Query 014910
Match_columns 416
No_of_seqs 182 out of 944
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 03:18:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 5.6E-88 1.9E-92 720.2 42.7 402 10-416 344-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 1.6E-87 5.6E-92 716.5 40.9 399 12-416 357-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 2.9E-85 1E-89 646.7 33.2 356 60-416 4-382 (382)
4 3o2p_E Cell division control p 99.9 8E-28 2.7E-32 183.9 4.6 82 334-416 7-88 (88)
5 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 4.8E-28 1.7E-32 180.8 2.0 75 342-416 3-77 (77)
6 1iuy_A Cullin-3 homologue; win 99.9 9.6E-28 3.3E-32 185.5 -0.4 82 335-416 11-92 (92)
7 2do7_A Cullin-4B, CUL-4B; heli 99.9 6E-27 2E-31 183.5 2.9 81 334-416 15-95 (101)
8 4ap2_B Cullin-3, CUL-3; ubiqui 98.8 2.8E-09 9.6E-14 105.8 6.1 62 10-74 335-396 (410)
9 2wzk_A Cullin-5, CUL-5; UBL co 97.9 7.7E-06 2.6E-10 80.5 5.9 48 10-57 334-381 (391)
10 1wi9_A Protein C20ORF116 homol 92.1 0.092 3.1E-06 37.6 2.7 53 356-416 13-65 (72)
11 3cuo_A Uncharacterized HTH-typ 90.7 0.33 1.1E-05 36.7 5.0 49 251-301 23-71 (99)
12 2jt1_A PEFI protein; solution 90.6 0.27 9.2E-06 36.0 4.1 49 256-306 8-62 (77)
13 1qgp_A Protein (double strande 90.4 0.35 1.2E-05 35.3 4.6 47 254-302 16-65 (77)
14 3lmm_A Uncharacterized protein 90.3 0.13 4.4E-06 52.9 2.9 135 251-409 429-567 (583)
15 2dk5_A DNA-directed RNA polyme 89.9 0.39 1.3E-05 36.4 4.6 52 247-300 15-68 (91)
16 3tgn_A ADC operon repressor AD 89.7 0.45 1.5E-05 38.6 5.4 52 248-302 34-85 (146)
17 3jth_A Transcription activator 89.7 0.75 2.6E-05 34.8 6.3 49 251-302 22-70 (98)
18 3g3z_A NMB1585, transcriptiona 89.5 0.4 1.4E-05 39.0 4.8 51 250-302 29-79 (145)
19 2fu4_A Ferric uptake regulatio 89.4 0.41 1.4E-05 35.1 4.4 51 249-301 14-71 (83)
20 3hsr_A HTH-type transcriptiona 89.3 0.33 1.1E-05 39.4 4.1 52 249-302 33-84 (140)
21 1sfx_A Conserved hypothetical 89.1 0.36 1.2E-05 36.9 4.1 50 250-301 18-67 (109)
22 2htj_A P fimbrial regulatory p 89.0 0.95 3.2E-05 33.0 6.1 59 256-318 4-62 (81)
23 3ech_A MEXR, multidrug resista 88.9 0.32 1.1E-05 39.5 3.8 52 249-302 34-85 (142)
24 1y0u_A Arsenical resistance op 88.8 0.8 2.7E-05 34.6 5.8 56 251-318 30-85 (96)
25 3nrv_A Putative transcriptiona 88.3 0.52 1.8E-05 38.4 4.8 52 249-302 37-88 (148)
26 1qbj_A Protein (double-strande 88.3 0.81 2.8E-05 33.8 5.3 58 254-318 12-72 (81)
27 3cdh_A Transcriptional regulat 88.2 0.72 2.5E-05 37.9 5.6 50 250-301 41-90 (155)
28 4hbl_A Transcriptional regulat 88.0 0.43 1.5E-05 39.2 4.1 51 250-302 39-89 (149)
29 2frh_A SARA, staphylococcal ac 87.8 0.42 1.4E-05 38.3 3.7 52 249-302 34-87 (127)
30 3r0a_A Putative transcriptiona 87.7 0.51 1.7E-05 37.7 4.2 51 249-301 23-75 (123)
31 3oop_A LIN2960 protein; protei 87.6 0.37 1.3E-05 39.2 3.4 51 250-302 35-85 (143)
32 1xn7_A Hypothetical protein YH 87.6 0.55 1.9E-05 34.4 3.9 43 257-301 7-49 (78)
33 2fbh_A Transcriptional regulat 87.5 0.65 2.2E-05 37.6 4.8 50 250-301 35-85 (146)
34 3k0l_A Repressor protein; heli 87.4 0.52 1.8E-05 39.3 4.3 51 250-302 44-94 (162)
35 2gxg_A 146AA long hypothetical 87.3 0.83 2.8E-05 37.0 5.4 49 250-301 35-83 (146)
36 2qww_A Transcriptional regulat 87.2 0.64 2.2E-05 38.1 4.7 49 250-300 39-87 (154)
37 3eco_A MEPR; mutlidrug efflux 87.2 0.55 1.9E-05 37.8 4.2 51 250-302 29-81 (139)
38 3bpv_A Transcriptional regulat 87.0 0.51 1.7E-05 37.9 3.9 50 250-301 27-76 (138)
39 1oyi_A Double-stranded RNA-bin 86.9 0.92 3.2E-05 33.5 4.8 44 255-301 20-63 (82)
40 2k02_A Ferrous iron transport 86.8 0.61 2.1E-05 35.0 3.8 43 257-301 7-49 (87)
41 3bro_A Transcriptional regulat 86.5 0.78 2.7E-05 36.9 4.8 50 250-301 32-83 (141)
42 2d1h_A ST1889, 109AA long hypo 86.5 0.92 3.1E-05 34.6 5.0 50 250-301 19-69 (109)
43 3bj6_A Transcriptional regulat 86.4 0.75 2.6E-05 37.6 4.7 50 250-301 38-87 (152)
44 2fa5_A Transcriptional regulat 86.3 0.79 2.7E-05 37.9 4.8 51 249-301 46-96 (162)
45 3pqk_A Biofilm growth-associat 86.3 1.8 6.1E-05 32.9 6.5 61 251-318 22-82 (102)
46 1jgs_A Multiple antibiotic res 86.3 0.62 2.1E-05 37.4 4.0 50 250-301 32-81 (138)
47 1u2w_A CADC repressor, cadmium 86.1 1.2 4.3E-05 35.3 5.7 49 251-301 41-89 (122)
48 3e6m_A MARR family transcripti 86.1 0.55 1.9E-05 39.1 3.7 51 250-302 51-101 (161)
49 3bja_A Transcriptional regulat 85.8 0.49 1.7E-05 37.9 3.2 50 250-301 31-80 (139)
50 1xmk_A Double-stranded RNA-spe 85.7 1.1 3.8E-05 32.8 4.7 49 252-302 11-60 (79)
51 1tbx_A ORF F-93, hypothetical 85.5 0.9 3.1E-05 34.4 4.4 51 249-301 5-59 (99)
52 3deu_A Transcriptional regulat 85.3 0.79 2.7E-05 38.4 4.3 51 250-302 51-102 (166)
53 2pex_A Transcriptional regulat 85.2 0.79 2.7E-05 37.6 4.2 50 250-301 45-94 (153)
54 3bdd_A Regulatory protein MARR 85.1 0.77 2.6E-05 36.9 4.1 51 249-301 28-78 (142)
55 2nnn_A Probable transcriptiona 85.1 0.61 2.1E-05 37.4 3.4 51 249-301 35-85 (140)
56 2nyx_A Probable transcriptiona 84.8 0.66 2.3E-05 38.9 3.6 51 249-301 42-92 (168)
57 1lj9_A Transcriptional regulat 84.8 0.69 2.4E-05 37.4 3.6 50 250-301 27-76 (144)
58 2hr3_A Probable transcriptiona 84.7 0.87 3E-05 36.9 4.2 51 249-301 32-83 (147)
59 3s2w_A Transcriptional regulat 84.7 0.54 1.9E-05 39.0 3.0 50 250-301 48-97 (159)
60 3cjn_A Transcriptional regulat 84.6 0.83 2.8E-05 37.8 4.1 50 250-301 50-99 (162)
61 1sfu_A 34L protein; protein/Z- 84.3 1.9 6.6E-05 31.1 5.3 43 258-302 21-63 (75)
62 2bv6_A MGRA, HTH-type transcri 84.3 0.61 2.1E-05 37.7 3.1 50 250-301 35-84 (142)
63 1bja_A Transcription regulator 84.3 1.1 3.9E-05 34.0 4.3 50 248-299 12-62 (95)
64 2rdp_A Putative transcriptiona 84.2 0.85 2.9E-05 37.1 3.9 50 250-301 40-89 (150)
65 2a61_A Transcriptional regulat 84.1 0.67 2.3E-05 37.5 3.3 50 250-301 31-80 (145)
66 2eth_A Transcriptional regulat 84.1 0.91 3.1E-05 37.3 4.1 50 250-301 42-91 (154)
67 2e1c_A Putative HTH-type trans 84.1 0.96 3.3E-05 38.4 4.3 66 230-300 8-73 (171)
68 1p6r_A Penicillinase repressor 84.0 0.93 3.2E-05 33.1 3.7 52 249-302 6-61 (82)
69 1z91_A Organic hydroperoxide r 83.7 0.82 2.8E-05 37.1 3.6 51 250-302 38-88 (147)
70 1s3j_A YUSO protein; structura 83.7 0.71 2.4E-05 37.9 3.3 51 249-301 34-84 (155)
71 1xn7_A Hypothetical protein YH 83.6 0.71 2.4E-05 33.8 2.8 43 355-405 7-49 (78)
72 1ku9_A Hypothetical protein MJ 83.6 1.5 5.1E-05 35.4 5.2 50 250-301 24-74 (152)
73 3fm5_A Transcriptional regulat 83.5 1.1 3.7E-05 36.6 4.3 51 250-302 37-88 (150)
74 3jw4_A Transcriptional regulat 83.5 0.51 1.7E-05 38.6 2.3 51 250-302 39-91 (148)
75 2fbi_A Probable transcriptiona 83.3 0.67 2.3E-05 37.3 2.9 50 250-301 34-83 (142)
76 2l02_A Uncharacterized protein 83.1 3 0.0001 30.6 5.9 37 256-292 12-48 (82)
77 3f3x_A Transcriptional regulat 82.9 0.81 2.8E-05 37.1 3.3 50 249-301 34-83 (144)
78 4b8x_A SCO5413, possible MARR- 82.8 0.91 3.1E-05 37.3 3.5 51 250-302 33-85 (147)
79 4aik_A Transcriptional regulat 82.1 2 6.7E-05 35.4 5.4 51 250-302 29-80 (151)
80 3kp7_A Transcriptional regulat 82.0 0.86 3E-05 37.3 3.1 49 249-300 35-83 (151)
81 1ub9_A Hypothetical protein PH 81.9 1.1 3.7E-05 33.7 3.5 48 251-300 15-62 (100)
82 2v79_A DNA replication protein 81.9 1.3 4.5E-05 36.1 4.1 51 248-300 28-83 (135)
83 3nqo_A MARR-family transcripti 81.8 1.1 3.8E-05 38.4 3.9 51 250-302 39-91 (189)
84 3boq_A Transcriptional regulat 81.7 0.9 3.1E-05 37.5 3.2 51 249-301 44-95 (160)
85 2oqg_A Possible transcriptiona 81.7 1.1 3.9E-05 34.6 3.6 48 251-301 20-67 (114)
86 1r1u_A CZRA, repressor protein 81.5 1.5 5E-05 33.8 4.1 48 251-301 25-72 (106)
87 3lwf_A LIN1550 protein, putati 81.3 3.8 0.00013 34.3 6.9 59 253-318 30-89 (159)
88 1p6r_A Penicillinase repressor 81.2 0.65 2.2E-05 34.0 1.9 57 354-415 13-69 (82)
89 2fxa_A Protease production reg 81.2 1.1 3.6E-05 39.3 3.6 51 250-302 46-96 (207)
90 2k4b_A Transcriptional regulat 81.1 1.1 3.8E-05 34.4 3.2 61 351-416 36-96 (99)
91 3t8r_A Staphylococcus aureus C 80.8 3.9 0.00013 33.5 6.7 57 255-318 16-73 (143)
92 2k02_A Ferrous iron transport 80.2 0.8 2.8E-05 34.3 2.0 44 355-406 7-50 (87)
93 3k69_A Putative transcription 79.9 2.2 7.6E-05 35.8 5.0 46 253-300 15-60 (162)
94 2pn6_A ST1022, 150AA long hypo 79.8 2.4 8.1E-05 34.7 5.1 48 251-300 2-49 (150)
95 2heo_A Z-DNA binding protein 1 79.7 1.1 3.9E-05 31.5 2.6 45 253-299 11-56 (67)
96 2w25_A Probable transcriptiona 79.2 2.2 7.5E-05 35.0 4.7 49 250-300 5-53 (150)
97 2vn2_A DNAD, chromosome replic 79.0 2.3 7.9E-05 34.1 4.7 53 248-302 28-85 (128)
98 2kko_A Possible transcriptiona 78.7 1.2 4.2E-05 34.5 2.8 46 253-301 26-71 (108)
99 2wte_A CSA3; antiviral protein 77.9 1.8 6.1E-05 39.1 4.0 51 249-301 149-199 (244)
100 2obp_A Putative DNA-binding pr 77.9 2.3 7.9E-05 32.4 4.0 50 249-300 13-68 (96)
101 2y75_A HTH-type transcriptiona 77.3 5.8 0.0002 31.5 6.6 48 264-318 24-71 (129)
102 2cfx_A HTH-type transcriptiona 76.8 2.9 9.9E-05 34.0 4.8 49 250-300 3-51 (144)
103 2v79_A DNA replication protein 76.7 2.2 7.4E-05 34.8 3.8 27 378-404 57-83 (135)
104 2xub_A DNA-directed RNA polyme 76.7 2.1 7.2E-05 43.3 4.6 136 256-407 23-162 (534)
105 1ylf_A RRF2 family protein; st 76.6 4.2 0.00014 33.4 5.7 57 254-318 18-74 (149)
106 2ia0_A Putative HTH-type trans 76.4 2.7 9.2E-05 35.6 4.5 51 247-299 12-62 (171)
107 3u2r_A Regulatory protein MARR 76.1 1.3 4.3E-05 37.1 2.4 50 250-301 44-95 (168)
108 1sd4_A Penicillinase repressor 75.9 1.8 6E-05 34.2 3.1 51 249-301 7-61 (126)
109 3r4k_A Transcriptional regulat 75.7 2.6 8.7E-05 38.3 4.5 55 256-318 10-65 (260)
110 1i1g_A Transcriptional regulat 75.5 2.4 8.1E-05 34.3 3.8 48 251-300 3-50 (141)
111 2xrn_A HTH-type transcriptiona 75.3 3.8 0.00013 36.7 5.5 55 256-318 10-65 (241)
112 2dbb_A Putative HTH-type trans 74.9 3.3 0.00011 33.9 4.6 48 250-299 7-54 (151)
113 2cg4_A Regulatory protein ASNC 74.9 3.2 0.00011 34.1 4.5 48 250-299 6-53 (152)
114 2lkp_A Transcriptional regulat 74.9 2.8 9.6E-05 32.7 4.0 47 251-300 31-77 (119)
115 2p5k_A Arginine repressor; DNA 74.8 4.1 0.00014 27.7 4.5 37 254-290 7-48 (64)
116 2g9w_A Conserved hypothetical 74.5 3.6 0.00012 33.2 4.7 50 250-301 7-61 (138)
117 1bby_A RAP30; average structur 74.5 6.5 0.00022 27.8 5.3 57 254-320 10-66 (69)
118 2jsc_A Transcriptional regulat 74.1 3.4 0.00012 32.4 4.4 49 250-301 19-67 (118)
119 4fx0_A Probable transcriptiona 73.9 3.8 0.00013 33.5 4.8 48 250-299 31-83 (148)
120 2cyy_A Putative HTH-type trans 72.9 3.5 0.00012 33.8 4.3 49 250-300 5-53 (151)
121 2p5v_A Transcriptional regulat 72.7 4.1 0.00014 33.8 4.7 49 250-300 8-56 (162)
122 1hsj_A Fusion protein consisti 72.5 2.8 9.6E-05 41.5 4.3 53 248-302 400-454 (487)
123 1fse_A GERE; helix-turn-helix 72.5 6.2 0.00021 27.5 5.1 41 249-291 11-51 (74)
124 1p4x_A Staphylococcal accessor 72.4 3.5 0.00012 37.3 4.5 52 249-302 155-208 (250)
125 1r1t_A Transcriptional repress 72.3 4.8 0.00016 31.8 4.8 48 251-301 45-92 (122)
126 1okr_A MECI, methicillin resis 71.9 2.2 7.7E-05 33.4 2.8 51 249-301 7-61 (123)
127 3mq0_A Transcriptional repress 71.7 3.2 0.00011 38.0 4.2 44 256-301 34-78 (275)
128 1xd7_A YWNA; structural genomi 71.6 7.4 0.00025 31.7 6.0 55 254-318 13-67 (145)
129 2fu4_A Ferric uptake regulatio 71.3 3 0.0001 30.3 3.1 58 354-414 21-80 (83)
130 3f6o_A Probable transcriptiona 70.9 3.8 0.00013 32.1 3.9 48 251-301 17-64 (118)
131 3ulq_B Transcriptional regulat 70.7 6.1 0.00021 29.4 4.8 42 248-291 28-69 (90)
132 1p4x_A Staphylococcal accessor 70.0 2.8 9.7E-05 37.9 3.3 52 249-302 31-84 (250)
133 1je8_A Nitrate/nitrite respons 70.0 7 0.00024 28.4 4.9 41 249-291 21-61 (82)
134 1tbx_A ORF F-93, hypothetical 69.8 2.5 8.4E-05 31.8 2.5 52 355-410 13-64 (99)
135 1sd4_A Penicillinase repressor 69.7 1.5 5.1E-05 34.7 1.2 58 353-415 13-70 (126)
136 1mkm_A ICLR transcriptional re 68.7 7.2 0.00024 34.9 5.7 54 255-317 11-65 (249)
137 2k4b_A Transcriptional regulat 68.4 1.1 3.9E-05 34.3 0.2 52 249-302 32-87 (99)
138 2pg4_A Uncharacterized protein 68.0 4.3 0.00015 30.3 3.5 45 253-299 16-62 (95)
139 2yu3_A DNA-directed RNA polyme 67.0 6.3 0.00022 29.8 4.2 50 249-300 34-85 (95)
140 2hzt_A Putative HTH-type trans 65.7 7.1 0.00024 29.9 4.4 47 252-301 14-61 (107)
141 3i4p_A Transcriptional regulat 65.7 8.2 0.00028 32.0 5.1 45 253-299 4-48 (162)
142 1x3u_A Transcriptional regulat 65.3 9.6 0.00033 27.0 4.8 40 250-291 17-56 (79)
143 2fbk_A Transcriptional regulat 65.2 2.2 7.7E-05 36.0 1.5 50 250-301 67-119 (181)
144 1z7u_A Hypothetical protein EF 65.0 5.3 0.00018 30.9 3.6 48 251-301 21-69 (112)
145 3f6v_A Possible transcriptiona 64.7 5.3 0.00018 33.0 3.7 48 251-301 57-104 (151)
146 3c57_A Two component transcrip 64.4 8.1 0.00028 28.9 4.4 41 249-291 27-67 (95)
147 2l01_A Uncharacterized protein 63.9 9.6 0.00033 27.5 4.3 37 256-292 14-51 (77)
148 2zkz_A Transcriptional repress 63.4 6.1 0.00021 29.8 3.6 47 251-300 26-72 (99)
149 3df8_A Possible HXLR family tr 63.3 9.8 0.00033 29.4 4.8 49 250-301 25-76 (111)
150 3b73_A PHIH1 repressor-like pr 62.8 7.4 0.00025 30.4 4.0 50 250-301 11-62 (111)
151 3r0a_A Putative transcriptiona 62.6 3.6 0.00012 32.6 2.2 58 350-415 26-89 (123)
152 1qbj_A Protein (double-strande 62.0 3.7 0.00013 30.1 2.0 51 354-412 14-67 (81)
153 2vn2_A DNAD, chromosome replic 61.9 4.7 0.00016 32.2 2.8 26 381-406 60-85 (128)
154 2o0y_A Transcriptional regulat 61.7 7.2 0.00025 35.2 4.4 44 256-301 27-71 (260)
155 2ia2_A Putative transcriptiona 61.5 9.1 0.00031 34.6 5.0 53 256-318 25-78 (265)
156 1q1h_A TFE, transcription fact 61.2 7.9 0.00027 29.6 3.9 44 256-301 22-66 (110)
157 3f8b_A Transcriptional regulat 61.2 10 0.00034 29.6 4.6 58 347-405 9-66 (116)
158 2qvo_A Uncharacterized protein 60.8 5 0.00017 29.9 2.6 47 250-298 10-60 (95)
159 1oks_A RNA polymerase alpha su 60.4 13 0.00044 24.5 4.0 44 114-157 5-48 (56)
160 2x4h_A Hypothetical protein SS 59.5 11 0.00037 30.0 4.7 50 249-300 10-63 (139)
161 1okr_A MECI, methicillin resis 59.5 3 0.0001 32.6 1.2 56 355-415 15-70 (123)
162 2g7u_A Transcriptional regulat 59.2 11 0.00037 33.9 5.1 54 255-318 17-71 (257)
163 2htj_A P fimbrial regulatory p 59.0 8.5 0.00029 27.7 3.6 43 355-405 5-47 (81)
164 1uly_A Hypothetical protein PH 58.9 13 0.00046 31.8 5.4 49 250-301 18-66 (192)
165 1on2_A Transcriptional regulat 58.5 7.1 0.00024 31.3 3.4 40 260-301 16-55 (142)
166 4a0z_A Transcription factor FA 58.4 10 0.00034 32.7 4.4 39 253-291 13-51 (190)
167 1yyv_A Putative transcriptiona 57.8 10 0.00036 30.3 4.2 48 251-301 34-82 (131)
168 2p7v_B Sigma-70, RNA polymeras 56.8 20 0.00067 24.6 5.1 41 250-290 6-49 (68)
169 2x48_A CAG38821; archeal virus 56.5 30 0.001 22.4 5.8 24 265-288 30-53 (55)
170 1tc3_C Protein (TC3 transposas 56.1 19 0.00065 22.2 4.6 34 255-290 12-45 (51)
171 2p4w_A Transcriptional regulat 55.8 13 0.00045 32.2 4.8 48 251-301 14-61 (202)
172 1nkl_A NK-lysin; saposin fold, 55.8 36 0.0012 24.3 6.5 58 63-124 7-65 (78)
173 1qgp_A Protein (double strande 55.5 6.7 0.00023 28.3 2.4 50 355-412 19-71 (77)
174 2rnj_A Response regulator prot 55.4 8.6 0.00029 28.4 3.1 40 250-291 30-69 (91)
175 4a5n_A Uncharacterized HTH-typ 54.9 15 0.00052 29.4 4.7 48 251-301 25-73 (131)
176 2jpc_A SSRB; DNA binding prote 54.9 12 0.00041 24.9 3.6 35 255-291 4-38 (61)
177 2f2e_A PA1607; transcription f 54.4 22 0.00074 28.9 5.7 49 251-302 23-71 (146)
178 2g9w_A Conserved hypothetical 53.2 12 0.00042 29.9 3.9 59 352-415 11-70 (138)
179 2lnb_A Z-DNA-binding protein 1 52.8 9.4 0.00032 27.6 2.7 37 255-291 22-59 (80)
180 2fsw_A PG_0823 protein; alpha- 52.1 12 0.00042 28.4 3.6 46 253-301 26-72 (107)
181 1tty_A Sigma-A, RNA polymerase 51.2 22 0.00075 25.9 4.8 40 251-290 20-62 (87)
182 2jt1_A PEFI protein; solution 50.5 7.7 0.00026 28.1 2.0 39 363-409 23-61 (77)
183 1ku3_A Sigma factor SIGA; heli 50.3 24 0.00081 24.6 4.7 39 251-289 12-53 (73)
184 1p4w_A RCSB; solution structur 49.7 19 0.00065 27.2 4.3 41 249-291 34-74 (99)
185 2fe3_A Peroxide operon regulat 49.5 30 0.001 28.0 5.8 65 248-317 18-88 (145)
186 2qlz_A Transcription factor PF 49.1 15 0.00053 32.6 4.2 46 253-301 166-211 (232)
187 2dk5_A DNA-directed RNA polyme 47.3 15 0.00051 27.4 3.2 35 362-404 34-68 (91)
188 3cuo_A Uncharacterized HTH-typ 47.2 12 0.00041 27.6 2.8 52 352-411 26-77 (99)
189 2frh_A SARA, staphylococcal ac 47.1 11 0.00036 29.7 2.6 28 382-409 63-92 (127)
190 3t72_q RNA polymerase sigma fa 46.7 26 0.00089 26.5 4.6 39 250-288 20-61 (99)
191 1xma_A Predicted transcription 46.0 13 0.00045 30.3 3.0 57 349-406 40-96 (145)
192 3hug_A RNA polymerase sigma fa 45.3 29 0.001 25.4 4.7 39 250-290 38-77 (92)
193 2o8x_A Probable RNA polymerase 45.3 33 0.0011 23.2 4.8 39 250-290 16-55 (70)
194 3i4p_A Transcriptional regulat 45.0 11 0.00037 31.3 2.4 47 351-405 4-50 (162)
195 1mzb_A Ferric uptake regulatio 44.4 25 0.00087 28.0 4.5 64 248-316 14-84 (136)
196 3to7_A Histone acetyltransfera 43.7 20 0.00068 32.5 4.0 38 253-290 194-232 (276)
197 2ozu_A Histone acetyltransfera 43.0 23 0.00078 32.2 4.3 38 253-290 199-238 (284)
198 3cuq_B Vacuolar protein-sortin 42.4 76 0.0026 27.7 7.6 50 250-301 152-201 (218)
199 2ou2_A Histone acetyltransfera 42.3 23 0.00077 32.3 4.1 25 266-290 212-236 (280)
200 1l9l_A Granulysin; saposin fol 41.9 40 0.0014 24.0 4.7 57 63-124 7-65 (74)
201 1bia_A BIRA bifunctional prote 41.3 28 0.00097 32.4 4.9 40 253-292 6-45 (321)
202 1v4r_A Transcriptional repress 39.7 16 0.00055 27.5 2.5 40 260-301 28-68 (102)
203 1r7j_A Conserved hypothetical 39.5 42 0.0014 25.0 4.8 44 254-301 10-53 (95)
204 1j5y_A Transcriptional regulat 39.2 30 0.001 29.2 4.4 40 253-292 22-62 (187)
205 2xig_A Ferric uptake regulatio 39.0 34 0.0012 27.8 4.5 52 248-301 23-80 (150)
206 3kp7_A Transcriptional regulat 38.4 8.9 0.0003 30.9 0.8 51 352-411 40-94 (151)
207 3k2z_A LEXA repressor; winged 38.3 36 0.0012 28.9 4.8 50 250-301 3-57 (196)
208 3cdh_A Transcriptional regulat 38.2 16 0.00054 29.4 2.4 48 351-406 44-91 (155)
209 2o03_A Probable zinc uptake re 37.9 36 0.0012 26.9 4.4 51 249-301 8-64 (131)
210 1sfx_A Conserved hypothetical 37.8 15 0.0005 27.4 2.0 47 352-406 22-68 (109)
211 2pg4_A Uncharacterized protein 37.6 7.7 0.00026 28.8 0.3 47 358-412 23-71 (95)
212 3hrs_A Metalloregulator SCAR; 37.6 34 0.0012 29.7 4.6 43 257-301 11-53 (214)
213 2hzt_A Putative HTH-type trans 37.4 40 0.0014 25.4 4.5 52 355-414 19-72 (107)
214 1z6r_A MLC protein; transcript 36.8 52 0.0018 31.4 6.2 64 255-320 19-85 (406)
215 2w57_A Ferric uptake regulatio 36.3 30 0.001 28.2 3.7 52 248-301 13-71 (150)
216 3bja_A Transcriptional regulat 36.2 22 0.00076 27.7 2.9 43 355-405 38-80 (139)
217 3tgn_A ADC operon repressor AD 35.9 13 0.00044 29.6 1.4 43 355-406 43-85 (146)
218 2qww_A Transcriptional regulat 35.9 19 0.00066 28.8 2.5 45 352-404 43-87 (154)
219 3mwm_A ZUR, putative metal upt 35.8 28 0.00096 28.0 3.5 57 355-414 19-76 (139)
220 2qvo_A Uncharacterized protein 35.8 16 0.00056 27.0 1.9 29 381-410 39-67 (95)
221 2fbh_A Transcriptional regulat 35.2 27 0.00092 27.5 3.3 47 352-406 39-86 (146)
222 2h09_A Transcriptional regulat 35.1 35 0.0012 27.5 4.0 40 260-301 48-87 (155)
223 3mzy_A RNA polymerase sigma-H 35.0 38 0.0013 27.1 4.3 39 250-290 110-148 (164)
224 1i1g_A Transcriptional regulat 34.7 16 0.00053 29.2 1.7 47 352-406 6-52 (141)
225 2qlz_A Transcription factor PF 34.0 20 0.00067 31.9 2.4 47 251-300 11-57 (232)
226 3jth_A Transcription activator 33.8 30 0.001 25.5 3.1 50 354-412 27-76 (98)
227 2xub_A DNA-directed RNA polyme 33.7 51 0.0017 33.1 5.7 117 266-405 287-407 (534)
228 1jko_C HIN recombinase, DNA-in 33.5 46 0.0016 20.6 3.7 31 257-289 14-44 (52)
229 3bro_A Transcriptional regulat 33.4 26 0.00088 27.5 2.9 46 353-406 37-84 (141)
230 1ku9_A Hypothetical protein MJ 33.4 22 0.00074 28.2 2.4 42 362-411 39-82 (152)
231 2dbb_A Putative HTH-type trans 32.7 22 0.00074 28.8 2.3 45 353-405 12-56 (151)
232 3bpv_A Transcriptional regulat 32.6 18 0.00063 28.2 1.8 47 352-406 31-77 (138)
233 3eyy_A Putative iron uptake re 32.5 16 0.00054 29.7 1.4 56 356-414 25-80 (145)
234 2b0l_A GTP-sensing transcripti 32.4 27 0.00092 26.5 2.6 44 256-301 32-76 (102)
235 2pq8_A Probable histone acetyl 32.3 26 0.00089 31.8 2.9 38 253-290 194-232 (278)
236 2eth_A Transcriptional regulat 32.3 33 0.0011 27.4 3.4 46 352-405 46-91 (154)
237 3f2g_A Alkylmercury lyase; MER 32.2 58 0.002 28.6 5.0 38 254-291 24-61 (220)
238 3dp7_A SAM-dependent methyltra 32.0 52 0.0018 30.8 5.2 40 259-300 42-82 (363)
239 1mzb_A Ferric uptake regulatio 31.9 42 0.0014 26.7 3.9 51 354-407 22-74 (136)
240 1x19_A CRTF-related protein; m 31.7 60 0.002 30.2 5.6 43 265-317 63-105 (359)
241 2pn6_A ST1022, 150AA long hypo 31.4 24 0.00081 28.5 2.4 46 352-405 5-50 (150)
242 2l0k_A Stage III sporulation p 31.4 37 0.0013 25.4 3.2 34 255-289 10-43 (93)
243 2nyx_A Probable transcriptiona 31.4 27 0.00093 28.6 2.8 45 353-405 48-92 (168)
244 1xsv_A Hypothetical UPF0122 pr 31.3 68 0.0023 24.6 4.9 40 250-290 26-65 (113)
245 1ufm_A COP9 complex subunit 4; 31.1 71 0.0024 23.3 4.7 39 254-292 18-56 (84)
246 3clo_A Transcriptional regulat 30.9 42 0.0014 29.9 4.1 41 249-291 197-237 (258)
247 2ip2_A Probable phenazine-spec 30.5 66 0.0022 29.5 5.6 43 265-316 40-82 (334)
248 3rkx_A Biotin-[acetyl-COA-carb 30.4 96 0.0033 28.8 6.7 39 254-292 5-45 (323)
249 2gxg_A 146AA long hypothetical 30.2 40 0.0014 26.4 3.6 46 352-406 39-84 (146)
250 1yg2_A Gene activator APHA; vi 30.2 26 0.00088 29.5 2.4 55 351-406 3-57 (179)
251 2cfx_A HTH-type transcriptiona 30.1 20 0.00069 28.8 1.7 44 354-405 9-52 (144)
252 2fa5_A Transcriptional regulat 30.0 15 0.00052 29.8 0.9 47 352-406 51-97 (162)
253 1oyi_A Double-stranded RNA-bin 29.6 34 0.0012 25.0 2.6 47 355-410 22-68 (82)
254 1jgs_A Multiple antibiotic res 29.6 32 0.0011 26.8 2.8 43 355-405 39-81 (138)
255 2r3s_A Uncharacterized protein 29.5 53 0.0018 30.1 4.7 42 265-316 38-79 (335)
256 1ldd_A APC2WHB, anaphase promo 29.5 34 0.0012 24.5 2.5 63 348-413 6-72 (74)
257 1tw3_A COMT, carminomycin 4-O- 29.2 51 0.0017 30.7 4.6 34 265-300 51-84 (360)
258 3eyy_A Putative iron uptake re 29.1 40 0.0014 27.3 3.3 52 248-301 15-71 (145)
259 1lj9_A Transcriptional regulat 28.9 34 0.0012 26.9 2.9 45 354-406 33-77 (144)
260 3cjn_A Transcriptional regulat 28.9 30 0.001 27.9 2.6 47 352-406 54-100 (162)
261 3k0l_A Repressor protein; heli 28.7 18 0.00061 29.5 1.1 48 351-406 47-94 (162)
262 2p5v_A Transcriptional regulat 28.6 21 0.00073 29.3 1.6 44 354-405 14-57 (162)
263 1s7o_A Hypothetical UPF0122 pr 28.5 64 0.0022 24.8 4.3 39 250-290 23-62 (113)
264 2nnn_A Probable transcriptiona 28.4 24 0.00084 27.5 1.9 26 381-406 61-86 (140)
265 3szt_A QCSR, quorum-sensing co 28.4 50 0.0017 29.0 4.1 41 249-291 175-215 (237)
266 3tqn_A Transcriptional regulat 28.3 25 0.00084 27.1 1.8 27 381-407 42-68 (113)
267 3neu_A LIN1836 protein; struct 28.2 25 0.00084 27.7 1.8 31 381-412 46-76 (125)
268 1t6s_A Conserved hypothetical 28.0 60 0.002 27.0 4.2 33 259-291 15-49 (162)
269 3i53_A O-methyltransferase; CO 27.9 88 0.003 28.7 6.0 35 265-301 37-71 (332)
270 3oop_A LIN2960 protein; protei 27.8 31 0.0011 27.1 2.5 43 356-406 43-85 (143)
271 2xvc_A ESCRT-III, SSO0910; cel 27.8 52 0.0018 22.2 3.0 32 261-292 20-51 (59)
272 2cg4_A Regulatory protein ASNC 27.8 23 0.00078 28.7 1.6 45 352-404 10-54 (152)
273 1q1h_A TFE, transcription fact 27.7 45 0.0015 25.1 3.2 44 354-405 22-66 (110)
274 2e1c_A Putative HTH-type trans 27.5 24 0.00082 29.5 1.7 46 352-405 29-74 (171)
275 2bv6_A MGRA, HTH-type transcri 27.3 33 0.0011 26.9 2.5 47 352-406 39-85 (142)
276 1l3l_A Transcriptional activat 27.2 75 0.0026 27.6 5.1 41 249-291 173-213 (234)
277 3iuo_A ATP-dependent DNA helic 27.2 93 0.0032 24.3 5.1 37 253-291 21-57 (122)
278 3hsr_A HTH-type transcriptiona 27.1 23 0.00079 28.0 1.5 47 352-406 38-84 (140)
279 2w48_A Sorbitol operon regulat 27.1 60 0.0021 29.9 4.6 43 255-299 10-52 (315)
280 2ia0_A Putative HTH-type trans 27.0 24 0.00081 29.5 1.6 46 352-405 19-64 (171)
281 4esf_A PADR-like transcription 26.9 64 0.0022 24.9 4.1 57 346-405 7-63 (117)
282 3edp_A LIN2111 protein; APC883 26.7 32 0.0011 30.3 2.5 31 381-412 42-72 (236)
283 2lfw_A PHYR sigma-like domain; 26.5 54 0.0019 26.5 3.8 39 250-289 94-132 (157)
284 1z91_A Organic hydroperoxide r 26.4 46 0.0016 26.1 3.3 26 381-406 63-88 (147)
285 2rdp_A Putative transcriptiona 26.3 35 0.0012 27.0 2.5 42 357-406 49-90 (150)
286 3bj6_A Transcriptional regulat 26.2 36 0.0012 27.0 2.5 47 352-406 42-88 (152)
287 2k9l_A RNA polymerase sigma fa 26.2 91 0.0031 22.1 4.4 36 255-290 35-72 (76)
288 3mn2_A Probable ARAC family tr 26.1 1E+02 0.0036 22.8 5.2 28 264-291 16-43 (108)
289 4esb_A Transcriptional regulat 25.9 32 0.0011 26.7 2.1 55 348-405 7-61 (115)
290 2o0m_A Transcriptional regulat 25.7 15 0.0005 34.7 0.0 50 248-299 16-65 (345)
291 2cyy_A Putative HTH-type trans 25.6 28 0.00095 28.2 1.7 44 354-405 11-54 (151)
292 2w25_A Probable transcriptiona 25.6 26 0.0009 28.2 1.6 46 352-405 9-54 (150)
293 1qzz_A RDMB, aclacinomycin-10- 25.5 69 0.0024 29.9 4.8 34 265-300 48-81 (374)
294 3hhh_A Transcriptional regulat 25.4 37 0.0013 26.4 2.3 57 346-405 9-65 (116)
295 1of9_A Pore-forming peptide am 25.4 75 0.0026 22.5 3.9 57 63-124 8-66 (77)
296 2ek5_A Predicted transcription 25.3 38 0.0013 26.8 2.5 31 381-412 37-67 (129)
297 1uxc_A FRUR (1-57), fructose r 25.3 57 0.002 22.4 3.1 22 267-288 1-22 (65)
298 3k2z_A LEXA repressor; winged 25.2 30 0.001 29.4 2.0 55 348-410 7-62 (196)
299 3eco_A MEPR; mutlidrug efflux 25.0 27 0.00094 27.3 1.6 47 352-406 33-81 (139)
300 1z7u_A Hypothetical protein EF 25.0 55 0.0019 24.9 3.3 52 355-414 27-80 (112)
301 3e6m_A MARR family transcripti 25.0 38 0.0013 27.4 2.5 46 353-406 56-101 (161)
302 3nqo_A MARR-family transcripti 25.0 40 0.0014 28.3 2.8 37 362-406 55-91 (189)
303 2b0l_A GTP-sensing transcripti 24.9 35 0.0012 25.9 2.0 54 352-413 30-85 (102)
304 2pex_A Transcriptional regulat 24.9 30 0.001 27.6 1.8 44 355-406 52-95 (153)
305 3htu_A Vacuolar protein-sortin 24.9 84 0.0029 22.7 3.9 35 265-299 26-69 (79)
306 4hbl_A Transcriptional regulat 24.8 27 0.00092 27.9 1.5 47 352-406 43-89 (149)
307 3b73_A PHIH1 repressor-like pr 24.6 35 0.0012 26.4 2.1 46 353-406 16-63 (111)
308 4aik_A Transcriptional regulat 24.4 28 0.00097 28.2 1.6 25 382-406 56-80 (151)
309 3by6_A Predicted transcription 24.2 32 0.0011 27.1 1.8 38 375-413 38-75 (126)
310 3ke2_A Uncharacterized protein 24.1 1.2E+02 0.0042 23.5 4.9 33 259-292 27-59 (117)
311 3jw4_A Transcriptional regulat 24.1 31 0.0011 27.4 1.8 46 353-406 44-91 (148)
312 3g3z_A NMB1585, transcriptiona 23.8 37 0.0013 26.8 2.2 47 352-406 33-79 (145)
313 3qp6_A CVIR transcriptional re 23.7 67 0.0023 28.7 4.1 41 249-291 197-237 (265)
314 3mcz_A O-methyltransferase; ad 23.6 84 0.0029 29.0 5.0 34 266-301 56-89 (352)
315 3f8m_A GNTR-family protein tra 23.6 35 0.0012 30.4 2.1 45 359-413 30-75 (248)
316 3mwm_A ZUR, putative metal upt 23.5 56 0.0019 26.1 3.2 65 248-317 10-80 (139)
317 4ham_A LMO2241 protein; struct 23.5 34 0.0011 27.2 1.8 46 358-412 31-77 (134)
318 1ub9_A Hypothetical protein PH 23.4 43 0.0015 24.3 2.4 44 354-405 20-63 (100)
319 3boq_A Transcriptional regulat 23.3 30 0.001 27.8 1.5 47 352-406 49-96 (160)
320 2q0o_A Probable transcriptiona 23.3 78 0.0027 27.5 4.4 41 249-291 175-215 (236)
321 2fe3_A Peroxide operon regulat 23.3 90 0.0031 25.0 4.5 58 354-414 26-84 (145)
322 2xig_A Ferric uptake regulatio 23.2 1E+02 0.0034 24.9 4.8 58 354-414 31-89 (150)
323 2fsw_A PG_0823 protein; alpha- 23.2 62 0.0021 24.3 3.3 51 355-414 30-83 (107)
324 3ic7_A Putative transcriptiona 23.1 38 0.0013 26.6 2.0 34 378-412 41-74 (126)
325 2w57_A Ferric uptake regulatio 23.0 42 0.0014 27.3 2.3 58 354-414 21-80 (150)
326 3oou_A LIN2118 protein; protei 22.9 1.3E+02 0.0046 22.2 5.2 28 264-291 19-46 (108)
327 2xzm_8 RPS25E,; ribosome, tran 22.9 11 0.00036 30.6 -1.3 35 381-415 72-106 (143)
328 1sfu_A 34L protein; protein/Z- 22.8 54 0.0019 23.5 2.5 30 380-409 37-66 (75)
329 3deu_A Transcriptional regulat 22.5 39 0.0013 27.7 2.1 47 352-406 55-102 (166)
330 3eet_A Putative GNTR-family tr 22.5 39 0.0013 30.6 2.3 31 381-412 62-92 (272)
331 3oio_A Transcriptional regulat 22.4 1.2E+02 0.0041 22.7 4.9 27 265-291 22-48 (113)
332 3iz6_V 40S ribosomal protein S 22.4 48 0.0017 25.5 2.4 35 381-415 69-103 (108)
333 2esh_A Conserved hypothetical 22.3 47 0.0016 25.6 2.4 55 349-406 12-69 (118)
334 3tqn_A Transcriptional regulat 22.3 95 0.0033 23.6 4.2 39 261-301 27-66 (113)
335 2lfc_A Fumarate reductase, fla 22.1 61 0.0021 26.6 3.2 25 267-291 96-120 (160)
336 3bwg_A Uncharacterized HTH-typ 21.8 45 0.0016 29.4 2.5 46 358-412 22-68 (239)
337 2k9s_A Arabinose operon regula 21.8 1.5E+02 0.0053 21.8 5.4 27 265-291 19-45 (107)
338 2f2e_A PA1607; transcription f 21.8 43 0.0015 27.0 2.2 50 355-414 29-80 (146)
339 3ech_A MEXR, multidrug resista 21.7 26 0.00088 27.7 0.8 48 351-406 38-85 (142)
340 3s2w_A Transcriptional regulat 21.7 32 0.0011 27.7 1.4 48 351-406 51-98 (159)
341 1u2w_A CADC repressor, cadmium 21.7 45 0.0016 25.8 2.2 51 354-412 46-96 (122)
342 2o03_A Probable zinc uptake re 21.6 96 0.0033 24.3 4.2 64 344-414 10-73 (131)
343 2hoe_A N-acetylglucosamine kin 21.4 65 0.0022 30.4 3.7 61 257-320 25-87 (380)
344 1s3j_A YUSO protein; structura 21.1 56 0.0019 25.9 2.8 44 355-406 42-85 (155)
345 2z99_A Putative uncharacterize 21.1 87 0.003 27.4 4.1 33 259-291 23-55 (219)
346 2hr3_A Probable transcriptiona 20.9 46 0.0016 26.1 2.2 44 355-406 40-84 (147)
347 3u5c_Z RP45, S31, YS23, 40S ri 20.8 50 0.0017 25.4 2.2 35 381-415 68-102 (108)
348 4b8x_A SCO5413, possible MARR- 20.8 35 0.0012 27.4 1.4 26 381-406 60-85 (147)
349 1or7_A Sigma-24, RNA polymeras 20.7 1.2E+02 0.004 24.9 4.9 37 251-289 142-179 (194)
350 2o3f_A Putative HTH-type trans 20.5 58 0.002 25.0 2.6 27 265-291 38-64 (111)
351 3fm5_A Transcriptional regulat 20.5 34 0.0012 27.2 1.3 47 352-406 41-88 (150)
352 3lst_A CALO1 methyltransferase 20.5 1E+02 0.0034 28.6 4.8 34 265-300 54-87 (348)
353 2ek5_A Predicted transcription 20.4 1.8E+02 0.0062 22.7 5.6 39 261-301 22-61 (129)
354 2oqg_A Possible transcriptiona 20.4 43 0.0015 25.2 1.8 46 353-407 24-69 (114)
355 1b4a_A Arginine repressor; hel 20.3 1.3E+02 0.0043 24.6 4.7 39 253-291 6-49 (149)
356 2wv0_A YVOA, HTH-type transcri 20.2 51 0.0017 29.1 2.5 46 358-412 27-73 (243)
357 1oef_A Apolipoprotein E; glyco 20.1 57 0.0019 18.0 1.8 19 381-399 2-20 (26)
358 2d1h_A ST1889, 109AA long hypo 20.0 47 0.0016 24.4 1.9 42 358-407 30-71 (109)
359 3c7j_A Transcriptional regulat 20.0 93 0.0032 27.2 4.2 41 260-302 43-83 (237)
360 1b4a_A Arginine repressor; hel 20.0 82 0.0028 25.7 3.5 57 352-415 7-63 (149)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=5.6e-88 Score=720.23 Aligned_cols=402 Identities=35% Similarity=0.605 Sum_probs=377.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC------CCCCChHHHHHHHHHHHhhcCCCCCCC
Q 014910 10 AVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLS 83 (416)
Q Consensus 10 ~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~------~~~~~~~e~La~y~d~~l~~~~~~~~~ 83 (416)
+.+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+ .+..++||+||+|||.+||++. ++.+
T Consensus 344 ~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~ 422 (760)
T 1ldj_A 344 LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPE 422 (760)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCC
Confidence 47899999999999999999999999999999999999999999986 2346899999999999999865 4567
Q ss_pred hHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHHHHHH
Q 014910 84 DEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQ 163 (416)
Q Consensus 84 ~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~ 163 (416)
++|++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++|+.+||.+||++|++|++|+..|++++
T Consensus 423 e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~ 502 (760)
T 1ldj_A 423 EAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLN 502 (760)
T ss_dssp HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCCHHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecc
Q 014910 164 TSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQ 243 (416)
Q Consensus 164 ~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~lg~~~l~~~~~~ 243 (416)
..|++++.++ ...+++|+|.|||+++||..+..++.+|++|..+++.|++||..+|+||+|+|.|++|+|+|+++|++
T Consensus 503 ~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~ 580 (760)
T 1ldj_A 503 EQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFK 580 (760)
T ss_dssp HHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSS
T ss_pred HHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECC
Confidence 9999987641 23578999999999999998878899999999999999999999999999999999999999999998
Q ss_pred eeEEEEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC-----CCCCCCCCCeEEEccC
Q 014910 244 KNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSK 318 (416)
Q Consensus 244 ~~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~i~~~~~~~lN~~ 318 (416)
+++++.||++||+||++||+.+.+|+++|++.||++.++++++|.+|+ +.+||.+.| +++.+.+++.|++|.+
T Consensus 581 ~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~ 658 (760)
T 1ldj_A 581 NRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLG 658 (760)
T ss_dssp SCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSS
T ss_pred ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeecc
Confidence 999999999999999999999999999999999999999999999997 678998554 7888999999999999
Q ss_pred CCCCcceeeecCCCch----hhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHH
Q 014910 319 FTDRMRRIKIPLPPVD----ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRME 394 (416)
Q Consensus 319 f~~~~~ki~i~~~~~~----e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie 394 (416)
|++++.||+|+.+... |...+.+.+.+||+..||||||||||++|+|+|++|+.+|+++++++|.|++.+||+|||
T Consensus 659 F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie 738 (760)
T 1ldj_A 659 YKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCID 738 (760)
T ss_dssp CCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred ccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 9999999999865432 344567789999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccCCCCCceEecC
Q 014910 395 DLITRDYLERDKENPNMFRYLA 416 (416)
Q Consensus 395 ~Liereyi~r~~~~~~~y~Yia 416 (416)
+||+||||+|+++|+++|+|+|
T Consensus 739 ~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 739 ILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHTTSEEECSSSTTEEEECC
T ss_pred HHhhccceeeCCCCCcceeeCC
Confidence 9999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.6e-87 Score=716.53 Aligned_cols=399 Identities=41% Similarity=0.728 Sum_probs=376.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHhhcCCCCCCChHHHHHHH
Q 014910 12 QEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKKGGNEKLSDEAIEETL 91 (416)
Q Consensus 12 ~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l~~~~~~~~~~~e~~~~l 91 (416)
.+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+|. ++.+++|++..|
T Consensus 357 ~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~~~-k~~~e~e~e~~L 433 (759)
T 2hye_C 357 KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRAGN-KEATDEELERTL 433 (759)
T ss_dssp GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSSCG-GGCCSTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhccCC-CCCCHHHHHHHH
Confidence 4578999999999999999999999999999999999999999864 5789999999999999865 456788999999
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 014910 92 EKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLS 171 (416)
Q Consensus 92 ~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~~S~~l~~~f~~~~~ 171 (416)
++++.||+|+++||+|+.+|+++||+|||.+++++.|.|+.||++|+.+||.+||++|++|++|+..|++++..|++++.
T Consensus 434 ~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~ 513 (759)
T 2hye_C 434 DKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQ 513 (759)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cCCCCCCCcceEEEEeecCCCCCCCCCCccCCHHHHHHHHHHHHHHhhcCCCceEEeccCCceEEEEeEecceeEEEEEc
Q 014910 172 NNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVS 251 (416)
Q Consensus 172 ~~~~~~~~~~~~~~VLs~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~lg~~~l~~~~~~~~~~l~~s 251 (416)
+.+ ...+++|+|.|||+++||..+..++.+|++|..+++.|++||..+|+||+|+|.+++|+|+|+++|+++++++.||
T Consensus 514 ~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs 592 (759)
T 2hye_C 514 NQS-DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVS 592 (759)
T ss_dssp TTC-CCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEE
T ss_pred ccc-CCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEc
Confidence 432 1346899999999999999888889999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeecCC
Q 014910 252 TYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLP 331 (416)
Q Consensus 252 ~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~f~~~~~ki~i~~~ 331 (416)
++||+||++||+.+.+|++||++.||++.++|+++|.+|+++|.+||.+.|+++.+.+++.|.+|.+|+++..|++|+.+
T Consensus 593 ~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i 672 (759)
T 2hye_C 593 LFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQI 672 (759)
T ss_dssp HHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGG
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccc
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999854
Q ss_pred Cc----hhhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 014910 332 PV----DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 407 (416)
Q Consensus 332 ~~----~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 407 (416)
.. +|.+++.+.+.+||+..||||||||||++|+|+|++|+.+|+++++ |.|++.+||+|||+||+||||+|+++
T Consensus 673 ~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~ 750 (759)
T 2hye_C 673 QMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKD 750 (759)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSS
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCC
Confidence 32 3455677889999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred CCCceEecC
Q 014910 408 NPNMFRYLA 416 (416)
Q Consensus 408 ~~~~y~Yia 416 (416)
|+++|+|+|
T Consensus 751 ~~~~y~YlA 759 (759)
T 2hye_C 751 NPNQYHYVA 759 (759)
T ss_dssp CTTEEECCC
T ss_pred CCCeeEecC
Confidence 999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=2.9e-85 Score=646.74 Aligned_cols=356 Identities=32% Similarity=0.510 Sum_probs=324.5
Q ss_pred CChHHHHHHHHHHHhhcCC-CCCCChHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Q 014910 60 SSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLK 138 (416)
Q Consensus 60 ~~~~e~La~y~d~~l~~~~-~~~~~~~e~~~~l~~i~~lf~~l~~KD~F~~~Y~~~La~RLL~~~s~~~~~E~~~i~~Lk 138 (416)
.++||+||+|||.+||++. +++.++++++..|++++.||+|+++||+|+.+|+++||+|||..++.+.|.|+.||++|+
T Consensus 4 ~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kLK 83 (382)
T 3dpl_C 4 SKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWLR 83 (382)
T ss_dssp CCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 5789999999999999863 346789999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCC--hhhHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCccCCHHHHHHHHHHHH
Q 014910 139 QQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYK-SSDLNLPSEMVKCVEVFKG 215 (416)
Q Consensus 139 ~~~G~--~~~~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~VLs~~~WP~~~-~~~~~lP~~l~~~~~~f~~ 215 (416)
+||. +||++|++|++|+..|++++..|++++.+.+....+++|++.||++++||..+ ..++.+|++|..+++.|++
T Consensus 84 -~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 84 -EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp -HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred -HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 9997 99999999999999999999999998754432224689999999999999874 5689999999999999999
Q ss_pred HHhhcCCCceEEeccCCceEEEEeEecceeEEEEEcHHHHHHHHhhhCC--CCcCHHHHHHHcCCCHHHHHHHHHhhhcc
Q 014910 216 FYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCA 293 (416)
Q Consensus 216 ~Y~~k~~~R~L~w~~~lg~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~ 293 (416)
||..+|+||+|+|.|++|+|+|+++++++++++.||++||+||++||+. +.+|++||++.||++.++|+++|++|++.
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998999999999999999999985 79999999999999999999999999863
Q ss_pred ---cceeeecCCC---CCCCCCCCeEEEccCCCCC-----cceeeecCCC------chhhhhHHHhHHHhhhhhhceeee
Q 014910 294 ---KYKILLKEPN---TKTISQSDHFEFNSKFTDR-----MRRIKIPLPP------VDERKKIVEDVDKDRRYAIDAALV 356 (416)
Q Consensus 294 ---k~~iL~~~~~---~~~i~~~~~~~lN~~f~~~-----~~ki~i~~~~------~~e~~~~~~~~~~~r~~~i~A~IV 356 (416)
|++||.++|. ++++.++|.|.+|.+|++. .+|++|+.++ ..+.+++.+.+.+||++.||||||
T Consensus 243 ~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIV 322 (382)
T 3dpl_C 243 PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII 322 (382)
T ss_dssp TTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEe
Confidence 5689998875 3568889999999999862 2567776542 134456778899999999999999
Q ss_pred ehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 014910 357 RIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416 (416)
Q Consensus 357 RimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 416 (416)
||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+|+++|+++|+|+|
T Consensus 323 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 323 QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred hhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 4
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.94 E-value=8e-28 Score=183.87 Aligned_cols=82 Identities=32% Similarity=0.689 Sum_probs=79.1
Q ss_pred hhhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 014910 334 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 413 (416)
Q Consensus 334 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 413 (416)
+|..++.+.+.++|+..||||||||||++|+|+|++|+.+|+++++++|+|++.+||++||+||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 566778899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred ecC
Q 014910 414 YLA 416 (416)
Q Consensus 414 Yia 416 (416)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 5
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.94 E-value=4.8e-28 Score=180.76 Aligned_cols=75 Identities=49% Similarity=0.781 Sum_probs=73.4
Q ss_pred hHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 014910 342 DVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416 (416)
Q Consensus 342 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 416 (416)
.+++||+..||||||||||++|+|+|++|+.+|+++++++|.|++.+||++||+|||||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.93 E-value=9.6e-28 Score=185.47 Aligned_cols=82 Identities=49% Similarity=0.748 Sum_probs=76.9
Q ss_pred hhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 335 ERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 335 e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
|..++.+.+.+||++.||||||||||++|+|+|++|+.+|.++++++|.|++.+||++||+||+||||+|+++|++.|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 34456677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 014910 415 LA 416 (416)
Q Consensus 415 ia 416 (416)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred cC
Confidence 98
No 7
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=6e-27 Score=183.53 Aligned_cols=81 Identities=56% Similarity=0.837 Sum_probs=76.7
Q ss_pred hhhhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 014910 334 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 413 (416)
Q Consensus 334 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 413 (416)
+|..++.+.+.+||++.||||||||||++|+|+|++|+.+|.++++ |.|++.+||++||.||+||||+|+++|++.|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEE
Confidence 3455567889999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ecC
Q 014910 414 YLA 416 (416)
Q Consensus 414 Yia 416 (416)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred Eec
Confidence 998
No 8
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=98.82 E-value=2.8e-09 Score=105.80 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHh
Q 014910 10 AVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNIL 74 (416)
Q Consensus 10 ~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l 74 (416)
..+|..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. +.||+||+|||.--
T Consensus 335 ~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~ 396 (410)
T 4ap2_B 335 GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQS 396 (410)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC------------------
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCcc
Confidence 357889999999999999999999999999999999999999999974 67899999999843
No 9
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=97.94 E-value=7.7e-06 Score=80.52 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Q 014910 10 AVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV 57 (416)
Q Consensus 10 ~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~ 57 (416)
+.+|..||+.|+++|++|+.++.+||++|+.|..|+++||+.|+|.++
T Consensus 334 ~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 334 TTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 478999999999999999999999999999999999999999999763
No 10
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.05 E-value=0.092 Score=37.62 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=46.5
Q ss_pred eehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 014910 356 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416 (416)
Q Consensus 356 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 416 (416)
|...|.+|.+..++|-. .|..+.+++..+|+.|.+.|-|.--=+|++.|+||.
T Consensus 13 i~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 13 INYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 66778889888888766 488999999999999999999988878899999984
No 11
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=90.70 E-value=0.33 Score=36.67 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=41.9
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+..+..||..+.+.+.+|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 46788888888877789999999999999999999999996 45777654
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=90.58 E-value=0.27 Score=36.03 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHhhhCC------CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCC
Q 014910 256 ATLLLFNTS------DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKT 306 (416)
Q Consensus 256 ~iLl~Fn~~------~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~ 306 (416)
.||....+. ...|+.||++.+|++...+.+.|..|. +.++|.+.+.+..
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCC
Confidence 455555544 689999999999999999999999996 5678887765443
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.37 E-value=0.35 Score=35.34 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHHhhhCCC---CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 254 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 254 Q~~iLl~Fn~~~---~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+..||.++.+.. .+|..||++.+|++...+.+.|..|. +.+++...+
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~g 65 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 355665555544 89999999999999999999999996 456776543
No 14
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.31 E-value=0.13 Score=52.89 Aligned_cols=135 Identities=10% Similarity=0.109 Sum_probs=49.3
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcc---cceeeecCCCCCCCCCCCeEEEccCCCCCcceee
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCA---KYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIK 327 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~---k~~iL~~~~~~~~i~~~~~~~lN~~f~~~~~ki~ 327 (416)
+..+..||..+.+...+|..+|++.+|++...+.+.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4567788877777889999999999999999999999999741 14677653 36788877642211100
Q ss_pred ecCCCchhhhhH-HHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 328 IPLPPVDERKKI-VEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 328 i~~~~~~e~~~~-~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+. ....-+ ...+ + ....+..|+..++.++.++-.|+...+ ..+...+...|..|++.|-|++.+
T Consensus 500 -~~---~~~~~~~~~~~--~-~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -EP---SPFSPVRYLST--D-QAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -cc---ccccccccccC--C-hhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEEeC
Confidence 00 000000 0000 1 234567799999999999988877743 246677899999999999999876
Q ss_pred CCC
Q 014910 407 ENP 409 (416)
Q Consensus 407 ~~~ 409 (416)
..+
T Consensus 565 ~gr 567 (583)
T 3lmm_A 565 GGR 567 (583)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 15
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=89.89 E-value=0.39 Score=36.38 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=43.2
Q ss_pred EEEEcHHHHHHHHhhhC--CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 247 ELIVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 247 ~l~~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
...++..|..||....+ .+.++..||++.++++...+.++|..|.. .+++.+
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIkr 68 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 68 (91)
T ss_dssp CCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 34567889999987776 56899999999999999999999999973 466653
No 16
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=89.71 E-value=0.45 Score=38.64 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=44.6
Q ss_pred EEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 248 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+.+|+.|..||..+...+ +|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 356889999999998888 9999999999999999999999997 457887653
No 17
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=89.70 E-value=0.75 Score=34.83 Aligned_cols=49 Identities=18% Similarity=0.286 Sum_probs=40.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+.....||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~ 70 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRK 70 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 4566778877766 789999999999999999999999996 457887553
No 18
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.47 E-value=0.4 Score=39.03 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=44.2
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 578899999888777789999999999999999999999997 457887653
No 19
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=89.41 E-value=0.41 Score=35.15 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhhCC--CCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
..+.-+..||..+.+. ..+|++||++.+ +++...+.+.|..|. +.+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEE
Confidence 4577888899888765 589999999999 999999999999997 45777654
No 20
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=89.25 E-value=0.33 Score=39.40 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=45.3
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+|..|..||..+...+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 3578899999988888899999999999999999999999997 457887653
No 21
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.08 E-value=0.36 Score=36.91 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~--~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLL--KRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 577899999888776789999999999999999999999997 45777653
No 22
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.97 E-value=0.95 Score=33.04 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 256 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 256 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
.||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.+.+. ..+..|.++..
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~--~~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLE--KAGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEEECCSS--SSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeccCC--CCcEEEEEChh
Confidence 456666656789999999999999999999999997 346776432211 12345666554
No 23
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=88.92 E-value=0.32 Score=39.49 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=41.6
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+|..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 4678899999988888899999999999999999999999997 457887653
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=88.79 E-value=0.8 Score=34.61 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=43.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
+..+..||..+ ...+++.||++.+|++...+.++|..|. +.+++.+.. ..|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 45567777767 3579999999999999999999999997 457776542 27777654
No 25
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.32 E-value=0.52 Score=38.41 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=44.4
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE--EKKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 4678899999988888899999999999999999999999997 457887653
No 26
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.31 E-value=0.81 Score=33.77 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=41.2
Q ss_pred HHHHHHhhhCCC---CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 254 QAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 254 Q~~iLl~Fn~~~---~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
+..||..+.+.. .+|..+|++.+|++...+.+.|..|. +.+++.+.+. ....|.+...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeCc
Confidence 555666665555 89999999999999999999999996 3466665431 1256666543
No 27
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=88.22 E-value=0.72 Score=37.92 Aligned_cols=50 Identities=6% Similarity=0.143 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 477899999988888899999999999999999999999997 45777654
No 28
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=88.05 E-value=0.43 Score=39.16 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|..||..+...+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578899999988877899999999999999999999999997 457887653
No 29
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=87.79 E-value=0.42 Score=38.29 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhhCC--CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.++..|..||..+... +.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 4577899988877666 789999999999999999999999997 457887653
No 30
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.66 E-value=0.51 Score=37.74 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhhhCCCC--cCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDR--LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~--~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+.+.+. +|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 457789999987765555 9999999999999999999999997 45777653
No 31
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=87.61 E-value=0.37 Score=39.15 Aligned_cols=51 Identities=18% Similarity=0.200 Sum_probs=44.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578899999888777899999999999999999999999997 457887653
No 32
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.61 E-value=0.55 Score=34.42 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 257 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 257 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
|+...++++.++++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le--~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLE--SMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 56677888899999999999999999999999997 34666665
No 33
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.46 E-value=0.65 Score=37.57 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhh-hCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+ ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeec
Confidence 467899999888 777889999999999999999999999997 45777654
No 34
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=87.36 E-value=0.52 Score=39.25 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 577899999888877899999999999999999999999997 457877653
No 35
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=87.29 E-value=0.83 Score=36.96 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|+.||..+. .+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE--EMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH--HCCCEEee
Confidence 4778999998887 7899999999999999999999999997 34777654
No 36
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=87.24 E-value=0.64 Score=38.13 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578899999888877889999999999999999999999997 4577776
No 37
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=87.20 E-value=0.55 Score=37.78 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhhCCC--CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|..||..+...+ .+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 5678999998776654 89999999999999999999999997 457777643
No 38
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.01 E-value=0.51 Score=37.86 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~--~~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE--ESGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 477899999888777899999999999999999999999997 44777654
No 39
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=86.88 E-value=0.92 Score=33.51 Aligned_cols=44 Identities=11% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 255 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 255 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
..||.++.... .|+.||++.+|++...+.++|..|. +-+++.+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSS 63 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC
Confidence 34444444444 9999999999999999999999996 34677654
No 40
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.80 E-value=0.61 Score=34.95 Aligned_cols=43 Identities=7% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 257 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 257 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
|+...++.+.++++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 56667888899999999999999999999999997 44666654
No 41
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=86.54 E-value=0.78 Score=36.86 Aligned_cols=50 Identities=10% Similarity=0.233 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhhCCC--CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+ .+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME--IKKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH--HCCCEEee
Confidence 5778998888777665 89999999999999999999999997 45777654
No 42
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.52 E-value=0.92 Score=34.56 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=39.6
Q ss_pred EcHHHHHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..+|+.+-. .+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEee
Confidence 35667777655433 6789999999999999999999999997 45777654
No 43
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=86.44 E-value=0.75 Score=37.57 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeec
Confidence 577899999888877799999999999999999999999997 45777654
No 44
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=86.27 E-value=0.79 Score=37.94 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~ 96 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRE 96 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeee
Confidence 3577899999888877899999999999999999999999997 45777754
No 45
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=86.26 E-value=1.8 Score=32.94 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=44.9
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
++....||..+.+ +..++.||++.+|++...+.++|..|. ..+++.....|. ...|.++..
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECSS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECcH
Confidence 4456667766655 569999999999999999999999996 457887654332 345666553
No 46
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=86.25 E-value=0.62 Score=37.39 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV--CKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH--HCCCEEec
Confidence 477899999888777789999999999999999999999997 44777654
No 47
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=86.10 E-value=1.2 Score=35.28 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=39.8
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++.+..||..+...+.+|+.+|++.+|++...+-++|..|. ..+++...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~ 89 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFR 89 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 44566777777655689999999999999999999999997 45777654
No 48
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=86.10 E-value=0.55 Score=39.08 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=44.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 577899999888777799999999999999999999999997 457887653
No 49
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=85.78 E-value=0.49 Score=37.94 Aligned_cols=50 Identities=12% Similarity=0.321 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMK--RDGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCeeec
Confidence 578899999888877889999999999999999999999997 34777654
No 50
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=85.71 E-value=1.1 Score=32.82 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHcCCCHH-HHHHHHHhhhcccceeeecCC
Q 014910 252 TYQAATLLLFNTSDRLSYSEIMTQLNLTHD-DLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 252 ~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~-~l~~~L~~L~~~k~~iL~~~~ 302 (416)
..+--||.+.......|..+|++.+|++.. .+.++|..|- +-+++.+.+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~~ 60 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQG 60 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEEC
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEecC
Confidence 456667777777789999999999999999 9999999996 446665543
No 51
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=85.51 E-value=0.9 Score=34.39 Aligned_cols=51 Identities=6% Similarity=0.047 Sum_probs=43.4
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHH----HHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEI----MTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei----~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+| ++.++++...+.+.|..|. +.+++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 357789999998888889999999 8999999999999999997 34777653
No 52
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=85.28 E-value=0.79 Score=38.45 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
++..|+.||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 56789999988776 5689999999999999999999999997 457887653
No 53
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=85.17 E-value=0.79 Score=37.56 Aligned_cols=50 Identities=26% Similarity=0.280 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ--AAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 477899999888777889999999999999999999999997 45777654
No 54
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=85.15 E-value=0.77 Score=36.91 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=43.3
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~--~~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLE--ESGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 4577899999888777789999999999999999999999997 34677654
No 55
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=85.07 E-value=0.61 Score=37.44 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=43.2
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~--~~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLD--KRGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 3577899999888777799999999999999999999999997 34677653
No 56
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=84.84 E-value=0.66 Score=38.94 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 4578899999888777789999999999999999999999997 45777654
No 57
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=84.80 E-value=0.69 Score=37.39 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le--~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLE--EQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 477899999888777889999999999999999999999997 34777654
No 58
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.71 E-value=0.87 Score=36.92 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+.. .+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le--~~glv~r~ 83 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELE--RGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCEeeC
Confidence 357889999988877 7789999999999999999999999997 45777654
No 59
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=84.67 E-value=0.54 Score=38.96 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 466788899888777899999999999999999999999997 45777764
No 60
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=84.58 E-value=0.83 Score=37.85 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=43.4
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ--ADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 577899999888877889999999999999999999999997 44777654
No 61
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=84.30 E-value=1.9 Score=31.10 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 258 LLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 258 Ll~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+..+.+.+..|..+|+..+|++...+.++|-+|. +.+.+.+.+
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 4566677779999999999999999999999996 345555443
No 62
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=84.28 E-value=0.61 Score=37.68 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRME--QVDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 577899999888877789999999999999999999999997 34777654
No 63
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=84.28 E-value=1.1 Score=34.00 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=43.8
Q ss_pred EEEcHHHHHHHHhhhCCCCcCHHHHHH-HcCCCHHHHHHHHHhhhcccceeee
Q 014910 248 LIVSTYQAATLLLFNTSDRLSYSEIMT-QLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~-~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|. +.+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 356788999999887778999999999 99999999999999997 457775
No 64
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=84.19 E-value=0.85 Score=37.13 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME--RNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 577899999888777789999999999999999999999997 34677653
No 65
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.13 E-value=0.67 Score=37.48 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~--~~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE--ADGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 577899999888777789999999999999999999999997 34777653
No 66
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.12 E-value=0.91 Score=37.30 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE--KRGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 577899999888777789999999999999999999999997 44777654
No 67
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.07 E-value=0.96 Score=38.43 Aligned_cols=66 Identities=8% Similarity=0.115 Sum_probs=43.1
Q ss_pred cCCceEEEEeEecceeEEEEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 230 YSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 230 ~~lg~~~l~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
|+.+++.+...- .-...++..+..||..+.....+|+.||++.+|++...+.+.|..|. +.+++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~--~~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEe
Confidence 445555555432 12345778888999888887899999999999999999999999996 3466653
No 68
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=83.96 E-value=0.93 Score=33.10 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=43.2
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcC----CCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~--~kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLI--KKGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH--HCCCeEEEe
Confidence 35788999998887778899999999996 68899999999997 457777653
No 69
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=83.69 E-value=0.82 Score=37.08 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEecc
Confidence 577899999888777789999999999999999999999997 457777643
No 70
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.66 E-value=0.71 Score=37.86 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=43.6
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLE--QKNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 3577899999888777789999999999999999999999997 34777654
No 71
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.63 E-value=0.71 Score=33.81 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=36.7
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
|...++.++.++.+||.. .|..+...|..-|+.|.++|+|+|.
T Consensus 7 Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 556677778888877766 5889999999999999999999997
No 72
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.55 E-value=1.5 Score=35.42 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=38.7
Q ss_pred EcHHHHHHHHhhh-CCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn-~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..+|..+. ..+++|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3556666654442 34689999999999999999999999997 45787764
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=83.49 E-value=1.1 Score=36.64 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhh-CCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn-~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|..||.... ..+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 4678999998775 34478999999999999999999999997 457887643
No 74
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=83.46 E-value=0.51 Score=38.56 Aligned_cols=51 Identities=8% Similarity=0.121 Sum_probs=36.8
Q ss_pred EcHHHHHHHHhhhCC--CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|..||..+... +.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 577899998877665 789999999999999999999999997 457887653
No 75
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.26 E-value=0.67 Score=37.27 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le--~~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE--RDGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 577899999888777789999999999999999999999997 34677654
No 76
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=83.07 E-value=3 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 256 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 256 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
.|--++++...+|+.+|++.+|++.+++..+|..|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 3445677777999999999999999999999999974
No 77
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=82.93 E-value=0.81 Score=37.07 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+|+.|..||......+. |..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le--~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLE--AKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 457789999988887777 999999999999999999999997 44777654
No 78
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=82.78 E-value=0.91 Score=37.28 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhh--hCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|+.+|..+ ++.+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 467788777655 445679999999999999999999999997 457887654
No 79
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=82.10 E-value=2 Score=35.41 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|+.+|..... .+..+..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999987764 4577889999999999999999999997 457887654
No 80
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=82.01 E-value=0.86 Score=37.27 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=42.8
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
.+|..|..||..+ ..+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 4578899999888 77899999999999999999999999997 4577775
No 81
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=81.95 E-value=1.1 Score=33.72 Aligned_cols=48 Identities=15% Similarity=0.287 Sum_probs=39.8
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++.+..||..+...+.+|..+|++.+|++...+.++|..|. +.+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~--~~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLE--RNGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 56788888777655689999999999999999999999997 3466654
No 82
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=81.92 E-value=1.3 Score=36.06 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=40.8
Q ss_pred EEEcHHHHHHHHhhhC-----CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 248 LIVSTYQAATLLLFNT-----SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~-----~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
+-+|.-++.+|+.+-. ....|.++|++.+|++..++.+.|..|.. .++|..
T Consensus 28 LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 5667788888876543 35689999999999999999999999984 366654
No 83
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=81.84 E-value=1.1 Score=38.43 Aligned_cols=51 Identities=18% Similarity=0.270 Sum_probs=43.4
Q ss_pred EcHHHHHHHHhhhC--CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+|..|..||..... .+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 68889999987764 4589999999999999999999999997 457887643
No 84
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=81.70 E-value=0.9 Score=37.47 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=43.8
Q ss_pred EEcHHHHHHHHhh-hCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|+.||..+ ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 44 ~l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~ 95 (160)
T 3boq_A 44 GLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKA 95 (160)
T ss_dssp SCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 3578899999888 567789999999999999999999999997 45788764
No 85
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.68 E-value=1.1 Score=34.64 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+..+..||..+ ..+.+|+.+|++.+|++...+.++|..|. +.+++.+.
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 45677778777 34579999999999999999999999996 45777653
No 86
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=81.48 E-value=1.5 Score=33.82 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++.+..||..+. ...+++.||++.+|++...+.++|..|. ..+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 455667776666 4578999999999999999999999997 45777643
No 87
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=81.28 E-value=3.8 Score=34.26 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=42.0
Q ss_pred HHHHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 253 YQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 253 ~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++..... +++-|.+..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIRG-----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECS-----TTCEEEECSC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEecC-----CCCceEecCC
Confidence 34444444443 3479999999999999999999999996 5688764321 3456777654
No 88
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=81.20 E-value=0.65 Score=33.95 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=42.8
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
.|.+++-..+.++..+|...+-.. -.++...+...|+.|.++|||+|..+ ...+.|-
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 345555556778888888877542 23578889999999999999999874 4577774
No 89
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=81.20 E-value=1.1 Score=39.34 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
++..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578899999888777789999999999999999999999997 457887653
No 90
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=81.12 E-value=1.1 Score=34.37 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=44.5
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEecC
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 416 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 416 (416)
-|..|++++-....++..||...+.. .-.++...|...|+.|.++|||+|..+ ...|.|-|
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 35556666666667777777765432 123578889999999999999999864 57888865
No 91
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=80.76 E-value=3.9 Score=33.46 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=40.1
Q ss_pred HHHHHhhhCC-CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 255 AATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 255 ~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
+.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++..... +++.|.+..+
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~rG-----~~GGy~Lar~ 73 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVRG-----AKGGYQLRVP 73 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECSS-----SSSEEEESSC
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecCC-----CCCCeeecCC
Confidence 3333433332 479999999999999999999999996 5678764321 2456777543
No 92
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=80.21 E-value=0.8 Score=34.29 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=36.2
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
|...++.++.++.+||.. .|..+...|..-|+.|.++|+|+|..
T Consensus 7 Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455666777777777665 58899999999999999999999973
No 93
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=79.93 E-value=2.2 Score=35.81 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=35.8
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
+++.+.+.-+....+|.++|++.++++...+.+.|..|. +.+++..
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s 60 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTG 60 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 344444544555679999999999999999999999996 5677754
No 94
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=79.77 E-value=2.4 Score=34.74 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=40.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
+..+..||..+.+...+|+.+|++.+|++...+.+.|..|. +.+++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE--KDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEE
Confidence 34577788888888899999999999999999999999996 3567654
No 95
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=79.75 E-value=1.1 Score=31.52 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHhhhCC-CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 253 YQAATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 253 ~Q~~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|.. .+++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEe
Confidence 344577666544 4799999999999999999999999974 34444
No 96
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=79.16 E-value=2.2 Score=35.00 Aligned_cols=49 Identities=12% Similarity=0.158 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++..+..||..+.+...+|+.+|++.+|++...+.+.|..|. +.+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE--SRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 566788888888777889999999999999999999999996 3466643
No 97
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=78.98 E-value=2.3 Score=34.08 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=40.5
Q ss_pred EEEcHHHHHHHHhhh---C--CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 248 LIVSTYQAATLLLFN---T--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn---~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+-++.-|+.+|+.+- + ....|.++|++.+|++..++.+.|..|. +.++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 345677777775543 2 2348999999999999999999999997 457887653
No 98
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.66 E-value=1.2 Score=34.45 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=36.9
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 34556666654 678999999999999999999999996 45777654
No 99
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=77.90 E-value=1.8 Score=39.07 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 3567888999887666789999999999999999999999997 45777653
No 100
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=77.88 E-value=2.3 Score=32.38 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=41.6
Q ss_pred EEcHHHHHHHHhhhCC------CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 249 IVSTYQAATLLLFNTS------DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~------~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
-+++.|..+|..+.+. ..++..+|++.++++...+.+.|..|. +.+++..
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 3688999998866544 679999999999999999999999996 4567654
No 101
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=77.30 E-value=5.8 Score=31.49 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 264 SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 264 ~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
...+|..+|++.+|+|...+.+.|..|. +.+++..... .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecCC-----CCCceEeCCC
Confidence 3579999999999999999999999997 4677765321 2345766554
No 102
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.85 E-value=2.9 Score=34.04 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=40.4
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++..+-.||..+.+...+|..+|++.+|++...+.+.|..|. +.+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLE--SFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 355677788878777889999999999999999999999996 3466653
No 103
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=76.71 E-value=2.2 Score=34.75 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.7
Q ss_pred hccCCCCChHHHHHHHHhhhhhccccc
Q 014910 378 LSRMFKPDIKAIKKRMEDLITRDYLER 404 (416)
Q Consensus 378 l~~~F~~~~~~ik~~Ie~Liereyi~r 404 (416)
++++...+...|.+.|..|+++|||++
T Consensus 57 LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 57 LQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 444677889999999999999999999
No 104
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=76.67 E-value=2.1 Score=43.32 Aligned_cols=136 Identities=11% Similarity=0.107 Sum_probs=86.0
Q ss_pred HHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeecCCCchh
Q 014910 256 ATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDE 335 (416)
Q Consensus 256 ~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~f~~~~~ki~i~~~~~~e 335 (416)
.|.-....++.+|+.+|...|+++...++.+|-.|+. .+++...+.+. ....|.+|.+ .-..+++.|-
T Consensus 23 ~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk----- 90 (534)
T 2xub_A 23 KIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR----- 90 (534)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH-----
T ss_pred HHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH-----
Confidence 3333333467899999999999999999999999974 56665432110 1234555432 0011111110
Q ss_pred hhhHHHhHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccC----CCCChHHHHHHHHhhhhhccccccCC
Q 014910 336 RKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRM----FKPDIKAIKKRMEDLITRDYLERDKE 407 (416)
Q Consensus 336 ~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~Liereyi~r~~~ 407 (416)
. -...+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 91 ---~-l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 91 ---Y-IYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp ---H-HHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred ---H-HHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 0 00111111122356666677789999999999988765321 12578899999999999999999873
No 105
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=76.61 E-value=4.2 Score=33.42 Aligned_cols=57 Identities=9% Similarity=0.046 Sum_probs=39.8
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
.+.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 34444444344579999999999999999999999997 567876432 1345666554
No 106
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=76.36 E-value=2.7 Score=35.55 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=42.0
Q ss_pred EEEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 247 ELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 247 ~l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
...++..+..||..+.....+|+.+|++.+|++...+.+.|..|. +.+++.
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~--~~G~I~ 62 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQ--ERGVIE 62 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEE
Confidence 345677788888888877899999999999999999999999996 346664
No 107
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=76.05 E-value=1.3 Score=37.05 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=39.4
Q ss_pred EcHHHHHHHHhhhC--CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeec
Confidence 57789999887766 3589999999999999999999999997 45788764
No 108
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=75.85 E-value=1.8 Score=34.20 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcC----CCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+|..|..||..+-+.+++|..||++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998887778999999999997 57899999999997 45777764
No 109
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=75.66 E-value=2.6 Score=38.31 Aligned_cols=55 Identities=13% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHhhhCC-CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 256 ATLLLFNTS-DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 256 ~iLl~Fn~~-~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
.||.+|.+. ..+|+.||++.+|++...+.+.|..|. ..+++.+.+ .+..|.+-..
T Consensus 10 ~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~------~~~~Y~lG~~ 65 (260)
T 3r4k_A 10 TLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVE------GARSYRLGPQ 65 (260)
T ss_dssp HHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECS------SSSEEEECTT
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcC------CCCcEEcCHH
Confidence 477788864 689999999999999999999999997 468887753 2356776544
No 110
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=75.50 E-value=2.4 Score=34.25 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=39.8
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
+..+..||..+.....+++.+|++.+|++...+.+.|..|. +.+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALE--EKGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEec
Confidence 44577788878777789999999999999999999999996 3467654
No 111
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=75.27 E-value=3.8 Score=36.66 Aligned_cols=55 Identities=13% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHhhhCCC-CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 256 ATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 256 ~iLl~Fn~~~-~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
.||..|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+.+ .+..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~------~~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALG------PAGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECG------GGCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeC------CCCeEEECHH
Confidence 5777787654 79999999999999999999999997 457887643 1346766543
No 112
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.94 E-value=3.3 Score=33.92 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
++..+..||..+.+...+|+.+|++.+|++...+.+.+..|. +.+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK--KLGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH--HHTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEE
Confidence 456677888888888899999999999999999999999996 346665
No 113
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.91 E-value=3.2 Score=34.09 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=40.8
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
++..+..||..+.+...+|+.+|++.+|++...+.+.|..|. +.+++.
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~ 53 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMK--QAGIIT 53 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HcCCcc
Confidence 456777888888877899999999999999999999999996 346665
No 114
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=74.89 E-value=2.8 Score=32.74 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=38.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
+..|..||..+.+ ...|+.+|++.+|++...+-++|..|.. .+++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 3567888877766 6789999999999999999999999973 566654
No 115
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.83 E-value=4.1 Score=27.69 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.6
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHc-----CCCHHHHHHHHHhh
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSL 290 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~-----~i~~~~l~~~L~~L 290 (416)
+..|+.+++....+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455566667789999999999 99999999999855
No 116
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=74.49 E-value=3.6 Score=33.18 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhhC-CCCcCHHHHHHHcC----CCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNT-SDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+|..|..||..+-+ .+.+|..||++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 57889999988877 47899999999998 79999999999997 45777764
No 117
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=74.46 E-value=6.5 Score=27.85 Aligned_cols=57 Identities=7% Similarity=0.148 Sum_probs=42.2
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCC
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFT 320 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~f~ 320 (416)
.-.|.-+|.++.-||+.+|...|+=|...|+.+|...+ ++.+.+. -...|.+-.+|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34566789999999999999999999999999998774 4444431 134566655553
No 118
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=74.10 E-value=3.4 Score=32.40 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=39.4
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++.+..||..+.+ +..++.||++.+|++...+.++|..|. ..+++...
T Consensus 19 ~~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 67 (118)
T 2jsc_A 19 ADPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVAT 67 (118)
T ss_dssp SSHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 35667778877764 468999999999999999999999996 45777654
No 119
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=73.93 E-value=3.8 Score=33.50 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=37.4
Q ss_pred EcHHHHHHHHhhhCC-----CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 250 VSTYQAATLLLFNTS-----DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~-----~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
+|..|+.+|...... +.+|..+|++.++++...+.+.+..|. +.+++.
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le--~~glVr 83 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR--RDGLVR 83 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH--HTTSBC
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEE
Confidence 577899999877654 358999999999999999999999997 346663
No 120
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=72.93 E-value=3.5 Score=33.82 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++..+..||..+.+...+|+.+|++.+|++...+.+.|..|. +.+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHH--HHTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 456677888888877899999999999999999999999996 3466653
No 121
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=72.70 E-value=4.1 Score=33.84 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=40.8
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++..+..||..+.+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLE--DAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEee
Confidence 456677888888877889999999999999999999999996 3456653
No 122
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=72.51 E-value=2.8 Score=41.47 Aligned_cols=53 Identities=21% Similarity=0.165 Sum_probs=46.0
Q ss_pred EEEcHHHHHHHHhhhCC--CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 248 LIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+.+|..|..||..+.++ +.+|..+|++.++++...+.+.|..|. +.+++.+..
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 34688999999988887 889999999999999999999999997 457887653
No 123
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=72.49 E-value=6.2 Score=27.53 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=33.5
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.++.-|..|+.++ ....|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3577788888777 3567999999999999999988887764
No 124
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=72.39 E-value=3.5 Score=37.26 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhhCCC--CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+|..|..||......+ .+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 35778999998876654 59999999999999999999999997 457887754
No 125
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=72.32 E-value=4.8 Score=31.85 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=37.7
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++.+..||..+.+ +..++.+|++.+|++...+-++|..|.. .+++...
T Consensus 45 ~~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~ 92 (122)
T 1r1t_A 45 DPNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYR 92 (122)
T ss_dssp CHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 3456667766654 5789999999999999999999999973 5676543
No 126
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=71.91 E-value=2.2 Score=33.40 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=42.8
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcC----CCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.++..|..||..+...+.+|..+|++.++ ++...+.+.|..|. +.+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEE
Confidence 46788999998776677899999999999 77999999999997 45777653
No 127
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=71.68 E-value=3.2 Score=37.99 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHhhhCCC-CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 256 ATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 256 ~iLl~Fn~~~-~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.||.+|.+.. .+|+.||++.+|++...+.+.|..|. ..++|.+.
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~--~~G~v~~~ 78 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMT--ELDLLARS 78 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEC
Confidence 4778887654 79999999999999999999999997 45788765
No 128
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=71.64 E-value=7.4 Score=31.71 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
.+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+++.... .++-|.+..+
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~r------G~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRA------GVPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCS------SSSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeec------CCCCceecCC
Confidence 33444444443 5 999999999999999999999996 678886432 1344666554
No 129
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.28 E-value=3 Score=30.29 Aligned_cols=58 Identities=3% Similarity=0.115 Sum_probs=42.8
Q ss_pred eeeehhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 354 ALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 354 ~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
.|...+... +.++..||...+.+.. ...+...|-..|+.|.+.|+|.|...+.+...|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 455566554 6799999999876532 246888999999999999999997653344444
No 130
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=70.88 E-value=3.8 Score=32.06 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=38.7
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++....||.++.+ +.+++.+|++.+|++...+-++|..|. +.+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4456667766664 678999999999999999999999996 46787654
No 131
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=70.66 E-value=6.1 Score=29.44 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=35.6
Q ss_pred EEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 248 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
..+|.-|..||.++- .++|..||++.+|++...++.++..+.
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788888888776 578999999999999999999988775
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=70.04 E-value=2.8 Score=37.86 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=44.0
Q ss_pred EEcHHHHHHHHhhhCC--CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+|..|..||..+.++ +++|..||++.++++...+.+.|..|. +.+++.+..
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 4688899999988764 589999999999999999999999997 457777653
No 133
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=69.97 E-value=7 Score=28.37 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.++.-|..||.++ ...+|.+||++.+|++...++..+....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567777788776 3578999999999999999998887664
No 134
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=69.77 E-value=2.5 Score=31.83 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=37.8
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCC
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPN 410 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 410 (416)
|...+...+.++..+|...+.+ .+..+...+-..|..|.++|||+|..+.+.
T Consensus 13 iL~~l~~~~~~~~~el~~~la~----~l~is~~tvs~~l~~Le~~gli~r~~~~r~ 64 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNA----EFPMSTATFYDAKKFLIQEGFVKERQERGE 64 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHcCCcCHHHHHHHHHH----HcCCCHHHHHHHHHHHHHCCCEEEEecCCc
Confidence 4444455567777777655433 466889999999999999999999764433
No 135
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=69.68 E-value=1.5 Score=34.65 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=41.6
Q ss_pred eeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 353 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 353 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
..|.+++-....++..+|...+.. ...++...+...|+.|.++|||+|..+ ...+.|.
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~-~r~~~~~ 70 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKS-ENIYFYS 70 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeC-CCeEEEE
Confidence 344555555667787777776542 123578889999999999999999875 4566664
No 136
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=68.68 E-value=7.2 Score=34.94 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=41.6
Q ss_pred HHHHHhhhCCC-CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 014910 255 AATLLLFNTSD-RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 317 (416)
Q Consensus 255 ~~iLl~Fn~~~-~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~ 317 (416)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|. +.+++.+. .+..|.+..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~-------~~~~Y~lg~ 65 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRK-------KDKRYVPGY 65 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC-------TTSCEEECT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEC-------CCCcEEECH
Confidence 45777787654 79999999999999999999999997 45777653 234566644
No 137
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=68.42 E-value=1.1 Score=34.30 Aligned_cols=52 Identities=21% Similarity=0.187 Sum_probs=41.6
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcC----CCHHHHHHHHHhhhcccceeeecCC
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLN----LTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~----i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+|..|..||..+-+.+.+|..||++.++ ++...+.+.|..|. +.+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEe
Confidence 46777888887776667899999999997 45789999999997 457777653
No 138
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=68.02 E-value=4.3 Score=30.27 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHHhhhCCC-CcCHHHHHHHcCCCHHH-HHHHHHhhhcccceeee
Q 014910 253 YQAATLLLFNTSD-RLSYSEIMTQLNLTHDD-LVRLLHSLSCAKYKILL 299 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~-~~t~~ei~~~~~i~~~~-l~~~L~~L~~~k~~iL~ 299 (416)
-+..+|..+...+ .+|..+|++.+|++... +.+.|..|. +.+++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le--~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI--RAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH--HTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH--HCCCee
Confidence 3455666666665 79999999999999999 999999997 345554
No 139
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.96 E-value=6.3 Score=29.85 Aligned_cols=50 Identities=10% Similarity=0.170 Sum_probs=42.1
Q ss_pred EEcHHHHHHHHhhhC--CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 249 IVSTYQAATLLLFNT--SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~--~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
.++..|..|+-+..+ .+.++..+|...++++...+.++|..|.. .+++..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~ 85 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 85 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEE
Confidence 567899999988876 56899999999999999999999999974 356554
No 140
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=65.70 E-value=7.1 Score=29.88 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhCCCCcCHHHHHHHc-CCCHHHHHHHHHhhhcccceeeecC
Q 014910 252 TYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 252 ~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+...||.... .+..++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 14 ~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 14 KWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp TTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34555665554 4679999999999 999999999999997 45788754
No 141
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=65.68 E-value=8.2 Score=32.02 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
....||..+.+...+|+.+|++.+|++...+.+.+..|.. .+++.
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~ 48 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIR 48 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCee
Confidence 3456788888888999999999999999999999999963 45655
No 142
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=65.25 E-value=9.6 Score=26.97 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=32.1
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
+|.-|-.|+.++ ...+|..||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4578999999999999999988877654
No 143
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=65.24 E-value=2.2 Score=36.03 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhhCCC---CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSD---RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~---~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++..|..||..+...+ .+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEec
Confidence 5778999988776544 39999999999999999999999997 45777764
No 144
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=65.00 E-value=5.3 Score=30.91 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=38.2
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHc-CCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+.+...||....+ +.+++.+|++.+ |++...+.+.|..|. +.+++.+.
T Consensus 21 ~~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 21 GKWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp STTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 4456667765544 679999999999 999999999999997 45787754
No 145
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=64.68 E-value=5.3 Score=32.97 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=39.4
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++....||.++. ...+|+.+|++.+|++...+-++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 456777887776 4679999999999999999999999996 45777653
No 146
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=64.40 E-value=8.1 Score=28.92 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.0
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.++.-|..||.++ ...+|..||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677788888776 4578999999999999999998887764
No 147
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=63.85 E-value=9.6 Score=27.53 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=32.4
Q ss_pred HHHHhhhCCCCcCHHHHHHHcCC-CHHHHHHHHHhhhc
Q 014910 256 ATLLLFNTSDRLSYSEIMTQLNL-THDDLVRLLHSLSC 292 (416)
Q Consensus 256 ~iLl~Fn~~~~~t~~ei~~~~~i-~~~~l~~~L~~L~~ 292 (416)
.|--++|+...+|+.+|.+.+|+ +..++..++..|..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 45567788789999999999999 99999999999974
No 148
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=63.43 E-value=6.1 Score=29.81 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=35.5
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++....||..+-..++.++.||++.+|++...+-++|..|. .. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhh
Confidence 45566677333334679999999999999999999999996 34 5543
No 149
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=63.33 E-value=9.8 Score=29.39 Aligned_cols=49 Identities=10% Similarity=0.248 Sum_probs=38.0
Q ss_pred EcHHHHHHHHhhhCCCCcC--HHHHHHHc-CCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLS--YSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t--~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
...+...||....+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 25 ~~~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 25 GKKYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp HSTTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cCccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34456677766653 4555 99999999 999999999999997 46788764
No 150
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=62.81 E-value=7.4 Score=30.36 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=41.8
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHc--CCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQL--NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~--~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++...-.||.++.+...+|+.+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 455677788888776799999999999 999999999999997 46788753
No 151
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=62.62 E-value=3.6 Score=32.62 Aligned_cols=58 Identities=14% Similarity=0.320 Sum_probs=41.6
Q ss_pred hhceeeeehhccCCC--CChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCC--ceEec
Q 014910 350 AIDAALVRIMKSRKV--LGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPN--MFRYL 415 (416)
Q Consensus 350 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~--~y~Yi 415 (416)
..+..|.+++..... ++..+|-..+ ..+...+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 335666777776655 8888887654 258888999999999999999853 3333 45554
No 152
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=62.00 E-value=3.7 Score=30.11 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=39.5
Q ss_pred eeeehhccCC---CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 354 ALVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 354 ~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|...|+... .++..+|-.++ ..+...|.++|..|.+.|+|.+.+..+..|
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~L--------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 3566777777 78888877653 367789999999999999999877665444
No 153
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=61.89 E-value=4.7 Score=32.22 Aligned_cols=26 Identities=4% Similarity=0.129 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHhhhhhccccccC
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+...+...|.++|..|+++|||+|..
T Consensus 60 ~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 60 RMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56678999999999999999999954
No 154
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=61.72 E-value=7.2 Score=35.21 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=36.7
Q ss_pred HHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 256 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 256 ~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.||.+|.. ...+|+.||++.+|++...+.+.|..|. ..+++.+.
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~--~~G~v~~~ 71 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC--ARSVLTSR 71 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEC
Confidence 46777764 4689999999999999999999999997 45778764
No 155
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=61.47 E-value=9.1 Score=34.65 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=42.1
Q ss_pred HHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 256 ATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 256 ~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
.||.+|.. ...+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~--~~G~v~~~--------~~~Y~Lg~~ 78 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLV--ELGYVATD--------GSAFWLTPR 78 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEES--------SSEEEECGG
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec--------CCEEEEcHH
Confidence 57778864 4689999999999999999999999997 35777653 356777544
No 156
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=61.24 E-value=7.9 Score=29.62 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHhh-hCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 256 ATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 256 ~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.||..+ ...+.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 344333 4455799999999999999999999999973 4676543
No 157
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=61.22 E-value=10 Score=29.65 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=49.6
Q ss_pred hhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 347 RRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 347 r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
++-.++.+|..++. .+.+.--+|...+.+...+.+.++...+-..+..|.++|||++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34567888888886 47788889999998877667889999999999999999999986
No 158
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=60.80 E-value=5 Score=29.94 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=35.5
Q ss_pred EcHHHHHHHHhhhC-CCC---cCHHHHHHHcCCCHHHHHHHHHhhhcccceee
Q 014910 250 VSTYQAATLLLFNT-SDR---LSYSEIMTQLNLTHDDLVRLLHSLSCAKYKIL 298 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~-~~~---~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL 298 (416)
++.-+..||+.+.. .+. +|..+|++.++++...+.+.|..|. +.+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFE--EAKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HTTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCcCc
Confidence 35566667765532 234 9999999999999999999999996 34555
No 159
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=60.43 E-value=13 Score=24.46 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=35.6
Q ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHH
Q 014910 114 KLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 157 (416)
Q Consensus 114 ~La~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~Ml~D~~ 157 (416)
-+.+|++.......+.-..|+..|+..-|........+|+.-+-
T Consensus 5 sViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 5 SVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 46788888777778888899999998888888888888887553
No 160
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=59.53 E-value=11 Score=29.99 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=37.4
Q ss_pred EEcHHHHHHHHhh----hCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 249 IVSTYQAATLLLF----NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 249 ~~s~~Q~~iLl~F----n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
.++..|..+|..+ .....+|..+|++.+|++...+.+.|..|. +.+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le--~~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE--EKGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH--HCCCEEe
Confidence 4555565555433 245689999999999999999999999997 3467764
No 161
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=59.48 E-value=3 Score=32.60 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=40.4
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
|..++...+.++..+|...+-.. ...+...+...|+.|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 33444445678888888876542 235778899999999999999998754 455554
No 162
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=59.17 E-value=11 Score=33.92 Aligned_cols=54 Identities=20% Similarity=0.355 Sum_probs=42.3
Q ss_pred HHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccC
Q 014910 255 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSK 318 (416)
Q Consensus 255 ~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~ 318 (416)
..||..|.. ...+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~--~~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ--KLGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC--------CCEEEEcHH
Confidence 357778875 3579999999999999999999999997 35777653 256777544
No 163
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=59.04 E-value=8.5 Score=27.69 Aligned_cols=43 Identities=5% Similarity=0.029 Sum_probs=32.4
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
|.+.+...+.++..||-.. +..+...+.+.|..|.+.|+|++.
T Consensus 5 Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4455555566777776654 446888899999999999999954
No 164
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=58.92 E-value=13 Score=31.83 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=39.8
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+..+..||.++. .+.+|..+|++.+|++...+.+.|..|. +.+++...
T Consensus 18 ~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3566777887776 4689999999999999999999999996 45777654
No 165
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=58.48 E-value=7.1 Score=31.29 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=32.8
Q ss_pred hhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 260 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 260 ~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~ 55 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYE 55 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34445689999999999999999999999997 45777653
No 166
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=58.43 E-value=10 Score=32.68 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=35.9
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
-|-.||.+.+++..+|++||++.++++...+++-|.-|.
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~ 51 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLN 51 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999885
No 167
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=57.77 E-value=10 Score=30.27 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=38.1
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHc-CCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+.+...||..+. .+.+++.||++.+ |++...+-+.|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 445666666555 4679999999999 799999999999997 45788754
No 168
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.80 E-value=20 Score=24.62 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=29.5
Q ss_pred EcHHHHHHHHhhh---CCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 250 VSTYQAATLLLFN---TSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn---~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
++.-|-.|+.+.- ....+|++||++.+|++...+...+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555555554432 3457899999999999999888776554
No 169
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=56.53 E-value=30 Score=22.37 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHH
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLH 288 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~ 288 (416)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999887663
No 170
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.12 E-value=19 Score=22.20 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 255 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 255 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
..|+.++.+ .+|..+|++.+|++...+.+.+...
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 345555543 5799999999999999998877543
No 171
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=55.79 E-value=13 Score=32.22 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=39.6
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
++.+..||.++. .+.+++.+|++.+|++...+.++|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 556777887765 4579999999999999999999999997 45777654
No 172
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=55.78 E-value=36 Score=24.31 Aligned_cols=58 Identities=5% Similarity=0.200 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHhhccCCh-hHHHHHHHHHHHHHHcCCCC
Q 014910 63 SELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDRS 124 (416)
Q Consensus 63 ~e~La~y~d~~l~~~~~~~~~~~e~~~~l~~i~~lf~~l~~K-D~F~~~Y~~~La~RLL~~~s 124 (416)
-++++++++.++.+ +.+++++...++.+-..+..+... +.|+..|-..+.+-|+...+
T Consensus 7 C~~iv~~ve~~l~~----~~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 7 CRKIIQKLEDMVGP----QPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHCS----SCCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 46888999999985 347899999999998888765444 78999999999998887654
No 173
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=55.46 E-value=6.7 Score=28.31 Aligned_cols=50 Identities=12% Similarity=0.297 Sum_probs=39.0
Q ss_pred eeehhccCC---CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 355 LVRIMKSRK---VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 355 IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
|..+|+... .++..+|-..+ ..+...|.+.|..|.+.|+|++.++.+..|
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 556777777 78887776643 367788999999999999999987666544
No 174
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=55.45 E-value=8.6 Score=28.39 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=32.0
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
++.-|..||.++ ...+|..||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777666 3578999999999999999998887664
No 175
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=54.89 E-value=15 Score=29.43 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=38.8
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHc-CCCHHHHHHHHHhhhcccceeeecC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
..+.+.||.... .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 25 ~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 25 GKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 345667776655 5689999999999 999999999999997 45788764
No 176
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=54.87 E-value=12 Score=24.94 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=27.1
Q ss_pred HHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 255 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 255 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
..|+.++- .++|..||++.+|++...+...+....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34454443 367999999999999999998887764
No 177
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=54.42 E-value=22 Score=28.89 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
+.+-..||.... .+..++.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 23 ~~w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 23 DGWSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp SSSHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CchHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 345555665444 3578999999999999999999999997 468887653
No 178
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=53.15 E-value=12 Score=29.92 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=40.9
Q ss_pred ceeeeehhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 352 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 352 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
+..|++++-. ...++..+|...+... -..+...|...|+.|.++|||+|..+ ...+.|.
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~ 70 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYA 70 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEEE
Confidence 4445566655 4678888887765321 23578889999999999999999875 4466663
No 179
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=52.77 E-value=9.4 Score=27.57 Aligned_cols=37 Identities=8% Similarity=0.243 Sum_probs=31.1
Q ss_pred HHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 255 AATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 255 ~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
=.||-.+.+ ...++..||++.+|++..++.++|..|-
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356665654 4689999999999999999999999995
No 180
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=52.08 E-value=12 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.295 Sum_probs=35.9
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHc-CCCHHHHHHHHHhhhcccceeeecC
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQL-NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~-~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+-..||.... .+.+++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 26 ~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 26 WTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp SHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 4445665554 4679999999999 599999999999997 45787654
No 181
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=51.19 E-value=22 Score=25.85 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=28.2
Q ss_pred cHHHHHHHHh-h--hCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 251 STYQAATLLL-F--NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 251 s~~Q~~iLl~-F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
+.-|-.|+.+ | .+...+|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555543 3 33357999999999999998887766543
No 182
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=50.46 E-value=7.7 Score=28.09 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCC
Q 014910 363 KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENP 409 (416)
Q Consensus 363 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 409 (416)
...+..||... |..+...|..-|..|.++|||+|+.+-+
T Consensus 23 ~~psv~EIa~~--------lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 23 APVKTRDIADA--------AGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp SCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 44555555443 3457777999999999999999987543
No 183
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=50.33 E-value=24 Score=24.59 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=27.4
Q ss_pred cHHHHHHHHh-h--hCCCCcCHHHHHHHcCCCHHHHHHHHHh
Q 014910 251 STYQAATLLL-F--NTSDRLSYSEIMTQLNLTHDDLVRLLHS 289 (416)
Q Consensus 251 s~~Q~~iLl~-F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~ 289 (416)
+.-|-.|+.+ | .+...+|++||++.+|++...+...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555533 3 2235789999999999999988776544
No 184
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=49.66 E-value=19 Score=27.22 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=33.1
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+|.-|..||.++- ..+|..||++.+|++...++..+..+.
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35677777777664 478999999999999999988887764
No 185
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.46 E-value=30 Score=27.98 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=47.8
Q ss_pred EEEcHHHHHHHHhhhC-CCCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 014910 248 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 317 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~ 317 (416)
+.+|.....||..+.+ ...+|.+||.+.+ +++...+-++|..|. ..+++.+...+. ....|.++.
T Consensus 18 ~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~~---~~~~Y~~~~ 88 (145)
T 2fe3_A 18 VRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR--ESGLVKELTYGD---ASSRFDFVT 88 (145)
T ss_dssp CCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH--HTTSEEEECCTT---SCCEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH--HCCCEEEEeeCC---CceEEECCC
Confidence 3567778888877654 4579999999998 899999999999997 457877643211 234577664
No 186
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=49.12 E-value=15 Score=32.56 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=35.4
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.-+.|+.+.. +++.|.++|++.+|++..++..+|..|. +.+++.+.
T Consensus 166 ~~~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 166 QLAILHYLLL-NGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 3344444444 4688999999999999999999999996 56777543
No 187
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=47.26 E-value=15 Score=27.44 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=26.3
Q ss_pred CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc
Q 014910 362 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 404 (416)
Q Consensus 362 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 404 (416)
.+.+...+|-. ....+...+..+|..|.++|||+|
T Consensus 34 ~~gi~qkeLa~--------~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 34 NKGIWSRDVRY--------KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp TTCEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 33555555554 345678889999999999999994
No 188
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=47.22 E-value=12 Score=27.59 Aligned_cols=52 Identities=4% Similarity=0.122 Sum_probs=38.5
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNM 411 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 411 (416)
+..|.+.+.....++..+|...+ ..+...+-..|..|.+.|+|++..+.+..
T Consensus 26 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tvs~~l~~L~~~glv~~~~~~r~~ 77 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRIT--------GLSASATSQHLARMRDEGLIDSQRDAQRI 77 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSCE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCEE
Confidence 44566667666678877776643 36788899999999999999987654433
No 189
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=47.08 E-value=11 Score=29.74 Aligned_cols=28 Identities=14% Similarity=0.320 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHhhhhhcccccc--CCCC
Q 014910 382 FKPDIKAIKKRMEDLITRDYLERD--KENP 409 (416)
Q Consensus 382 F~~~~~~ik~~Ie~Liereyi~r~--~~~~ 409 (416)
+..+.+.+-..|..|.++|||+|. +.|+
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 446778899999999999999994 4444
No 190
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=46.74 E-value=26 Score=26.49 Aligned_cols=39 Identities=15% Similarity=0.346 Sum_probs=27.0
Q ss_pred EcHHHHHHH-Hhh--hCCCCcCHHHHHHHcCCCHHHHHHHHH
Q 014910 250 VSTYQAATL-LLF--NTSDRLSYSEIMTQLNLTHDDLVRLLH 288 (416)
Q Consensus 250 ~s~~Q~~iL-l~F--n~~~~~t~~ei~~~~~i~~~~l~~~L~ 288 (416)
++.-|-.|+ +.| ++...+|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444444 444 234689999999999999988776543
No 191
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=46.03 E-value=13 Score=30.31 Aligned_cols=57 Identities=5% Similarity=0.050 Sum_probs=47.4
Q ss_pred hhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 349 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 349 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
..++.+|..++.. +.+.-.+|..++.+.....+.++...+-..|..|.++|||++..
T Consensus 40 g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 40 GYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 4567777787854 67888999999887776667899999999999999999999863
No 192
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.29 E-value=29 Score=25.35 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=28.1
Q ss_pred EcHHHHHHHHh-hhCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 250 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 250 ~s~~Q~~iLl~-Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
++.-|-.||.+ +- ..+|+.||++.+|++...++..+..-
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555544 43 46899999999999998887766543
No 193
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=45.26 E-value=33 Score=23.17 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=28.2
Q ss_pred EcHHHHHHHHh-hhCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 250 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 250 ~s~~Q~~iLl~-Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
++.-|-.|+.+ +- ..+|.+||++.+|++...+...+..-
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555556644 43 36899999999999998887766554
No 194
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=45.02 E-value=11 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.309 Sum_probs=39.7
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+|..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 455688899999999998887754 47889999999999999999974
No 195
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=44.44 E-value=25 Score=28.03 Aligned_cols=64 Identities=14% Similarity=0.277 Sum_probs=47.0
Q ss_pred EEEcHHHHHHHHhhhCC--CCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEc
Q 014910 248 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 316 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN 316 (416)
+.+|.....||..+.+. ..+|.+||.+.+ +++...+-++|..|. ..+++.+...+ .....|.++
T Consensus 14 ~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~~~~~Y~~~ 84 (136)
T 1mzb_A 14 LKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE--AAGLVVRHNFD---GGHAVFELA 84 (136)
T ss_dssp CCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEECSS---SSSCEEEES
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HCCcEEEEEeC---CCceEEEeC
Confidence 35677778888777653 579999999998 899999999999997 45777654311 122457764
No 196
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=43.71 E-value=20 Score=32.48 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=30.4
Q ss_pred HHHHHHHhh-hCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 253 YQAATLLLF-NTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 253 ~Q~~iLl~F-n~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
+...|+-.+ +....+|+++|++.|||..+++..+|+.|
T Consensus 194 W~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 194 WSDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 444555433 34468999999999999999999999998
No 197
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=43.02 E-value=23 Score=32.22 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=26.6
Q ss_pred HHHHHHHh-hh-CCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 253 YQAATLLL-FN-TSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 253 ~Q~~iLl~-Fn-~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
+...|+.. .+ ..+.+|+++|++.|||..+++..+|+.|
T Consensus 199 W~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 199 WKSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 44455532 33 3458999999999999999999999998
No 198
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=42.38 E-value=76 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+..|..||-+......+|..+++..+|.+....+..|..+. +-+++...
T Consensus 152 ~~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 152 EEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp GGGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 346899998877878899999999999999999999998886 45777765
No 199
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=42.34 E-value=23 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=24.1
Q ss_pred CcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 266 RLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 266 ~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
.+|+++|++.|||..+++..+|+.|
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 7999999999999999999999998
No 200
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=41.95 E-value=40 Score=23.95 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHhhc-cCCh-hHHHHHHHHHHHHHHcCCCC
Q 014910 63 SELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAY-ISDK-DLFAEFYRKKLARRLLFDRS 124 (416)
Q Consensus 63 ~e~La~y~d~~l~~~~~~~~~~~e~~~~l~~i~~lf~~-l~~K-D~F~~~Y~~~La~RLL~~~s 124 (416)
-+++.+.++.++ ++ .+++++...|+.+...+.. +.+. +.|+..|...+..-|+...+
T Consensus 7 C~~~v~~le~~l-~n----~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 7 CLTIVQKLKKMV-DK----PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHC-SS----CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-cc----cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 467788888888 52 3788999999888888765 5544 78999999999999988754
No 201
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=41.32 E-value=28 Score=32.35 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
.+..||.++++...+|.++|++.+|++...+.+.|..|..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4566777778878899999999999999999999998863
No 202
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=39.72 E-value=16 Score=27.47 Aligned_cols=40 Identities=20% Similarity=0.275 Sum_probs=32.6
Q ss_pred hhhCCCCc-CHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 260 LFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 260 ~Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+...+.+ |..+|++.+|++...+.++|..|. ..+++...
T Consensus 28 ~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~--~~Gli~~~ 68 (102)
T 1v4r_A 28 ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLK--SEGLVSSR 68 (102)
T ss_dssp SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTT--TSSCCEEE
T ss_pred CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 34455677 999999999999999999999996 45777654
No 203
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=39.46 E-value=42 Score=24.99 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
-+.||..... + ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3556666664 3 8999999999999999999999997 45777653
No 204
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=39.20 E-value=30 Score=29.25 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=32.5
Q ss_pred HHHHHHHhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 253 YQAATLLLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 253 ~Q~~iLl~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
-+..||.++.+ ...+|..+|++.+|++...+.+.|..|..
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34556766664 35699999999999999999999999964
No 205
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.00 E-value=34 Score=27.84 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=40.9
Q ss_pred EEEcHHHHHHHHhhhC-CCCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecC
Q 014910 248 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+.+|.....||..+.+ ...+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 23 ~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 80 (150)
T 2xig_A 23 LKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE--KENFISVL 80 (150)
T ss_dssp --CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCcEEEE
Confidence 4667778888877754 4589999999988 799999999999997 45777654
No 206
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=38.44 E-value=8.9 Score=30.90 Aligned_cols=51 Identities=12% Similarity=0.299 Sum_probs=33.9
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc----cCCCCCc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER----DKENPNM 411 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r----~~~~~~~ 411 (416)
+..|...+ ..+.++..+|-..+ ..+.+.+-..|..|.++|||+| ++.|+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 44455666 67788888877653 3566779999999999999998 6666543
No 207
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.33 E-value=36 Score=28.92 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=37.4
Q ss_pred EcHHHHHHHHhhhC-----CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 250 VSTYQAATLLLFNT-----SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~-----~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+|.-|..||....+ ....|+.||++.+|++...+.+.|..|. +.+++.+.
T Consensus 3 lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le--~~G~i~~~ 57 (196)
T 3k2z_A 3 LTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALE--KKGYIERK 57 (196)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHH--HCCCEEec
Confidence 45667777755432 2368999999999999999999999996 34566554
No 208
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=38.23 E-value=16 Score=29.43 Aligned_cols=48 Identities=6% Similarity=0.064 Sum_probs=36.3
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
-+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34456666666677777777653 3468888999999999999999864
No 209
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.85 E-value=36 Score=26.89 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=40.1
Q ss_pred EEcHHHHHHHHhhh-CCCCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecC
Q 014910 249 IVSTYQAATLLLFN-TSDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn-~~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+|..-..||..|. ....+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 8 r~T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~~ 64 (131)
T 2o03_A 8 RSTRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMA--SSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCEEEE
Confidence 34556677887665 44589999999998 899999999999997 45777654
No 210
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=37.82 E-value=15 Score=27.38 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=36.0
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+...+.++..+|...+ ..+...+-..|..|.++|||++..
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44555666666678877776643 468888999999999999999964
No 211
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=37.62 E-value=7.7 Score=28.80 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=34.4
Q ss_pred hhccCC-CCChhHHHHHHHHHhccCCCCChHH-HHHHHHhhhhhccccccCCCCCce
Q 014910 358 IMKSRK-VLGHQQLVSECVEQLSRMFKPDIKA-IKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 358 imK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~-ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.+.... .++..+|-..+ ..+... +-..|..|.++|||++++.|+...
T Consensus 23 ~l~~~~~~~t~~eLa~~l--------~is~~t~vs~~l~~Le~~Glv~~~~~drR~~ 71 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKAS--------GVSEKTFFMGLKDRLIRAGLVKEETLSYRVK 71 (95)
T ss_dssp HHHHTTCCCCHHHHHHHH--------CCCHHHHHTTHHHHHHHTTSEEEEEEETTEE
T ss_pred HHHhcCCCCCHHHHHHHH--------CCCchHHHHHHHHHHHHCCCeecCCCCCCeE
Confidence 334444 68877776643 357788 999999999999999877765543
No 212
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=37.55 E-value=34 Score=29.67 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 257 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 257 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
|+.+-.+...++..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~ 53 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKD 53 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEe
Confidence 34444456789999999999999999999999997 45777764
No 213
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=37.42 E-value=40 Score=25.45 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=36.5
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 414 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 414 (416)
|.+.+. .+.++..+|...+. ..+...+-+.|..|.++|+|+|.. .|+....|
T Consensus 19 IL~~L~-~~~~~~~eLa~~l~-------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRLMP-------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHHCT-------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHHhc-------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444454 56788877776420 468888999999999999999864 34444444
No 214
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=36.82 E-value=52 Score=31.36 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCC---CCCCCCeEEEccCCC
Q 014910 255 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTK---TISQSDHFEFNSKFT 320 (416)
Q Consensus 255 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~---~i~~~~~~~lN~~f~ 320 (416)
..||.++..+..+|-.||++.||++...+.+.+..|.. .+++...+... .=.+...+.+|.++.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~--~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE--AHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 45777777778999999999999999999999999974 46666532211 112344577776643
No 215
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=36.26 E-value=30 Score=28.22 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=42.0
Q ss_pred EEEcHHHHHHHHhhhCC--CCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecC
Q 014910 248 LIVSTYQAATLLLFNTS--DRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~--~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+.+|.....||..+.+. ..+|.+||.+.+ +++...+-++|..|. ..+++.+.
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~ 71 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFD--DAGIVTRH 71 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HCCcEEEE
Confidence 45677788888877654 579999999988 799999999999997 45777654
No 216
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.16 E-value=22 Score=27.70 Aligned_cols=43 Identities=5% Similarity=0.210 Sum_probs=29.9
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
|...+...+.++..+|-.. +..+...+-..|..|.++|||+|.
T Consensus 38 iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIEN--------MGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHH--------CSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCcCHHHHHHH--------HCCChhHHHHHHHHHHHCCCeeec
Confidence 3444444555666665442 445677799999999999999984
No 217
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=35.94 E-value=13 Score=29.57 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=31.6
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
|...+.... ++..+|-..+ ..+.+.+-..|..|.++|||+|..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344445555 8887777653 367888999999999999999865
No 218
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=35.85 E-value=19 Score=28.83 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.2
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 404 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 404 (416)
+..|...+...+.++..+|-..+ ..+...+-..|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34455555556667777766643 3577889999999999999999
No 219
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=35.82 E-value=28 Score=27.96 Aligned_cols=57 Identities=7% Similarity=0.057 Sum_probs=41.2
Q ss_pred eeehhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 355 LVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 355 IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
|..+|.. .+-++.+||...+.+.. -.++...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 3444444 45799999999887542 346889999999999999999997543333344
No 220
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=35.75 E-value=16 Score=27.00 Aligned_cols=29 Identities=0% Similarity=-0.111 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCC
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPN 410 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 410 (416)
.+..+...+-..|..|.++||| +++.|+.
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 3557888899999999999999 5555544
No 221
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.25 E-value=27 Score=27.46 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=34.8
Q ss_pred ceeeeehh-ccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+ .....++..+|...+ ..+...+-..|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 34455555 566677777776643 367888999999999999999964
No 222
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=35.07 E-value=35 Score=27.52 Aligned_cols=40 Identities=10% Similarity=0.245 Sum_probs=31.7
Q ss_pred hhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 260 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 260 ~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.....+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 48 ~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~--~Glv~r~ 87 (155)
T 2h09_A 48 LIREVGEARQVDMAARLGVSQPTVAKMLKRLAT--MGLIEMI 87 (155)
T ss_dssp HHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 333445789999999999999999999999973 3666543
No 223
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=35.04 E-value=38 Score=27.05 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.7
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
++.-|-.|+..+ ..++|..||++.+|++...++..+..-
T Consensus 110 L~~~~r~v~~~~--~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 110 FSKFEKEVLTYL--IRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 455566666643 357899999999999998887766543
No 224
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=34.67 E-value=16 Score=29.17 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.3
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|..
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 34566677667778887777654 368889999999999999998753
No 225
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=34.04 E-value=20 Score=31.86 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 251 STYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 251 s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
++....||.++.+ +.+|+.+|++.+|++...+.++|..|. +.+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~ 57 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQS 57 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 3455667766664 679999999999999999999999997 4577765
No 226
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=33.80 E-value=30 Score=25.49 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=37.7
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|++.+.. +.++..+|...+ ..+...+-..+..|.+.|+|++..+.+..|
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~ 76 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVY 76 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCE
T ss_pred HHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEE
Confidence 46666765 778887777654 357788999999999999999876554444
No 227
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=33.70 E-value=51 Score=33.06 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=73.0
Q ss_pred CcCHHHHHHHc----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEccCCCCCcceeeecCCCchhhhhHHH
Q 014910 266 RLSYSEIMTQL----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNSKFTDRMRRIKIPLPPVDERKKIVE 341 (416)
Q Consensus 266 ~~t~~ei~~~~----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~~f~~~~~ki~i~~~~~~e~~~~~~ 341 (416)
++++.+|.+.+ +++.+.+.++|.-|.....+++.+.+++ .++.|.||.. .-... =....-.
T Consensus 287 ~is~~~I~~~l~~~~~l~~~~l~~~L~lL~~~~~~fv~~~g~~----g~g~y~V~~~--~~~~~---------lr~~~ie 351 (534)
T 2xub_A 287 PLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGDS----GGGMYVINLH--KALAS---------LATATLE 351 (534)
T ss_dssp CEEHHHHHHTSCTTCCCCHHHHHHHHHHHHSCTTCCEEECCCC----SSCEEEEBHH--HHHHH---------HHHHHHH
T ss_pred cccHHHHHHHcCCcccccHHHHHHHHHHHhCCcHHhhhccccC----CCceEEEeHH--HHHHH---------HHHHHHH
Confidence 68889998876 5667889999998876556777765431 3567877543 10000 0111223
Q ss_pred hHHHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 342 DVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 342 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
.+..+|--..=+-|+|+|..++.++-++|-+.+. ....++++.+-.|.+.||+.-.
T Consensus 352 ~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~--------i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 352 SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAM--------IPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHC--------SCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhC--------CCHHHHHHHHHHHHHCCCeEEE
Confidence 3444443333345899998888888877766542 4668899999999999998764
No 228
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.54 E-value=46 Score=20.59 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=23.4
Q ss_pred HHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHh
Q 014910 257 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 289 (416)
Q Consensus 257 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~ 289 (416)
|+.++.+ .+|..+|++.+|++...+.+.+..
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3334443 389999999999999988876643
No 229
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=33.43 E-value=26 Score=27.46 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=32.7
Q ss_pred eeeeehhccCC--CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 353 AALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 353 A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
..|...+.... .++..+|... +..+...+-..|..|.++|||+|..
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESE--------FSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHH--------HCCCcchHHHHHHHHHHCCCEEeeC
Confidence 33444454444 6777776554 2357888999999999999999854
No 230
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=33.40 E-value=22 Score=28.15 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc--CCCCCc
Q 014910 362 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD--KENPNM 411 (416)
Q Consensus 362 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~--~~~~~~ 411 (416)
.+.++..+|...+ ..+.+.+-..+..|.++|||+|. ++|+..
T Consensus 39 ~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 39 DKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp SSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred CCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 4567777776643 35778899999999999999997 344443
No 231
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=32.68 E-value=22 Score=28.79 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=35.9
Q ss_pred eeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 353 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 353 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
-.|.+.+.....++..+|-.. +..+...+.+++..|.++|+|+|.
T Consensus 12 ~~il~~L~~~~~~s~~ela~~--------lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADI--------LNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHH--------TTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 356677777778888877664 457889999999999999999863
No 232
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=32.62 E-value=18 Score=28.24 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=34.1
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|-..+ ..+...+...|..|.++|||+|..
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 33444555556677777666643 367888999999999999999953
No 233
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.55 E-value=16 Score=29.72 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=39.2
Q ss_pred eehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 356 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 356 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
.++|...+-++.++|...+.+.. -..+...|=+.|+.|.+.|.|.+-..+.+...|
T Consensus 25 l~~l~~~~h~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 25 LEAVDTLEHATPDDILGEVRKTA---SGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp HHHHHHHSSBCHHHHHHHHHTTC---TTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHhcCCCCHHHHHHHHHhhC---CCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 33444434788888888876532 246889999999999999999986543333334
No 234
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=32.42 E-value=27 Score=26.50 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCc-CHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 256 ATLLLFNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 256 ~iLl~Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.|+-.+...+.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 32 ~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~--~GlI~~~ 76 (102)
T 2b0l_A 32 HIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLES--AGVIESR 76 (102)
T ss_dssp HHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 344445555566 9999999999999999999999973 4677654
No 235
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=32.35 E-value=26 Score=31.83 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=25.9
Q ss_pred HHHHHHHhhh-CCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 253 YQAATLLLFN-TSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 253 ~Q~~iLl~Fn-~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
+-..|+-.+. ..+.+|++||++.|||..+++..+|+.|
T Consensus 194 W~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 194 WSWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 4445554443 3358999999999999999999999998
No 236
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=32.27 E-value=33 Score=27.44 Aligned_cols=46 Identities=7% Similarity=0.049 Sum_probs=32.9
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+..|...+.....++..+|... +..+...+-..|..|.++|||+|.
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEF--------LSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH--------TTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 3344445555556776666553 446888899999999999999985
No 237
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=32.21 E-value=58 Score=28.56 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=32.9
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
...+|.++-+....++++|+..+|++.+++.+.|..+-
T Consensus 24 ~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 24 LVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 34566677788899999999999999999999999884
No 238
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=32.03 E-value=52 Score=30.84 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=32.5
Q ss_pred HhhhC-CCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 259 LLFNT-SDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 259 l~Fn~-~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
..+.+ ...+|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 42 d~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~--~g~l~~ 82 (363)
T 3dp7_A 42 QLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLT--IGTILL 82 (363)
T ss_dssp HHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred HHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCeEe
Confidence 33444 46899999999999999999999999974 478864
No 239
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.91 E-value=42 Score=26.69 Aligned_cols=51 Identities=6% Similarity=0.160 Sum_probs=38.9
Q ss_pred eeeehhcc-C-CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 014910 354 ALVRIMKS-R-KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 407 (416)
Q Consensus 354 ~IVRimK~-~-k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 407 (416)
+|..++.. . +-++.+||...+.+.. -..+...|=+.|+.|.+.|+|.+-..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 34555554 3 5799999999887642 24688899999999999999998764
No 240
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=31.66 E-value=60 Score=30.25 Aligned_cols=43 Identities=12% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 317 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~ 317 (416)
...|++||++.+|++...+.+.|..|+. .+++... ++.|..+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~--------~~~y~~t~ 105 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLE--------DGKWSLTE 105 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECH
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEee--------CCeEecCH
Confidence 6799999999999999999999999974 5788753 24677663
No 241
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=31.42 E-value=24 Score=28.45 Aligned_cols=46 Identities=11% Similarity=0.209 Sum_probs=36.7
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|.
T Consensus 5 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEE
Confidence 34567777777788888877653 36888899999999999999983
No 242
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=31.38 E-value=37 Score=25.35 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=26.8
Q ss_pred HHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHh
Q 014910 255 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 289 (416)
Q Consensus 255 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~ 289 (416)
-.|+.+.+... +|+.||++.+|++...+.+.|..
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 34555555544 89999999999999999998864
No 243
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=31.36 E-value=27 Score=28.61 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=31.1
Q ss_pred eeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 353 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 353 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
..|...+.....++..+|-.. ...+...+-..|..|.++|||+|.
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATL--------LGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHH--------hCCCHHHHHHHHHHHHHCCCEEec
Confidence 334444444455665555443 346788899999999999999994
No 244
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=31.30 E-value=68 Score=24.59 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=28.6
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
++.-|-.|+.+.- ...+|..||++.+|++...+...+...
T Consensus 26 L~~~~r~vl~l~~-~~g~s~~EIA~~lgiS~~tV~~~l~ra 65 (113)
T 1xsv_A 26 LTNKQRNYLELFY-LEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113)
T ss_dssp SCHHHHHHHHHHH-TSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555555665432 236899999999999999888776554
No 245
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=31.09 E-value=71 Score=23.25 Aligned_cols=39 Identities=8% Similarity=0.153 Sum_probs=31.6
Q ss_pred HHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 254 QAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 254 Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
+-.++....-+..++++.|++.++++.+.+...|..|+.
T Consensus 18 E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~ 56 (84)
T 1ufm_A 18 EHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMIT 56 (84)
T ss_dssp HHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 334444555678999999999999999999999988864
No 246
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.85 E-value=42 Score=29.88 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=32.7
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+|.-|-.|+.+. ..++|.+||++.+|++...++..+....
T Consensus 197 ~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 197 ILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp SSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4566777777766 3688999999999999999988876653
No 247
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=30.46 E-value=66 Score=29.50 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=34.7
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEc
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 316 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN 316 (416)
...|++||++.+|+++..+.+.|..|+. .+++... +++.|..+
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~--~g~l~~~-------~~~~y~~t 82 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVA--FEIFQGD-------TRDGYANT 82 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE-------TTTEEEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCceEec-------CCCeEecC
Confidence 5799999999999999999999999974 5788753 23466665
No 248
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=30.37 E-value=96 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=32.0
Q ss_pred HHHHHHhh--hCCCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 254 QAATLLLF--NTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 254 Q~~iLl~F--n~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
.-.||.++ ++...+|.++|++.+|++...+.++++.|-.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~ 45 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL 45 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34466555 5566899999999999999999999999963
No 249
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=30.24 E-value=40 Score=26.43 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=33.2
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+. .+.++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 39 ~~~iL~~l~-~~~~~~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 39 DFLVLRATS-DGPKTMAYLANR--------YFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHHH--------hCCCchhHHHHHHHHHHCCCEEeec
Confidence 333444455 666777666553 4468888999999999999999853
No 250
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=30.23 E-value=26 Score=29.46 Aligned_cols=55 Identities=4% Similarity=0.158 Sum_probs=43.9
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
++-+|...+.. +.++-.+|...+.......+.++...|-..+..|.+.|+|++..
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 44456666664 78899999988876665556899999999999999999999864
No 251
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=30.08 E-value=20 Score=28.81 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=35.0
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 9 ~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKI--------KLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 466667667778888777653 46888999999999999999874
No 252
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=30.00 E-value=15 Score=29.79 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=34.3
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|-..+ ..+...+-..|..|.++|||+|..
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDRT--------AMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeec
Confidence 44556666666777777776542 367788999999999999999954
No 253
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=29.65 E-value=34 Score=24.99 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=34.8
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCC
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPN 410 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 410 (416)
|..+|+... ++..+|-. .+..+...|.++|..|.+.|+|.+.+..|-
T Consensus 22 IL~lL~~~g-~sa~eLAk--------~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 22 AIKTIGIEG-ATAAQLTR--------QLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHSSST-EEHHHHHH--------HSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHcC-CCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 445677544 55555444 356888999999999999999999876653
No 254
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=29.64 E-value=32 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.335 Sum_probs=30.5
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
|...+.....++..+|... ...+.+.+-..|..|.++|||+|.
T Consensus 39 iL~~l~~~~~~~~~~la~~--------l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKV--------LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCHHHHHHH--------HCCChHHHHHHHHHHHHCCCEEec
Confidence 3444444455666666532 346888899999999999999985
No 255
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=29.51 E-value=53 Score=30.09 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=34.3
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEc
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 316 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN 316 (416)
+..|++||++.+|++...+.+.|..|+. .+++... ++.|..+
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~~--------~~~y~~t 79 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTKQ--------AEGYRLT 79 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEEC
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEec--------CCEEecC
Confidence 6899999999999999999999999974 5788642 3566665
No 256
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=29.49 E-value=34 Score=24.47 Aligned_cols=63 Identities=5% Similarity=0.068 Sum_probs=50.0
Q ss_pred hhhhceeeeehhccCCCCChhHHHHHHHHHhccC--CCC-ChHHHHHHHHhhhhhccccc-cCCCCCceE
Q 014910 348 RYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRM--FKP-DIKAIKKRMEDLITRDYLER-DKENPNMFR 413 (416)
Q Consensus 348 ~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~--F~~-~~~~ik~~Ie~Liereyi~r-~~~~~~~y~ 413 (416)
..+..+.|+-.+..-.+|+.+.+.....-...+- |.. +.++.+.-++.+++.|-++- ++ +.|.
T Consensus 6 ~~v~w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~g---G~Yk 72 (74)
T 1ldd_A 6 LQRSLPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIAN---GSYE 72 (74)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCTT---TEEE
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeCC---CEEe
Confidence 5677889999999999999999998876665543 433 67999999999999999984 44 4554
No 257
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=29.24 E-value=51 Score=30.66 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=30.0
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
...|++||++.+|++...+.+.|..|.. .+++..
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~ 84 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVA--IGLLEE 84 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEe
Confidence 5789999999999999999999999974 578865
No 258
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=29.10 E-value=40 Score=27.26 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=40.2
Q ss_pred EEEcHHHHHHHHhhhCCCCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecC
Q 014910 248 LIVSTYQAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+.+|.....||-.+.+.+.+|.+||.+.+ +++...+-|+|..|. ..+++.+.
T Consensus 15 ~r~T~qR~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~--e~Glv~~i 71 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLE--ELGLVSHA 71 (145)
T ss_dssp CCCCHHHHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHH--HCCcEEEE
Confidence 45567777888766554589999998877 689999999999997 35777654
No 259
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=28.88 E-value=34 Score=26.86 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=31.7
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
.|...+.....++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 33 ~iL~~l~~~~~~t~~~la~~--------l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAEL--------IKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCcCcCHHHHHHH--------HCCCHhHHHHHHHHHHHCCCEEeec
Confidence 34444444556666665553 2367888999999999999999953
No 260
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=28.87 E-value=30 Score=27.91 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=33.6
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIF--------AVVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCChhHHHHHHHHHHHCCCEEecC
Confidence 3444555555566666666553 3467888999999999999999953
No 261
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=28.67 E-value=18 Score=29.49 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=36.0
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
-+..|...+.....++..+|-..+ ..+...+-..|..|.++|||+|..
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERS--------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 345566666667778877776543 357778999999999999999864
No 262
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=28.64 E-value=21 Score=29.27 Aligned_cols=44 Identities=9% Similarity=0.185 Sum_probs=35.2
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 14 ~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERV--------ALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeee
Confidence 466677777778888877753 36888899999999999999973
No 263
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=28.48 E-value=64 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=28.7
Q ss_pred EcHHHHHHHHh-hhCCCCcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 250 VSTYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 250 ~s~~Q~~iLl~-Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
+|+-|..++.+ +- .++|..||++.+|++...+...+..-
T Consensus 23 L~~~~r~vl~l~y~--~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 23 LTDKQMNYIELYYA--DDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp SCHHHHHHHHHHHH--TCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45556666654 33 35799999999999999888776654
No 264
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=28.40 E-value=24 Score=27.50 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHhhhhhccccccC
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
.+..+...+-..|..|.++|||+|..
T Consensus 61 ~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 61 LTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 35578888999999999999999953
No 265
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=28.36 E-value=50 Score=28.96 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=35.6
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+|.-|..||.+.- .+.|..||++.+|++...++.++..+.
T Consensus 175 ~Lt~re~~vl~~~~--~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTA--VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788888888875 468999999999999999999998875
No 266
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=28.29 E-value=25 Score=27.10 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=23.7
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCC
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKE 407 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~ 407 (416)
.|..+..-|.+++..|...|+|++.++
T Consensus 42 ~~~vSr~tvr~al~~L~~~Gli~~~~~ 68 (113)
T 3tqn_A 42 EYQINPLTVSKAYQSLLDDNVIEKRRG 68 (113)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 466888999999999999999998764
No 267
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=28.16 E-value=25 Score=27.70 Aligned_cols=31 Identities=10% Similarity=0.247 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|..+..-|.+++..|...|+|++.++ .++|
T Consensus 46 ~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~ 76 (125)
T 3neu_A 46 KLAVNPNTVSRAYQELERAGYIYAKRG-MGSF 76 (125)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCeEEEecC-CEEE
Confidence 467889999999999999999998874 3444
No 268
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=27.99 E-value=60 Score=26.98 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=29.0
Q ss_pred HhhhCCCCcCHHHHHHHcC--CCHHHHHHHHHhhh
Q 014910 259 LLFNTSDRLSYSEIMTQLN--LTHDDLVRLLHSLS 291 (416)
Q Consensus 259 l~Fn~~~~~t~~ei~~~~~--i~~~~l~~~L~~L~ 291 (416)
++|-..+++|+++|++.++ ++.+++...|..|.
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~ 49 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELN 49 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHH
Confidence 4566677899999999999 99999999999885
No 269
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=27.88 E-value=88 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
..+|++||++.+|+++..+.+.|..|.. .+++...
T Consensus 37 g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~ 71 (332)
T 3i53_A 37 GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRD 71 (332)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEec
Confidence 5899999999999999999999999974 5788753
No 270
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=27.83 E-value=31 Score=27.12 Aligned_cols=43 Identities=9% Similarity=0.270 Sum_probs=30.1
Q ss_pred eehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 356 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 356 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
...+...+.++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 43 L~~l~~~~~~t~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 43 LEGIEANEPISQKEIALW--------TKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHcCCcCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCeeccC
Confidence 333333455666555543 3467888999999999999999864
No 271
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=27.81 E-value=52 Score=22.19 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=28.1
Q ss_pred hhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 261 FNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 261 Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
=|....+.++.+++..|++.+++...|..|..
T Consensus 20 r~sGGildI~~~a~kygV~kdeV~~~LrrLe~ 51 (59)
T 2xvc_A 20 VNNGGFLDIEHFSKVYGVEKQEVVKLLEALKN 51 (59)
T ss_dssp HHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35567899999999999999999999999963
No 272
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=27.78 E-value=23 Score=28.70 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=36.2
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLER 404 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 404 (416)
+..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|
T Consensus 10 d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcce
Confidence 33566777777888888877754 3688889999999999999997
No 273
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=27.67 E-value=45 Score=25.15 Aligned_cols=44 Identities=9% Similarity=0.318 Sum_probs=32.2
Q ss_pred eeeehhc-cCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 354 ALVRIMK-SRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 354 ~IVRimK-~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
.|+..+. ....++..+|-. .+..+...+.+++..|.+.|+|.+.
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~--------~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIAN--------QLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHH--------TTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444443 232566666544 5778999999999999999999987
No 274
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.48 E-value=24 Score=29.48 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=37.4
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|-
T Consensus 29 d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 29 DKKIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEee
Confidence 34577777777889998887754 36888999999999999999874
No 275
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=27.30 E-value=33 Score=26.94 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=32.0
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|... +..+...+-..|..|.++|||+|..
T Consensus 39 ~~~iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 39 QFLVLTILWDESPVNVKKVVTE--------LALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHH--------TTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHH--------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 3344455555555665555443 3456777999999999999999864
No 276
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=27.22 E-value=75 Score=27.57 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=35.3
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+|.-|..||.++- .+.|.+||++.+|++...++.++....
T Consensus 173 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 173 WLDPKEATYLRWIA--VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCHHHHHHHHHHT--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57888888888764 578999999999999999999988765
No 277
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=27.21 E-value=93 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
....++.+|.+ ++|+++|+..-|++..++..+|..++
T Consensus 21 t~~~t~~l~~~--G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 21 MKVSIVQQIDR--KVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45567777875 67999999999999999999998875
No 278
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=27.12 E-value=23 Score=27.97 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=34.4
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+...+.++..+|-..+ ..+.+.+-..|..|.++|||+|..
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERV--------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCeEecC
Confidence 34445555556667777766543 368888999999999999999864
No 279
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=27.10 E-value=60 Score=29.86 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 255 AATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 255 ~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
+..+......+.+|.+||++.+|++...+.|-|..|- +.+++.
T Consensus 10 ~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~--~~G~v~ 52 (315)
T 2w48_A 10 IVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGR--EQGIVT 52 (315)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEE
Confidence 3333333445679999999999999999999999985 456664
No 280
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=26.96 E-value=24 Score=29.49 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=37.0
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|.
T Consensus 19 d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKDARLTISELSEQL--------KKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 33567778777888988887754 36888899999999999999863
No 281
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=26.88 E-value=64 Score=24.94 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=47.3
Q ss_pred hhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 346 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 346 ~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
-++-.++.+|..++. .+.+.--+|...+.+. +.+.++...+=..+..|.+.|+|++.
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 345677888888887 4778888999998764 45578999999999999999999986
No 282
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=26.72 E-value=32 Score=30.34 Aligned_cols=31 Identities=10% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|..+...+.++|..|.+.|+|.+..+ .++|
T Consensus 42 ~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~ 72 (236)
T 3edp_A 42 IYSSSRTTIRRAVDLLVEEGLVVRKNG-VGLY 72 (236)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEECC-ceEE
Confidence 588999999999999999999999874 3444
No 283
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=26.50 E-value=54 Score=26.48 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=27.5
Q ss_pred EcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHh
Q 014910 250 VSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHS 289 (416)
Q Consensus 250 ~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~ 289 (416)
++.-|-.|+.+. ...++|++||++.+|++...++..|.-
T Consensus 94 Lp~~~r~vl~L~-~~~g~s~~EIA~~lgis~~tV~~~l~r 132 (157)
T 2lfw_A 94 MTPLSRQALLLT-AMEGFSPEDAAYLIEVDTSEVETLVTE 132 (157)
T ss_dssp SCTTHHHHHTTT-SSSCCCHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555555443 234789999999999999887776543
No 284
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=26.44 E-value=46 Score=26.13 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCCCChHHHHHHHHhhhhhccccccC
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
.+..+...+-..|..|.++|||+|..
T Consensus 63 ~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 63 QLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp TTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred HHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 46678899999999999999999964
No 285
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=26.29 E-value=35 Score=27.02 Aligned_cols=42 Identities=7% Similarity=0.071 Sum_probs=29.3
Q ss_pred ehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 357 RIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 357 RimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
..+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 49 ~~l~~~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 49 QWLLEEGDLTVGELSNK--------MYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp HHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHcCCCCHHHHHHH--------HCCCchhHHHHHHHHHHCCCeeecC
Confidence 33333445555555443 3468888999999999999999853
No 286
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=26.17 E-value=36 Score=27.01 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=32.6
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~--------l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAA--------LQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCeeecC
Confidence 3344444444555666555553 3467888999999999999999964
No 287
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=26.17 E-value=91 Score=22.05 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=28.2
Q ss_pred HHHHHhhhCCC--CcCHHHHHHHcCCCHHHHHHHHHhh
Q 014910 255 AATLLLFNTSD--RLSYSEIMTQLNLTHDDLVRLLHSL 290 (416)
Q Consensus 255 ~~iLl~Fn~~~--~~t~~ei~~~~~i~~~~l~~~L~~L 290 (416)
..|+-..++.+ ..++++|+..+|++.+++.++|.-+
T Consensus 35 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 35 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp HHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 34555666665 5789999999999999999988755
No 288
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=26.09 E-value=1e+02 Score=22.81 Aligned_cols=28 Identities=0% Similarity=0.141 Sum_probs=23.8
Q ss_pred CCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 264 SDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 264 ~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+.+|+++|++.+|++...+.+.+....
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSR 43 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 4569999999999999999988877653
No 289
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=25.95 E-value=32 Score=26.66 Aligned_cols=55 Identities=7% Similarity=0.076 Sum_probs=45.1
Q ss_pred hhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 348 RYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 348 ~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+-.++.+|..++. .+.+.--+|...+.+ .+.+.++...+=..+..|.+.|+|++.
T Consensus 7 ~g~l~~~IL~~L~-~~~~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~ 61 (115)
T 4esb_A 7 KGVLEGCILYIIS-QEEVYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGT 61 (115)
T ss_dssp TTTHHHHHHHHHH-HSCEEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hCHHHHHHHHHHH-cCCCCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEE
Confidence 3456777777886 467888899998877 455689999999999999999999985
No 290
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=25.73 E-value=15 Score=34.73 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred EEEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeee
Q 014910 248 LIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILL 299 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~ 299 (416)
+.++.-|..||......+.+|..||++.+|++...+.+.|..|. +.+++.
T Consensus 16 ~~~~~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le--~~Glv~ 65 (345)
T 2o0m_A 16 LDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLK--QLNLIE 65 (345)
T ss_dssp ----------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEE
Confidence 34556688888888888899999999999999999999999996 456665
No 291
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=25.64 E-value=28 Score=28.18 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=35.4
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
.|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|.
T Consensus 11 ~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKIT--------GLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHH--------CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEE
Confidence 466677777788888877653 36888899999999999999874
No 292
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=25.58 E-value=26 Score=28.23 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=36.1
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
+..|.+.+.....++..+|-..+ ..+...+.++|..|.+.|+|+|.
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEE
Confidence 34566677777788888877754 36788899999999999999864
No 293
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=25.53 E-value=69 Score=29.86 Aligned_cols=34 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
..+|++||++.+|++...+.+.|..|+. .+++..
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~ 81 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEG 81 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEE
Confidence 5799999999999999999999999974 578875
No 294
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=25.41 E-value=37 Score=26.38 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=47.0
Q ss_pred hhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 346 DRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 346 ~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
-++-.++.+|..++. .+.+.--+|...+.+ .+.+.++...+=..+..|.++|+|++.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 345667888888887 467888899998876 445689999999999999999999986
No 295
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=25.38 E-value=75 Score=22.50 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHh-hccCCh-hHHHHHHHHHHHHHHcCCCC
Q 014910 63 SELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLL-AYISDK-DLFAEFYRKKLARRLLFDRS 124 (416)
Q Consensus 63 ~e~La~y~d~~l~~~~~~~~~~~e~~~~l~~i~~lf-~~l~~K-D~F~~~Y~~~La~RLL~~~s 124 (416)
-++++.+++.++.+ + +++++...|+.+-..+ ..+... ..|+..|-..+.+-|....+
T Consensus 8 C~~vv~~ve~~l~~----n-t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~~l~~~~~ 66 (77)
T 1of9_A 8 CTGLINTLENLLTT----K-GADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQLIEDKVD 66 (77)
T ss_dssp HHHHHHHHHHHCSS----S-CSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHH----C-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46788899998875 4 6788888888887776 333333 67888888888887776543
No 296
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=25.33 E-value=38 Score=26.79 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=26.2
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|..+..-|.+++..|...|+|++.++ .++|
T Consensus 37 ~~gvSr~tVr~Al~~L~~~Gli~~~~g-~G~~ 67 (129)
T 2ek5_A 37 FHRINPATARNGLTLLVEAGILYKKRG-IGMF 67 (129)
T ss_dssp HTTCCHHHHHHHHHHHHTTTSEEEETT-TEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCcEEEecC-CEEE
Confidence 488899999999999999999998874 3444
No 297
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.29 E-value=57 Score=22.38 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=19.2
Q ss_pred cCHHHHHHHcCCCHHHHHHHHH
Q 014910 267 LSYSEIMTQLNLTHDDLVRLLH 288 (416)
Q Consensus 267 ~t~~ei~~~~~i~~~~l~~~L~ 288 (416)
+|..||++..|++...+-+.|+
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4789999999999999888775
No 298
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=25.20 E-value=30 Score=29.44 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=34.0
Q ss_pred hhhhceeeeehhccCC-CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCC
Q 014910 348 RYAIDAALVRIMKSRK-VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPN 410 (416)
Q Consensus 348 ~~~i~A~IVRimK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 410 (416)
+..|=.+|...++.++ ..+..||-..+ ..+...+.+.|..|.++|||+|+...+.
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~l--------gl~~~tv~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRF--------RITPRGALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEECC---TT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHc--------CCCcHHHHHHHHHHHHCCCEEecCCCcc
Confidence 3344445555555443 56766665543 3344469999999999999999876443
No 299
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=25.00 E-value=27 Score=27.29 Aligned_cols=47 Identities=6% Similarity=0.134 Sum_probs=32.5
Q ss_pred ceeeeehhccCC--CCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRK--VLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k--~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+-..+ .++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKA--------LQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 334444444443 6776666553 3367888999999999999999863
No 300
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=24.98 E-value=55 Score=24.89 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=36.0
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 414 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 414 (416)
|.+.+. .+.++..+|-..+ . ..+...+-..|..|.++|||+|.. .|+....|
T Consensus 27 IL~~L~-~~~~~~~eLa~~l----~---~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~ 80 (112)
T 1z7u_A 27 LMDELF-QGTKRNGELMRAL----D---GITQRVLTDRLREMEKDGLVHRESFNELPPRVEY 80 (112)
T ss_dssp HHHHHH-HSCBCHHHHHHHS----T---TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh----c---cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444454 3667877776542 0 468888999999999999999864 44544444
No 301
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=24.98 E-value=38 Score=27.36 Aligned_cols=46 Identities=13% Similarity=0.155 Sum_probs=32.2
Q ss_pred eeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 353 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 353 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
..|...+.....++..+|-. .+..+...+-..|..|.++|||+|..
T Consensus 56 ~~vL~~l~~~~~~t~~eLa~--------~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 56 LRLLSSLSAYGELTVGQLAT--------LGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp HHHHHHHHHHSEEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHhCCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 33444444445555555544 34578888999999999999999864
No 302
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=24.98 E-value=40 Score=28.27 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=27.8
Q ss_pred CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 362 RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 362 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
.+.++..+|-.. +..+.+.+-..|..|.++|||+|..
T Consensus 55 ~~~~t~~eLa~~--------l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 55 EEETTLNNIARK--------MGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp GGGCCHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 345666666543 2367788999999999999999953
No 303
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=24.90 E-value=35 Score=25.86 Aligned_cols=54 Identities=7% Similarity=0.038 Sum_probs=38.2
Q ss_pred ceeeeehhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC-CCCceE
Q 014910 352 DAALVRIMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE-NPNMFR 413 (416)
Q Consensus 352 ~A~IVRimK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~-~~~~y~ 413 (416)
...|+..++....+ +..+|.. .|..+..-|.++|..|.+.|+|++..+ ..+.|.
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~--------~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V 85 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIAD--------RVGITRSVIVNALRKLESAGVIESRSLGMKGTYI 85 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEE
Confidence 34444666655555 6666555 467899999999999999999998762 245554
No 304
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=24.88 E-value=30 Score=27.61 Aligned_cols=44 Identities=7% Similarity=0.125 Sum_probs=30.8
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
|...+.....++..+|... +..+...+-..|..|.++|||+|..
T Consensus 52 iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGER--------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHhCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 3444444455555555443 3368888999999999999999964
No 305
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=24.87 E-value=84 Score=22.71 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=28.1
Q ss_pred CCcCHHHHHHHc--------CCCHHHHHHHHHhhhc-ccceeee
Q 014910 265 DRLSYSEIMTQL--------NLTHDDLVRLLHSLSC-AKYKILL 299 (416)
Q Consensus 265 ~~~t~~ei~~~~--------~i~~~~l~~~L~~L~~-~k~~iL~ 299 (416)
..+|+-||.+.- |||.+.|.++|..|.. +|+.|+.
T Consensus 26 sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~ 69 (79)
T 3htu_A 26 SVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT 69 (79)
T ss_dssp SEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 378999998822 7999999999999974 5677775
No 306
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=24.84 E-value=27 Score=27.91 Aligned_cols=47 Identities=4% Similarity=0.116 Sum_probs=32.4
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 43 q~~iL~~l~~~~~~~~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 43 QYLVMLTLWEENPQTLNSIGRH--------LDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHH--------HTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 3444455555566666666554 3467888999999999999999864
No 307
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=24.56 E-value=35 Score=26.39 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=35.4
Q ss_pred eeeeehhccCCCCChhHHHHHHHHHhccCC--CCChHHHHHHHHhhhhhccccccC
Q 014910 353 AALVRIMKSRKVLGHQQLVSECVEQLSRMF--KPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 353 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F--~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
-.|...|+....++..+|-. .+ ..+...|.++|..|.+.|+|++..
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~--------~l~~giS~~aVs~rL~~Le~~GLV~~~~ 63 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELED--------RDEIRISKSSVSRRLKKLADHDLLQPLA 63 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHT--------STTCCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHcCCCCHHHHHH--------HHhcCCCHHHHHHHHHHHHHCCCEEecC
Confidence 34556666666777666654 45 679999999999999999999864
No 308
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=24.41 E-value=28 Score=28.15 Aligned_cols=25 Identities=8% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHhhhhhccccccC
Q 014910 382 FKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 382 F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..+.+.+-..|+.|.++|||+|..
T Consensus 56 l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 56 IGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCcCHHHHHHHHHHHHhCCCeEeec
Confidence 4467888999999999999998753
No 309
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.18 E-value=32 Score=27.08 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 014910 375 VEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 413 (416)
Q Consensus 375 ~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 413 (416)
..+|...|..+..-|.+++..|...|+|.+.++ .++|+
T Consensus 38 e~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g-~G~~V 75 (126)
T 3by6_A 38 VRETALQEKINPNTVAKAYKELEAQKVIRTIPG-KGTFI 75 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC-CeEEE
No 310
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=24.11 E-value=1.2e+02 Score=23.50 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=27.3
Q ss_pred HhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhc
Q 014910 259 LLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSC 292 (416)
Q Consensus 259 l~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~ 292 (416)
.+..+ +.-++..|.+.||+|...++..|..|..
T Consensus 27 ~lId~-~~~nvp~L~~~TGmPRRTiQd~I~aL~e 59 (117)
T 3ke2_A 27 HLMDD-ARHNLLSLGKLTGMPRRTLQDAIASFAD 59 (117)
T ss_dssp HHHHH-SCCCHHHHHHHHCCCHHHHHHHHHTGGG
T ss_pred HHHhc-CCCCHHHHHHHHCCCHhHHHHHHHHhhh
Confidence 33444 4459999999999999999999999974
No 311
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=24.07 E-value=31 Score=27.38 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=27.7
Q ss_pred eeeeehhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 353 AALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 353 A~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
..|...+... ..++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~--------l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQF--------FGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC--------------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHHHhCCCCCCCHHHHHHH--------HCCChhHHHHHHHHHHHCCCEEeeC
Confidence 3444444443 56666666543 4456677889999999999999864
No 312
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=23.82 E-value=37 Score=26.76 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=34.0
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 33 q~~iL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 33 LFAVLYTLATEGSRTQKHIGEK--------WSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecc
Confidence 4445555555556777776553 3367888999999999999999954
No 313
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=23.67 E-value=67 Score=28.74 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=35.7
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+|.-+..||.+.- .+.|..||++.+|++...++.++....
T Consensus 197 ~Lt~re~~vl~~~~--~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 197 PLSQREYDIFHWMS--RGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp CCCHHHHHHHHHHH--TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56788888898885 578999999999999999999998875
No 314
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=23.62 E-value=84 Score=29.00 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.9
Q ss_pred CcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 266 RLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 266 ~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
.+|++||++.+|+++..+.+.|..|+. .+++...
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEec
Confidence 899999999999999999999999974 5788753
No 315
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=23.58 E-value=35 Score=30.38 Aligned_cols=45 Identities=11% Similarity=0.316 Sum_probs=35.1
Q ss_pred hccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceE
Q 014910 359 MKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 413 (416)
Q Consensus 359 mK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 413 (416)
++....+ +..+|.. .|..+...+.++|..|.+.|+|.| .+ .++|+
T Consensus 30 ~~~g~~lPse~~La~--------~~~vSr~tvr~Al~~L~~~G~i~~-~g-~Gt~V 75 (248)
T 3f8m_A 30 MRIGDPFPAEREIAE--------QFEVARETVRQALRELLIDGRVER-RG-RTTVV 75 (248)
T ss_dssp CCTTCBCCCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE-ET-TEEEE
T ss_pred CCCCCcCcCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEe-CC-CEEEE
Confidence 6666666 5555555 488999999999999999999999 64 45553
No 316
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.54 E-value=56 Score=26.09 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=46.5
Q ss_pred EEEcHHHHHHHHhhhC-CCCcCHHHHHHHc-----CCCHHHHHHHHHhhhcccceeeecCCCCCCCCCCCeEEEcc
Q 014910 248 LIVSTYQAATLLLFNT-SDRLSYSEIMTQL-----NLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFNS 317 (416)
Q Consensus 248 l~~s~~Q~~iLl~Fn~-~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~lN~ 317 (416)
+.+|.....||..+.+ ...+|.+||.+.+ +++...+-++|..|. ..+++.+...+ .....|.++.
T Consensus 10 ~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~g~~~Y~~~~ 80 (139)
T 3mwm_A 10 GRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLA--DAGEVDVLRTA---EGESVYRRCS 80 (139)
T ss_dssp CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HTTSSEEEECT---TSCEEEECCS
T ss_pred CccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHH--HCCCEEEEEcC---CCceEEEECC
Confidence 4667777888877765 3589999999887 689999999999997 45777654211 1124566654
No 317
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.47 E-value=34 Score=27.18 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=33.4
Q ss_pred hhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 358 IMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 358 imK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.++..-.+ +..+|-. .|..+..-|.+++..|...|+|++.++ .++|
T Consensus 31 ~l~pG~~LPser~La~--------~~gVSr~tVReAl~~L~~eGlv~~~~g-~G~~ 77 (134)
T 4ham_A 31 VLQEGEKILSIREFAS--------RIGVNPNTVSKAYQELERQEVIITVKG-KGTF 77 (134)
T ss_dssp SSCTTCEECCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred CCCCCCCCccHHHHHH--------HHCCCHHHHHHHHHHHHHCCcEEEEcC-cEEE
Confidence 45555555 4444433 477899999999999999999998774 3544
No 318
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=23.37 E-value=43 Score=24.34 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=31.9
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhcccccc
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERD 405 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 405 (416)
.|...+...+.++..+|-.. +..+...+-..|..|.+.|||++.
T Consensus 20 ~iL~~L~~~~~~~~~ela~~--------l~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKV--------LDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34444544456776666553 356888899999999999999964
No 319
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=23.31 E-value=30 Score=27.83 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=32.7
Q ss_pred ceeeeehh-ccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIM-KSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRim-K~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+ .....++..+|... +..+...+-..|..|.++|||+|..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~--------l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGA--------LKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHH--------CSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------HCCChhhHHHHHHHHHHCCCEEeec
Confidence 44555566 45556666666553 3456677889999999999999964
No 320
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.30 E-value=78 Score=27.54 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=34.8
Q ss_pred EEcHHHHHHHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 249 IVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 249 ~~s~~Q~~iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+|.-|..||.++- .+.|.+||++.+|++...++.++....
T Consensus 175 ~Lt~~e~~vl~~~~--~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 175 MLSPREMLCLVWAS--KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp SCCHHHHHHHHHHH--TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46788888887765 478999999999999999999988775
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.27 E-value=90 Score=25.00 Aligned_cols=58 Identities=3% Similarity=0.033 Sum_probs=41.4
Q ss_pred eeeehhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 354 ALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 354 ~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
+|..+|.. .+-++.++|...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 34555544 55799999998875532 246788999999999999999987654334344
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.19 E-value=1e+02 Score=24.92 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=42.3
Q ss_pred eeeehhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 354 ALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 354 ~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
+|..++.. .+-++.++|...+.+.. -.++...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKD---KNTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 34444544 45799999999987653 246888999999999999999987644344444
No 323
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=23.16 E-value=62 Score=24.29 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=36.3
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCC-CChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFK-PDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 414 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~-~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 414 (416)
|.+.+. .+.++..+|... .. .+...+-..|..|.++|+|+|.. .|+....|
T Consensus 30 IL~~L~-~~~~~~~eL~~~--------l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y 83 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRA--------IPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEY 83 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHH--------STTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCcCHHHHHHH--------cccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEE
Confidence 445555 567887777653 33 68889999999999999999864 34444444
No 324
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=23.05 E-value=38 Score=26.62 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=26.6
Q ss_pred hccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 378 LSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 378 l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
|...|..+..-|.+++..|...|+|++.++ .++|
T Consensus 41 La~~~~vSr~tvr~Al~~L~~~G~i~~~~~-~G~~ 74 (126)
T 3ic7_A 41 YASIVEVNANTVMRSYEYLQSQEVIYNKRG-IGFF 74 (126)
T ss_dssp TTTCC-CCSGGGHHHHHHHHTTTSEEEETT-TEEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCcEEEEcC-CccE
Confidence 334678888999999999999999998874 3444
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.01 E-value=42 Score=27.30 Aligned_cols=58 Identities=3% Similarity=0.130 Sum_probs=41.4
Q ss_pred eeeehhccC--CCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 354 ALVRIMKSR--KVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 354 ~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
+|..++... +-++.++|...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 80 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLG---EEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVF 80 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 345555443 5699999999887642 246888999999999999999987543233334
No 326
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=22.93 E-value=1.3e+02 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 264 SDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 264 ~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
.+.+|+++|++.+|++...+.+.+....
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3479999999999999999988876653
No 327
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=22.91 E-value=11 Score=30.64 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
+|......-+++|+.|.++|.|+.-..+....+|.
T Consensus 72 RlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYT 106 (143)
T 2xzm_8 72 KLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYS 106 (143)
T ss_dssp HHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEE
T ss_pred HhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEe
Confidence 57788999999999999999999887777888885
No 328
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=22.79 E-value=54 Score=23.47 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=25.6
Q ss_pred cCCCCChHHHHHHHHhhhhhccccccCCCC
Q 014910 380 RMFKPDIKAIKKRMEDLITRDYLERDKENP 409 (416)
Q Consensus 380 ~~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 409 (416)
+.+..+.+.|.+.|-.|.++||+...++.|
T Consensus 37 kkLg~sK~~vNr~LY~L~kkG~V~~~~~~P 66 (75)
T 1sfu_A 37 NRLKINKKKINQQLYKLQKEDTVKMVPSNP 66 (75)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEecCCCCC
Confidence 356788899999999999999998887655
No 329
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.54 E-value=39 Score=27.68 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=31.5
Q ss_pred ceeeeehhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+.. ...++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~--------l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKA--------IGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------HCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3334444443 445666665443 3467888999999999999999964
No 330
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=22.50 E-value=39 Score=30.56 Aligned_cols=31 Identities=6% Similarity=0.085 Sum_probs=25.2
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|..+...|.++|..|.+.|+|.+..+ .++|
T Consensus 62 ~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~ 92 (272)
T 3eet_A 62 EYGVSDTVALEARKVLMAEGLVEGRSG-SGTY 92 (272)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEECCC---EE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEecC-ceEE
Confidence 477899999999999999999999874 3444
No 331
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.38 E-value=1.2e+02 Score=22.73 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
+.+|+++|++.+|++...|.+.+....
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 569999999999999999988776653
No 332
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.37 E-value=48 Score=25.52 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
++......-+.+|+.|.++|.|..-..+....+|.
T Consensus 69 RlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 69 RLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred hhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 45677788899999999999999988777777774
No 333
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=22.34 E-value=47 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=42.3
Q ss_pred hhhceeeeehhccCCCCChhHHHHHHHHHhccCCC--CCh-HHHHHHHHhhhhhccccccC
Q 014910 349 YAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFK--PDI-KAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 349 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~--~~~-~~ik~~Ie~Liereyi~r~~ 406 (416)
..++.+|...+.. +.++-.+|...+.+ .+.+. ++. ..+-..|..|.+.|||++..
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~--~g~~~~~is~~~tly~~L~~Le~~GlI~~~~ 69 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAE--FGIEIPGIGHMGNIYRVLADLEESGFLSTEW 69 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHT--TCCSSTTCCCCCCHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHH--hCCcccCCCCcchHHHHHHHHHHCCCeEEEe
Confidence 3456677777754 67888899888865 23334 788 89999999999999999864
No 334
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=22.31 E-value=95 Score=23.60 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=31.4
Q ss_pred hhCCCCc-CHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 261 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 261 Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
+...+.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~--~Gli~~~ 66 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTVSKAYQSLLD--DNVIEKR 66 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 3344567 9999999999999999999999973 4677653
No 335
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=22.13 E-value=61 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.3
Q ss_pred cCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 267 LSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 267 ~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
=|++||++.+|++.+.|+..+...-
T Consensus 96 dTleeLA~~~gid~~~L~~TV~~yN 120 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTVKNYQ 120 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3899999999999999999998763
No 336
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=21.81 E-value=45 Score=29.36 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.8
Q ss_pred hhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 358 IMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 358 imK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.++....+ +..+|.. .|..+..-+.+++..|.+.|+|.+..+ .++|
T Consensus 22 ~~~~g~~lPse~~La~--------~~~vSr~tvr~Al~~L~~~g~i~~~~g-~G~~ 68 (239)
T 3bwg_A 22 QLQQGDKLPVLETLMA--------QFEVSKSTITKSLELLEQKGAIFQVRG-SGIF 68 (239)
T ss_dssp TCCTTCBCCCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEEETT-TEEE
T ss_pred CCCCCCCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCcEEEeCC-ceEE
Confidence 34544555 4555544 588999999999999999999999764 3444
No 337
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.80 E-value=1.5e+02 Score=21.80 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.5
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
..+|+++|++.+|++...+.+.+....
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 579999999999999999988876653
No 338
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=21.78 E-value=43 Score=27.04 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=36.7
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC--CCCCceEe
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK--ENPNMFRY 414 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 414 (416)
|++.+. .+.++..+|-..+ ..+...+-++|..|.+.|+|+|.. .|+ ...|
T Consensus 29 IL~~L~-~g~~~~~eLa~~l--------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSL--------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 455554 5678888876653 367888999999999999999864 355 5555
No 339
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=21.74 E-value=26 Score=27.66 Aligned_cols=48 Identities=19% Similarity=0.375 Sum_probs=31.7
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
-+..|...+.....++..+|-..+ ..+...+-..|..|.++|||+|..
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQM--------CRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHH--------C---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 344555556666677777766543 356677899999999999999964
No 340
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=21.73 E-value=32 Score=27.71 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=34.9
Q ss_pred hceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 351 IDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 351 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
-+..|...+.....++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 51 ~q~~vL~~l~~~~~~t~~eLa~~--------l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 51 GQFPFLMRLYREDGINQESLSDY--------LKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp TTHHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEEec
Confidence 34455555555666777766553 3467888999999999999999864
No 341
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.72 E-value=45 Score=25.84 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=35.3
Q ss_pred eeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 354 ALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 354 ~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.|.+.+...+.++..+|-..+ ..+...+-..|..|.+.|+|.+....+..|
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l--------~is~stvs~~L~~L~~~Glv~~~~~gr~~~ 96 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANIL--------GVTIANASHHLRTLYKQGVVNFRKEGKLAL 96 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEC----CCE
T ss_pred HHHHHHHHCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEECCEEE
Confidence 466667656778877776643 357788999999999999999876544444
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.57 E-value=96 Score=24.30 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHhhhhhhceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEe
Q 014910 344 DKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRY 414 (416)
Q Consensus 344 ~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 414 (416)
...|...+++. ....+-++.+||...+.+.. -..+...|=+.|+.|.+.|+|.+-..+.+...|
T Consensus 10 T~qR~~Il~~l----~~~~~~~sa~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 10 TRQRAAISTLL----ETLDDFRSAQELHDELRRRG---ENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHHHHH----HHCCSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred CHHHHHHHHHH----HhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 34454444433 13455799999999887642 246888999999999999999987644343333
No 343
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=21.35 E-value=65 Score=30.42 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=40.7
Q ss_pred HHHhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCCC--CCCCCCCCeEEEccCCC
Q 014910 257 TLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPN--TKTISQSDHFEFNSKFT 320 (416)
Q Consensus 257 iLl~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~~--~~~i~~~~~~~lN~~f~ 320 (416)
||.++. +..+|-.||++.||++...+.+.+..|.. .+++...+. +..=.+...+.+|.++.
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~--~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLE--KGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEEECCC----CCCEEEEECGGGC
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 343444 56899999999999999999999999974 466654321 11112445577776643
No 344
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.14 E-value=56 Score=25.89 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=30.0
Q ss_pred eeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 355 LVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 355 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
|...+...+.++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 42 iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 42 VLASLKKHGSLKVSEIAER--------MEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp HHHHHHHHSEEEHHHHHHH--------HTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEeecC
Confidence 3333433444555555443 3467888999999999999999864
No 345
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=21.11 E-value=87 Score=27.41 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=29.7
Q ss_pred HhhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 259 LLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 259 l~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
++|-..+.+|+++|++.++++...+...|..|.
T Consensus 23 lLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~ 55 (219)
T 2z99_A 23 LLLVIDTPVTADALAAATEQPVYRVAAKLQLMA 55 (219)
T ss_dssp HHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567777889999999999999999999999885
No 346
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.95 E-value=46 Score=26.14 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=32.3
Q ss_pred eeehhcc-CCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 355 LVRIMKS-RKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 355 IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
|...+.. .+.++..+|-.. +..+...+-..|..|.++|||+|..
T Consensus 40 iL~~l~~~~~~~~~~~la~~--------l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 40 VLGAIDRLGGDVTPSELAAA--------ERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHTTSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCCCCHHHHHHH--------hCCChhhHHHHHHHHHHCCCEeeCC
Confidence 3344444 566777666653 4468888999999999999999964
No 347
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=20.79 E-value=50 Score=25.43 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
++......-+.+|+.|.++|.|..-..+....+|.
T Consensus 68 RlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 68 RLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp TTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred hhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 78889999999999999999999988777788885
No 348
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=20.78 E-value=35 Score=27.35 Aligned_cols=26 Identities=4% Similarity=0.185 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHhhhhhccccccC
Q 014910 381 MFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
....+...+-..|+.|.++|||+|..
T Consensus 60 ~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 60 RLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 34568888999999999999999864
No 349
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.74 E-value=1.2e+02 Score=24.93 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=26.1
Q ss_pred cHHHHHHHHh-hhCCCCcCHHHHHHHcCCCHHHHHHHHHh
Q 014910 251 STYQAATLLL-FNTSDRLSYSEIMTQLNLTHDDLVRLLHS 289 (416)
Q Consensus 251 s~~Q~~iLl~-Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~ 289 (416)
+.-|-.|+.+ +- ..+|++||++.+|++...++..+..
T Consensus 142 ~~~~r~vl~l~~~--~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 142 PEDLRMAITLREL--DGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp CHHHHHHHHHHHT--TCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHhHHHHH--cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444433 32 4689999999999999887776544
No 350
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=20.53 E-value=58 Score=24.98 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=24.3
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhh
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLS 291 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~ 291 (416)
..+|+.||++.+|++...+.|..+.|-
T Consensus 38 ~~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 38 IESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 478999999999999999999888874
No 351
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=20.51 E-value=34 Score=27.18 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred ceeeeehhc-cCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccC
Q 014910 352 DAALVRIMK-SRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDK 406 (416)
Q Consensus 352 ~A~IVRimK-~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 406 (416)
+..|...+. ....++..+|-..+ ..+...+-..|..|.++|||+|..
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l--------~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATM--------GLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHH--------TCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeeC
Confidence 334444443 33457777776643 357788999999999999999954
No 352
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=20.51 E-value=1e+02 Score=28.58 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=30.0
Q ss_pred CCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeec
Q 014910 265 DRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLK 300 (416)
Q Consensus 265 ~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~ 300 (416)
..+|++||++.+|+++..+.+.|..|+. .+++..
T Consensus 54 g~~t~~elA~~~g~~~~~l~rlLr~l~~--~g~l~~ 87 (348)
T 3lst_A 54 GPRTPAELAAATGTDADALRRVLRLLAV--RDVVRE 87 (348)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHh--CCCEEe
Confidence 4799999999999999999999999974 578875
No 353
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.38 E-value=1.8e+02 Score=22.68 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.7
Q ss_pred hhCCCCc-CHHHHHHHcCCCHHHHHHHHHhhhcccceeeecC
Q 014910 261 FNTSDRL-SYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKE 301 (416)
Q Consensus 261 Fn~~~~~-t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~ 301 (416)
|...+.+ |..+|++.+|++...+.++|..|.. .+++...
T Consensus 22 l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~--~Gli~~~ 61 (129)
T 2ek5_A 22 LSIDQRVPSTNELAAFHRINPATARNGLTLLVE--AGILYKK 61 (129)
T ss_dssp SCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHT--TTSEEEE
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEe
Confidence 3445677 9999999999999999999999973 4677654
No 354
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=20.38 E-value=43 Score=25.22 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=34.4
Q ss_pred eeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 014910 353 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 407 (416)
Q Consensus 353 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 407 (416)
..|.+.+ ..+.++..+|... +..+...+...|..|.+.|+|++..+
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~--------l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATR--------LPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHH--------SSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHH-HcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3455556 4566777776553 45788889999999999999998654
No 355
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=20.25 E-value=1.3e+02 Score=24.58 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHHHHHHhhhCCCCcCHHHHHHHc-----CCCHHHHHHHHHhhh
Q 014910 253 YQAATLLLFNTSDRLSYSEIMTQL-----NLTHDDLVRLLHSLS 291 (416)
Q Consensus 253 ~Q~~iLl~Fn~~~~~t~~ei~~~~-----~i~~~~l~~~L~~L~ 291 (416)
-|..|+.+.++++..|.+||++.+ +++...+.|-|.-|-
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~ 49 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQ 49 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcC
Confidence 577888889999999999999999 999999999998883
No 356
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=20.18 E-value=51 Score=29.14 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=33.4
Q ss_pred hhccCCCC-ChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 014910 358 IMKSRKVL-GHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMF 412 (416)
Q Consensus 358 imK~~k~l-~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 412 (416)
.++....+ +..+|.. .|..+...+.+++..|.+.|+|.+..+ .++|
T Consensus 27 ~~~~g~~lPse~~La~--------~~~vSr~tvr~Al~~L~~~G~i~~~~g-~G~~ 73 (243)
T 2wv0_A 27 ELQPDMPLPSEREYAE--------QFGISRMTVRQALSNLVNEGLLYRLKG-RGTF 73 (243)
T ss_dssp SSCTTCBCCCHHHHHH--------HHTCCHHHHHHHHHHHHHTTSEEECTT-SCEE
T ss_pred CCCCcCCCcCHHHHHH--------HHCcCHHHHHHHHHHHHHCCcEEEeCC-CeEE
Confidence 34555555 4555544 477899999999999999999998764 3554
No 357
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.06 E-value=57 Score=17.96 Aligned_cols=19 Identities=16% Similarity=0.559 Sum_probs=15.7
Q ss_pred CCCCChHHHHHHHHhhhhh
Q 014910 381 MFKPDIKAIKKRMEDLITR 399 (416)
Q Consensus 381 ~F~~~~~~ik~~Ie~Lier 399 (416)
.|.|-.++|++.++.+.++
T Consensus 2 ~~~P~~e~ik~q~~~i~e~ 20 (26)
T 1oef_A 2 WFEPLVEDMQRQWAGLVEK 20 (26)
T ss_dssp CCTTHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 5888999999998888763
No 358
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=20.03 E-value=47 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=32.0
Q ss_pred hhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCC
Q 014910 358 IMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKE 407 (416)
Q Consensus 358 imK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~ 407 (416)
+......++..+|-.. +..+...+-+.|..|.++|||++...
T Consensus 30 l~~~~~~~t~~ela~~--------l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 30 MVEIEKPITSEELADI--------FKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp HHHHCSCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHcCCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 3344666777777654 34688889999999999999999753
No 359
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.00 E-value=93 Score=27.23 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=34.1
Q ss_pred hhhCCCCcCHHHHHHHcCCCHHHHHHHHHhhhcccceeeecCC
Q 014910 260 LFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEP 302 (416)
Q Consensus 260 ~Fn~~~~~t~~ei~~~~~i~~~~l~~~L~~L~~~k~~iL~~~~ 302 (416)
.+..++.++..+|++.+|++...+.++|..|.. .+++...|
T Consensus 43 ~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~--~Glv~~~~ 83 (237)
T 3c7j_A 43 SLPSGTALRQQELATLFGVSRMPVREALRQLEA--QSLLRVET 83 (237)
T ss_dssp SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEET
T ss_pred CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEeC
Confidence 456677899999999999999999999999963 47776543
No 360
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=20.00 E-value=82 Score=25.69 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=45.0
Q ss_pred ceeeeehhccCCCCChhHHHHHHHHHhccCCCCChHHHHHHHHhhhhhccccccCCCCCceEec
Q 014910 352 DAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYL 415 (416)
Q Consensus 352 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 415 (416)
++.|.+++++++..+..||.....++ -|..+...|.+-|..| +.++.-..+ +.|.|.
T Consensus 7 ~~~I~~li~~~~~~tq~eL~~~L~~~---G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~ 63 (149)
T 1b4a_A 7 HIKIREIIMSNDIETQDELVDRLREA---GFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYS 63 (149)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHT---TCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEE
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHc---CCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEE
Confidence 56788899999999999999988764 5888988888777666 677765544 678885
Done!