665322 12346777888888877766655444
No 238
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=21.07 E-value=1.6e+02 Score=28.44 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=52.8
Q ss_pred hhcCCCccceEEeccCCC-CCccHHHHHHHHHHHHHcCcccEEEccC------CCHHHHHHHHH-cCCCeeEeccccccc
Q 014906 187 RRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTN------FDTERLRIILE-NGIPVVSNQVQHSVV 258 (416)
Q Consensus 187 ~rLg~dyiDl~~lH~pd~-~~~~~~e~~~aL~~l~~~GkIr~iGvSn------~~~~~l~~~~~-~g~~~~~~Q~~~n~l 258 (416)
++..-+..|+..+..|-. ..+ +- ..++..-+ +|=|+- |+..++.++.+ .++|..++-+.||+.
T Consensus 157 kk~a~E~~~~~IIDsaaG~gCp-Vi------~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 157 KKHAKELADLLIIDSAAGTGCP-VI------ASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred HHhhhhhcceeEEecCCCCCCh-HH------HhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 334434478888887633 233 22 22232223 344432 23344445544 478999998999763
Q ss_pred ccchhHHHHHHHHHcCCeEEEeccccC
Q 014906 259 DMRPQQKMAELCQLTGVKLITYGTVMG 285 (416)
Q Consensus 259 ~~~~~~~ll~~~~~~gi~via~spL~~ 285 (416)
+ . ++.++|++.|+.+++--|+..
T Consensus 228 ~---s-~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 228 D---S-EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred c---h-HHHHHHHHcCCCeeEECCcch
Confidence 2 2 789999999999999888754
No 239
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=21.06 E-value=1.6e+02 Score=29.09 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCeEEEe
Q 014906 264 QKMAELCQLTGVKLITY 280 (416)
Q Consensus 264 ~~ll~~~~~~gi~via~ 280 (416)
...++.|+++|+-||.+
T Consensus 66 ~~f~~~a~~~gl~vilr 82 (319)
T PF01301_consen 66 DRFLDLAQENGLYVILR 82 (319)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHcCcEEEec
Confidence 47999999999998865
No 240
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=21.01 E-value=2.4e+02 Score=29.41 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=41.6
Q ss_pred HhhcCCCccceEEec-cCCCCCccHHHHHHHHHHHHHcCcccEEEcc-CCCHHHHHHHHHcCCCeeEecccccc
Q 014906 186 RRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 257 (416)
Q Consensus 186 L~rLg~dyiDl~~lH-~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvS-n~~~~~l~~~~~~g~~~~~~Q~~~n~ 257 (416)
...+|.||+=+.+.. +|.. .. . +....+.+... |+.+||- |-+++.+.++++. ..++++|++-+-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~-V~-~-~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRY-VS-L-EQAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCC-CC-H-HHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEEEeCCCC
Confidence 445788888886432 2322 11 2 23333333222 8899987 8889999988875 468999998763
No 241
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.96 E-value=5.3e+02 Score=24.57 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcCCCccceEEeccCCCCCcc----HH---HHHHHHHHHHHcCcccEEEccCCC-------HHHHHHH
Q 014906 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG----YL---DALNHLTDLKEEGKIKTVALTNFD-------TERLRII 241 (416)
Q Consensus 176 ~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~----~~---e~~~aL~~l~~~GkIr~iGvSn~~-------~~~l~~~ 241 (416)
.+..+.+++.-++.|.-|+. |.|-+.... +. .-+.-|+.+.+.| .-+++--- .+.|++.
T Consensus 74 ~~a~~~V~~~A~r~g~~yV~----~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~---~~~~tKkE~l~l~re~~kL~k~ 146 (252)
T COG0052 74 KQAQEPVKEFAERTGAYYVN----GRWLGGMLTNFKTIRKSIKRLKELEKMEEDG---FDGLTKKEALMLTRELEKLEKS 146 (252)
T ss_pred HHHHHHHHHHHHHhCCceec----CcccCccccCchhHHHHHHHHHHHHHHhhcc---cccccHHHHHHHHHHHHHHHHh
Confidence 56677777778889988776 444322111 22 2333445555665 23333211 1222222
Q ss_pred HHcCCC-----eeEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 242 LENGIP-----VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 242 ~~~g~~-----~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
+. |++ |+++- +.|+..+.-.+..|++.||+|||.-
T Consensus 147 lg-GIk~m~~~Pd~l~----ViDp~~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 147 LG-GIKDMKGLPDVLF----VIDPRKEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred hc-chhhccCCCCEEE----EeCCcHhHHHHHHHHHcCCCEEEEe
Confidence 21 333 44432 4567777788999999999999854
No 242
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.75 E-value=3.7e+02 Score=24.85 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHcCCCeeEecccccccccchhHHHHHHHHHcCCeEE
Q 014906 211 DALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (416)
Q Consensus 211 e~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~~~~gi~vi 278 (416)
+.++.+++++++.-=..||..+- +.++++.+++.|-+|.+. +....+++++|++.++.++
T Consensus 52 ~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs--------P~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 52 AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS--------PGLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC--------CCCCHHHHHHHHHcCCCEe
No 243
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=20.64 E-value=8.7e+02 Score=28.51 Aligned_cols=198 Identities=12% Similarity=0.115 Sum_probs=97.0
Q ss_pred cceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCee-Eeccc---ccccccchhHHHHHH
Q 014906 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV-SNQVQ---HSVVDMRPQQKMAEL 269 (416)
Q Consensus 194 iDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~-~~Q~~---~n~l~~~~~~~ll~~ 269 (416)
+++--.|.|....+.-...-+.|.++..+|.-+.+|.. ..+-.+++- .. +. ..+.. |-++ -.+++.+
T Consensus 262 l~~~~~~lP~f~~p~g~~~~~~L~~l~~~Gl~~Ry~~~--~~~y~~RL~-~E--L~vI~~mGf~~YFLI----V~D~i~~ 332 (1107)
T PRK06920 262 IPFHVNQLPKFPVPSNETADMYLRRVCEEGLQKRYGTP--KEVHINRLN-HE--LNVISRMGFSDYFLI----VWDFMKY 332 (1107)
T ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC--cHHHHHHHH-HH--HHHHHHCCCCcchHH----HHHHHHH
Confidence 44434455544333222234578888999998887732 222222221 11 11 11111 2221 2388999
Q ss_pred HHHcCCeE------------------EEeccccCccCCCcccCCCCC-CCCCCCCCCCchHHH-HHHhhhhcCCchhH--
Q 014906 270 CQLTGVKL------------------ITYGTVMGGLLSEKFLDTNLS-IPFAGPPLNTPSLQK-YKRMVDAWGGWSQF-- 327 (416)
Q Consensus 270 ~~~~gi~v------------------ia~spL~~G~L~~k~~~~~~~-~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 327 (416)
|+++||.| ..-.||..|+|++.+.+.... .|.-+-......-++ ......+||.....
T Consensus 333 Ak~~gI~VGPGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLNpeR~smPDIDiDF~~~rR~eVi~Yv~~kYG~~~VaqI 412 (1107)
T PRK06920 333 AHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLPDIDIDFPDTRRDEMIRYVKDKYGQLRVAQI 412 (1107)
T ss_pred HHHCCCEeCCCcchHHHHHHHHHhCCCccCccccCCcHHhhcCCCCCCCCCcccccccccHHHHHHHHHHHhCcccEEEE
Confidence 99999876 344688889999887664322 222222222211222 22233555432111
Q ss_pred -----HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCeeEeecCCCCcHHHHHHHhhhhcCCCCHHHHHHHHHHHhhCCC
Q 014906 328 -----QVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKD 402 (416)
Q Consensus 328 -----~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~~v~~~i~G~~s~~~e~l~en~~a~~~~Lt~ee~~~L~~~~~~~~~ 402 (416)
.....+++.+++-.|++..++- +++-.-|.- +|.+- .+-++++-+.-.+--.++++++|-+++.+.-+
T Consensus 413 ~TfgT~~ak~AiRDv~Rvlg~~~~~~d-~iak~ip~~----~~~tl--~~a~~~~~~l~~~~~~~~~~~~l~~~A~~lEG 485 (1107)
T PRK06920 413 VTFGTLAAKAAIRDIARVMGLPPRDID-IFSKLIPSK----LGITL--KDAYEESQSLREFIQGNLLHERVFEIAKRVEG 485 (1107)
T ss_pred eeehhhHHHHHHHHHHHHhCCCHHHHH-HHHhcCCCc----CCCCH--HHHHhhChhhhhhcccCHHHHHHHHHHHHhcC
Confidence 1223578888888888776643 444443321 34322 33333322111111234556677777777666
Q ss_pred CCCcc
Q 014906 403 LLGVI 407 (416)
Q Consensus 403 ~~~~~ 407 (416)
+|...
T Consensus 486 lpR~~ 490 (1107)
T PRK06920 486 LPRHT 490 (1107)
T ss_pred CCCCC
Confidence 66443
No 244
>TIGR00035 asp_race aspartate racemase.
Probab=20.63 E-value=5.1e+02 Score=23.86 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhhcCCCccceEEeccCCCCC----------c-cHHHHHHHHHHHHHcCcccEEEccCCCHHHHH
Q 014906 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN----------P-GYLDALNHLTDLKEEGKIKTVALTNFDTERLR 239 (416)
Q Consensus 174 ~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~----------~-~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~ 239 (416)
+.+..++-++..-.+.+.++++++.+++|+... + ......+.++.|.+.| +..|-+...+...+.
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~ 90 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFA 90 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHH
Confidence 556777777777788999999999999985311 1 1334667777777654 799999988876643
No 245
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=20.58 E-value=1.4e+02 Score=24.48 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEECCCCCC
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA~~YG 135 (416)
+.+.+.+....+++.|++.||.+..|-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 456788999999999999999999983
No 246
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=20.52 E-value=4.4e+02 Score=24.54 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcc------cEEEccCCCHHHHHHHHH-cC-CCe
Q 014906 177 IVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI------KTVALTNFDTERLRIILE-NG-IPV 248 (416)
Q Consensus 177 ~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkI------r~iGvSn~~~~~l~~~~~-~g-~~~ 248 (416)
....-++..-+-..-..++.+++-....... +.|.+...++|.+.|.= .+-|+++. +.+.++.+ .| ..+
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~s-YnEp~tM~kdL~~~GVp~~~i~lDyAGFrTL--DSvvRA~kVF~~~~f 153 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVS-YNEPRTMRKDLIAAGVPAKNIFLDYAGFRTL--DSVVRARKVFGTNDF 153 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCccc-ccchHHHHHHHHHcCCCHHHeeecccCccHH--HHHHHHHHHcCcCcE
Confidence 3444444444445555677777766544444 77777778888888753 34455442 33434333 12 234
Q ss_pred eEecccccccccchhHHHHHHHHHcCCeEEEec
Q 014906 249 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 281 (416)
Q Consensus 249 ~~~Q~~~n~l~~~~~~~ll~~~~~~gi~via~s 281 (416)
..+--+||- +..+=.|+.+||.-+++.
T Consensus 154 tIItQ~FHc------eRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 154 TIITQRFHC------ERALFIARQMGIDAICFA 180 (235)
T ss_pred EEEeccccc------HHHHHHHHHhCCceEEec
Confidence 444434442 245667999999999877
No 247
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=20.52 E-value=4.5e+02 Score=24.87 Aligned_cols=98 Identities=7% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC-----CHHHHHHHHH--cCCCeeEec
Q 014906 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-----DTERLRIILE--NGIPVVSNQ 252 (416)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~-----~~~~l~~~~~--~g~~~~~~Q 252 (416)
..++..|+-+| +|||.+=+-|-.....+-+-+-+.++-+++-|.--+.| ..+ .-..+.++++ ....|+++.
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~IE 89 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAVE 89 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEEE
Q ss_pred ccccccccchhH--HHHHHHHHcCCeEEE
Q 014906 253 VQHSVVDMRPQQ--KMAELCQLTGVKLIT 279 (416)
Q Consensus 253 ~~~n~l~~~~~~--~ll~~~~~~gi~via 279 (416)
+.-..++...++ .+++.++++|..++.
T Consensus 90 iS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 90 ISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EcCCccCCCHHHHHHHHHHHHhCCCeEec
No 248
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=20.48 E-value=1.8e+02 Score=26.15 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=30.2
Q ss_pred ccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCC
Q 014906 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 233 (416)
Q Consensus 193 yiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~ 233 (416)
.-+|++++.... ++...+-++.|.++..+|++|++-+.-|
T Consensus 77 sn~l~lv~~~~r-Np~S~~hvq~l~~l~nqg~Lr~~nLG~~ 116 (173)
T PF10171_consen 77 SNDLLLVSPAIR-NPTSDKHVQRLMRLRNQGRLRYLNLGLF 116 (173)
T ss_pred hCceeccChhhc-CchHHHHHHHHHHHhcCCceEEeeeeeE
Confidence 467777776544 3347788999999999999998765544
No 249
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=20.47 E-value=59 Score=32.97 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=37.1
Q ss_pred CCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHcCCCeeEecccccccccchhHHHHHHH
Q 014906 191 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELC 270 (416)
Q Consensus 191 ~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~g~~~~~~Q~~~n~l~~~~~~~ll~~~ 270 (416)
+-|||+.++|.... -.+++.|++.|. --|+++......++.+|...+... .....+.++|
T Consensus 26 ~~~iD~~l~HdvTs--------P~a~~~lr~~g~------kV~~p~k~~~~~DH~vPt~~~~~a------~~~~~lr~~~ 85 (423)
T COG0065 26 LLYIDLHLVHDVTS--------PQAFEGLREAGR------KVRDPEKTVATFDHNVPTPDIKAA------EQQKELRENA 85 (423)
T ss_pred EEEeeeeeeecccc--------HHHHHHHHHhCC------cccCccceEEEecCCCCCccHHHH------HHHHHHHHHH
Confidence 34899999998642 234466666665 223444444433443332222111 2334788999
Q ss_pred HHcCCeE
Q 014906 271 QLTGVKL 277 (416)
Q Consensus 271 ~~~gi~v 277 (416)
+++||..
T Consensus 86 ke~Gi~~ 92 (423)
T COG0065 86 KEFGIVN 92 (423)
T ss_pred HHhCCee
Confidence 9999544
No 250
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=20.46 E-value=3e+02 Score=22.57 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=25.4
Q ss_pred CHHHHHHHHHcCCCeeEeccccc-ccccchhHHHHHHHHHcCCeEEEeccccCcc
Q 014906 234 DTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITYGTVMGGL 287 (416)
Q Consensus 234 ~~~~l~~~~~~g~~~~~~Q~~~n-~l~~~~~~~ll~~~~~~gi~via~spL~~G~ 287 (416)
+++++..+.+.|++-.+|-=+-+ --+......+-+.|++.|+.++ +-|+.++.
T Consensus 16 ~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~-~iPv~~~~ 69 (110)
T PF04273_consen 16 SPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYV-HIPVDGGA 69 (110)
T ss_dssp -HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEE-E----TTT
T ss_pred CHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEE-EeecCCCC
Confidence 67889998888866444421111 0001111246788999999974 56776654
No 251
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.41 E-value=4.1e+02 Score=26.53 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=76.3
Q ss_pred CccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCC--EEECCCCCCccHHHHHHHHHhhhcCCCcceEEEEEeec
Q 014906 87 DSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLT--TFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLT 164 (416)
Q Consensus 87 tgl~vs~lglGt~~~~~~~~~~~~~~~~~~l~~Al~~Gin--~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~~~i~t 164 (416)
.|..|-.+|+|. +|. =.+..|-..|.+ .||++.. ..| ++++.++.+ .+++ .+
T Consensus 181 pG~~vgI~GlGG--LGh-----------~aVq~AKAMG~rV~vis~~~~--kke----ea~~~LGAd---~fv~----~~ 234 (360)
T KOG0023|consen 181 PGKWVGIVGLGG--LGH-----------MAVQYAKAMGMRVTVISTSSK--KKE----EAIKSLGAD---VFVD----ST 234 (360)
T ss_pred CCcEEEEecCcc--cch-----------HHHHHHHHhCcEEEEEeCCch--hHH----HHHHhcCcc---eeEE----ec
Confidence 566888888887 432 256777777766 6776532 223 346666655 2222 22
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHHHHHHHHHHHHcCcccEEEccCCCHHHHHHHHHc
Q 014906 165 KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 244 (416)
Q Consensus 165 k~~~~~~~~~~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~ 244 (416)
+ +++.+. ++..++.- + +|....- .....-.+++-+|..|++-.+|+-+- +..+.-+-
T Consensus 235 ~--------d~d~~~-~~~~~~dg-~--------~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~~-~~~~~~~~-- 291 (360)
T KOG0023|consen 235 E--------DPDIMK-AIMKTTDG-G--------IDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPEK-PLKLDTFP-- 291 (360)
T ss_pred C--------CHHHHH-HHHHhhcC-c--------ceeeeec--cccchHHHHHHhhcCCEEEEEeCcCC-cccccchh--
Confidence 1 334333 33333321 1 2332200 01112344578899999999999875 32222111
Q ss_pred CCCeeEecccccccc-cchhHHHHHHHHHcCCeEE
Q 014906 245 GIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLI 278 (416)
Q Consensus 245 g~~~~~~Q~~~n~l~-~~~~~~ll~~~~~~gi~vi 278 (416)
.-+-...+-.|.+- +..-++++++|.+++|...
T Consensus 292 -lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~~ 325 (360)
T KOG0023|consen 292 -LILGRKSIKGSIVGSRKETQEALDFVARGLIKSP 325 (360)
T ss_pred -hhcccEEEEeeccccHHHHHHHHHHHHcCCCcCc
Confidence 11333445555542 3444589999999987643
No 252
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=20.40 E-value=8.2e+02 Score=23.96 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEECC---C-----CCC------ccHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCC
Q 014906 109 DRDDAVDAMLRYADAGLTTFDMA---D-----HYG------PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (416)
Q Consensus 109 ~~~~~~~~l~~Al~~Gin~fDTA---~-----~YG------~sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~ 174 (416)
++++..++...+.+.|+..||-= + .|| +.-+++.+.++.....-.+.+-+++|+..-+. +
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~ 146 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------S 146 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------C
Confidence 66777778888889999999932 1 133 23445566666544321102334444432111 1
Q ss_pred HHHHHHHHHHHHhhcCCCccceEEeccCCCCCccHHH---HHHHHHHHHHcCcccEEEccCC-CHHHHHHHHHcCCCeeE
Q 014906 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD---ALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVS 250 (416)
Q Consensus 175 ~~~v~~~le~SL~rLg~dyiDl~~lH~pd~~~~~~~e---~~~aL~~l~~~GkIr~iGvSn~-~~~~l~~~~~~g~~~~~ 250 (416)
.+.. ..+-+.|+..| +|.+-+|.-..... +.. -|+...++++.-.|--||.... +++...++++.+ ..+.
T Consensus 147 ~~~~-~~~a~~l~~~G---vd~i~Vh~Rt~~~~-y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~-g~Dg 220 (312)
T PRK10550 147 GERK-FEIADAVQQAG---ATELVVHGRTKEDG-YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAIT-GCDA 220 (312)
T ss_pred chHH-HHHHHHHHhcC---CCEEEECCCCCccC-CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhcc-CCCE
Confidence 1222 24445567777 56667786432211 111 2677778887777777887765 778888877532 3555
Q ss_pred eccc
Q 014906 251 NQVQ 254 (416)
Q Consensus 251 ~Q~~ 254 (416)
+++-
T Consensus 221 VmiG 224 (312)
T PRK10550 221 VMIG 224 (312)
T ss_pred EEEc
Confidence 5554
No 253
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.07 E-value=8.2e+02 Score=23.84 Aligned_cols=119 Identities=9% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEECCCCCCc---cHHHHHHHHHhhhcCCCcceEEEEEeecccCCCCCCCCHHHHHHHHH
Q 014906 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (416)
Q Consensus 107 ~~~~~~~~~~l~~Al~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~~~i~tk~~~~~~~~~~~~v~~~le 183 (416)
..+.++..++++.+.+.|+..|.-+. |. ..+ +-+.++...... .+ ..+.+.|.-. .+.+ .-
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~-l~~li~~i~~~~--gi-~~v~itTNG~---------ll~~-~~ 105 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKD-LVELVARLAALP--GI-EDIALTTNGL---------LLAR-HA 105 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCC-HHHHHHHHHhcC--CC-CeEEEEeCch---------hHHH-HH
Confidence 35778999999999999998776432 31 111 123333322211 11 0333444310 0111 22
Q ss_pred HHHhhcCCCccceEEeccCCCC--------CccHHHHHHHHHHHHHcCcc--c--EEEccCCCHHHHHHHH
Q 014906 184 VSRRRMDVPCLDMLQFHWWDYS--------NPGYLDALNHLTDLKEEGKI--K--TVALTNFDTERLRIIL 242 (416)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~pd~~--------~~~~~e~~~aL~~l~~~GkI--r--~iGvSn~~~~~l~~~~ 242 (416)
+.|.+.|+++|- +.++..++. ...+++++++++.+++.|.- + .+-+.+.+.+++.+++
T Consensus 106 ~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~ 175 (334)
T TIGR02666 106 KDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLA 175 (334)
T ss_pred HHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHH
Confidence 446666765443 234443221 12377888888888887752 1 1223344555554444
Done!