Query 014913
Match_columns 416
No_of_seqs 285 out of 2402
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 01:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 4.4E-29 9.6E-34 274.7 30.4 282 94-398 11-312 (2102)
2 PLN03200 cellulose synthase-in 100.0 5.3E-29 1.2E-33 274.1 30.0 280 96-400 446-766 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.4E-27 3.1E-32 232.2 24.7 281 95-398 108-393 (514)
4 KOG4224 Armadillo repeat prote 100.0 7.6E-28 1.6E-32 220.1 19.3 277 96-398 167-446 (550)
5 KOG4224 Armadillo repeat prote 100.0 2.5E-27 5.4E-32 216.7 19.2 275 97-398 127-405 (550)
6 KOG0166 Karyopherin (importin) 99.9 3.7E-25 7.9E-30 215.4 23.8 309 69-399 127-437 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 1.4E-24 3E-29 197.3 18.2 310 66-398 129-443 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 1E-24 2.2E-29 198.2 16.9 288 92-404 110-404 (526)
9 PF05804 KAP: Kinesin-associat 99.8 1.4E-17 3E-22 171.1 27.0 257 109-397 263-519 (708)
10 KOG2122 Beta-catenin-binding p 99.8 2.5E-18 5.5E-23 179.3 16.6 276 113-397 316-601 (2195)
11 PF04564 U-box: U-box domain; 99.8 1.7E-19 3.6E-24 133.2 5.2 72 6-79 1-72 (73)
12 PF05804 KAP: Kinesin-associat 99.8 3.6E-17 7.7E-22 168.1 23.7 218 166-400 263-481 (708)
13 KOG4199 Uncharacterized conser 99.7 2.8E-15 6.2E-20 136.8 24.3 282 94-397 143-443 (461)
14 KOG1048 Neural adherens juncti 99.7 3.8E-16 8.1E-21 157.3 18.7 287 97-403 234-600 (717)
15 smart00504 Ubox Modified RING 99.7 1.2E-16 2.6E-21 115.1 5.6 63 9-74 1-63 (63)
16 PF04826 Arm_2: Armadillo-like 99.7 1.9E-14 4.1E-19 131.9 21.0 239 93-363 9-252 (254)
17 KOG1048 Neural adherens juncti 99.6 3.6E-14 7.8E-19 143.1 22.1 297 96-399 275-685 (717)
18 PF04826 Arm_2: Armadillo-like 99.6 3.2E-14 7E-19 130.4 19.9 201 194-405 11-212 (254)
19 KOG4199 Uncharacterized conser 99.5 2.1E-11 4.6E-16 111.7 23.9 269 109-400 121-405 (461)
20 PF15227 zf-C3HC4_4: zinc fing 99.5 2.3E-14 4.9E-19 93.1 3.0 40 12-51 1-42 (42)
21 KOG2122 Beta-catenin-binding p 99.4 1.4E-12 3E-17 137.2 15.2 228 110-357 366-605 (2195)
22 PF10508 Proteasom_PSMB: Prote 99.4 4.7E-11 1E-15 121.2 25.6 275 96-397 77-365 (503)
23 cd00020 ARM Armadillo/beta-cat 99.4 8.4E-12 1.8E-16 101.5 12.0 114 194-311 6-120 (120)
24 cd00020 ARM Armadillo/beta-cat 99.4 1.1E-11 2.4E-16 100.9 12.2 114 236-353 5-120 (120)
25 PF10508 Proteasom_PSMB: Prote 99.3 2.5E-10 5.3E-15 116.0 23.0 253 96-380 3-255 (503)
26 KOG4500 Rho/Rac GTPase guanine 99.3 5.6E-10 1.2E-14 105.6 20.9 274 116-403 244-524 (604)
27 TIGR00599 rad18 DNA repair pro 99.3 3.5E-12 7.6E-17 122.6 6.2 71 5-78 22-92 (397)
28 PLN03208 E3 ubiquitin-protein 99.3 3.2E-12 7E-17 109.6 4.6 61 4-65 13-87 (193)
29 PF03224 V-ATPase_H_N: V-ATPas 99.2 7.2E-10 1.6E-14 106.1 19.6 236 137-390 55-306 (312)
30 PRK09687 putative lyase; Provi 99.2 2.7E-09 5.9E-14 100.0 20.7 175 165-394 104-278 (280)
31 KOG0287 Postreplication repair 99.1 1.6E-11 3.4E-16 111.7 2.0 69 7-78 21-89 (442)
32 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.7E-11 1E-15 76.7 3.1 38 12-51 1-39 (39)
33 KOG0946 ER-Golgi vesicle-tethe 99.1 4.3E-08 9.4E-13 99.0 25.3 292 87-398 13-346 (970)
34 KOG1222 Kinesin associated pro 99.1 7.3E-09 1.6E-13 99.3 18.8 253 101-379 309-601 (791)
35 PF13445 zf-RING_UBOX: RING-ty 99.1 4.6E-11 9.9E-16 77.4 2.6 37 12-49 1-43 (43)
36 KOG4500 Rho/Rac GTPase guanine 99.1 1.5E-08 3.3E-13 96.0 20.0 292 93-397 84-389 (604)
37 PF00097 zf-C3HC4: Zinc finger 99.0 2.5E-10 5.4E-15 74.3 3.4 40 12-51 1-41 (41)
38 PF14835 zf-RING_6: zf-RING of 99.0 1.2E-10 2.7E-15 80.4 1.0 59 8-71 6-65 (65)
39 KOG0823 Predicted E3 ubiquitin 99.0 2.8E-10 6.2E-15 99.3 3.0 56 8-64 46-102 (230)
40 KOG1222 Kinesin associated pro 99.0 1.9E-07 4.2E-12 89.8 21.6 278 88-397 252-533 (791)
41 PF03224 V-ATPase_H_N: V-ATPas 98.9 2.1E-08 4.5E-13 96.0 15.4 217 97-335 59-293 (312)
42 KOG2160 Armadillo/beta-catenin 98.9 4.4E-08 9.5E-13 91.7 16.4 188 165-355 96-284 (342)
43 COG5432 RAD18 RING-finger-cont 98.9 4.5E-10 9.7E-15 100.2 3.0 67 8-77 24-90 (391)
44 PRK09687 putative lyase; Provi 98.9 8E-08 1.7E-12 90.1 17.5 96 138-268 24-120 (280)
45 PRK13800 putative oxidoreducta 98.9 2.1E-07 4.5E-12 101.3 23.1 226 94-396 619-865 (897)
46 PF11789 zf-Nse: Zinc-finger o 98.9 5.2E-10 1.1E-14 77.5 1.8 44 8-51 10-54 (57)
47 KOG0168 Putative ubiquitin fus 98.9 2E-07 4.4E-12 94.9 20.9 257 96-379 167-437 (1051)
48 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.3E-09 2.8E-14 74.1 3.5 47 8-56 1-48 (50)
49 cd00256 VATPase_H VATPase_H, r 98.9 1.7E-06 3.6E-11 84.9 25.9 245 137-398 53-308 (429)
50 KOG0320 Predicted E3 ubiquitin 98.9 1.4E-09 3.1E-14 90.7 3.4 51 8-61 130-182 (187)
51 KOG0317 Predicted E3 ubiquitin 98.8 2.2E-09 4.8E-14 96.6 3.5 51 7-60 237-287 (293)
52 KOG2160 Armadillo/beta-catenin 98.8 4.1E-07 8.8E-12 85.3 18.2 188 108-315 96-286 (342)
53 PHA02929 N1R/p28-like protein; 98.8 3.7E-09 8E-14 95.0 4.3 49 6-56 171-227 (238)
54 PF13639 zf-RING_2: Ring finge 98.8 2.6E-09 5.7E-14 70.5 2.0 40 11-52 2-44 (44)
55 PRK13800 putative oxidoreducta 98.8 2E-06 4.4E-11 93.7 24.2 228 95-394 651-895 (897)
56 KOG0168 Putative ubiquitin fus 98.7 6.9E-07 1.5E-11 91.2 18.8 203 165-378 181-390 (1051)
57 cd00162 RING RING-finger (Real 98.7 2.1E-08 4.5E-13 66.3 3.9 43 11-54 1-44 (45)
58 cd00256 VATPase_H VATPase_H, r 98.6 1.2E-05 2.7E-10 78.9 23.5 278 98-397 103-424 (429)
59 smart00184 RING Ring finger. E 98.6 3.8E-08 8.2E-13 62.7 3.8 39 12-51 1-39 (39)
60 KOG2177 Predicted E3 ubiquitin 98.6 2.2E-08 4.8E-13 96.2 3.8 69 6-79 10-78 (386)
61 KOG4646 Uncharacterized conser 98.6 1.2E-06 2.5E-11 70.7 11.5 135 238-377 16-150 (173)
62 KOG4646 Uncharacterized conser 98.6 9.3E-07 2E-11 71.2 10.7 129 197-334 17-147 (173)
63 PF14634 zf-RING_5: zinc-RING 98.5 6.8E-08 1.5E-12 63.6 3.3 41 11-53 1-44 (44)
64 PHA02926 zinc finger-like prot 98.5 8.3E-08 1.8E-12 83.4 3.9 51 6-56 167-230 (242)
65 TIGR00570 cdk7 CDK-activating 98.5 1.4E-07 3.1E-12 87.2 5.7 51 8-60 2-57 (309)
66 PF01602 Adaptin_N: Adaptin N 98.5 2.5E-05 5.4E-10 80.4 22.6 245 107-400 126-371 (526)
67 PF05536 Neurochondrin: Neuroc 98.4 3.7E-05 8.1E-10 78.7 21.8 238 139-399 7-262 (543)
68 PF01602 Adaptin_N: Adaptin N 98.4 6.9E-05 1.5E-09 77.1 23.9 276 62-398 53-333 (526)
69 COG5574 PEX10 RING-finger-cont 98.4 1.4E-07 3.1E-12 84.0 2.5 48 8-56 214-262 (271)
70 KOG1293 Proteins containing ar 98.4 2.5E-05 5.5E-10 78.2 17.8 251 107-380 389-655 (678)
71 KOG0978 E3 ubiquitin ligase in 98.4 9.4E-08 2E-12 97.2 0.8 54 6-61 640-693 (698)
72 KOG2171 Karyopherin (importin) 98.4 0.00012 2.7E-09 77.8 23.6 275 108-399 262-550 (1075)
73 COG5222 Uncharacterized conser 98.4 5.2E-07 1.1E-11 81.2 5.3 67 10-77 275-342 (427)
74 KOG2164 Predicted E3 ubiquitin 98.3 4.1E-07 9E-12 88.3 3.5 55 8-63 185-242 (513)
75 KOG2973 Uncharacterized conser 98.3 0.00022 4.7E-09 65.7 20.6 271 97-398 4-315 (353)
76 KOG0311 Predicted E3 ubiquitin 98.3 1.5E-07 3.2E-12 87.1 -0.1 71 6-77 40-111 (381)
77 KOG2660 Locus-specific chromos 98.3 4.2E-07 9.1E-12 83.6 2.8 65 7-74 13-82 (331)
78 PF05536 Neurochondrin: Neuroc 98.3 4.1E-05 8.8E-10 78.4 17.1 200 197-406 6-218 (543)
79 PF00514 Arm: Armadillo/beta-c 98.3 9.9E-07 2.1E-11 57.1 3.4 40 270-311 2-41 (41)
80 KOG0946 ER-Golgi vesicle-tethe 98.3 6.5E-05 1.4E-09 76.7 17.8 218 137-379 22-265 (970)
81 KOG2171 Karyopherin (importin) 98.2 0.00052 1.1E-08 73.2 24.6 276 110-398 174-504 (1075)
82 PF00514 Arm: Armadillo/beta-c 98.1 2.7E-06 5.8E-11 55.1 3.4 40 126-180 1-40 (41)
83 PF14664 RICTOR_N: Rapamycin-i 98.1 0.001 2.3E-08 64.8 22.7 270 107-398 37-364 (371)
84 KOG2879 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 77.1 3.0 49 8-56 238-287 (298)
85 TIGR02270 conserved hypothetic 98.1 0.00049 1.1E-08 67.9 20.3 220 96-398 54-296 (410)
86 KOG3678 SARM protein (with ste 98.1 0.00019 4.1E-09 69.4 16.5 246 129-399 172-453 (832)
87 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0046 1E-07 59.5 25.5 244 137-396 65-319 (442)
88 PF12678 zf-rbx1: RING-H2 zinc 98.1 3.3E-06 7.2E-11 62.1 3.6 39 12-52 22-73 (73)
89 KOG1293 Proteins containing ar 98.1 5.3E-05 1.2E-09 76.0 13.0 145 165-314 390-536 (678)
90 KOG4159 Predicted E3 ubiquitin 98.1 2.5E-06 5.5E-11 82.5 3.3 71 4-77 79-154 (398)
91 PTZ00429 beta-adaptin; Provisi 98.0 0.0013 2.8E-08 69.6 23.4 214 95-350 31-245 (746)
92 KOG1789 Endocytosis protein RM 98.0 0.0026 5.6E-08 67.3 24.4 247 107-379 1784-2141(2235)
93 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0017 3.6E-08 63.5 21.8 254 116-398 4-269 (371)
94 PF13646 HEAT_2: HEAT repeats; 98.0 6.7E-05 1.4E-09 57.2 9.6 87 198-307 1-88 (88)
95 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0041 8.8E-08 59.8 21.9 225 165-397 170-437 (442)
96 KOG2973 Uncharacterized conser 97.9 0.00029 6.3E-09 64.8 13.5 187 198-395 5-201 (353)
97 KOG0297 TNF receptor-associate 97.9 7.3E-06 1.6E-10 80.4 3.5 71 5-77 17-88 (391)
98 KOG4642 Chaperone-dependent E3 97.9 1.1E-05 2.3E-10 71.5 4.1 75 3-79 205-279 (284)
99 KOG1813 Predicted E3 ubiquitin 97.8 7.8E-06 1.7E-10 74.1 2.2 54 10-67 242-295 (313)
100 PF13646 HEAT_2: HEAT repeats; 97.8 0.0001 2.2E-09 56.2 8.1 88 139-264 1-88 (88)
101 PTZ00429 beta-adaptin; Provisi 97.8 0.0093 2E-07 63.3 25.2 209 165-398 118-326 (746)
102 KOG4413 26S proteasome regulat 97.8 0.013 2.8E-07 54.7 22.4 271 107-399 94-378 (524)
103 KOG3678 SARM protein (with ste 97.7 0.00033 7.2E-09 67.8 11.5 173 196-377 180-357 (832)
104 PF12348 CLASP_N: CLASP N term 97.7 0.0005 1.1E-08 62.6 12.3 177 108-312 20-207 (228)
105 COG5369 Uncharacterized conser 97.7 0.00084 1.8E-08 66.1 14.0 199 111-329 405-613 (743)
106 TIGR02270 conserved hypothetic 97.7 0.012 2.5E-07 58.3 21.3 196 137-398 54-267 (410)
107 KOG2734 Uncharacterized conser 97.6 0.07 1.5E-06 51.8 25.0 243 115-378 104-371 (536)
108 smart00185 ARM Armadillo/beta- 97.6 0.00011 2.5E-09 47.1 4.4 40 270-311 2-41 (41)
109 KOG0289 mRNA splicing factor [ 97.6 0.00015 3.3E-09 69.2 6.8 51 10-63 1-52 (506)
110 PF12348 CLASP_N: CLASP N term 97.6 0.0016 3.6E-08 59.2 13.5 188 206-402 17-210 (228)
111 COG5152 Uncharacterized conser 97.6 2.3E-05 5E-10 66.6 1.0 45 10-56 197-241 (259)
112 KOG2023 Nuclear transport rece 97.6 0.0041 9E-08 62.9 16.7 280 95-404 127-469 (885)
113 PF10165 Ric8: Guanine nucleot 97.6 0.011 2.4E-07 59.4 20.1 235 108-355 45-339 (446)
114 PF10165 Ric8: Guanine nucleot 97.5 0.012 2.6E-07 59.2 19.7 273 115-398 1-337 (446)
115 KOG0824 Predicted E3 ubiquitin 97.5 4.2E-05 9E-10 69.6 1.9 45 11-56 9-53 (324)
116 PF12861 zf-Apc11: Anaphase-pr 97.5 0.00012 2.5E-09 54.5 3.8 46 11-56 34-82 (85)
117 KOG2042 Ubiquitin fusion degra 97.5 0.00014 3.1E-09 76.7 5.7 73 4-79 865-938 (943)
118 smart00185 ARM Armadillo/beta- 97.4 0.00024 5.2E-09 45.5 4.1 38 128-180 3-40 (41)
119 KOG0826 Predicted E3 ubiquitin 97.4 0.00012 2.6E-09 67.4 3.5 49 6-56 297-346 (357)
120 COG1413 FOG: HEAT repeat [Ener 97.4 0.029 6.2E-07 54.2 20.3 155 96-313 43-211 (335)
121 KOG1002 Nucleotide excision re 97.4 7.2E-05 1.6E-09 72.8 2.0 49 8-56 535-586 (791)
122 PF11841 DUF3361: Domain of un 97.4 0.0051 1.1E-07 51.9 12.5 122 236-357 9-135 (160)
123 KOG0802 E3 ubiquitin ligase [P 97.4 8E-05 1.7E-09 76.6 2.0 46 9-56 291-341 (543)
124 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00046 9.9E-09 47.6 5.2 55 210-266 1-55 (55)
125 COG5243 HRD1 HRD ubiquitin lig 97.3 0.00014 3.1E-09 67.8 2.9 48 7-56 285-345 (491)
126 KOG3039 Uncharacterized conser 97.3 0.00017 3.6E-09 63.7 2.8 53 8-63 220-276 (303)
127 KOG1517 Guanine nucleotide bin 97.3 0.0099 2.1E-07 63.1 16.0 196 96-312 472-672 (1387)
128 KOG4367 Predicted Zn-finger pr 97.3 9.6E-05 2.1E-09 70.2 1.4 36 7-42 2-37 (699)
129 COG5369 Uncharacterized conser 97.3 0.0097 2.1E-07 58.9 14.9 185 175-366 412-605 (743)
130 COG1413 FOG: HEAT repeat [Ener 97.2 0.027 5.9E-07 54.4 17.2 183 137-394 43-238 (335)
131 KOG1789 Endocytosis protein RM 97.1 0.0088 1.9E-07 63.5 13.7 156 254-415 1740-1900(2235)
132 KOG0212 Uncharacterized conser 97.0 0.091 2E-06 52.6 19.1 252 108-398 180-444 (675)
133 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0011 2.5E-08 45.6 4.5 55 253-309 1-55 (55)
134 KOG2023 Nuclear transport rece 97.0 0.013 2.8E-07 59.5 13.3 174 137-333 128-308 (885)
135 KOG1242 Protein containing ada 97.0 0.034 7.4E-07 56.1 16.2 186 197-398 255-444 (569)
136 KOG4628 Predicted E3 ubiquitin 97.0 0.00047 1E-08 65.3 2.8 46 10-56 230-278 (348)
137 KOG1241 Karyopherin (importin) 97.0 0.0074 1.6E-07 62.0 11.3 157 137-311 319-477 (859)
138 KOG1241 Karyopherin (importin) 97.0 0.051 1.1E-06 56.1 17.1 255 108-399 187-478 (859)
139 KOG3036 Protein involved in ce 96.9 0.28 6.1E-06 44.3 22.2 248 93-353 23-291 (293)
140 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.00066 1.4E-08 63.1 3.4 51 7-61 111-165 (260)
141 KOG4413 26S proteasome regulat 96.9 0.073 1.6E-06 49.9 16.3 237 95-354 127-378 (524)
142 KOG1242 Protein containing ada 96.9 0.2 4.3E-06 50.8 20.5 250 110-401 149-404 (569)
143 PF09759 Atx10homo_assoc: Spin 96.9 0.0031 6.8E-08 49.2 6.3 67 112-191 3-69 (102)
144 KOG0804 Cytoplasmic Zn-finger 96.8 0.00052 1.1E-08 65.9 1.7 43 10-56 176-222 (493)
145 KOG2259 Uncharacterized conser 96.8 0.019 4.1E-07 58.2 12.3 257 93-397 194-474 (823)
146 KOG0213 Splicing factor 3b, su 96.7 0.071 1.5E-06 55.0 16.0 256 102-398 805-1065(1172)
147 KOG2734 Uncharacterized conser 96.7 0.22 4.7E-06 48.6 18.3 219 170-394 102-342 (536)
148 KOG1061 Vesicle coat complex A 96.7 0.044 9.6E-07 56.7 14.5 266 99-403 124-420 (734)
149 PF11841 DUF3361: Domain of un 96.7 0.019 4E-07 48.6 9.9 126 130-268 4-131 (160)
150 PF09759 Atx10homo_assoc: Spin 96.7 0.0075 1.6E-07 47.0 6.7 67 255-321 2-70 (102)
151 COG5181 HSH155 U2 snRNP splice 96.6 0.1 2.2E-06 52.8 16.1 257 100-398 608-870 (975)
152 COG5231 VMA13 Vacuolar H+-ATPa 96.6 0.15 3.3E-06 47.7 16.1 226 166-396 163-426 (432)
153 KOG3036 Protein involved in ce 96.6 0.17 3.6E-06 45.6 15.8 155 110-278 94-257 (293)
154 KOG1734 Predicted RING-contain 96.6 0.00052 1.1E-08 61.5 -0.2 49 8-56 223-281 (328)
155 KOG1062 Vesicle coat complex A 96.4 0.19 4.2E-06 52.4 17.0 241 107-399 306-582 (866)
156 PF05004 IFRD: Interferon-rela 96.4 0.65 1.4E-05 44.3 20.0 198 198-401 45-260 (309)
157 KOG1059 Vesicle coat complex A 96.4 1.1 2.5E-05 46.3 21.7 250 99-398 147-443 (877)
158 KOG0212 Uncharacterized conser 96.4 0.25 5.4E-06 49.6 16.6 223 165-398 180-406 (675)
159 KOG1645 RING-finger-containing 96.3 0.0018 4E-08 61.5 1.9 60 10-70 5-69 (463)
160 PF02891 zf-MIZ: MIZ/SP-RING z 96.3 0.0046 9.9E-08 41.6 3.2 46 9-54 2-50 (50)
161 PF05004 IFRD: Interferon-rela 96.3 0.45 9.8E-06 45.4 17.9 189 98-309 45-255 (309)
162 KOG3039 Uncharacterized conser 96.2 0.0029 6.2E-08 56.1 2.5 37 6-42 40-76 (303)
163 COG5113 UFD2 Ubiquitin fusion 96.2 0.0081 1.8E-07 60.3 5.7 73 4-79 849-922 (929)
164 KOG2817 Predicted E3 ubiquitin 96.2 0.0034 7.4E-08 59.8 2.9 42 9-51 334-380 (394)
165 PF04078 Rcd1: Cell differenti 96.2 0.26 5.7E-06 45.1 14.8 212 101-321 2-228 (262)
166 KOG0213 Splicing factor 3b, su 96.1 0.039 8.4E-07 56.8 10.1 150 197-355 800-956 (1172)
167 smart00744 RINGv The RING-vari 96.1 0.0084 1.8E-07 40.2 3.6 42 11-52 1-49 (49)
168 KOG4151 Myosin assembly protei 96.1 0.16 3.6E-06 52.8 14.5 222 127-376 494-720 (748)
169 KOG4172 Predicted E3 ubiquitin 96.1 0.0016 3.4E-08 43.4 -0.0 46 10-56 8-54 (62)
170 COG5215 KAP95 Karyopherin (imp 96.1 0.65 1.4E-05 46.9 17.8 288 96-408 133-449 (858)
171 COG5194 APC11 Component of SCF 96.0 0.0066 1.4E-07 44.0 3.1 44 11-56 33-81 (88)
172 KOG1824 TATA-binding protein-i 96.0 0.6 1.3E-05 49.8 18.2 264 108-408 491-773 (1233)
173 PF12755 Vac14_Fab1_bd: Vacuol 96.0 0.049 1.1E-06 42.3 8.1 91 215-310 5-95 (97)
174 KOG2979 Protein involved in DN 96.0 0.006 1.3E-07 54.8 3.4 46 9-54 176-222 (262)
175 COG5096 Vesicle coat complex, 96.0 0.27 5.8E-06 51.9 15.7 127 166-311 69-195 (757)
176 PF04063 DUF383: Domain of unk 96.0 0.052 1.1E-06 47.8 9.2 125 166-291 9-158 (192)
177 KOG1039 Predicted E3 ubiquitin 95.9 0.0047 1E-07 58.9 2.3 50 7-56 159-221 (344)
178 PF14570 zf-RING_4: RING/Ubox 95.9 0.006 1.3E-07 40.2 2.1 43 12-55 1-47 (48)
179 KOG3800 Predicted E3 ubiquitin 95.9 0.0058 1.3E-07 55.8 2.7 45 11-56 2-51 (300)
180 COG5181 HSH155 U2 snRNP splice 95.8 0.052 1.1E-06 54.8 9.0 148 197-355 605-761 (975)
181 KOG3113 Uncharacterized conser 95.7 0.0088 1.9E-07 53.3 3.1 54 7-64 109-166 (293)
182 PF12717 Cnd1: non-SMC mitotic 95.7 0.5 1.1E-05 41.2 14.2 110 166-291 2-112 (178)
183 KOG4692 Predicted E3 ubiquitin 95.6 0.0072 1.6E-07 56.4 2.3 48 7-56 420-467 (489)
184 PF11698 V-ATPase_H_C: V-ATPas 95.5 0.049 1.1E-06 43.7 6.5 70 196-266 43-113 (119)
185 KOG1062 Vesicle coat complex A 95.5 3.4 7.3E-05 43.5 21.0 223 107-354 154-415 (866)
186 PF12717 Cnd1: non-SMC mitotic 95.5 1 2.2E-05 39.2 15.5 112 108-249 1-112 (178)
187 KOG2999 Regulator of Rac1, req 95.5 0.46 1E-05 47.6 14.3 167 197-366 84-254 (713)
188 KOG1517 Guanine nucleotide bin 95.5 0.33 7.1E-06 52.2 13.9 201 194-398 511-732 (1387)
189 PF12755 Vac14_Fab1_bd: Vacuol 95.5 0.074 1.6E-06 41.3 7.2 68 196-266 27-94 (97)
190 KOG2259 Uncharacterized conser 95.3 0.6 1.3E-05 47.9 14.6 150 186-357 366-515 (823)
191 KOG1240 Protein kinase contain 95.3 0.26 5.5E-06 53.7 12.6 232 98-357 464-729 (1431)
192 KOG1248 Uncharacterized conser 95.3 1 2.3E-05 49.1 17.2 220 165-398 667-898 (1176)
193 PF13764 E3_UbLigase_R4: E3 ub 95.3 3.6 7.8E-05 44.3 21.1 245 97-353 118-406 (802)
194 PF06371 Drf_GBD: Diaphanous G 95.2 0.24 5.2E-06 43.3 10.8 120 96-224 66-186 (187)
195 KOG1785 Tyrosine kinase negati 95.1 0.0099 2.1E-07 56.4 1.5 46 11-56 371-416 (563)
196 PF04063 DUF383: Domain of unk 95.1 0.12 2.6E-06 45.5 8.3 119 211-331 10-154 (192)
197 PF12719 Cnd3: Nuclear condens 95.1 1.5 3.2E-05 41.7 16.4 178 165-354 40-234 (298)
198 KOG1077 Vesicle coat complex A 95.1 3.4 7.3E-05 43.0 19.1 250 109-398 162-433 (938)
199 KOG1059 Vesicle coat complex A 95.0 5.4 0.00012 41.7 22.3 239 114-398 128-402 (877)
200 KOG0825 PHD Zn-finger protein 95.0 0.0049 1.1E-07 63.1 -0.8 45 10-56 124-171 (1134)
201 PF08045 CDC14: Cell division 95.0 0.35 7.5E-06 44.5 11.1 100 211-310 106-206 (257)
202 COG5240 SEC21 Vesicle coat com 95.0 4.9 0.00011 40.9 22.0 250 109-398 278-555 (898)
203 COG5220 TFB3 Cdk activating ki 94.9 0.0077 1.7E-07 53.2 0.2 55 1-56 2-64 (314)
204 PF14668 RICTOR_V: Rapamycin-i 94.8 0.17 3.8E-06 36.9 7.0 66 255-321 3-68 (73)
205 KOG1943 Beta-tubulin folding c 94.7 2.5 5.5E-05 45.9 18.0 222 97-345 342-603 (1133)
206 KOG1077 Vesicle coat complex A 94.6 6.9 0.00015 40.8 20.1 264 100-398 115-398 (938)
207 PF11698 V-ATPase_H_C: V-ATPas 94.5 0.16 3.5E-06 40.8 6.7 72 94-180 41-114 (119)
208 COG5096 Vesicle coat complex, 94.5 0.73 1.6E-05 48.7 13.3 92 165-269 105-196 (757)
209 KOG1001 Helicase-like transcri 94.4 0.0094 2E-07 62.4 -0.5 46 10-56 455-500 (674)
210 KOG2611 Neurochondrin/leucine- 94.4 1.5 3.2E-05 43.5 14.3 150 197-352 12-181 (698)
211 PF04078 Rcd1: Cell differenti 94.4 0.48 1E-05 43.4 10.3 153 112-278 67-228 (262)
212 COG5175 MOT2 Transcriptional r 94.4 0.029 6.3E-07 52.1 2.6 45 11-56 16-64 (480)
213 PF06371 Drf_GBD: Diaphanous G 94.3 0.14 3.1E-06 44.8 7.0 112 238-352 66-186 (187)
214 PF11793 FANCL_C: FANCL C-term 94.3 0.014 3.1E-07 42.3 0.4 48 9-56 2-66 (70)
215 PF11701 UNC45-central: Myosin 94.3 0.41 9E-06 40.8 9.4 146 197-349 4-155 (157)
216 PF02985 HEAT: HEAT repeat; I 94.2 0.088 1.9E-06 31.4 3.7 29 198-226 2-30 (31)
217 PF05290 Baculo_IE-1: Baculovi 94.2 0.049 1.1E-06 43.9 3.2 49 8-56 79-132 (140)
218 PF14447 Prok-RING_4: Prokaryo 94.2 0.026 5.5E-07 38.2 1.3 44 9-56 7-50 (55)
219 COG5109 Uncharacterized conser 94.1 0.032 7E-07 51.4 2.3 45 8-52 335-383 (396)
220 KOG1824 TATA-binding protein-i 94.0 7.5 0.00016 42.0 19.2 183 96-307 568-757 (1233)
221 PF13764 E3_UbLigase_R4: E3 ub 93.9 11 0.00023 40.8 20.7 247 132-398 112-406 (802)
222 PF02985 HEAT: HEAT repeat; I 93.9 0.08 1.7E-06 31.5 3.0 29 239-268 1-29 (31)
223 KOG2999 Regulator of Rac1, req 93.8 1.2 2.7E-05 44.7 12.7 154 240-398 85-242 (713)
224 PF12460 MMS19_C: RNAPII trans 93.7 3.6 7.8E-05 41.1 16.4 110 197-313 272-396 (415)
225 KOG4151 Myosin assembly protei 93.7 0.38 8.2E-06 50.3 9.3 171 98-285 543-717 (748)
226 COG5215 KAP95 Karyopherin (imp 93.6 2.3 4.9E-05 43.2 14.0 181 165-354 234-438 (858)
227 KOG1493 Anaphase-promoting com 93.5 0.029 6.3E-07 40.3 0.8 49 8-56 30-81 (84)
228 KOG1060 Vesicle coat complex A 93.5 9.6 0.00021 40.3 18.7 206 100-353 39-246 (968)
229 COG5627 MMS21 DNA repair prote 93.4 0.079 1.7E-06 46.9 3.4 57 10-67 190-249 (275)
230 PF07814 WAPL: Wings apart-lik 92.9 6.4 0.00014 38.5 16.4 245 96-368 21-312 (361)
231 KOG2274 Predicted importin 9 [ 92.9 3.9 8.6E-05 43.6 15.2 230 165-407 463-705 (1005)
232 PF06025 DUF913: Domain of Unk 92.9 10 0.00023 37.2 20.8 197 114-312 3-233 (379)
233 PF11701 UNC45-central: Myosin 92.7 0.52 1.1E-05 40.2 7.5 135 165-308 18-156 (157)
234 KOG0827 Predicted E3 ubiquitin 92.7 0.076 1.6E-06 50.5 2.5 50 7-56 2-56 (465)
235 KOG0567 HEAT repeat-containing 92.7 8.1 0.00018 35.5 18.1 201 135-398 65-280 (289)
236 KOG4185 Predicted E3 ubiquitin 92.4 0.12 2.7E-06 49.0 3.5 64 10-74 4-77 (296)
237 KOG2930 SCF ubiquitin ligase, 92.2 0.1 2.3E-06 39.9 2.2 28 26-55 80-107 (114)
238 KOG0301 Phospholipase A2-activ 92.2 6.4 0.00014 40.7 15.2 163 108-292 557-728 (745)
239 cd03569 VHS_Hrs_Vps27p VHS dom 92.2 0.98 2.1E-05 37.8 8.3 82 324-406 41-122 (142)
240 PF05918 API5: Apoptosis inhib 92.0 6.4 0.00014 40.4 15.3 135 95-265 22-159 (556)
241 KOG1061 Vesicle coat complex A 92.0 1.2 2.6E-05 46.5 10.2 144 137-314 49-192 (734)
242 KOG3161 Predicted E3 ubiquitin 92.0 0.063 1.4E-06 54.2 1.0 39 7-49 9-51 (861)
243 PF08045 CDC14: Cell division 92.0 1.3 2.8E-05 40.7 9.4 98 111-224 107-206 (257)
244 KOG4265 Predicted E3 ubiquitin 91.9 0.11 2.4E-06 49.2 2.4 46 9-56 290-336 (349)
245 PF08167 RIX1: rRNA processing 91.8 1.3 2.9E-05 38.0 9.0 111 197-311 26-143 (165)
246 PF12460 MMS19_C: RNAPII trans 91.8 3.9 8.3E-05 40.8 13.6 199 197-414 190-408 (415)
247 cd03568 VHS_STAM VHS domain fa 91.7 1.1 2.5E-05 37.4 8.2 81 324-405 37-117 (144)
248 KOG0567 HEAT repeat-containing 91.7 11 0.00023 34.8 15.9 93 238-352 187-279 (289)
249 KOG1967 DNA repair/transcripti 91.7 2 4.4E-05 45.8 11.4 187 98-305 817-1018(1030)
250 KOG1058 Vesicle coat complex C 91.5 9.1 0.0002 40.3 15.5 53 341-404 376-428 (948)
251 cd03561 VHS VHS domain family; 91.4 1.7 3.6E-05 35.9 8.8 82 325-407 38-122 (133)
252 PF12719 Cnd3: Nuclear condens 91.3 7.3 0.00016 36.9 14.3 169 197-380 27-209 (298)
253 PF05918 API5: Apoptosis inhib 91.3 3.2 6.9E-05 42.6 12.2 89 208-309 34-123 (556)
254 PF08324 PUL: PUL domain; Int 91.3 4.2 9.1E-05 37.8 12.5 164 166-331 77-250 (268)
255 PF12031 DUF3518: Domain of un 91.2 0.78 1.7E-05 41.4 7.0 83 253-336 138-228 (257)
256 KOG2611 Neurochondrin/leucine- 91.2 18 0.00038 36.3 19.2 174 169-350 28-222 (698)
257 KOG4362 Transcriptional regula 91.1 0.08 1.7E-06 54.6 0.7 69 7-76 19-88 (684)
258 PF12031 DUF3518: Domain of un 91.1 0.5 1.1E-05 42.6 5.6 83 110-208 139-228 (257)
259 PF08569 Mo25: Mo25-like; Int 90.9 16 0.00034 35.3 16.1 213 131-366 70-297 (335)
260 KOG4535 HEAT and armadillo rep 90.8 0.35 7.6E-06 47.7 4.6 186 167-355 406-605 (728)
261 smart00288 VHS Domain present 90.5 1.8 3.9E-05 35.7 8.2 82 325-407 38-120 (133)
262 KOG4535 HEAT and armadillo rep 90.4 0.44 9.6E-06 47.0 5.0 180 212-395 407-600 (728)
263 PF12530 DUF3730: Protein of u 90.2 14 0.00031 33.6 17.9 128 165-311 14-151 (234)
264 KOG2025 Chromosome condensatio 90.1 27 0.00059 36.7 17.7 116 196-321 85-200 (892)
265 COG5209 RCD1 Uncharacterized p 89.7 5.6 0.00012 35.6 10.8 153 111-277 116-277 (315)
266 KOG1814 Predicted E3 ubiquitin 89.6 0.39 8.5E-06 46.3 3.8 35 8-42 183-220 (445)
267 KOG1058 Vesicle coat complex C 89.5 7 0.00015 41.1 12.8 231 97-356 204-466 (948)
268 KOG1943 Beta-tubulin folding c 89.5 8.7 0.00019 42.0 13.9 117 233-357 337-461 (1133)
269 KOG0211 Protein phosphatase 2A 89.3 29 0.00063 37.3 17.7 255 110-398 370-625 (759)
270 KOG4739 Uncharacterized protei 89.1 0.18 3.8E-06 45.3 1.1 49 11-64 5-55 (233)
271 KOG2274 Predicted importin 9 [ 88.9 36 0.00078 36.8 17.6 182 166-356 505-692 (1005)
272 PF00790 VHS: VHS domain; Int 88.8 1.7 3.7E-05 36.2 6.8 81 325-406 43-126 (140)
273 KOG1788 Uncharacterized conser 88.7 25 0.00055 38.7 16.3 257 116-398 663-982 (2799)
274 PF08324 PUL: PUL domain; Int 88.6 4 8.7E-05 37.9 10.0 190 98-302 65-265 (268)
275 COG5240 SEC21 Vesicle coat com 88.4 33 0.00071 35.3 16.2 71 197-271 265-335 (898)
276 PF10367 Vps39_2: Vacuolar sor 88.0 0.16 3.4E-06 40.1 0.1 34 4-37 73-108 (109)
277 KOG1820 Microtubule-associated 87.9 13 0.00028 40.2 14.1 176 107-311 265-443 (815)
278 cd03567 VHS_GGA VHS domain fam 87.8 3.8 8.3E-05 34.1 8.2 83 324-407 38-125 (139)
279 COG5218 YCG1 Chromosome conden 87.6 30 0.00066 35.6 15.5 114 280-406 91-204 (885)
280 KOG0298 DEAD box-containing he 87.6 0.15 3.2E-06 55.9 -0.5 47 7-55 1151-1198(1394)
281 PF14668 RICTOR_V: Rapamycin-i 87.4 1.8 3.9E-05 31.6 5.3 67 213-280 4-70 (73)
282 PF01347 Vitellogenin_N: Lipop 87.2 19 0.00041 37.9 15.2 104 197-312 432-554 (618)
283 KOG1941 Acetylcholine receptor 87.1 0.29 6.3E-06 46.7 1.3 46 9-54 365-414 (518)
284 KOG1248 Uncharacterized conser 86.9 15 0.00032 40.7 13.8 219 108-353 667-898 (1176)
285 COG5231 VMA13 Vacuolar H+-ATPa 86.8 29 0.00063 33.0 16.5 225 109-353 163-428 (432)
286 KOG0414 Chromosome condensatio 86.8 14 0.00031 40.9 13.5 144 196-355 919-1066(1251)
287 PF11865 DUF3385: Domain of un 86.0 11 0.00025 32.0 10.4 145 138-310 11-156 (160)
288 PF06025 DUF913: Domain of Unk 85.6 17 0.00037 35.8 12.8 113 108-235 122-242 (379)
289 KOG0883 Cyclophilin type, U bo 85.5 0.64 1.4E-05 44.4 2.6 34 9-42 40-73 (518)
290 PF08569 Mo25: Mo25-like; Int 85.4 37 0.0008 32.8 16.0 197 196-398 76-283 (335)
291 PHA02825 LAP/PHD finger-like p 85.3 1.2 2.6E-05 37.4 3.8 48 8-56 7-59 (162)
292 PRK14707 hypothetical protein; 85.3 92 0.002 37.3 21.8 237 88-350 197-442 (2710)
293 KOG1240 Protein kinase contain 85.1 43 0.00092 37.5 16.0 97 165-267 436-536 (1431)
294 PHA03096 p28-like protein; Pro 85.0 0.56 1.2E-05 43.9 2.0 43 10-52 179-230 (284)
295 PF05605 zf-Di19: Drought indu 84.9 0.48 1E-05 32.3 1.2 40 8-54 1-40 (54)
296 KOG0414 Chromosome condensatio 84.7 31 0.00068 38.3 14.9 129 107-267 935-1063(1251)
297 KOG3002 Zn finger protein [Gen 84.3 1.1 2.4E-05 42.3 3.7 62 7-77 46-108 (299)
298 PF08746 zf-RING-like: RING-li 84.2 1.1 2.4E-05 29.0 2.6 40 12-51 1-43 (43)
299 KOG1940 Zn-finger protein [Gen 84.0 0.67 1.4E-05 42.9 2.1 43 9-53 158-204 (276)
300 KOG1078 Vesicle coat complex C 83.4 68 0.0015 34.3 16.5 259 98-398 246-532 (865)
301 KOG0314 Predicted E3 ubiquitin 83.2 0.65 1.4E-05 45.9 1.7 71 4-77 214-287 (448)
302 PF14569 zf-UDP: Zinc-binding 83.2 1.8 4E-05 31.5 3.5 46 10-56 10-62 (80)
303 PF03854 zf-P11: P-11 zinc fin 83.0 0.44 9.5E-06 31.1 0.3 35 20-56 11-46 (50)
304 KOG1991 Nuclear transport rece 82.4 68 0.0015 35.1 16.0 164 113-292 390-559 (1010)
305 PF07191 zinc-ribbons_6: zinc- 82.2 0.11 2.4E-06 37.2 -2.9 41 9-56 1-41 (70)
306 KOG1060 Vesicle coat complex A 81.4 81 0.0018 33.8 17.8 208 140-400 38-248 (968)
307 COG3813 Uncharacterized protei 81.1 1.6 3.4E-05 31.2 2.5 39 24-67 24-62 (84)
308 PF11707 Npa1: Ribosome 60S bi 80.5 57 0.0012 31.4 16.3 157 139-314 58-240 (330)
309 PHA02862 5L protein; Provision 80.4 1.6 3.6E-05 35.8 2.8 45 11-56 4-53 (156)
310 KOG2025 Chromosome condensatio 80.1 5.8 0.00013 41.4 7.2 114 280-406 85-198 (892)
311 PF12530 DUF3730: Protein of u 79.7 48 0.001 30.1 16.7 135 99-267 3-150 (234)
312 cd03569 VHS_Hrs_Vps27p VHS dom 79.4 11 0.00024 31.5 7.6 73 196-268 41-114 (142)
313 KOG1820 Microtubule-associated 79.1 34 0.00073 37.2 12.8 187 167-378 268-458 (815)
314 KOG2114 Vacuolar assembly/sort 78.6 1.2 2.6E-05 47.0 1.9 41 10-55 841-882 (933)
315 cd03565 VHS_Tom1 VHS domain fa 78.2 14 0.00031 30.8 7.9 83 324-407 38-124 (141)
316 KOG1967 DNA repair/transcripti 78.1 14 0.0003 39.9 9.3 144 98-262 869-1018(1030)
317 PF14353 CpXC: CpXC protein 78.0 1.4 3E-05 36.1 1.8 48 9-56 1-49 (128)
318 PF07800 DUF1644: Protein of u 77.8 0.85 1.8E-05 38.2 0.5 20 8-27 1-20 (162)
319 KOG1812 Predicted E3 ubiquitin 77.7 1.9 4.1E-05 42.4 2.9 42 9-50 146-195 (384)
320 cd03561 VHS VHS domain family; 77.7 16 0.00034 30.0 8.0 75 196-270 37-114 (133)
321 KOG2062 26S proteasome regulat 77.2 34 0.00073 36.2 11.5 106 166-292 569-677 (929)
322 KOG2933 Uncharacterized conser 77.1 28 0.0006 32.9 10.0 111 197-313 89-201 (334)
323 KOG2137 Protein kinase [Signal 77.1 50 0.0011 34.8 12.8 131 238-379 389-519 (700)
324 PF14500 MMS19_N: Dos2-interac 77.0 63 0.0014 30.0 16.8 217 107-356 11-240 (262)
325 KOG3665 ZYG-1-like serine/thre 76.8 27 0.00059 37.4 11.4 176 118-332 494-675 (699)
326 KOG0825 PHD Zn-finger protein 76.7 1.9 4.2E-05 45.0 2.7 48 6-53 93-151 (1134)
327 PF14726 RTTN_N: Rotatin, an a 76.4 34 0.00073 26.6 9.1 72 233-307 25-96 (98)
328 KOG0211 Protein phosphatase 2A 75.3 75 0.0016 34.3 14.0 187 95-309 235-425 (759)
329 KOG4653 Uncharacterized conser 75.2 1.3E+02 0.0028 32.7 16.3 189 93-312 724-919 (982)
330 KOG0915 Uncharacterized conser 75.0 83 0.0018 36.3 14.4 223 165-398 1011-1265(1702)
331 KOG1991 Nuclear transport rece 74.7 1.4E+02 0.003 32.9 15.9 133 194-334 409-553 (1010)
332 PLN02195 cellulose synthase A 74.5 2.5 5.5E-05 45.8 3.0 45 11-56 8-59 (977)
333 PF09538 FYDLN_acid: Protein o 74.3 2.3 5E-05 33.6 2.0 37 1-56 1-37 (108)
334 PF06906 DUF1272: Protein of u 74.3 3 6.6E-05 28.3 2.3 31 22-56 22-52 (57)
335 COG5236 Uncharacterized conser 74.3 2.3 5.1E-05 40.0 2.3 49 7-55 59-107 (493)
336 PLN02189 cellulose synthase 74.2 2.7 5.8E-05 46.0 3.1 45 11-56 36-87 (1040)
337 KOG0301 Phospholipase A2-activ 73.8 67 0.0014 33.6 12.5 164 166-336 558-728 (745)
338 KOG4653 Uncharacterized conser 73.7 64 0.0014 34.9 12.6 69 198-268 729-797 (982)
339 KOG2062 26S proteasome regulat 73.5 43 0.00092 35.5 11.2 96 197-309 555-651 (929)
340 cd00350 rubredoxin_like Rubred 72.9 2.6 5.6E-05 25.5 1.6 10 45-54 17-26 (33)
341 KOG1020 Sister chromatid cohes 72.5 45 0.00098 38.2 11.7 142 137-310 816-959 (1692)
342 PF10571 UPF0547: Uncharacteri 72.4 2.1 4.6E-05 24.3 1.1 9 11-19 2-10 (26)
343 PF10272 Tmpp129: Putative tra 72.2 3 6.5E-05 40.3 2.7 32 25-56 304-351 (358)
344 smart00288 VHS Domain present 72.2 21 0.00045 29.3 7.4 73 196-268 37-111 (133)
345 KOG2933 Uncharacterized conser 72.1 44 0.00096 31.6 10.0 134 239-391 89-227 (334)
346 PF14446 Prok-RING_1: Prokaryo 71.8 3.7 8E-05 27.9 2.2 28 9-36 5-36 (54)
347 PRK14707 hypothetical protein; 71.1 2.5E+02 0.0053 34.1 23.4 219 93-334 370-593 (2710)
348 PF10363 DUF2435: Protein of u 70.9 19 0.0004 27.6 6.3 71 197-270 4-74 (92)
349 cd03568 VHS_STAM VHS domain fa 70.7 22 0.00049 29.7 7.3 74 196-269 37-111 (144)
350 PF11791 Aconitase_B_N: Aconit 70.6 15 0.00032 30.9 5.9 109 89-226 15-124 (154)
351 COG5218 YCG1 Chromosome conden 70.5 1.4E+02 0.003 31.1 16.9 119 187-319 86-204 (885)
352 PF10363 DUF2435: Protein of u 69.8 17 0.00037 27.8 5.8 70 96-182 3-73 (92)
353 COG5098 Chromosome condensatio 69.7 66 0.0014 34.0 11.4 152 237-396 239-413 (1128)
354 PF11865 DUF3385: Domain of un 69.6 40 0.00087 28.7 8.8 143 196-350 10-154 (160)
355 KOG3665 ZYG-1-like serine/thre 68.7 1.7E+02 0.0037 31.4 16.1 92 262-355 494-589 (699)
356 PF05883 Baculo_RING: Baculovi 68.7 3.5 7.6E-05 33.7 1.9 43 9-53 26-77 (134)
357 PLN02436 cellulose synthase A 68.6 4.2 9.1E-05 44.6 3.0 46 10-56 37-89 (1094)
358 PF14225 MOR2-PAG1_C: Cell mor 68.2 1E+02 0.0022 28.6 13.9 144 237-401 63-220 (262)
359 KOG3579 Predicted E3 ubiquitin 68.1 2.8 6.1E-05 38.4 1.4 44 7-50 266-316 (352)
360 smart00531 TFIIE Transcription 67.9 3.3 7.1E-05 34.8 1.7 13 44-56 122-134 (147)
361 KOG2932 E3 ubiquitin ligase in 67.9 2.6 5.6E-05 39.2 1.1 42 11-56 92-134 (389)
362 PF06844 DUF1244: Protein of u 67.8 3.4 7.3E-05 29.1 1.4 13 30-42 11-23 (68)
363 PLN02638 cellulose synthase A 66.4 4.9 0.00011 44.2 3.0 45 11-56 19-70 (1079)
364 TIGR02300 FYDLN_acid conserved 65.8 4.1 8.8E-05 32.9 1.7 21 1-21 1-21 (129)
365 KOG3970 Predicted E3 ubiquitin 65.6 14 0.00031 32.8 5.2 46 11-56 52-105 (299)
366 TIGR00373 conserved hypothetic 65.3 6.1 0.00013 33.7 2.9 12 45-56 128-139 (158)
367 PF12906 RINGv: RING-variant d 64.4 3.4 7.5E-05 27.2 0.9 40 12-51 1-47 (47)
368 PF14726 RTTN_N: Rotatin, an a 64.1 66 0.0014 24.9 8.2 93 110-220 2-95 (98)
369 PF12726 SEN1_N: SEN1 N termin 64.0 1E+02 0.0022 33.3 12.6 123 238-366 441-566 (727)
370 cd00730 rubredoxin Rubredoxin; 63.9 3.4 7.3E-05 27.7 0.8 13 5-17 30-42 (50)
371 PRK04023 DNA polymerase II lar 63.8 6.4 0.00014 42.8 3.2 45 8-56 625-674 (1121)
372 KOG0915 Uncharacterized conser 63.7 2.9E+02 0.0063 32.2 17.6 221 109-356 1197-1430(1702)
373 cd03567 VHS_GGA VHS domain fam 63.5 43 0.00093 27.8 7.5 73 196-268 38-116 (139)
374 COG5098 Chromosome condensatio 62.9 31 0.00068 36.2 7.7 100 165-268 312-415 (1128)
375 COG5656 SXM1 Importin, protein 62.9 2.2E+02 0.0048 30.6 14.7 134 196-337 408-551 (970)
376 PF00301 Rubredoxin: Rubredoxi 62.1 3.3 7.2E-05 27.3 0.5 13 5-17 30-42 (47)
377 PF13251 DUF4042: Domain of un 61.9 1.1E+02 0.0024 26.7 10.4 69 239-312 102-175 (182)
378 KOG2462 C2H2-type Zn-finger pr 61.9 4.1 8.9E-05 37.4 1.3 55 7-61 159-231 (279)
379 PF10497 zf-4CXXC_R1: Zinc-fin 61.6 8.4 0.00018 30.3 2.8 45 10-54 8-70 (105)
380 PF04641 Rtf2: Rtf2 RING-finge 61.5 7.4 0.00016 36.1 2.9 34 9-42 34-68 (260)
381 COG5209 RCD1 Uncharacterized p 61.0 90 0.002 28.2 9.3 140 214-356 118-271 (315)
382 KOG1020 Sister chromatid cohes 60.4 3.2E+02 0.0069 31.9 15.2 129 213-357 794-925 (1692)
383 KOG0396 Uncharacterized conser 60.4 7.2 0.00016 37.4 2.6 46 10-56 331-379 (389)
384 PF08167 RIX1: rRNA processing 60.0 64 0.0014 27.5 8.3 113 238-355 25-145 (165)
385 KOG2137 Protein kinase [Signal 59.9 63 0.0014 34.1 9.4 132 197-337 390-521 (700)
386 PF10235 Cript: Microtubule-as 59.3 6.4 0.00014 29.9 1.7 37 9-56 44-80 (90)
387 PLN02915 cellulose synthase A 59.2 7 0.00015 42.9 2.6 46 10-56 16-68 (1044)
388 PF15616 TerY-C: TerY-C metal 59.2 5 0.00011 32.8 1.2 39 10-56 78-116 (131)
389 PF01347 Vitellogenin_N: Lipop 58.7 1.8E+02 0.0039 30.5 13.2 94 197-308 487-586 (618)
390 KOG2199 Signal transducing ada 58.6 51 0.0011 32.2 7.9 82 324-406 45-126 (462)
391 KOG3899 Uncharacterized conser 58.2 6.5 0.00014 36.3 1.9 26 31-56 329-365 (381)
392 PF00790 VHS: VHS domain; Int 57.7 45 0.00097 27.6 6.8 73 196-268 42-118 (140)
393 PF03130 HEAT_PBS: PBS lyase H 57.1 13 0.00028 21.1 2.4 26 212-248 1-26 (27)
394 PF07814 WAPL: Wings apart-lik 56.8 2E+02 0.0043 28.1 17.7 81 165-248 35-116 (361)
395 PF10521 DUF2454: Protein of u 56.8 81 0.0018 29.6 9.2 70 197-267 120-202 (282)
396 KOG3842 Adaptor protein Pellin 55.8 10 0.00022 35.4 2.7 49 7-56 339-414 (429)
397 PF10274 ParcG: Parkin co-regu 55.0 1E+02 0.0023 26.9 8.7 72 98-184 40-112 (183)
398 PF08216 CTNNBL: Catenin-beta- 55.0 14 0.0003 29.1 3.0 40 257-298 64-103 (108)
399 PLN02400 cellulose synthase 54.9 7.7 0.00017 42.7 2.1 45 11-56 38-89 (1085)
400 smart00638 LPD_N Lipoprotein N 54.6 2.7E+02 0.0059 29.0 19.4 157 197-383 394-563 (574)
401 PF08389 Xpo1: Exportin 1-like 54.4 1.2E+02 0.0025 24.7 10.5 125 168-306 4-148 (148)
402 PF14500 MMS19_N: Dos2-interac 54.3 1.8E+02 0.004 26.9 16.9 33 368-401 208-240 (262)
403 COG5183 SSM4 Protein involved 53.6 14 0.00031 39.1 3.6 49 8-56 11-66 (1175)
404 KOG4231 Intracellular membrane 53.5 17 0.00038 36.5 4.0 61 248-311 338-399 (763)
405 KOG0392 SNF2 family DNA-depend 53.0 1.8E+02 0.004 33.1 11.8 189 210-408 143-335 (1549)
406 PRK14559 putative protein seri 52.3 12 0.00027 39.4 3.0 19 11-35 3-21 (645)
407 KOG2169 Zn-finger transcriptio 52.1 13 0.00028 39.3 3.2 67 6-73 303-372 (636)
408 COG5116 RPN2 26S proteasome re 51.8 77 0.0017 32.7 8.2 24 201-224 626-649 (926)
409 PRK11088 rrmA 23S rRNA methylt 51.1 8.8 0.00019 35.8 1.6 25 9-33 2-29 (272)
410 PF04216 FdhE: Protein involve 50.9 2.1 4.5E-05 40.5 -2.7 44 10-55 173-221 (290)
411 KOG4718 Non-SMC (structural ma 50.8 10 0.00022 33.4 1.8 45 10-56 182-227 (235)
412 PF04388 Hamartin: Hamartin pr 50.7 43 0.00092 35.7 6.8 101 65-180 39-139 (668)
413 KOG2032 Uncharacterized conser 50.4 2.9E+02 0.0063 28.1 16.5 116 238-356 254-377 (533)
414 KOG1243 Protein kinase [Genera 50.3 3.2E+02 0.0069 29.0 12.5 251 100-392 258-509 (690)
415 KOG1815 Predicted E3 ubiquitin 50.1 11 0.00024 37.9 2.3 36 7-42 68-104 (444)
416 cd00197 VHS_ENTH_ANTH VHS, ENT 49.2 89 0.0019 24.6 7.1 71 325-396 38-113 (115)
417 PF11791 Aconitase_B_N: Aconit 48.8 94 0.002 26.2 7.0 28 282-311 96-123 (154)
418 cd03572 ENTH_epsin_related ENT 48.7 1.4E+02 0.0031 24.1 9.3 92 300-398 19-119 (122)
419 PF12231 Rif1_N: Rap1-interact 48.3 2.8E+02 0.006 27.2 13.1 187 108-310 6-203 (372)
420 PF00096 zf-C2H2: Zinc finger, 48.3 4.8 0.0001 21.6 -0.4 13 10-22 1-13 (23)
421 PF09986 DUF2225: Uncharacteri 48.0 12 0.00026 33.7 1.9 70 8-77 4-80 (214)
422 PF11707 Npa1: Ribosome 60S bi 47.2 2.7E+02 0.0058 26.8 17.8 169 98-272 58-241 (330)
423 COG3492 Uncharacterized protei 47.0 11 0.00023 28.4 1.1 13 30-42 42-54 (104)
424 KOG2272 Focal adhesion protein 46.9 9.5 0.00021 34.5 1.1 52 3-56 177-232 (332)
425 TIGR01562 FdhE formate dehydro 46.6 5.1 0.00011 38.0 -0.7 43 10-54 185-233 (305)
426 PF12660 zf-TFIIIC: Putative z 46.5 1.5 3.2E-05 34.2 -3.6 45 11-56 16-66 (99)
427 PF03810 IBN_N: Importin-beta 46.4 80 0.0017 22.5 5.9 35 367-401 13-49 (77)
428 PF04499 SAPS: SIT4 phosphatas 45.9 1.4E+02 0.003 30.5 9.3 119 185-311 11-148 (475)
429 PF04499 SAPS: SIT4 phosphatas 45.7 1E+02 0.0022 31.4 8.3 45 359-403 53-97 (475)
430 PLN03205 ATR interacting prote 45.6 1.1E+02 0.0023 30.2 7.9 61 338-398 386-446 (652)
431 KOG1992 Nuclear export recepto 45.6 3.2E+02 0.0068 29.8 11.7 33 197-229 499-531 (960)
432 PRK14890 putative Zn-ribbon RN 45.1 15 0.00033 25.4 1.6 9 45-53 48-56 (59)
433 COG1645 Uncharacterized Zn-fin 44.8 7 0.00015 31.9 -0.1 12 10-21 29-40 (131)
434 PF12830 Nipped-B_C: Sister ch 44.7 1.1E+02 0.0023 26.7 7.4 68 197-270 9-76 (187)
435 PF14205 Cys_rich_KTR: Cystein 44.5 17 0.00038 24.6 1.8 11 45-55 28-38 (55)
436 KOG1078 Vesicle coat complex C 43.7 4.5E+02 0.0098 28.4 20.0 56 166-228 259-314 (865)
437 PF14663 RasGEF_N_2: Rapamycin 43.3 58 0.0013 26.0 5.0 40 239-279 9-48 (115)
438 PF06012 DUF908: Domain of Unk 42.7 88 0.0019 30.1 7.1 61 167-228 237-300 (329)
439 smart00834 CxxC_CXXC_SSSS Puta 42.7 16 0.00035 22.8 1.4 12 45-56 26-37 (41)
440 COG5116 RPN2 26S proteasome re 42.7 69 0.0015 33.0 6.3 68 279-357 550-619 (926)
441 PF08216 CTNNBL: Catenin-beta- 42.4 1.6E+02 0.0034 23.3 7.1 74 298-382 28-101 (108)
442 smart00638 LPD_N Lipoprotein N 42.3 3.9E+02 0.0085 27.8 12.4 143 196-356 357-512 (574)
443 COG2176 PolC DNA polymerase II 41.2 27 0.00058 39.0 3.5 41 5-58 910-952 (1444)
444 PF13894 zf-C2H2_4: C2H2-type 40.7 9 0.0002 20.3 -0.0 11 11-21 2-12 (24)
445 PRK00420 hypothetical protein; 40.2 10 0.00023 30.1 0.2 12 45-56 40-51 (112)
446 KOG2038 CAATT-binding transcri 40.1 5.2E+02 0.011 28.0 12.3 106 197-312 305-410 (988)
447 KOG1832 HIV-1 Vpr-binding prot 40.0 1.5E+02 0.0033 32.4 8.5 171 131-319 595-781 (1516)
448 KOG2038 CAATT-binding transcri 39.9 4.6E+02 0.01 28.4 11.8 116 238-366 304-422 (988)
449 cd00729 rubredoxin_SM Rubredox 39.6 17 0.00036 22.1 1.0 10 45-54 18-27 (34)
450 PRK11595 DNA utilization prote 38.1 23 0.0005 32.1 2.2 39 11-56 7-45 (227)
451 PF04423 Rad50_zn_hook: Rad50 38.0 22 0.00049 24.0 1.6 11 46-56 21-31 (54)
452 PF09723 Zn-ribbon_8: Zinc rib 37.9 8.1 0.00018 24.7 -0.6 25 26-53 10-34 (42)
453 COG4530 Uncharacterized protei 37.8 32 0.00069 26.9 2.5 33 1-33 1-38 (129)
454 KOG1788 Uncharacterized conser 37.7 6.6E+02 0.014 28.6 13.6 240 107-378 479-784 (2799)
455 KOG1992 Nuclear export recepto 37.6 5.8E+02 0.013 27.9 14.4 32 238-270 498-529 (960)
456 KOG1609 Protein involved in mR 37.6 25 0.00054 33.4 2.5 47 10-56 79-134 (323)
457 PF00412 LIM: LIM domain; Int 37.1 25 0.00054 23.7 1.8 32 8-39 25-57 (58)
458 PF08506 Cse1: Cse1; InterPro 36.4 3.4E+02 0.0074 26.6 10.1 137 109-263 225-370 (370)
459 KOG0883 Cyclophilin type, U bo 35.7 17 0.00038 35.1 1.0 50 7-56 99-152 (518)
460 PF06676 DUF1178: Protein of u 35.6 13 0.00029 31.1 0.2 26 26-56 9-43 (148)
461 KOG2225 Proteins containing re 35.1 1.6E+02 0.0034 29.3 7.3 138 114-292 372-520 (695)
462 KOG3053 Uncharacterized conser 35.1 19 0.00041 32.8 1.1 51 6-56 17-82 (293)
463 PRK03564 formate dehydrogenase 34.9 13 0.00028 35.3 0.0 44 8-53 186-234 (309)
464 KOG4464 Signaling protein RIC- 34.9 4.7E+02 0.01 26.1 13.2 135 200-335 49-198 (532)
465 KOG2956 CLIP-associating prote 34.8 5E+02 0.011 26.3 16.2 171 166-353 301-477 (516)
466 cd03572 ENTH_epsin_related ENT 34.8 2E+02 0.0043 23.3 6.8 77 96-179 38-117 (122)
467 PRK01343 zinc-binding protein; 34.8 29 0.00064 23.9 1.7 34 9-42 9-42 (57)
468 PF14631 FancD2: Fanconi anaem 34.1 3.8E+02 0.0082 31.5 11.3 108 197-313 432-544 (1426)
469 PF12171 zf-C2H2_jaz: Zinc-fin 33.6 21 0.00047 20.0 0.8 13 10-22 2-14 (27)
470 TIGR00155 pqiA_fam integral me 33.4 66 0.0014 32.0 4.7 51 1-67 4-55 (403)
471 PF13811 DUF4186: Domain of un 33.2 23 0.00049 27.9 1.1 20 21-41 64-86 (111)
472 COG1675 TFA1 Transcription ini 33.1 49 0.0011 28.6 3.3 33 45-77 132-164 (176)
473 cd08050 TAF6 TATA Binding Prot 33.0 2.9E+02 0.0062 26.8 9.0 112 197-309 211-338 (343)
474 TIGR00117 acnB aconitate hydra 32.9 2.6E+02 0.0055 30.6 9.1 105 89-224 18-125 (844)
475 PF11781 RRN7: RNA polymerase 32.6 24 0.00051 21.8 0.9 23 10-35 9-31 (36)
476 KOG3476 Microtubule-associated 32.6 5.1 0.00011 29.7 -2.4 36 10-56 55-90 (100)
477 KOG1087 Cytosolic sorting prot 32.4 1.2E+02 0.0026 30.8 6.3 73 325-398 39-112 (470)
478 PF12773 DZR: Double zinc ribb 32.2 43 0.00093 22.0 2.2 12 45-56 29-40 (50)
479 PRK06266 transcription initiat 32.1 39 0.00085 29.4 2.6 32 45-76 136-167 (178)
480 KOG3993 Transcription factor ( 32.0 4.8 0.0001 39.2 -3.3 44 5-56 263-306 (500)
481 PF06416 DUF1076: Protein of u 31.8 79 0.0017 25.0 3.8 51 4-56 34-91 (113)
482 TIGR01206 lysW lysine biosynth 31.7 21 0.00045 24.3 0.6 32 9-56 2-33 (54)
483 PF06012 DUF908: Domain of Unk 31.6 1.6E+02 0.0035 28.3 7.0 78 212-289 238-325 (329)
484 PF09237 GAGA: GAGA factor; I 31.2 35 0.00075 22.9 1.5 25 45-75 24-48 (54)
485 PF12874 zf-met: Zinc-finger o 31.1 13 0.00029 20.3 -0.4 14 10-23 1-14 (25)
486 COG1773 Rubredoxin [Energy pro 31.0 25 0.00053 24.0 0.9 12 5-16 32-43 (55)
487 PF14225 MOR2-PAG1_C: Cell mor 30.9 4.4E+02 0.0095 24.5 16.9 165 197-380 61-240 (262)
488 KOG2956 CLIP-associating prote 30.8 5.8E+02 0.013 25.9 16.8 183 197-394 284-473 (516)
489 PF07923 N1221: N1221-like pro 30.8 1.2E+02 0.0027 28.5 5.9 54 237-291 59-127 (293)
490 KOG0413 Uncharacterized conser 30.7 2.1E+02 0.0046 31.7 7.9 128 108-266 944-1071(1529)
491 COG4068 Uncharacterized protei 30.1 68 0.0015 22.1 2.8 18 45-63 8-25 (64)
492 PF13251 DUF4042: Domain of un 30.0 3.7E+02 0.0081 23.4 11.3 142 111-270 2-176 (182)
493 PF14663 RasGEF_N_2: Rapamycin 29.7 1.5E+02 0.0031 23.7 5.3 40 280-321 8-47 (115)
494 PF09450 DUF2019: Domain of un 29.7 55 0.0012 25.7 2.7 59 196-266 47-105 (106)
495 COG3357 Predicted transcriptio 29.5 14 0.00031 27.8 -0.5 31 18-54 55-85 (97)
496 TIGR02605 CxxC_CxxC_SSSS putat 29.4 15 0.00033 24.4 -0.3 25 26-53 10-34 (52)
497 PRK05978 hypothetical protein; 29.2 29 0.00062 29.2 1.2 12 45-56 52-63 (148)
498 PRK14714 DNA polymerase II lar 29.1 54 0.0012 37.0 3.5 48 9-56 667-720 (1337)
499 PF09889 DUF2116: Uncharacteri 29.0 80 0.0017 22.0 3.1 12 45-56 3-14 (59)
500 KOG2034 Vacuolar sorting prote 28.9 24 0.00053 37.9 0.9 34 9-42 817-852 (911)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=4.4e-29 Score=274.69 Aligned_cols=282 Identities=17% Similarity=0.163 Sum_probs=242.9
Q ss_pred ChHHHHHHHHHHh-c--CcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchH
Q 014913 94 NKAQITKLLNEAA-K--SPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPV 169 (416)
Q Consensus 94 ~~~~i~~lv~~l~-~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 169 (416)
....+..++..|. + +++.|.+|+..|+.+++++++||..|.+ .|+||.|+.+|.++ +..++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg---------------~~~vk 75 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG---------------TLGAK 75 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC---------------CHHHH
Confidence 4577889999997 2 5699999999999999999999999996 89999999999987 58899
Q ss_pred HHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhccc---CchhhHhhhhhHHHHHHHH
Q 014913 170 DEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVA---EPMQLISLRQELFVEVIQV 246 (416)
Q Consensus 170 ~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~Lv~l 246 (416)
.+|+.+|.+++.++++...++. .| +|++|+.+|++|+.+.|++|+++|++|+.+. +++..++...|+||+|+.+
T Consensus 76 ~nAaaaL~nLS~~e~nk~~Iv~--~G-aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~l 152 (2102)
T PLN03200 76 VNAAAVLGVLCKEEDLRVKVLL--GG-CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQ 152 (2102)
T ss_pred HHHHHHHHHHhcCHHHHHHHHH--cC-ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHH
Confidence 9999999999988776555665 74 9999999999999999999999999999863 3455677778999999999
Q ss_pred hccCC--ChHHHHHHHHHHHHhCCCCcchH-HHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHhc
Q 014913 247 LHDHI--SQQASKSALEVLVNICPWGRNRI-KGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLKH 322 (416)
Q Consensus 247 L~~~~--~~~~~~~A~~aL~nLs~~~~n~~-~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~ 322 (416)
++++. +..+++.|+.+|+|||.+.+++. .++++|+||.|+.+|.++ ++..++.|+.+|.+++.+ ++.+..+++
T Consensus 153 L~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa~aLa~Lass~ee~~~aVIe- 229 (2102)
T PLN03200 153 LQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAASLLARLMMAFESSISKVLD- 229 (2102)
T ss_pred HhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCChHHHHHHHH-
Confidence 99872 12356778899999999999875 568999999999999987 899999999999988875 668888887
Q ss_pred CCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCC--------cHHHHHHHHHHH
Q 014913 323 GAGLAIVSKKILRVS-QVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDN--------SMKTKDKAREVL 393 (416)
Q Consensus 323 ~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~--------~~~~k~~A~~ll 393 (416)
.|+||.||++|.+++ ..+++.|+++|++|+.++. +.+..+++.|+++.|+.++.+.. +...++.|.++|
T Consensus 230 aGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~--e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwAL 307 (2102)
T PLN03200 230 AGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK--EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGAL 307 (2102)
T ss_pred CCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH--HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHH
Confidence 899999999776654 4889999999999998764 58999999999999999997532 233589999999
Q ss_pred HHHHH
Q 014913 394 KLHAR 398 (416)
Q Consensus 394 ~~l~~ 398 (416)
.++.+
T Consensus 308 sNIcg 312 (2102)
T PLN03200 308 ANICG 312 (2102)
T ss_pred HHHhC
Confidence 99887
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.97 E-value=5.3e-29 Score=274.07 Aligned_cols=280 Identities=18% Similarity=0.200 Sum_probs=244.0
Q ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.++.|++.|. +++..|..|++.|++++..+++++..|+++|+||+|+++|+++ +.+++++|++
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~---------------~~~iqeeAaw 510 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG---------------SQKAKEDSAT 510 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---------------CHHHHHHHHH
Confidence 47889999997 3568999999999999999988999999999999999999987 5899999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch------------------------
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM------------------------ 230 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~------------------------ 230 (416)
+|.|++.++++.+.++. ..| ++++|+++|++++.+.++.|+++|.+|+...+..
T Consensus 511 AL~NLa~~~~qir~iV~-~aG-AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vL 588 (2102)
T PLN03200 511 VLWNLCCHSEDIRACVE-SAG-AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVL 588 (2102)
T ss_pred HHHHHhCCcHHHHHHHH-HCC-CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHH
Confidence 99999998877788886 364 9999999999999999999999999996432211
Q ss_pred -------------hhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchh
Q 014913 231 -------------QLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLER 296 (416)
Q Consensus 231 -------------~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~ 296 (416)
.......|+|+.|+.+|+++ +...++.|+++|.|++.+. +++..++..|+||+|+.+|..+ +.
T Consensus 589 gnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~ 665 (2102)
T PLN03200 589 GHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TE 665 (2102)
T ss_pred HHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--Ch
Confidence 11112358999999999999 9999999999999998755 5788899999999999999998 88
Q ss_pred hhHHHHHHHHHHHcCC--hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 297 RASEMILTVLDLLCQC--AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 297 ~~~~~a~~~L~~La~~--~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
+++..++++|.+|+.+ .+++..++. .|+|++|+++|...+....+.|+.+|.+|+.+.+ .+.++.+.|+|++|+
T Consensus 666 ~v~keAA~AL~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e---~~~ei~~~~~I~~Lv 741 (2102)
T PLN03200 666 AVATQSARALAALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE---VAAEALAEDIILPLT 741 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch---HHHHHHhcCcHHHHH
Confidence 8999999999999963 344566676 7999999998887788999999999999999875 588888999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
.+|++ |+++.|+.|+++|..|.++.
T Consensus 742 ~lLr~-G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 742 RVLRE-GTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHh-CChHHHHHHHHHHHHHHhCC
Confidence 99987 59999999999998888743
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=232.22 Aligned_cols=281 Identities=15% Similarity=0.231 Sum_probs=248.2
Q ss_pred hHHHHHHHHHHh-c-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAA-K-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~-~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.++.+|..|. + ++..|.+|+++|.+++....+.-+.++++|+||.++.+|.+. +..+++.|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~---------------~~~v~eQa 172 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP---------------SADVREQA 172 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC---------------cHHHHHHH
Confidence 377899999996 3 479999999999999999999999999999999999999998 48899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCH-HHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTY-ESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
+|+|.|++.+....+.++.+ .| ++++|+.++...+. ....+++|+|.|||...........-..++|.|..++.+.
T Consensus 173 vWALgNIagds~~~Rd~vl~-~g-~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~- 249 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLS-CG-ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST- 249 (514)
T ss_pred HHHHhccccCChHHHHHHHh-hc-chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-
Confidence 99999999999999998884 64 99999999998765 7889999999999988654444444457999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHH
Q 014913 252 SQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVS 330 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv 330 (416)
|.++...|+|||.+|+.++. ....+++.|++|.|+.+|... +..++-.|+.++.|++.+.+...+.+.+.|+++.|.
T Consensus 250 D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~--~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~ 327 (514)
T KOG0166|consen 250 DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS--SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLS 327 (514)
T ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC--CcccccHHHhhccceeeccHHHHHHHHhcChHHHHH
Confidence 99999999999999997665 666778999999999999988 788999999999999999888888888799999999
Q ss_pred HHHHhc-ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 331 KKILRV-SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 331 ~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.++... .+..++.|++++.|++.+.. +.++.++.+|.+|.|+.+|++. ..++|+.|++++.++..
T Consensus 328 ~ll~~s~~~~ikkEAcW~iSNItAG~~--~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 328 NLLSSSPKESIKKEACWTISNITAGNQ--EQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHhccCcchhHHHHHHHHHHHhhcCCH--HHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 966633 34588999999999999764 5899999999999999999884 78999999999987765
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.6e-28 Score=220.10 Aligned_cols=277 Identities=15% Similarity=0.167 Sum_probs=245.5
Q ss_pred HHHHHHHHHHh--cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAA--KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+.+.++.+ |. .+...|.+|+.+|.++.... +||+.++.+|++|.||++|+++ +..+|.++.
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnmThs~-EnRr~LV~aG~lpvLVsll~s~---------------d~dvqyyct 229 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNMTHSR-ENRRVLVHAGGLPVLVSLLKSG---------------DLDVQYYCT 229 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHhhhhh-hhhhhhhccCCchhhhhhhccC---------------ChhHHHHHH
Confidence 45566666 43 34588899999999998754 5999999999999999999998 689999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
.++.|++.+.-.++.+....+ ..++.||++++++++.++-.|..+|.+|+++.++...++.. |++|.+|++|+++ ..
T Consensus 230 taisnIaVd~~~Rk~Laqaep-~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a-g~lP~lv~Llqs~-~~ 306 (550)
T KOG4224|consen 230 TAISNIAVDRRARKILAQAEP-KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA-GSLPLLVELLQSP-MG 306 (550)
T ss_pred HHhhhhhhhHHHHHHHHhccc-chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc-CCchHHHHHHhCc-ch
Confidence 999999988776666665456 49999999999999999999999999999998888887655 9999999999998 88
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHH
Q 014913 254 QASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~ 332 (416)
....+...+|+|++.++-|...++++|.+.|||.+|..+. +++++-.|..+|++|+. ...++..+++ .|+|+.+.++
T Consensus 307 plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL 384 (550)
T KOG4224|consen 307 PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIEL 384 (550)
T ss_pred hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHH
Confidence 8999999999999999999999999999999999999873 66799999999999998 5667888888 8999999998
Q ss_pred HHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 333 ILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 333 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
++.+.-.+++....++..|+-.+.+ +..+.++|.++.|+..+.+. +.+.+.+|+..|-+++.
T Consensus 385 ~lD~pvsvqseisac~a~Lal~d~~---k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 385 LLDGPVSVQSEISACIAQLALNDND---KEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS 446 (550)
T ss_pred HhcCChhHHHHHHHHHHHHHhcccc---HHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence 8888889999999999999988764 88889999999999999886 89999999999888877
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-27 Score=216.71 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=235.6
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.+..|+....+ ..++|+.|+++|.+++.. ++||..|...|++.++.++-++. +..+|.+|..+
T Consensus 127 Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaksk---------------dirvqrnatga 190 (550)
T KOG4224|consen 127 GLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSK---------------DIRVQRNATGA 190 (550)
T ss_pred ChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccc---------------hhhHHHHHHHH
Confidence 44455555544 359999999999999998 45999999999999999966655 57899999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhh--HHHHHHHHhccCCCh
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQE--LFVEVIQVLHDHISQ 253 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv~lL~~~~~~ 253 (416)
|.||+.+.++++.++. .| ++|.||++|++++.++|.+++.+|.+++.+...++ +..+.| .+|.||++..++ ++
T Consensus 191 LlnmThs~EnRr~LV~--aG-~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk-~Laqaep~lv~~Lv~Lmd~~-s~ 265 (550)
T KOG4224|consen 191 LLNMTHSRENRRVLVH--AG-GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK-ILAQAEPKLVPALVDLMDDG-SD 265 (550)
T ss_pred HHHhhhhhhhhhhhhc--cC-CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH-HHHhcccchHHHHHHHHhCC-Ch
Confidence 9999998888888887 85 99999999999999999999999999997755544 444446 999999999999 99
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHH
Q 014913 254 QASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKI 333 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l 333 (416)
.++-.|..||.||+.+.+.+..++++|.+|.|+++|+++ .....-..+.+++|++.++-|..-|++ .|.+.+||++|
T Consensus 266 kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL 342 (550)
T KOG4224|consen 266 KVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLL 342 (550)
T ss_pred HHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHH
Confidence 999999999999999999999999999999999999887 677777888999999999888877777 89999999966
Q ss_pred Hhc-ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 334 LRV-SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 334 ~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.-+ +.+.|-+|+.+||+|+...+ ..+..+.++|+||+|..++.. ++-..|+.-...+..|+-
T Consensus 343 ~~~dnEeiqchAvstLrnLAasse--~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 343 RAGDNEEIQCHAVSTLRNLAASSE--HNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLAL 405 (550)
T ss_pred hcCCchhhhhhHHHHHHHHhhhhh--hhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHh
Confidence 654 44699999999999998664 368889999999999999976 466777776666666654
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.7e-25 Score=215.43 Aligned_cols=309 Identities=13% Similarity=0.169 Sum_probs=254.5
Q ss_pred HHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhc
Q 014913 69 RLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVT 147 (416)
Q Consensus 69 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~ 147 (416)
+.--.|...|..+|. ...++...+.+.++.++..+.+ +..++.+|+++|.+++.+++..|+.+.+.|++++|+.++.
T Consensus 127 q~eAAWaLTnIAsgt--se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 127 QFEAAWALTNIASGT--SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred HHHHHHHHHHHhcCc--hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 344456666654442 2234555777888999999964 4699999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhccc
Q 014913 148 NSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVA 227 (416)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~ 227 (416)
... .-.....++|+|.||+.+.+-...+.. .. ..+|.|..+|.+.|.++...|+|+|.+|+...
T Consensus 205 ~~~--------------~~~~lRn~tW~LsNlcrgk~P~P~~~~-v~-~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 205 KSD--------------KLSMLRNATWTLSNLCRGKNPSPPFDV-VA-PILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred ccc--------------chHHHHHHHHHHHHHHcCCCCCCcHHH-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 872 136889999999999998743323222 13 39999999999999999999999999999887
Q ss_pred CchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHH
Q 014913 228 EPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVL 306 (416)
Q Consensus 228 ~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L 306 (416)
.....++.+.|++|.||.+|.+. +..++..|++++.|+..+.+ -...+++.|++|.|..++...+ ...++..|++++
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~i 346 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTI 346 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHH
Confidence 88888888889999999999998 88999999999999988777 4566788999999999999542 456899999999
Q ss_pred HHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHH
Q 014913 307 DLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTK 386 (416)
Q Consensus 307 ~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k 386 (416)
.|++.+...+.+.+.++|.+|.|+..|.++.-+.+..|++++.|++.... ++....+++.|.|++|..+|.-. +.+.-
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~-~~qi~yLv~~giI~plcdlL~~~-D~~ii 424 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT-PEQIKYLVEQGIIKPLCDLLTCP-DVKII 424 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC-HHHHHHHHHcCCchhhhhcccCC-ChHHH
Confidence 99988655544444448999999998888777999999999999998876 57888999999999999999543 55556
Q ss_pred HHHHHHHHHHHHh
Q 014913 387 DKAREVLKLHARA 399 (416)
Q Consensus 387 ~~A~~ll~~l~~~ 399 (416)
..+...|.++-++
T Consensus 425 ~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 425 LVALDGLENILKV 437 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777775
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=1.4e-24 Score=197.31 Aligned_cols=310 Identities=13% Similarity=0.124 Sum_probs=253.9
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHH
Q 014913 66 TLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLAS 144 (416)
Q Consensus 66 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~ 144 (416)
.+-+.-..|-..|..+|. ...++.-.+.+.+|-+++.|.+ +.+++.+|+++|.+++.+++..|+.+.+.|++++|+.
T Consensus 129 ~mlqfEAaWalTNiaSGt--t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ 206 (526)
T COG5064 129 DMLQFEAAWALTNIASGT--TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG 206 (526)
T ss_pred hHHHHHHHHHHhhhccCc--ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH
Confidence 344555567777776663 2345556788899999999964 4699999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhh--hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHH
Q 014913 145 FVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELG--LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKS 222 (416)
Q Consensus 145 lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~--~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 222 (416)
+|.+... +..+..++.|.|.||+.+..- ...-+. .++|.|-+++.+-++++...|+|+|.+
T Consensus 207 ll~ss~~-------------~ismlRn~TWtLSNlcRGknP~P~w~~is----qalpiL~KLiys~D~evlvDA~WAiSY 269 (526)
T COG5064 207 LLLSSAI-------------HISMLRNATWTLSNLCRGKNPPPDWSNIS----QALPILAKLIYSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHhccc-------------hHHHHHHhHHHHHHhhCCCCCCCchHHHH----HHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 9987731 357899999999999986421 123444 489999999999999999999999999
Q ss_pred hhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHH
Q 014913 223 MLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEM 301 (416)
Q Consensus 223 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~ 301 (416)
|+.....+..++.+.|..+.||.+|.++ +...+..|++.+.|+..+.+ ....+++.|+++.+..+|++. .+.++..
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKE 346 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKE 346 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhh
Confidence 9988777888888889999999999999 99999999999999987766 556678999999999999988 6799999
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCC-CChHHHHHHHhcChHHHHHHHHhcC
Q 014913 302 ILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFS-ATNSVLQEMLQIGVVAKLCLVLQVD 380 (416)
Q Consensus 302 a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~i~~~G~v~~L~~ll~~~ 380 (416)
|++++.|++.....+.+.+.+.+.+|+|+.+|....-..+..|++++.|...+. ..+.+...+++.|++.+|..+|...
T Consensus 347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~ 426 (526)
T COG5064 347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV 426 (526)
T ss_pred hheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc
Confidence 999999998876666655555999999999777666688999999999987765 3456888899999999999999653
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 014913 381 NSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 381 ~~~~~k~~A~~ll~~l~~ 398 (416)
+-+.-+.|.-.+.++-+
T Consensus 427 -dNkiiev~LD~~eniLk 443 (526)
T COG5064 427 -DNKIIEVALDAIENILK 443 (526)
T ss_pred -CccchhhhHHHHHHHHh
Confidence 33355555555544433
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.93 E-value=1e-24 Score=198.19 Aligned_cols=288 Identities=13% Similarity=0.150 Sum_probs=246.5
Q ss_pred CCChHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchH
Q 014913 92 PINKAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPV 169 (416)
Q Consensus 92 ~~~~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 169 (416)
-++.+.+++++..+.. ..-.+.+|.++|.++++......+.++++|+||.++++|.++ +.+++
T Consensus 110 VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~---------------~~~V~ 174 (526)
T COG5064 110 VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST---------------EDDVR 174 (526)
T ss_pred HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc---------------hHHHH
Confidence 3567889999999952 347788999999999998876777788999999999999988 47899
Q ss_pred HHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCC--HHHHHHHHHHHHHhhcccC--chhhHhhhhhHHHHHHH
Q 014913 170 DEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGT--YESRAYAVLLLKSMLEVAE--PMQLISLRQELFVEVIQ 245 (416)
Q Consensus 170 ~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~Lv~ 245 (416)
+.|+|+|.|++.+.+.++..+.+ .| ++.+++.+|.+.. .....++.|+|.||+.... ..+..+. -++|.|.+
T Consensus 175 eQavWALGNiAGDS~~~RD~vL~-~g-aleplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~K 250 (526)
T COG5064 175 EQAVWALGNIAGDSEGCRDYVLQ-CG-ALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAK 250 (526)
T ss_pred HHHHHHhccccCCchhHHHHHHh-cC-chHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHH
Confidence 99999999999999999999984 64 9999999998764 4778999999999996543 3444333 58999999
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 014913 246 VLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGA 324 (416)
Q Consensus 246 lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~ 324 (416)
++.+. ++++.-.|+|||..|+..+. ....+++.|.-+.|+++|... +..++..|+..+.|+....+.+.+++...|
T Consensus 251 Liys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 251 LIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred HHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehheecc
Confidence 99998 99999999999999999885 556778999999999999998 888999999999999998888888777789
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
+++.+-.+|.+.....+..|++.+.|+..+.. +..+.+++++.+|+|+++|.+. ...+|+.|.+++.+...+-.+-|
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt--eqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNT--EQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCH--HHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCc
Confidence 99999886665566899999999999998775 4788999999999999999874 78899999998888776544444
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.81 E-value=1.4e-17 Score=171.06 Aligned_cols=257 Identities=16% Similarity=0.205 Sum_probs=210.0
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKS 188 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 188 (416)
......++..|.+++.+. .+...+.+.|+|+.|+++|.++ +.++...++..|.+|+...++...
T Consensus 263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~---------------n~ellil~v~fLkkLSi~~ENK~~ 326 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRE---------------NEELLILAVTFLKKLSIFKENKDE 326 (708)
T ss_pred HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCC---------------CHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444456777889998875 5999999999999999999987 588999999999999999887656
Q ss_pred hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 189 LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 189 ~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
+.. .| +++.|+.++.+++.+.+..+..+|+|||++.+.+..+ +..|+||.|+.+|+++ ..+..++..|++||.
T Consensus 327 m~~--~g-iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~m-V~~GlIPkLv~LL~d~---~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 327 MAE--SG-IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQM-VSLGLIPKLVELLKDP---NFREVALKILYNLSM 399 (708)
T ss_pred HHH--cC-CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHH-HHCCCcHHHHHHhCCC---chHHHHHHHHHHhcc
Confidence 655 64 9999999999999999999999999999987776655 4559999999999866 456779999999999
Q ss_pred CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHH
Q 014913 269 WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRIL 348 (416)
Q Consensus 269 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L 348 (416)
.+++|..+...++||.|+++|...+ ++.+...+++++.||+.+..+.+.+.+ .+|++.|++...+..+ ......+
T Consensus 400 dd~~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D---~lLlKlI 474 (708)
T PF05804_consen 400 DDEARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRD---PLLLKLI 474 (708)
T ss_pred CHhhHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhccc---HHHHHHH
Confidence 9999999999999999999987753 566777789999999999999988887 7999999997765443 3345699
Q ss_pred HHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 014913 349 LSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 349 ~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
.|++.+++. .+..+. +.|..|+.++....++...-.+..+|.+|.
T Consensus 475 RNiS~h~~~--~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 475 RNISQHDGP--LKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHhcCch--HHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 999999853 344443 578888888876545555555566666554
No 10
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.78 E-value=2.5e-18 Score=179.28 Aligned_cols=276 Identities=17% Similarity=0.171 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhcc
Q 014913 113 IKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMG 192 (416)
Q Consensus 113 ~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~ 192 (416)
+.|+..|.++..+ ++.|..+-+.|++.+|.+||.-++... |-.. +|.....++.+|..+|.||.+++..+|..+-.
T Consensus 316 caA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mh--gp~t-nd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 316 CAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMH--GPET-NDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred HHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhc--CCCC-CcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 4777888777765 569999999999999999986543211 0000 12234678999999999999999988888877
Q ss_pred ccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC-chhhHhhhhhHHHHHHHHh-ccCCChHHHHHHHHHHHHhCCCC
Q 014913 193 RNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE-PMQLISLRQELFVEVIQVL-HDHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 193 ~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
..| ++..||..|.+...++.+--+.+|.||+...+ +.+.+..+.|-+..|+... +.. .....++.+.|||||+.+.
T Consensus 392 ~rg-fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHc 469 (2195)
T KOG2122|consen 392 QRG-FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK-KESTLKAVLSALWNLSAHC 469 (2195)
T ss_pred hhh-HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhcc
Confidence 785 99999999999999999999999999996654 6667777889889998865 444 6688999999999999866
Q ss_pred -cchHHHHh-hCcHHHHHHHhhcc--cchhhhHHHHHHHHHHHcC----ChhhHHHHHhcCCchHHHHHHHHhcChhhhH
Q 014913 271 -RNRIKGVE-AGAVSILIDLLLDS--SLERRASEMILTVLDLLCQ----CAEGRAELLKHGAGLAIVSKKILRVSQVASE 342 (416)
Q Consensus 271 -~n~~~i~~-~G~v~~Lv~lL~~~--~~~~~~~~~a~~~L~~La~----~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~ 342 (416)
+|+..|.. .|++..||.+|... ...-.+.|.+-++|+|.+. +...|+-+.+ .+++..|+++|++.+-.+..
T Consensus 470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~-~NCLq~LLQ~LKS~SLTiVS 548 (2195)
T KOG2122|consen 470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR-HNCLQTLLQHLKSHSLTIVS 548 (2195)
T ss_pred cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH-hhHHHHHHHHhhhcceEEee
Confidence 69999988 89999999999754 2245789999999999765 4445555555 79999999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 014913 343 RAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 343 ~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
+++++||||+..+. +-.+.+.+.|+|+.|..|+++....-....|+.+.++|+
T Consensus 549 NaCGTLWNLSAR~p--~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 549 NACGTLWNLSARSP--EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred cchhhhhhhhcCCH--HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 99999999998775 367888899999999999998755555555555555443
No 11
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.78 E-value=1.7e-19 Score=133.22 Aligned_cols=72 Identities=47% Similarity=0.944 Sum_probs=62.0
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
+|++|.||||+++|+|||++++|||||+.||++|+..+ ..+||.|++.+. ..++.+|..+++.|++|+.++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~-~~~~P~t~~~l~-~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN-GGTDPFTRQPLS-ESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT-SSB-TTT-SB-S-GGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC-CCCCCCCCCcCC-cccceECHHHHHHHHHHHHHcc
Confidence 58999999999999999999999999999999999874 789999999998 8899999999999999998864
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.78 E-value=3.6e-17 Score=168.07 Aligned_cols=218 Identities=17% Similarity=0.140 Sum_probs=185.5
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQ 245 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 245 (416)
..+...+..+|.||+.+.....+++. . +.++.|+++|++++.++...++.+|.+||...+++..+.. .|+|+.|++
T Consensus 263 eqLlrv~~~lLlNLAed~~ve~kM~~--~-~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~k 338 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVELKMVN--K-GIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHh--c-CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHH
Confidence 45667788899999998877666665 6 4999999999999999999999999999999888777665 599999999
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCc
Q 014913 246 VLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAG 325 (416)
Q Consensus 246 lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~ 325 (416)
++.++ +.+++..++++|+|||.++++|..|++.|+||.|+.+|.++ ..+..++.+|.+|+..+++|..+.. .++
T Consensus 339 Ll~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~~-Tdc 412 (708)
T PF05804_consen 339 LLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFAY-TDC 412 (708)
T ss_pred HhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHhh-cch
Confidence 99998 89999999999999999999999999999999999999765 4667899999999999999988877 689
Q ss_pred hHHHHHHHHhcCh-hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 326 LAIVSKKILRVSQ-VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 326 v~~Lv~~l~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
+|.++++|...+. ..+..++.++.||+.+.. ..+.|.+.|+++.|+.......+ .-..+++++++.|-
T Consensus 413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r---naqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 413 IPQLMQMLLENSEEEVQLELIALLINLALNKR---NAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHD 481 (708)
T ss_pred HHHHHHHHHhCCCccccHHHHHHHHHHhcCHH---HHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcC
Confidence 9999998887644 556667888999998765 57889999999999988754322 22346788888764
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=2.8e-15 Score=136.78 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=225.0
Q ss_pred ChHHHHHHHHHHh---cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 94 NKAQITKLLNEAA---KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 94 ~~~~i~~lv~~l~---~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
+.+.+.-++..|. ++.+.....+..++.-+..++-||+.+.+.|+.|.+.+.|.... -..+.+
T Consensus 143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g--------------k~~~VR 208 (461)
T KOG4199|consen 143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG--------------KTRTVR 208 (461)
T ss_pred ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC--------------ccHHHH
Confidence 3445555566664 34578888889999999888999999999999999998887762 135778
Q ss_pred HHHHHHHhcCCChhh---------hhhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHH
Q 014913 171 EALSILCNLKISELG---------LKSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELF 240 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~---------~~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 240 (416)
++.++++-|..+++- ..+.+.+ .| ++..|++.|+.+ ++++...++.+|..|+..++.++.+.. .||+
T Consensus 209 el~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~-~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl 285 (461)
T KOG4199|consen 209 ELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EG-ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGL 285 (461)
T ss_pred HHHHHHHHhcCCCceeeecchhhHHHHHHHH-hh-hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCH
Confidence 888999988877662 3334443 53 899999999986 789999999999999988787777655 5999
Q ss_pred HHHHHHhccCCChH---HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhH
Q 014913 241 VEVIQVLHDHISQQ---ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGR 316 (416)
Q Consensus 241 ~~Lv~lL~~~~~~~---~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~ 316 (416)
..|+.++.+..... +.+.++..|+.|+.+++++..+++.|+.+.++.++....+++.+.+.++.++..|+. .+++-
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs 365 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHS 365 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchH
Confidence 99999998742333 457788999999999999999999999999999998766689999999999999986 78888
Q ss_pred HHHHhcCCchHHHHHHHHhcCh--hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 317 AELLKHGAGLAIVSKKILRVSQ--VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 317 ~~i~~~~~~v~~Lv~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
..+++ .|+-...|+.|+.... .+|++|++.+.|+...+.+ .+..+.. .|++.|+..-.+. .+..+..|...|+
T Consensus 366 a~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~-~GiE~Li~~A~~~-h~tce~~akaALR 440 (461)
T KOG4199|consen 366 AKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLA-NGIEKLIRTAKAN-HETCEAAAKAALR 440 (461)
T ss_pred HHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHh-ccHHHHHHHHHhc-CccHHHHHHHHHH
Confidence 88888 7888889998887643 7899999999999998764 4555555 5678888877664 5666667777777
Q ss_pred HHH
Q 014913 395 LHA 397 (416)
Q Consensus 395 ~l~ 397 (416)
-|.
T Consensus 441 DLG 443 (461)
T KOG4199|consen 441 DLG 443 (461)
T ss_pred hcC
Confidence 553
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=3.8e-16 Score=157.27 Aligned_cols=287 Identities=14% Similarity=0.111 Sum_probs=221.1
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.+++.+++|.+ ++..|..|..-|..++..+.+.|..+.+.|+|+.||.+|.+. ..+++.+|+++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~---------------~~evq~~acga 298 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR---------------NDEVQRQACGA 298 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC---------------cHHHHHHHHHH
Confidence 57788999974 679999999999999999999999999999999999999988 58999999999
Q ss_pred HHhcCCChhh--hhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC-
Q 014913 176 LCNLKISELG--LKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI- 251 (416)
Q Consensus 176 L~~l~~~~~~--~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~- 251 (416)
|.||..+.++ ++--|.+ . ++|+.++++|+. +|.++++..+.+|+||++.+.-+..++. .++..|-.-+-.+.
T Consensus 299 LRNLvf~~~~~~NKlai~~-~-~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~S 374 (717)
T KOG1048|consen 299 LRNLVFGKSTDSNKLAIKE-L-NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHS 374 (717)
T ss_pred HHhhhcccCCcccchhhhh-c-CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhccccc
Confidence 9999987655 5555553 5 499999999997 7999999999999999998555554443 46777777553211
Q ss_pred ------------ChHHHHHHHHHHHHhCC-CCcchHHHHh-hCcHHHHHHHhhcc----cchhhhHHHHHHHHHHHcCCh
Q 014913 252 ------------SQQASKSALEVLVNICP-WGRNRIKGVE-AGAVSILIDLLLDS----SLERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 252 ------------~~~~~~~A~~aL~nLs~-~~~n~~~i~~-~G~v~~Lv~lL~~~----~~~~~~~~~a~~~L~~La~~~ 313 (416)
+..+..+++++|+|++. ..+.|++|.+ .|.|..|+..+... ..+...+|+++.+|+||+-.-
T Consensus 375 gw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl 454 (717)
T KOG1048|consen 375 GWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRL 454 (717)
T ss_pred ccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchh
Confidence 14667899999999987 6679999988 79999999999721 126778999999999997633
Q ss_pred h------hH--------------------------HHHH------------hcCCch-----HHHHHH----HH-hcChh
Q 014913 314 E------GR--------------------------AELL------------KHGAGL-----AIVSKK----IL-RVSQV 339 (416)
Q Consensus 314 ~------~~--------------------------~~i~------------~~~~~v-----~~Lv~~----l~-~~~~~ 339 (416)
+ .+ ...- ....|+ +.+|+. |. +..+.
T Consensus 455 ~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~ 534 (717)
T KOG1048|consen 455 EAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDN 534 (717)
T ss_pred hhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchH
Confidence 2 00 0000 000010 223322 22 23568
Q ss_pred hhHHHHHHHHHHhcCCC--ChHHHHHH-HhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 340 ASERAVRILLSISKFSA--TNSVLQEM-LQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 340 ~~~~a~~~L~~L~~~~~--~~~~~~~i-~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
+.|.++++|.||+.+.. ..-++..+ .+..+++.|+++|+.+ ++.+.+.++.+|++|++.-.+.
T Consensus 535 TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~rnk 600 (717)
T KOG1048|consen 535 TLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIRNK 600 (717)
T ss_pred HHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCchhh
Confidence 89999999999998774 23455556 6789999999999986 8888999999999999975543
No 15
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.66 E-value=1.2e-16 Score=115.10 Aligned_cols=63 Identities=54% Similarity=0.988 Sum_probs=59.3
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHH
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSW 74 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~ 74 (416)
+|.||||+++|+|||+++|||+||+.||.+|+.+ +.+||.|++.+. ..++.+|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~-~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLT-HEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCC-hhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 578999999998 88999999999999987
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.65 E-value=1.9e-14 Score=131.92 Aligned_cols=239 Identities=15% Similarity=0.222 Sum_probs=187.2
Q ss_pred CChHHHHHHHHHHh--cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 93 INKAQITKLLNEAA--KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 93 ~~~~~i~~lv~~l~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
++++.+..|+..|. .+|.++..|+.++.+.+.. +.+++.|.+.|+++.+.++|.++ ++.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p---------------~~~vr~ 72 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDP---------------NPSVRE 72 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCC---------------ChHHHH
Confidence 67788999999997 4689999999999998775 46999999999999999999988 589999
Q ss_pred HHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC--CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc
Q 014913 171 EALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG--TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH 248 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 248 (416)
.|+.+|.|++.+.++. ..+. . .++.+++...+. +.+++..+..+|.+|+..+++...+ . +.++.|+.+|.
T Consensus 73 ~AL~aL~Nls~~~en~-~~Ik--~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l-~--~~i~~ll~LL~ 144 (254)
T PF04826_consen 73 KALNALNNLSVNDENQ-EQIK--M--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHML-A--NYIPDLLSLLS 144 (254)
T ss_pred HHHHHHHhcCCChhhH-HHHH--H--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhH-H--hhHHHHHHHHH
Confidence 9999999999887764 4454 2 788888876654 6789999999999999776665543 2 57999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhH-HHHHhcCCchH
Q 014913 249 DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGR-AELLKHGAGLA 327 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~~~~v~ 327 (416)
.| +..++..++++|.|||.++.+...++.+.+++.++.++.... +.++...++....||..+-... ..+..+...-.
T Consensus 145 ~G-~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~-~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~ 222 (254)
T PF04826_consen 145 SG-SEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSE-SKENLLRVLTFFENINENIKKEAYVFVQDDFSED 222 (254)
T ss_pred cC-ChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCC-ccHHHHHHHHHHHHHHHhhCcccceeccccCCch
Confidence 99 999999999999999999999999999999999999998753 6788889999999997653322 22232344455
Q ss_pred HHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHH
Q 014913 328 IVSKKILRVSQVASERAVRILLSISKFSATNSVLQE 363 (416)
Q Consensus 328 ~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 363 (416)
.|. .+...+. ..+.-|..|..+ .|+++++.
T Consensus 223 ~L~-~~~~e~~----~~~~~l~~l~~h-~d~ev~~~ 252 (254)
T PF04826_consen 223 SLF-SLFGESS----QLAKKLQALANH-PDPEVKEQ 252 (254)
T ss_pred hHH-HHHccHH----HHHHHHHHHHcC-CCHHHhhh
Confidence 666 3553332 233344456655 33455544
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.63 E-value=3.6e-14 Score=143.11 Aligned_cols=297 Identities=17% Similarity=0.123 Sum_probs=223.1
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChh--hhhHHhhcCcHHHHHHHhccCCCCCC------------C-----
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENET--NKRCLESAGAVEFLASFVTNSNAMEE------------S----- 155 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~------------~----- 155 (416)
++|+.+|..|.. .++++.+|+++|+||.-+... ||-.|.+.|+|+.++++|....+++. |
T Consensus 275 ggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK 354 (717)
T KOG1048|consen 275 GGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALK 354 (717)
T ss_pred ccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHH
Confidence 467788888863 579999999999999976554 99999999999999999996433111 0
Q ss_pred -----------------CCCCCCC------CCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-----
Q 014913 156 -----------------PEGFDNL------HESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR----- 207 (416)
Q Consensus 156 -----------------~~~~~~~------~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~----- 207 (416)
.--||++ +.+..+..++..+|.|++.-.++-++-+.+..| .|..|+..+++
T Consensus 355 ~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~G-LIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 355 MLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDG-LIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccc-hHHHHHHHHHHHHHhc
Confidence 0122222 124578888999999999844444455555675 99999999973
Q ss_pred -CCHHHHHHHHHHHHHhhcccC-------------------------------chhhH----------------------
Q 014913 208 -GTYESRAYAVLLLKSMLEVAE-------------------------------PMQLI---------------------- 233 (416)
Q Consensus 208 -~~~~~~~~a~~~L~~l~~~~~-------------------------------~~~~~---------------------- 233 (416)
-+....++++.+|+||+..-+ .+...
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 366778999999999984221 00000
Q ss_pred hhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-----chHHH-HhhCcHHHHHHHhhcccchhhhHHHHHHHHH
Q 014913 234 SLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-----NRIKG-VEAGAVSILIDLLLDSSLERRASEMILTVLD 307 (416)
Q Consensus 234 ~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-----n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~ 307 (416)
.-..-+|.+=..+|....+..+.+++++||.||+...- .+..+ .+.-+.|+|+++|..+ +..++..++++|+
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~--~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND--DSDVVRSAAGALR 591 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC--CchHHHHHHHHHh
Confidence 11223444434445433377999999999999986543 44444 5688899999999999 8999999999999
Q ss_pred HHcCChhhHHHHHhcCCchHHHHHHHHhc------ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCC
Q 014913 308 LLCQCAEGRAELLKHGAGLAIVSKKILRV------SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDN 381 (416)
Q Consensus 308 ~La~~~~~~~~i~~~~~~v~~Lv~~l~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~ 381 (416)
||+.+..++..|.. ++++.||+.|-.. +++....++.+|+++...+- .....+.+.+++++|+.+..+.-
T Consensus 592 Nls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~--~nAkdl~~~~g~~kL~~I~~s~~ 667 (717)
T KOG1048|consen 592 NLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV--LNAKDLLEIKGIPKLRLISKSQH 667 (717)
T ss_pred hhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH--HHHHHHHhccChHHHHHHhcccC
Confidence 99999999998875 8999999977543 24677788889999986654 36778899999999999998877
Q ss_pred cHHHHHHHHHHHHHHHHh
Q 014913 382 SMKTKDKAREVLKLHARA 399 (416)
Q Consensus 382 ~~~~k~~A~~ll~~l~~~ 399 (416)
+++.-+.|..+|..|-.|
T Consensus 668 S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 668 SPKEFKAASSVLDVLWQY 685 (717)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 888888898888877654
No 18
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.63 E-value=3.2e-14 Score=130.38 Aligned_cols=201 Identities=13% Similarity=0.068 Sum_probs=174.5
Q ss_pred cCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcc
Q 014913 194 NGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRN 272 (416)
Q Consensus 194 ~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n 272 (416)
+ +.++.|+.+|+. .++.+++.|..++.+.+.+.. .+.++.+.|+++.+..+|.++ ++.+++.|+++|.||+.+.+|
T Consensus 11 ~-~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 11 A-QELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhh
Confidence 5 489999999996 589999999999999987754 455556679999999999999 999999999999999999999
Q ss_pred hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHh
Q 014913 273 RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSIS 352 (416)
Q Consensus 273 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~ 352 (416)
+..+-. .|+.+.+.+.+.+.+..++..++.+|.+|+..++.+..+. +.++.++.+|.+++...+.+++.+|.+|+
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 987643 6888888877765678899999999999998887777664 46999999988889999999999999999
Q ss_pred cCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCC
Q 014913 353 KFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPC 405 (416)
Q Consensus 353 ~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~ 405 (416)
.+.. ...++.++.++..++.+++.+.+.+.-..+..++.+++++|+...-
T Consensus 163 ~np~---~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~ 212 (254)
T PF04826_consen 163 ENPD---MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAY 212 (254)
T ss_pred cCHH---HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccc
Confidence 8754 6888899999999999998876788889999999999999876533
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=2.1e-11 Score=111.73 Aligned_cols=269 Identities=14% Similarity=0.143 Sum_probs=211.9
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKS 188 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 188 (416)
.....+++.+|-.+....+ .+.++-+...++.+|..... +.++....+..+..-|...+.+++
T Consensus 121 ~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~-------------~~dlt~~~~~~v~~Ac~~hE~nrQ 183 (461)
T KOG4199|consen 121 ESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVE-------------SEEVTLLTLQWLQKACIMHEVNRQ 183 (461)
T ss_pred hhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccc-------------hHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3666778888777766544 46777889999999987642 456666677777766665555666
Q ss_pred hhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCch----------hhHhhhhhHHHHHHHHhccCCChHHHH
Q 014913 189 LVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPM----------QLISLRQELFVEVIQVLHDHISQQASK 257 (416)
Q Consensus 189 ~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 257 (416)
.+.+ . +.++.+...|.. |...+...+.+++..|..+++-+ +.+..+ |++..|+..|+-+.++....
T Consensus 184 ~~m~-~-~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e-~~l~~L~Eal~A~~dp~~L~ 260 (461)
T KOG4199|consen 184 LFME-L-KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKE-GILTALTEALQAGIDPDSLV 260 (461)
T ss_pred HHHH-h-hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHh-hhHHHHHHHHHccCCccHHH
Confidence 5553 6 388888867765 55567788999999998776533 334434 78899999999877788888
Q ss_pred HHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc--chhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh
Q 014913 258 SALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS--LERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR 335 (416)
Q Consensus 258 ~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~ 335 (416)
.+..+|..|+..++.+..+.+.|++..|+.++.+.. ....+...++..|+.|+.+++.+..|++ .||.+.++.++.+
T Consensus 261 ~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~ 339 (461)
T KOG4199|consen 261 SLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALR 339 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHH
Confidence 999999999999999999999999999999998742 1233567899999999999999999999 7999999998887
Q ss_pred c--ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhc
Q 014913 336 V--SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDN-SMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 336 ~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~-~~~~k~~A~~ll~~l~~~~ 400 (416)
. ++.+-+.+..++..||-..++ ....+++.|+-...++-|...+ -...+++|.++++++..+-
T Consensus 340 h~~~p~Vi~~~~a~i~~l~LR~pd--hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs 405 (461)
T KOG4199|consen 340 HSDDPLVIQEVMAIISILCLRSPD--HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS 405 (461)
T ss_pred cCCChHHHHHHHHHHHHHHhcCcc--hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh
Confidence 6 457788888899999988876 5777889999999999997753 3357899999999998864
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.48 E-value=2.3e-14 Score=93.12 Aligned_cols=40 Identities=35% Similarity=0.764 Sum_probs=31.7
Q ss_pred CcCccccCCCceecCCcCcccHHHHHHHHHcCCC--CCCCCC
Q 014913 12 CPISLAIMKDPVTVPTGITYDRESIEKWLFAGKN--NTCPMT 51 (416)
Q Consensus 12 Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~--~~CP~~ 51 (416)
||||+++|++||+++|||+||+.||.+||++.+. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986432 579987
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.44 E-value=1.4e-12 Score=137.21 Aligned_cols=228 Identities=14% Similarity=0.101 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh-hhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL-GLK 187 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~-~~~ 187 (416)
..|.+|..+|.||...+..||..+.. -|.+..+|..|.+. ..+++.-.+.+|.||+=..+ +.+
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~---------------peeL~QV~AsvLRNLSWRAD~nmK 430 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA---------------PEELLQVYASVLRNLSWRADSNMK 430 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC---------------hHHHHHHHHHHHHhccccccccHH
Confidence 78899999999999999989999885 59999999999987 24788888899999986543 456
Q ss_pred hhhccccCCccHHHHHH-HhcCCHHHHHHHHHHHHHhhccc-CchhhHhhhhhHHHHHHHHhccC---CChHHHHHHHHH
Q 014913 188 SLVMGRNGTFVDSLTQI-MQRGTYESRAYAVLLLKSMLEVA-EPMQLISLRQELFVEVIQVLHDH---ISQQASKSALEV 262 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~A~~a 262 (416)
+++.+ .| .+..|+.. |+............+||||+.+. +|+..|..-.|++..||.+|.-. ......++|-+.
T Consensus 431 kvLrE-~G-sVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGI 508 (2195)
T KOG2122|consen 431 KVLRE-TG-SVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGI 508 (2195)
T ss_pred HHHHh-hh-hHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccH
Confidence 66664 64 77777776 55556677788899999999775 57788888889999999999722 255788999999
Q ss_pred HHHhCC----CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc-CChhhHHHHHhcCCchHHHHHHHHhcC
Q 014913 263 LVNICP----WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC-QCAEGRAELLKHGAGLAIVSKKILRVS 337 (416)
Q Consensus 263 L~nLs~----~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La-~~~~~~~~i~~~~~~v~~Lv~~l~~~~ 337 (416)
|+|.+. ..+.|..+.++..+..|+++|++. +-.++-+++++||||+ ++++.++.+.. .|+|+.|-.+|.+..
T Consensus 509 LRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKh 585 (2195)
T KOG2122|consen 509 LRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKH 585 (2195)
T ss_pred HHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhh
Confidence 999865 456888888999999999999998 7889999999999995 57888888887 799999999887777
Q ss_pred hhhhHHHHHHHHHHhcCCCC
Q 014913 338 QVASERAVRILLSISKFSAT 357 (416)
Q Consensus 338 ~~~~~~a~~~L~~L~~~~~~ 357 (416)
....+-++.+|.||-.+...
T Consensus 586 kMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 586 KMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hhhhhhHHHHHHHHhcCCch
Confidence 78889999999999887754
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.44 E-value=4.7e-11 Score=121.23 Aligned_cols=275 Identities=16% Similarity=0.123 Sum_probs=207.0
Q ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.-.+.+...|. .++.+|.-+++.|.+++.+++.....+.+.+.++.++.+|.++ +.++.+.|+.
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~---------------d~~Va~~A~~ 141 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP---------------DLSVAKAAIK 141 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC---------------cHHHHHHHHH
Confidence 33444555554 4679999999999999998887788888999999999999887 5889999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
+|.+++.+......++. . +.+..|..++...+..+|-++..++.+++...+.....+...|.++.++..|+++ |.-
T Consensus 142 ~L~~l~~~~~~~~~l~~--~-~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiL 217 (503)
T PF10508_consen 142 ALKKLASHPEGLEQLFD--S-NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DIL 217 (503)
T ss_pred HHHHHhCCchhHHHHhC--c-chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHH
Confidence 99999988877766665 5 4899999999988889999999999999988777777778789999999999998 999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchh----hhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHH
Q 014913 255 ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLER----RASEMILTVLDLLCQCAEGRAELLKHGAGLAIVS 330 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~----~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv 330 (416)
++.+++..|..|+..+.+...+.+.|+++.|+.++.....++ -..-..+....+++..... .+. +..|.++
T Consensus 218 vqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~v~---~~~p~~~ 292 (503)
T PF10508_consen 218 VQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--EVL---ELYPAFL 292 (503)
T ss_pred HHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--HHH---HHHHHHH
Confidence 999999999999998889999999999999999998663233 1222333556666663111 111 2234444
Q ss_pred HHHH----hcChhhhHHHHHHHHHHhcCCCChHHHHHH-Hh-cChHHHHHHHHhc---CCcHHHHHHHHHHHHHHH
Q 014913 331 KKIL----RVSQVASERAVRILLSISKFSATNSVLQEM-LQ-IGVVAKLCLVLQV---DNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 331 ~~l~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i-~~-~G~v~~L~~ll~~---~~~~~~k~~A~~ll~~l~ 397 (416)
..+. +.+...+..|..++..++..... +..+ .+ .+.+...+..... .++.+.|-++...|..+-
T Consensus 293 ~~l~~~~~s~d~~~~~~A~dtlg~igst~~G---~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 293 ERLFSMLESQDPTIREVAFDTLGQIGSTVEG---KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL 365 (503)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHhCCHHH---HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 4443 45668889999999999976543 3333 33 3454554444322 245567777777776663
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.37 E-value=8.4e-12 Score=101.53 Aligned_cols=114 Identities=19% Similarity=0.203 Sum_probs=101.0
Q ss_pred cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-c
Q 014913 194 NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-N 272 (416)
Q Consensus 194 ~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n 272 (416)
.| +++.|+++|++++..++..++++|.+++...+.........|+++.|+.+|.++ +..++..|+++|+||+.+.. .
T Consensus 6 ~~-~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 6 AG-GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred cC-ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcHHH
Confidence 54 999999999999999999999999999987444444445569999999999998 99999999999999998774 6
Q ss_pred hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 273 RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 273 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
+..+++.|+++.|+++|... +..+++.++++|.+|+.
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhhC
Confidence 77788899999999999988 88999999999999973
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.36 E-value=1.1e-11 Score=100.86 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh
Q 014913 236 RQELFVEVIQVLHDHISQQASKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 236 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~ 314 (416)
+.|+++.|+.+++++ +...+..++++|.+++.. ++.+..+++.|+++.|+++|.+. ++.+++.++++|.+|+....
T Consensus 5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcH
Confidence 458999999999998 899999999999999987 67888999999999999999987 89999999999999999765
Q ss_pred h-HHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 315 G-RAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 315 ~-~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
. +..+.. .|+++.|++.+...+...++.+..+|.+|+.
T Consensus 82 ~~~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 4 444555 7999999998887788999999999999873
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.33 E-value=2.5e-10 Score=116.03 Aligned_cols=253 Identities=19% Similarity=0.173 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 96 AQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 96 ~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
+.+..+++.| .....+.+++..+..-....+ . .+....+.+...|... +.+....+..+
T Consensus 3 ~~~~~~l~~l-~~~~~~~~~L~~l~~~~~~~~-~----l~~~~~~~lf~~L~~~---------------~~e~v~~~~~i 61 (503)
T PF10508_consen 3 EWINELLEEL-SSKAERLEALPELKTELSSSP-F----LERLPEPVLFDCLNTS---------------NREQVELICDI 61 (503)
T ss_pred hHHHHHHHHH-hcccchHHHHHHHHHHHhhhh-H----HHhchHHHHHHHHhhc---------------ChHHHHHHHHH
Confidence 3455666666 444677777877777554433 1 1112223388888866 35556667777
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQA 255 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 255 (416)
|..+-...+ ...+. . +..+.|...|.++++.+|..+++.|.++..+.+....+..+.+.++.++.++.++ +.++
T Consensus 62 L~~~l~~~~-~~~l~---~-~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~V 135 (503)
T PF10508_consen 62 LKRLLSALS-PDSLL---P-QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSV 135 (503)
T ss_pred HHHHHhccC-HHHHH---H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHH
Confidence 776554322 22332 4 4889999999999999999999999999987776667777789999999999999 9999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh
Q 014913 256 SKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR 335 (416)
Q Consensus 256 ~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~ 335 (416)
.+.|+.+|.+|+.+..+...+.+.+.++.|..++... +..++-.+..++.+++.....-...+...|.++.+++.+..
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS 213 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC
Confidence 9999999999999988888888999999999999886 67788999999999987555444444448999999998887
Q ss_pred cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcC
Q 014913 336 VSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVD 380 (416)
Q Consensus 336 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~ 380 (416)
.+.-++..++.+|..|+.... ..+.+.+.|+++.|..++...
T Consensus 214 dDiLvqlnalell~~La~~~~---g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 214 DDILVQLNALELLSELAETPH---GLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred ccHHHHHHHHHHHHHHHcChh---HHHHHHhCCHHHHHHHHHhcc
Confidence 666899999999999999544 588899999999999999653
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.29 E-value=5.6e-10 Score=105.55 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=203.4
Q ss_pred HHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccC
Q 014913 116 LKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNG 195 (416)
Q Consensus 116 l~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G 195 (416)
+..+..-+.+++..+-.+++.|.+..++.+++.-.... +..+....-..+.....-+..+++....+.. .+
T Consensus 244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t-------~k~d~~~l~k~~~el~vllltGDeSMq~L~~-~p- 314 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFT-------KKTDMLNLFKRIAELDVLLLTGDESMQKLHA-DP- 314 (604)
T ss_pred HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhccccc-------chHHHHHHHHhhhhHhhhhhcCchHHHHHhc-Cc-
Confidence 34444455567779999999999999999998731100 0001223445555555556666666555655 34
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc-----cCCChHHHHHHHHHHHHhCCCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH-----DHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
..++.+++.+.+.+......++.+|+|++..++.+...+.. |.+..|+.+|. +| +.+.+.+++.||+||.--.
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdg-nV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDG-NVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCc-cchhHHHHHHHHHhccccC
Confidence 58999999999999999999999999999998888776654 99999999986 35 7799999999999999999
Q ss_pred cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHHhcCCchHHHHHHHHhcCh-hhhHHHHHHH
Q 014913 271 RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELLKHGAGLAIVSKKILRVSQ-VASERAVRIL 348 (416)
Q Consensus 271 ~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~~~~v~~Lv~~l~~~~~-~~~~~a~~~L 348 (416)
.|+..++.+|++.+++..++.. .+.++-.-+++|+-+-...+ ...++..+..-+..||..-.+.+- .+.-...+.|
T Consensus 393 ~nka~~~~aGvteaIL~~lk~~--~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll 470 (604)
T KOG4500|consen 393 SNKAHFAPAGVTEAILLQLKLA--SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLL 470 (604)
T ss_pred CchhhccccchHHHHHHHHHhc--CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHH
Confidence 9999999999999999999998 88999999999998877655 445555554555566654443322 2445556677
Q ss_pred HHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 349 LSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 349 ~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
.-|-+++.-+++...+.+.|+|..++..+.++ .-.-+..|...|-.+...|-..
T Consensus 471 ~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~yl~~ 524 (604)
T KOG4500|consen 471 LGLIKHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKYLIV 524 (604)
T ss_pred HHHHHhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHhccc
Confidence 77777765455788888999999999999775 4556667766666666644433
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=3.5e-12 Score=122.56 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=63.9
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhc
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLN 78 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~ 78 (416)
.+...+.||||+++|.+||+++|||+||..||..|+.. ...||.|+..+. ...+..|..+.++|+.|...+
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~-~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQ-ESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccc-cccCccchHHHHHHHHHHHhh
Confidence 35677999999999999999999999999999999976 458999999998 778999999999999997654
No 28
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.27 E-value=3.2e-12 Score=109.61 Aligned_cols=61 Identities=33% Similarity=0.553 Sum_probs=50.9
Q ss_pred CCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHc--------------CCCCCCCCCCccccCCCCCCCch
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA--------------GKNNTCPMTKQVLSSECELTPNH 65 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~--------------~~~~~CP~~~~~l~~~~~l~~n~ 65 (416)
++..++|.||||++.++|||+++|||.||+.||.+|+.. .....||.|+..+. ...+.|..
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is-~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS-EATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC-hhcEEEee
Confidence 345678999999999999999999999999999999852 12468999999998 66666653
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.24 E-value=7.2e-10 Score=106.08 Aligned_cols=236 Identities=15% Similarity=0.133 Sum_probs=168.9
Q ss_pred CcHHHHHHHhccC-CCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccc-----cCCccHHHHHHHhcCCH
Q 014913 137 GAVEFLASFVTNS-NAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGR-----NGTFVDSLTQIMQRGTY 210 (416)
Q Consensus 137 G~i~~Lv~lL~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-----~G~~i~~Lv~lL~~~~~ 210 (416)
+.+..++++|+.- + +.++..+.+..+..+..++....+++.+. . ....+++++|.+++.
T Consensus 55 ~~~~~~l~lL~~~~~--------------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~-~~~~~fl~ll~~~D~ 119 (312)
T PF03224_consen 55 QYASLFLNLLNKLSS--------------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDS-DPYSPFLKLLDRNDS 119 (312)
T ss_dssp -------HHHHHH-----------------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH---HHHHHHH-S-SSH
T ss_pred hHHHHHHHHHHHccC--------------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc-hhHHHHHHHhcCCCH
Confidence 4467777888765 3 57899999999999887776665655531 2 257889999999999
Q ss_pred HHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC---ChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHH
Q 014913 211 ESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI---SQQASKSALEVLVNICPWGRNRIKGVEAGAVSILID 287 (416)
Q Consensus 211 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~ 287 (416)
-++..|+.+|..+............ .+.++.++..|++.. +.+.+..|+.+|.+|...++.|..+.+.|+++.|+.
T Consensus 120 ~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~ 198 (312)
T PF03224_consen 120 FIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFD 198 (312)
T ss_dssp HHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHH
Confidence 9999999999999876554444333 378899998887531 445678999999999999999999999999999999
Q ss_pred Hh-----hcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc-ChhhhHHHHHHHHHHhcCCCChHHH
Q 014913 288 LL-----LDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV-SQVASERAVRILLSISKFSATNSVL 361 (416)
Q Consensus 288 lL-----~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~ 361 (416)
+| ...+.+..++..++-+++.|+.+++....+.. .+.|+.|++.+... .+++.+.++.+|.||.....+ ...
T Consensus 199 iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~-~~~ 276 (312)
T PF03224_consen 199 ILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK-SNI 276 (312)
T ss_dssp HHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST-THH
T ss_pred HHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH-HHH
Confidence 99 22223678899999999999999999999988 56999999977765 358999999999999988764 378
Q ss_pred HHHHhcChHHHHHHHHhcC-CcHHHHHHHH
Q 014913 362 QEMLQIGVVAKLCLVLQVD-NSMKTKDKAR 390 (416)
Q Consensus 362 ~~i~~~G~v~~L~~ll~~~-~~~~~k~~A~ 390 (416)
..|+..|+++.|-.+.... .+++..+--.
T Consensus 277 ~~mv~~~~l~~l~~L~~rk~~Dedl~edl~ 306 (312)
T PF03224_consen 277 ELMVLCGLLKTLQNLSERKWSDEDLTEDLE 306 (312)
T ss_dssp HHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred HHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 8899988887776655332 3555544433
No 30
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=2.7e-09 Score=100.00 Aligned_cols=175 Identities=13% Similarity=0.025 Sum_probs=102.8
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
++.++..|+.+|.++....... . . .++..+...+.+.+..+|..++.+|..+. ...+++.|+
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~----~--~-~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----------~~~ai~~L~ 165 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLY----S--P-KIVEQSQITAFDKSTNVRFAVAFALSVIN-----------DEAAIPLLI 165 (280)
T ss_pred CHHHHHHHHHHHhccccccccc----c--h-HHHHHHHHHhhCCCHHHHHHHHHHHhccC-----------CHHHHHHHH
Confidence 3556666666666554221100 1 2 24555555555556666666666664331 123667777
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGA 324 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~ 324 (416)
.+|++. +..++..|+.+|.++... ...+++.|+.+|.+. +..++..|+.+|..+-. ..
T Consensus 166 ~~L~d~-~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~-----------~~ 223 (280)
T PRK09687 166 NLLKDP-NGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDK--NEEIRIEAIIGLALRKD-----------KR 223 (280)
T ss_pred HHhcCC-CHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCC-----------hh
Confidence 777766 667777777777766221 113566677777666 66777777777765421 34
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
+++.|++.+.+.. ....++.+|..+.. .-+++.|..+++...+...+.+|.+.|+
T Consensus 224 av~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 224 VLSVLIKELKKGT--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHcCCc--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 5677777655432 44555555555543 2368888888875558888888887775
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.13 E-value=1.6e-11 Score=111.66 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=63.0
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLN 78 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~ 78 (416)
.+-++|-||.+||+-||+++||||||.-||..+++. ++.||.|..+++ ...+..|..+..+|+.|..-+
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~-Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVT-ESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccc-hhhhhhhhHHHHHHHHHHHHH
Confidence 355899999999999999999999999999999987 689999999998 899999999999999986644
No 32
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.11 E-value=4.7e-11 Score=76.65 Aligned_cols=38 Identities=45% Similarity=0.916 Sum_probs=32.8
Q ss_pred CcCccccCCCce-ecCCcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 12 CPISLAIMKDPV-TVPTGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 12 Cpic~~~~~~Pv-~l~cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
||||.+.+.+|+ .++|||+||+.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 899999999994 7899999999999999987 5789987
No 33
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.3e-08 Score=99.04 Aligned_cols=292 Identities=15% Similarity=0.184 Sum_probs=215.9
Q ss_pred CCCCCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 014913 87 PTPKPPINKAQITKLLNEAAKS--PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHE 164 (416)
Q Consensus 87 ~~~~~~~~~~~i~~lv~~l~~~--~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~ 164 (416)
..|+.+...+.|+.|..++.++ ++.|+.|+..|..+++. +|..+...| +++|+..|..+..
T Consensus 13 q~~k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~~Vga~G-mk~li~vL~~D~~------------- 75 (970)
T KOG0946|consen 13 QPPKQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YREEVGAQG-MKPLIQVLQRDYM------------- 75 (970)
T ss_pred CCCccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHHHHHHcc-cHHHHHHHhhccC-------------
Confidence 4566667789999999999754 59999999999999884 787777665 8999999988742
Q ss_pred CcchHHHHHHHHHhcCCChh------hhh-----------hhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc-
Q 014913 165 SSRPVDEALSILCNLKISEL------GLK-----------SLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV- 226 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~------~~~-----------~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~- 226 (416)
|+++...|+..+.++..+++ +.+ .++. .. +.|..|+..+...+-.+|..+...|.++-..
T Consensus 76 D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik-~q-d~I~lll~~~e~~DF~VR~~aIqLlsalls~r 153 (970)
T KOG0946|consen 76 DPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIK-NQ-DNITLLLQSLEEFDFHVRLYAIQLLSALLSCR 153 (970)
T ss_pred CHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHc-Cc-hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC
Confidence 68999999999999887764 211 1333 45 4999999999999999999999999998754
Q ss_pred -cCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh-hCcHHHHHHHhhccc-c-hhhhHHHH
Q 014913 227 -AEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSS-L-ERRASEMI 302 (416)
Q Consensus 227 -~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~-~-~~~~~~~a 302 (416)
.+-+..+...+-+|..|+.+|.+. ....|-.++..|..|..+..+...++. .+++..|..++...+ . ..-+++.|
T Consensus 154 ~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDC 232 (970)
T KOG0946|consen 154 PTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDC 232 (970)
T ss_pred CHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 345566777888999999999987 778888999999999998887766665 889999999998653 2 23588999
Q ss_pred HHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh---cC----hhh------hHHHHHHHHHHhcCCCC----hHHHHHHH
Q 014913 303 LTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR---VS----QVA------SERAVRILLSISKFSAT----NSVLQEML 365 (416)
Q Consensus 303 ~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~---~~----~~~------~~~a~~~L~~L~~~~~~----~~~~~~i~ 365 (416)
+..|-||-+.....+.+..+.+-||.|.++|.. ++ .+. ...+..++..|..-+.. .+....|.
T Consensus 233 L~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ 312 (970)
T KOG0946|consen 233 LILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALV 312 (970)
T ss_pred HHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 999999998655444444447889999974432 12 111 22334444444443321 23445788
Q ss_pred hcChHHHHHHHHhcCC-cHHHHHHHHHHHHHHHH
Q 014913 366 QIGVVAKLCLVLQVDN-SMKTKDKAREVLKLHAR 398 (416)
Q Consensus 366 ~~G~v~~L~~ll~~~~-~~~~k~~A~~ll~~l~~ 398 (416)
+.+++..|..++.+++ ....+..+...+...-|
T Consensus 313 ss~ll~~Lc~il~~~~vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 313 SSHLLDVLCTILMHPGVPADILTESIITVAEVVR 346 (970)
T ss_pred HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 8999999999987764 33455555444444443
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.3e-09 Score=99.34 Aligned_cols=253 Identities=14% Similarity=0.135 Sum_probs=174.9
Q ss_pred HHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhc
Q 014913 101 LLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNL 179 (416)
Q Consensus 101 lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l 179 (416)
||+.|. ++.+.......-|.+++--. +||..+.+.|.|..|++++... .++++...+..|.|+
T Consensus 309 LVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~---------------h~dL~~~tl~LlfNl 372 (791)
T KOG1222|consen 309 LVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQ---------------HPDLRKATLMLLFNL 372 (791)
T ss_pred HHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCC---------------CHHHHHHHHHHhhhc
Confidence 444443 23344444445555565544 5999999999999999999888 488999999999999
Q ss_pred CCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHH
Q 014913 180 KISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSA 259 (416)
Q Consensus 180 ~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A 259 (416)
+.+...+.+++. .| .+|.|+.+|.+.+. +.-|...|..++.+++.+.+... ..+|+.|.+.+-++.+.++-..-
T Consensus 373 SFD~glr~KMv~--~G-llP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~l 446 (791)
T KOG1222|consen 373 SFDSGLRPKMVN--GG-LLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLAL 446 (791)
T ss_pred cccccccHHHhh--cc-chHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHH
Confidence 998887778887 75 99999999976543 35578889999888766666554 48999999987666333333333
Q ss_pred HHHHHHhCCCCcchHHHHhhCc-------------------------------------HHHHHHHhhcccchhhhHHHH
Q 014913 260 LEVLVNICPWGRNRIKGVEAGA-------------------------------------VSILIDLLLDSSLERRASEMI 302 (416)
Q Consensus 260 ~~aL~nLs~~~~n~~~i~~~G~-------------------------------------v~~Lv~lL~~~~~~~~~~~~a 302 (416)
...-.|||.+..|...+++-.+ |.-|...+... .++...-.+
T Consensus 447 ia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd-~~E~F~~EC 525 (791)
T KOG1222|consen 447 IALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKND-NSESFGLEC 525 (791)
T ss_pred HHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcC-chHHHHHHH
Confidence 3333467766665544433222 33333333333 256677889
Q ss_pred HHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcCh--hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc
Q 014913 303 LTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQ--VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV 379 (416)
Q Consensus 303 ~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~ 379 (416)
+++|.||...+-.+..+......||-+-..|..+.. ..+-..+.++...++ +..+...+..+|.|+.|+++|++
T Consensus 526 lGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~---d~~cA~Lla~a~~i~tlieLL~a 601 (791)
T KOG1222|consen 526 LGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR---DLDCARLLAPAKLIDTLIELLQA 601 (791)
T ss_pred HHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh---hhHHHHHhCccccHHHHHHHHHh
Confidence 999999999888888888878888887776654422 233333333333333 34478888899999999999986
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.10 E-value=4.6e-11 Score=77.43 Aligned_cols=37 Identities=24% Similarity=0.644 Sum_probs=24.0
Q ss_pred CcCccccCCC----ceecCCcCcccHHHHHHHHHcC--CCCCCC
Q 014913 12 CPISLAIMKD----PVTVPTGITYDRESIEKWLFAG--KNNTCP 49 (416)
Q Consensus 12 Cpic~~~~~~----Pv~l~cght~c~~ci~~~~~~~--~~~~CP 49 (416)
||||++ |.+ |++|+|||+||+.||+++++.+ +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 367787
No 36
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.09 E-value=1.5e-08 Score=96.01 Aligned_cols=292 Identities=13% Similarity=0.135 Sum_probs=209.3
Q ss_pred CChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 93 INKAQITKLLNEAAKS-PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 93 ~~~~~i~~lv~~l~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
++++.++.|.+...++ -+.-.+...+|.++|.++.++|..|.+.||-..++.+|+.... -++..+.+...-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs--------~d~~ane~~~~v 155 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCS--------KDNPANEEYSAV 155 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccc--------cCCccHHHHHHH
Confidence 3455666666666333 3777888999999999999999999999998888888876421 001123455666
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc--CCHHHHHHHHHHHHHhhcc-cCchhhHhhhhhHHHHHHHHhc
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR--GTYESRAYAVLLLKSMLEV-AEPMQLISLRQELFVEVIQVLH 248 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~ 248 (416)
+...|.|-..+.++.+.-+. ..| .++.|...+.- .+.+..+.....-++|.+. .++-.....+....-.|+++|.
T Consensus 156 ~~g~l~Ny~l~~~~l~aq~~-~~g-Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~ 233 (604)
T KOG4500|consen 156 AFGVLHNYILDSRELRAQVA-DAG-VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLP 233 (604)
T ss_pred HHHHHHHhhCCcHHHHHHHH-hcc-cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHH
Confidence 77789998887776665555 374 99999988864 4677777777766666543 2333333444466778888887
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc------chhhhHHHHHHHHHHHcCChhhHHHHHhc
Q 014913 249 DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS------LERRASEMILTVLDLLCQCAEGRAELLKH 322 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~------~~~~~~~~a~~~L~~La~~~~~~~~i~~~ 322 (416)
....+...+-....|...+.++..+-.+++.|.+.-++.+++.-. +....-..++....-|..+++.-..+..+
T Consensus 234 ~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~ 313 (604)
T KOG4500|consen 234 SMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHAD 313 (604)
T ss_pred HhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcC
Confidence 665677788888999999999999999999999999999998621 11222233444444555666676777774
Q ss_pred CCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc----CCcHHHHHHHHHHHHHHH
Q 014913 323 GAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV----DNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 323 ~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~----~~~~~~k~~A~~ll~~l~ 397 (416)
...+..++..+.+.+......++-++.|+++.+. ....+++.|.+.+|+++|.. +|+-+.+..+..+|+++.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~---~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD---ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch---HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 4466777777777777888888889999999876 58888999999999999854 334455566667777653
No 37
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.01 E-value=2.5e-10 Score=74.28 Aligned_cols=40 Identities=38% Similarity=0.882 Sum_probs=36.5
Q ss_pred CcCccccCCCce-ecCCcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 12 CPISLAIMKDPV-TVPTGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 12 Cpic~~~~~~Pv-~l~cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
||||.+.+.+|+ +++|||+||+.||.+|++..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 8899999999999999995447889987
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.98 E-value=1.2e-10 Score=80.41 Aligned_cols=59 Identities=20% Similarity=0.398 Sum_probs=33.0
Q ss_pred CcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHH
Q 014913 8 TFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLI 71 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i 71 (416)
+-++|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|+.+.. ..++..|..+..+|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw-~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAW-IQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S--SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHH-HHHHHhhhhhhccC
Confidence 457999999999999976 99999999999886542 4999999987 78898998887765
No 39
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-10 Score=99.34 Aligned_cols=56 Identities=30% Similarity=0.557 Sum_probs=49.4
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcC-CCCCCCCCCccccCCCCCCCc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG-KNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~~~~~l~~n 64 (416)
.+|-|.||++.-+|||++.|||-||..||.+|+... ....||+|+..++ .+.++|-
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs-~~~vvPl 102 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS-IDTVVPL 102 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccc-cceEEee
Confidence 469999999999999999999999999999998752 3678999999998 7777774
No 40
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.9e-07 Score=89.78 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=198.8
Q ss_pred CCCCCCChHHHHHHHHHHhc----CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCC
Q 014913 88 TPKPPINKAQITKLLNEAAK----SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLH 163 (416)
Q Consensus 88 ~~~~~~~~~~i~~lv~~l~~----~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~ 163 (416)
.|+.+.-++++..+-+.++. ....-..|+--|.+++.+-. .-..+++-..|..||+.|..+
T Consensus 252 ~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~-~ElKMrrkniV~mLVKaLdr~-------------- 316 (791)
T KOG1222|consen 252 KPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDIS-VELKMRRKNIVAMLVKALDRS-------------- 316 (791)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHhHHHHHHHHHccc--------------
Confidence 34444456778888887752 23444556777888887643 566678889999999999988
Q ss_pred CCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 164 ESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 164 ~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
+.++.-.....|..|+...++...+.. . +.+..|+++.....++.+......|+|++++...+..+ +..|.+|.|
T Consensus 317 -n~~Ll~lv~~FLkKLSIf~eNK~~M~~--~-~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KM-v~~GllP~l 391 (791)
T KOG1222|consen 317 -NSSLLTLVIKFLKKLSIFDENKIVMEQ--N-GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKM-VNGGLLPHL 391 (791)
T ss_pred -chHHHHHHHHHHHHhhhhccchHHHHh--c-cHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHH-hhccchHHH
Confidence 477888888899999988876544443 6 49999999999999999999999999999886655554 556999999
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcC
Q 014913 244 IQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHG 323 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~ 323 (416)
+.+|.++ .-...|+..|+.+|.+++.+.-+.--.+|+.|.+.+-++. +.++--...+.--|||.+..|.+-+.+ .
T Consensus 392 ~~ll~~d---~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~-~~~vdl~lia~ciNl~lnkRNaQlvce-G 466 (791)
T KOG1222|consen 392 ASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGT-GSEVDLALIALCINLCLNKRNAQLVCE-G 466 (791)
T ss_pred HHHhCCc---ccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcC-CceecHHHHHHHHHHHhccccceEEec-C
Confidence 9999876 3345789999999999999988888999999999988763 344433333344589988888777777 7
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
.|+..|++.-.+..+ -.-..++.+++.+.+. ....++. -|..|...+..+.++.---.+...|.+|.
T Consensus 467 qgL~~LM~ra~k~~D---~lLmK~vRniSqHeg~--tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~ 533 (791)
T KOG1222|consen 467 QGLDLLMERAIKSRD---LLLMKVVRNISQHEGA--TQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLK 533 (791)
T ss_pred cchHHHHHHHhcccc---hHHHHHHHHhhhccch--HHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcc
Confidence 888888875443322 2234577888988763 3444433 45566666655434443333444444443
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.95 E-value=2.1e-08 Score=96.03 Aligned_cols=217 Identities=16% Similarity=0.094 Sum_probs=154.6
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhhc------CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 97 QITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESA------GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 97 ~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~------G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
.+..++..+.++++.....+.-+..+..+++...+.+... ....++++++.++ |.-++.
T Consensus 59 ~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---------------D~~i~~ 123 (312)
T PF03224_consen 59 LFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---------------DSFIQL 123 (312)
T ss_dssp ---HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---------------SHHHHH
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---------------CHHHHH
Confidence 3445555553456888889999999999988666666652 2678888888777 588999
Q ss_pred HHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc----CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHH
Q 014913 171 EALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR----GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQV 246 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 246 (416)
.|+.+|..+....+....... . +.++.+++.|.+ ++.+.+..|+.+|.+|....+++..+.. .|+++.|+.+
T Consensus 124 ~a~~iLt~Ll~~~~~~~~~~~--~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~i 199 (312)
T PF03224_consen 124 KAAFILTSLLSQGPKRSEKLV--K-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDI 199 (312)
T ss_dssp HHHHHHHHHHTSTTT--HHHH--H-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccccchH--H-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHH
Confidence 999999988766544333222 2 377888888775 4566778999999999988777776655 6999999999
Q ss_pred h------ccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh--hHHH
Q 014913 247 L------HDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE--GRAE 318 (416)
Q Consensus 247 L------~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~--~~~~ 318 (416)
| .+......+-.++-+||-|+.+++....+.+.+.|+.|+++++... .+.+.+.++++|.||...+. ....
T Consensus 200 L~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~ 278 (312)
T PF03224_consen 200 LRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIEL 278 (312)
T ss_dssp HH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred HHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHH
Confidence 9 3333668889999999999999999999999999999999998875 67899999999999998766 6667
Q ss_pred HHhcCCchHHHHHHHHh
Q 014913 319 LLKHGAGLAIVSKKILR 335 (416)
Q Consensus 319 i~~~~~~v~~Lv~~l~~ 335 (416)
++. +++..+++.|..
T Consensus 279 mv~--~~~l~~l~~L~~ 293 (312)
T PF03224_consen 279 MVL--CGLLKTLQNLSE 293 (312)
T ss_dssp HHH--H-HHHHHHHHHS
T ss_pred HHH--ccHHHHHHHHhc
Confidence 766 345555554553
No 42
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.4e-08 Score=91.72 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=151.5
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
+.+-++.|+.-|..++.+-++-..++. .| +..+++..|++++.++|+.|+++|..++.++......+.+.|+++.|+
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~--~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLIS--LG-GLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhh--cc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 466788888889888877776666766 64 999999999999999999999999999988777676777779999999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcC
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHG 323 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~ 323 (416)
.+|....+..++..|+.|+++|-.+.. ....+...++...|..+|.+...+..++..++..+..|......-..+....
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999976467888999999999987665 7788888888999999999854488999999999999988655544466644
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCC
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFS 355 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~ 355 (416)
+....++.+.........+.++.++..+....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 54455555444456688999998888766544
No 43
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.93 E-value=4.5e-10 Score=100.24 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=58.0
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
.-++|-||.++|+-|+.++||||||..||.+++.+ ++.||+|++... ..-+.-+..++..++.|...
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~-esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPC-ESRLRGSSGSREINESHARN 90 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHH-hhhcccchhHHHHHHhhhhc
Confidence 44799999999999999999999999999999976 789999999887 66777777777777777554
No 44
>PRK09687 putative lyase; Provisional
Probab=98.91 E-value=8e-08 Score=90.12 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=56.5
Q ss_pred cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHH
Q 014913 138 AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAV 217 (416)
Q Consensus 138 ~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~ 217 (416)
.++.|+..|.+. +..++..|+.+|..+-. . ..++.+..+++++++.+|..|+
T Consensus 24 ~~~~L~~~L~d~---------------d~~vR~~A~~aL~~~~~------------~-~~~~~l~~ll~~~d~~vR~~A~ 75 (280)
T PRK09687 24 NDDELFRLLDDH---------------NSLKRISSIRVLQLRGG------------Q-DVFRLAIELCSSKNPIERDIGA 75 (280)
T ss_pred cHHHHHHHHhCC---------------CHHHHHHHHHHHHhcCc------------c-hHHHHHHHHHhCCCHHHHHHHH
Confidence 366677777655 46677777777664421 1 2555666666667777777777
Q ss_pred HHHHHhhcccCchhhHhhhhhHHHHHHHH-hccCCChHHHHHHHHHHHHhCC
Q 014913 218 LLLKSMLEVAEPMQLISLRQELFVEVIQV-LHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 218 ~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~~~~~~A~~aL~nLs~ 268 (416)
++|+.|...... ....++.|..+ +++. ++.++..|+.+|.+++.
T Consensus 76 ~aLg~lg~~~~~------~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 76 DILSQLGMAKRC------QDNVFNILNNLALEDK-SACVRASAINATGHRCK 120 (280)
T ss_pred HHHHhcCCCccc------hHHHHHHHHHHHhcCC-CHHHHHHHHHHHhcccc
Confidence 777776432111 11355666655 3344 66677777777776643
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.91 E-value=2.1e-07 Score=101.33 Aligned_cols=226 Identities=16% Similarity=0.066 Sum_probs=132.3
Q ss_pred ChHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 94 NKAQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 94 ~~~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
+...+..|+..|. .++.+|..|+..|..+. ..++++.|+..|+++ ++.++..|
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~---------------d~~VR~~A 672 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDG---------------AAAVRRAA 672 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC---------------CHHHHHHH
Confidence 3456677888886 35799999999887763 235688999999766 58899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+.+|..+... . ...+.|...|+++++.+|..|+.+|..+... -...|+..|++. +
T Consensus 673 a~aL~~l~~~-----------~-~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~-d 727 (897)
T PRK13800 673 AEGLRELVEV-----------L-PPAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDP-D 727 (897)
T ss_pred HHHHHHHHhc-----------c-CchHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCC-C
Confidence 8888766311 1 1234455555556666666666666554210 112334444444 4
Q ss_pred hHHHHHHHHHHHHhCC---------CCc--chHHHH---------hhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 253 QQASKSALEVLVNICP---------WGR--NRIKGV---------EAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~---------~~~--n~~~i~---------~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
..++..|+.+|..+-. +++ .|...+ +.+.++.|..++.+. ++.++..|+.+|..+-..
T Consensus 728 ~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~ 805 (897)
T PRK13800 728 HRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDP--DPLVRAAALAALAELGCP 805 (897)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCC--CHHHHHHHHHHHHhcCCc
Confidence 4555555544443210 000 010000 112367777777776 677777777777776332
Q ss_pred hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHH
Q 014913 313 AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREV 392 (416)
Q Consensus 313 ~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~l 392 (416)
. ..++.++..+.+.+..++..|+.+|..+... -+++.|+.+|.++ +...|..|+..
T Consensus 806 ~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-------------~a~~~L~~~L~D~-~~~VR~~A~~a 861 (897)
T PRK13800 806 P----------DDVAAATAALRASAWQVRQGAARALAGAAAD-------------VAVPALVEALTDP-HLDVRKAAVLA 861 (897)
T ss_pred c----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-------------chHHHHHHHhcCC-CHHHHHHHHHH
Confidence 1 1123455555555556777777777665421 3457777777654 77788888777
Q ss_pred HHHH
Q 014913 393 LKLH 396 (416)
Q Consensus 393 l~~l 396 (416)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 7654
No 46
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.90 E-value=5.2e-10 Score=77.49 Aligned_cols=44 Identities=30% Similarity=0.678 Sum_probs=32.2
Q ss_pred CcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 8 TFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
-.++|||++..|++||.. .|||+|++.+|.+|+...+...||+.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~ 54 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVA 54 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCC
Confidence 358999999999999976 99999999999999965557889984
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-07 Score=94.95 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=192.0
Q ss_pred HHHHHHHHHHh--cCcHHHHHHHHHHHHHH-hcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 96 AQITKLLNEAA--KSPQMQIKCLKKLRSIA-AENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 96 ~~i~~lv~~l~--~~~~~~~~Al~~L~~l~-~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
..+..|++.|+ +++..|.+|+..|..+. ..+++.-..|--.-.||.||.+|+..+ +.++...|
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~--------------n~DIMl~A 232 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH--------------NFDIMLLA 232 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc--------------cHHHHHHH
Confidence 56778888887 47899999999998855 455544444555578999999999985 68999999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
+++|.+|+.--...-.++.+ . ++||.|+.-|.. .-.++.|++..+|..|+..+. +.+. .+|+|-..+..|.==
T Consensus 233 cRaltyl~evlP~S~a~vV~-~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL-~AG~l~a~LsylDFF- 306 (1051)
T KOG0168|consen 233 CRALTYLCEVLPRSSAIVVD-E-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAIL-QAGALSAVLSYLDFF- 306 (1051)
T ss_pred HHHHHHHHhhccchhheeec-c-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHH-hcccHHHHHHHHHHH-
Confidence 99999998654444556653 5 499999998876 567899999999999998743 3344 459999888888765
Q ss_pred ChHHHHHHHHHHHHhCCC--CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC----hhhHHHHHhcCCc
Q 014913 252 SQQASKSALEVLVNICPW--GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC----AEGRAELLKHGAG 325 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~--~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~----~~~~~~i~~~~~~ 325 (416)
+..+++.|+.+-.|.|.. .+.-..+++ ++|.|-.+|... +....|.++-++..++.. ++--.++.. .|.
T Consensus 307 Si~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~--D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dL 381 (1051)
T KOG0168|consen 307 SIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQ--DKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDL 381 (1051)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhH
Confidence 778999999999999863 344444544 699999999998 889999999999999753 223445555 577
Q ss_pred hHHHHHHHHhc----ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc
Q 014913 326 LAIVSKKILRV----SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV 379 (416)
Q Consensus 326 v~~Lv~~l~~~----~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~ 379 (416)
|...+++|.-. +....-..+..|..+|++... ....+.+.+....|..+|+.
T Consensus 382 i~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl--~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 382 ITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPL--LFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHHhcCcccccccchhHHHHHHHHHccCChH--HHHHHHHhhHHHHHHHHHhc
Confidence 77777744322 123444555566666666553 67777888888888888864
No 48
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.90 E-value=1.3e-09 Score=74.11 Aligned_cols=47 Identities=28% Similarity=0.488 Sum_probs=40.9
Q ss_pred CcccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+++.|+||++.+.+++.++|||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR--KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT--TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc--CCCCCcCChhhc
Confidence 46789999999999999999999 999999999984 789999998875
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.88 E-value=1.7e-06 Score=84.93 Aligned_cols=245 Identities=12% Similarity=0.064 Sum_probs=179.3
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccc----cCCccHHHHHHHhcCCHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGR----NGTFVDSLTQIMQRGTYES 212 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~----~G~~i~~Lv~lL~~~~~~~ 212 (416)
..+..++++|+..+ ..++..+.+..+..|...++.....+.+. . +...+++.+|.+++.-+
T Consensus 53 ~y~~~~l~ll~~~~--------------~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~-~~~~~fl~lL~~~d~~i 117 (429)
T cd00256 53 QYVKTFVNLLSQID--------------KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKK-KTWEPFFNLLNRQDQFI 117 (429)
T ss_pred HHHHHHHHHHhccC--------------cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccc-cchHHHHHHHcCCchhH
Confidence 57788889998763 47888999999998887766555555533 4 37788889999999999
Q ss_pred HHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc
Q 014913 213 RAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 213 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
...|+.+|..+.........-....-...-|...|++..+...+..++.+|.+|...++.|..+.+.++++.|+.+|+..
T Consensus 118 ~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~ 197 (429)
T cd00256 118 VHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA 197 (429)
T ss_pred HHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc
Confidence 99999999998754322211111111334556666654257888899999999999999999999999999999999875
Q ss_pred cchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCCC----ChHHHHHHHhc
Q 014913 293 SLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS-QVASERAVRILLSISKFSA----TNSVLQEMLQI 367 (416)
Q Consensus 293 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~----~~~~~~~i~~~ 367 (416)
..+..++-.++-+++.|+..++....+.. .+.|+.|++.+.... .++.+.++.+|.||..... .......|+..
T Consensus 198 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~ 276 (429)
T cd00256 198 TLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC 276 (429)
T ss_pred cccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc
Confidence 32457889999999999999886666655 689999999766553 4889999999999998542 12355677777
Q ss_pred ChHHHHHHHHhcC--CcHHHHHHHHHHHHHHHH
Q 014913 368 GVVAKLCLVLQVD--NSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 368 G~v~~L~~ll~~~--~~~~~k~~A~~ll~~l~~ 398 (416)
|+++.+ ..|+.. .+++..+--..+-..|..
T Consensus 277 ~l~~~l-~~L~~rk~~DedL~edl~~L~e~L~~ 308 (429)
T cd00256 277 KVLKTL-QSLEQRKYDDEDLTDDLKFLTEELKN 308 (429)
T ss_pred ChHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence 776655 555432 356666655555555555
No 50
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-09 Score=90.73 Aligned_cols=51 Identities=24% Similarity=0.533 Sum_probs=43.0
Q ss_pred CcccCcCccccCCC--ceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCC
Q 014913 8 TFFLCPISLAIMKD--PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECEL 61 (416)
Q Consensus 8 ~~~~Cpic~~~~~~--Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l 61 (416)
+-|.||||++-+.. ||.++|||.||+.||...++. ...||+|++.+. ..++
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt-~k~~ 182 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--TNKCPTCRKKIT-HKQF 182 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh--CCCCCCcccccc-hhhh
Confidence 44899999998877 556899999999999999986 578999998887 5444
No 51
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.2e-09 Score=96.56 Aligned_cols=51 Identities=18% Similarity=0.444 Sum_probs=45.2
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCC
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECE 60 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~ 60 (416)
+..+.|.+|++-+++|-.++|||-||..||..|.++ ...||.|++.++ +..
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e--k~eCPlCR~~~~-psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE--KAECPLCREKFQ-PSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc--ccCCCcccccCC-Ccc
Confidence 455999999999999999999999999999999987 456999999887 443
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.1e-07 Score=85.33 Aligned_cols=188 Identities=18% Similarity=0.152 Sum_probs=151.5
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK 187 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 187 (416)
+++.+..|+..|..++.+=+ |...+...|+..+++..|++. +..+++.|+++|...+.++....
T Consensus 96 ~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~---------------~~~lR~~Aa~Vigt~~qNNP~~Q 159 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENS---------------DAELRELAARVIGTAVQNNPKSQ 159 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHhcCHHHH
Confidence 56889999999999998765 999999999999999999887 58999999999999998877666
Q ss_pred hhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC-CChHHHHHHHHHHHH
Q 014913 188 SLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH-ISQQASKSALEVLVN 265 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~n 265 (416)
..+.+ . ++++.|+..|.+. +..++.+|..++..+..+...........+|...|..+++++ .+...+..++..|..
T Consensus 160 e~v~E-~-~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 160 EQVIE-L-GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHHH-c-ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 66663 5 4999999999875 567789999999999988775555555557799999999973 378889999999999
Q ss_pred hCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh
Q 014913 266 ICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 266 Ls~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~ 315 (416)
|.... .....+...|....++.+.... +.++.+.++.++..+......
T Consensus 238 Ll~~~~s~~d~~~~~~f~~~~~~l~~~l--~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 238 LLQEDKSDEDIASSLGFQRVLENLISSL--DFEVNEAALTALLSLLSELST 286 (342)
T ss_pred HHHhhhhhhhHHHHhhhhHHHHHHhhcc--chhhhHHHHHHHHHHHHHHhh
Confidence 87644 4555555567767777777776 788889888888777654333
No 53
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.81 E-value=3.7e-09 Score=94.99 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=41.4
Q ss_pred CCCcccCcCccccCCCc--------eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKDP--------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~P--------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..++..||||++.+.++ ++++|||+||+.||.+|+.. ..+||.|+..+.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 34568999999987764 55689999999999999875 679999998875
No 54
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.78 E-value=2.6e-09 Score=70.52 Aligned_cols=40 Identities=38% Similarity=0.860 Sum_probs=33.6
Q ss_pred cCcCccccCC---CceecCCcCcccHHHHHHHHHcCCCCCCCCCC
Q 014913 11 LCPISLAIMK---DPVTVPTGITYDRESIEKWLFAGKNNTCPMTK 52 (416)
Q Consensus 11 ~Cpic~~~~~---~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~ 52 (416)
.||||++.|. .++.++|||.|+..||.+|+.. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 4999999984 4557799999999999999987 56999985
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.75 E-value=2e-06 Score=93.70 Aligned_cols=228 Identities=13% Similarity=0.038 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 95 KAQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 95 ~~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
++.++.|+..|. .++.+|..|+..|..+....+ ..+.|...|.+. ++.++..|+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~---------------d~~VR~~A~ 705 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSP---------------DPVVRAAAL 705 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCC---------------CHHHHHHHH
Confidence 345667777775 346899999888887753211 124555566554 356666666
Q ss_pred HHHHhcCCChh-----------h--hhh---hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhh
Q 014913 174 SILCNLKISEL-----------G--LKS---LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQ 237 (416)
Q Consensus 174 ~~L~~l~~~~~-----------~--~~~---~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 237 (416)
.+|..+...+. . +.. .+. .. +..+.|..+|.+++.++|..++.+|..+... ..
T Consensus 706 ~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~-~~-~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~ 774 (897)
T PRK13800 706 DVLRALRAGDAALFAAALGDPDHRVRIEAVRALV-SV-DDVESVAGAATDENREVRIAVAKGLATLGAG---------GA 774 (897)
T ss_pred HHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHh-cc-cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cc
Confidence 65554321100 0 000 000 01 1345566677777777888777777776432 11
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~ 317 (416)
+.++.|..+++++ ++.++..|+.+|.++... ..+++.|+..|.+. +..++..|+.+|..+..
T Consensus 775 ~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~------ 836 (897)
T PRK13800 775 PAGDAVRALTGDP-DPLVRAAALAALAELGCP---------PDDVAAATAALRAS--AWQVRQGAARALAGAAA------ 836 (897)
T ss_pred hhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCC--ChHHHHHHHHHHHhccc------
Confidence 3478899999988 899999999999887332 12346788899887 88899999999987642
Q ss_pred HHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 318 ELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
...++.|+..|...+..++..|+.+|..+.. ++ ...+.|...++. .+...|+.|+..|.
T Consensus 837 -----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~---~~---------~a~~~L~~al~D-~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 -----DVAVPALVEALTDPHLDVRKAAVLALTRWPG---DP---------AARDALTTALTD-SDADVRAYARRALA 895 (897)
T ss_pred -----cchHHHHHHHhcCCCHHHHHHHHHHHhccCC---CH---------HHHHHHHHHHhC-CCHHHHHHHHHHHh
Confidence 3456888987777778999999999988621 11 245666677765 48899999998876
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.9e-07 Score=91.22 Aligned_cols=203 Identities=15% Similarity=0.176 Sum_probs=154.3
Q ss_pred CcchHHHHHHHHHh-cCCChhhh-hhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHH
Q 014913 165 SSRPVDEALSILCN-LKISELGL-KSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFV 241 (416)
Q Consensus 165 ~~~~~~~A~~~L~~-l~~~~~~~-~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 241 (416)
++..|.+|+.-|+. |...++.. .-+-. . ..+|.|+.+|+.. +.++.-.|+++|.+|+..-.....++++.++||
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv--~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIP 257 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPV--K-SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIP 257 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccH--H-HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchH
Confidence 46777777777764 44444433 22323 2 4899999999975 899999999999999988777777888889999
Q ss_pred HHHHHhc-cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC--hhhHHH
Q 014913 242 EVIQVLH-DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC--AEGRAE 318 (416)
Q Consensus 242 ~Lv~lL~-~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~--~~~~~~ 318 (416)
.|+.-|. -. ..++-+.++.||-.++.... ..+.++|++...+..|.=- +..++..|+++-.|+|.. ++.-.-
T Consensus 258 vl~~kL~~Ie-yiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFF--Si~aQR~AlaiaaN~Cksi~sd~f~~ 332 (1051)
T KOG0168|consen 258 VLLEKLLTIE-YIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFF--SIHAQRVALAIAANCCKSIRSDEFHF 332 (1051)
T ss_pred HHHHhhhhhh-hhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCccchH
Confidence 9998554 45 78999999999999987543 3578899999999999765 678999999999999984 333334
Q ss_pred HHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCC-CChHHHHHHHhcChHHHHHHHHh
Q 014913 319 LLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFS-ATNSVLQEMLQIGVVAKLCLVLQ 378 (416)
Q Consensus 319 i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~i~~~G~v~~L~~ll~ 378 (416)
++ .++|.|..+|...+.+..|.++.++..++... ..++..+++.+.|.|....+||.
T Consensus 333 v~---ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 333 VM---EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HH---HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 43 46899998777677788888888888877654 34456777777777766666653
No 57
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.68 E-value=2.1e-08 Score=66.30 Aligned_cols=43 Identities=40% Similarity=0.867 Sum_probs=37.7
Q ss_pred cCcCccccCCCceecC-CcCcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 11 LCPISLAIMKDPVTVP-TGITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~-cght~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
.|+||.+.+.+|+.+. |||.||..|+..|+..+ ...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~-~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG-KNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC-cCCCCCCCCc
Confidence 4999999998998774 99999999999999873 6789999864
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.64 E-value=1.2e-05 Score=78.86 Aligned_cols=278 Identities=11% Similarity=0.071 Sum_probs=184.7
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 98 ITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 98 i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
..+++..|.. +.-+...|...|..+...+..+.......-.+..|...|++.+ +...+.-++.+|
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~--------------~~~~~~~~v~~L 168 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT--------------NNDYVQTAARCL 168 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC--------------CcchHHHHHHHH
Confidence 4566666653 4467788888888887654432221111113345556665542 366788888999
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHHHhcC--CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQIMQRG--TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
..|...++-+..+.. . ++++.|+.+|+.. +...+=+++.+++-|++..+... .....+.|+.|+.+++......
T Consensus 169 ~~LL~~~~~R~~f~~--~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~-~~~~~~~i~~l~~i~k~s~KEK 244 (429)
T cd00256 169 QMLLRVDEYRFAFVL--A-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE-VLKRLSLIQDLSDILKESTKEK 244 (429)
T ss_pred HHHhCCchHHHHHHH--c-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH-hhccccHHHHHHHHHHhhhhHH
Confidence 998887776544554 5 4999999999863 56888899999999998866444 3345689999999999765778
Q ss_pred HHHHHHHHHHHhCCCC-------cchHHHHhhCcHHHHHHHhhccc-chhhhHHHH-------HHHHHHHcCChhhHHH-
Q 014913 255 ASKSALEVLVNICPWG-------RNRIKGVEAGAVSILIDLLLDSS-LERRASEMI-------LTVLDLLCQCAEGRAE- 318 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~-------~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~~~a-------~~~L~~La~~~~~~~~- 318 (416)
+.+-++.+|.||.... .....|++.|+ +++++.|.... .|+++.+.. -.....|+..++.+.+
T Consensus 245 vvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El 323 (429)
T cd00256 245 VIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSEL 323 (429)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999997633 24456777776 55666665442 244444322 2223344444443333
Q ss_pred -----------------------HHhcC-CchHHHHHHHHhc-ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHH
Q 014913 319 -----------------------LLKHG-AGLAIVSKKILRV-SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKL 373 (416)
Q Consensus 319 -----------------------i~~~~-~~v~~Lv~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L 373 (416)
+-++. ..+..|+++|... ++.....|+.=+..++++.+. -+..+-+.|+=..+
T Consensus 324 ~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~--gr~i~~~lg~K~~v 401 (429)
T cd00256 324 RSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR--GKDVVEQLGGKQRV 401 (429)
T ss_pred hcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc--HHHHHHHcCcHHHH
Confidence 32211 3346777766332 456666677777778888764 56667779999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHH
Q 014913 374 CLVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 374 ~~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
+.+|..+ +++.|..|-..+..+-
T Consensus 402 M~Lm~h~-d~~Vr~eAL~avQklm 424 (429)
T cd00256 402 MRLLNHE-DPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHhcCC-CHHHHHHHHHHHHHHH
Confidence 9999875 8999999988877663
No 59
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=3.8e-08 Score=62.73 Aligned_cols=39 Identities=56% Similarity=1.112 Sum_probs=35.3
Q ss_pred CcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 12 CPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 12 Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
|+||++...+|+.++|||.||..|+..|+..+ ...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~-~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG-NNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhC-cCCCCCC
Confidence 89999999999999999999999999999843 6789986
No 60
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-08 Score=96.17 Aligned_cols=69 Identities=26% Similarity=0.505 Sum_probs=59.6
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..+++.||||.++|++|++++|||+||+.||..++. ....||.|+. .. . .+.+|..+..+++.+...+.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~-~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-PS-R-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC-ch-h-ccCccHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999998 3789999996 43 3 77799999999888887653
No 61
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.57 E-value=1.2e-06 Score=70.67 Aligned_cols=135 Identities=15% Similarity=0.095 Sum_probs=118.8
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~ 317 (416)
+-+..||.-.....+.++++....-|.|.+.++-|-..+.+..+++..+.-|... ++.+++.+.+.|+|||....+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhccChHHHH
Confidence 6788888888876689999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHH
Q 014913 318 ELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVL 377 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll 377 (416)
-|++ .+|+|..+..+.+........|+.+|..|+-+... .+.++.+..++..+.+.-
T Consensus 94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt--~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT--ERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc--hhHHhccHHHHHHHHHHH
Confidence 9998 89999999877666678888999999999988765 688888777666665554
No 62
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.56 E-value=9.3e-07 Score=71.23 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=107.6
Q ss_pred ccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHH
Q 014913 197 FVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIK 275 (416)
Q Consensus 197 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 275 (416)
.++.||+-.+. .+.+.++....-|.|++.+. .+........++...|+.|... +..+++.+.+.|+|||.+..|++.
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHHH
Confidence 67777777765 58999999999999998774 4455556668999999999999 999999999999999999999999
Q ss_pred HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh-HHHHHhcCCchHHHHHHHH
Q 014913 276 GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG-RAELLKHGAGLAIVSKKIL 334 (416)
Q Consensus 276 i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~-~~~i~~~~~~v~~Lv~~l~ 334 (416)
|.++|++|.++..++++ .+.....|+.+|..|+..+.. |..+.. |.+|+.+.
T Consensus 95 I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~ 147 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSP--PEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQ 147 (173)
T ss_pred HHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHH
Confidence 99999999999999998 788899999999999886543 545544 45555554
No 63
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.54 E-value=6.8e-08 Score=63.61 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=34.7
Q ss_pred cCcCccccC---CCceecCCcCcccHHHHHHHHHcCCCCCCCCCCc
Q 014913 11 LCPISLAIM---KDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQ 53 (416)
Q Consensus 11 ~Cpic~~~~---~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~ 53 (416)
.|++|.+.+ ..|++++|||+||..|+.++. +....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 499999998 457788999999999999987 23678999974
No 64
>PHA02926 zinc finger-like protein; Provisional
Probab=98.51 E-value=8.3e-08 Score=83.36 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=41.0
Q ss_pred CCCcccCcCccccCCC---------ceecCCcCcccHHHHHHHHHcC----CCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKD---------PVTVPTGITYDRESIEKWLFAG----KNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~---------Pv~l~cght~c~~ci~~~~~~~----~~~~CP~~~~~l~ 56 (416)
..++..|+||++...+ ++..+|+|+||..||.+|.+.. ....||.|+..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4567899999988644 3556999999999999998742 2457999998876
No 65
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.51 E-value=1.4e-07 Score=87.24 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=39.6
Q ss_pred CcccCcCccc--cCCCc---eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCC
Q 014913 8 TFFLCPISLA--IMKDP---VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECE 60 (416)
Q Consensus 8 ~~~~Cpic~~--~~~~P---v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~ 60 (416)
++..||+|+. ++..- ++.+|||+||..|+.+.|..+ ...||.|+..+. ...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-~~~CP~C~~~lr-k~~ 57 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-SGSCPECDTPLR-KNN 57 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-CCCCCCCCCccc-hhh
Confidence 4568999996 44333 233799999999999998764 779999999987 444
No 66
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.50 E-value=2.5e-05 Score=80.39 Aligned_cols=245 Identities=17% Similarity=0.219 Sum_probs=173.2
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
.+|.+|.+|+.++..+...+++ .+... .++.+.++|.+. ++.++..|+.++..+...++..
T Consensus 126 ~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~---------------~~~V~~~a~~~l~~i~~~~~~~ 186 (526)
T PF01602_consen 126 PSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK---------------DPSVVSAALSLLSEIKCNDDSY 186 (526)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS---------------SHHHHHHHHHHHHHHHCTHHHH
T ss_pred CchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC---------------cchhHHHHHHHHHHHccCcchh
Confidence 4679999999999999887653 23333 699999999766 5889999999999881122221
Q ss_pred hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
..++. ..++.|.+++...++-.+.....+|..++......... ...++.+..++++. +..+.-.++.++..+
T Consensus 187 ~~~~~----~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l 258 (526)
T PF01602_consen 187 KSLIP----KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKL 258 (526)
T ss_dssp TTHHH----HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhhHH----HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHh
Confidence 23343 37777777778889999999999998887543222211 36889999999987 889999999999988
Q ss_pred CCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHH-hcChhhhHHHH
Q 014913 267 CPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKIL-RVSQVASERAV 345 (416)
Q Consensus 267 s~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~-~~~~~~~~~a~ 345 (416)
..... .-..++++|+.+|.+. ++.++..++..|..++... ...+.. ....+..+. ..+...+..++
T Consensus 259 ~~~~~-----~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~~l~~~~--~~~v~~----~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 259 SPSPE-----LLQKAINPLIKLLSSS--DPNVRYIALDSLSQLAQSN--PPAVFN----QSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp SSSHH-----HHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHCCHC--HHHHGT----HHHHHHHHHCSSSHHHHHHHH
T ss_pred hcchH-----HHHhhHHHHHHHhhcc--cchhehhHHHHHHHhhccc--chhhhh----hhhhhheecCCCChhHHHHHH
Confidence 77555 3345789999999977 8889999999999998854 222221 222333455 44668999999
Q ss_pred HHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 346 RILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 346 ~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
.+|..++... .... +++.|...++..++...++.+...+..+..-+
T Consensus 326 ~lL~~l~~~~----n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~ 371 (526)
T PF01602_consen 326 DLLYKLANES----NVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF 371 (526)
T ss_dssp HHHHHH--HH----HHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccc----chhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence 9999999632 2333 57777777744346667888777777666644
No 67
>PF05536 Neurochondrin: Neurochondrin
Probab=98.44 E-value=3.7e-05 Score=78.68 Aligned_cols=238 Identities=15% Similarity=0.079 Sum_probs=157.2
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh---hhhhccccCCccHHHHHHHhc-------C
Q 014913 139 VEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL---KSLVMGRNGTFVDSLTQIMQR-------G 208 (416)
Q Consensus 139 i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~---~~~i~~~~G~~i~~Lv~lL~~-------~ 208 (416)
+...+++|++. +-+-+-.++..+.++..+++.. ++.|.+.- +.++|-.+|++ +
T Consensus 7 l~~c~~lL~~~---------------~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~ai--g~~Fl~RLL~t~~~~~~~~ 69 (543)
T PF05536_consen 7 LEKCLSLLKSA---------------DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAI--GFKFLDRLLRTGSVPSDCP 69 (543)
T ss_pred HHHHHHHhccC---------------CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc--ChhHHHHHhcCCCCCCCCC
Confidence 55567788776 2234555666777777665532 22344333 67999999987 3
Q ss_pred CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh-HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHH
Q 014913 209 TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ-QASKSALEVLVNICPWGRNRIKGVEAGAVSILID 287 (416)
Q Consensus 209 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~ 287 (416)
....+.-|..+|..++..++-...--. .+-||.|+.++... +. ++...|..+|..++.+++.+..+++.|+|+.|.+
T Consensus 70 ~~~~~~LavsvL~~f~~~~~~a~~~~~-~~~IP~Lle~l~~~-s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCRDPELASSPQM-VSRIPLLLEILSSS-SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHHcCChhhhcCHHH-HHHHHHHHHHHHcC-CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence 366788899999999986543322212 26899999999887 55 9999999999999999999999999999999999
Q ss_pred HhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh----cChhhhHHHHHHHHHHhcCCC---ChHH
Q 014913 288 LLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR----VSQVASERAVRILLSISKFSA---TNSV 360 (416)
Q Consensus 288 lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~----~~~~~~~~a~~~L~~L~~~~~---~~~~ 360 (416)
.+.+. +...+.|+.+|.++...... ...-++...+..++..|.+ .....+-..+..|..+-...+ ....
T Consensus 148 i~~~~---~~~~E~Al~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~ 223 (543)
T PF05536_consen 148 IIPNQ---SFQMEIALNLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESP 223 (543)
T ss_pred HHHhC---cchHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccC
Confidence 99885 56789999999999775332 1221223333333333332 233445555666666544432 0001
Q ss_pred HHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 361 LQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 361 ~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
...-.-..+..-|..+|++.-+++.|..|-.+...|-.+
T Consensus 224 ~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 224 PSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred ChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 111122345555666778887888888887777766665
No 68
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.43 E-value=6.9e-05 Score=77.14 Aligned_cols=276 Identities=17% Similarity=0.162 Sum_probs=188.7
Q ss_pred CCchhHHHHHHHHHHhccCCCCCCCCCCCCCCChHH----HHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhc
Q 014913 62 TPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQ----ITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESA 136 (416)
Q Consensus 62 ~~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~ 136 (416)
..+...+++.--+...-.. .+++. +-.+.+.|.+ ++..|.-|+..|.++.. ++..+.
T Consensus 53 s~~~~~Krl~yl~l~~~~~------------~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~---- 114 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLH------------EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP---- 114 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTT------------TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH----
T ss_pred CCCHHHHHHHHHHHHHHhh------------cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH----
Confidence 5666777777666655321 11232 2344555543 56889999999999873 323322
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
.++.+.++|.+. ++-+|+.|+.++..+.... ...+. . ..++.+.++|.+.++.++..|
T Consensus 115 -l~~~v~~ll~~~---------------~~~VRk~A~~~l~~i~~~~---p~~~~--~-~~~~~l~~lL~d~~~~V~~~a 172 (526)
T PF01602_consen 115 -LIPDVIKLLSDP---------------SPYVRKKAALALLKIYRKD---PDLVE--D-ELIPKLKQLLSDKDPSVVSAA 172 (526)
T ss_dssp -HHHHHHHHHHSS---------------SHHHHHHHHHHHHHHHHHC---HCCHH--G-GHHHHHHHHTTHSSHHHHHHH
T ss_pred -HHHHHHHHhcCC---------------chHHHHHHHHHHHHHhccC---HHHHH--H-HHHHHHhhhccCCcchhHHHH
Confidence 478889999877 5899999999999886442 23443 2 148899999999999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchh
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLER 296 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~ 296 (416)
+.++..+ .. ......-.-...+..|.+++... ++-.+...+..|..++........- ...++.+..++.+. ++
T Consensus 173 ~~~l~~i-~~-~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~--~~ 245 (526)
T PF01602_consen 173 LSLLSEI-KC-NDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS--SP 245 (526)
T ss_dssp HHHHHHH-HC-THHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH--HH
T ss_pred HHHHHHH-cc-CcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc--cc
Confidence 9999999 11 11110111235667777777777 8899999999999988755432211 56788899999877 88
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHH
Q 014913 297 RASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLV 376 (416)
Q Consensus 297 ~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~l 376 (416)
.+.-.++.++..+..... +. ..+++.|++++.+.+...+..++..|..++.... ..+. .....+..
T Consensus 246 ~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~------~~v~--~~~~~~~~ 311 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP------PAVF--NQSLILFF 311 (526)
T ss_dssp HHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH------HHHG--THHHHHHH
T ss_pred HHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhcccc------hhhh--hhhhhhhe
Confidence 999999999999988765 32 2567889998876667799999999999998651 1222 22333344
Q ss_pred HhcCCcHHHHHHHHHHHHHHHH
Q 014913 377 LQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 377 l~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+..+.+...|.+|..+|..+..
T Consensus 312 l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 312 LLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH--
T ss_pred ecCCCChhHHHHHHHHHhhccc
Confidence 5533477888888887776654
No 69
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.4e-07 Score=83.98 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=42.2
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHH-HHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEK-WLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~-~~~~~~~~~CP~~~~~l~ 56 (416)
.+|+|+||.+.+.+|+.++|||.||..||.. |-.+. ...||.|++...
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-YEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhc-cccCchhhhhcc
Confidence 5899999999999999999999999999999 76653 567999987664
No 70
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.37 E-value=2.5e-05 Score=78.22 Aligned_cols=251 Identities=14% Similarity=0.127 Sum_probs=157.9
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
++......|+.++..+++.-...|..+-...++.+||++|..+ +..++..++.+|+|+...-.+.
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp---------------~~~i~~~~lgai~NlVmefs~~ 453 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP---------------EIMIMGITLGAICNLVMEFSNL 453 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc---------------chhHHHHHHHHHHHHHhhcccH
Confidence 4567888889999998887666777777789999999999655 4778999999999998765544
Q ss_pred hh-hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhh-HHHHHHHHhccCCChHHHHHHHHHHH
Q 014913 187 KS-LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQE-LFVEVIQVLHDHISQQASKSALEVLV 264 (416)
Q Consensus 187 ~~-~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv~lL~~~~~~~~~~~A~~aL~ 264 (416)
+. ++. . |+|..+.+++.+.+..++..+.|+|+++..++++.....-... +-..|+.+..++ ++++++.+...|+
T Consensus 454 kskfl~--~-ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 454 KSKFLR--N-NGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLR 529 (678)
T ss_pred HHHHHH--c-CcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 44 554 6 4999999999999999999999999999988776655433323 234556666666 9999999999999
Q ss_pred HhCCC-CcchHHHHhh--CcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhc----
Q 014913 265 NICPW-GRNRIKGVEA--GAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRV---- 336 (416)
Q Consensus 265 nLs~~-~~n~~~i~~~--G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~---- 336 (416)
||.-+ .+....+.+. ..+......++-.+..+-..+.. ..+.++.. .+.......+ +-.+.++- +...
T Consensus 530 Nl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~-~~~~~l~~~~d~~~~~am~--~~fk~lvl-~~e~~~n~ 605 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFL-AKKMRLLNPLDTQQKKAME--GIFKILVL-LAEVNENK 605 (678)
T ss_pred HhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhH-HHHHHhccchhHHHHHHHH--HHHHHHHH-HHHHHHHH
Confidence 99654 3444444442 22233333332222133333333 33444433 3322333332 44444442 2211
Q ss_pred ---C--hhhhHHHHHHHHHHhcCCCChHHHHHHHh-cChHHHHHHHHhcC
Q 014913 337 ---S--QVASERAVRILLSISKFSATNSVLQEMLQ-IGVVAKLCLVLQVD 380 (416)
Q Consensus 337 ---~--~~~~~~a~~~L~~L~~~~~~~~~~~~i~~-~G~v~~L~~ll~~~ 380 (416)
+ ....-++.+.+.++............+.. .|+.........++
T Consensus 606 ~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~~n~i~e~~~k~~~sd 655 (678)
T KOG1293|consen 606 KQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLKLNCIWELNNKLWNSD 655 (678)
T ss_pred HhhccHHHHHHHHHHHHHhccCCCCCcccchhhccccceechhhhcccch
Confidence 1 13344555556666554433334445443 55555555544333
No 71
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9.4e-08 Score=97.23 Aligned_cols=54 Identities=15% Similarity=0.327 Sum_probs=47.6
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCC
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECEL 61 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l 61 (416)
+.+-++||+|..-++|-|++.|||.||..||...+... ...||.|+..|. ..++
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-qRKCP~Cn~aFg-anDv 693 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-QRKCPKCNAAFG-ANDV 693 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-cCCCCCCCCCCC-cccc
Confidence 34568999999999999999999999999999999875 789999999997 4444
No 72
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00012 Score=77.81 Aligned_cols=275 Identities=19% Similarity=0.170 Sum_probs=176.0
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhc--CcHHHHHHHhccCCCCCC-C--CCCCCCCCCCcchHHHHHHHHHhcCCC
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESA--GAVEFLASFVTNSNAMEE-S--PEGFDNLHESSRPVDEALSILCNLKIS 182 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~-~--~~~~~~~~~~~~~~~~A~~~L~~l~~~ 182 (416)
++..|..|+..|-.+++.-+...+.-... -.++.+..++.....+.. + .....++ .......|..+|-.++.+
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~--~~~~~~~A~~~lDrlA~~ 339 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD--EETPYRAAEQALDRLALH 339 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc--ccCcHHHHHHHHHHHHhc
Confidence 45888889998888887644433333332 345666666654332200 0 0111111 122345566777777765
Q ss_pred hhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHH
Q 014913 183 ELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEV 262 (416)
Q Consensus 183 ~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 262 (416)
=.. +.+. + -.++.+-.+|++.+..-|..|..+|..++.... +..+..-...++..+..|+++ .+.+|-+|+.|
T Consensus 340 L~g--~~v~--p-~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~Dp-hprVr~AA~na 412 (1075)
T KOG2171|consen 340 LGG--KQVL--P-PLFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDP-HPRVRYAALNA 412 (1075)
T ss_pred CCh--hheh--H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHH
Confidence 432 2333 3 278888888999999999999999999986633 333334446778888888888 99999999999
Q ss_pred HHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHH----HHH-hc
Q 014913 263 LVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSK----KIL-RV 336 (416)
Q Consensus 263 L~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~----~l~-~~ 336 (416)
|..++.+-. ....-...-++|.|+..+.+.. ++.++.+|+.+|-|.+..-.+ .++. .-++.|++ .|. +.
T Consensus 413 igQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~~--~~l~--pYLd~lm~~~l~~L~~~~ 487 (1075)
T KOG2171|consen 413 IGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECDK--SILE--PYLDGLMEKKLLLLLQSS 487 (1075)
T ss_pred HHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCcH--HHHH--HHHHHHHHHHHHHHhcCC
Confidence 999998654 3333344557778899888763 678999999999999764222 1222 22333333 333 44
Q ss_pred ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHH---HHHHHHHHHHHHHHh
Q 014913 337 SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMK---TKDKAREVLKLHARA 399 (416)
Q Consensus 337 ~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~---~k~~A~~ll~~l~~~ 399 (416)
++.+++.++.++..++...++ ...... .-.+|.|..+|++...+. .|.+....+..+.+.
T Consensus 488 ~~~v~e~vvtaIasvA~AA~~-~F~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A 550 (1075)
T KOG2171|consen 488 KPYVQEQAVTAIASVADAAQE-KFIPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARA 550 (1075)
T ss_pred chhHHHHHHHHHHHHHHHHhh-hhHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence 678999999999999976543 233332 246788888888753333 445555566666554
No 73
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.36 E-value=5.2e-07 Score=81.23 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=56.1
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
+.||+|+.++++|+-+ +|||+||..||+..+.+. .+.||.|...--.-+.+.|+...+..|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 8999999999999987 899999999999998875 799999965221145788888888888888763
No 74
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=4.1e-07 Score=88.35 Aligned_cols=55 Identities=24% Similarity=0.399 Sum_probs=46.6
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcC---CCCCCCCCCccccCCCCCCC
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG---KNNTCPMTKQVLSSECELTP 63 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~---~~~~CP~~~~~l~~~~~l~~ 63 (416)
.+..||||++...-|+.+.|||.||-.||-+||... +...||.|+..+. ..++.|
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~-~kdl~p 242 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTIT-LKDLLP 242 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcc-ccceee
Confidence 378999999999999999999999999999999864 3678999998887 544433
No 75
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00022 Score=65.66 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=180.4
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.+..++..+++ +|.+|..|+..|..+... ..+..... .-.++.+.+++... ++ -+.|+.
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~---------------~~--~~~a~~ 64 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDL---------------DP--AEPAAT 64 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCc---------------cc--ccHHHH
Confidence 35567777753 688999999888888776 23333332 35688888988766 23 567999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhh------hhhHHHHHHHHhc
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISL------RQELFVEVIQVLH 248 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~g~i~~Lv~lL~ 248 (416)
+|.|++....-.+.++. ..++.++..+.+.....-...+.+|.|++..++....+.. +.|.+...+....
T Consensus 65 alVnlsq~~~l~~~ll~----~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d 140 (353)
T KOG2973|consen 65 ALVNLSQKEELRKKLLQ----DLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD 140 (353)
T ss_pred HHHHHHhhHHHHHHHHH----HHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC
Confidence 99999987766555655 3888899998887677778899999999988665544322 1344444455555
Q ss_pred cCCCh-HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHH-hhcccchhhh-HHHHHHHHHHHcCChhhHHHHHhcCCc
Q 014913 249 DHISQ-QASKSALEVLVNICPWGRNRIKGVEAGAVSILIDL-LLDSSLERRA-SEMILTVLDLLCQCAEGRAELLKHGAG 325 (416)
Q Consensus 249 ~~~~~-~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~l-L~~~~~~~~~-~~~a~~~L~~La~~~~~~~~i~~~~~~ 325 (416)
.+.+. .-...-+..+.||+.....|..+.+...+|.=.-+ +.+. +..+ +...+++|.|.|........+.. -.
T Consensus 141 ~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~--~s~vRr~GvagtlkN~cFd~~~h~~lL~--e~ 216 (353)
T KOG2973|consen 141 KSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSE--DSQVRRGGVAGTLKNCCFDAKLHEVLLD--ES 216 (353)
T ss_pred cccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccccc--chhhhccchHHHHHhhhccchhHHHHhc--ch
Confidence 44121 22345577788999999999988876644432111 1222 2233 35688999999998888777765 23
Q ss_pred hHHHHHHHHh-----------------------------cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHH
Q 014913 326 LAIVSKKILR-----------------------------VSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLV 376 (416)
Q Consensus 326 v~~Lv~~l~~-----------------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~l 376 (416)
+..|..+|.- .++..+..-+.+|..||.... -|+.+.+.|+-+. ++.
T Consensus 217 ~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~---GRe~lR~kgvYpi-lRE 292 (353)
T KOG2973|consen 217 INLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA---GREVLRSKGVYPI-LRE 292 (353)
T ss_pred HHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH---hHHHHHhcCchHH-HHH
Confidence 4444433320 134678888999999998654 3666666665554 455
Q ss_pred Hhc-CCcHHHHHHHHHHHHHHHH
Q 014913 377 LQV-DNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 377 l~~-~~~~~~k~~A~~ll~~l~~ 398 (416)
++. ..++..++.+-.+.+.+-+
T Consensus 293 lhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 293 LHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHh
Confidence 544 3467788888888888877
No 76
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.5e-07 Score=87.07 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=61.1
Q ss_pred CCCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 6 VPTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
+-.+|.||||+++++--+++ .|+|.||..||-..++.+ ...||.|++.+-....+.++..+-.+|.+....
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~g-n~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~s 111 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSG-NNECPTCRKKLVSKRSLRIDPNFDALISKIYPS 111 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc-CCCCchHHhhccccccCCCCccHHHHHHHHhcc
Confidence 45678999999999999988 799999999999999886 789999999986567888888888888776544
No 77
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.27 E-value=4.2e-07 Score=83.63 Aligned_cols=65 Identities=18% Similarity=0.357 Sum_probs=52.4
Q ss_pred CCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCC----CCCCchhHHHHHHHH
Q 014913 7 PTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSEC----ELTPNHTLRRLIQSW 74 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~----~l~~n~~l~~~i~~~ 74 (416)
-....|++|..||.|+.|+ .|=||||+.||-+++.+ ..+||.|+-.+- .. .+.++.++++++.++
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih-~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIH-KTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred ccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceecc-CccccccCCcchHHHHHHHHH
Confidence 3457899999999999977 89999999999999987 689999987775 33 345556666666554
No 78
>PF05536 Neurochondrin: Neurochondrin
Probab=98.26 E-value=4.1e-05 Score=78.42 Aligned_cols=200 Identities=16% Similarity=0.178 Sum_probs=140.6
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc----hhhHhhhhhHHHHHHHHhccCC------ChHHHHHHHHHHHHh
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP----MQLISLRQELFVEVIQVLHDHI------SQQASKSALEVLVNI 266 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~g~i~~Lv~lL~~~~------~~~~~~~A~~aL~nL 266 (416)
.+..-+++|++.+.+-|-.+...+.++....+. ++.+... =|.+.|-++|+++. ....+.-|+..|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 567778888888865666666666677765442 2234433 34688999998731 356778889999999
Q ss_pred CCCCcc--hHHHHhhCcHHHHHHHhhcccchh-hhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHH
Q 014913 267 CPWGRN--RIKGVEAGAVSILIDLLLDSSLER-RASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASER 343 (416)
Q Consensus 267 s~~~~n--~~~i~~~G~v~~Lv~lL~~~~~~~-~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~ 343 (416)
|..++. ...|+. -||.|++.+... +. .+...|+.+|..++.+++++.+++. .|+++.|++.+.+ .+...+.
T Consensus 85 ~~~~~~a~~~~~~~--~IP~Lle~l~~~--s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 85 CRDPELASSPQMVS--RIPLLLEILSSS--SDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred cCChhhhcCHHHHH--HHHHHHHHHHcC--CchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHH
Confidence 997773 355654 599999999887 55 8999999999999999999999999 7999999996665 6678999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCC
Q 014913 344 AVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPCV 406 (416)
Q Consensus 344 a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~ 406 (416)
|..+|.+++..... +... ...-.+..++.-+...-.....+.+..++..|..+....|..
T Consensus 159 Al~lL~~Lls~~~~-~~~~--~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~ 218 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQ-KSWA--EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPIL 218 (543)
T ss_pred HHHHHHHHHHhcch-hhhh--hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcc
Confidence 99999998876542 1111 112222233333322222334456677788888887777543
No 79
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.25 E-value=9.9e-07 Score=57.13 Aligned_cols=40 Identities=28% Similarity=0.292 Sum_probs=37.1
Q ss_pred CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 270 GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 270 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
++++..+++.|+||+|+++|.+. +.++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~--~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP--DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS--SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhC
Confidence 46889999999999999999988 99999999999999974
No 80
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=6.5e-05 Score=76.71 Aligned_cols=218 Identities=17% Similarity=0.122 Sum_probs=172.2
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC--CHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG--TYESRA 214 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~--~~~~~~ 214 (416)
..|+.|+.-+.++. -.+-++.|+..|..++.- .+..|+ . .|+++|+..|+.. ++++..
T Consensus 22 ETI~kLcDRvessT--------------L~eDRR~A~rgLKa~srk---YR~~Vg--a-~Gmk~li~vL~~D~~D~E~ik 81 (970)
T KOG0946|consen 22 ETIEKLCDRVESST--------------LLEDRRDAVRGLKAFSRK---YREEVG--A-QGMKPLIQVLQRDYMDPEIIK 81 (970)
T ss_pred hHHHHHHHHHhhcc--------------chhhHHHHHHHHHHHHHH---HHHHHH--H-cccHHHHHHHhhccCCHHHHH
Confidence 45788888887763 256688999999877632 345555 4 4999999999874 899999
Q ss_pred HHHHHHHHhhcccC------chh-----------hHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC--cchHH
Q 014913 215 YAVLLLKSMLEVAE------PMQ-----------LISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG--RNRIK 275 (416)
Q Consensus 215 ~a~~~L~~l~~~~~------~~~-----------~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~--~n~~~ 275 (416)
.+..++.++...++ +.. .++...+-|..|+..+... +..+|..+...|.+|-.+. +.+..
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ 160 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDA 160 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHH
Confidence 99999999987663 211 2234557888999999988 9999999999999985433 46666
Q ss_pred HHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc----ChhhhHHHHHHHHH
Q 014913 276 GVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV----SQVASERAVRILLS 350 (416)
Q Consensus 276 i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~----~~~~~~~a~~~L~~ 350 (416)
+.. --+|..|+.+|.+. .+.++..++-.|..|+.....-++++.-+++...|..++... +.-+.+-|...|.|
T Consensus 161 ll~~P~gIS~lmdlL~Ds--rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~N 238 (970)
T KOG0946|consen 161 LLVSPMGISKLMDLLRDS--REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNN 238 (970)
T ss_pred HHHCchhHHHHHHHHhhh--hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 554 57899999999987 788899999999999998777777777689999999977643 23578999999999
Q ss_pred HhcCCCChHHHHHHHhcChHHHHHHHHhc
Q 014913 351 ISKFSATNSVLQEMLQIGVVAKLCLVLQV 379 (416)
Q Consensus 351 L~~~~~~~~~~~~i~~~G~v~~L~~ll~~ 379 (416)
|-+++.. ....+.+.|-||.|..+|..
T Consensus 239 LLK~N~S--NQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 239 LLKNNIS--NQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred HHhhCcc--hhhHHhccccHHHHHhhcCc
Confidence 9988764 68888899999999988743
No 81
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00052 Score=73.20 Aligned_cols=276 Identities=15% Similarity=0.080 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhc-CcHHHHHHHhccCCCCCCC---------------------------------
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESA-GAVEFLASFVTNSNAMEES--------------------------------- 155 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~--------------------------------- 155 (416)
.+|..|+.++...+...+.++....+. ..+|.++..|.......++
T Consensus 174 ~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l 253 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSL 253 (1075)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 499999999999988776555555543 5677777777543211110
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccc-cCCccHHHHHHHhcCC----------------HHHHHHHHH
Q 014913 156 PEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGR-NGTFVDSLTQIMQRGT----------------YESRAYAVL 218 (416)
Q Consensus 156 ~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-~G~~i~~Lv~lL~~~~----------------~~~~~~a~~ 218 (416)
+.-+|.+. +..+|..|+..|..++.......+.-... . ..++.++.++.... ..-...|..
T Consensus 254 ~Ia~n~~l-~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~-~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~ 331 (1075)
T KOG2171|consen 254 EIAKNKEL-ENSIRHLALEFLVSLSEYAPAMCKKLALLGH-TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQ 331 (1075)
T ss_pred HHhhcccc-cHHHHHHHHHHHHHHHHhhHHHhhhchhhhc-cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHH
Confidence 12223222 35677778777776665422111111100 1 13444444443211 112445666
Q ss_pred HHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhh
Q 014913 219 LLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERR 297 (416)
Q Consensus 219 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~ 297 (416)
+|-.++.+=..+... .-..+.+-.+|.+. ++.-|++|+.||..++.+.. .-.... ..+++..+..|.++ ++.
T Consensus 332 ~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp--hpr 404 (1075)
T KOG2171|consen 332 ALDRLALHLGGKQVL---PPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP--HPR 404 (1075)
T ss_pred HHHHHHhcCChhheh---HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC--CHH
Confidence 666666543333221 23566777788888 99999999999999887553 211111 34777788888888 899
Q ss_pred hHHHHHHHHHHHcCC--hhhHHHHHhcCCchHHHHHHHHhc-ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 298 ASEMILTVLDLLCQC--AEGRAELLKHGAGLAIVSKKILRV-SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 298 ~~~~a~~~L~~La~~--~~~~~~i~~~~~~v~~Lv~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
++-.|+.++..++.+ ++-..... +-.++.|+..+.+. +++++.+|+.+|.|++.....+.+... . -+.+++++
T Consensus 405 Vr~AA~naigQ~stdl~p~iqk~~~--e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-L-d~lm~~~l 480 (1075)
T KOG2171|consen 405 VRYAALNAIGQMSTDLQPEIQKKHH--ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-L-DGLMEKKL 480 (1075)
T ss_pred HHHHHHHHHHhhhhhhcHHHHHHHH--HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-H-HHHHHHHH
Confidence 999999999999885 43344433 46677888866654 569999999999999887653222221 1 35666444
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+|...+++..|+.++..+.-...
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHH
Confidence 455455699999999998876665
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.12 E-value=2.7e-06 Score=55.08 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=36.7
Q ss_pred ChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcC
Q 014913 126 NETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLK 180 (416)
Q Consensus 126 ~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~ 180 (416)
+++++..|++.|+||.|+++|.+. +++++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------------~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---------------DPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---------------SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---------------CHHHHHHHHHHHHHHh
Confidence 357999999999999999999977 5899999999999986
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.12 E-value=0.001 Score=64.82 Aligned_cols=270 Identities=14% Similarity=0.127 Sum_probs=183.4
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
++.++|..++..+|.+..+.+ .-..+.+.+.=-.++..|..+.. +..-+++|++.+..+..-....
T Consensus 37 ~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~-------------~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNK-------------NDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred CcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCC-------------ChHHHHHHHHHHHHHHHhcCCc
Confidence 456888999999988888654 77888888877778888887631 3445788999888776443322
Q ss_pred hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
+.+- . +.+..+|.+..+.+...+..|..+|..++..+ ..++...||+..|++.+-++ ..+..+..+.++..+
T Consensus 103 -~~~~--~-~vvralvaiae~~~D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~-~~~~~~~l~~~lL~l 174 (371)
T PF14664_consen 103 -KEIP--R-GVVRALVAIAEHEDDRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDG-SFSISESLLDTLLYL 174 (371)
T ss_pred -ccCC--H-HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhc-cHhHHHHHHHHHHHH
Confidence 2333 4 39999999999999999999999999998663 34555679999999999887 677889999999999
Q ss_pred CCCCcchHHHHhhCcHHHHHHHhhcc-----cchh--hhHHHHHHHHHHHcCChhhHHHHHhcC-CchHHHHHHHHhcCh
Q 014913 267 CPWGRNRIKGVEAGAVSILIDLLLDS-----SLER--RASEMILTVLDLLCQCAEGRAELLKHG-AGLAIVSKKILRVSQ 338 (416)
Q Consensus 267 s~~~~n~~~i~~~G~v~~Lv~lL~~~-----~~~~--~~~~~a~~~L~~La~~~~~~~~i~~~~-~~v~~Lv~~l~~~~~ 338 (416)
-.+++.|..+...=-+..++.-..+. ..+. +-...+..++..+-++=.|-..+..+. .++..||..|...++
T Consensus 175 Ld~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~ 254 (371)
T PF14664_consen 175 LDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNP 254 (371)
T ss_pred hCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCH
Confidence 99998887665533345555444332 1122 233344444444444333433333322 577777777665555
Q ss_pred hhhHHHHHHHHHHhcCC--------------------------------------------CC------hHHHHHHHhcC
Q 014913 339 VASERAVRILLSISKFS--------------------------------------------AT------NSVLQEMLQIG 368 (416)
Q Consensus 339 ~~~~~a~~~L~~L~~~~--------------------------------------------~~------~~~~~~i~~~G 368 (416)
+.++....++..+-.-. .+ .-+...++++|
T Consensus 255 ~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~g 334 (371)
T PF14664_consen 255 EIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAG 334 (371)
T ss_pred HHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcC
Confidence 66666666665532200 00 01122367889
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 369 VVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 369 ~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.++.|+++.....++....+|.-+|..+-.
T Consensus 335 L~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 335 LLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999999886678888999888876543
No 84
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.9e-06 Score=77.13 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=42.1
Q ss_pred CcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+-.||+|++.-..|.+. +|||.||+.||..-......++||.|++...
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 457899999999999987 7999999999998876544689999987664
No 85
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.10 E-value=0.00049 Score=67.91 Aligned_cols=220 Identities=14% Similarity=0.012 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
..++.++..|.. +++.+..++..+. ..+.+ .++..|+..|.+. ++.++..++
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~---------~~~~~L~~~L~d~---------------~~~vr~aaa 107 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL--AQEDA---------LDLRSVLAVLQAG---------------PEGLCAGIQ 107 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh---------HHHHHHHHHhcCC---------------CHHHHHHHH
Confidence 446667777742 3455544443332 11111 1367777777665 355777777
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
.+|..+- .. +..+.|+.+|++.++.++..++.++... . ....+.|..+|++. +.
T Consensus 108 ~ALg~i~------------~~-~a~~~L~~~L~~~~p~vR~aal~al~~r----------~--~~~~~~L~~~L~d~-d~ 161 (410)
T TIGR02270 108 AALGWLG------------GR-QAEPWLEPLLAASEPPGRAIGLAALGAH----------R--HDPGPALEAALTHE-DA 161 (410)
T ss_pred HHHhcCC------------ch-HHHHHHHHHhcCCChHHHHHHHHHHHhh----------c--cChHHHHHHHhcCC-CH
Confidence 7776331 13 2566677777777777776665555441 0 12345677777766 77
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHH---HhcC-------
Q 014913 254 QASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAEL---LKHG------- 323 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i---~~~~------- 323 (416)
.++..|+.+|..|- ...+++.|...+.+. ++.++..|+.+|..+-. ++....+ ....
T Consensus 162 ~Vra~A~raLG~l~----------~~~a~~~L~~al~d~--~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~ 228 (410)
T TIGR02270 162 LVRAAALRALGELP----------RRLSESTLRLYLRDS--DPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQR 228 (410)
T ss_pred HHHHHHHHHHHhhc----------cccchHHHHHHHcCC--CHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHH
Confidence 77777777776543 234555566666665 67777777777765532 2111111 1101
Q ss_pred -----------CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHH
Q 014913 324 -----------AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREV 392 (416)
Q Consensus 324 -----------~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~l 392 (416)
..++.|..++. ++.+++.++.+|..+ ....+++.|+..+. ++..++.|...
T Consensus 229 l~~~lal~~~~~a~~~L~~ll~--d~~vr~~a~~AlG~l-------------g~p~av~~L~~~l~---d~~~aR~A~eA 290 (410)
T TIGR02270 229 LLVLLAVAGGPDAQAWLRELLQ--AAATRREALRAVGLV-------------GDVEAAPWCLEAMR---EPPWARLAGEA 290 (410)
T ss_pred HHHHHHhCCchhHHHHHHHHhc--ChhhHHHHHHHHHHc-------------CCcchHHHHHHHhc---CcHHHHHHHHH
Confidence 11222222111 112333333333322 22468888988885 34488899988
Q ss_pred HHHHHH
Q 014913 393 LKLHAR 398 (416)
Q Consensus 393 l~~l~~ 398 (416)
++.+.-
T Consensus 291 ~~~ItG 296 (410)
T TIGR02270 291 FSLITG 296 (410)
T ss_pred HHHhhC
Confidence 887765
No 86
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.09 E-value=0.00019 Score=69.44 Aligned_cols=246 Identities=13% Similarity=0.082 Sum_probs=167.6
Q ss_pred hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-
Q 014913 129 NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR- 207 (416)
Q Consensus 129 ~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~- 207 (416)
..++|..-|++..|++++.+.+. ...++.+|.++|-.+... ++...++. - ++..++.+-+.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~-------------et~vRve~~rlLEq~~~a-eN~d~va~--~--~~~~Il~lAK~~ 233 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNL-------------ETSVRVEAARLLEQILVA-ENRDRVAR--I--GLGVILNLAKER 233 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCch-------------hHHHHHHHHHHHHHHHhh-hhhhHHhh--c--cchhhhhhhhhc
Confidence 56778888999999999998842 246788999999877644 33333333 2 45555555543
Q ss_pred CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC--cchHHHHhhCcHHHH
Q 014913 208 GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG--RNRIKGVEAGAVSIL 285 (416)
Q Consensus 208 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~--~n~~~i~~~G~v~~L 285 (416)
..++.+...+.+|.++-.+.+....-.++.|++..++--.+.. ++....+++-||.|.+.+. ..++.|++..+-+.|
T Consensus 234 e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWL 312 (832)
T KOG3678|consen 234 EPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWL 312 (832)
T ss_pred CcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhh
Confidence 4678888899999999877665555566779999888777777 8999999999999988755 488899998888989
Q ss_pred HHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc-----------------------------
Q 014913 286 IDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV----------------------------- 336 (416)
Q Consensus 286 v~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~----------------------------- 336 (416)
.-+-.+. |+-.+-+|+-+.+.|+...+--..+.. .|. -.||+-+...
T Consensus 313 F~LA~sk--Del~R~~AClAV~vlat~KE~E~~Vrk-S~T-laLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlL 388 (832)
T KOG3678|consen 313 FPLAFSK--DELLRLHACLAVAVLATNKEVEREVRK-SGT-LALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLL 388 (832)
T ss_pred hhhhcch--HHHHHHHHHHHHhhhhhhhhhhHHHhh-ccc-hhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhh
Confidence 9888887 888899999999999987765555444 332 2333332210
Q ss_pred -ChhhhHHHHHHHHHHhcCCC---ChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 337 -SQVASERAVRILLSISKFSA---TNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 337 -~~~~~~~a~~~L~~L~~~~~---~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+.+....++.+.+ +|.... ...-...+.+-|+|+.|-++..+. ++..-.-|...|..+.+.
T Consensus 389 dS~R~EAq~i~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 389 DSNRLEAQCIGAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE 453 (832)
T ss_pred hcchhhhhhhHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence 1111122232222 222110 000122345579999999999753 555566777888888774
No 87
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.09 E-value=0.0046 Score=59.48 Aligned_cols=244 Identities=12% Similarity=0.038 Sum_probs=171.4
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccc-----cCCccHHHHHHHhcCCHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGR-----NGTFVDSLTQIMQRGTYE 211 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-----~G~~i~~Lv~lL~~~~~~ 211 (416)
-.+.+++.+++... ..+....++..+..+-..+.....++... . ..-.+.+.+|..++.-
T Consensus 65 ~~v~~fi~LlS~~~--------------kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~-~~~~~fl~ll~r~d~~ 129 (442)
T KOG2759|consen 65 QYVKTFINLLSHID--------------KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKR-TEWLSFLNLLNRQDTF 129 (442)
T ss_pred HHHHHHHHHhchhh--------------hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhc-cchHHHHHHHhcCChH
Confidence 45778889988762 35667777777776665544333443321 1 2367889999999999
Q ss_pred HHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhc
Q 014913 212 SRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLD 291 (416)
Q Consensus 212 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~ 291 (416)
+.+.+.++|..++.....+.......=....|-..++++.+.....-|+++|..+...++.|..++.+.++..|+..+.+
T Consensus 130 iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s 209 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAS 209 (442)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhc
Confidence 99989999999986643332221221233445556666447788999999999999999999999999999999999954
Q ss_pred ccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCCCChHHH----HHHHh
Q 014913 292 SSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS-QVASERAVRILLSISKFSATNSVL----QEMLQ 366 (416)
Q Consensus 292 ~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~----~~i~~ 366 (416)
...+..++-..+-+++.|+.++...+.+.. .+.|+.|++.+.... .++.+.++.++.|+....++.+.+ ..|+.
T Consensus 210 ~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~ 288 (442)
T KOG2759|consen 210 TKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL 288 (442)
T ss_pred cCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh
Confidence 334788999999999999999888777755 789999999766543 478899999999999887644444 45666
Q ss_pred cChHHHHHHHHhcC-CcHHHHHHHHHHHHHH
Q 014913 367 IGVVAKLCLVLQVD-NSMKTKDKAREVLKLH 396 (416)
Q Consensus 367 ~G~v~~L~~ll~~~-~~~~~k~~A~~ll~~l 396 (416)
.++.+.+-.+.+.. .++...+--..+-..|
T Consensus 289 ~~v~k~l~~L~~rkysDEDL~~di~~L~e~L 319 (442)
T KOG2759|consen 289 CKVLKTLQSLEERKYSDEDLVDDIEFLTEKL 319 (442)
T ss_pred cCchHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 66666664444332 2344443333343333
No 88
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.08 E-value=3.3e-06 Score=62.06 Aligned_cols=39 Identities=36% Similarity=0.816 Sum_probs=31.6
Q ss_pred CcCccccCCC------------cee-cCCcCcccHHHHHHHHHcCCCCCCCCCC
Q 014913 12 CPISLAIMKD------------PVT-VPTGITYDRESIEKWLFAGKNNTCPMTK 52 (416)
Q Consensus 12 Cpic~~~~~~------------Pv~-l~cght~c~~ci~~~~~~~~~~~CP~~~ 52 (416)
|+||++.|.+ |+. .+|||.|-..||.+|+.. ..+||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 9999999944 333 489999999999999976 56999996
No 89
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.08 E-value=5.3e-05 Score=75.99 Aligned_cols=145 Identities=17% Similarity=0.096 Sum_probs=109.6
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
|...+..|+.++.+++.+-+..+.-... . +++.+||.+|..++..++..+..+|.|+.-...+-+......|+|..|.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~-~-dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKR-N-DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCcc-c-hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 4556666666776776654444333443 4 5899999999999999999999999999865554444455569999999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh-hC-cHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVE-AG-AVSILIDLLLDSSLERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G-~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~ 314 (416)
.++.+. +..++..+.|+|+++..+.++.....- .. .-..++.+..++ +..++|.+...|+||..+.+
T Consensus 468 s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 468 SMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhcCcH
Confidence 999998 999999999999999988875544322 11 223466666776 89999999999999987643
No 90
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.5e-06 Score=82.53 Aligned_cols=71 Identities=24% Similarity=0.420 Sum_probs=56.1
Q ss_pred CCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCC-----CCCchhHHHHHHHHHHh
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECE-----LTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~-----l~~n~~l~~~i~~~~~~ 77 (416)
..++.+|-|-||...+.+||+++|||+||..||.+.+.. ...||.|+..+. +.. ..+|+...+++..|+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~-e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ--ETECPLCRDELV-ELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc--CCCCcccccccc-cchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345889999999999999999999999999999997764 678999999886 321 12355556777766654
No 91
>PTZ00429 beta-adaptin; Provisional
Probab=98.05 E-value=0.0013 Score=69.57 Aligned_cols=214 Identities=9% Similarity=-0.008 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
++.+..+...|.+ +...+.+|++.+-.....+... .-+.+-+++++.+. +.++++-..
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~---------------d~elKKLvY 89 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPST---------------DLELKKLVY 89 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCC---------------CHHHHHHHH
Confidence 4567777788864 4567788887666655433211 23456677888776 578888888
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
-.|.+.+...++. .+. ++..+.+=|.++|+-+|..|.++|.++-.. .+. + -.++++.+.|.+. ++
T Consensus 90 LYL~~ya~~~pel--alL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~-e-~l~~~lkk~L~D~-~p 154 (746)
T PTZ00429 90 LYVLSTARLQPEK--ALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL-E-YTLEPLRRAVADP-DP 154 (746)
T ss_pred HHHHHHcccChHH--HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH-H-HHHHHHHHHhcCC-CH
Confidence 8888887644432 222 677888888899999999998888887432 122 2 3678888899888 99
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHH
Q 014913 254 QASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKI 333 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l 333 (416)
-+|+.|+.++..+-.... ..+.+.|.++.|.++|.+. ++.++.+|+.+|..+......+-.+.. ..+..|+..|
T Consensus 155 YVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l~~--~~~~~Ll~~L 228 (746)
T PTZ00429 155 YVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIESSN--EWVNRLVYHL 228 (746)
T ss_pred HHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHHHH--HHHHHHHHHh
Confidence 999999999999865443 2345678899999999887 999999999999999764323322222 3455666656
Q ss_pred HhcChhhhHHHHHHHHH
Q 014913 334 LRVSQVASERAVRILLS 350 (416)
Q Consensus 334 ~~~~~~~~~~a~~~L~~ 350 (416)
...+++.|-..+.+|..
T Consensus 229 ~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 229 PECNEWGQLYILELLAA 245 (746)
T ss_pred hcCChHHHHHHHHHHHh
Confidence 55577777766666644
No 92
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.0026 Score=67.27 Aligned_cols=247 Identities=16% Similarity=0.133 Sum_probs=165.8
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
+.+..+.-|+..+..+.... ..-..++..|.+..|+.+|-+. |..++.++.+|..|+++.+-.
T Consensus 1784 ~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~lLHS~----------------PS~R~~vL~vLYAL~S~~~i~ 1846 (2235)
T KOG1789|consen 1784 KHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTLLHSQ----------------PSMRARVLDVLYALSSNGQIG 1846 (2235)
T ss_pred CCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHHHhcC----------------hHHHHHHHHHHHHHhcCcHHH
Confidence 46678888888877666544 4777888999999999999876 889999999999999888766
Q ss_pred hhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccC--chhhHhh------------hhhHHHHHHHHhccCC
Q 014913 187 KSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAE--PMQLISL------------RQELFVEVIQVLHDHI 251 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~--~~~~~~~------------~~g~i~~Lv~lL~~~~ 251 (416)
++... .| ++--+.+++-. .+...|..|+..+..|..+.- .+..|.. ..|- ...|+++....
T Consensus 1847 keA~~--hg-~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~ 1922 (2235)
T KOG1789|consen 1847 KEALE--HG-GLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTS 1922 (2235)
T ss_pred HHHHh--cC-chhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccC
Confidence 66666 54 77777777754 578889999999999875421 2221110 0011 23333332110
Q ss_pred -ChHH------HH-------------------------------------------------------------------
Q 014913 252 -SQQA------SK------------------------------------------------------------------- 257 (416)
Q Consensus 252 -~~~~------~~------------------------------------------------------------------- 257 (416)
++++ +.
T Consensus 1923 EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~ 2002 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLT 2002 (2235)
T ss_pred CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHH
Confidence 1000 00
Q ss_pred ---------------------HHHHHHHHh-CCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh
Q 014913 258 ---------------------SALEVLVNI-CPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 258 ---------------------~A~~aL~nL-s~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~ 315 (416)
--..|+..| ..++.-...+-..|.+|.++..+.-. +..+-..|+.+|+.|+.+.-.
T Consensus 2003 ~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~--n~s~P~SaiRVlH~Lsen~~C 2080 (2235)
T KOG1789|consen 2003 ELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ--NTSAPRSAIRVLHELSENQFC 2080 (2235)
T ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc--CCcCcHHHHHHHHHHhhccHH
Confidence 000111111 12223334445567777777777655 455668899999999998877
Q ss_pred HHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc
Q 014913 316 RAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV 379 (416)
Q Consensus 316 ~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~ 379 (416)
..++.. ..++..+|..|++.-+ .-..|+.+|..+.....+ +....+.+.|.|+.|+.+|..
T Consensus 2081 ~~AMA~-l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~-eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2081 CDAMAQ-LPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTG-ELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHhc-cccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHH-HHHHHHhccCcHHHHHHHhcc
Confidence 777777 6777889987775433 334888899888876554 577788899999999999975
No 93
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.01 E-value=0.0017 Score=63.45 Aligned_cols=254 Identities=16% Similarity=0.137 Sum_probs=172.7
Q ss_pred HHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccC
Q 014913 116 LKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNG 195 (416)
Q Consensus 116 l~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G 195 (416)
+..|-.+.++.+..|..+.-.-..+.+..++=++ +.+++..+.++++.+..+.+..+.+.. .
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~---------------~~~vraa~yRilRy~i~d~~~l~~~~~--l- 65 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD---------------SKEVRAAGYRILRYLISDEESLQILLK--L- 65 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHHHcCHHHHHHHHH--c-
Confidence 3455566666666666666555566666544444 378999999999988888877666665 4
Q ss_pred CccHHHHHHHhcC--CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcch
Q 014913 196 TFVDSLTQIMQRG--TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNR 273 (416)
Q Consensus 196 ~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~ 273 (416)
+.--.++.-|... +..-|++|...+..+.....+...+ ..|.+..||.+..+. +...+..|+.+|..|+..+.
T Consensus 66 ~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P-- 140 (371)
T PF14664_consen 66 HIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP-- 140 (371)
T ss_pred CCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--
Confidence 2555666777653 5667899999999998764433332 348999999999988 88999999999999987543
Q ss_pred HHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc-------Ch--hhhHHH
Q 014913 274 IKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV-------SQ--VASERA 344 (416)
Q Consensus 274 ~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~-------~~--~~~~~a 344 (416)
..++++|++..|++.+.++ ..++.+..+.++..+-.++..|.-+..+ --+..++...... +. +--..+
T Consensus 141 ~lv~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s 217 (371)
T PF14664_consen 141 ELVAECGGIRVLLRALIDG--SFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQAS 217 (371)
T ss_pred HHHHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHH
Confidence 3567899999999999987 5568999999999999999999877663 3355555544332 11 112222
Q ss_pred HHHHHHHhcCCCChHHHHH-HHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 345 VRILLSISKFSATNSVLQE-MLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 345 ~~~L~~L~~~~~~~~~~~~-i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
..++..+-+.=.. +... +-+..++..|+..|+.+ +++.|+....++..+-+
T Consensus 218 ~~ai~~~LrsW~G--Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 218 AKAISTLLRSWPG--LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHhcCCc--eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHC
Confidence 3333322221111 0100 01125788899999875 77788877777666655
No 94
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.99 E-value=6.7e-05 Score=57.21 Aligned_cols=87 Identities=24% Similarity=0.294 Sum_probs=70.2
Q ss_pred cHHHHHHH-hcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHH
Q 014913 198 VDSLTQIM-QRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKG 276 (416)
Q Consensus 198 i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 276 (416)
|+.|++.| +++++.+|..++.+|..+- ...+++.|+.+++++ ++.++..|+.+|..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i---------- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDE-DPMVRRAAARALGRI---------- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCC----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHh----------
Confidence 57899999 7789999999999998331 225799999999888 999999999999986
Q ss_pred HhhCcHHHHHHHhhcccchhhhHHHHHHHHH
Q 014913 277 VEAGAVSILIDLLLDSSLERRASEMILTVLD 307 (416)
Q Consensus 277 ~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~ 307 (416)
....+++.|.+++.++. +..++..|+.+|.
T Consensus 59 ~~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 GDPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp HHHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 24558999999998863 4556788887774
No 95
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.92 E-value=0.0041 Score=59.84 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=157.9
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc--CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR--GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVE 242 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 242 (416)
+.....-|+++|..+...++-+-.++. . +++..++..|.+ .+-.++-+...+++-|+.+....+.+ ...+.|+.
T Consensus 170 ~~~~~~~~~rcLQ~ll~~~eyR~~~v~--a-dg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~-~~~~li~~ 245 (442)
T KOG2759|consen 170 NNDYIQFAARCLQTLLRVDEYRYAFVI--A-DGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL-KRFDLIQD 245 (442)
T ss_pred CCchHHHHHHHHHHHhcCcchhheeee--c-CcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH-hhccHHHH
Confidence 466778899999999988887767776 5 589999999943 47888889999999999886666555 55589999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhCCCCc-------chHHHHhhCcHHHHHHHhhccc-chhhhHH-------HHHHHHH
Q 014913 243 VIQVLHDHISQQASKSALEVLVNICPWGR-------NRIKGVEAGAVSILIDLLLDSS-LERRASE-------MILTVLD 307 (416)
Q Consensus 243 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-------n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~~-------~a~~~L~ 307 (416)
|++++++.....+.+-.+.++.|+....+ ...+|+..+ ++.-++.|.... +|+++.+ .--.-..
T Consensus 246 L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq 324 (442)
T KOG2759|consen 246 LSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQ 324 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999987667888999999999976552 345666665 455666665442 2344332 2222333
Q ss_pred HHcCChhhHHHHHh------------------------c-CCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCCCChHHH
Q 014913 308 LLCQCAEGRAELLK------------------------H-GAGLAIVSKKILRVS-QVASERAVRILLSISKFSATNSVL 361 (416)
Q Consensus 308 ~La~~~~~~~~i~~------------------------~-~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~ 361 (416)
.|+..++...++.. + -..+..|+++|...+ +..--.|+.=+....++.+. -+
T Consensus 325 ~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~--gk 402 (442)
T KOG2759|consen 325 DLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE--GK 402 (442)
T ss_pred hhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch--Hh
Confidence 44554444443322 1 134566777665543 45555666666667776653 67
Q ss_pred HHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 014913 362 QEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 362 ~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
..+.+-||=+.++.+|..+ ++++|..|-.++..|=
T Consensus 403 ~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 403 AVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 7788899999999999876 8999999988776553
No 96
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.00029 Score=64.85 Aligned_cols=187 Identities=20% Similarity=0.219 Sum_probs=129.1
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGV 277 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~ 277 (416)
+-.++.+|.+.++.++..|+..+..++.. ..+...-.+.-.++.|.++++.. .+ .+.|+.+|.|++....-++.+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 45688999999999999999999999866 33333333335788899999876 44 7889999999999999999988
Q ss_pred hhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh-cC----CchHHHHHHHHhcCh---hhhHHHHHHHH
Q 014913 278 EAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK-HG----AGLAIVSKKILRVSQ---VASERAVRILL 349 (416)
Q Consensus 278 ~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~-~~----~~v~~Lv~~l~~~~~---~~~~~a~~~L~ 349 (416)
.. .+..++..+.+. .....+.++.+|.||++.++....+.. .. .++..++......+- ..-.+-+.++.
T Consensus 81 ~~-~~k~l~~~~~~p--~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP--QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HH-HHHHHHHHhcCc--ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 88 888888888877 567889999999999998776555433 12 345555554443322 23566777888
Q ss_pred HHhcCCCChHHHHHHHhcC--hHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 014913 350 SISKFSATNSVLQEMLQIG--VVAKLCLVLQVDNSMKTKDKAREVLKL 395 (416)
Q Consensus 350 ~L~~~~~~~~~~~~i~~~G--~v~~L~~ll~~~~~~~~k~~A~~ll~~ 395 (416)
+|++.... |..+.... .+++|+.+- +..+..-|...+..|++
T Consensus 158 nls~~~~g---R~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN 201 (353)
T KOG2973|consen 158 NLSQFEAG---RKLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKN 201 (353)
T ss_pred HHhhhhhh---hhHhcchhhhhHhhhhccc-ccchhhhccchHHHHHh
Confidence 89887653 55544433 233333333 33344444555566665
No 97
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.91 E-value=7.3e-06 Score=80.40 Aligned_cols=71 Identities=25% Similarity=0.460 Sum_probs=54.5
Q ss_pred CCCCcccCcCccccCCCcee-cCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 5 DVPTFFLCPISLAIMKDPVT-VPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~-l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
.+.+++.||+|..++.||+. +.|||.||..|+..|... +..||.|...+.....+......++.+..|...
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQAEELPVPRALRRELLKLPIR 88 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence 36778999999999999998 499999999999999987 789999977776233333334556666655443
No 98
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.1e-05 Score=71.55 Aligned_cols=75 Identities=36% Similarity=0.624 Sum_probs=68.4
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
+.++|+.++|.|+.++|++||+.+.|-||.+.-|+..+..- ...-|+++.++. ..++.||..++..|..|...+.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rv-ghfdpvtr~~Lt-e~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRV-GHFDPVTRWPLT-EYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHh-ccCCchhcccCC-HHhhccchHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999998764 356899999998 8999999999999999998864
No 99
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=7.8e-06 Score=74.10 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=42.9
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhH
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTL 67 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l 67 (416)
|.|-||.++|.+||+++|||+||..|-.+-+.. ...|++|++... -.+.+...+
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~t~--g~~~~akeL 295 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK--GEKCYVCSQQTH--GSFNVAKEL 295 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc--CCcceecccccc--cccchHHHH
Confidence 689999999999999999999999997776654 478999988774 334344444
No 100
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.84 E-value=0.0001 Score=56.22 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=69.7
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHH
Q 014913 139 VEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVL 218 (416)
Q Consensus 139 i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~ 218 (416)
||.|++.|.++. ++.++..|+.+|.++- + . .+++.|+.+++++++.+|..|++
T Consensus 1 i~~L~~~l~~~~--------------~~~vr~~a~~~L~~~~--~----------~-~~~~~L~~~l~d~~~~vr~~a~~ 53 (88)
T PF13646_consen 1 IPALLQLLQNDP--------------DPQVRAEAARALGELG--D----------P-EAIPALIELLKDEDPMVRRAAAR 53 (88)
T ss_dssp HHHHHHHHHTSS--------------SHHHHHHHHHHHHCCT--H----------H-HHHHHHHHHHTSSSHHHHHHHHH
T ss_pred CHHHHHHHhcCC--------------CHHHHHHHHHHHHHcC--C----------H-hHHHHHHHHHcCCCHHHHHHHHH
Confidence 688999994441 6899999999998442 1 2 38889999999999999999999
Q ss_pred HHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHH
Q 014913 219 LLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLV 264 (416)
Q Consensus 219 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 264 (416)
+|..+- ...+++.|.+++.++.+..++..|+.+|.
T Consensus 54 aL~~i~-----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 54 ALGRIG-----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHCCH-----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHhC-----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 999872 23689999999988745666888988874
No 101
>PTZ00429 beta-adaptin; Provisional
Probab=97.83 E-value=0.0093 Score=63.28 Aligned_cols=209 Identities=12% Similarity=0.149 Sum_probs=141.2
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
++-++-.|++.|+.+-. ..++. . .+..+.+.|.+.++-+|..|+.++.++-..+. ..+...|.++.|.
T Consensus 118 Np~IRaLALRtLs~Ir~-----~~i~e--~--l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~ 185 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV-----SSVLE--Y--TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLV 185 (746)
T ss_pred CHHHHHHHHHHHHcCCc-----HHHHH--H--HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHH
Confidence 68899999999987753 23443 2 77788889999999999999999999965433 2334458899999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCC
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGA 324 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~ 324 (416)
.+|.+. ++.++.+|+.+|..+......... ...+.+..|+..|.+. ++-.+-..+.+|.... +...... ..
T Consensus 186 ~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~--~EW~Qi~IL~lL~~y~--P~~~~e~---~~ 256 (746)
T PTZ00429 186 ELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPEC--NEWGQLYILELLAAQR--PSDKESA---ET 256 (746)
T ss_pred HHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcC--ChHHHHHHHHHHHhcC--CCCcHHH---HH
Confidence 999988 999999999999999765443322 2345677777777665 5555555666664432 2222221 13
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+..+...|.+.++.+.-.|+.++.++..... +.....+.. -...+|+.+++ ++++.|..+..-+..+..
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-~~~~~~~~~-rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRCS-QELIERCTV-RVNTALLTLSR--RDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-HHHHHHHHH-HHHHHHHHhhC--CCccHHHHHHHHHHHHHH
Confidence 45566666667788889999999999886542 222222211 12356666653 367888888776666655
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.013 Score=54.73 Aligned_cols=271 Identities=11% Similarity=0.103 Sum_probs=175.4
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhh----hHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNK----RCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS 182 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~----~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~ 182 (416)
.+..++.-|++.+..+..+++.|. ..++++|..+.++..+..+ +-++-..|...|..++..
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge---------------ddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE---------------DDEVAKAAIESIKRIALF 158 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC---------------cHHHHHHHHHHHHHHHhc
Confidence 355777888999999998887554 2356889999999998876 467888899999999988
Q ss_pred hhhhhhhhccccCCccHHH--HHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHH
Q 014913 183 ELGLKSLVMGRNGTFVDSL--TQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSAL 260 (416)
Q Consensus 183 ~~~~~~~i~~~~G~~i~~L--v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 260 (416)
+.....+... .....+ +++--.-+.-+|......|..+.+.......-....|.+..|..-|+...+.-++.+++
T Consensus 159 paaleaiFeS---ellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 159 PAALEAIFES---ELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred HHHHHHhccc---ccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 8777666652 244433 33333345556666777777776554444444455688888888887633788899999
Q ss_pred HHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh----hHHHHHhc-CCchHHHHHHHHh
Q 014913 261 EVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE----GRAELLKH-GAGLAIVSKKILR 335 (416)
Q Consensus 261 ~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~----~~~~i~~~-~~~v~~Lv~~l~~ 335 (416)
...+.|+...-.+..+.+.|.|..+-.++.....++--+-.++.....+-.... .-+++.+. --.|....+.+..
T Consensus 236 ElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm 315 (524)
T KOG4413|consen 236 ELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM 315 (524)
T ss_pred HHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc
Confidence 999999998888999999999999999997663344444445444443322211 11122110 0123333444445
Q ss_pred cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcC--hHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHh
Q 014913 336 VSQVASERAVRILLSISKFSATNSVLQEMLQIG--VVAKLCLVLQVDNSMKT-KDKAREVLKLHARA 399 (416)
Q Consensus 336 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G--~v~~L~~ll~~~~~~~~-k~~A~~ll~~l~~~ 399 (416)
.++..++.|+.++..+.+.... .+.+.+.| ....|+.-.... +..+ ++.|...|..++..
T Consensus 316 nDpdaieaAiDalGilGSnteG---adlllkTgppaaehllarafdq-nahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 316 NDPDAIEAAIDALGILGSNTEG---ADLLLKTGPPAAEHLLARAFDQ-NAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred CCchHHHHHHHHHHhccCCcch---hHHHhccCChHHHHHHHHHhcc-cccchHHHHHHHHHHhhcc
Confidence 5778999999999999887654 45555554 344444433333 2333 33444466655553
No 103
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.74 E-value=0.00033 Score=67.80 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=125.9
Q ss_pred CccHHHHHHHhcCCHHH--HHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-c
Q 014913 196 TFVDSLTQIMQRGTYES--RAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-N 272 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~--~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n 272 (416)
|++..|+.+++.++.+. |..|+..|..+... +|...+... | +..++.+.+....++.....+..|.++-.+.+ .
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 49999999999987665 89999999998755 455554433 3 34444444543357888999999999988765 7
Q ss_pred hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC--hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHH
Q 014913 273 RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC--AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLS 350 (416)
Q Consensus 273 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~ 350 (416)
...+++.|++..++--.+.. ++.+..+++.+|.|++.+ .+.+..+++ ..+-.-|.-+-.+.++-.+-+|+-+...
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~skDel~R~~AClAV~v 333 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSKDELLRLHACLAVAV 333 (832)
T ss_pred HHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcchHHHHHHHHHHHHhh
Confidence 88999999999998888887 899999999999999874 556777777 4555555543344455678888888888
Q ss_pred HhcCCCChHHHHHHHhcChHHHHHHHH
Q 014913 351 ISKFSATNSVLQEMLQIGVVAKLCLVL 377 (416)
Q Consensus 351 L~~~~~~~~~~~~i~~~G~v~~L~~ll 377 (416)
|+... ++-.++.++|-+...--++
T Consensus 334 lat~K---E~E~~VrkS~TlaLVEPlv 357 (832)
T KOG3678|consen 334 LATNK---EVEREVRKSGTLALVEPLV 357 (832)
T ss_pred hhhhh---hhhHHHhhccchhhhhhhh
Confidence 87754 3566666666554433333
No 104
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.72 E-value=0.0005 Score=62.63 Aligned_cols=177 Identities=17% Similarity=0.111 Sum_probs=114.4
Q ss_pred CcHHHHHHHHHHHHHHhcC--hhhhhHHhhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCCh
Q 014913 108 SPQMQIKCLKKLRSIAAEN--ETNKRCLESA--GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISE 183 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~--~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~ 183 (416)
+-+.|.+|+..|+.++..+ ......+.+. ..+..++..+.+. ...+...|+.++..++..-
T Consensus 20 ~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~---------------Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 20 DWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL---------------RSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp SHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------------------HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh---------------HHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999877 3344444332 5666777777766 3678999999999888653
Q ss_pred hhh-hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhH-HHHHHHHhccCCChHHHHHHHH
Q 014913 184 LGL-KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQEL-FVEVIQVLHDHISQQASKSALE 261 (416)
Q Consensus 184 ~~~-~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~-i~~Lv~lL~~~~~~~~~~~A~~ 261 (416)
... ...+. ..++.|++.+.+++..+++.|..+|..+....... ... ++.+....++. ++.++..++.
T Consensus 85 ~~~~~~~~~----~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~ 153 (228)
T PF12348_consen 85 GSHFEPYAD----ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAE 153 (228)
T ss_dssp GGGGHHHHH----HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHH
T ss_pred hHhHHHHHH----HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 322 23332 38899999999999999999999999998653311 123 56667777888 9999999999
Q ss_pred HHHHhCCCCc-chHHHHh----hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 262 VLVNICPWGR-NRIKGVE----AGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 262 aL~nLs~~~~-n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
.|..+..... +...+-. ...++.+...+.+. ++++++.|-.++..+...
T Consensus 154 ~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 154 WLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence 9998754333 2222222 34778888888888 899999999999999654
No 105
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.00084 Score=66.14 Aligned_cols=199 Identities=14% Similarity=0.070 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhh
Q 014913 111 MQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLV 190 (416)
Q Consensus 111 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i 190 (416)
.-..++..|..+++.-...|.-+.+..++++|+++|+.+ +..+.--+...++|+...-++.+..+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P---------------eimi~~~~t~~icn~vv~fsnL~~~f 469 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP---------------EIMIEFPDTIDICNKVVPFSNLGAGF 469 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc---------------cceeeccchhhhhheeeeccchHHHH
Confidence 334556677777776666788899999999999999876 35556667788888877666665555
Q ss_pred ccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhH-hhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC
Q 014913 191 MGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLI-SLRQELFVEVIQVLHDHISQQASKSALEVLVNICPW 269 (416)
Q Consensus 191 ~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 269 (416)
.+ . +.|..|++++.+.+...|.+..|.|..+..++++..+. ....-++..++.+..++ ...+++.....|+|+.-+
T Consensus 470 L~-~-~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~ 546 (743)
T COG5369 470 LE-K-SIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCD 546 (743)
T ss_pred HH-h-hHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccc
Confidence 53 5 49999999999999999999999999999887765332 12224678888988888 899999999999998542
Q ss_pred C-c---chHHHHhhC----cHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHH-HhcCCchHHH
Q 014913 270 G-R---NRIKGVEAG----AVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAEL-LKHGAGLAIV 329 (416)
Q Consensus 270 ~-~---n~~~i~~~G----~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i-~~~~~~v~~L 329 (416)
. . .+..+.+.- ....|++.+... ++-..+..+-+|.+++.++++...+ .+....+..+
T Consensus 547 ~~knEkskdv~~K~~p~~ylfk~l~~k~e~~--np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i 613 (743)
T COG5369 547 TSKNEKSKDVFIKATPRRYLFKRLIDKYEEN--NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSI 613 (743)
T ss_pred cccccccceeEEecChHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHH
Confidence 2 2 233222221 445677777766 5555556677888777766664443 3333333333
No 106
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.65 E-value=0.012 Score=58.28 Aligned_cols=196 Identities=16% Similarity=0.033 Sum_probs=132.2
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
.+++.++..|.... ++++...++.+|. ... .. .++..|+..|...+..++..+
T Consensus 54 ~a~~~L~~aL~~d~--------------~~ev~~~aa~al~--~~~----------~~-~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 54 AATELLVSALAEAD--------------EPGRVACAALALL--AQE----------DA-LDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred hHHHHHHHHHhhCC--------------ChhHHHHHHHHHh--ccC----------Ch-HHHHHHHHHhcCCCHHHHHHH
Confidence 45888999996542 4666665555553 211 12 257889999999999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchh
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLER 296 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~ 296 (416)
+.+|..+- ..+..+.|+.+|++. ++.++..++.++.. ......++|+.+|.+. +.
T Consensus 107 a~ALg~i~-----------~~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~--d~ 161 (410)
T TIGR02270 107 QAALGWLG-----------GRQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------HRHDPGPALEAALTHE--DA 161 (410)
T ss_pred HHHHhcCC-----------chHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC--CH
Confidence 99997542 236778999999988 89999888877776 2233568899999887 89
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcC------------CCChH--HHH
Q 014913 297 RASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKF------------SATNS--VLQ 362 (416)
Q Consensus 297 ~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~------------~~~~~--~~~ 362 (416)
.++..|+.+|..|-. ...++.|...+.+.++.++..|+.+|..+... .+... ...
T Consensus 162 ~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~ 230 (410)
T TIGR02270 162 LVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLL 230 (410)
T ss_pred HHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHH
Confidence 999999999988753 34556666666666778888888777655321 00000 001
Q ss_pred HHHhc----ChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 363 EMLQI----GVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 363 ~i~~~----G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+... .+++.|..+++. +.+++.+...|..+..
T Consensus 231 ~~lal~~~~~a~~~L~~ll~d---~~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 231 VLLAVAGGPDAQAWLRELLQA---AATRREALRAVGLVGD 267 (410)
T ss_pred HHHHhCCchhHHHHHHHHhcC---hhhHHHHHHHHHHcCC
Confidence 11111 356667777754 3478888777776544
No 107
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.07 Score=51.84 Aligned_cols=243 Identities=17% Similarity=0.168 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCCh------h---h
Q 014913 115 CLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISE------L---G 185 (416)
Q Consensus 115 Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~------~---~ 185 (416)
.+..+.-++. -|.....+++.++|+.|+.+|... +.++.-..+..|..|+-.+ + .
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHe---------------NtDI~iavvdLLqELTD~Dv~~es~egAev 167 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHE---------------NTDIAIAVVDLLQELTDEDVLYESEEGAEV 167 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCC---------------CchhHHHHHHHHHHhhhhcccccccccHHH
Confidence 4455555544 456888899999999999999988 4677788888888887422 1 1
Q ss_pred h-hhhhccccCCccHHHHHHHhcCCH------HHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC-CChHHHH
Q 014913 186 L-KSLVMGRNGTFVDSLTQIMQRGTY------ESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH-ISQQASK 257 (416)
Q Consensus 186 ~-~~~i~~~~G~~i~~Lv~lL~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~ 257 (416)
. ..++. . +.++.||.-+..=+. ....+....+.|+......-...+.+.|.+.-|..-+... .-..-+.
T Consensus 168 LidaLvd--g-~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~ 244 (536)
T KOG2734|consen 168 LIDALVD--G-QVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQ 244 (536)
T ss_pred HHHHHHh--c-cHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHH
Confidence 1 12333 4 488888887765332 3345567777888766555555556667777766644322 1234556
Q ss_pred HHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhc----cc---chhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHH
Q 014913 258 SALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLD----SS---LERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIV 329 (416)
Q Consensus 258 ~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~----~~---~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~L 329 (416)
-|...|.-+-.+. +|+..+....+|..|++-|.- ++ ...+.-++....|+.+...+++|..+.. +.|++ |
T Consensus 245 YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlq-L 322 (536)
T KOG2734|consen 245 YASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQ-L 322 (536)
T ss_pred HHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHH-H
Confidence 6777777665544 599999999999999988852 11 2456778888889999899999999998 56664 5
Q ss_pred HHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHh
Q 014913 330 SKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQ 378 (416)
Q Consensus 330 v~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~ 378 (416)
+.+|.+.....+..++.+|-....+..........++.+|+..+..+.-
T Consensus 323 m~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 323 MNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 5567766667888999999998887765457788888888888877653
No 108
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.60 E-value=0.00011 Score=47.06 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=36.0
Q ss_pred CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 270 GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 270 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
++++..+++.|++++|+++|.+. +.++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~--~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE--DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcC
Confidence 34788899999999999999977 89999999999999973
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.60 E-value=0.00015 Score=69.18 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=45.1
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCC
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTP 63 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~ 63 (416)
+.|.|++++-++||+. .+||.|+|+-|++++.+ +..||+++++++ .+++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e--~G~DPIt~~pLs-~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE--TGKDPITNEPLS-IEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH--cCCCCCCCCcCC-HHHeee
Confidence 4799999999999987 79999999999999998 568999999998 665554
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.58 E-value=0.0016 Score=59.20 Aligned_cols=188 Identities=18% Similarity=0.176 Sum_probs=112.6
Q ss_pred hcCCHHHHHHHHHHHHHhhccc---CchhhHhhh-hhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCc
Q 014913 206 QRGTYESRAYAVLLLKSMLEVA---EPMQLISLR-QELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGA 281 (416)
Q Consensus 206 ~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~ 281 (416)
.+.+.+.|..|..-|..+...+ +....+... ...+..++..+.+. ...+.+.|+.+|..|+..-.....-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4578999999999999998765 111211111 12345677777776 678889999999999865543332223448
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCC--ChH
Q 014913 282 VSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSA--TNS 359 (416)
Q Consensus 282 v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~--~~~ 359 (416)
+|.|++.+.+. ...+++.|..+|..+...-..-..+. ++.+...+.+.++..+..++..|..+....+ ...
T Consensus 96 l~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS--KKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc--cHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999887 67899999999999988643111111 2234444445577899999998888776554 111
Q ss_pred HHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccC
Q 014913 360 VLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKN 402 (416)
Q Consensus 360 ~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~ 402 (416)
......-...++.+...+.. .++++|+.|..++..+.++|..
T Consensus 169 l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCH
Confidence 11111112466677777754 6999999999999999998753
No 111
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.58 E-value=2.3e-05 Score=66.64 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=40.0
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
|.|-||.+-++.||++.|||.||..|..+-... ...|-+|++...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK--GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc--CCcceecchhhc
Confidence 899999999999999999999999998877655 468999988764
No 112
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0041 Score=62.90 Aligned_cols=280 Identities=14% Similarity=0.097 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcChhhhhHHh--h--cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchH
Q 014913 95 KAQITKLLNEAAKSP-QMQIKCLKKLRSIAAENETNKRCLE--S--AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPV 169 (416)
Q Consensus 95 ~~~i~~lv~~l~~~~-~~~~~Al~~L~~l~~~~~~~~~~i~--~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 169 (416)
++.++.|...|.+.+ ..+.-|.++|.+++.++.+.-+.-. + .-.||.++++.++. ++.++
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~---------------spkiR 191 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP---------------SPKIR 191 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC---------------ChhHH
Confidence 467888888885433 6777899999999998765332211 1 14688889998887 59999
Q ss_pred HHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc
Q 014913 170 DEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD 249 (416)
Q Consensus 170 ~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 249 (416)
..|+.++-..-.... ..+..... ..+..+-.+-...++++|.+.|.++..|...... +.+-.-.+.|..++..-++
T Consensus 192 s~A~~cvNq~i~~~~--qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd 267 (885)
T KOG2023|consen 192 SHAVGCVNQFIIIQT--QALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQD 267 (885)
T ss_pred HHHHhhhhheeecCc--HHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccC
Confidence 999998865443322 12222112 3666666666778999999999999999865322 2233334677777777777
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHh--hCcHHHHHHHhhcccc---------h-----------------------
Q 014913 250 HISQQASKSALEVLVNICPWGRNRIKGVE--AGAVSILIDLLLDSSL---------E----------------------- 295 (416)
Q Consensus 250 ~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--~G~v~~Lv~lL~~~~~---------~----------------------- 295 (416)
. +.++.-.|+.-+..++..+--+..+.. ...||.|+.-+.-... +
T Consensus 268 ~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~ 346 (885)
T KOG2023|consen 268 V-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGN 346 (885)
T ss_pred c-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccC
Confidence 7 888888999999999988854444433 3466666654321100 0
Q ss_pred ----------------------hhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 296 ----------------------RRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 296 ----------------------~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
=.++...+++|..|+.-- +.++.. -.+|.|=+.|.+..-.++|.++-+|..++.
T Consensus 347 ~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf--~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAE 422 (885)
T KOG2023|consen 347 GEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVF--GDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAE 422 (885)
T ss_pred ccccccccccccccccccccccccHhhccHHHHHHHHHhh--HHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHH
Confidence 024455556666665421 112222 223444444444445789999999999997
Q ss_pred CCCChHHHHHHHh--cChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 354 FSATNSVLQEMLQ--IGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 354 ~~~~~~~~~~i~~--~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
+. .+-++. .-.+|.|+.+|.+. .+-+|..+.+.|..-+.+.-+.|
T Consensus 423 Gc-----M~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~ 469 (885)
T KOG2023|consen 423 GC-----MQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS 469 (885)
T ss_pred HH-----hhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC
Confidence 64 333333 23678888888664 77788888888887766543333
No 113
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.56 E-value=0.011 Score=59.40 Aligned_cols=235 Identities=16% Similarity=0.089 Sum_probs=155.7
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC-hhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS-ELGL 186 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~-~~~~ 186 (416)
++....+|+++|.|+.-.++..|..+.+.|..+.++..|+..... ..+.++.-...++|.-++.. .+..
T Consensus 45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~----------~~~~d~~Fl~~RLLFLlTa~~~~~~ 114 (446)
T PF10165_consen 45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDS----------SQPSDVEFLDSRLLFLLTALRPDDR 114 (446)
T ss_pred ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHccccc----------CCChhHHHHHHHHHHHHhcCChhHH
Confidence 468899999999999999999999999999999999999876210 01356777788888876654 3444
Q ss_pred hhhhccccCCccHHHHHHHhc-----------------CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc
Q 014913 187 KSLVMGRNGTFVDSLTQIMQR-----------------GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD 249 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 249 (416)
+.++. +. +++..++..|.. .+.+....+..+++|+..+...... -...+.++.|+.++..
T Consensus 115 ~~L~~-e~-~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~ 191 (446)
T PF10165_consen 115 KKLIE-EH-HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRR 191 (446)
T ss_pred HHHHH-Hh-hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHH
Confidence 56665 45 388888887742 1334456678888898765443322 1233566666666431
Q ss_pred --------CCChHHHHHHHHHHHHhCCCCc-c-------h----HHHHhhCcHHHHHHHhhcc----c--chhhhHHHHH
Q 014913 250 --------HISQQASKSALEVLVNICPWGR-N-------R----IKGVEAGAVSILIDLLLDS----S--LERRASEMIL 303 (416)
Q Consensus 250 --------~~~~~~~~~A~~aL~nLs~~~~-n-------~----~~i~~~G~v~~Lv~lL~~~----~--~~~~~~~~a~ 303 (416)
........+++.+|.|+-.... . . .......+|..|+.+|... . .-.+.....+
T Consensus 192 ~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL 271 (446)
T PF10165_consen 192 LLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLL 271 (446)
T ss_pred HhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHH
Confidence 1134677888899998832110 0 1 1123345778888888632 0 0124566778
Q ss_pred HHHHHHcCChh-hHHHHHh---------------cCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCC
Q 014913 304 TVLDLLCQCAE-GRAELLK---------------HGAGLAIVSKKILRVSQVASERAVRILLSISKFS 355 (416)
Q Consensus 304 ~~L~~La~~~~-~~~~i~~---------------~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~ 355 (416)
.+|.+++...+ .|..+.. ....-..|+++|.+.....+..+...|+.||..+
T Consensus 272 ~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 272 TLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 88888888644 4444433 1234467888777666789999999999999765
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.52 E-value=0.012 Score=59.16 Aligned_cols=273 Identities=13% Similarity=0.112 Sum_probs=172.9
Q ss_pred HHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhcccc
Q 014913 115 CLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRN 194 (416)
Q Consensus 115 Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~ 194 (416)
++.+|+.+.++.. +.+.+....++..|.+.-.=...+ +... ...+..+..+|+++|+|+.......+....+ .
T Consensus 1 ~L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~---~~~~--~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~ 73 (446)
T PF10165_consen 1 CLETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESD---EDEF--ESPDPDVSREALKCLCNALFLSPSARQIFVD-L 73 (446)
T ss_pred CHHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccc---cccc--cCCChHHHHHHHHHHHHHHhCCHHHHHHHHH-c
Confidence 3566777777644 677777666677777664111000 0000 1125789999999999999887776676664 5
Q ss_pred CCccHHHHHHHhcC-----CHHHHHHHHHHHHHhhcc-cCchhhHhhhhhHHHHHHHHhcc-------C---------CC
Q 014913 195 GTFVDSLTQIMQRG-----TYESRAYAVLLLKSMLEV-AEPMQLISLRQELFVEVIQVLHD-------H---------IS 252 (416)
Q Consensus 195 G~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~-------~---------~~ 252 (416)
| ..+.+++.|+.. +.++.-....+|+-++.. .+....+..+.+++..|+..|.. . .+
T Consensus 74 ~-~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 152 (446)
T PF10165_consen 74 G-LAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMD 152 (446)
T ss_pred C-cHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcch
Confidence 4 899999999986 788888888998888754 34455556666788887776631 0 13
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc---c----chhhhHHHHHHHHHHHcCC-hhh-------HH
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS---S----LERRASEMILTVLDLLCQC-AEG-------RA 317 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~---~----~~~~~~~~a~~~L~~La~~-~~~-------~~ 317 (416)
......++..|+|+..+......-...+.++.|+.+|..- . ........++.+|.|+-.. ... ..
T Consensus 153 ~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~ 232 (446)
T PF10165_consen 153 EEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQS 232 (446)
T ss_pred HHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcc
Confidence 3455677899999976554333223355677777776422 1 1234566777888877321 111 00
Q ss_pred H---HHhcCCchHHHHHHHHhc----C----hhhhHHHHHHHHHHhcCCCChHHHHHHHh----------------cChH
Q 014913 318 E---LLKHGAGLAIVSKKILRV----S----QVASERAVRILLSISKFSATNSVLQEMLQ----------------IGVV 370 (416)
Q Consensus 318 ~---i~~~~~~v~~Lv~~l~~~----~----~~~~~~a~~~L~~L~~~~~~~~~~~~i~~----------------~G~v 370 (416)
. -......+..|+++|.+. . ...-...+.+|..++..+. .+|..+.. ...-
T Consensus 233 ~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~--~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~ 310 (446)
T PF10165_consen 233 SLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR--EVRKYLRARLLPPDKDRKKPPEKGDTLR 310 (446)
T ss_pred cccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH--HHHHHHHHHhCCChhhcccCCCCCcchH
Confidence 0 012234566777765432 1 1345566778888888764 35655544 2567
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 371 AKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 371 ~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+|+.++.+. .+..|..++.+|-.|.+
T Consensus 311 ~rLlrLmt~~-~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 311 SRLLRLMTSP-DPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHHHhCCC-CchHHHHHHHHHHHHHh
Confidence 7899999775 48999999999877765
No 115
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=4.2e-05 Score=69.64 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=40.9
Q ss_pred cCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|+||..-+.-||.+.|+|.||.-||+--...+ ..+||+|+.++.
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd-k~~CavCR~pid 53 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKND-KKTCAVCRFPID 53 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcC-CCCCceecCCCC
Confidence 599999999999999999999999998876654 788999999996
No 116
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.51 E-value=0.00012 Score=54.49 Aligned_cols=46 Identities=26% Similarity=0.464 Sum_probs=35.9
Q ss_pred cCcCccccCCC-ceec-CCcCcccHHHHHHHHHcC-CCCCCCCCCcccc
Q 014913 11 LCPISLAIMKD-PVTV-PTGITYDRESIEKWLFAG-KNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~-Pv~l-~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~ 56 (416)
.||.|+..-.| |++. .|+|.|=..||.+|+++. .+..||.|+++..
T Consensus 34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 45666655445 7666 899999999999999863 3679999998875
No 117
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00014 Score=76.71 Aligned_cols=73 Identities=36% Similarity=0.634 Sum_probs=67.2
Q ss_pred CCCCCcccCcCccccCCCceecC-CcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVP-TGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~-cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
.++|++|.-|+...+|+|||++| .|++.||+-|++.+-. ..+-|.|+++++ .+.+.||..++.-|+.|..++.
T Consensus 865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs--~~tdPFNR~pLt-~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS--DCTDPFNREPLT-EDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc--CCCCccccccCc-hhhcCCCHHHHHHHHHHHHHhh
Confidence 35899999999999999999997 9999999999999876 578899999999 9999999999999999988754
No 118
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.41 E-value=0.00024 Score=45.50 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=34.7
Q ss_pred hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcC
Q 014913 128 TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLK 180 (416)
Q Consensus 128 ~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~ 180 (416)
+++..+.+.|+|+.|+.+|.++ +.++++.|+++|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~---------------~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSE---------------DEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCC---------------CHHHHHHHHHHHHHHc
Confidence 4889999999999999999966 5899999999999987
No 119
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00012 Score=67.41 Aligned_cols=49 Identities=22% Similarity=0.444 Sum_probs=42.4
Q ss_pred CCCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|+.-.||||..--.+|.++ -+|++||+.||-++..+ ..+||+|+.+..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcch
Confidence 45667999999999999877 56999999999999986 679999987664
No 120
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.40 E-value=0.029 Score=54.24 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=112.3
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
..+..+++.+.+ ++..|..|...+..+... -++|.|..+|.+. ++.++..|+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~---------------~~~vr~~a~~ 96 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDE---------------DPRVRDAAAD 96 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCC---------------CHHHHHHHHH
Confidence 456677777754 467777777775554332 3489999999987 5789999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ-RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
+|..+- + . ..++.|+.+|. +++..+|..++++|..+-.. .++.+|+.++.+. ..
T Consensus 97 aLg~~~--~----------~-~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~-~~ 151 (335)
T COG1413 97 ALGELG--D----------P-EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDE-DS 151 (335)
T ss_pred HHHccC--C----------h-hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccc-hh
Confidence 776542 1 3 38889999999 58999999999999888432 3478888888876 42
Q ss_pred H------------HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh
Q 014913 254 Q------------ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 254 ~------------~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~ 313 (416)
. .+..++.+|.. +...-.++.|...+... +..++..|+.+|..+....
T Consensus 152 ~~a~~~~~~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~~--~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 152 GSAAAALDAALLDVRAAAAEALGE----------LGDPEAIPLLIELLEDE--DADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhhhhccchHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhCc--hHHHHHHHHHHHHHhhcch
Confidence 2 23333333332 33445788999999988 7789999999999997764
No 121
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.40 E-value=7.2e-05 Score=72.77 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=42.8
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHc---CCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA---GKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~---~~~~~CP~~~~~l~ 56 (416)
.+..|-+|.++-.||+..+|.|+||+-||..|... +.+.+||.|...++
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 45789999999999999999999999999988764 23689999988886
No 122
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.37 E-value=0.0051 Score=51.94 Aligned_cols=122 Identities=10% Similarity=0.138 Sum_probs=99.5
Q ss_pred hhhHHHHHHHHhccCCC-----hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc
Q 014913 236 RQELFVEVIQVLHDHIS-----QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 236 ~~g~i~~Lv~lL~~~~~-----~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La 310 (416)
..||+..|++++.++.. .+....++.+...|-.++-.-....+.-.|..++..+.....+..+...|+++|.++.
T Consensus 9 ~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~V 88 (160)
T PF11841_consen 9 SRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIV 88 (160)
T ss_pred hccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHH
Confidence 34789999999998832 3667778888888888776444566667888888888866446889999999999999
Q ss_pred CChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCC
Q 014913 311 QCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 311 ~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
.+.......+..+=-++.|+.+|...+...+.+++..+..|-...++
T Consensus 89 l~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 89 LNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred hCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 98777666666678899999999988889999999999998877765
No 123
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=8e-05 Score=76.62 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=41.3
Q ss_pred cccCcCccccCCC-----ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKD-----PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~-----Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+-.|+||.+.|.. |-.++|||.|+..|+.+|++. ..+||.|+..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLY 341 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhh
Confidence 5789999999999 778999999999999999997 689999988443
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.35 E-value=0.00046 Score=47.61 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 210 YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 210 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
+.+|..|+++|.+++........- ....+++.|+.+|+++ +..++.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 468999999999987654433333 3347999999999988 889999999999875
No 125
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00014 Score=67.83 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=40.7
Q ss_pred CCcccCcCccccCCCc-------------eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDP-------------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~P-------------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++..|-||++-|..| =-++|||-+=-.|+..|++. ..+||.|+.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCccc
Confidence 4678999999885543 47899999999999999987 689999998853
No 126
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00017 Score=63.71 Aligned_cols=53 Identities=19% Similarity=0.480 Sum_probs=44.5
Q ss_pred CcccCcCccccCCCce---ec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCC
Q 014913 8 TFFLCPISLAIMKDPV---TV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTP 63 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv---~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~ 63 (416)
..|.||+|.+.+.+.+ .| +|||+||..|.++++.. ...||+|++++. +.+++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~plk-drdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPLK-DRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--cccccCCCCcCc-ccceEe
Confidence 5689999999999865 34 99999999999998865 689999999998 555543
No 127
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.29 E-value=0.0099 Score=63.10 Aligned_cols=196 Identities=17% Similarity=0.084 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 96 AQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 96 ~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
+++|-.++.| -+..-|..|+.-|.+..--.+=.-..-..-|+.|-.+++|++.. .+++---+-+
T Consensus 472 eQLPiVLQVL-LSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a---------------~ELrpiLVFI 535 (1387)
T KOG1517|consen 472 EQLPIVLQVL-LSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA---------------RELRPILVFI 535 (1387)
T ss_pred HhcchHHHHH-HHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch---------------HhhhhhHHHH
Confidence 4444455555 22233455666666655444423333345699999999999882 4443322211
Q ss_pred HH-hcCCChhhhhhhhccccCCccHHHHHHHhc-C--CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 176 LC-NLKISELGLKSLVMGRNGTFVDSLTQIMQR-G--TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 176 L~-~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
=. -|+.+++....++.+ . +-.-.+..|.. + +++-|..||.+|..++.+..-.+....+.+.|..=...|.++.
T Consensus 536 WAKILAvD~SCQ~dLvKe-~--g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~ 612 (1387)
T KOG1517|consen 536 WAKILAVDPSCQADLVKE-N--GYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP 612 (1387)
T ss_pred HHHHHhcCchhHHHHHhc-c--CceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc
Confidence 11 367777777788884 2 55555666655 2 5788999999999999775544555556567776666676642
Q ss_pred ChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 252 SQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
.+-.++-.+-+|..|-.+. ++|..=++.++...|+.+|.+. -++++..|+-+|..+..+
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcc
Confidence 5788899999999996655 5888888899999999999987 789999999999988774
No 128
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.28 E-value=9.6e-05 Score=70.23 Aligned_cols=36 Identities=14% Similarity=0.364 Sum_probs=32.2
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~ 42 (416)
.++++||||..+|+||++++|||+.|+.|-...+..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 578999999999999999999999999998765543
No 129
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.0097 Score=58.93 Aligned_cols=185 Identities=10% Similarity=0.024 Sum_probs=131.4
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
.|..++.+-.-.+.-+.+ . ...++|+++|+.++..+.--+...+.|+.....+-.......|.|..|+.++.+. +..
T Consensus 412 ~LkS~SrSV~~LRTgL~d-~-~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-Dda 488 (743)
T COG5369 412 FLKSMSRSVTFLRTGLLD-Y-PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-DDA 488 (743)
T ss_pred HHHHhhHHHHHHHhhccc-c-chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-hhh
Confidence 344444444434444443 4 4899999999987777777788889998876677777777779999999999988 889
Q ss_pred HHHHHHHHHHHhCCCCcc--hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh---HHHH-Hh---cCCc
Q 014913 255 ASKSALEVLVNICPWGRN--RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG---RAEL-LK---HGAG 325 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~n--~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~---~~~i-~~---~~~~ 325 (416)
++++..|.|+.|..+.++ +-.+...-++..++.+..++ +-.+++.++-+|+|+..+..- -..+ .. ..-.
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 999999999999887763 44555666789999999888 789999999999999763221 1111 10 0112
Q ss_pred hHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHh
Q 014913 326 LAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQ 366 (416)
Q Consensus 326 v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 366 (416)
...|++.+...++-..+..+.+|.+++..+++ .+..+.+
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~--l~~~V~~ 605 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDT--LDYIVQS 605 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccch--HHHHHHh
Confidence 33455555556676666668888888888775 4555444
No 130
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.17 E-value=0.027 Score=54.39 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=123.4
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
-.++.+++.+.+. +..++..|+..|..+. . . .+++.+..+|...+..+|..|
T Consensus 43 ~~~~~~~~~l~~~---------------~~~vr~~aa~~l~~~~-----------~-~-~av~~l~~~l~d~~~~vr~~a 94 (335)
T COG1413 43 EAADELLKLLEDE---------------DLLVRLSAAVALGELG-----------S-E-EAVPLLRELLSDEDPRVRDAA 94 (335)
T ss_pred hhHHHHHHHHcCC---------------CHHHHHHHHHHHhhhc-----------h-H-HHHHHHHHHhcCCCHHHHHHH
Confidence 4688889998877 4778888888855332 1 2 388899999999999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc-CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccch
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD-HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLE 295 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~ 295 (416)
+.+|..+- ....+++|+.+|+. + +..++..|+++|..+-. ..++.+|+.++... .
T Consensus 95 ~~aLg~~~-----------~~~a~~~li~~l~~d~-~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~--~ 150 (335)
T COG1413 95 ADALGELG-----------DPEAVPPLVELLENDE-NEGVRAAAARALGKLGD----------ERALDPLLEALQDE--D 150 (335)
T ss_pred HHHHHccC-----------ChhHHHHHHHHHHcCC-cHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccc--h
Confidence 99776652 12478999999994 6 89999999999997543 23488888888775 3
Q ss_pred hh------------hHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHH
Q 014913 296 RR------------ASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQE 363 (416)
Q Consensus 296 ~~------------~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 363 (416)
.. ++..+...|.. ..+...++.+.+.+......++..|+.+|..+....
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~-----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------- 211 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGE-----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------- 211 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHH-----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------
Confidence 22 12222222222 223566778888777667788999998888887753
Q ss_pred HHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 364 MLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 364 i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
..+.+.+...++. .+...|.++...|.
T Consensus 212 ---~~~~~~l~~~~~~-~~~~vr~~~~~~l~ 238 (335)
T COG1413 212 ---VEAADLLVKALSD-ESLEVRKAALLALG 238 (335)
T ss_pred ---hhHHHHHHHHhcC-CCHHHHHHHHHHhc
Confidence 1233444444433 24555555554444
No 131
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0088 Score=63.46 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhC-CCCcchHHHHh----hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHH
Q 014913 254 QASKSALEVLVNIC-PWGRNRIKGVE----AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAI 328 (416)
Q Consensus 254 ~~~~~A~~aL~nLs-~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~ 328 (416)
+-.+-++.||.||- .+++-...+.. -|-++.+..+|.... ++.++..|+.++..++...+.-..++. .+.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~-~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRK-HPKLQILALQVILLATANKECVTDLAT-CNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcC-CchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHH
Confidence 35567899999985 46654333322 477888888888764 788999999999999998888888888 477777
Q ss_pred HHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014913 329 VSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPCVPE 408 (416)
Q Consensus 329 Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~ 408 (416)
|+. |++.-+..++.+..+|+.|++.. ++..+..+.|++..++.++-...++..|..|+.++..+-.--..+|=|.-
T Consensus 1818 LL~-lLHS~PS~R~~vL~vLYAL~S~~---~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~I 1893 (2235)
T KOG1789|consen 1818 LLT-LLHSQPSMRARVLDVLYALSSNG---QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTI 1893 (2235)
T ss_pred HHH-HHhcChHHHHHHHHHHHHHhcCc---HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceee
Confidence 776 66667889999999999999865 48889999999999999987666888888999999888776666776655
Q ss_pred cccccCC
Q 014913 409 NLRSLFP 415 (416)
Q Consensus 409 ~~~~~~~ 415 (416)
-|-+.+|
T Consensus 1894 TL~kFLP 1900 (2235)
T KOG1789|consen 1894 TLIKFLP 1900 (2235)
T ss_pred ehHHhch
Confidence 5544444
No 132
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.091 Score=52.58 Aligned_cols=252 Identities=13% Similarity=0.170 Sum_probs=156.1
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHH----hcCCC
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILC----NLKIS 182 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~----~l~~~ 182 (416)
+|..|.--+.=|..+-...+ .+.+.= ....+-|.++|+.+ +.+++..+-.+|. .+..+
T Consensus 180 n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~---------------s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDS---------------SDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred CchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHHHHhcC
Confidence 56666555555555433222 111111 24556677888776 3566655544444 34333
Q ss_pred hhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh-HHHHHHH-
Q 014913 183 ELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ-QASKSAL- 260 (416)
Q Consensus 183 ~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~-~~~~~A~- 260 (416)
++ .+ +.. +.++.++..+.+++++++..|..-|..+..-... ..+..-.|.+..+..++.+. .. ..++.+.
T Consensus 243 P~----s~-d~~-~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~ 314 (675)
T KOG0212|consen 243 PS----SM-DYD-DMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSDT-EEMSIKEYAQM 314 (675)
T ss_pred cc----cc-Ccc-cchhhccccccCCcHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCCC-ccccHHHHHHH
Confidence 22 11 234 5889999999999999999998888888765333 33444457777777777765 33 2333332
Q ss_pred --HHHHHhCCCCcchHHHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC
Q 014913 261 --EVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS 337 (416)
Q Consensus 261 --~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~ 337 (416)
..|..+......... ++ .-.|..|.+.+.+. ..+.+-.++.-+..|-....++.-... ....+.|.+.|...+
T Consensus 315 ~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~s 390 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDRS 390 (675)
T ss_pred HHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCch
Confidence 234455544443333 34 23667788888877 677777777777777655555544444 467788888777778
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHH---HhcCCcHHHHHHHHHHHHHHHH
Q 014913 338 QVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLV---LQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 338 ~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~l---l~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+.+...+...|.++|....+. |.++.+..+ ...+ ..-.+.++.-+++.+..
T Consensus 391 d~vvl~~L~lla~i~~s~~~~---------~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSSSNSP---------NLRKFLLSLLEMFKED-TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hHHHHHHHHHHHHHhcCcccc---------cHHHHHHHHHHHHhhh-hHHHHhhhhHHHHHHHH
Confidence 899999999999999987652 334444444 4333 44566777777777765
No 133
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.03 E-value=0.0011 Score=45.57 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
+.+|..|+++|.+++........-....+++.|+.+|.++ ++.++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 4689999999999987776554445567999999999887 779999999999875
No 134
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.013 Score=59.49 Aligned_cols=174 Identities=9% Similarity=0.078 Sum_probs=126.5
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh------hhhccccCCccHHHHHHHhcCCH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK------SLVMGRNGTFVDSLTQIMQRGTY 210 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~------~~i~~~~G~~i~~Lv~lL~~~~~ 210 (416)
.++|.|..+|.+. +...++.|..+|..++.+....- +-+. . .+|.++.+.+++++
T Consensus 128 elLp~L~~~L~s~---------------d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~--~--mipkfl~f~~h~sp 188 (885)
T KOG2023|consen 128 ELLPQLCELLDSP---------------DYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN--I--MIPKFLQFFKHPSP 188 (885)
T ss_pred hHHHHHHHHhcCC---------------cccccchhHHHHHHHHhhhHHHHhhhcccCchH--H--hHHHHHHHHhCCCh
Confidence 4689999999988 57788999999999997653321 1111 2 68889999999999
Q ss_pred HHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhh
Q 014913 211 ESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLL 290 (416)
Q Consensus 211 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~ 290 (416)
.+|..|...+-.+.-. ........-...+..|..+..+. ++++|++.+.+|.-|-.....+-.=.=.++|+..++...
T Consensus 189 kiRs~A~~cvNq~i~~-~~qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq 266 (885)
T KOG2023|consen 189 KIRSHAVGCVNQFIII-QTQALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ 266 (885)
T ss_pred hHHHHHHhhhhheeec-CcHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc
Confidence 9999999998876544 22333333336888888888777 999999999999988664443322222578888888888
Q ss_pred cccchhhhHHHHHHHHHHHcCChhhHHHHHhc-CCchHHHHHHH
Q 014913 291 DSSLERRASEMILTVLDLLCQCAEGRAELLKH-GAGLAIVSKKI 333 (416)
Q Consensus 291 ~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~-~~~v~~Lv~~l 333 (416)
+. ++++.-.|+.....+|..+--+..+..+ ...||.|++-|
T Consensus 267 d~--dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 267 DV--DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred Cc--chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 87 8889999999999999988555544332 14556665543
No 135
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.034 Score=56.13 Aligned_cols=186 Identities=18% Similarity=0.154 Sum_probs=118.5
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHH
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKG 276 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 276 (416)
.++.++.-+.......+..++..|..++......-. .-.+..||.|...|.+. .+++++++..+|.+++..-+|-. |
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I 331 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-I 331 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-H
Confidence 444555444445778899999999988866443333 33458999999999988 99999999999999998777766 2
Q ss_pred HhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc----ChhhhHHHHHHHHHHh
Q 014913 277 VEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV----SQVASERAVRILLSIS 352 (416)
Q Consensus 277 ~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~----~~~~~~~a~~~L~~L~ 352 (416)
. -.+|.|++-+..+ .. -...+...|..-+.-. .+. +-.+..+|-+|.++ +...++.++.+.+|+|
T Consensus 332 -~-~~ip~Lld~l~dp--~~-~~~e~~~~L~~ttFV~-----~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 332 -Q-KIIPTLLDALADP--SC-YTPECLDSLGATTFVA-----EVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred -H-HHHHHHHHHhcCc--cc-chHHHHHhhcceeeee-----eec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 2 2578888888765 21 2233333333222111 111 23344444444433 5577899999999999
Q ss_pred cCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 353 KFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 353 ~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.--+|++-..-.. --.+|.|-..+... .|++|..|+..|.-+.+
T Consensus 401 ~LveDp~~lapfl-~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 401 KLVEDPKDLAPFL-PSLLPGLKENLDDA-VPEVRAVAARALGALLE 444 (569)
T ss_pred HhhcCHHHHhhhH-HHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHH
Confidence 8775533222211 12344444444443 79999999999844444
No 136
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00047 Score=65.32 Aligned_cols=46 Identities=22% Similarity=0.455 Sum_probs=39.2
Q ss_pred ccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+.|-||+|-|.+ =++|||+|.|=..||..|+-+. ...||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCC
Confidence 589999998876 2368999999999999999875 567999998765
No 137
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0074 Score=61.99 Aligned_cols=157 Identities=19% Similarity=0.205 Sum_probs=112.5
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
+++|.|+++|..... ++|.++=.....|-.+|.-++.. .+.-|.. + +++++-+-+++++..-++.|
T Consensus 319 ~v~P~Ll~~L~kqde--------~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~--Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDE--------DDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-H--VLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HhhHHHHHHHHhCCC--------CcccccCcHHHHHHHHHHHHHHH---hcccchh-h--hHHHHHHhcCCcchhhhhHH
Confidence 788999999987421 11111234556666677666532 2233331 3 77777778889999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHhhcccc
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLLLDSSL 294 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL~~~~~ 294 (416)
+.+.+.+-...+..+..-...+++|.++.++.++ +.-++..++|+|..++..-. .-......+.++.|+.-|.+
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--- 460 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--- 460 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---
Confidence 9999999866555544444458999999999977 88899999999999987543 11223335677778887776
Q ss_pred hhhhHHHHHHHHHHHcC
Q 014913 295 ERRASEMILTVLDLLCQ 311 (416)
Q Consensus 295 ~~~~~~~a~~~L~~La~ 311 (416)
.+.+..++++++.+|+.
T Consensus 461 ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 461 EPRVASNVCWAFISLAE 477 (859)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 47899999999999984
No 138
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.051 Score=56.13 Aligned_cols=255 Identities=12% Similarity=0.083 Sum_probs=166.7
Q ss_pred CcHHHHHHHHHHHHHHhcC------hhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCC
Q 014913 108 SPQMQIKCLKKLRSIAAEN------ETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKI 181 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~------~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~ 181 (416)
+..+|..|+++|.+-..-. +..|..|.+ .....-.++ +.+++..|..+|..+..
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq-----vvcEatq~~---------------d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ-----VVCEATQSP---------------DEEIQVAAFQCLVKIMS 246 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhceeee-----eeeecccCC---------------cHHHHHHHHHHHHHHHH
Confidence 4588888888888865421 222222221 122222222 58899999999987765
Q ss_pred Ch-hhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc------------h------hhHhhhhhHHHH
Q 014913 182 SE-LGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP------------M------QLISLRQELFVE 242 (416)
Q Consensus 182 ~~-~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~------------~------~~~~~~~g~i~~ 242 (416)
-. +.....+. . ..+..-+.-+.+.+.++...+...=.+++...-. . .....-.+++|.
T Consensus 247 LyY~~m~~yM~-~--alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~ 323 (859)
T KOG1241|consen 247 LYYEFMEPYME-Q--ALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPV 323 (859)
T ss_pred HHHHHHHHHHH-H--HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHH
Confidence 43 33344444 2 2566667778889999999998888877743110 0 011122367888
Q ss_pred HHHHhcc------CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHH----HhhcccchhhhHHHHHHHHHHHcCC
Q 014913 243 VIQVLHD------HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILID----LLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 243 Lv~lL~~------~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~----lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
|+.+|.. +.++...++|..+|.-++. .++...||+++. -++++ +-.-++.|+.++..+-..
T Consensus 324 Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-------~~~D~Iv~~Vl~Fiee~i~~p--dwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 324 LLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-------CVGDDIVPHVLPFIEENIQNP--DWRNREAAVMAFGSILEG 394 (859)
T ss_pred HHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-------HhcccchhhhHHHHHHhcCCc--chhhhhHHHHHHHhhhcC
Confidence 9998853 1145667777777765543 233334444444 44555 667788899999988776
Q ss_pred hhh--HHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHH
Q 014913 313 AEG--RAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAR 390 (416)
Q Consensus 313 ~~~--~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~ 390 (416)
++. ...++. +++|.++++|...+-.+++-+.+.|..++..-.+ .......-.+.++.|+.=|.. .|+.-.++.
T Consensus 395 p~~~~Lt~iV~--qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e-~~~n~~~l~~~l~~l~~gL~D--ePrva~N~C 469 (859)
T KOG1241|consen 395 PEPDKLTPIVI--QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE-AIINQELLQSKLSALLEGLND--EPRVASNVC 469 (859)
T ss_pred CchhhhhHHHh--hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh-hcccHhhhhHHHHHHHHHhhh--CchHHHHHH
Confidence 553 344444 8999999987755667889999999999987763 345555567888888888865 578888888
Q ss_pred HHHHHHHHh
Q 014913 391 EVLKLHARA 399 (416)
Q Consensus 391 ~ll~~l~~~ 399 (416)
+.+-.|.++
T Consensus 470 WAf~~Laea 478 (859)
T KOG1241|consen 470 WAFISLAEA 478 (859)
T ss_pred HHHHHHHHH
Confidence 888888875
No 139
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.95 E-value=0.28 Score=44.26 Aligned_cols=248 Identities=14% Similarity=0.074 Sum_probs=155.0
Q ss_pred CChHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 93 INKAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 93 ~~~~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
.+.+.+..++-.+ .+++.+..|+..|.+.-+..+.....+-. -|.+..|.+-.-.....- +...- +...+.=..+
T Consensus 23 ~~~dk~~~~i~~l-~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l-~p~~l--~~~qsnRVcn 98 (293)
T KOG3036|consen 23 SNNDKAYQLILSL-VSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSL-SPPTL--TPAQSNRVCN 98 (293)
T ss_pred ccccchhhHHHHh-hCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhccccc-CCCCC--CccccchHHH
Confidence 3445678888888 78888888888887776655555555444 466666654432211000 00000 0012334567
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccH-HHHHHHhc-----CCHHHHHHHHHHHHHhhcccCc-hhhHhhhhhHHHHHH
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVD-SLTQIMQR-----GTYESRAYAVLLLKSMLEVAEP-MQLISLRQELFVEVI 244 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~-~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv 244 (416)
|+..|.-++++++.++.++. + -|| .|-.+|.. +..-.|..+..+|..|...++. -.......++||..+
T Consensus 99 aL~LlQcvASHpdTr~~FL~--A--~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAFLR--A--HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHhcCcchHHHHHH--c--cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 88999999999998877776 3 333 23344432 3466789999999999876542 223344568999999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh--------hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhH
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVE--------AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGR 316 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--------~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~ 316 (416)
+.+..| +...+.-|+..+..+-.++..-..+.. .-.+..++.-|.+.+ +..+..+++.+..+|+.++..|
T Consensus 175 rime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhviRcYlrLsdnprar 252 (293)
T KOG3036|consen 175 RIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVIRCYLRLSDNPRAR 252 (293)
T ss_pred HHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCCHHHH
Confidence 999999 999999999999887766653222211 112233333333332 7888999999999999999998
Q ss_pred HHHHhcCCchHHHH-----HHHHhcChhhhHHHHHHHHHHhc
Q 014913 317 AELLKHGAGLAIVS-----KKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 317 ~~i~~~~~~v~~Lv-----~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
.++... .|... ..+...+...+..-...+.+|+.
T Consensus 253 ~aL~~c---lPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 253 AALRSC---LPDQLRDGTFSLLLKDDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHHhh---CcchhccchHHHHHhcChhHHHHHHHHHHHhcc
Confidence 877542 22211 12333445556655556655553
No 140
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.94 E-value=0.00066 Score=63.06 Aligned_cols=51 Identities=16% Similarity=0.494 Sum_probs=40.4
Q ss_pred CCcccCcCccccCCC--ce-ec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCC
Q 014913 7 PTFFLCPISLAIMKD--PV-TV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECEL 61 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~--Pv-~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l 61 (416)
...|.|||++..|.. +. .+ +|||+|+..+|.+.- . ...||+|+++|. ..++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~-~~~Cp~c~~~f~-~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--K-SKKCPVCGKPFT-EEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--c-cccccccCCccc-cCCE
Confidence 567999999999954 33 34 999999999999973 1 457999999998 5443
No 141
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.073 Score=49.87 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHH--HHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFL--ASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~L--v~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
.+-++.++..+.+ +.++-..|...|..++.... .-+.|.++.....+ +++-... +.-++..
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakc---------------ndiaRvR 190 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKC---------------NDIARVR 190 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhh---------------hhHHHHH
Confidence 3445556666643 45777888899999888643 66777776655543 3333333 2445666
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH 250 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 250 (416)
.+..+..+.+-......-.. ..| .+..|..=|+. .+.-++.++......|+..+..+.....+ |.|..+..+....
T Consensus 191 VleLIieifSiSpesaneck-kSG-LldlLeaElkGteDtLVianciElvteLaeteHgreflaQe-glIdlicnIIsGa 267 (524)
T KOG4413|consen 191 VLELIIEIFSISPESANECK-KSG-LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE-GLIDLICNIISGA 267 (524)
T ss_pred HHHHHHHHHhcCHHHHhHhh-hhh-HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh-hHHHHHHHHhhCC
Confidence 77777666554433334444 364 77777666665 56778888999999999876666655544 9999999988743
Q ss_pred -CChHHHHHHHH----HHHHhCCCCcchHHHHhh--CcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcC
Q 014913 251 -ISQQASKSALE----VLVNICPWGRNRIKGVEA--GAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHG 323 (416)
Q Consensus 251 -~~~~~~~~A~~----aL~nLs~~~~n~~~i~~~--G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~ 323 (416)
.++-.+-.++. .+.+++..+-.-.+++++ -+|....+++... |+..++.|..+|..|-++.++...+..
T Consensus 268 dsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn--DpdaieaAiDalGilGSnteGadlllk-- 343 (524)
T KOG4413|consen 268 DSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN--DPDAIEAAIDALGILGSNTEGADLLLK-- 343 (524)
T ss_pred CCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC--CchHHHHHHHHHHhccCCcchhHHHhc--
Confidence 13332322322 223332222122222221 2345556677777 899999999999999999989887776
Q ss_pred CchHHHHHHHHh---cC-hhhhHHHHHHHHHHhcC
Q 014913 324 AGLAIVSKKILR---VS-QVASERAVRILLSISKF 354 (416)
Q Consensus 324 ~~v~~Lv~~l~~---~~-~~~~~~a~~~L~~L~~~ 354 (416)
-+-|..-.++.+ .+ ..-++.++.+|.++++.
T Consensus 344 TgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 344 TGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred cCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 334443333333 22 35578888899998874
No 142
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.2 Score=50.78 Aligned_cols=250 Identities=13% Similarity=0.122 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSL 189 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 189 (416)
..|..|...+..+..+. .-..+.+.+.+..|-....... +..-++.+.-+.-... ......
T Consensus 149 ~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~--------------~~~~re~~~~a~~~~~---~~Lg~~ 209 (569)
T KOG1242|consen 149 AERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKK--------------SALNREAALLAFEAAQ---GNLGPP 209 (569)
T ss_pred HHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccc--------------hhhcHHHHHHHHHHHH---HhcCCC
Confidence 66667777777776653 3445556677777777776552 1222321221111111 011122
Q ss_pred hccccCCccHHHHHHHh---cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 190 VMGRNGTFVDSLTQIMQ---RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
.. ++ .++.+..+|. +....+|+.|..+...+.+.-.. ..+. -.+|+++.-+... .+..+.+++..|..+
T Consensus 210 ~E--Py-iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~aVK-~llpsll~~l~~~-kWrtK~aslellg~m 281 (569)
T KOG1242|consen 210 FE--PY-IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YAVK-LLLPSLLGSLLEA-KWRTKMASLELLGAM 281 (569)
T ss_pred CC--ch-HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---chhh-HhhhhhHHHHHHH-hhhhHHHHHHHHHHH
Confidence 22 52 5666666655 34677888877777766533211 1122 3667777766666 789999999999999
Q ss_pred CCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHH
Q 014913 267 CPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVR 346 (416)
Q Consensus 267 s~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~ 346 (416)
+...+..-...-..+||.|.+.|-+. .+++++.+-.+|..++..-+|-. |. --+|.|++.+...+. -...++.
T Consensus 282 ~~~ap~qLs~~lp~iiP~lsevl~DT--~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~-~~~e~~~ 354 (569)
T KOG1242|consen 282 ADCAPKQLSLCLPDLIPVLSEVLWDT--KPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSC-YTPECLD 354 (569)
T ss_pred HHhchHHHHHHHhHhhHHHHHHHccC--CHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCccc-chHHHHH
Confidence 98888777777788999999999988 89999999999999988665554 22 236777776553321 2333333
Q ss_pred HHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhcc
Q 014913 347 ILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV---DNSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 347 ~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~---~~~~~~k~~A~~ll~~l~~~~~ 401 (416)
.|..-.- ... +.+-.+..++.+|+. +-+...+++++.+..++.+.|+
T Consensus 355 ~L~~ttF-------V~~-V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 355 SLGATTF-------VAE-VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred hhcceee-------eee-ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence 3332111 111 112334444444432 2266788999999999999874
No 143
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.90 E-value=0.0031 Score=49.17 Aligned_cols=67 Identities=9% Similarity=0.115 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhc
Q 014913 112 QIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVM 191 (416)
Q Consensus 112 ~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~ 191 (416)
+..-+..|.+++.+++.+++.+++.|+||.+++.-.-+. .+|-+++.|+.++.+|+.+.++++++|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~-------------~nP~irEwai~aiRnL~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDD-------------HNPFIREWAIFAIRNLCEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCc-------------ccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 455678899999999999999999999999998865441 3789999999999999999888888887
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.82 E-value=0.00052 Score=65.93 Aligned_cols=43 Identities=23% Similarity=0.526 Sum_probs=36.2
Q ss_pred ccCcCccccCCCce----ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPV----TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv----~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-+||||++.|-+-+ ++.|.|+|=-.|+.+|+. .+||+|+-..+
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 46999999999887 458999999999999984 47999975544
No 145
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.019 Score=58.23 Aligned_cols=257 Identities=14% Similarity=0.124 Sum_probs=155.9
Q ss_pred CChHHHHH-HHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 93 INKAQITK-LLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 93 ~~~~~i~~-lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
-+++.+.. ++.... .++.+|..|+..|..|.....-.+. .....+..|+.+ +..++.
T Consensus 194 ~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~---------------~e~VR~ 252 (823)
T KOG2259|consen 194 HDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDD---------------YEDVRK 252 (823)
T ss_pred ccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcch---------------HHHHHH
Confidence 34444444 555554 3567788888888777664332222 244567777766 478888
Q ss_pred HHHHHHH---hcC--CC--hhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 171 EALSILC---NLK--IS--ELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 171 ~A~~~L~---~l~--~~--~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
.|+.++. |.. .. ..+..+++. .++..+...++..+..+|..|+.+|+.+-...+.--....+ .-+
T Consensus 253 aAvqlv~v~gn~~p~~~e~e~~e~kl~D----~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKl 324 (823)
T KOG2259|consen 253 AAVQLVSVWGNRCPAPLERESEEEKLKD----AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKL 324 (823)
T ss_pred HHHHHHHHHHhcCCCcccchhhhhhhHH----HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHH
Confidence 8876554 444 11 122344554 48999999999999999999999999885432211111111 111
Q ss_pred HHHhccCCChHHHHHHHHHHH-Hh--CC------------CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHH
Q 014913 244 IQVLHDHISQQASKSALEVLV-NI--CP------------WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDL 308 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~-nL--s~------------~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~ 308 (416)
..=++ .+.........|+ +. ++ .++.-..++.+|+--++|.-|.+. --++++.|+..+..
T Consensus 325 ms~lR---Rkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~EVR~AAV~Sl~~ 399 (823)
T KOG2259|consen 325 MSRLR---RKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYEVRRAAVASLCS 399 (823)
T ss_pred hhhhh---hhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH--HHHHHHHHHHHHHH
Confidence 11111 1112222222222 22 11 112334578899999999999887 78999999999999
Q ss_pred HcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHH
Q 014913 309 LCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDK 388 (416)
Q Consensus 309 La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~ 388 (416)
|+.+.-+ +.. .++..||.++...-..++..|+.+|..|+.+-. ++ ..-++.++..|... +...|+.
T Consensus 400 La~ssP~---FA~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~-----eeql~~il~~L~D~-s~dvRe~ 465 (823)
T KOG2259|consen 400 LATSSPG---FAV--RALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IR-----EEQLRQILESLEDR-SVDVREA 465 (823)
T ss_pred HHcCCCC---cHH--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ec-----HHHHHHHHHHHHhc-CHHHHHH
Confidence 9874322 222 346678874443345789999999999987632 22 23455666666553 7777777
Q ss_pred HHHHHHHHH
Q 014913 389 AREVLKLHA 397 (416)
Q Consensus 389 A~~ll~~l~ 397 (416)
...+|+..+
T Consensus 466 l~elL~~~~ 474 (823)
T KOG2259|consen 466 LRELLKNAR 474 (823)
T ss_pred HHHHHHhcC
Confidence 777776543
No 146
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.75 E-value=0.071 Score=54.98 Aligned_cols=256 Identities=12% Similarity=0.129 Sum_probs=144.3
Q ss_pred HHHHh-cCcHHHHHHHHHHHHHHhcCh--hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHh
Q 014913 102 LNEAA-KSPQMQIKCLKKLRSIAAENE--TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCN 178 (416)
Q Consensus 102 v~~l~-~~~~~~~~Al~~L~~l~~~~~--~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~ 178 (416)
+..|. .++.+|.+|+..+..++.--. .--+.+...|.| |..-|... .+++.-..+.+|..
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee---------------ypEvLgsILgAika 867 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE---------------YPEVLGSILGAIKA 867 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc---------------cHHHHHHHHHHHHH
Confidence 44443 356788888877777664211 111233444543 44555443 57777777766665
Q ss_pred cCCCh--hhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHH
Q 014913 179 LKISE--LGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQAS 256 (416)
Q Consensus 179 l~~~~--~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 256 (416)
+...- .....=+ . +.+|.|.-+|++....+++++...++.++.......-...=-..---|+.+|+.. +.+.+
T Consensus 868 I~nvigm~km~pPi---~-dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iR 942 (1172)
T KOG0213|consen 868 IVNVIGMTKMTPPI---K-DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIR 942 (1172)
T ss_pred HHHhccccccCCCh---h-hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 54221 1112222 3 4999999999999999999999999999966443222211112334588889888 88999
Q ss_pred HHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc
Q 014913 257 KSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 257 ~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~ 336 (416)
.+|..++..++. .+.-..++..|+.-|+.. +...+.....+++..+. .+.- -..+|+|+.--...
T Consensus 943 Raa~nTfG~Iak------aIGPqdVLatLlnnLkvq--eRq~RvcTtvaIaIVaE---~c~p----FtVLPalmneYrtP 1007 (1172)
T KOG0213|consen 943 RAAVNTFGYIAK------AIGPQDVLATLLNNLKVQ--ERQNRVCTTVAIAIVAE---TCGP----FTVLPALMNEYRTP 1007 (1172)
T ss_pred HHHHhhhhHHHH------hcCHHHHHHHHHhcchHH--HHHhchhhhhhhhhhhh---hcCc----hhhhHHHHhhccCc
Confidence 999999887654 343455566666666544 22222222222222211 1111 12345555432222
Q ss_pred ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 337 SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 337 ~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
...+|.-.+.+|..+-..-++ ..+..+. -..|.|-.-|.. -+...|+-|..+++.++-
T Consensus 1008 e~nVQnGVLkalsf~Feyige-mskdYiy--av~PlleDAlmD-rD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1008 EANVQNGVLKALSFMFEYIGE-MSKDYIY--AVTPLLEDALMD-RDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred hhHHHHhHHHHHHHHHHHHHH-HhhhHHH--HhhHHHHHhhcc-ccHHHHHHHHHHHHHHhc
Confidence 346677666676666544321 1122211 234444444544 488899999999988876
No 147
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.72 E-value=0.22 Score=48.59 Aligned_cols=219 Identities=15% Similarity=0.107 Sum_probs=149.0
Q ss_pred HHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC------ch---hhHhhhhhHH
Q 014913 170 DEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE------PM---QLISLRQELF 240 (416)
Q Consensus 170 ~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~------~~---~~~~~~~g~i 240 (416)
..++.-+.-+|.-++-..-++. . .+++.|+.+|.+.|.++....+..|..|+..+- .. ....++.+++
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lve--l-n~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVE--L-NAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHH--h-ccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 3455556666766654334444 4 599999999999999999999999999985431 11 1123455788
Q ss_pred HHHHHHhccC-----CChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh
Q 014913 241 VEVIQVLHDH-----ISQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 241 ~~Lv~lL~~~-----~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~ 314 (416)
+.||+-+..= .......+.+..+-|+..-. .....+++.|.+..|+.-+.....-...+..|..+|..+-.+..
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~ 258 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD 258 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc
Confidence 8888877521 02244566778888887644 57788888998888887554432245678899999999877655
Q ss_pred -hHHHHHhcCCchHHHHHHHHh---cC---hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHH
Q 014913 315 -GRAELLKHGAGLAIVSKKILR---VS---QVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKD 387 (416)
Q Consensus 315 -~~~~i~~~~~~v~~Lv~~l~~---~~---~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~ 387 (416)
++..... -+||..+++-+-- .+ ..-++.-....-.||+.-..++.+..+...-+++...-+++. ....+.
T Consensus 259 e~~~~~~~-l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk~sr~ 335 (536)
T KOG2734|consen 259 ENRKLLGP-LDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KKVSRG 335 (536)
T ss_pred hhhhhhcC-cccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HHHhhh
Confidence 5555555 7899999886642 22 235666666677777766656678889988888887777754 344455
Q ss_pred HHHHHHH
Q 014913 388 KAREVLK 394 (416)
Q Consensus 388 ~A~~ll~ 394 (416)
.|-.+|.
T Consensus 336 SalkvLd 342 (536)
T KOG2734|consen 336 SALKVLD 342 (536)
T ss_pred hHHHHHH
Confidence 5555544
No 148
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.044 Score=56.67 Aligned_cols=266 Identities=17% Similarity=0.171 Sum_probs=144.7
Q ss_pred HHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 014913 99 TKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILC 177 (416)
Q Consensus 99 ~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~ 177 (416)
.++...+. .++.+|..|.-.+.++-. .+.+.....|.++.|-.++.++ ++.+..+|+.+|.
T Consensus 124 ~Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~---------------~p~VVAnAlaaL~ 185 (734)
T KOG1061|consen 124 DPLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS---------------NPMVVANALAALS 185 (734)
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC---------------CchHHHHHHHHHH
Confidence 35555554 357888887777766643 3667888899999999999965 6899999999999
Q ss_pred hcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHH
Q 014913 178 NLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASK 257 (416)
Q Consensus 178 ~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 257 (416)
++.....+. ....-.. ..+..+++ ..+......-+.+|-.++....... ......+..+...|++. +..+.-
T Consensus 186 eI~e~~~~~-~~~~l~~-~~~~~lL~---al~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~-n~avvl 257 (734)
T KOG1061|consen 186 EIHESHPSV-NLLELNP-QLINKLLE---ALNECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHA-NSAVVL 257 (734)
T ss_pred HHHHhCCCC-CcccccH-HHHHHHHH---HHHHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccC-CcceEe
Confidence 887554321 1111001 12333333 3333344444555555654322222 12224556666666666 666677
Q ss_pred HHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-Chhh-HH------------------
Q 014913 258 SALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEG-RA------------------ 317 (416)
Q Consensus 258 ~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~-~~------------------ 317 (416)
.+...+.++.....+.....-.-.-++|+.++... . +++-.|+.=+..+-. .++. +.
T Consensus 258 savKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~--~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~e 334 (734)
T KOG1061|consen 258 SAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE--S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLE 334 (734)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc--c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHH
Confidence 77777777655444333333344556666666654 2 333322222221111 1110 00
Q ss_pred ------HHHhcCCchHHHHHHHH----hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHH
Q 014913 318 ------ELLKHGAGLAIVSKKIL----RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKD 387 (416)
Q Consensus 318 ------~i~~~~~~v~~Lv~~l~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~ 387 (416)
.+..++. ++.++.-+. ..+....+.++.++.+++....+ . ++.|..|+++++.. .+-..+
T Consensus 335 Kleil~~la~~~n-l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-----~---~~cv~~lLell~~~-~~yvvq 404 (734)
T KOG1061|consen 335 KLEILIELANDAN-LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-----S---NDCVSILLELLETK-VDYVVQ 404 (734)
T ss_pred HHHHHHHHhhHhH-HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-----h---hhhHHHHHHHHhhc-ccceee
Confidence 0000000 111111111 12345566777777777753321 1 78999999999865 344455
Q ss_pred HHHHHHHHHHHhccCC
Q 014913 388 KAREVLKLHARAWKNS 403 (416)
Q Consensus 388 ~A~~ll~~l~~~~~~~ 403 (416)
.+...++.+-|+|.+.
T Consensus 405 E~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 405 EAIVVIRDILRKYPNK 420 (734)
T ss_pred ehhHHHHhhhhcCCCc
Confidence 6677777777776554
No 149
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.69 E-value=0.019 Score=48.57 Aligned_cols=126 Identities=10% Similarity=0.138 Sum_probs=96.3
Q ss_pred hhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC-
Q 014913 130 KRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG- 208 (416)
Q Consensus 130 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~- 208 (416)
...+.+.||+..|+++++++... +....+....++.+..+|-.+.-...+.+. . ..|..++..++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~---------~~~~~~~La~~L~af~eLMeHg~vsWd~l~--~-~FI~Kia~~Vn~~~ 71 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEI---------QPCKGEILAYALTAFVELMEHGIVSWDTLS--D-SFIKKIASYVNSSA 71 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCcc---------CcchHHHHHHHHHHHHHHHhcCcCchhhcc--H-HHHHHHHHHHcccc
Confidence 45677889999999999987310 000136788899999999877654456665 3 4999999999865
Q ss_pred -CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 209 -TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 209 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
+..+.+.|..+|.++..........+...=-++.|+..|+.. +.+.+.+|...|-.|-.
T Consensus 72 ~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 72 MDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFL 131 (160)
T ss_pred ccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHh
Confidence 588999999999999977665455555444688999999998 99999999998888743
No 150
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.65 E-value=0.0075 Score=47.05 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHh
Q 014913 255 ASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLK 321 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~ 321 (416)
.+...++.|.||+... .++..+.+.|+||.++..-.-+..+|-++|.|..++++|+.+ ++++..+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999998755 599999999999999998876555899999999999999985 555555543
No 151
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.65 E-value=0.1 Score=52.81 Aligned_cols=257 Identities=12% Similarity=0.142 Sum_probs=145.8
Q ss_pred HHHHHHhc-CcHHHHHHHHHHHHHHhcCh--hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 100 KLLNEAAK-SPQMQIKCLKKLRSIAAENE--TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 100 ~lv~~l~~-~~~~~~~Al~~L~~l~~~~~--~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
.++..|.+ .|.+|..|+.....++.--. .--+.+.+.|.| |..-|... ++++.-..+.++
T Consensus 608 tiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~---------------ypEvLgsil~Ai 670 (975)
T COG5181 608 TILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED---------------YPEVLGSILKAI 670 (975)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc---------------cHHHHHHHHHHH
Confidence 44555543 57888888877666654211 112334445543 34444433 588888777777
Q ss_pred HhcCCChhh--hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 177 CNLKISELG--LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 177 ~~l~~~~~~--~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
+.+...-.- .+.=+ . +.+|.|..+|++....+..+....++.++...........=-..---|+.+|++. +.+
T Consensus 671 ~~I~sv~~~~~mqpPi---~-~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~-nKe 745 (975)
T COG5181 671 CSIYSVHRFRSMQPPI---S-GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW-NKE 745 (975)
T ss_pred HHHhhhhcccccCCch---h-hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh-hHH
Confidence 765533211 11122 4 4999999999999999999999999999976544322211112334588999988 999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHH
Q 014913 255 ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKIL 334 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~ 334 (416)
.+.+|..++.-++. .+.-..++..|+.-|+.. +...+.....++...+.. +.- -..+|.|+.--.
T Consensus 746 iRR~A~~tfG~Is~------aiGPqdvL~~LlnnLkvq--eRq~RvctsvaI~iVae~---cgp----fsVlP~lm~dY~ 810 (975)
T COG5181 746 IRRNATETFGCISR------AIGPQDVLDILLNNLKVQ--ERQQRVCTSVAISIVAEY---CGP----FSVLPTLMSDYE 810 (975)
T ss_pred HHHhhhhhhhhHHh------hcCHHHHHHHHHhcchHH--HHHhhhhhhhhhhhhHhh---cCc----hhhHHHHHhccc
Confidence 99999998887664 333344556666666554 222222222222222210 000 123344433222
Q ss_pred hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHH-HHhcCCcHHHHHHHHHHHHHHHH
Q 014913 335 RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCL-VLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 335 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~-ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.....+|.-.+.++...-..-++ ..+..+ -.+.+|++ -|.. -++..|+-|..+++.|.-
T Consensus 811 TPe~nVQnGvLkam~fmFeyig~-~s~dYv---y~itPlleDAltD-rD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYIGQ-ASLDYV---YSITPLLEDALTD-RDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHHHH-HHHHHH---HHhhHHHHhhhcc-cchHHHHHHHHHHHHHhc
Confidence 22335666666666665544332 122222 23444443 3443 488899999999988876
No 152
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.64 E-value=0.15 Score=47.66 Aligned_cols=226 Identities=15% Similarity=0.111 Sum_probs=150.4
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc--CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR--GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
+-.+--|+.+|.++....+.+..+-.+. ..-..++++|++ |..++|-+...+++-++......+.+-.....|.-|
T Consensus 163 ~lTrlfav~cl~~l~~~~e~R~i~waen--tcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVEKRKIEWAEN--TCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHh--hHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4457788999999998887665555543 367788999987 578899999999999987765554443344678889
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCC-CC-cchHHHHhhCcHHHHHHHhhccc-chhhhHHHH---HHHHHH----HcCCh
Q 014913 244 IQVLHDHISQQASKSALEVLVNICP-WG-RNRIKGVEAGAVSILIDLLLDSS-LERRASEMI---LTVLDL----LCQCA 313 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~-~~-~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~~~a---~~~L~~----La~~~ 313 (416)
+++.++.....+.+-+++.+.|++. .+ .....+.-.|-+.+-+++|.... .|++++... -..|.+ |+..+
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD 320 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD 320 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999877556778888999999886 32 35566666776777778776543 133333221 111111 11111
Q ss_pred ------------------------hhHHHHHhcC-CchHHHHHHHHhcChh-hhHHHHHHHHHHhcCCCChHHHHHHHhc
Q 014913 314 ------------------------EGRAELLKHG-AGLAIVSKKILRVSQV-ASERAVRILLSISKFSATNSVLQEMLQI 367 (416)
Q Consensus 314 ------------------------~~~~~i~~~~-~~v~~Lv~~l~~~~~~-~~~~a~~~L~~L~~~~~~~~~~~~i~~~ 367 (416)
.|-..+..+. ..+..|.+++....+. .-..|+.=+..+.+..+ +.+..+.+-
T Consensus 321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P--E~~~vl~Ky 398 (432)
T COG5231 321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP--EINAVLSKY 398 (432)
T ss_pred HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc--hHHHHHHHh
Confidence 1222222222 2345666655554443 34455556666666655 478888899
Q ss_pred ChHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 014913 368 GVVAKLCLVLQVDNSMKTKDKAREVLKLH 396 (416)
Q Consensus 368 G~v~~L~~ll~~~~~~~~k~~A~~ll~~l 396 (416)
|+=+.++.++..+ +++.|-.|.+++..+
T Consensus 399 g~k~~im~L~nh~-d~~VkfeAl~a~q~~ 426 (432)
T COG5231 399 GVKEIIMNLINHD-DDDVKFEALQALQTC 426 (432)
T ss_pred hhHHHHHHHhcCC-CchhhHHHHHHHHHH
Confidence 9999999999765 899999998888765
No 153
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.64 E-value=0.17 Score=45.65 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh-hhhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL-GLKS 188 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~-~~~~ 188 (416)
.-..+|+.-|+-++.+ ++.|..+.++..---|-.+|....... ..+-++-.++.++..|...++ +...
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r----------~fEyLRLtsLGVIgaLvk~dd~eVi~ 162 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSR----------PFEYLRLTSLGVIGALVKNDDQEVIR 162 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCC----------chHHHhHHHHHHHHHHHhcCcHHHHH
Confidence 3345666666666665 559999999886666667775442110 134678888999998887543 2333
Q ss_pred hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhh-------HHHHH-HHHhccCCChHHHHHHH
Q 014913 189 LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQE-------LFVEV-IQVLHDHISQQASKSAL 260 (416)
Q Consensus 189 ~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-------~i~~L-v~lL~~~~~~~~~~~A~ 260 (416)
++.. . +.||..++.+..|+...+.-|+.++..+-.++.+-.-+..... .+..+ .++.+.+ +..+.++++
T Consensus 163 fLl~-T-eIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p-s~RllKhvi 239 (293)
T KOG3036|consen 163 FLLT-T-EIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP-SPRLLKHVI 239 (293)
T ss_pred HHHH-h-hhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHH
Confidence 4442 5 4999999999999999999999999998877765544433222 22223 3344456 899999999
Q ss_pred HHHHHhCCCCcchHHHHh
Q 014913 261 EVLVNICPWGRNRIKGVE 278 (416)
Q Consensus 261 ~aL~nLs~~~~n~~~i~~ 278 (416)
++..+|+.++..|..+..
T Consensus 240 RcYlrLsdnprar~aL~~ 257 (293)
T KOG3036|consen 240 RCYLRLSDNPRARAALRS 257 (293)
T ss_pred HHHHHhcCCHHHHHHHHh
Confidence 999999999988776643
No 154
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.00052 Score=61.47 Aligned_cols=49 Identities=20% Similarity=0.445 Sum_probs=41.5
Q ss_pred CcccCcCccccCCCce----------ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPV----------TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv----------~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++-.|.||.+-+.+-+ .++|+|+|=..||.-|.--++..+||-|++...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 4568999998777665 789999999999999987666899999988765
No 155
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.19 Score=52.35 Aligned_cols=241 Identities=12% Similarity=0.097 Sum_probs=137.0
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcH--------------HHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAV--------------EFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i--------------~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
+++..|..|+..|.++....+.|-+++.=.+.. ..++.+|+.. |..++..|
T Consensus 306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp---------------D~SIkrra 370 (866)
T KOG1062|consen 306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP---------------DVSIKRRA 370 (866)
T ss_pred CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC---------------cHHHHHHH
Confidence 567889999999999888877777665422211 1244555544 68899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc--cCchhhHh------------hhhh
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV--AEPMQLIS------------LRQE 238 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~------------~~~g 238 (416)
+..+..|... .|.+. .++.|+..|.+.+.+.+...+.-+..++.. .++.|.+- +...
T Consensus 371 lELs~~lvn~-~Nv~~--------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d 441 (866)
T KOG1062|consen 371 LELSYALVNE-SNVRV--------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD 441 (866)
T ss_pred HHHHHHHhcc-ccHHH--------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchh
Confidence 9999887733 33322 445688888888999999999999998843 33444331 1112
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc---CCh--
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC---QCA-- 313 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La---~~~-- 313 (416)
++..|+.++.++ ..+..+.+...||.- +...+ ++... .+.+...|.|+|..=. .++
T Consensus 442 v~~nll~LIa~~-~~e~~~y~~~rLy~a---------~~~~~-------~~~is--~e~l~qVa~W~IGEYGdlll~~~~ 502 (866)
T KOG1062|consen 442 VVNNLLRLIANA-FQELHEYAVLRLYLA---------LSEDT-------LLDIS--QEPLLQVASWCIGEYGDLLLDGAN 502 (866)
T ss_pred hHHHHHHHHhcC-CcchhhHHHHHHHHH---------Hhhhh-------hhhhh--hhhHHHHHHHHhhhhhHHhhcCcc
Confidence 333333333333 223333333333221 01110 11111 3445666666665422 111
Q ss_pred -hhHHHHHhcCCchHHHHHHHHhc--ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHH
Q 014913 314 -EGRAELLKHGAGLAIVSKKILRV--SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAR 390 (416)
Q Consensus 314 -~~~~~i~~~~~~v~~Lv~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~ 390 (416)
+.-..+-+ ...+..|-+.+.+. +...+.+|+.+|..|+..-.. .. .-++.|+.-..+.-+-+.|++|.
T Consensus 503 ~~~p~~vte-sdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s--~~------~ri~~lI~~~~~s~~~elQQRa~ 573 (866)
T KOG1062|consen 503 EEEPIKVTE-SDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS--SS------ERIKQLISSYKSSLDTELQQRAV 573 (866)
T ss_pred ccCCCcCCH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc--cH------HHHHHHHHHhcccccHHHHHHHH
Confidence 11112222 45566666666654 457899999999999986543 11 12444444444444677888888
Q ss_pred HHHHHHHHh
Q 014913 391 EVLKLHARA 399 (416)
Q Consensus 391 ~ll~~l~~~ 399 (416)
..=..+.++
T Consensus 574 E~~~l~~~~ 582 (866)
T KOG1062|consen 574 EYNALFAKD 582 (866)
T ss_pred HHHHHHHHH
Confidence 866655454
No 156
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.44 E-value=0.65 Score=44.33 Aligned_cols=198 Identities=16% Similarity=0.157 Sum_probs=113.3
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHh-hhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC---Ccch
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLIS-LRQELFVEVIQVLHDHISQQASKSALEVLVNICPW---GRNR 273 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~n~ 273 (416)
+...+..|...+...|+.+...|.++....-....+. ...-.+..+.+.++.+ +.+-+..|+.++.-|+.. .+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 4455666667788999999999998865432222221 1224678888889888 656667777777766654 2455
Q ss_pred HHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC---C-hhhHHHHHhcCCchHHHHHHHHhcC----------hh
Q 014913 274 IKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ---C-AEGRAELLKHGAGLAIVSKKILRVS----------QV 339 (416)
Q Consensus 274 ~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~---~-~~~~~~i~~~~~~v~~Lv~~l~~~~----------~~ 339 (416)
..+.+. ..|.|...+.+++....++..++.+|..++. . .+.-...+.....+-.+. .+...+ ..
T Consensus 124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~-~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS-ILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH-hcCcCCCcccccCCCccH
Confidence 566654 7899999998874344455555556665543 2 112221112111111111 111111 12
Q ss_pred hhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Q 014913 340 ASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 340 ~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~ 401 (416)
..-.|+.+-..|...-+..++. ... ...++.|..+|++. +...|-.|...|..|-+..+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 3333333333344333322233 222 35699999999875 88899999998888877543
No 157
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=1.1 Score=46.34 Aligned_cols=250 Identities=14% Similarity=0.149 Sum_probs=137.5
Q ss_pred HHHHHHHh-cCcHHHHHHHHHHHHHHhcCh-hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 99 TKLLNEAA-KSPQMQIKCLKKLRSIAAENE-TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 99 ~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
..++..|. +-|-.|.+|+..|+++...-+ ..|.+ +|-|+.-|..+ |+.++..|+.++
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~------FprL~EkLeDp---------------Dp~V~SAAV~VI 205 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC------FPRLVEKLEDP---------------DPSVVSAAVSVI 205 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh------HHHHHHhccCC---------------CchHHHHHHHHH
Confidence 34444453 236777777777777665433 23433 56677777766 577777777777
Q ss_pred HhcCCChhhh------------------hh----------------hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHH
Q 014913 177 CNLKISELGL------------------KS----------------LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKS 222 (416)
Q Consensus 177 ~~l~~~~~~~------------------~~----------------~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~ 222 (416)
++||.-+..+ .- -++ . ..+++|.+++.+.. |...|+.
T Consensus 206 CELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg--K-KLieplt~li~sT~------AmSLlYE 276 (877)
T KOG1059|consen 206 CELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG--K-KLIEPITELMESTV------AMSLLYE 276 (877)
T ss_pred HHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh--h-hhhhHHHHHHHhhH------HHHHHHH
Confidence 7777543311 00 001 1 24555666655432 2222222
Q ss_pred h---------hcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc
Q 014913 223 M---------LEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS 293 (416)
Q Consensus 223 l---------~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~ 293 (416)
+ +.........+ .-++.-|--++.+. |+.++--++-|++.+.....- .+.+ --..+++.|.+.
T Consensus 277 CvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fieds-DqNLKYlgLlam~KI~ktHp~---~Vqa-~kdlIlrcL~Dk- 348 (877)
T KOG1059|consen 277 CVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDS-DQNLKYLGLLAMSKILKTHPK---AVQA-HKDLILRCLDDK- 348 (877)
T ss_pred HHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcC-CccHHHHHHHHHHHHhhhCHH---HHHH-hHHHHHHHhccC-
Confidence 2 22111111111 12555666666666 778888888887777653321 1111 125567888887
Q ss_pred chhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcCh-hhhHHHHHHHHHHhcCCCChHHHHHHHh-cChHH
Q 014913 294 LERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQ-VASERAVRILLSISKFSATNSVLQEMLQ-IGVVA 371 (416)
Q Consensus 294 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~i~~-~G~v~ 371 (416)
|+.++-.|+..|.-+.... |-.+|+. .|+..+...+. .-+..-+.-+..+|+.+ .-+.+.+ .=-+.
T Consensus 349 -D~SIRlrALdLl~gmVskk-Nl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~s----nY~~ItdFEWYls 416 (877)
T KOG1059|consen 349 -DESIRLRALDLLYGMVSKK-NLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQS----NYQYITDFEWYLS 416 (877)
T ss_pred -CchhHHHHHHHHHHHhhhh-hHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhhh----hhhhhhhHHHHHH
Confidence 8999999999999887643 4444433 56666655443 33444444444555543 2344444 23455
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 372 KLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 372 ~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.|+++.+-.++..+...|.+++...-|
T Consensus 417 VlveLa~l~~~~~G~~I~eQi~Dv~iR 443 (877)
T KOG1059|consen 417 VLVELARLEGTRHGSLIAEQIIDVAIR 443 (877)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhee
Confidence 666666666666777777777665554
No 158
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.25 Score=49.58 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=145.9
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
++..+...+.-|..|-.-++ .+++.-.+ ..++.|...|..++.++|..+-.+|.++-..-.+....+.....++.||
T Consensus 180 n~~tR~flv~Wl~~Lds~P~--~~m~~yl~-~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv 256 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPD--LEMISYLP-SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV 256 (675)
T ss_pred CchHHHHHHHHHHHHhcCCc--HHHHhcch-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc
Confidence 46667776666665543333 23443234 4777888899999999998887777765432222222223346789999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchh-hhHHHHHHH---HHHHcCChhhHHHHH
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLER-RASEMILTV---LDLLCQCAEGRAELL 320 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~-~~~~~a~~~---L~~La~~~~~~~~i~ 320 (416)
.-+.+. .+..+..|+.-|.....-..+.-...-.|++..++..+.+. ++ .+++.+..+ |..+...+.....+
T Consensus 257 ~~l~ss-~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~--e~~~i~~~a~~~n~~l~~l~s~~~~~~~i- 332 (675)
T KOG0212|consen 257 PHLQSS-EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT--EEMSIKEYAQMVNGLLLKLVSSERLKEEI- 332 (675)
T ss_pred ccccCC-cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC--ccccHHHHHHHHHHHHHHHHhhhhhcccc-
Confidence 999998 89999999888888766554444444478888888888776 44 355555433 44455544444332
Q ss_pred hcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 321 KHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 321 ~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.-...+..|.+.+.......+-.+..-+..|-...++ .-.......++.|+.-|.. .++..-..+..++..+..
T Consensus 333 d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 333 DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASICS 406 (675)
T ss_pred chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHhc
Confidence 2123456677766666667777777777777776664 3334456788999888855 588888888888877765
No 159
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0018 Score=61.49 Aligned_cols=60 Identities=25% Similarity=0.481 Sum_probs=45.6
Q ss_pred ccCcCccccCCCce-----ecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHH
Q 014913 10 FLCPISLAIMKDPV-----TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRL 70 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv-----~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~ 70 (416)
.+||||.+-+.-|+ .+.|||-|-..||++|+-..-...||.|...-. ..++.+...+|..
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat-kr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT-KRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH-HHHHHHHHHHHHH
Confidence 57999998887775 568999999999999996433578999976665 5566665555433
No 160
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.30 E-value=0.0046 Score=41.63 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=25.2
Q ss_pred cccCcCccccCCCceec-CCcCc--ccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 9 FFLCPISLAIMKDPVTV-PTGIT--YDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l-~cght--~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
.+.||++...|.-|+-. .|.|. |+....-....+.....||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999965 89987 555444444444446889999863
No 161
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.28 E-value=0.45 Score=45.38 Aligned_cols=189 Identities=14% Similarity=0.074 Sum_probs=113.2
Q ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhh--cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 98 ITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLES--AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 98 i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+...+..+. ++...|..++..|.++....- ..+.+.+ .-.+..+.+.++++. .+-+..|+.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~---------------~~E~~lA~~ 108 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGK---------------SEEQALAAR 108 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCC---------------HHHHHHHHH
Confidence 555666665 457899999999999887643 2333332 246777888888772 344555666
Q ss_pred HHHhcCCC---hhhhhhhhccccCCccHHHHHHHhcCC--HHHHHHHHHHHHHhhcccCchhhHhh-hhhHHHHHH--HH
Q 014913 175 ILCNLKIS---ELGLKSLVMGRNGTFVDSLTQIMQRGT--YESRAYAVLLLKSMLEVAEPMQLISL-RQELFVEVI--QV 246 (416)
Q Consensus 175 ~L~~l~~~---~~~~~~~i~~~~G~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv--~l 246 (416)
++..++.. .+....++. ...|.|...+..++ ...|..++.+|.-+++.......... .-..+..+. ..
T Consensus 109 ~l~Ll~ltlg~g~~~~ei~~----~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~ 184 (309)
T PF05004_consen 109 ALALLALTLGAGEDSEEIFE----ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSI 184 (309)
T ss_pred HHHHHhhhcCCCccHHHHHH----HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh
Confidence 66655543 123345554 38889999988764 55667777777777654322211111 012333222 22
Q ss_pred hccCC---------ChHHHHHHHHHHHHhCCC-Ccc-hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 247 LHDHI---------SQQASKSALEVLVNICPW-GRN-RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 247 L~~~~---------~~~~~~~A~~aL~nLs~~-~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
++.+. +..+..+|+.+..-|... +.. ..... ...+|.|+.+|.+. +.+++-.|-.+|+-|
T Consensus 185 ~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~--d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 185 LKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD--DVDVRIAAGEAIALL 255 (309)
T ss_pred cCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 33220 245777777776665443 332 22222 34799999999988 888888877777666
No 162
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0029 Score=56.08 Aligned_cols=37 Identities=35% Similarity=0.748 Sum_probs=33.5
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHc
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~ 42 (416)
+.++-+|.+|++.++|||+.+-||.|||.||.+++-.
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5566689999999999999999999999999999864
No 163
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0081 Score=60.32 Aligned_cols=73 Identities=38% Similarity=0.616 Sum_probs=64.7
Q ss_pred CCCCCcccCcCccccCCCceecC-CcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVP-TGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~-cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
.++|++|.-|++..+|+|||.++ ++-+..|+-|...+-. ..+.|.-+.+++ -+++.||..+++-|..|...+.
T Consensus 849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls--d~tDPFNRmPLt-lddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS--DGTDPFNRMPLT-LDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc--CCCCccccCCCc-hhhcCCCHHHHHHHHHHHhccc
Confidence 45999999999999999999995 7899999999888776 468899999998 8999999999999999977654
No 164
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0034 Score=59.80 Aligned_cols=42 Identities=21% Similarity=0.565 Sum_probs=35.8
Q ss_pred cccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCCC--CCCCCC
Q 014913 9 FFLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGKN--NTCPMT 51 (416)
Q Consensus 9 ~~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~~--~~CP~~ 51 (416)
-|.|||-++-=.| |+.+.|||+-++..|.+...++ . +.||-|
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng-~~sfKCPYC 380 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNG-SQSFKCPYC 380 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCC-CeeeeCCCC
Confidence 3899998876655 9999999999999999977654 5 889999
No 165
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.19 E-value=0.26 Score=45.07 Aligned_cols=212 Identities=14% Similarity=0.089 Sum_probs=131.3
Q ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhc
Q 014913 101 LLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNL 179 (416)
Q Consensus 101 lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l 179 (416)
++..| .+++.|.+|+..|.+--...++....+-. .|.+..|++=.-+--+.-...... .....-..+|+..|.-+
T Consensus 2 ~i~~L-~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt---~~~snRVcnaLaLlQ~v 77 (262)
T PF04078_consen 2 LILDL-CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLT---ARQSNRVCNALALLQCV 77 (262)
T ss_dssp HHHHT-SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT------HHHHHHHHHHHHHHHHH
T ss_pred hhHHh-cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccC---HHHHHHHHHHHHHHHHH
Confidence 45556 67889998888777655544544444444 488888775543321000000000 00123356788888899
Q ss_pred CCChhhhhhhhccccCCccHHHHHHHhcCC-----HHHHHHHHHHHHHhhcccCch-hhHhhhhhHHHHHHHHhccCCCh
Q 014913 180 KISELGLKSLVMGRNGTFVDSLTQIMQRGT-----YESRAYAVLLLKSMLEVAEPM-QLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 180 ~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
|.+++.+..++. + ...-.|-.+|+..+ ..+|-.+..+++.|...++.. .......+.||.-++.++.| +.
T Consensus 78 Ashpetr~~Fl~--a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-se 153 (262)
T PF04078_consen 78 ASHPETRMPFLK--A-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SE 153 (262)
T ss_dssp HH-TTTHHHHHH--T-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--H
T ss_pred HcChHHHHHHHH--c-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cH
Confidence 999998888887 4 36556667776532 557888999999998654422 22234558999999999999 88
Q ss_pred HHHHHHHHHHHHhCCCCcch-------HHHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 014913 254 QASKSALEVLVNICPWGRNR-------IKGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK 321 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~-------~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 321 (416)
-.|.-|...+..+-.++..- .++.. .-++..+|.-+...+ ++.+......+-..|+.++..|.++..
T Consensus 154 lSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 154 LSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888988888876555422 22211 123444444333333 788999999999999999998888765
No 166
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.13 E-value=0.039 Score=56.80 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=104.2
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch--hhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-ch
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM--QLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NR 273 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~ 273 (416)
.+..++..|++.++.+|++|+..+..++..-..+ ...+..-| -.|...|... ++++.-..+.||..+...-. .+
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee-ypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE-YPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc-cHHHHHHHHHHHHHHHHhccccc
Confidence 4556677889999999999999999998542222 22333435 3477788887 88888777777766643221 11
Q ss_pred HHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh-h---hHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHH
Q 014913 274 IKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA-E---GRAELLKHGAGLAIVSKKILRVSQVASERAVRILL 349 (416)
Q Consensus 274 ~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~-~---~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~ 349 (416)
..==-.|.+|.|..+|++. ...+++++...+..+|... + .|+-+... --|+++|.+.....++.|+..+.
T Consensus 877 m~pPi~dllPrltPILknr--heKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNR--HEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred cCCChhhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Confidence 1001147899999999998 8999999999999999743 3 24444432 24777777777788888888887
Q ss_pred HHhcCC
Q 014913 350 SISKFS 355 (416)
Q Consensus 350 ~L~~~~ 355 (416)
.++..-
T Consensus 951 ~IakaI 956 (1172)
T KOG0213|consen 951 YIAKAI 956 (1172)
T ss_pred HHHHhc
Confidence 777643
No 167
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.09 E-value=0.0084 Score=40.17 Aligned_cols=42 Identities=29% Similarity=0.586 Sum_probs=33.0
Q ss_pred cCcCccc--cCCCceecCCc-----CcccHHHHHHHHHcCCCCCCCCCC
Q 014913 11 LCPISLA--IMKDPVTVPTG-----ITYDRESIEKWLFAGKNNTCPMTK 52 (416)
Q Consensus 11 ~Cpic~~--~~~~Pv~l~cg-----ht~c~~ci~~~~~~~~~~~CP~~~ 52 (416)
.|-||++ .-.+|.+.||. +.+=+.|+.+|+...+..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4788886 55668788885 557788999999876577999985
No 168
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.08 E-value=0.16 Score=52.82 Aligned_cols=222 Identities=13% Similarity=0.099 Sum_probs=145.5
Q ss_pred hhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHH-hcCCChhhhhhhhccccCCccHHHHHHH
Q 014913 127 ETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILC-NLKISELGLKSLVMGRNGTFVDSLTQIM 205 (416)
Q Consensus 127 ~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~-~l~~~~~~~~~~i~~~~G~~i~~Lv~lL 205 (416)
..-+...++.|+...|.++.... .++..-.+..+|. .+....+.. . ..++++.+.+
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q---------------~e~akl~~~~aL~~~i~f~~~~~-------~-~v~~~~~s~~ 550 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQ---------------FEEAKLKWYHALAGKIDFPGERS-------Y-EVVKPLDSAL 550 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHh---------------chHHHHHHHHHHhhhcCCCCCch-------h-hhhhhhcchh
Confidence 34555677889999999998776 3566666666666 333222211 2 2555666665
Q ss_pred hcCCHHH-HHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHh-hCcH
Q 014913 206 QRGTYES-RAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVE-AGAV 282 (416)
Q Consensus 206 ~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~-~G~v 282 (416)
++..... .-.+..++.||++.++..+.-+...-+++.+-.++... ++..+.+++..+.||..++. ....+++ ...+
T Consensus 551 ~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l 629 (748)
T KOG4151|consen 551 HNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRL 629 (748)
T ss_pred hhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCc
Confidence 5432111 23467788889877664444343334556555566666 88999999999999998886 4455566 4566
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHH-HHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHH
Q 014913 283 SILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAE-LLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVL 361 (416)
Q Consensus 283 ~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~-i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 361 (416)
+.....+... ++...-.+++++..++...++... +.+...+...++..+.+.+..+|...+....++..... ++.
T Consensus 630 ~~w~~~~e~~--~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~--ei~ 705 (748)
T KOG4151|consen 630 KLWNLNLEVA--DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALF--EIA 705 (748)
T ss_pred hHHHHHHHhh--hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHH--HHH
Confidence 7666666665 777778888888877665555433 54445677888887887788899999888888665432 466
Q ss_pred HHHHhcChHHHHHHH
Q 014913 362 QEMLQIGVVAKLCLV 376 (416)
Q Consensus 362 ~~i~~~G~v~~L~~l 376 (416)
..+......+.+..+
T Consensus 706 ~~~~~~~~~~~l~~~ 720 (748)
T KOG4151|consen 706 EKIFETEVMELLSGL 720 (748)
T ss_pred HHhccchHHHHHHHH
Confidence 666666666655444
No 169
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.0016 Score=43.43 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=37.7
Q ss_pred ccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|.||.+--.|.|.--|||. .|..|=.+.|... +..||.|+.+++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~-~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL-HGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc-CCcCcchhhHHH
Confidence 369999998888888899986 6888877777653 789999998875
No 170
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.06 E-value=0.65 Score=46.89 Aligned_cols=288 Identities=16% Similarity=0.146 Sum_probs=164.7
Q ss_pred HHHHHHHHHHh-cCc-HHHHHHHHHHHHHHhcChhhhhHHhhcCcH-HHHH-HHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 96 AQITKLLNEAA-KSP-QMQIKCLKKLRSIAAENETNKRCLESAGAV-EFLA-SFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i-~~Lv-~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+-+..++.... ..| ..+++++..+...+.... -...+...+.| -.++ .-++.+ ++..++-.
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~-Pe~li~~sN~il~aiv~ga~k~e--------------t~~avRLa 197 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA-PEDLIQMSNVILFAIVMGALKNE--------------TTSAVRLA 197 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccC-HHHHHHHhhHHHHHHHHhhcccC--------------chHHHHHH
Confidence 33444455543 234 777889999999887432 22333333332 2333 223333 25678889
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhccc-CchhhHhhhhhHHHHHHHHhccC
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVA-EPMQLISLRQELFVEVIQVLHDH 250 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~ 250 (416)
|+.+|.+-...-.++-.--.+.. -.++.+++.-+.++.+++..|...|..+..-. +.-. ...+.-....+.+.+++.
T Consensus 198 aL~aL~dsl~fv~~nf~~E~erN-y~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~-~ymE~aL~alt~~~mks~ 275 (858)
T COG5215 198 ALKALMDSLMFVQGNFCYEEERN-YFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-SYMENALAALTGRFMKSQ 275 (858)
T ss_pred HHHHHHHHHHHHHHhhcchhhhc-hhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCc
Confidence 99999872211111111111112 25666677778889999999999988876431 1122 223323444555667787
Q ss_pred CChHHHHHHHHHHHHhCCCC-c--------------ch--HHHHhhCcHHHHHHHhhccc-----chhhhHHHHHHHHHH
Q 014913 251 ISQQASKSALEVLVNICPWG-R--------------NR--IKGVEAGAVSILIDLLLDSS-----LERRASEMILTVLDL 308 (416)
Q Consensus 251 ~~~~~~~~A~~aL~nLs~~~-~--------------n~--~~i~~~G~v~~Lv~lL~~~~-----~~~~~~~~a~~~L~~ 308 (416)
+.++...|..-...+|... + |. ....-+.++|.|+.||.... ++=.....|..+|.-
T Consensus 276 -nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLql 354 (858)
T COG5215 276 -NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQL 354 (858)
T ss_pred -chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHH
Confidence 7788888877665555422 1 11 11122458999999997631 111234445555554
Q ss_pred HcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHH
Q 014913 309 LCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDK 388 (416)
Q Consensus 309 La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~ 388 (416)
-+..-.+ .+++ ..+..+-+-+.+.+...++.|+.++..+-.+... ..+..++ ..++|.+...+. +..-.+|+.
T Consensus 355 faq~~gd--~i~~--pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~-~~lT~~V-~qalp~i~n~m~-D~~l~vk~t 427 (858)
T COG5215 355 FAQLKGD--KIMR--PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE-DCLTKIV-PQALPGIENEMS-DSCLWVKST 427 (858)
T ss_pred HHHHhhh--HhHH--HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccH-HHHHhhH-HhhhHHHHHhcc-cceeehhhH
Confidence 4432111 1222 1222222233444557899999999998876542 3444433 357788877775 457789999
Q ss_pred HHHHHHHHHHhcc--CCCCCCc
Q 014913 389 AREVLKLHARAWK--NSPCVPE 408 (416)
Q Consensus 389 A~~ll~~l~~~~~--~~~~~~~ 408 (416)
+++.+..++.|.. .+||.-.
T Consensus 428 tAwc~g~iad~va~~i~p~~Hl 449 (858)
T COG5215 428 TAWCFGAIADHVAMIISPCGHL 449 (858)
T ss_pred HHHHHHHHHHHHHHhcCccccc
Confidence 9999999999975 5798543
No 171
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.05 E-value=0.0066 Score=43.97 Aligned_cols=44 Identities=25% Similarity=0.502 Sum_probs=34.3
Q ss_pred cCcCccccCCC----ceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKD----PVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~----Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.||-|+--|.. ||.- .|.|.|=..||.+|++. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh--CCCCCCCCceeE
Confidence 56666654422 5555 89999999999999987 679999998765
No 172
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.03 E-value=0.6 Score=49.77 Aligned_cols=264 Identities=16% Similarity=0.099 Sum_probs=154.8
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhh--cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh-
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLES--AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL- 184 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~- 184 (416)
+...+..++.-|......++ -+.|.. .-..|+++...... -+++-.+|+.+...+..---
T Consensus 491 ss~~ki~~L~fl~~~L~s~~--p~~fhp~~~~Ls~~v~~aV~d~---------------fyKisaEAL~v~~~lvkvirp 553 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHP--PEVFHPHLSALSPPVVAAVGDP---------------FYKISAEALLVCQQLVKVIRP 553 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCC--hhhcccchhhhhhHHHHHhcCc---------------hHhhhHHHHHHHHHHHHHhcc
Confidence 35777888888888665432 222221 12333333333333 36777777777666552100
Q ss_pred -------hhhhhhccccCCccHHHHHHHhc--CCHHHHHHHHHHHHHhhccc-CchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 185 -------GLKSLVMGRNGTFVDSLTQIMQR--GTYESRAYAVLLLKSMLEVA-EPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 185 -------~~~~~i~~~~G~~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
+-...++ ..+...++.|.. .+.++|+.|..+++.+.... +.-.. .-...++.|++-|+++ -
T Consensus 554 l~~~~~~d~~~~v~----~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~--eL~~~L~il~eRl~nE---i 624 (1233)
T KOG1824|consen 554 LQPPSSFDASPYVK----TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGN--ELPRTLPILLERLGNE---I 624 (1233)
T ss_pred cCCCccCCCChhHH----HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHhch---h
Confidence 0011222 134445556654 47899999999999775432 22221 1234777777777755 7
Q ss_pred HHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh--hHHHHHhcCCchHHHH
Q 014913 255 ASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE--GRAELLKHGAGLAIVS 330 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~--~~~~i~~~~~~v~~Lv 330 (416)
++-.|++|+.-++..+- +...+. ..+++.|...++.. ....+...+.++-.|..+-. ....+.+ -.+..+-
T Consensus 625 TRl~AvkAlt~Ia~S~l~i~l~~~l-~~il~~l~~flrK~--~r~lr~~~l~a~~~L~~~~~~~~~~~~~e--~vL~el~ 699 (1233)
T KOG1824|consen 625 TRLTAVKALTLIAMSPLDIDLSPVL-TEILPELASFLRKN--QRALRLATLTALDKLVKNYSDSIPAELLE--AVLVELP 699 (1233)
T ss_pred HHHHHHHHHHHHHhccceeehhhhH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHhh
Confidence 88899999999887664 333333 34788899999876 66677777777777655321 1112211 1112222
Q ss_pred HHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--hccCCCCCCc
Q 014913 331 KKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR--AWKNSPCVPE 408 (416)
Q Consensus 331 ~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~--~~~~~~~~~~ 408 (416)
.++...+....+.|+..|..+...... ...-+..-.+..++.++++ +-.+..|...+-.+.. .+...|++++
T Consensus 700 ~Lisesdlhvt~~a~~~L~tl~~~~ps---~l~~~~~~iL~~ii~ll~S---pllqg~al~~~l~~f~alV~t~~~~l~y 773 (1233)
T KOG1824|consen 700 PLISESDLHVTQLAVAFLTTLAIIQPS---SLLKISNPILDEIIRLLRS---PLLQGGALSALLLFFQALVITKEPDLDY 773 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcccH---HHHHHhhhhHHHHHHHhhC---ccccchHHHHHHHHHHHHHhcCCCCccH
Confidence 222222347889999999998887663 3445567889999999986 3344444443333333 4567788876
No 173
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.01 E-value=0.049 Score=42.33 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccc
Q 014913 215 YAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSL 294 (416)
Q Consensus 215 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~ 294 (416)
.+...|..++..-........ .-.+++++..+.+. +..+|..|+.+|+|++........-.-..+++.|.+++.+.
T Consensus 5 ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~-- 80 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP-- 80 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 344455555432222222222 25899999999998 99999999999999986554322212256888899999887
Q ss_pred hhhhHHHHHHHHHHHc
Q 014913 295 ERRASEMILTVLDLLC 310 (416)
Q Consensus 295 ~~~~~~~a~~~L~~La 310 (416)
++.++. ++..|-+|-
T Consensus 81 d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 DENVRS-AAELLDRLL 95 (97)
T ss_pred chhHHH-HHHHHHHHh
Confidence 666554 447776664
No 174
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.01 E-value=0.006 Score=54.79 Aligned_cols=46 Identities=30% Similarity=0.352 Sum_probs=38.6
Q ss_pred cccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 9 FFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
+++||++......||+. .|||.|.|..|..++-......||+-+-+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 47999999999999976 89999999999999864335679985543
No 175
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.27 Score=51.88 Aligned_cols=127 Identities=16% Similarity=0.103 Sum_probs=66.9
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQ 245 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 245 (416)
.++++-.--=|.+.+...++ ..+. ++..+.+=|+++|+.+|-.|.+++..+=. . .+. .-.++++.+
T Consensus 69 ~ElKrL~ylYl~~yak~~P~--~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~----~-el~--~~~~~~ik~ 134 (757)
T COG5096 69 VELKRLLYLYLERYAKLKPE--LALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRV----K-ELL--GNIIDPIKK 134 (757)
T ss_pred HHHHHHHHHHHHHHhccCHH--HHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcCh----H-HHH--HHHHHHHHH
Confidence 45555444444444443331 1221 44555555566666666666555554411 1 111 135666666
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 246 VLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 246 lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
++.++ +..+|+.|+-|+.++=.-+ +....+.|.+..+..++.+. ++.++..|+.+|..+..
T Consensus 135 ~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 135 LLTDP-HAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADS--DPIVIANALASLAEIDP 195 (757)
T ss_pred HccCC-cHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCC--CchHHHHHHHHHHHhch
Confidence 66666 6666666666666654322 22344556666666666655 66666666666666644
No 176
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.98 E-value=0.052 Score=47.80 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=91.6
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhcccc-------------CCccHHHHHHHhc------CCHHHHHHHHHHHHHhhcc
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRN-------------GTFVDSLTQIMQR------GTYESRAYAVLLLKSMLEV 226 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~-------------G~~i~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~ 226 (416)
...-..++.+|.|++..++....++.... |..+..|++++.. ...+-..+.+.++.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 45677788999999998877654443111 1267778887765 2355678899999999999
Q ss_pred cCchhhHhhhhhH---HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh---hCcHHHHHHHhhc
Q 014913 227 AEPMQLISLRQEL---FVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVE---AGAVSILIDLLLD 291 (416)
Q Consensus 227 ~~~~~~~~~~~g~---i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~---~G~v~~Lv~lL~~ 291 (416)
.+.+..+...... |..|+...++. +..-+.-++.+|.|+|...+.+..+.. .+++|.|+--|..
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 8888777654433 56666666777 888899999999999999988877766 3566776666653
No 177
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.0047 Score=58.92 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=41.0
Q ss_pred CCcccCcCccccCCCce-----e---cCCcCcccHHHHHHHHHcCC-----CCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPV-----T---VPTGITYDRESIEKWLFAGK-----NNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv-----~---l~cght~c~~ci~~~~~~~~-----~~~CP~~~~~l~ 56 (416)
-.+..|-||++...+++ . .+|.|+||..||..|-...+ .+.||.|+....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 45789999999999987 3 47999999999999975432 478999987665
No 178
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.88 E-value=0.006 Score=40.22 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=21.5
Q ss_pred CcCccccCCCc--eec--CCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 12 CPISLAIMKDP--VTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 12 Cpic~~~~~~P--v~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
||+|.+.|..- -.. +||+..|+.|..+..... ...||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~-~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE-GGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS--SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc-CCCCCCCCCCC
Confidence 78998888221 122 689999999998877643 67999999876
No 179
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0058 Score=55.76 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=37.5
Q ss_pred cCcCcc-ccCCCce----ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISL-AIMKDPV----TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~-~~~~~Pv----~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.||+|+ ..+..|- +-+|||+.|.+|..+.|..+ ...||.|+..+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g-~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG-PAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC-CCCCCcccchhh
Confidence 499998 5666664 23899999999999999875 889999998886
No 180
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.76 E-value=0.052 Score=54.78 Aligned_cols=148 Identities=13% Similarity=0.125 Sum_probs=104.6
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc--hhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcc--
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP--MQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRN-- 272 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n-- 272 (416)
.++.++.+|++..+.+|++|+.....|+..-.+ ........| -.|..-|.+. ++++.-..+.|++.+.....-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGED-YPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcc-cHHHHHHHHHHHHHHhhhhcccc
Confidence 567778899999999999999999888743221 122223334 3466667777 888888878877776543332
Q ss_pred -hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh----HHHHHhcCCchHHHHHHHHhcChhhhHHHHHH
Q 014913 273 -RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG----RAELLKHGAGLAIVSKKILRVSQVASERAVRI 347 (416)
Q Consensus 273 -~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~----~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~ 347 (416)
+-.+ .|.+|.|..+|++. ...++++....+.-++..... |+-+... --|+..|.+.+.+.++.|...
T Consensus 682 mqpPi--~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~t 753 (975)
T COG5181 682 MQPPI--SGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATET 753 (975)
T ss_pred cCCch--hhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhh
Confidence 2222 58999999999998 889999999999999874322 3434332 247777777788899999988
Q ss_pred HHHHhcCC
Q 014913 348 LLSISKFS 355 (416)
Q Consensus 348 L~~L~~~~ 355 (416)
+..++..-
T Consensus 754 fG~Is~ai 761 (975)
T COG5181 754 FGCISRAI 761 (975)
T ss_pred hhhHHhhc
Confidence 88777643
No 181
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.0088 Score=53.31 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=41.9
Q ss_pred CCcccCcCccccCCCce----ecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 7 PTFFLCPISLAIMKDPV----TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv----~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
...|.|||.+-.|..-. .-+|||+|..+.+.+.- ...|++|++.+...+-++.|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~dvIvlN 166 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDDVIVLN 166 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccCeEeeC
Confidence 45699999999999865 33999999998887753 45899999999844444444
No 182
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.70 E-value=0.5 Score=41.19 Aligned_cols=110 Identities=18% Similarity=0.184 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQ 245 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 245 (416)
+.++.+++.+++.|+..-+ .++. + .++.+...|+++++.+|..|..+|..|...+--+ .....+..++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~---~~ve--~--~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP---NLVE--P--YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc---HHHH--h--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 6789999999999886543 4554 3 8999999999999999999999999998653222 22223477788
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhc
Q 014913 246 VLHDHISQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLD 291 (416)
Q Consensus 246 lL~~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~ 291 (416)
++.+. +++.+..|...+..+.... ++ .+ ...++.++..|..
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~~~~~--~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKKRNPN--II--YNNFPELISSLNN 112 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHhccch--HH--HHHHHHHHHHHhC
Confidence 88887 9999999999999988752 22 12 2245555555554
No 183
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.0072 Score=56.36 Aligned_cols=48 Identities=23% Similarity=0.247 Sum_probs=41.2
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++-.||||----...|..||||.-|+.||.+.+.+ .+.|-.|+....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN--CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc--CCeeeEecceee
Confidence 377899999988888889999999999999999886 567888876655
No 184
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.54 E-value=0.049 Score=43.71 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=58.4
Q ss_pred CccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 196 TFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 196 ~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
..+..|+++|.. .++.+..-|+.=|+.++......+.++...|+-..++.++.++ +++++..|+.|+..|
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 578899999954 4777888899999999988777788888889999999999998 999999999999875
No 185
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=3.4 Score=43.53 Aligned_cols=223 Identities=11% Similarity=0.056 Sum_probs=120.7
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhH--------Hhhc------CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRC--------LESA------GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~--------i~~~------G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.++-+|.+|+.+..++-+..++.-+. +.+. +++..+.++.+.+.+.- ..-.++...=
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l---------~~fr~l~~~l 224 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL---------SYFRDLVPSL 224 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH---------HHHHHHHHHH
Confidence 57899999999998888777644333 3321 35555666655431000 0001233444
Q ss_pred HHHHHhcCCChhhhhhhhccccCCc--------cHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhh--hhHHHH
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTF--------VDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLR--QELFVE 242 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~--------i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~ 242 (416)
+..|.++..+.... .. +..| . +=.++.+|-.++.+..+....+|..++.+.+..+.++.. -.++..
T Consensus 225 V~iLk~l~~~~ysp-ey--dv~g-i~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 225 VKILKQLTNSGYSP-EY--DVHG-ISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHhcCCCCC-cc--CccC-CCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 55666666443211 10 0011 1 123345566778888888888888888776655444321 135555
Q ss_pred HHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHH----------hhCcH----HHHHHHhhcccchhhhHHHHHHHHH
Q 014913 243 VIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGV----------EAGAV----SILIDLLLDSSLERRASEMILTVLD 307 (416)
Q Consensus 243 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~----------~~G~v----~~Lv~lL~~~~~~~~~~~~a~~~L~ 307 (416)
+..+..+ ..++..|+.+|...-.+.+ |.+.+. +..+| ..+++-|++. |..++..|+..+.
T Consensus 301 I~~I~~~---~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp--D~SIkrralELs~ 375 (866)
T KOG1062|consen 301 IMDIRSN---SGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP--DVSIKRRALELSY 375 (866)
T ss_pred HHhccCC---chHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHH
Confidence 5555543 4778888888887655444 443330 01111 2244555555 6667777777776
Q ss_pred HHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcC
Q 014913 308 LLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKF 354 (416)
Q Consensus 308 ~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~ 354 (416)
.|.... |-+.++. -|+.+|.+.++..+...+.-+..++..
T Consensus 376 ~lvn~~-Nv~~mv~------eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 376 ALVNES-NVRVMVK------ELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHhccc-cHHHHHH------HHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 665543 2222322 355555555666666666666665543
No 186
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.50 E-value=1 Score=39.20 Aligned_cols=112 Identities=16% Similarity=0.274 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK 187 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 187 (416)
+|.+|..++.++..++...+..-+ ..+|.+...|.++ ++.+++.|+.+|..|...+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~---------------~~~VR~~al~~Ls~Li~~d---- 56 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE---------------DPLVRKTALLVLSHLILED---- 56 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC---------------CHHHHHHHHHHHHHHHHcC----
Confidence 467899999999999987663222 3478888999887 6899999999999987543
Q ss_pred hhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc
Q 014913 188 SLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD 249 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 249 (416)
++.- .|..+..++.+|...+++++..|...+..+...... ..+ . ..++.++..|.+
T Consensus 57 -~ik~-k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~-~~i-~--~~~~e~i~~l~~ 112 (178)
T PF12717_consen 57 -MIKV-KGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNP-NII-Y--NNFPELISSLNN 112 (178)
T ss_pred -ceee-hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccc-hHH-H--HHHHHHHHHHhC
Confidence 2321 222448888999999999999999999999865222 222 2 345555555553
No 187
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.50 E-value=0.46 Score=47.63 Aligned_cols=167 Identities=12% Similarity=0.109 Sum_probs=111.6
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh----HHHHHHHHHHHHhCCCCcc
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ----QASKSALEVLVNICPWGRN 272 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~----~~~~~A~~aL~nLs~~~~n 272 (416)
....+.+++.+|+...+..|...|..++.+.......... .++..|..+..++ +. +.....+.++..|-.+.-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~-~gl~~L~~liedg-~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRC-SGLELLFSLIEDG-RVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhc-chHHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHhhcee
Confidence 3457788899999988888999999998776666665555 6789999999987 43 4445555555554333321
Q ss_pred hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHh
Q 014913 273 RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSIS 352 (416)
Q Consensus 273 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~ 352 (416)
-...+....|-..+.+.....-+..+-..|+..|.++..+.......+..+--+..|+.++..++...+..|...+..+-
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11122222333333333222114567789999999998876654444444788999999998888888888998888887
Q ss_pred cCCCChHHHHHHHh
Q 014913 353 KFSATNSVLQEMLQ 366 (416)
Q Consensus 353 ~~~~~~~~~~~i~~ 366 (416)
....+. -|.+|.+
T Consensus 242 ~~a~~~-~R~~~~~ 254 (713)
T KOG2999|consen 242 RKAPDD-KRFEMAK 254 (713)
T ss_pred hhCChH-HHHHHHH
Confidence 766653 3444433
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.33 Score=52.18 Aligned_cols=201 Identities=16% Similarity=0.124 Sum_probs=142.7
Q ss_pred cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc-C-CChHHHHHHHHHHHHhCCCCc
Q 014913 194 NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD-H-ISQQASKSALEVLVNICPWGR 271 (416)
Q Consensus 194 ~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~-~~~~~~~~A~~aL~nLs~~~~ 271 (416)
-| .+|-+++||++...|+|.--+.+=..+-..+.+++.-.+..+|-.-.+..|.. + .+++-+.-|+-.|..++.+-.
T Consensus 511 VG-IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~ 589 (1387)
T KOG1517|consen 511 VG-IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK 589 (1387)
T ss_pred cc-hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence 64 99999999999999999998888888777767776666666677777777775 3 245778888888999887654
Q ss_pred -chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHH
Q 014913 272 -NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILL 349 (416)
Q Consensus 272 -n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~ 349 (416)
.+....+.+.|..-+..|.+++ .+-++.-++-.|..|=. .++.|-.=++ .++...|...|....++++-.|+-+|.
T Consensus 590 lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 590 LGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred hhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7777788889998889998852 46677778888888855 4555555555 688899998666667799999999999
Q ss_pred HHhcCC-----CChHHHHH--------HHhcChH----HHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 350 SISKFS-----ATNSVLQE--------MLQIGVV----AKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 350 ~L~~~~-----~~~~~~~~--------i~~~G~v----~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+-... +....+++ +.-...+ ..|+.+++ ++++-.|..-+..|.....
T Consensus 668 tfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs-dgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 668 TFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS-DGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred HHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh-ccchHHHHHHHHHHHHHHH
Confidence 877753 11112211 1112222 25556664 4688777766666655544
No 189
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.46 E-value=0.074 Score=41.32 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=51.4
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
..+++++..+..++..+|..|+.+|.+++...... .+..-......|.+++.+. ++.++..| ..|-+|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~D~-d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSADP-DENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC-chhHHHHH-HHHHHH
Confidence 38999999999999999999999999999764332 2223346888899998877 76655544 666554
No 190
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.6 Score=47.87 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=106.9
Q ss_pred hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHH
Q 014913 186 LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVN 265 (416)
Q Consensus 186 ~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 265 (416)
...+|. .| +=..+|.=|...-.++|.+|+..++.|+..... .. ..++..||+++.++ ...++..|..+|..
T Consensus 366 ~~siI~--sG-ACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA--~~aldfLvDMfNDE-~~~VRL~ai~aL~~ 436 (823)
T KOG2259|consen 366 EESIIP--SG-ACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FA--VRALDFLVDMFNDE-IEVVRLKAIFALTM 436 (823)
T ss_pred cccccc--cc-ccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cH--HHHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence 345666 54 777888888878899999999999999865222 22 24789999999988 88999999999999
Q ss_pred hCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHH
Q 014913 266 ICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAV 345 (416)
Q Consensus 266 Ls~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~ 345 (416)
++.+- .++..-++.+.+.|.+. +.++++..-..|.+.=..+-+...+ ++..|.+.|.. -+..+....
T Consensus 437 Is~~l-----~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k-yPqDrd~i~ 503 (823)
T KOG2259|consen 437 ISVHL-----AIREEQLRQILESLEDR--SVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK-YPQDRDEIL 503 (823)
T ss_pred HHHHh-----eecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh-CCCCcHHHH
Confidence 98862 33445678888999887 7888888877777664333222222 23334443322 345667778
Q ss_pred HHHHHHhcCCCC
Q 014913 346 RILLSISKFSAT 357 (416)
Q Consensus 346 ~~L~~L~~~~~~ 357 (416)
.++..+..+++.
T Consensus 504 ~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 504 RCMGRIGQNHRR 515 (823)
T ss_pred HHHHHHhccChh
Confidence 888888887764
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.29 E-value=0.26 Score=53.69 Aligned_cols=232 Identities=13% Similarity=0.098 Sum_probs=143.9
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHHh---cChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 98 ITKLLNEAAK-SPQMQIKCLKKLRSIAA---ENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 98 i~~lv~~l~~-~~~~~~~Al~~L~~l~~---~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+|.++..+.+ ...+|..|+..|..+.. +-+..-..|.-.-..|-|-.++.+.. ...++-.-+
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~--------------~~~vRiayA 529 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSS--------------AQIVRIAYA 529 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCc--------------cceehhhHH
Confidence 3444555533 34888888888877664 22223333455566777888877641 122332222
Q ss_pred HHHHhcCCC------------------hh------------hhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHh
Q 014913 174 SILCNLKIS------------------EL------------GLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSM 223 (416)
Q Consensus 174 ~~L~~l~~~------------------~~------------~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l 223 (416)
..|..||.. +. +..+++. .+-+.++.+|..+++-++..-...|..|
T Consensus 530 snla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~----~V~~~v~sLlsd~~~~Vkr~Lle~i~~L 605 (1431)
T KOG1240|consen 530 SNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH----TVEQMVSSLLSDSPPIVKRALLESIIPL 605 (1431)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH----HHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 233322211 11 1112221 1445566677777778888888888888
Q ss_pred hcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHH
Q 014913 224 LEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMIL 303 (416)
Q Consensus 224 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~ 303 (416)
|.+....+ .+.=.++.|+..|.+. ++.+|-+--..|.-+|..-.- +-++++.+|.|.+-|.++ .+-+...|+
T Consensus 606 C~FFGk~k---sND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~--EE~Viv~aL 677 (1431)
T KOG1240|consen 606 CVFFGKEK---SNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDG--EEAVIVSAL 677 (1431)
T ss_pred HHHhhhcc---cccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCc--chhhHHHHH
Confidence 86533211 2224778899999888 888887777666655542222 225678899999999998 889999999
Q ss_pred HHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCC
Q 014913 304 TVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 304 ~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
++|..|+...--++..+. ..+....-+|...+..++..++.++..+++.-.+
T Consensus 678 ~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 678 GSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 999999987655544443 2233333334456778999999999998876543
No 192
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=1 Score=49.11 Aligned_cols=220 Identities=18% Similarity=0.187 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccc-cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGR-NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~-~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
+..+|..+-++|..++..++. ...+.+. . .....|.+-+++.+.-.+.....+|..|-.....-...... -.|+-+
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~-~~~~~q~i~-~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~Ev 743 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSG-EGLVEQRID-DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEV 743 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCch-hhHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHH
Confidence 578899999999988877432 2222210 1 24445555555556666677777777766443322222222 356666
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhC------cHHHHHHHhhccc--chhhhHHHHHHHHHHHcCChhh
Q 014913 244 IQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAG------AVSILIDLLLDSS--LERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G------~v~~Lv~lL~~~~--~~~~~~~~a~~~L~~La~~~~~ 315 (416)
+-.+++. +...++.|-.+|..++. .....+.| .|...+.+|..+- +....+..-+-++..+...
T Consensus 744 IL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--- 815 (1176)
T KOG1248|consen 744 ILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE--- 815 (1176)
T ss_pred HHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---
Confidence 6666776 89999999999999873 11112222 4444455554331 0222222213333333322
Q ss_pred HHHHHhc---CCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHH
Q 014913 316 RAELLKH---GAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREV 392 (416)
Q Consensus 316 ~~~i~~~---~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~l 392 (416)
...+..+ .+.+..+.-+|.+.+......|+..+..++...+. ..-.-...-.++.++.+++. .+-..|.+..-+
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe--~~l~~~~~~LL~sll~ls~d-~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE--ECLSPHLEELLPSLLALSHD-HKIKVRKKVRLL 892 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH--HHHhhhHHHHHHHHHHHHHh-hhHHHHHHHHHH
Confidence 1122220 12333344444556778999999999998887664 22222223467778777754 467778888888
Q ss_pred HHHHHH
Q 014913 393 LKLHAR 398 (416)
Q Consensus 393 l~~l~~ 398 (416)
|..|-+
T Consensus 893 lekLir 898 (1176)
T KOG1248|consen 893 LEKLIR 898 (1176)
T ss_pred HHHHHH
Confidence 877665
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.26 E-value=3.6 Score=44.27 Aligned_cols=245 Identities=18% Similarity=0.126 Sum_probs=134.0
Q ss_pred HHHHHHHHHh-----cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 97 QITKLLNEAA-----KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 97 ~i~~lv~~l~-----~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
++..++..+. +........+-.|...+-.-+.||+.+.+.|+|+.|+..|...-.... +.....+-+.
T Consensus 118 GL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~-------~~~~~~i~E~ 190 (802)
T PF13764_consen 118 GLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQ-------NSSQAEIAEQ 190 (802)
T ss_pred CHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCcc-------ccccchHHHH
Confidence 4455566664 123344445555555555557899999999999999999964311000 0001445555
Q ss_pred HHHHHHhcCCChhhh-----hhhhc------cccCCccHHHHHHHhcC----CHHHHHHHHHHHHHhhcccCchhhHhhh
Q 014913 172 ALSILCNLKISELGL-----KSLVM------GRNGTFVDSLTQIMQRG----TYESRAYAVLLLKSMLEVAEPMQLISLR 236 (416)
Q Consensus 172 A~~~L~~l~~~~~~~-----~~~i~------~~~G~~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 236 (416)
-+.++--+....... ..... +.. .-+..|++.+.+. ++.+.+..+.+|-.|+..+.......++
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~-~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDK-EQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccH-HHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 555444433221110 00001 001 1366677777653 6888999999999999876655544443
Q ss_pred hhHHHHHHHHhccCC-ChHHHHHHHHHHHHhCC----CC---cchHHHHhhCcHHHHHHHhhccc------chh------
Q 014913 237 QELFVEVIQVLHDHI-SQQASKSALEVLVNICP----WG---RNRIKGVEAGAVSILIDLLLDSS------LER------ 296 (416)
Q Consensus 237 ~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~nLs~----~~---~n~~~i~~~G~v~~Lv~lL~~~~------~~~------ 296 (416)
- ..+.+++=+-+. ...--+..+..+..++. +. .-|..+++.|++...++.|...- .++
T Consensus 270 -~-F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 270 -H-FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred -H-HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 1 233333221110 01111222444444432 22 25788999999999998886531 112
Q ss_pred --hhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC--hhhhHHHHHHHHHHhc
Q 014913 297 --RASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS--QVASERAVRILLSISK 353 (416)
Q Consensus 297 --~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~--~~~~~~a~~~L~~L~~ 353 (416)
.....++..|.-|+.+...-+.++. .++++. +..|...+ ..+-..|-.+|-.|+.
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~~~-~~~l~~-lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLLIA-EQLLPL-LHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHHHH-hhHHHH-HHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2344688889999987665555555 466744 44466554 2344455555555665
No 194
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.24 E-value=0.24 Score=43.34 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCh-hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAKSPQMQIKCLKKLRSIAAENE-TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.....++..+.+. ....+.+..|+...+..+ ..-+.+.+.||+..|+.+|..-..... . ...+...+..++.
T Consensus 66 ~~p~~~i~~L~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~--~----~~~~~~~~~~~l~ 138 (187)
T PF06371_consen 66 SSPEWYIKKLKSR-PSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKE--K----SEEDIDIEHECLR 138 (187)
T ss_dssp HHHHHHHHHHTTT---HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHC--T----CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcc-CccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhh--h----cchhHHHHHHHHH
Confidence 5566788888433 333366777777666543 456778889999999999975321000 0 0013578888999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSML 224 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 224 (416)
+|..+..+......++. .+ +++..|+..|.+.+..++..+..+|..+|
T Consensus 139 Clkal~n~~~G~~~v~~-~~-~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 139 CLKALMNTKYGLEAVLS-HP-DSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHTSSHHHHHHHHC-SS-SHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHc-Cc-HHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999988877766766 67 59999999999999999999999998876
No 195
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.11 E-value=0.0099 Score=56.36 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=39.8
Q ss_pred cCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|-||-+-=+|=-+=+|||-.|-.|+..|..+.+..+||.|+-+++
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 6999999888866669999999999999986644689999998887
No 196
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.11 E-value=0.12 Score=45.52 Aligned_cols=119 Identities=11% Similarity=0.060 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhcccCchhhHh---------------hhhhHHHHHHHHhccC-----CChHHHHHHHHHHHHhCCCC
Q 014913 211 ESRAYAVLLLKSMLEVAEPMQLIS---------------LRQELFVEVIQVLHDH-----ISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 211 ~~~~~a~~~L~~l~~~~~~~~~~~---------------~~~g~i~~Lv~lL~~~-----~~~~~~~~A~~aL~nLs~~~ 270 (416)
.....++.+|.||+..+.....+. .....+..|+..+..| ....--...+..|.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 344556777777776555444221 1234788888887652 13355667899999999999
Q ss_pred cchHHHHhh--Cc--HHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcC--CchHHHHH
Q 014913 271 RNRIKGVEA--GA--VSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHG--AGLAIVSK 331 (416)
Q Consensus 271 ~n~~~i~~~--G~--v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~--~~v~~Lv~ 331 (416)
+.|..+.+. +. +..|+..+... +..-+.-++++|.|+|...+....+..+. +.+|.|+-
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHh
Confidence 999999873 34 56666666665 56667889999999999988888777732 34444443
No 197
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.09 E-value=1.5 Score=41.70 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=113.5
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhH--------hhh
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLI--------SLR 236 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~--------~~~ 236 (416)
++.+++.|+.+|+-.+.-+. +... ..++.+...++.++.+++..|..+|..+.........- ...
T Consensus 40 ~~~vR~~al~cLGl~~Lld~---~~a~----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 40 DPAVRELALKCLGLCCLLDK---ELAK----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred CHHHHHHHHHHHHHHHHhCh---HHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 57999999999998776553 3333 37788888888889999999999999987543311111 112
Q ss_pred hhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc--chhhhHHHHHHHHHHHcCChh
Q 014913 237 QELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS--LERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 237 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~--~~~~~~~~a~~~L~~La~~~~ 314 (416)
...+..+.+.+.+. +++++..|+..+..|-..+.... ...++..|+-+--++. .+..++..-...+-..+....
T Consensus 113 ~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 113 KSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 35778888899988 89999999999999866554333 2344555555554432 134566656666667776544
Q ss_pred hHHHHHhcCCchHHHHHHHHhcCh----h---hhHHHHHHHHHHhcC
Q 014913 315 GRAELLKHGAGLAIVSKKILRVSQ----V---ASERAVRILLSISKF 354 (416)
Q Consensus 315 ~~~~i~~~~~~v~~Lv~~l~~~~~----~---~~~~a~~~L~~L~~~ 354 (416)
..+..+. ...++.+-.+...... . .-...+..+..++..
T Consensus 189 ~~Q~~l~-~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 189 ENQERLA-EAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHH-HHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 4444444 3666776653332221 0 133455555555543
No 198
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=3.4 Score=43.00 Aligned_cols=250 Identities=15% Similarity=0.118 Sum_probs=139.6
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh-hhh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL-GLK 187 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~-~~~ 187 (416)
+-++.+|+-+|..+-+.+++ .+..-+....++.+|...+ ..+...+...+-.|+...+ ..+
T Consensus 162 ~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~---------------~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 162 DYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQH---------------MGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred HHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccc---------------cceeeehHHHHHHHHHcCCHHHh
Confidence 56777777777777776552 3333467788888887763 4455555555555554322 222
Q ss_pred hhhccccCCccHHHHHHHhc-------------CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC-Ch
Q 014913 188 SLVMGRNGTFVDSLTQIMQR-------------GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI-SQ 253 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~ 253 (416)
..+. -++..|-.+... +.+=++.+.+.+|.++=...+........ .++..+....++.. +.
T Consensus 224 ~~~~----~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~-evl~~iLnk~~~~~~~k 298 (938)
T KOG1077|consen 224 TCLP----LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN-EVLERILNKAQEPPKSK 298 (938)
T ss_pred hhHH----HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH-HHHHHHHhccccCcccc
Confidence 2211 122222222211 23556667777777764333333222221 34455554444220 11
Q ss_pred -----HHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchH
Q 014913 254 -----QASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLA 327 (416)
Q Consensus 254 -----~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~ 327 (416)
.++.+.+.-..+|..+-+ ....+++ ++..|-++|... ...++--|+..+..|+.+.....++..+ ..
T Consensus 299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r--E~NiRYLaLEsm~~L~ss~~s~davK~h---~d 371 (938)
T KOG1077|consen 299 KVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR--ETNIRYLALESMCKLASSEFSIDAVKKH---QD 371 (938)
T ss_pred chHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc--cccchhhhHHHHHHHHhccchHHHHHHH---HH
Confidence 122222333445555444 4444444 578888999887 7889999999999999887666666664 45
Q ss_pred HHHHHHHhc-ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 328 IVSKKILRV-SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 328 ~Lv~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.++..|... +..+++.|+..|+.+|.... ...| |.-|+.-|.+ -+...|+.-+-=+..|.+
T Consensus 372 ~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~I-----V~elLqYL~t-Ad~sireeivlKvAILaE 433 (938)
T KOG1077|consen 372 TIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQI-----VAELLQYLET-ADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhchhh----HHHH-----HHHHHHHHhh-cchHHHHHHHHHHHHHHH
Confidence 566655533 45889999999999997543 3332 2334444443 256666655444444444
No 199
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.02 E-value=5.4 Score=41.67 Aligned_cols=239 Identities=10% Similarity=0.126 Sum_probs=140.8
Q ss_pred HHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccc
Q 014913 114 KCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGR 193 (416)
Q Consensus 114 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~ 193 (416)
-|+..|..+...+= .|+. -+-++.+|+++ -+=++..|+.+|..+..-. .+.+.
T Consensus 128 iAL~GLS~fvTpdL-ARDL------a~Dv~tLL~ss---------------kpYvRKkAIl~lykvFLkY---PeAlr-- 180 (877)
T KOG1059|consen 128 LALSGLSCIVTPDL-ARDL------ADDVFTLLNSS---------------KPYVRKKAILLLYKVFLKY---PEALR-- 180 (877)
T ss_pred heecccccccCchh-hHHH------HHHHHHHHhcC---------------chHHHHHHHHHHHHHHHhh---hHhHh--
Confidence 36666665554321 3333 23478889887 3779999999999877543 34455
Q ss_pred cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch------------------hhHhh---------------hhhHH
Q 014913 194 NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM------------------QLISL---------------RQELF 240 (416)
Q Consensus 194 ~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~------------------~~~~~---------------~~g~i 240 (416)
+ .+|.|++-|..+++.++..|+.+++.|+..+..+ +.++. -.-.|
T Consensus 181 ~--~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLi 258 (877)
T KOG1059|consen 181 P--CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLI 258 (877)
T ss_pred h--hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhh
Confidence 4 9999999999999999999999999999654322 21110 00133
Q ss_pred HHHHHHhccCCChHHHHHHHHHHH--HhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHH
Q 014913 241 VEVIQVLHDHISQQASKSALEVLV--NICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAE 318 (416)
Q Consensus 241 ~~Lv~lL~~~~~~~~~~~A~~aL~--nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~ 318 (416)
++|..+..+..-..+.-.+..++. +++.+..+..+.+.. +|..|-.++.+. |+.++--.+-++.-++..+--.
T Consensus 259 eplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqL-CvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~-- 333 (877)
T KOG1059|consen 259 EPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKA-- 333 (877)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHH--
Confidence 333333332211111122222222 233333344444444 677777788777 8899999998988887743222
Q ss_pred HHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHH-hcCCcHHHHHHHHHHHHHHH
Q 014913 319 LLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVL-QVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 319 i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll-~~~~~~~~k~~A~~ll~~l~ 397 (416)
+..+ -..+++.|...+..++-.|+..|+-+.... ...+ .+..|+.-+ .++++.=--+..-.++..++
T Consensus 334 Vqa~---kdlIlrcL~DkD~SIRlrALdLl~gmVskk----Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 334 VQAH---KDLILRCLDDKDESIRLRALDLLYGMVSKK----NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred HHHh---HHHHHHHhccCCchhHHHHHHHHHHHhhhh----hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 2221 134556566667788999999998887643 3433 244554443 33432222344455666555
Q ss_pred H
Q 014913 398 R 398 (416)
Q Consensus 398 ~ 398 (416)
+
T Consensus 402 ~ 402 (877)
T KOG1059|consen 402 Q 402 (877)
T ss_pred h
Confidence 5
No 200
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.01 E-value=0.0049 Score=63.14 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=36.3
Q ss_pred ccCcCccccCCCcee---cCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVT---VPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~---l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.||+|..-+.|--+ .+|+|.||..||..|-+- ..+||+|+..|.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFG 171 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhh
Confidence 468888877777654 379999999999999764 679999998886
No 201
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.97 E-value=0.35 Score=44.47 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh-CCCCcchHHHHhhCcHHHHHHHh
Q 014913 211 ESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI-CPWGRNRIKGVEAGAVSILIDLL 289 (416)
Q Consensus 211 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL-s~~~~n~~~i~~~G~v~~Lv~lL 289 (416)
.....|..+|.-++-.+...+.+.....++..|+++|.....+..+.+++.+|..+ ..++.|...+-+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566888999998777777777777799999999995433678888899888875 56677999999999999999999
Q ss_pred hcccchhhhHHHHHHHHHHHc
Q 014913 290 LDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 290 ~~~~~~~~~~~~a~~~L~~La 310 (416)
++...+.+++-+++..|.-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 987556677777777766543
No 202
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.96 E-value=4.9 Score=40.93 Aligned_cols=250 Identities=16% Similarity=0.167 Sum_probs=121.2
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhh---
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELG--- 185 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~--- 185 (416)
..++.++++.+..++.++- -..+.+ -+|..|-.+|++. ....+-.|+++|-.|+.-...
T Consensus 278 emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~---------------rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 278 EMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKST---------------RVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred hhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcc---------------hHHHHHHHHHHHHHHHhhCCceee
Confidence 5777888888777776541 111111 2466666777766 366788899999988864332
Q ss_pred -----hhhhhccccCCcc--HHHHHHHhcCCHHHHHHHHHHHHHhhcc-cCchhhHhhhhhHHHHHHHHhccCCChHHHH
Q 014913 186 -----LKSLVMGRNGTFV--DSLTQIMQRGTYESRAYAVLLLKSMLEV-AEPMQLISLRQELFVEVIQVLHDHISQQASK 257 (416)
Q Consensus 186 -----~~~~i~~~~G~~i--~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 257 (416)
...+|.+.. ..| -.+..+|+.|+.+........|-++..+ .++-+.++. .+++.|--..-+. +.
T Consensus 340 vcN~evEsLIsd~N-r~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~i--da~rsLsl~Fp~k-----~~ 411 (898)
T COG5240 340 VCNKEVESLISDEN-RTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAI--DALRSLSLLFPSK-----KL 411 (898)
T ss_pred ecChhHHHHhhccc-ccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeH--HHHHHHHhhCcHH-----HH
Confidence 112222221 122 1234555555555444444444443322 112222221 2333333222111 12
Q ss_pred HHHHHHHHh-CCCC--cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHH-----hcCC----
Q 014913 258 SALEVLVNI-CPWG--RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELL-----KHGA---- 324 (416)
Q Consensus 258 ~A~~aL~nL-s~~~--~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~-----~~~~---- 324 (416)
.-+.-|.+. +... +-++. +|.++.++++. +++.+|.|+..|+..-.+-+ ++..+. ..+|
T Consensus 412 s~l~FL~~~L~~eGg~eFK~~-----~Vdaisd~~~~---~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~ 483 (898)
T COG5240 412 SYLDFLGSSLLQEGGLEFKKY-----MVDAISDAMEN---DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAK 483 (898)
T ss_pred HHHHHHHHHHHhcccchHHHH-----HHHHHHHHHhh---CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC
Confidence 222222221 1111 11222 34556666655 35667777766665533222 221111 1011
Q ss_pred ----chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 325 ----GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 325 ----~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
-|..+.+.+.-.+.-++..|+.+|...+-...+.-.. ..+.-.|-+.+.. -+++.|++|..+|+.++.
T Consensus 484 ~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~-----~sv~~~lkRclnD-~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 484 TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP-----QSVENALKRCLND-QDDEVRDRASFLLRNMRL 555 (898)
T ss_pred CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH-----HHHHHHHHHHhhc-ccHHHHHHHHHHHHhhhh
Confidence 1222222222234556777788886666555442111 2334445556654 489999999999999985
No 203
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=94.90 E-value=0.0077 Score=53.18 Aligned_cols=55 Identities=18% Similarity=0.337 Sum_probs=41.9
Q ss_pred CCCCCCCCcccCcCcc-ccCCCc-ee---cC-CcCcccHHHHHHHHHcCCCCCCC--CCCcccc
Q 014913 1 MEEIDVPTFFLCPISL-AIMKDP-VT---VP-TGITYDRESIEKWLFAGKNNTCP--MTKQVLS 56 (416)
Q Consensus 1 ~~~~~~~~~~~Cpic~-~~~~~P-v~---l~-cght~c~~ci~~~~~~~~~~~CP--~~~~~l~ 56 (416)
|++.+-..+..||||+ +.+-.| |. .| |=|..|.+|..+.|+.+ +..|| -|++.+.
T Consensus 2 ~DE~~~~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G-pAqCP~~gC~kILR 64 (314)
T COG5220 2 MDEYEEMEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG-PAQCPYKGCGKILR 64 (314)
T ss_pred cchhhhhhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC-CCCCCCccHHHHHH
Confidence 4555556678999999 455555 32 24 99999999999999876 88999 7877765
No 204
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.78 E-value=0.17 Score=36.87 Aligned_cols=66 Identities=20% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 014913 255 ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK 321 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 321 (416)
-.+.|++|+.++++.+.....+-+.++|+.++++....+ .-.++-.|..+|.-++...++.+.+.+
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 367899999999998888887778899999999998764 568899999999999999998877755
No 205
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=2.5 Score=45.86 Aligned_cols=222 Identities=16% Similarity=0.136 Sum_probs=132.5
Q ss_pred HHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.+..|++.++ ++..+|-.|++.+..++...+. .++ .-+|...+.++.-.. +...-..|.-+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~La-d~vi~svid~~~p~e--------------~~~aWHgacLa 403 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELA-DQVIGSVIDLFNPAE--------------DDSAWHGACLA 403 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHH-HHHHHHHHHhcCcCC--------------chhHHHHHHHH
Confidence 3444555554 3458888899999999987761 111 234666666555441 35566688888
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhc--------CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHH-HHHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQR--------GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVE-VIQV 246 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~-Lv~l 246 (416)
|.+|+...=-....+. ..++.++.-|.- ....+|..|+-+++.++...+.....-.-....+. |+..
T Consensus 404 LAELA~rGlLlps~l~----dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~A 479 (1133)
T KOG1943|consen 404 LAELALRGLLLPSLLE----DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVA 479 (1133)
T ss_pred HHHHHhcCCcchHHHH----HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHH
Confidence 9888853321111221 255666655532 23568999999999998664433221111122233 2333
Q ss_pred hccCCChHHHHHHHHHHHHhCCCCcch--------------------------HHHHh-hCcHHHHHHHhhcc---cchh
Q 014913 247 LHDHISQQASKSALEVLVNICPWGRNR--------------------------IKGVE-AGAVSILIDLLLDS---SLER 296 (416)
Q Consensus 247 L~~~~~~~~~~~A~~aL~nLs~~~~n~--------------------------~~i~~-~G~v~~Lv~lL~~~---~~~~ 296 (416)
+-+. ...+|.+|..|+...-.-..|. ..+.+ .|...++++-|... .++.
T Consensus 480 lFDr-evncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 480 LFDR-EVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV 558 (1133)
T ss_pred hcCc-hhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH
Confidence 4455 7899999999998765432111 11233 56677777766543 2689
Q ss_pred hhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHH
Q 014913 297 RASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAV 345 (416)
Q Consensus 297 ~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~ 345 (416)
.+++.++.+|..|+... .+... .+.+++++....+.+...+..+.
T Consensus 559 ~irelaa~aL~~Ls~~~---pk~~a-~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTE---PKYLA-DYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHHHHHHHHHHHHHHhh---HHhhc-ccchhhhhhhhcCCChHHhhhhH
Confidence 99999999999987642 33444 36677777766655544443333
No 206
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=6.9 Score=40.81 Aligned_cols=264 Identities=10% Similarity=0.105 Sum_probs=138.4
Q ss_pred HHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHh
Q 014913 100 KLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCN 178 (416)
Q Consensus 100 ~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~ 178 (416)
.+-..|. .+|....-|+.++.++-.. ++++.+.. -|| ++|.++. +..-++..|+-+|..
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~--DI~---KlLvS~~-------------~~~~vkqkaALclL~ 174 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFAD--DIP---KLLVSGS-------------SMDYVKQKAALCLLR 174 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhh--hhH---HHHhCCc-------------chHHHHHHHHHHHHH
Confidence 3444443 3567777888888887543 24444432 233 6776662 123455556555555
Q ss_pred cCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC-C------
Q 014913 179 LKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH-I------ 251 (416)
Q Consensus 179 l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~------ 251 (416)
|-... ..++- .|+..+.++.+|+..+..+...+...|..|+........-..- -++..|-.+.... .
T Consensus 175 L~r~s---pDl~~--~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYT 248 (938)
T KOG1077|consen 175 LFRKS---PDLVN--PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYT 248 (938)
T ss_pred HHhcC---ccccC--hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhce
Confidence 55443 23444 3358899999998888888888888888887553322221111 1233333332211 0
Q ss_pred -----ChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHhhcccchhhhH-----HHHHHHHHHHcCChhhHHHH
Q 014913 252 -----SQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLLLDSSLERRAS-----EMILTVLDLLCQCAEGRAEL 319 (416)
Q Consensus 252 -----~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~-----~~a~~~L~~La~~~~~~~~i 319 (416)
.+=++-..+++|.++-.-.+ .|.++.+ +...++......+....++ ...+--.-+|+.+-+.-..+
T Consensus 249 yy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~l 326 (938)
T KOG1077|consen 249 YYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPEL 326 (938)
T ss_pred eecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHH
Confidence 24456667777777744333 4444433 3444444444222112222 12222222333332222222
Q ss_pred HhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 320 LKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 320 ~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.. .++..|-++|.+.....+-.|..-+..|+.... ..+.+... ...++..|..+.+-..|++|..+|..+..
T Consensus 327 l~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~---s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD 398 (938)
T KOG1077|consen 327 LS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEF---SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD 398 (938)
T ss_pred HH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccc---hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 22 345566665555555677777777777776643 23333333 56666666655566677777777766554
No 207
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.46 E-value=0.16 Score=40.79 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHh--cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 94 NKAQITKLLNEAA--KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 94 ~~~~i~~lv~~l~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+-+.+..|++.|. .++....-|+..|..+++..|..|..+-+.|+=..+.+++.++ |++++.+
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~---------------d~eVr~e 105 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE---------------DPEVRYE 105 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S---------------SHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC---------------CHHHHHH
Confidence 4467778888884 3456667799999999999998999998999999999999987 6999999
Q ss_pred HHHHHHhcC
Q 014913 172 ALSILCNLK 180 (416)
Q Consensus 172 A~~~L~~l~ 180 (416)
|+.++..+-
T Consensus 106 AL~avQklm 114 (119)
T PF11698_consen 106 ALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 208
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.45 E-value=0.73 Score=48.71 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=75.7
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
++.+|..|++.|..+- -.+++. ..++++.+++.++++.+|..|+-++.++=.. ......+.|.+..+.
T Consensus 105 N~~iR~~AlR~ls~l~-----~~el~~----~~~~~ik~~l~d~~ayVRk~Aalav~kly~l---d~~l~~~~g~~~~l~ 172 (757)
T COG5096 105 NEEIRGFALRTLSLLR-----VKELLG----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL---DKDLYHELGLIDILK 172 (757)
T ss_pred CHHHHHHHHHHHHhcC-----hHHHHH----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc---CHhhhhcccHHHHHH
Confidence 6899999999998663 135555 3899999999999999999999999998533 233445568999999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCC
Q 014913 245 QVLHDHISQQASKSALEVLVNICPW 269 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~ 269 (416)
.++.+. ++.+..+|+.+|..+...
T Consensus 173 ~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 173 ELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHhhCC-CchHHHHHHHHHHHhchh
Confidence 999888 999999999999998654
No 209
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.41 E-value=0.0094 Score=62.38 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=39.7
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+.|++|.+ ..+|+++.|||.||+.|+...+.......||.|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 88888999999999999999987643457999987775
No 210
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.41 E-value=1.5 Score=43.47 Aligned_cols=150 Identities=16% Similarity=0.248 Sum_probs=105.5
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC----chhhHhhhhhHHHHHHHHhccC------CChHHHHHHHHHHHHh
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE----PMQLISLRQELFVEVIQVLHDH------ISQQASKSALEVLVNI 266 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~g~i~~Lv~lL~~~------~~~~~~~~A~~aL~nL 266 (416)
+...+..++...+.+-|-.|......++.+++ +++.+... =|.+.+=++|.++ .+.-.+.-++..|...
T Consensus 12 a~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF 90 (698)
T KOG2611|consen 12 ALDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF 90 (698)
T ss_pred chhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 33445566666677667777777777776654 44444444 4568888888643 2345667788888889
Q ss_pred CCCCc--chHHHHhhCcHHHHHHHhhcccchhh------hHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcCh
Q 014913 267 CPWGR--NRIKGVEAGAVSILIDLLLDSSLERR------ASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQ 338 (416)
Q Consensus 267 s~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~------~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~ 338 (416)
|..++ ....|++ .||.|...+..+. +++ +.+.+-..|..++..+.+.+.++. .|+++.+-+ +....+
T Consensus 91 C~~pElAsh~~~v~--~IP~llev~~~~~-d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q-~y~~~~ 165 (698)
T KOG2611|consen 91 CRVPELASHEEMVS--RIPLLLEVMSKGI-DTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQ-MYELPD 165 (698)
T ss_pred hCChhhccCHHHHH--hhhHHHHHHHhcC-CCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHH-HHhCCC
Confidence 99887 5667776 4999999998653 344 889999999999999999999988 799999987 554432
Q ss_pred --hhhHHHHHHHHHHh
Q 014913 339 --VASERAVRILLSIS 352 (416)
Q Consensus 339 --~~~~~a~~~L~~L~ 352 (416)
.....|+.++.-+.
T Consensus 166 ~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 166 GSHDMALALKVLLLLV 181 (698)
T ss_pred CchhHHHHHHHHHHHH
Confidence 34455555554433
No 211
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.37 E-value=0.48 Score=43.41 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh-hhhhhh
Q 014913 112 QIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL-GLKSLV 190 (416)
Q Consensus 112 ~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i 190 (416)
.++|+.-|+-+|.+ ++.|..+.++...--|-.+|...+..+ +-+.++-..+.+++.|...++ +...++
T Consensus 67 VcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r----------~~E~LRLtsLGVIgaLvK~d~~evi~fL 135 (262)
T PF04078_consen 67 VCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTR----------PFEYLRLTSLGVIGALVKTDDPEVISFL 135 (262)
T ss_dssp HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SH----------HHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhcccccc----------ccchhhHhHHHHHHHHHcCCcHHHHHHH
Confidence 35677777777775 569999999998877888886552100 013567778888888877443 333444
Q ss_pred ccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhh-------hhHHHHHHHHh-ccCCChHHHHHHHHH
Q 014913 191 MGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLR-------QELFVEVIQVL-HDHISQQASKSALEV 262 (416)
Q Consensus 191 ~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~Lv~lL-~~~~~~~~~~~A~~a 262 (416)
.+ . +.+|..++.+..|+.-.+.-|..++..+-.++.+-..+... ..++..+|.-+ +++ ++...++..++
T Consensus 136 l~-t-EiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrC 212 (262)
T PF04078_consen 136 LQ-T-EIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRC 212 (262)
T ss_dssp HC-T-THHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHH
T ss_pred Hh-h-chHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHH
Confidence 43 4 59999999999999999999999999988766544333221 13444444433 355 89999999999
Q ss_pred HHHhCCCCcchHHHHh
Q 014913 263 LVNICPWGRNRIKGVE 278 (416)
Q Consensus 263 L~nLs~~~~n~~~i~~ 278 (416)
-..|+.++..+..+.+
T Consensus 213 YlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 213 YLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHTTSTTHHHHHHH
T ss_pred HHHHccCHHHHHHHHH
Confidence 9999999998887754
No 212
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.36 E-value=0.029 Score=52.15 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=33.8
Q ss_pred cCcCccccCCCce----ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPV----TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv----~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.||+|.+.|.--= --+||+..|+.|....-.. -+..||.|+..+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhcc
Confidence 4999999885421 1379999999997764333 3678999999886
No 213
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.34 E-value=0.14 Score=44.76 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=78.4
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHH-hCCCC-cchHHHHhhCcHHHHHHHhhccc-------chhhhHHHHHHHHHH
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVN-ICPWG-RNRIKGVEAGAVSILIDLLLDSS-------LERRASEMILTVLDL 308 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~-~n~~~i~~~G~v~~Lv~lL~~~~-------~~~~~~~~a~~~L~~ 308 (416)
.-...+++.|+++ .... ..+..|.. |-..+ +=...+++.||+..|+.+|..-. .+......++.+|..
T Consensus 66 ~~p~~~i~~L~~~-~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYIKKLKSR-PSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcc-CccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 4556677777765 2221 22222221 11122 23567889999999999996431 134677889999999
Q ss_pred HcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHh
Q 014913 309 LCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSIS 352 (416)
Q Consensus 309 La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~ 352 (416)
|..+..|+..++.+.+++..++..|.+.+..++..+..+|..+|
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888878899999999999887
No 214
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.31 E-value=0.014 Score=42.32 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=23.7
Q ss_pred cccCcCccccCC-C---ceec----CCcCcccHHHHHHHHHc--CC-------CCCCCCCCcccc
Q 014913 9 FFLCPISLAIMK-D---PVTV----PTGITYDRESIEKWLFA--GK-------NNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~-~---Pv~l----~cght~c~~ci~~~~~~--~~-------~~~CP~~~~~l~ 56 (416)
+..|+||..++. + |+.. .|+++|=..|+.+||.. +. ...||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 568999998765 2 4432 68888999999999975 21 135999998875
No 215
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.28 E-value=0.41 Score=40.78 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=94.6
Q ss_pred ccHHHHHHHhc--CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC-cch
Q 014913 197 FVDSLTQIMQR--GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG-RNR 273 (416)
Q Consensus 197 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~ 273 (416)
.+..++..|.. ...++|..+.-++..+- +..+....+ -.-..+-.++..+ +.+....+..+|..|=... +..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHH
Confidence 56777777764 57888999999988883 222222222 2334444455555 5567788888888886655 433
Q ss_pred HH-HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC-hh-hhHHHHHHHH
Q 014913 274 IK-GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS-QV-ASERAVRILL 349 (416)
Q Consensus 274 ~~-i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~-~~-~~~~a~~~L~ 349 (416)
.. +...|.++.++.++.....+...+..++.+|..-|.....|..+.. .+++-|-+...... +. .+..|+-+|.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 44 4568999999999982222677777888888777777766766666 67888887553333 34 5666666654
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.23 E-value=0.088 Score=31.36 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.5
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKSMLEV 226 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 226 (416)
+|.++++++++++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999998753
No 217
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.18 E-value=0.049 Score=43.89 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=41.9
Q ss_pred CcccCcCccccCCCceec----CCcCcccHHHHHHHHHcC-CCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTV----PTGITYDRESIEKWLFAG-KNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l----~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~ 56 (416)
.-+.|.||++.-.|+--+ .||...|..|--..|... ..+.||+|+..++
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFK 132 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFK 132 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccc
Confidence 447899999999998876 589999999999999863 3689999998886
No 218
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.16 E-value=0.026 Score=38.20 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=33.8
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+..|=.|...-...++++|||..|+.|..-+- -..||.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r----YngCPfC~~~~~ 50 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER----YNGCPFCGTPFE 50 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhh----ccCCCCCCCccc
Confidence 34566777887889999999999998843321 346999999886
No 219
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.10 E-value=0.032 Score=51.39 Aligned_cols=45 Identities=24% Similarity=0.571 Sum_probs=36.1
Q ss_pred CcccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCC-CCCCCCCC
Q 014913 8 TFFLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGK-NNTCPMTK 52 (416)
Q Consensus 8 ~~~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~-~~~CP~~~ 52 (416)
.-|+||+-++.-.+ ||++.|||..-+..+.+.-.+|. .+.||-|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34899998877665 99999999999999888655542 58899984
No 220
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.98 E-value=7.5 Score=41.96 Aligned_cols=183 Identities=13% Similarity=0.150 Sum_probs=119.1
Q ss_pred HHHHHHHHHHh---cCcHHHHHHHHHHHHHHhcChhhhhHHhh--cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 96 AQITKLLNEAA---KSPQMQIKCLKKLRSIAAENETNKRCLES--AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 96 ~~i~~lv~~l~---~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
..+...+++|. .+.+++..|+.++..+..... +.+.. ...++.++.-|+.+ -.+.
T Consensus 568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~nE-----------------iTRl 627 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLGNE-----------------ITRL 627 (1233)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHhch-----------------hHHH
Confidence 34445566665 345888999999888766422 11111 24455566665543 4678
Q ss_pred HHHHHHHhcCCChhhh--hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc
Q 014913 171 EALSILCNLKISELGL--KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH 248 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~~--~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 248 (416)
.|++++..++.+.-.. ..... ..++.++..++......+.....++-.|..+-...-..-.-.-++..+-.++.
T Consensus 628 ~AvkAlt~Ia~S~l~i~l~~~l~----~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lis 703 (1233)
T KOG1824|consen 628 TAVKALTLIAMSPLDIDLSPVLT----EILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLIS 703 (1233)
T ss_pred HHHHHHHHHHhccceeehhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhh
Confidence 8899999888665322 22222 48899999998887788888888887776543222111111235556666676
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHH
Q 014913 249 DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLD 307 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~ 307 (416)
+. +....+.|...|..+..........+..-+++.++.+++++ -++-.|+.++.
T Consensus 704 es-dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp----llqg~al~~~l 757 (1233)
T KOG1824|consen 704 ES-DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP----LLQGGALSALL 757 (1233)
T ss_pred HH-HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc----cccchHHHHHH
Confidence 66 78888999999999988777666666677899999999876 34444444443
No 221
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.88 E-value=11 Score=40.81 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=145.8
Q ss_pred HHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHh----c
Q 014913 132 CLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ----R 207 (416)
Q Consensus 132 ~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~----~ 207 (416)
.+.+.||+..|+.+|.+-.+ -..........+.+|...+.-..+++.++. . ++++.|++.|. .
T Consensus 112 v~~~~gGL~~ll~~l~~~~~----------~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~--~-~al~~LL~~L~~~l~~ 178 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRD----------FSRGRELLQVLLKLLRYCCKVKVNRRALLE--L-NALNRLLSVLNRALQA 178 (802)
T ss_pred HhhcCCCHHHHHHHHHhhcc----------ccCcHHHHHHHHHHHHHHHhhHHHHHHHHH--c-CCHHHHHHHHHHHHhC
Confidence 35567999999999987531 001245666677788877777777777776 6 49999999885 3
Q ss_pred CC----HHHHHHHHHHHHHhhcccCchhhHh------------hhhhHHHHHHHHhccC---CChHHHHHHHHHHHHhCC
Q 014913 208 GT----YESRAYAVLLLKSMLEVAEPMQLIS------------LRQELFVEVIQVLHDH---ISQQASKSALEVLVNICP 268 (416)
Q Consensus 208 ~~----~~~~~~a~~~L~~l~~~~~~~~~~~------------~~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~nLs~ 268 (416)
++ .++-+....++..+.........-. ....-+..|++.+.+. .++...+..++.|-+|+.
T Consensus 179 ~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~ 258 (802)
T PF13764_consen 179 NQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY 258 (802)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc
Confidence 33 6778888888887765433211100 0112366777777643 257888889999999998
Q ss_pred CCcc-hHHHHhhCcHHHHHHHhhcc---cchh-hhHHHHHHHHHHHcCCh---hhHHHHHhcCCchHHHHHHHHhcCh--
Q 014913 269 WGRN-RIKGVEAGAVSILIDLLLDS---SLER-RASEMILTVLDLLCQCA---EGRAELLKHGAGLAIVSKKILRVSQ-- 338 (416)
Q Consensus 269 ~~~n-~~~i~~~G~v~~Lv~lL~~~---~~~~-~~~~~a~~~L~~La~~~---~~~~~i~~~~~~v~~Lv~~l~~~~~-- 338 (416)
+... -..+++. +.+.+++=.-+ ..+. -..+..+.+...+-.+. .-|..+++ .|.+...+++|....+
T Consensus 259 G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 259 GNEEKMDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred CCHHHHHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCccc
Confidence 7764 3444443 34333322211 0011 12233333333443332 22566776 7999989998876422
Q ss_pred --------------hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc-CCcHHHHHHHHHHHHHHHH
Q 014913 339 --------------VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV-DNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 339 --------------~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~~k~~A~~ll~~l~~ 398 (416)
..-..++..|.-|+.++.. .+.++...+++. ++-|+. .++...=..|-.+|..++.
T Consensus 336 ~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~---tQ~~~~~~~l~~-lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 336 KNTDSPEWKEFLSRPSLPYILRLLRGLARGHEP---TQLLIAEQLLPL-LHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred ccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHH---HHHHHHhhHHHH-HHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345677788888887653 444466677744 444432 2223333455555555554
No 222
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.85 E-value=0.08 Score=31.53 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
.+|.++++++++ ++++|.+|+.+|.+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 378999999999 99999999999998864
No 223
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.84 E-value=1.2 Score=44.74 Aligned_cols=154 Identities=16% Similarity=0.083 Sum_probs=108.9
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccc--hhhhHHHHHHHHHHHcCChhhHH
Q 014913 240 FVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSL--ERRASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~--~~~~~~~a~~~L~~La~~~~~~~ 317 (416)
...+..++.++ +...+..|...|..|+.+..-...+++..++..|.+++.++.. ..++....+.++..|-.+.----
T Consensus 85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 45667788888 8888888999999999999999999999999999999998742 34455556666665544332111
Q ss_pred HHHhcCCchHHHHHH--HHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 014913 318 ELLKHGAGLAIVSKK--ILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKL 395 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~--l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~ 395 (416)
..+. ...|...+.+ .......+-..|+..|-++.-++.. .++.+.+.--++.|+..++.. +......|.++++.
T Consensus 164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~--~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~na 239 (713)
T KOG2999|consen 164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT--LRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNA 239 (713)
T ss_pred eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH--HHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHH
Confidence 1122 1233333332 2333457788899999998887764 688888899999999999874 66666668777776
Q ss_pred HHH
Q 014913 396 HAR 398 (416)
Q Consensus 396 l~~ 398 (416)
+-+
T Consensus 240 l~~ 242 (713)
T KOG2999|consen 240 LFR 242 (713)
T ss_pred HHh
Confidence 654
No 224
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.73 E-value=3.6 Score=41.06 Aligned_cols=110 Identities=13% Similarity=0.131 Sum_probs=81.4
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcc-cCc-------------hhhHhhhhhHHHHHHHHhccCCChHHHHHHHHH
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEV-AEP-------------MQLISLRQELFVEVIQVLHDHISQQASKSALEV 262 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~-------------~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 262 (416)
.+..|+++|.+ +++...|+..+.-+..+ ++. ++++. .-.+|.|++-.++. +.+.+.+-+.|
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~-~~~~k~~yL~A 346 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEA-DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhc-ChhhHHHHHHH
Confidence 56677777765 67788899999988766 221 22222 24788888888877 66788899999
Q ss_pred HHHhCCCCcchHHHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh
Q 014913 263 LVNICPWGRNRIKGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 263 L~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~ 313 (416)
|..+-.+-+....+-+ ...+|.|++-|..+ +.+++..++.+|..+....
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHcC
Confidence 9998776664333333 45889999999877 7889999999999998765
No 225
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.69 E-value=0.38 Score=50.26 Aligned_cols=171 Identities=14% Similarity=0.118 Sum_probs=118.4
Q ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 98 ITKLLNEAAKS--PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 98 i~~lv~~l~~~--~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
+..+.+.++.+ .-...+++.++++|+..++..|..|.+.-+++-+-.++..+ ++..|..++..
T Consensus 543 ~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee---------------~~~lqraa~e~ 607 (748)
T KOG4151|consen 543 VKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEE---------------NPALQRAALES 607 (748)
T ss_pred hhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcc---------------cHHHHHHHHHH
Confidence 34444444322 24446789999999998888898899887777666665544 47889999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh-HhhhhhHHHHHHHHhccCCChH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL-ISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
+.||..++.-..+.+.+.. ..++.....+..........++.++-.+....++... +.....+...++.++.++ +.+
T Consensus 608 ~~NLl~~~~~~e~si~e~~-~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~ 685 (748)
T KOG4151|consen 608 IINLLWSPLLYERSIVEYK-DRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDE 685 (748)
T ss_pred HHHHHhhHHHHHHHhhccc-cCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhh
Confidence 9999999887777777544 4777777777776666777777777655554444333 444445778899999998 899
Q ss_pred HHHHHHHHHHHhCCCC-cchHHHHhhCcHHHH
Q 014913 255 ASKSALEVLVNICPWG-RNRIKGVEAGAVSIL 285 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~L 285 (416)
++...+..+.|+.... +....+++...++.+
T Consensus 686 ~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l 717 (748)
T KOG4151|consen 686 IQHRGLVIILNLFEALFEIAEKIFETEVMELL 717 (748)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccchHHHHH
Confidence 9999988888854322 233444444444333
No 226
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.56 E-value=2.3 Score=43.19 Aligned_cols=181 Identities=9% Similarity=0.046 Sum_probs=115.3
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh-------------
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ------------- 231 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~------------- 231 (416)
+.+++..|-.+|..+-.-....-+...++. ........+++.+.++...|+..-..++...-.-.
T Consensus 234 d~e~q~aafgCl~kim~LyY~fm~~ymE~a--L~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn 311 (858)
T COG5215 234 DEELQHAAFGCLNKIMMLYYKFMQSYMENA--LAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQN 311 (858)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhh
Confidence 578999998898876543322222333232 45556677888999999999888777764321000
Q ss_pred ---hHhhhhhHHHHHHHHhcc------CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHH
Q 014913 232 ---LISLRQELFVEVIQVLHD------HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMI 302 (416)
Q Consensus 232 ---~~~~~~g~i~~Lv~lL~~------~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a 302 (416)
....-.+++|.|..+|.. +.++....+|..+|.-.+....+ .|++. +...+=+-+.++ +-.-+|.|
T Consensus 312 ~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~--~w~nreaa 386 (858)
T COG5215 312 HGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSE--SWANREAA 386 (858)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCc--hhhhHHHH
Confidence 001123589999999964 12567777887777655543222 22221 222233444555 55668889
Q ss_pred HHHHHHHcCChh--hHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcC
Q 014913 303 LTVLDLLCQCAE--GRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKF 354 (416)
Q Consensus 303 ~~~L~~La~~~~--~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~ 354 (416)
+.++..+-..+. .+..++. .++|.+...+....-.+++.+++++..|+.+
T Consensus 387 vmAfGSvm~gp~~~~lT~~V~--qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 387 VMAFGSVMHGPCEDCLTKIVP--QALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHhhhhhcCccHHHHHhhHH--hhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 999998877543 3556665 6889999866644558899999999999875
No 227
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.029 Score=40.33 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=37.2
Q ss_pred CcccCcCccccCCC-ceec-CCcCcccHHHHHHHHHcCC-CCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKD-PVTV-PTGITYDRESIEKWLFAGK-NNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~-Pv~l-~cght~c~~ci~~~~~~~~-~~~CP~~~~~l~ 56 (416)
-+-.||-|+-.--| |.++ .|.|.|=.-||.+|+.... ...||.|++..+
T Consensus 30 Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 30 FDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34467777655555 6666 8999999999999998632 578999998765
No 228
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=9.6 Score=40.30 Aligned_cols=206 Identities=11% Similarity=0.149 Sum_probs=136.1
Q ss_pred HHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHh
Q 014913 100 KLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCN 178 (416)
Q Consensus 100 ~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~ 178 (416)
.|..+|.+ .+..+.+|.+.|..+...+... ....|..|+-..+. +.++++-..--|..
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVask---------------n~EVKkLVyvYLlr 97 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASK---------------NIEVKKLVYVYLLR 97 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhcc---------------CHHHHHHHHHHHHH
Confidence 45666643 4688899998888877665532 24567888888877 58898888777777
Q ss_pred cCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHH
Q 014913 179 LKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKS 258 (416)
Q Consensus 179 l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 258 (416)
.|..+++ +.. - .|..+=+-|..+|..+|..|..+|..+=. .+ ...=.+-.+-+...+. ++-+|+.
T Consensus 98 YAEeqpd---LAL--L--SIntfQk~L~DpN~LiRasALRvlSsIRv------p~-IaPI~llAIk~~~~D~-s~yVRk~ 162 (968)
T KOG1060|consen 98 YAEEQPD---LAL--L--SINTFQKALKDPNQLIRASALRVLSSIRV------PM-IAPIMLLAIKKAVTDP-SPYVRKT 162 (968)
T ss_pred HhhcCCC---cee--e--eHHHHHhhhcCCcHHHHHHHHHHHHhcch------hh-HHHHHHHHHHHHhcCC-cHHHHHH
Confidence 7754433 322 2 66777788889999999877777655521 11 1111222233344555 8999999
Q ss_pred HHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC
Q 014913 259 ALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS 337 (416)
Q Consensus 259 A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~ 337 (416)
|+.||-.|-. +++.+.+++ ..+=.||.+. ++-+.-.|+.+...+|-+ |-.++. +-...|-+++...+
T Consensus 163 AA~AIpKLYsLd~e~k~qL~-----e~I~~LLaD~--splVvgsAv~AF~evCPe---rldLIH--knyrklC~ll~dvd 230 (968)
T KOG1060|consen 163 AAHAIPKLYSLDPEQKDQLE-----EVIKKLLADR--SPLVVGSAVMAFEEVCPE---RLDLIH--KNYRKLCRLLPDVD 230 (968)
T ss_pred HHHhhHHHhcCChhhHHHHH-----HHHHHHhcCC--CCcchhHHHHHHHHhchh---HHHHhh--HHHHHHHhhccchh
Confidence 9999999855 445555443 3444666676 788888898888887753 233333 34566777666667
Q ss_pred hhhhHHHHHHHHHHhc
Q 014913 338 QVASERAVRILLSISK 353 (416)
Q Consensus 338 ~~~~~~a~~~L~~L~~ 353 (416)
++.|-..+..|..-|+
T Consensus 231 eWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 231 EWGQVVLINMLTRYAR 246 (968)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7777777777776554
No 229
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=93.45 E-value=0.079 Score=46.88 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=44.0
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCC--CCccccCCCCCCCchhH
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPM--TKQVLSSECELTPNHTL 67 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~--~~~~l~~~~~l~~n~~l 67 (416)
.+|||+.....-|+.. +|+|.|++.-|..++.-.....||. |.+... .+.+..++.+
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~-~~~~v~d~Il 249 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEV-VDPYVCDHIL 249 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchhee-ccchhhhHHH
Confidence 6999999999999865 8999999999999986323677887 666665 5555555555
No 230
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.94 E-value=6.4 Score=38.46 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=133.2
Q ss_pred HHHHHHHHHHh-c-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH-
Q 014913 96 AQITKLLNEAA-K-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA- 172 (416)
Q Consensus 96 ~~i~~lv~~l~-~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A- 172 (416)
+++..++..+. + +...|+.++-.|...+.+ +..|..+...|.+..+++.+..... ++ +...+
T Consensus 21 Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~-------------d~-~~~l~~ 85 (361)
T PF07814_consen 21 DEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPD-------------DD-ILALAT 85 (361)
T ss_pred HHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccc-------------hH-HHHHHH
Confidence 56788888886 2 348888898888888885 5699999999999999999965521 22 33333
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc--
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD-- 249 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-- 249 (416)
+.++.-++.+... ..++. .. .....++.+|... ..+.....- .....+..+. ....+...-.++..
T Consensus 86 a~i~~~l~~d~~~-~~l~~-~~-~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~--~~~~~~~~~~~~~~~~ 154 (361)
T PF07814_consen 86 AAILYVLSRDGLN-MHLLL-DR-DSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKV--QQKSRSLCKELLSSGS 154 (361)
T ss_pred HHHHHHHccCCcc-hhhhh-ch-hHHHHHHHHhccccccccccchh------hhhhhhhhHH--HHHHHHHHHHHHhccc
Confidence 4444555544432 33433 24 3777778888711 000000000 0000000000 00111212222210
Q ss_pred ------CCChHHHHHHHHHHHHhC--------------C-CCcchHHHHhhCcHHHHHHHhhc----cc----------c
Q 014913 250 ------HISQQASKSALEVLVNIC--------------P-WGRNRIKGVEAGAVSILIDLLLD----SS----------L 294 (416)
Q Consensus 250 ------~~~~~~~~~A~~aL~nLs--------------~-~~~n~~~i~~~G~v~~Lv~lL~~----~~----------~ 294 (416)
.....-+..|..+|-.++ . .+.-+..+.+.|++..++.++.+ .. .
T Consensus 155 ~~~~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~ 234 (361)
T PF07814_consen 155 SWKSPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQ 234 (361)
T ss_pred cccccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchH
Confidence 112234445555555552 0 11246677888999999999862 10 1
Q ss_pred hhhhHHHHHHHHHHHcC-ChhhHHHHHhcCC-chHHHHHHHHhc-C---hhhhHHHHHHHHHHhcCCCChHHHHHHHhcC
Q 014913 295 ERRASEMILTVLDLLCQ-CAEGRAELLKHGA-GLAIVSKKILRV-S---QVASERAVRILLSISKFSATNSVLQEMLQIG 368 (416)
Q Consensus 295 ~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~-~v~~Lv~~l~~~-~---~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G 368 (416)
+-...+.++.+|.+.+. +.+++.......+ .++.+...+... . ......++.++.||+.+++. ...++...+
T Consensus 235 ~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~--~c~~~~s~~ 312 (361)
T PF07814_consen 235 SLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS--ACEEFASPK 312 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc--chHhhhhhH
Confidence 22355678888888875 4555655555333 223333323322 1 23367889999999988864 444444443
No 231
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.90 E-value=3.9 Score=43.63 Aligned_cols=230 Identities=14% Similarity=0.172 Sum_probs=152.9
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
.|...-.|.+++...+...-.+..+.. . .+...+..+.-. .+-++..|+.++...+..+ ...--.++.+..|
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L 535 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQ--H--FLNATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDGL 535 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHH--H--HHHHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHHH
Confidence 455555677777655544323333333 1 444555555433 4556777777777766321 1122245788888
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcC
Q 014913 244 IQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHG 323 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~ 323 (416)
.++.... +.++.-.-..+|...+..+.-.....++-+.|..+.+...-+.++.+...+-.++..|+...++..-+.+
T Consensus 536 ~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-- 612 (1005)
T KOG2274|consen 536 LQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-- 612 (1005)
T ss_pred HHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH--
Confidence 8888876 7888888899999998877766666777777877777754444788888888888888876655555554
Q ss_pred CchHHHHHHHHhcC----hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHH-HhcCCcHHHHHHHHHHHHHHHH
Q 014913 324 AGLAIVSKKILRVS----QVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLV-LQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~l-l~~~~~~~~k~~A~~ll~~l~~ 398 (416)
-.+|.++..|.... ......++.+|..+-++.+.+ .-+.+. .-++|++... +++ .+.++-+.+...|+.+-.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l~-~~~FpaVak~tlHs-dD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLLI-CYAFPAVAKITLHS-DDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHHH-HHHhHHhHhheeec-CChHHHHhHHHHHHHHHh
Confidence 57999999777654 345667777887777777654 333333 3567777666 455 478889999998887655
Q ss_pred h-------ccCCCCCC
Q 014913 399 A-------WKNSPCVP 407 (416)
Q Consensus 399 ~-------~~~~~~~~ 407 (416)
. |...|.+.
T Consensus 690 ~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 690 VTLEQLLTWHDEPGHN 705 (1005)
T ss_pred cCHHHHHhhccCCCcc
Confidence 3 67777654
No 232
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=92.86 E-value=10 Score=37.25 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=124.0
Q ss_pred HHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCC---C----CCCCCCCCCC----CCC----cchHHHHH----H
Q 014913 114 KCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNA---M----EESPEGFDNL----HES----SRPVDEAL----S 174 (416)
Q Consensus 114 ~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~---~----~~~~~~~~~~----~~~----~~~~~~A~----~ 174 (416)
.|+..|-.+....+..-..+.+.||+..++..|..+.. . ...|.+..+. ..+ +--|...+ +
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk 82 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLK 82 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHH
Confidence 35556666666665567778889999999999975421 1 0111111000 001 11123333 3
Q ss_pred HHHhcCC-C---hhhhhhhhccccCCccHHHHHHHhcC---CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 175 ILCNLKI-S---ELGLKSLVMGRNGTFVDSLTQIMQRG---TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 175 ~L~~l~~-~---~~~~~~~i~~~~G~~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
.+..+.. + .+..+.++. .. ..+..|..++++. ...+-..|+.++..+..++...-.+..+.|.++.+++.+
T Consensus 83 ~l~~~~~~~~~~~~~lrnl~D-~s-~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i 160 (379)
T PF06025_consen 83 FLSHAMQHSGGFGDRLRNLID-SS-SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAI 160 (379)
T ss_pred HHHHHhccCCCcccccccccc-hh-hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHH
Confidence 3333333 1 122233443 12 2455666666654 467888899999999888777778888889999999988
Q ss_pred c-cC--CChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc-----chhhhHHHHHHHHHHHcCC
Q 014913 248 H-DH--ISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS-----LERRASEMILTVLDLLCQC 312 (416)
Q Consensus 248 ~-~~--~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~-----~~~~~~~~a~~~L~~La~~ 312 (416)
. .+ .+.++...--.+|..||.+.+..+.+.+.+.++.+++++.+.. ...+.....-..+..|.++
T Consensus 161 ~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH 233 (379)
T PF06025_consen 161 TAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRH 233 (379)
T ss_pred hccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHcc
Confidence 7 43 3567777777889999999999999999999999999997652 0112333344455566664
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.75 E-value=0.52 Score=40.16 Aligned_cols=135 Identities=18% Similarity=0.188 Sum_probs=88.4
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhc-ccCchhhHhhhhhHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLE-VAEPMQLISLRQELFVEV 243 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L 243 (416)
.++++..|+-++..+- +. .++-.. . ..-+.+-.++..++.+....+..++..+=. ..+-...+....|.++.+
T Consensus 18 ~~~~r~~a~v~l~k~l--~~-~~~~~~--~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL--DA-AREEFK--E-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp SCCHHHHHHHHHHHHH--HH-HHHHHH--H-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CHhHHHHHHHHHHHHH--HH-hHHHHH--H-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 3778988888887762 22 222222 1 133444555555555566777777776642 223344455566999999
Q ss_pred HHHhc--cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhh-hHHHHHHHHHH
Q 014913 244 IQVLH--DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERR-ASEMILTVLDL 308 (416)
Q Consensus 244 v~lL~--~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~-~~~~a~~~L~~ 308 (416)
+.+.. .. +...+..++.+|..-|.+.+.|..+.+. +++.|-++++... ++. ++..|+-.|.-
T Consensus 92 ~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~-~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 92 LPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSK-DDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC--HH-CHHHHHHHHHH
T ss_pred HHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcccc-chHHHHHHHHHHHhc
Confidence 99998 66 8888889999888877776677766666 6899999996542 444 78888777653
No 234
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=0.076 Score=50.48 Aligned_cols=50 Identities=18% Similarity=0.410 Sum_probs=34.8
Q ss_pred CCcccCcCccccCCCce----ecCCcCcccHHHHHHHHHcC-CCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPV----TVPTGITYDRESIEKWLFAG-KNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv----~l~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~ 56 (416)
|-.-.|.||-+.+-.-- +-.|||+|--.|+.+||... .+..||.|+-.+.
T Consensus 2 pi~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 2 PIMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred CccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 33457999965443211 22599999999999999853 1368999984444
No 235
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.67 E-value=8.1 Score=35.53 Aligned_cols=201 Identities=19% Similarity=0.132 Sum_probs=121.1
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHH
Q 014913 135 SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRA 214 (416)
Q Consensus 135 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~ 214 (416)
...+||.|+..|...+ ..+.++.+|..+|..+- . + ..++.+-+..+.+-..+++
T Consensus 65 ~~~Av~~l~~vl~des-------------q~pmvRhEAaealga~~-~-----------~-~~~~~l~k~~~dp~~~v~E 118 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDES-------------QEPMVRHEAAEALGAIG-D-----------P-ESLEILTKYIKDPCKEVRE 118 (289)
T ss_pred cchhhHHHHHHhcccc-------------cchHHHHHHHHHHHhhc-c-----------h-hhHHHHHHHhcCCccccch
Confidence 3468999999988763 24788899999998664 2 2 1444444555556667777
Q ss_pred HHHHHHHHhhcccCchh------hHhh------hhhHHHHHHHHhccCCCh-HHHHHHHHHHHHhCCCCcchHHHHhhCc
Q 014913 215 YAVLLLKSMLEVAEPMQ------LISL------RQELFVEVIQVLHDHISQ-QASKSALEVLVNICPWGRNRIKGVEAGA 281 (416)
Q Consensus 215 ~a~~~L~~l~~~~~~~~------~~~~------~~g~i~~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~n~~~i~~~G~ 281 (416)
-+..+|..+-..+.... .+.+ ..+-+.-|-..|.+...+ --+..|...|+|+ ....+
T Consensus 119 Tc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~Eea 188 (289)
T KOG0567|consen 119 TCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEA 188 (289)
T ss_pred HHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHH
Confidence 77777777753221111 0000 001122233323222011 1222344444432 11235
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc--ChhhhHHHHHHHHHHhcCCCChH
Q 014913 282 VSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV--SQVASERAVRILLSISKFSATNS 359 (416)
Q Consensus 282 v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~ 359 (416)
|-+|++-+..+ +.-.+..++-+|..|-. .-+|+.|.+.|... .+.++..|+.+|..++..
T Consensus 189 I~al~~~l~~~--SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e----- 250 (289)
T KOG0567|consen 189 INALIDGLADD--SALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE----- 250 (289)
T ss_pred HHHHHHhcccc--hHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----
Confidence 66677777666 67788888888887733 35678888877765 357899999999988853
Q ss_pred HHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 360 VLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 360 ~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
..++.|...+..+ .+..++.+...|..+..
T Consensus 251 --------~~~~vL~e~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 251 --------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred --------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence 3466677777654 77888888888886544
No 236
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.39 E-value=0.12 Score=48.98 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=48.0
Q ss_pred ccCcCccccCCC------ceecCCcCcccHHHHHHHHHcCCCCCCCCCCccc--cC--CCCCCCchhHHHHHHHH
Q 014913 10 FLCPISLAIMKD------PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVL--SS--ECELTPNHTLRRLIQSW 74 (416)
Q Consensus 10 ~~Cpic~~~~~~------Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l--~~--~~~l~~n~~l~~~i~~~ 74 (416)
+.|-||.+-|.. |-.+.|||++|..|+...+..+ .-.||.|+.+. .. -..+..|+.+.+.++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~-~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS-RILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc-eeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 458888776654 8889999999999998887664 66789999884 21 12467777777777765
No 237
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.22 E-value=0.1 Score=39.89 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=24.5
Q ss_pred CCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 26 PTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 26 ~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
.|+|.|=.-||.+|+++ ...||.+++.-
T Consensus 80 ~CNHaFH~hCisrWlkt--r~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT--RNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhh--cCcCCCcCcce
Confidence 69999999999999987 67999997653
No 238
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=92.21 E-value=6.4 Score=40.72 Aligned_cols=163 Identities=15% Similarity=0.089 Sum_probs=98.5
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHh---hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLE---SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL 184 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~---~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~ 184 (416)
.++.+.-|+..||.++.+...+-..+- ....+..++..+.- ++..+--++++|.|+-.+.-
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~----------------~~an~ll~vR~L~N~f~~~~ 620 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA----------------DPANQLLVVRCLANLFSNPA 620 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc----------------chhHHHHHHHHHHHhccCHH
Confidence 347788899999988887654333322 22356666666652 36778889999999998865
Q ss_pred hhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhc--ccCchhhHhhhhhHHHHHHHHh----ccCCChHHHHH
Q 014913 185 GLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLE--VAEPMQLISLRQELFVEVIQVL----HDHISQQASKS 258 (416)
Q Consensus 185 ~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~Lv~lL----~~~~~~~~~~~ 258 (416)
.. +++....-..+..++..=...+..++..-+....|++. ..++.+ .|+.+.|...+ ..-.+.++.-.
T Consensus 621 g~-~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR 694 (745)
T KOG0301|consen 621 GR-ELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYR 694 (745)
T ss_pred HH-HHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHH
Confidence 44 44431110122222222222456677766666666652 212221 13344444333 32224455666
Q ss_pred HHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc
Q 014913 259 ALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 259 A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
.+.||.+|+..+.+..++.+.--|..++.-+++.
T Consensus 695 ~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 695 LLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 7888999999998888888877788888888765
No 239
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.18 E-value=0.98 Score=37.75 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=68.8
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
.++..|.+.|.+.++.++-.|+.+|-.+..+.+. .+..++...+.+..|+.++.....+.+|+++..++..-.....+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4566777788888889999999999999988764 688889999999999999976668899999999999888877766
Q ss_pred CCC
Q 014913 404 PCV 406 (416)
Q Consensus 404 ~~~ 406 (416)
|-.
T Consensus 120 ~~l 122 (142)
T cd03569 120 PQL 122 (142)
T ss_pred ccc
Confidence 653
No 240
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.04 E-value=6.4 Score=40.43 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 95 KAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 95 ~~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.+....++...++++..+.-|..-|....++.++..+ -+|..++.|.+.+ +..++..|++
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDe---------------d~~iR~~aik 81 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDE---------------DVQIRKQAIK 81 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-S---------------SHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc---------------cHHHHHHHHH
Confidence 3455556666656778888888888888887776444 3577888898876 5889999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc---cCC
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH---DHI 251 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~~~ 251 (416)
.|-.+|.++. +.+. .....|+.+|++.+.......-.+|..|-..+ . .+.+..|..-+. ++
T Consensus 82 ~lp~~ck~~~---~~v~----kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~- 145 (556)
T PF05918_consen 82 GLPQLCKDNP---EHVS----KVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSG- 145 (556)
T ss_dssp HGGGG--T-----T-HH----HHHHHHHHHTT---HHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-
T ss_pred hHHHHHHhHH---HHHh----HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccC-
Confidence 9999998753 3443 36778999999888777776777777665432 1 133444444333 55
Q ss_pred ChHHHHHHHHHHHH
Q 014913 252 SQQASKSALEVLVN 265 (416)
Q Consensus 252 ~~~~~~~A~~aL~n 265 (416)
+..+++.++..|..
T Consensus 146 de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 146 DEQVRERALKFLRE 159 (556)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 67788888877753
No 241
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=1.2 Score=46.47 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=101.3
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
+..|-+++..... |.+.++-.---|.|-+...... . - +++..+++=-.+.++.+|..|
T Consensus 49 slF~dvvk~~~T~---------------dlelKKlvyLYl~nYa~~~P~~----a--~-~avnt~~kD~~d~np~iR~lA 106 (734)
T KOG1061|consen 49 SLFPDVVKCMQTR---------------DLELKKLVYLYLMNYAKGKPDL----A--I-LAVNTFLKDCEDPNPLIRALA 106 (734)
T ss_pred hhhHHHHhhcccC---------------CchHHHHHHHHHHHhhccCchH----H--H-hhhhhhhccCCCCCHHHHHHH
Confidence 4566667666655 4666666666677776554322 1 2 245555554456788888877
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchh
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLER 296 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~ 296 (416)
.+.+..+-.. .+. + -...+|.+.++++ ++.+++.|+-...++ +..+.....+.|.++.|-+++.+. ++
T Consensus 107 lrtm~~l~v~-----~i~-e-y~~~Pl~~~l~d~-~~yvRktaa~~vakl--~~~~~~~~~~~gl~~~L~~ll~D~--~p 174 (734)
T KOG1061|consen 107 LRTMGCLRVD-----KIT-E-YLCDPLLKCLKDD-DPYVRKTAAVCVAKL--FDIDPDLVEDSGLVDALKDLLSDS--NP 174 (734)
T ss_pred hhceeeEeeh-----HHH-H-HHHHHHHHhccCC-ChhHHHHHHHHHHHh--hcCChhhccccchhHHHHHHhcCC--Cc
Confidence 7776655322 122 2 4789999999999 899998888777765 334566677899999999999977 88
Q ss_pred hhHHHHHHHHHHHcCChh
Q 014913 297 RASEMILTVLDLLCQCAE 314 (416)
Q Consensus 297 ~~~~~a~~~L~~La~~~~ 314 (416)
.++.+|+.+|..+.....
T Consensus 175 ~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 175 MVVANALAALSEIHESHP 192 (734)
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 999999999999987543
No 242
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=0.063 Score=54.21 Aligned_cols=39 Identities=26% Similarity=0.546 Sum_probs=31.4
Q ss_pred CCcccCcCccccC----CCceecCCcCcccHHHHHHHHHcCCCCCCC
Q 014913 7 PTFFLCPISLAIM----KDPVTVPTGITYDRESIEKWLFAGKNNTCP 49 (416)
Q Consensus 7 ~~~~~Cpic~~~~----~~Pv~l~cght~c~~ci~~~~~~~~~~~CP 49 (416)
.+.+.|+||...| ..||.+-||||.|+.|.+.... .+||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC
Confidence 4567899996555 3599999999999999988764 4677
No 243
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=91.97 E-value=1.3 Score=40.73 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhh
Q 014913 111 MQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLV 190 (416)
Q Consensus 111 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i 190 (416)
....|+..|.-++--++..|..+.+..++..|+.+|+... .+.++..++.+|..+-.+...+.+..
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~--------------~~~i~~a~L~tLv~iLld~p~N~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN--------------PPAIQSACLDTLVCILLDSPENQRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC--------------CchHHHHHHHHHHHHHHcChHHHHHH
Confidence 4566888888888878889999999999999999996542 47889889887776555554454555
Q ss_pred ccccCCccHHHHHHHhcC--CHHHHHHHHHHHHHhh
Q 014913 191 MGRNGTFVDSLTQIMQRG--TYESRAYAVLLLKSML 224 (416)
Q Consensus 191 ~~~~G~~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~ 224 (416)
.+ . +|+..++.++++. +.+++-.....|.-..
T Consensus 173 E~-~-~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 173 EE-L-NGLSTVCSLLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HH-h-CCHHHHHHHHccccccHHHhHHHHHHHHHHH
Confidence 43 6 4999999999875 5667766666665443
No 244
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.89 E-value=0.11 Score=49.20 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=38.5
Q ss_pred cccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.-.|-||+.--+|-+++||-|. .|..|-+..--. +..||+|++.+.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q--~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ--TNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHh--hcCCCccccchH
Confidence 3579999999999999999986 699997775432 568999999886
No 245
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=91.84 E-value=1.3 Score=38.01 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=73.4
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC----cc
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG----RN 272 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~----~n 272 (416)
.+..+.++|++++.+.|..++..+...+.............-.+..|+.+|+......+++.+..+|..|...- +.
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 67778899999999999999999988886643333222233478899999987646788888888888775322 32
Q ss_pred hHHHHh---hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 273 RIKGVE---AGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 273 ~~~i~~---~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
.+++.- .+.|+.+++++.. ....+.++.+|..|-.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 333322 2345555555543 2456677777776644
No 246
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.83 E-value=3.9 Score=40.85 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=119.5
Q ss_pred ccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh-ccC---CChHHHHHHHHHHHHhCC-CC
Q 014913 197 FVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL-HDH---ISQQASKSALEVLVNICP-WG 270 (416)
Q Consensus 197 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~---~~~~~~~~A~~aL~nLs~-~~ 270 (416)
.+..++.+..+. +...+..++..+..+........ .. ...+..+..-+ ... ......+..+|....|.. ++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 566677776554 57778888888888874421111 11 13455555444 222 122333444455555433 22
Q ss_pred cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhh-------------HHHHHhcCCchHHHHHHHHhc
Q 014913 271 RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEG-------------RAELLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 271 ~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~-------------~~~i~~~~~~v~~Lv~~l~~~ 336 (416)
..- ...+..|+++|.+. ++...++..+..|... ++- |+++.. ..+|.|++.....
T Consensus 267 ~~~-----~~~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 267 PLA-----TELLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA 335 (415)
T ss_pred chH-----HHHHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc
Confidence 111 12466788888653 5677788888888766 332 455555 5688888877666
Q ss_pred ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCCCccccccC
Q 014913 337 SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPCVPENLRSLF 414 (416)
Q Consensus 337 ~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~~~~~~~ 414 (416)
+...+.....+|..+-.+-+.+-...++ .-.+|.|++-|..+ +...+..+-.+|..+-+.. .+.+..|+.++.
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l--~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI 408 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVPKSVLLPEL--PTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA--PELISEHLSSLI 408 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHH
Confidence 6678899999999999987742222222 34888888888664 6667777777776665522 344555665543
No 247
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.74 E-value=1.1 Score=37.44 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=68.2
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
.++..|.+.|.+.++.++-.|+.+|-.+..+.+. .+..++.+...+..|+.++........|+++..++........+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3456677778778889999999999999998874 688899999999999999977568899999999999888876666
Q ss_pred CC
Q 014913 404 PC 405 (416)
Q Consensus 404 ~~ 405 (416)
|-
T Consensus 116 ~~ 117 (144)
T cd03568 116 PS 117 (144)
T ss_pred cc
Confidence 64
No 248
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.71 E-value=11 Score=34.77 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=69.1
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~ 317 (416)
..|-.|++-+..+ +.-.|..++.++..| ...-+||.|.+.|.+....+.++..|+.+|..++.
T Consensus 187 eaI~al~~~l~~~-SalfrhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------ 249 (289)
T KOG0567|consen 187 EAINALIDGLADD-SALFRHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------ 249 (289)
T ss_pred HHHHHHHHhcccc-hHHHHHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------
Confidence 4677888888888 888888999988865 33457899999998776578899999999998865
Q ss_pred HHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHh
Q 014913 318 ELLKHGAGLAIVSKKILRVSQVASERAVRILLSIS 352 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~ 352 (416)
+.++..|.+++....+-+++.|..+|--+-
T Consensus 250 -----e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 -----EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred -----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 345666766555445566777776665443
No 249
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=91.66 E-value=2 Score=45.82 Aligned_cols=187 Identities=16% Similarity=0.142 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhh---------HHhh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 014913 98 ITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKR---------CLES---AGAVEFLASFVTNSNAMEESPEGFDNLHES 165 (416)
Q Consensus 98 i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~---------~i~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~ 165 (416)
...++..| ++|+.-..|...+.-+..+++..+. ...+ ...+|.|++-.... .
T Consensus 817 a~klld~L-s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~---------------~ 880 (1030)
T KOG1967|consen 817 AEKLLDLL-SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA---------------P 880 (1030)
T ss_pred HHHHHHhc-CCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC---------------C
Confidence 34555555 5555555555555555555442111 1111 26788999888743 1
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQ 245 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 245 (416)
...+..=+.+|.+.-.+-.. ..+.-+.+ ..+|.|++.|+-+|..+|..+..+|.-+......-...-.+ -.+|.+..
T Consensus 881 ~~~K~~yl~~LshVl~~vP~-~vllp~~~-~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLs 957 (1030)
T KOG1967|consen 881 GSQKHNYLEALSHVLTNVPK-QVLLPQFP-MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLS 957 (1030)
T ss_pred ccchhHHHHHHHHHHhcCCH-Hhhccchh-hHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHh
Confidence 23344444455544333221 22333334 47788888888899999999999998876554433222122 36677776
Q ss_pred HhccCCC--hHHHHHHHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHH
Q 014913 246 VLHDHIS--QQASKSALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTV 305 (416)
Q Consensus 246 lL~~~~~--~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~ 305 (416)
+=++..+ ..+++.|+.+|..|.. .+.+.-.-.+..++.+|+..|.+. -.-+++.|+.+
T Consensus 958 ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 958 LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK--KRLVRKEAVDT 1018 (1030)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH--HHHHHHHHHHH
Confidence 6665412 6899999999999998 565554555566889999999876 56677777643
No 250
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.50 E-value=9.1 Score=40.27 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 341 SERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 341 ~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
++.-+.++...+..-++ + .+.+|+.|+.++.+. ++ ..|...|.-++++...-|
T Consensus 376 RqlLiktih~cav~Fp~--~-----aatvV~~ll~fisD~-N~---~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFPE--V-----AATVVSLLLDFISDS-NE---AAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHHHHHhhcChH--H-----HHHHHHHHHHHhccC-CH---HHHHHHHHHHHHHHHhCc
Confidence 45555666665555443 2 346889999999654 33 345556666666544444
No 251
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.40 E-value=1.7 Score=35.89 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=66.5
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHhccC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV--DNSMKTKDKAREVLKLHARAWKN 402 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~--~~~~~~k~~A~~ll~~l~~~~~~ 402 (416)
++..|-+.|.+.++.++..|+.+|-.+..+.+. .+..++.....+..|+.++.. ..++.+|+++..++........+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 455677778888889999999999999998874 578888887888889999965 35778999999999988887776
Q ss_pred C-CCCC
Q 014913 403 S-PCVP 407 (416)
Q Consensus 403 ~-~~~~ 407 (416)
. |..+
T Consensus 117 ~~~~~~ 122 (133)
T cd03561 117 HSEDLP 122 (133)
T ss_pred CCccch
Confidence 5 5544
No 252
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.34 E-value=7.3 Score=36.93 Aligned_cols=169 Identities=15% Similarity=0.058 Sum_probs=108.6
Q ss_pred ccHHHH-HHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC-C-cch
Q 014913 197 FVDSLT-QIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPW-G-RNR 273 (416)
Q Consensus 197 ~i~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~-~n~ 273 (416)
.+..|+ ..+++.+..+|+.|...|+-++-.+. .... ..++.+...++.+ +.+++..|+.+|..+... + +.-
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~--~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK--EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH--HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhc
Confidence 454444 66788899999999999999987643 2222 3578888888888 899999999999997542 2 221
Q ss_pred HH-------HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc----ChhhhH
Q 014913 274 IK-------GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV----SQVASE 342 (416)
Q Consensus 274 ~~-------i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~----~~~~~~ 342 (416)
.. .-....+..+.+.+.+. +++++..|+..++-|-..+.... . ...+..|+-.-.+. +...++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHH
Confidence 11 12345777888888887 78899999999998865442221 0 22333444322222 123333
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcC
Q 014913 343 RAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVD 380 (416)
Q Consensus 343 ~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~ 380 (416)
.-...+-..|..+. ..++....+.++.+..+....
T Consensus 175 ~L~~Ffp~y~~s~~---~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASSSP---ENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHhCc
Confidence 33334444555443 345666778888888877653
No 253
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.30 E-value=3.2 Score=42.59 Aligned_cols=89 Identities=17% Similarity=0.252 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHH
Q 014913 208 GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILI 286 (416)
Q Consensus 208 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv 286 (416)
|+...+.-|+..|...-.+.... . ..+|..+++|..++ +..+|..|...|..+|.+. +.... ++..|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l----~-~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~ 102 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDL----Q-EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLV 102 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGG----H-HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhh----H-HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHH
Confidence 68899999999999886553332 2 25899999999999 9999999999999999864 45554 467899
Q ss_pred HHhhcccchhhhHHHHHHHHHHH
Q 014913 287 DLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 287 ~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
+||..+ ++.-...+-.+|..|
T Consensus 103 QlL~td--d~~E~~~v~~sL~~l 123 (556)
T PF05918_consen 103 QLLQTD--DPVELDAVKNSLMSL 123 (556)
T ss_dssp HHTT-----HHHHHHHHHHHHHH
T ss_pred HHHhcc--cHHHHHHHHHHHHHH
Confidence 999876 443333333444333
No 254
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=91.26 E-value=4.2 Score=37.79 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=99.1
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc----CCHHHHHHHHHHHHHhhcccCchhhHhhhhh-HH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR----GTYESRAYAVLLLKSMLEVAEPMQLISLRQE-LF 240 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i 240 (416)
++.+--++-+++-+..+......+-. ..++....+..++.. .....+--+.+++.|+-.+......+....+ .|
T Consensus 77 ~~~~fP~lDLlRl~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i 155 (268)
T PF08324_consen 77 PESRFPALDLLRLAALHPPASDLLAS-EDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSI 155 (268)
T ss_dssp CCC-HHHHHHHHHHCCCHCHHHHHHS-TTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCH
T ss_pred CccchhHHhHHHHHHhCccHHHHHhc-cccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchH
Confidence 45567777788877777665433322 221124455555543 3677788899999998777667766665544 34
Q ss_pred HHHHHHhccCC---ChHHHHHHHHHHHHhCCCCc-ch-HHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh
Q 014913 241 VEVIQVLHDHI---SQQASKSALEVLVNICPWGR-NR-IKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 241 ~~Lv~lL~~~~---~~~~~~~A~~aL~nLs~~~~-n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~ 315 (416)
...+..+.... +..++.+++..++|++..-. ++ ..=.....+..+++.+.....++++...++.+|.+|...+..
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 44444443331 57888899999999975221 11 111122245666664433323789999999999999987766
Q ss_pred HHHHHhcCCchHHHHH
Q 014913 316 RAELLKHGAGLAIVSK 331 (416)
Q Consensus 316 ~~~i~~~~~~v~~Lv~ 331 (416)
....... -++...+.
T Consensus 236 ~~~~~~~-l~~~~~~~ 250 (268)
T PF08324_consen 236 AKQLAKS-LDVKSVLS 250 (268)
T ss_dssp HHHHCCC-CTHHHHHH
T ss_pred HHHHHHH-cChHHHHH
Confidence 6666653 33444433
No 255
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.25 E-value=0.78 Score=41.42 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhC-------cHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh-HHHHHhcCC
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAG-------AVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG-RAELLKHGA 324 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G-------~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~-~~~i~~~~~ 324 (416)
..-+.-|+.+|..||..+.|..-+..-+ .+..|+++|.... +...+|-|+.+|.+|+..++. ...+..+.+
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e-~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRE-DQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4668899999999999999887665433 4556666665543 788999999999999987654 335555689
Q ss_pred chHHHHHHHHhc
Q 014913 325 GLAIVSKKILRV 336 (416)
Q Consensus 325 ~v~~Lv~~l~~~ 336 (416)
+|..|+.++...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999987643
No 256
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.17 E-value=18 Score=36.26 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCChhh---hhhhhccccCCccHHHHHHHhcC-------CHHHHHHHHHHHHHhhcccCchhh-Hhhhh
Q 014913 169 VDEALSILCNLKISELG---LKSLVMGRNGTFVDSLTQIMQRG-------TYESRAYAVLLLKSMLEVAEPMQL-ISLRQ 237 (416)
Q Consensus 169 ~~~A~~~L~~l~~~~~~---~~~~i~~~~G~~i~~Lv~lL~~~-------~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~ 237 (416)
+-.|+-....+..+++- .++.+-+ + =+.+++-++|.++ +.-.+.-+..+|..+|...+-... -+.
T Consensus 28 ~fAaLllVTK~vK~~Di~a~~kk~vfe-A-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v-- 103 (698)
T KOG2611|consen 28 RFAALLLVTKFVKNDDIVALNKKLVFE-A-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV-- 103 (698)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhHHH-H-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--
Confidence 44455555566665542 2344443 3 3788888898763 345667788888888877552221 122
Q ss_pred hHHHHHHHHhccCCChH------HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 238 ELFVEVIQVLHDHISQQ------ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~------~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
..||.|..++..+.+++ +.+.+-.+|+.++.++.....++..|+|+.+.++-.... ..--.+.++.+|.-+..
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~-~~~d~alal~Vlll~~~ 182 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD-GSHDMALALKVLLLLVS 182 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC-CchhHHHHHHHHHHHHH
Confidence 47999999998553444 778899999999999999999999999999998766541 22223444444444433
Q ss_pred ----ChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHH
Q 014913 312 ----CAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLS 350 (416)
Q Consensus 312 ----~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~ 350 (416)
+++.-..+.. .|..+-+-+.......+-..+.+|..
T Consensus 183 ~~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~ 222 (698)
T KOG2611|consen 183 KLDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSA 222 (698)
T ss_pred hcccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2333333322 13333333333334455566666664
No 257
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.14 E-value=0.08 Score=54.62 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=50.6
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcC-CCCCCCCCCccccCCCCCCCchhHHHHHHHHHH
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG-KNNTCPMTKQVLSSECELTPNHTLRRLIQSWCT 76 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~ 76 (416)
..++.||||....++|+.++|-|-||+.|+...|... +...||+|+.... ...........++++++..
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e-K~s~~Es~r~sq~vqe~lk 88 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE-KRSLRESPRFSQLSKESLK 88 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhh-hhhccccchHHHHHHHhcC
Confidence 3457899999999999999999999999998887643 2578999986665 3333334444556655443
No 258
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.06 E-value=0.5 Score=42.62 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhcC-------cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESAG-------AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS 182 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G-------~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~ 182 (416)
.-|..|+.+|.+++-... |-+.|...+ .+..|+++|... +++-.+|-|+.+|.+|+..
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~--------------e~~v~REfAvvlL~~La~~ 203 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMR--------------EDQVCREFAVVLLSNLAQG 203 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccc--------------cchhHHHHHHHHHHHHhcc
Confidence 567889999999987643 777766654 455566666655 3688999999999999998
Q ss_pred hhhhhhhhccccCCccHHHHHHHhcC
Q 014913 183 ELGLKSLVMGRNGTFVDSLTQIMQRG 208 (416)
Q Consensus 183 ~~~~~~~i~~~~G~~i~~Lv~lL~~~ 208 (416)
++.....+..+. +.|..|+.++...
T Consensus 204 ~~~~~r~iA~q~-~~i~~Li~FiE~a 228 (257)
T PF12031_consen 204 DEAAARAIAMQK-PCISHLIAFIEDA 228 (257)
T ss_pred cHHHHHHHHHhh-chHHHHHHHHHHH
Confidence 877766676667 4999999999754
No 259
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.86 E-value=16 Score=35.28 Aligned_cols=213 Identities=10% Similarity=0.074 Sum_probs=142.6
Q ss_pred hHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh-----hhhhccccCCccHHHHHHH
Q 014913 131 RCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL-----KSLVMGRNGTFVDSLTQIM 205 (416)
Q Consensus 131 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~-----~~~i~~~~G~~i~~Lv~lL 205 (416)
..+.+.|.+..|+..|..- +-+.+..+..+..++-....+. ...+..+ -+.++..|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L---------------~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~----~peil~~L 130 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKL---------------DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH----RPEILDIL 130 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS----------------HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT------THHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhC---------------CCcccccHHHHHHHHHhhccCCCCCchHHHHHhC----CHHHHHHH
Confidence 3355668999999999876 4778888888887776543222 2233322 12333333
Q ss_pred hc--CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh-CCCCcchHHHHhh---
Q 014913 206 QR--GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI-CPWGRNRIKGVEA--- 279 (416)
Q Consensus 206 ~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL-s~~~~n~~~i~~~--- 279 (416)
-. +++++--.+-..|..+...+.-.+.+.. ...+..+.+..+.+ +-++...|..++..| ..+......+...
T Consensus 131 ~~gy~~~dial~~g~mlRec~k~e~l~~~iL~-~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d 208 (335)
T PF08569_consen 131 LRGYENPDIALNCGDMLRECIKHESLAKIILY-SECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYD 208 (335)
T ss_dssp HHGGGSTTTHHHHHHHHHHHTTSHHHHHHHHT-SGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHH
T ss_pred HHHhcCccccchHHHHHHHHHhhHHHHHHHhC-cHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22 3677788888899999877554554444 46788899999988 899999999999985 5555544444443
Q ss_pred CcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH---HHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCC
Q 014913 280 GAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA---ELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 280 G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~---~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~ 356 (416)
..+...-.||.++ +--++..++..|..|-.+..+.. ..+.+..-+..++.+|.+.+...|-.|..+.--...+..
T Consensus 209 ~ff~~~~~Ll~s~--NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 209 RFFQKYNKLLESS--NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHCT-S--SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHccCC--CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 4566778888887 78889999999999998877755 445555666777776666677899999998887666553
Q ss_pred -ChHHHHHHHh
Q 014913 357 -TNSVLQEMLQ 366 (416)
Q Consensus 357 -~~~~~~~i~~ 366 (416)
.+.+...+.+
T Consensus 287 K~~~I~~iL~~ 297 (335)
T PF08569_consen 287 KPPPIVDILIK 297 (335)
T ss_dssp -BHHHHHHHHH
T ss_pred CChHHHHHHHH
Confidence 3445554443
No 260
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=90.77 E-value=0.35 Score=47.73 Aligned_cols=186 Identities=10% Similarity=0.033 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc----cCc-h-hhHhhhhhHH
Q 014913 167 RPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV----AEP-M-QLISLRQELF 240 (416)
Q Consensus 167 ~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~----~~~-~-~~~~~~~g~i 240 (416)
-++..|++++.-+..+..-.....- .. ++...++..|.+..-..|+.++|++++++.. ..+ . ..-....-.|
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~f-v~-~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIF-VA-DAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHH-HH-HHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 3555666666666655543322211 12 3566666777666788899999999999832 111 0 1111111123
Q ss_pred HHHHHHhc--cCCChHHHHHHHHHHHHhCCCCc----chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh
Q 014913 241 VEVIQVLH--DHISQQASKSALEVLVNICPWGR----NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 241 ~~Lv~lL~--~~~~~~~~~~A~~aL~nLs~~~~----n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~ 314 (416)
..+++... +-.+..++.+|.++|.|+..--+ -.......|.+..++.-.... ....++-+++-++.||-+++.
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcCcc
Confidence 33333322 11256889999999999876322 111223344444444333222 266899999999999998765
Q ss_pred hHHHHHhc-CCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCC
Q 014913 315 GRAELLKH-GAGLAIVSKKILRVS-QVASERAVRILLSISKFS 355 (416)
Q Consensus 315 ~~~~i~~~-~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~ 355 (416)
-.-+-..- ....+.|..++.+.+ =+++-+|+.+|..-....
T Consensus 563 ~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 563 LPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred ccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCcc
Confidence 42211111 134566666555443 378888998887766543
No 261
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.46 E-value=1.8 Score=35.68 Aligned_cols=82 Identities=16% Similarity=0.221 Sum_probs=66.4
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHhccCC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMK-TKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~-~k~~A~~ll~~l~~~~~~~ 403 (416)
++..|-+.|.+.++.++..|+.+|-.+..+.+. .+..++.+...+..|..++....+.. .|+++..++..-.....+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 445677777778889999999999999988764 68888999999999999997754444 8999999998888877776
Q ss_pred CCCC
Q 014913 404 PCVP 407 (416)
Q Consensus 404 ~~~~ 407 (416)
|-.+
T Consensus 117 ~~~~ 120 (133)
T smart00288 117 PDLS 120 (133)
T ss_pred CCch
Confidence 6544
No 262
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=90.45 E-value=0.44 Score=47.03 Aligned_cols=180 Identities=14% Similarity=0.054 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC----CCcchHHHHhh--C-cHHH
Q 014913 212 SRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP----WGRNRIKGVEA--G-AVSI 284 (416)
Q Consensus 212 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~----~~~n~~~i~~~--G-~v~~ 284 (416)
++..|..++.-+.-++..+....--..+...+...|.+. ....++.++|++.|++. +-.+.....+. | .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 444555555555455444433333335666677777766 67899999999999864 22232222221 1 2222
Q ss_pred HHHHhhc-ccchhhhHHHHHHHHHHHcCChh-----hHHHHHhcCCchHHHHHHH-HhcChhhhHHHHHHHHHHhcCCCC
Q 014913 285 LIDLLLD-SSLERRASEMILTVLDLLCQCAE-----GRAELLKHGAGLAIVSKKI-LRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 285 Lv~lL~~-~~~~~~~~~~a~~~L~~La~~~~-----~~~~i~~~~~~v~~Lv~~l-~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
+++.-.. ..+...++.+|..+|.|+...-. +-..+.+ +.+..+.... ..+..+++-+++.++.||.++..=
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 3332221 11256788999999999876432 1112222 2222222211 123458899999999999987641
Q ss_pred hHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 014913 358 NSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKL 395 (416)
Q Consensus 358 ~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~ 395 (416)
.....-...-+++.|..++.+..+-+.|-.|+.+|..
T Consensus 564 -~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 564 -PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred -cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 1112222345788888888776677888888887754
No 263
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.16 E-value=14 Score=33.58 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=84.5
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
+++.+...+..|..++.++. ..+ + -.++.|+.+.+.+..+.+.-+...+..+-...+ +.. +.+..++
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~---~~~---~-~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-----~~L~~~L 80 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN---VCV---P-PVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-----PFLQPLL 80 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc---cch---h-HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-----HHHHHHH
Confidence 68999999999999998762 122 2 266677777777777775566666666654321 111 4455554
Q ss_pred HH--------hcc-CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHh-hcccchhhhHHHHHHHHHHHcC
Q 014913 245 QV--------LHD-HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLL-LDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 245 ~l--------L~~-~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~~~a~~~L~~La~ 311 (416)
.. ..+ ....+..-..+.++..+|...++ .-...++.+...| ... ++.++..++.+|..|+.
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~--~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC--DEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHH
Confidence 44 111 11345555667788889887766 2234688888888 555 77888899999999983
No 264
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.14 E-value=27 Score=36.71 Aligned_cols=116 Identities=12% Similarity=0.098 Sum_probs=81.1
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHH
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIK 275 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 275 (416)
+.+..|+.-..+.+..+|-+.+.+|..++........ ....+.+..|..-+.+. .+.++..|+.+|..+-..+.+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de-- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE-- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC--
Confidence 3888888888889999999999999999863222222 23336777777767777 7899999999999987543221
Q ss_pred HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 014913 276 GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK 321 (416)
Q Consensus 276 i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 321 (416)
+..++-.++.+++.++ +++++.. +|.+++.++..+..|++
T Consensus 161 --e~~v~n~l~~liqnDp-S~EVRRa---aLsnI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDP-SDEVRRA---ALSNISVDNSTLPCIVE 200 (892)
T ss_pred --cccHHHHHHHHHhcCC-cHHHHHH---HHHhhccCcccchhHHH
Confidence 1235677888888875 5666654 46677766665555544
No 265
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.73 E-value=5.6 Score=35.64 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhh-hhhh
Q 014913 111 MQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELG-LKSL 189 (416)
Q Consensus 111 ~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~-~~~~ 189 (416)
-...|+..|+-++++ ++.|..+.++..---|-..|...+. +.. -.-++-.++.++..|..+++. ..++
T Consensus 116 RvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~--------~~~--fEyLRltsLGVIgaLvkNdsq~vi~f 184 (315)
T COG5209 116 RVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSS--------NSK--FEYLRLTSLGVIGALVKNDSQYVIKF 184 (315)
T ss_pred HHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhcccc--------CCc--cceeeehHHHHHHHHHhCCCHHHHHH
Confidence 345677777767665 5689999988755555566643311 001 234677788888888776542 2333
Q ss_pred hccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhh-------hHHHHHHH-HhccCCChHHHHHHHH
Q 014913 190 VMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQ-------ELFVEVIQ-VLHDHISQQASKSALE 261 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------g~i~~Lv~-lL~~~~~~~~~~~A~~ 261 (416)
+.. . +.+|..++++..|+.-.+.-|+.++..+-.++..-.-+...- .++..++. +.+.+ +....+.+++
T Consensus 185 Llt-T-eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iR 261 (315)
T COG5209 185 LLT-T-EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIR 261 (315)
T ss_pred HHh-h-hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHH
Confidence 332 4 599999999999999999999999998877766554443211 23333333 34456 7889999999
Q ss_pred HHHHhCCCCcchHHHH
Q 014913 262 VLVNICPWGRNRIKGV 277 (416)
Q Consensus 262 aL~nLs~~~~n~~~i~ 277 (416)
+-..||..+..|..+.
T Consensus 262 cYlRLsd~p~aR~lL~ 277 (315)
T COG5209 262 CYLRLSDKPHARALLS 277 (315)
T ss_pred HheeecCCHhHHHHHh
Confidence 9999999888776553
No 266
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=0.39 Score=46.26 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=27.5
Q ss_pred CcccCcCccccCC--Cce-ecCCcCcccHHHHHHHHHc
Q 014913 8 TFFLCPISLAIMK--DPV-TVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 8 ~~~~Cpic~~~~~--~Pv-~l~cght~c~~ci~~~~~~ 42 (416)
..|.|.||.+-.. +-+ .++|+|.||+.|+..|+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 4588999996554 344 4699999999999999864
No 267
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=7 Score=41.08 Aligned_cols=231 Identities=12% Similarity=0.136 Sum_probs=125.8
Q ss_pred HHHHHHHHHh--c--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCC---CC---CCCCCCCCCc
Q 014913 97 QITKLLNEAA--K--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEE---SP---EGFDNLHESS 166 (416)
Q Consensus 97 ~i~~lv~~l~--~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~---~~---~~~~~~~~~~ 166 (416)
.+-.|...+. . ++..+.--+.-++..+..+++-+.. .|..+.++|.+.+..-. .| ..++ +|
T Consensus 204 Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL~stssaV~fEaa~tlv~lS~----~p 274 (948)
T KOG1058|consen 204 ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLLSSTSSAVIFEAAGTLVTLSN----DP 274 (948)
T ss_pred HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHHhcCCchhhhhhcceEEEccC----CH
Confidence 4445544443 2 3566666677777777766644333 25567777776632111 01 2222 57
Q ss_pred chHHHHHHHHHhcCCC-hhhhhhhhccc-------------cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh
Q 014913 167 RPVDEALSILCNLKIS-ELGLKSLVMGR-------------NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL 232 (416)
Q Consensus 167 ~~~~~A~~~L~~l~~~-~~~~~~~i~~~-------------~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 232 (416)
...+.|+..+..|... .+++.++|... . +.+--++.+|++++.+++..+..+...|+.... -..
T Consensus 275 ~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN-ved 352 (948)
T KOG1058|consen 275 TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN-VED 352 (948)
T ss_pred HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc-HHH
Confidence 7777777766665543 23333333210 1 134455667778889999999888888876532 211
Q ss_pred HhhhhhHHHHHHHHh-c---c--CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHH
Q 014913 233 ISLRQELFVEVIQVL-H---D--HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVL 306 (416)
Q Consensus 233 ~~~~~g~i~~Lv~lL-~---~--~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L 306 (416)
.+..|-+=+ + . +.+..-|+.-..+|...+..-.. +.+.+|+.|++.|.+. ++......+..+
T Consensus 353 ------iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~aatvV~~ll~fisD~--N~~aas~vl~Fv 420 (948)
T KOG1058|consen 353 ------IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VAATVVSLLLDFISDS--NEAAASDVLMFV 420 (948)
T ss_pred ------HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HHHHHHHHHHHHhccC--CHHHHHHHHHHH
Confidence 112222211 1 1 11335577778888887763332 3345899999999887 665555555555
Q ss_pred HHHcC-ChhhHHHHHhcCCchHHHHHHHHh-cChhhhHHHHHHHHHHhcCCC
Q 014913 307 DLLCQ-CAEGRAELLKHGAGLAIVSKKILR-VSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 307 ~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~-~~~~~~~~a~~~L~~L~~~~~ 356 (416)
...-. .+.-|..+++ .|++.+.. .+.+.-+.|++++..-|....
T Consensus 421 rE~iek~p~Lr~~ii~------~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 421 REAIEKFPNLRASIIE------KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHhCchHHHHHHH------HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 54433 4544555554 33332221 144556666666665555443
No 268
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.51 E-value=8.7 Score=41.96 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=84.5
Q ss_pred HhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 233 ISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 233 ~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
.+++ ++|..|...|++. +..++=.|+.-+..+....+ ..+++. +|...++++.-.. ++.....++.+|+.|+.-
T Consensus 337 eivE-~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e-~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 337 EIVE-FVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAE-DDSAWHGACLALAELALR 410 (1133)
T ss_pred HHHH-HHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCC-chhHHHHHHHHHHHHHhc
Confidence 3444 7899999999988 89999999999999987665 344443 6777777554432 577888999999999875
Q ss_pred hhhHHHHHhcCCchHHHHHHHH--------hcChhhhHHHHHHHHHHhcCCCC
Q 014913 313 AEGRAELLKHGAGLAIVSKKIL--------RVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 313 ~~~~~~i~~~~~~v~~Lv~~l~--------~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
.--.....+ ..+|.+++.+. +.+..+++.|+-+.|.+++....
T Consensus 411 GlLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~ 461 (1133)
T KOG1943|consen 411 GLLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSP 461 (1133)
T ss_pred CCcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCCh
Confidence 443333333 45666665543 12457899999999999998763
No 269
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=89.29 E-value=29 Score=37.28 Aligned_cols=255 Identities=10% Similarity=0.061 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHhc-ChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhh
Q 014913 110 QMQIKCLKKLRSIAAE-NETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKS 188 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 188 (416)
+.+.++......++.. +...+..+...-.+|.+-.+..+. +..++...+..+..+.---. ..+
T Consensus 370 e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~---------------~~~vr~a~a~~~~~~~p~~~-k~~ 433 (759)
T KOG0211|consen 370 EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN---------------ALHVRSALASVITGLSPILP-KER 433 (759)
T ss_pred hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc---------------cchHHHHHhccccccCccCC-cCc
Confidence 4444444445554442 223445566666667776666655 46666666655555442211 112
Q ss_pred hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 189 LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 189 ~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
-+. . ..+.++..++...++++.+..+.+..+-...+.-..-....-.+|.++.+-... .+..+.+..+.+..++.
T Consensus 434 ti~--~--llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 434 TIS--E--LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLAL 508 (759)
T ss_pred Ccc--c--cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHH
Confidence 222 2 677778888888999999988877666444333322333446788888888777 88999999999988876
Q ss_pred CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHH
Q 014913 269 WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRIL 348 (416)
Q Consensus 269 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L 348 (416)
... ..+.+.-.-+.+..-+.+. ...+++.|+..|..++..-...... . ..++.+.......+-..+...+..+
T Consensus 509 q~~--~~~~~~~~~~l~~~~l~d~--v~~Ir~~aa~~l~~l~~~~G~~w~~-~--~~i~k~L~~~~q~~y~~R~t~l~si 581 (759)
T KOG0211|consen 509 QLG--VEFFDEKLAELLRTWLPDH--VYSIREAAARNLPALVETFGSEWAR-L--EEIPKLLAMDLQDNYLVRMTTLFSI 581 (759)
T ss_pred hhh--hHHhhHHHHHHHHhhhhhh--HHHHHHHHHHHhHHHHHHhCcchhH-H--HhhHHHHHHhcCcccchhhHHHHHH
Confidence 544 2233222222233333333 4467777777777776532211111 1 1233333322222112222222233
Q ss_pred HHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 349 LSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 349 ~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
..|+.-.++ ++...-.++.+..+.. +..+..|-+++..|..+.+
T Consensus 582 ~~la~v~g~-----ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 582 HELAEVLGQ-----EITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILK 625 (759)
T ss_pred HHHHHHhcc-----HHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHh
Confidence 333322221 2222345555555553 3466666666666665555
No 270
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.12 E-value=0.18 Score=45.30 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=32.2
Q ss_pred cCcCccccC-CCcee-cCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 11 LCPISLAIM-KDPVT-VPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 11 ~Cpic~~~~-~~Pv~-l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
.|-.|...- .+|.- +.|+|.||..|...-. ...||.|++.+. -..+..|
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir-~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIR-IIQLNRS 55 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCC----ccccccccceee-eeecccc
Confidence 455555221 66764 5999999999964421 348999999976 4444443
No 271
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=88.89 E-value=36 Score=36.78 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=118.8
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQ 245 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 245 (416)
+-++..|++++.-.+ ..+.+....+ +.+..|..+....+.++......+|...+..+...... .+.-..|.++.
T Consensus 505 ~~~ki~a~~~~~~~~----~~~vl~~~~p-~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~ 578 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYC----KVKVLLSLQP-MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTIN 578 (1005)
T ss_pred CchhHHHHHHHHhcc----Cceeccccch-HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHH
Confidence 556777777777555 1223333346 37788888887778888888888999888775544433 33356677666
Q ss_pred Hhc-cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc--chhhhHHHHHHHHHHHcCCh-hh-HHHHH
Q 014913 246 VLH-DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS--LERRASEMILTVLDLLCQCA-EG-RAELL 320 (416)
Q Consensus 246 lL~-~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~--~~~~~~~~a~~~L~~La~~~-~~-~~~i~ 320 (416)
+.. ...++.+...+--++..|+....|...+.+. .||.|+..|.... .......-++.+|..+.+.. .- -..+.
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~ 657 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI 657 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH
Confidence 653 2226777777777777787766677777665 7999999998762 12455666677777555532 22 22333
Q ss_pred hcCCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCCC
Q 014913 321 KHGAGLAIVSKKILRVS-QVASERAVRILLSISKFSA 356 (416)
Q Consensus 321 ~~~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~ 356 (416)
. .+.|++.+...+.+ ...-+.+-.+|..+-....
T Consensus 658 ~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 658 C--YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred H--HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 3 67888888766554 3667777778887766543
No 272
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=88.75 E-value=1.7 Score=36.16 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=65.8
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHH---HHHHHHHHHHHHHHhcc
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMK---TKDKAREVLKLHARAWK 401 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~---~k~~A~~ll~~l~~~~~ 401 (416)
++..|.+.|.+.++.++..|+.+|-.+..+.+. .+..++.+...+..|..++.+..... +|+++..++......+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 455677888888899999999999999988764 68888888899999999887655555 79999999998888776
Q ss_pred CCCCC
Q 014913 402 NSPCV 406 (416)
Q Consensus 402 ~~~~~ 406 (416)
..|-.
T Consensus 122 ~~~~~ 126 (140)
T PF00790_consen 122 SDPEL 126 (140)
T ss_dssp TSTTG
T ss_pred CCCCc
Confidence 55543
No 273
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.70 E-value=25 Score=38.69 Aligned_cols=257 Identities=17% Similarity=0.201 Sum_probs=148.2
Q ss_pred HHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccC
Q 014913 116 LKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNG 195 (416)
Q Consensus 116 l~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G 195 (416)
..+|..+.+.+.+|...+.++.++..|+.++-++ +-+..-++++..|-..+. ++ +. .
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind-----------------ehRSslLrivscLitvdp--kq-vh--h- 719 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND-----------------EHRSSLLRIVSCLITVDP--KQ-VH--H- 719 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech-----------------HHHHHHHHHHHHHhccCc--cc-cc--H-
Confidence 4567788899999999999999999999888544 234444444444433332 12 22 2
Q ss_pred CccHHHHHHHhcCC------------HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc--C------CChHH
Q 014913 196 TFVDSLTQIMQRGT------------YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD--H------ISQQA 255 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~------~~~~~ 255 (416)
+.+-.+|+.|++|- .........+++.+...+...+....++||...|...|.. + .+..+
T Consensus 720 qelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlc 799 (2799)
T KOG1788|consen 720 QELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLC 799 (2799)
T ss_pred HHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhh
Confidence 35667888887741 1234445567777765555555555566777777776631 1 01111
Q ss_pred H-HHHHHH---HHHh--CCCCcchHHH-------------HhhC---------cHHHHHHHhhcccchhhh-HH-HHHHH
Q 014913 256 S-KSALEV---LVNI--CPWGRNRIKG-------------VEAG---------AVSILIDLLLDSSLERRA-SE-MILTV 305 (416)
Q Consensus 256 ~-~~A~~a---L~nL--s~~~~n~~~i-------------~~~G---------~v~~Lv~lL~~~~~~~~~-~~-~a~~~ 305 (416)
+ -.-... +..+ |.+..|+..+ .+.| +|..|.++--..-..+.+ .| .|+..
T Consensus 800 vyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcae 879 (2799)
T KOG1788|consen 800 VYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAE 879 (2799)
T ss_pred hHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHH
Confidence 1 111122 2222 4455566543 2334 222222221110001111 11 23333
Q ss_pred HHHHcCC-----------hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 306 LDLLCQC-----------AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 306 L~~La~~-----------~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
+-.+-.+ ...++.+.. .|++..+++.++...++.+-.-...|-.+++.++. ..+.....|.++.|+
T Consensus 880 VfelednifavntPsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspf--naelltS~gcvelll 956 (2799)
T KOG1788|consen 880 VFELEDNIFAVNTPSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPF--NAELLTSAGCVELLL 956 (2799)
T ss_pred HhhcccceeeeccCCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCC--chhhhhcccHHHHHH
Confidence 3333211 113566777 79999999988888889888889999999998875 566677789999999
Q ss_pred HHHhc--CCcHHHHHHHHHHHHHHHH
Q 014913 375 LVLQV--DNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 375 ~ll~~--~~~~~~k~~A~~ll~~l~~ 398 (416)
+++.- .|+..--..|.+++..|..
T Consensus 957 eIiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 957 EIIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred HHhhhhhcCCchHhhccHHHHHHHhh
Confidence 88632 2344455667777766655
No 274
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.64 E-value=4 Score=37.93 Aligned_cols=190 Identities=18% Similarity=0.163 Sum_probs=105.1
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcC--cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 98 ITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAG--AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 98 i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G--~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+..++..+.+ .++.+.-++.-+|-++.+.+ .-..+...+ ....+..++..... ...+..+--+++
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~ml~lR 132 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSS-----------SSPPANQMLALR 132 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTT-----------TSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccC-----------CCcHHHHHHHHH
Confidence 3334444422 23556666766666655433 444444432 35555666555421 014667888999
Q ss_pred HHHhcCCChhhhhhhhccccCC-ccHHHHHHHhcC----CHHHHHHHHHHHHHhhcccCchh-hHhhhhhHHHHHHHHh-
Q 014913 175 ILCNLKISELGLKSLVMGRNGT-FVDSLTQIMQRG----TYESRAYAVLLLKSMLEVAEPMQ-LISLRQELFVEVIQVL- 247 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~-~i~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL- 247 (416)
+++|+-.+......++. .. + .+-..+..+... +..++..++.++.|++..-.... ..-.....+..++..+
T Consensus 133 ~l~NlF~~~~~~~~~~~-~~-~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~ 210 (268)
T PF08324_consen 133 LLANLFSHPPGRQLLLS-HF-DSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLS 210 (268)
T ss_dssp HHHHHTTSCCCHHHHHC-TH-HTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCH
T ss_pred HHHHhhCCCccHHHHHh-cc-cchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 99999988766544444 22 2 222222222233 68899999999999984322111 1111113566667743
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCcchHHHHh-hCcHHHHHHHhhcccchhhhHHHH
Q 014913 248 HDHISQQASKSALEVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSSLERRASEMI 302 (416)
Q Consensus 248 ~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a 302 (416)
....+.++.--++-||.+|...++....+.+ .|+-..+-..-... .++.+++.+
T Consensus 211 ~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~-~e~ri~~v~ 265 (268)
T PF08324_consen 211 REESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKS-KEPRIKEVA 265 (268)
T ss_dssp CCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHT-TSHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcc-cchHHHHHh
Confidence 3324889999999999999877766666655 44444443333322 144555443
No 275
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=88.41 E-value=33 Score=35.29 Aligned_cols=71 Identities=11% Similarity=-0.046 Sum_probs=47.8
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR 271 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 271 (416)
..|.|-..|++.-..+...+|.++..++...-... . .. ..+..|-.+|++. ....+-.|++.|..|+....
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~-~~-~~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ-F-VD-QTVSSLRTFLKST-RVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH-H-HH-HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCC
Confidence 45566666666556777788888888875431111 1 12 3567777777777 77888899999988886544
No 276
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.97 E-value=0.16 Score=40.12 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=27.5
Q ss_pred CCCCCcccCcCccccCCCcee--cCCcCcccHHHHH
Q 014913 4 IDVPTFFLCPISLAIMKDPVT--VPTGITYDRESIE 37 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~--l~cght~c~~ci~ 37 (416)
+.+.++-.|++|++.+.+++. .||||.|-..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345677889999999988774 3999999988864
No 277
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=87.94 E-value=13 Score=40.23 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=115.5
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCCh-hh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISE-LG 185 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~-~~ 185 (416)
++...|.+|+..+.....+.. -.......|.+-.++.....+. +..+...|+..|..++..- ..
T Consensus 265 ~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDa--------------N~~v~~~aa~~l~~ia~~lr~~ 329 (815)
T KOG1820|consen 265 KKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDA--------------NINVVMLAAQILELIAKKLRPL 329 (815)
T ss_pred cchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCc--------------chhHHHHHHHHHHHHHHhcchh
Confidence 346999999999999887643 1111112355555555555542 5667777877777777532 22
Q ss_pred hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHH
Q 014913 186 LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVN 265 (416)
Q Consensus 186 ~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 265 (416)
....+. +.++.|.+.+......++..+..++-.++.. ......++.+...++++ ++..+......+..
T Consensus 330 ~~~~~~----~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r 397 (815)
T KOG1820|consen 330 FRKYAK----NVFPSLLDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGK-NPQIKGECLLLLDR 397 (815)
T ss_pred hHHHHH----hhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHH
Confidence 334443 3888999999887888888777777666541 12224678888999999 88888876666555
Q ss_pred hCC-CC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 266 ICP-WG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 266 Ls~-~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
.-. .+ .+...-.-.+.+|.++....+. +.+++..|..++..+-.
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHINDT--DKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccCC--cHHHHHHHHHHHHHHHH
Confidence 432 22 2222222246788899988887 88899888888877644
No 278
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=87.81 E-value=3.8 Score=34.07 Aligned_cols=83 Identities=17% Similarity=0.167 Sum_probs=67.2
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHH
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV-----DNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~-----~~~~~~k~~A~~ll~~l~~ 398 (416)
.++..+.+.|.+.++..+-.|+.+|-.+..+.+. .+..++.+...+.-|+.++.. .....+|++...++..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGE-RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3466677778888889999999999999988774 688999999999999999953 2467899999999998888
Q ss_pred hccCCCCCC
Q 014913 399 AWKNSPCVP 407 (416)
Q Consensus 399 ~~~~~~~~~ 407 (416)
.+.+.|-|.
T Consensus 117 ~f~~~p~~~ 125 (139)
T cd03567 117 ELPHEPKIK 125 (139)
T ss_pred HhcccchHH
Confidence 776666543
No 279
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.62 E-value=30 Score=35.60 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=76.6
Q ss_pred CcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChH
Q 014913 280 GAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNS 359 (416)
Q Consensus 280 G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~ 359 (416)
|.+..+++-+.+. +..++..++.+|+.+...-..-...+- .+.+..|.+.+....+.++..|+.+|..+-....+++
T Consensus 91 ~~~~h~lRg~esk--dk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESK--DKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccCc--chhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 5566666666666 788999999999998775433333333 3666666666666667888889988888777666654
Q ss_pred HHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCC
Q 014913 360 VLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPCV 406 (416)
Q Consensus 360 ~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~ 406 (416)
.+ .+..|+.++|.+++.++|+.|.- ++...++-.|||
T Consensus 168 n~-------~~n~l~~~vqnDPS~EVRr~all---ni~vdnsT~p~I 204 (885)
T COG5218 168 NR-------IVNLLKDIVQNDPSDEVRRLALL---NISVDNSTYPCI 204 (885)
T ss_pred HH-------HHHHHHHHHhcCcHHHHHHHHHH---HeeeCCCcchhH
Confidence 44 33477888898888888876532 233333344775
No 280
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=87.56 E-value=0.15 Score=55.89 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=39.9
Q ss_pred CCcccCcCccccCC-CceecCCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 7 PTFFLCPISLAIMK-DPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 7 ~~~~~Cpic~~~~~-~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
-..+.|++|.++++ .-.+..|||.||.+|+..|+.. +..||.|+...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSIK 1198 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhhh
Confidence 34568999999999 6678899999999999999986 67899997443
No 281
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.41 E-value=1.8 Score=31.56 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhC
Q 014913 213 RAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAG 280 (416)
Q Consensus 213 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G 280 (416)
.+.|.|++.++++.+.... ...+.+.++.++++..+.....+|--|..+|.-++...+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~-lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQ-LLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHH-HHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4678999999988754444 344558999999999866477999999999999999888887776665
No 282
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.16 E-value=19 Score=37.87 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=61.8
Q ss_pred ccHHHHHHHhc----CCHHHHHHHHHHHHHhhcccCch----------hhHhhhhhHHHHHHHHhc----cCCChHHHHH
Q 014913 197 FVDSLTQIMQR----GTYESRAYAVLLLKSMLEVAEPM----------QLISLRQELFVEVIQVLH----DHISQQASKS 258 (416)
Q Consensus 197 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~----------~~~~~~~g~i~~Lv~lL~----~~~~~~~~~~ 258 (416)
.+..+..++++ .+..++..|..+++.+....... ..... ...++.|...|. .+ +.+.+..
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~-~~~~~~~ 509 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII-EKYVPYLEQELKEAVSRG-DEEEKIV 509 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhH-HHHHHHHHHHHHHHhhcc-CHHHHHH
Confidence 44445555543 46677888888887776321111 11122 246677777665 34 6688889
Q ss_pred HHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc-cchhhhHHHHHHHHHHHcCC
Q 014913 259 ALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS-SLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 259 A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~~~a~~~L~~La~~ 312 (416)
++.||.|+-. ...++.|...+... ..+..++-.|+.+|+.++..
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 9999999743 24677777777665 23567778888888877553
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.07 E-value=0.29 Score=46.65 Aligned_cols=46 Identities=11% Similarity=0.278 Sum_probs=37.2
Q ss_pred cccCcCccccCCC--ce--ecCCcCcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 9 FFLCPISLAIMKD--PV--TVPTGITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 9 ~~~Cpic~~~~~~--Pv--~l~cght~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
++.|-.|++.+-- -- -+||.|-|=-+|+..++.+.++.+||.|++.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4689999976532 22 4699999999999999988778999999843
No 284
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.88 E-value=15 Score=40.72 Aligned_cols=219 Identities=12% Similarity=0.109 Sum_probs=111.9
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC-hhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS-ELGL 186 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~-~~~~ 186 (416)
++.+|.++...|..+... +.......+ -+..+-+.|.++... .....+..++.+|..|-.. +...
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q--~i~~I~n~L~ds~qs-----------~~~~~~~~rl~~L~~L~~~~~~e~ 732 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQ--RIDDIFNSLLDSFQS-----------SSSPAQASRLKCLKRLLKLLSAEH 732 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHH--HHHHHHHHHHHHHhc-----------cchHHHHHHHHHHHHHHHhccHHH
Confidence 568888888888888776 222222221 123333333322100 0233455555544433321 1223
Q ss_pred hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhc----ccCchhhHhhhhhHHHHHHHHhccCC---ChHHHHHH
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLE----VAEPMQLISLRQELFVEVIQVLHDHI---SQQASKSA 259 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~Lv~lL~~~~---~~~~~~~A 259 (416)
..++. ..|+.++=.++..+...|++|...|..+.. .++.+.. . ...|...+.++..+. +...+...
T Consensus 733 ~~~i~----k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~ 805 (1176)
T KOG1248|consen 733 CDLIP----KLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASD 805 (1176)
T ss_pred HHHHH----HHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 45554 367777666677799999999999999872 1111111 0 123444444444320 22222221
Q ss_pred HHHHHHhCCCCcchHHHHhhCc----HHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHH
Q 014913 260 LEVLVNICPWGRNRIKGVEAGA----VSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKIL 334 (416)
Q Consensus 260 ~~aL~nLs~~~~n~~~i~~~G~----v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~ 334 (416)
+-++..+.. +...+.+.+. +.-+...|.+. .+++...|++.+..++. .++....-.. +..++.+..++.
T Consensus 806 Ivai~~il~---e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~ 879 (1176)
T KOG1248|consen 806 IVAITHILQ---EFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSH 879 (1176)
T ss_pred HHHHHHHHH---HHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHH
Confidence 333333332 2222333333 44444445566 78999999999999876 5655554444 345666666444
Q ss_pred hcChhhhHHHHHHHHHHhc
Q 014913 335 RVSQVASERAVRILLSISK 353 (416)
Q Consensus 335 ~~~~~~~~~a~~~L~~L~~ 353 (416)
......+......|-.|.+
T Consensus 880 d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 880 DHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3344455544444444444
No 285
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=86.82 E-value=29 Score=32.98 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=140.9
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHh-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLE-SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK 187 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 187 (416)
+-.+.-|+.+|.++....+ .|..+- +.-.-..++.+++... .+.++|.+.+-++..++.+..- .
T Consensus 163 ~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~v-------------g~~qlQY~SL~~iw~lTf~~~~-a 227 (432)
T COG5231 163 FLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYV-------------GVKQLQYNSLIIIWILTFSKEC-A 227 (432)
T ss_pred HHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhh-------------hhhhhHHHHHHHHHHHhcCHHH-H
Confidence 3455667788888777644 554443 3334455777777653 1468999999999989887653 3
Q ss_pred hhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhccc--CchhhHhhhhhHHHHHHHHhccC--CChHHHHH----
Q 014913 188 SLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVA--EPMQLISLRQELFVEVIQVLHDH--ISQQASKS---- 258 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~---- 258 (416)
+.|.... +.+..|+.+.+.. ...+..-++.++.+++... ..-...... |-+.+-|++|..+ .+.+.+..
T Consensus 228 qdi~K~~-dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~erkysDEel~~di~~i 305 (432)
T COG5231 228 QDIDKMD-DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLERKYSDEELVIDIERI 305 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4444333 4677778877764 4556677888899988632 121222222 4456667766543 12222211
Q ss_pred -----------HHH--HHHH-----hCCCC---------cchHHHHhh--CcHHHHHHHhhcccchhh-hHHHHHHHHHH
Q 014913 259 -----------ALE--VLVN-----ICPWG---------RNRIKGVEA--GAVSILIDLLLDSSLERR-ASEMILTVLDL 308 (416)
Q Consensus 259 -----------A~~--aL~n-----Ls~~~---------~n~~~i~~~--G~v~~Lv~lL~~~~~~~~-~~~~a~~~L~~ 308 (416)
+.. -+.. |+.++ +|...+.+. ..+..|.++|+.. .+. ....|+.=+..
T Consensus 306 ~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n--~~nt~i~vAc~Di~~ 383 (432)
T COG5231 306 RSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN--NPNTWICVACSDIFQ 383 (432)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC--CCCceEeeeHhhHHH
Confidence 110 0111 12211 255666663 4788899999877 343 45556666666
Q ss_pred HcC-ChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 309 LCQ-CAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 309 La~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
+.+ .++++..+.. .|+-..++++|.+.+++++-.|+.++..+-.
T Consensus 384 ~Vr~~PE~~~vl~K-yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 384 LVRASPEINAVLSK-YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHhCchHHHHHHH-hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 665 6888887777 7889999998888888999999999877543
No 286
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.78 E-value=14 Score=40.86 Aligned_cols=144 Identities=15% Similarity=0.070 Sum_probs=108.5
Q ss_pred CccHHHHHHHhc----CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc
Q 014913 196 TFVDSLTQIMQR----GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR 271 (416)
Q Consensus 196 ~~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 271 (416)
...|.+++..++ ++++++..|..+|+.+..-. ..+..+ -+|.|+.++...+++..+-++.-++..|+..-+
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fces--~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFCES--HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHHHH--HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 378888888854 58999999999999987442 223333 579999999843399999999999999987666
Q ss_pred chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHH
Q 014913 272 NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSI 351 (416)
Q Consensus 272 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L 351 (416)
| +++. --+.|...|.+. +..+++.|+.+|..|-..+ .+.. .|-++-+...|...+..++..|-.....|
T Consensus 994 n---lie~-~T~~Ly~rL~D~--~~~vRkta~lvlshLILnd----miKV-KGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 N---LIEP-WTEHLYRRLRDE--SPSVRKTALLVLSHLILND----MIKV-KGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred c---ccch-hhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhh----hhHh-cccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 5 2332 336677888887 8999999999999997765 2333 57788888877777778888888666666
Q ss_pred hcCC
Q 014913 352 SKFS 355 (416)
Q Consensus 352 ~~~~ 355 (416)
+...
T Consensus 1063 s~k~ 1066 (1251)
T KOG0414|consen 1063 SSKG 1066 (1251)
T ss_pred hhcc
Confidence 6654
No 287
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=85.95 E-value=11 Score=32.04 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=80.4
Q ss_pred cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHH
Q 014913 138 AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAV 217 (416)
Q Consensus 138 ~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~ 217 (416)
.++.|.++|+.+. +..++.+++++|+.|-.-+.-..+.+.. ..+.-.. ...+......
T Consensus 11 LL~~L~~iLk~e~--------------s~~iR~E~lr~lGilGALDP~~~k~~~~----~~~~~~~--~~~~~~~~~~-- 68 (160)
T PF11865_consen 11 LLDILLNILKTEQ--------------SQSIRREALRVLGILGALDPYKHKSIQK----SLDSKSS--ENSNDESTDI-- 68 (160)
T ss_pred HHHHHHHHHHhCC--------------CHHHHHHHHHHhhhccccCcHHHhcccc----cCCcccc--ccccccchhh--
Confidence 4677888888773 5889999999999876544444343331 1110000 0111111111
Q ss_pred HHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchh
Q 014913 218 LLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLER 296 (416)
Q Consensus 218 ~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~ 296 (416)
.+....... ......- ..++..|+++|++..-..-...++.|+.++-.... ....+... +||.++..++.. +.
T Consensus 69 -~l~~~~~~~-~~ee~y~-~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~--~~ 142 (160)
T PF11865_consen 69 -SLPMMGISP-SSEEYYP-TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTC--PD 142 (160)
T ss_pred -HHhhccCCC-chHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhC--CH
Confidence 111111100 1111112 25788999999987334455567788777653332 33334433 899999999976 55
Q ss_pred hhHHHHHHHHHHHc
Q 014913 297 RASEMILTVLDLLC 310 (416)
Q Consensus 297 ~~~~~a~~~L~~La 310 (416)
..+|....-|..|.
T Consensus 143 ~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 143 SLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666553
No 288
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=85.63 E-value=17 Score=35.75 Aligned_cols=113 Identities=13% Similarity=0.196 Sum_probs=81.0
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhc-cCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVT-NSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
++..-..|+..+..+..+.|..-..+.++|.++.++..+. .+.. .+.++....-.+|..+|.+....
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~------------~s~e~l~~lP~~l~AicLN~~Gl 189 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL------------PSSEVLTSLPNVLSAICLNNRGL 189 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC------------CcHHHHHHHHHHHhHHhcCHHHH
Confidence 3577788999999999999999999999999999999998 5421 24566666677888999999887
Q ss_pred hhhhccccCCccHHHHHHHhcCCH-------HHHHHHHHHHHHhhcccCchhhHhh
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRGTY-------ESRAYAVLLLKSMLEVAEPMQLISL 235 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~~~-------~~~~~a~~~L~~l~~~~~~~~~~~~ 235 (416)
+.+.. . +.++.+.+++.+.+. +.-...-..+-.|..+...-+..+.
T Consensus 190 ~~~~~--~-~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 190 EKVKS--S-NPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred HHHHh--c-ChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666 5 499999999976432 2222233334445555544444333
No 289
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=0.64 Score=44.41 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=31.8
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~ 42 (416)
...|.+++..|.+||.+.-|..|+...|-.|++.
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk 73 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK 73 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence 3579999999999999999999999999999986
No 290
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=85.36 E-value=37 Score=32.80 Aligned_cols=197 Identities=10% Similarity=0.055 Sum_probs=133.2
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh------hHhhh-hhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ------LISLR-QELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~-~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
+.+..|+..|..-+-+.|..++.+..++.....+.. .+... ...+..|+.--. +++.--.+-..|+....
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDMLRECIK 152 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHHHHHHh
Confidence 488899999999999999999999999986533222 12223 344444444444 44666677888888888
Q ss_pred CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH-cCChhhHHHHHhcC--CchHHHHHHHHhcChhhhHHHH
Q 014913 269 WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLL-CQCAEGRAELLKHG--AGLAIVSKKILRVSQVASERAV 345 (416)
Q Consensus 269 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L-a~~~~~~~~i~~~~--~~v~~Lv~~l~~~~~~~~~~a~ 345 (416)
++.-...+.....+-.+.+.+..+ +-++...|..++..| ..+..--.+..... .-+....++|.+.+=-++.+++
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 888777888888999999999888 889999999999986 45555444444421 1223344434444447899999
Q ss_pred HHHHHHhcCCCChHHHHH-HHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 346 RILLSISKFSATNSVLQE-MLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 346 ~~L~~L~~~~~~~~~~~~-i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
..|..|--...+-.+... +.+..-+..++.+|++. +...+-.|--+.+..-.
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 999998877665444333 33456677777888765 78888888777775544
No 291
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=85.33 E-value=1.2 Score=37.41 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=35.7
Q ss_pred CcccCcCccccCCCceecCCcCc-----ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGIT-----YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght-----~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+..|-||.+--. +...||..+ .=+.|+++|+...+...||.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4567999987753 334566432 24689999999877889999998886
No 292
>PRK14707 hypothetical protein; Provisional
Probab=85.28 E-value=92 Score=37.33 Aligned_cols=237 Identities=12% Similarity=0.056 Sum_probs=135.6
Q ss_pred CCCCCCChHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 014913 88 TPKPPINKAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHES 165 (416)
Q Consensus 88 ~~~~~~~~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~ 165 (416)
....+++...|..++..+++ +.....+|+..|.....+.+.. ..-.+.-+|-..++-|+.-. +
T Consensus 197 ~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l-~~~~~~q~va~~lN~lsKwp--------------~ 261 (2710)
T PRK14707 197 RLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL-RNELKPQELGNALNALSKWA--------------D 261 (2710)
T ss_pred hhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH-HHhCChHHHHHHHHHHhcCC--------------C
Confidence 34456778888888888863 4466667778787766655533 44445566888888888762 4
Q ss_pred cchHHHHHHHHH-hcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHH-HHHHHHHHHHhhcccCchhhHhhhhhHHHH
Q 014913 166 SRPVDEALSILC-NLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYES-RAYAVLLLKSMLEVAEPMQLISLRQELFVE 242 (416)
Q Consensus 166 ~~~~~~A~~~L~-~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 242 (416)
......|+.+|. .++ .+....+-+. + ..+...++-|+. .+..+ +..|..+...|..+.+ ....... -.+..
T Consensus 262 ~~~C~~a~~~lA~rl~-~~~~l~~al~--~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~-l~~~~~~-~~~~~ 335 (2710)
T PRK14707 262 TPVCAAAASALAERLV-DDPGLRKALD--P-INVTQALNALSKWADLPVCAEAAIALAERLADDPE-LCKALNA-RGLST 335 (2710)
T ss_pred chHHHHHHHHHHHHHh-hhHHHHHhcC--H-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHh-hhhccch-HHHHH
Confidence 567777777776 454 3333444444 3 356666666665 34444 4444444445654432 2223333 33444
Q ss_pred HHHHh-ccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHh-hcccchhhhHHHHHHHHH-HHcCChhhHHHH
Q 014913 243 VIQVL-HDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLL-LDSSLERRASEMILTVLD-LLCQCAEGRAEL 319 (416)
Q Consensus 243 Lv~lL-~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~~~a~~~L~-~La~~~~~~~~i 319 (416)
.+.-| +-+.+..+.++|...-..|+.+++-+..+--.|+ ...+.-| +-+ +......|+..|. .|..+.+-+..+
T Consensus 336 ~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~-a~~lNalsKWp--~~~~c~~aa~~LA~~l~~d~~l~~~~ 412 (2710)
T PRK14707 336 ALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGV-SSVLNALSKWP--DTPVCAAAASALAEHVVDDLELRKGL 412 (2710)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHH-HHHHhhhhcCC--CchHHHHHHHHHHHHhccChhhhhhc
Confidence 44444 4442445555555555568888887777655544 4444444 444 5555666666665 556666666655
Q ss_pred HhcCCchHHHHHHHHhc-ChhhhHHHHHHHHH
Q 014913 320 LKHGAGLAIVSKKILRV-SQVASERAVRILLS 350 (416)
Q Consensus 320 ~~~~~~v~~Lv~~l~~~-~~~~~~~a~~~L~~ 350 (416)
- ..+|.-+++-|.+= ...+-..++..|.-
T Consensus 413 ~--~Q~van~lnalsKWPd~~~C~~aa~~lA~ 442 (2710)
T PRK14707 413 D--PQGVSNALNALAKWPDLPICGQAVSALAG 442 (2710)
T ss_pred c--hhhHHHHHHHhhcCCcchhHHHHHHHHHH
Confidence 3 46677777655542 23444455555544
No 293
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=85.14 E-value=43 Score=37.52 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=66.2
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhc----ccCchhhHhhhhhHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLE----VAEPMQLISLRQELF 240 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~i 240 (416)
..+.+..|+..|..++..-+. ...+. ..+|-+|.++..+..++|..|..+|..+.. .......+..+ =.+
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d-e~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-Ylf 509 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD-EVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLF 509 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch-HHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhh
Confidence 356788999999999875432 12333 499999999999999999999999888652 22344555555 578
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhC
Q 014913 241 VEVIQVLHDHISQQASKSALEVLVNIC 267 (416)
Q Consensus 241 ~~Lv~lL~~~~~~~~~~~A~~aL~nLs 267 (416)
|.|-+++.+....-++-.=+..|..|+
T Consensus 510 P~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 510 PHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred hhhHhhhccCccceehhhHHhhHHHHH
Confidence 888888877323444444444444443
No 294
>PHA03096 p28-like protein; Provisional
Probab=84.98 E-value=0.56 Score=43.92 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=29.3
Q ss_pred ccCcCccccCCCc------e-ec-CCcCcccHHHHHHHHHcCC-CCCCCCCC
Q 014913 10 FLCPISLAIMKDP------V-TV-PTGITYDRESIEKWLFAGK-NNTCPMTK 52 (416)
Q Consensus 10 ~~Cpic~~~~~~P------v-~l-~cght~c~~ci~~~~~~~~-~~~CP~~~ 52 (416)
-.|.||++.-.+- . ++ .|.|.||..||..|..+.. ..+||.|+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 3689998654431 1 33 7999999999999987531 34555554
No 295
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=84.91 E-value=0.48 Score=32.32 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=23.2
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
+.|.||.|++.|... .+..-+.+.-..+.....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 468999999843322 2333343333333236789999653
No 296
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.73 E-value=31 Score=38.31 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=96.7
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
++|+.|..|.-+|.++.-=+.+.. + --.|.|+.+|+... ++.++.+++.+++.++..-+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fc----e-s~l~llftimeksp--------------~p~IRsN~VvalgDlav~fp-- 993 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFC----E-SHLPLLFTIMEKSP--------------SPRIRSNLVVALGDLAVRFP-- 993 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHH----H-HHHHHHHHHHhcCC--------------Cceeeecchheccchhhhcc--
Confidence 568899999999988764333221 1 23889999998662 68999999999999987654
Q ss_pred hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
.++. + .-+.|-..|+..++.+|..|..+|.+|-.++ ++-+. |-++-+..+|.++ +.+.+.-|-.-...|
T Consensus 994 -nlie--~--~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVK-Gql~eMA~cl~D~-~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 -NLIE--P--WTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVK-GQLSEMALCLEDP-NAEISDLAKSFFKEL 1062 (1251)
T ss_pred -cccc--h--hhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhc-ccHHHHHHHhcCC-cHHHHHHHHHHHHHh
Confidence 3444 3 6678889999999999999999999998653 33343 8999999999988 777776666333334
Q ss_pred C
Q 014913 267 C 267 (416)
Q Consensus 267 s 267 (416)
+
T Consensus 1063 s 1063 (1251)
T KOG0414|consen 1063 S 1063 (1251)
T ss_pred h
Confidence 3
No 297
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=84.30 E-value=1.1 Score=42.26 Aligned_cols=62 Identities=13% Similarity=0.278 Sum_probs=44.6
Q ss_pred CCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 7 PTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
.+-+-||||.+.+.-|+.= .=||.-|..|=.+. ...||.|+.++. . ..+..+.+.++..+..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~-----~~~CP~Cr~~~g-~---~R~~amEkV~e~~~vp 108 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV-----SNKCPTCRLPIG-N---IRCRAMEKVAEAVLVP 108 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhhh-----cccCCccccccc-c---HHHHHHHHHHHhceec
Confidence 4557899999999999533 45899999995431 567999998886 2 2556666666665443
No 298
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=84.20 E-value=1.1 Score=28.97 Aligned_cols=40 Identities=15% Similarity=0.365 Sum_probs=22.9
Q ss_pred CcCccccCCCceecC---CcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 12 CPISLAIMKDPVTVP---TGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 12 Cpic~~~~~~Pv~l~---cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
|.+|.++...=+.=+ |+-.+=..|+..||+......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 667888777766543 8877778899999986434579987
No 299
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=84.05 E-value=0.67 Score=42.90 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=33.1
Q ss_pred cccCcCccccCCC----ceecCCcCcccHHHHHHHHHcCCCCCCCCCCc
Q 014913 9 FFLCPISLAIMKD----PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQ 53 (416)
Q Consensus 9 ~~~Cpic~~~~~~----Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~ 53 (416)
++-||+|.+.+.+ |..++|||+.=..|++.+..+ ..+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--CCCCCcccc
Confidence 4569999977654 667899998766777776554 499999976
No 300
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.40 E-value=68 Score=34.26 Aligned_cols=259 Identities=15% Similarity=0.214 Sum_probs=124.7
Q ss_pred HHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 98 ITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 98 i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
+.+++..... ...+..+|..++..+..... +.+.. ++..|--+|++. .+.+|-.|.++
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~p--avs~Lq~flssp---------------~~~lRfaAvRt 305 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELAP--AVSVLQLFLSSP---------------KVALRFAAVRT 305 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcch--HHHHHHHHhcCc---------------HHHHHHHHHHH
Confidence 3344444433 45777888888877766443 22222 677777777776 36778888888
Q ss_pred HHhcCCChh--------hhhhhhccccCCcc--HHHHHHHhcCCHHHHHHHHHHHHHhhcc-cCchhhHhhh--------
Q 014913 176 LCNLKISEL--------GLKSLVMGRNGTFV--DSLTQIMQRGTYESRAYAVLLLKSMLEV-AEPMQLISLR-------- 236 (416)
Q Consensus 176 L~~l~~~~~--------~~~~~i~~~~G~~i--~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~-------- 236 (416)
|-.+|.-.. +...+|.+.. ..| ..+..+|+.|+.........-+.++..+ .++.+.+.++
T Consensus 306 LnkvAm~~P~~v~~cN~elE~lItd~N-rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~ 384 (865)
T KOG1078|consen 306 LNKVAMKHPQAVTVCNLDLESLITDSN-RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK 384 (865)
T ss_pred HHHHHHhCCccccccchhHHhhhcccc-cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh
Confidence 887775322 1233443322 133 3456777777766655555555544322 1222222111
Q ss_pred -----hhHHHHHHHHhccCCChHHHHHHHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc
Q 014913 237 -----QELFVEVIQVLHDHISQQASKSALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 237 -----~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La 310 (416)
.+.+..|..+|++....+-+++...+|..+.. .++.|.. ++..|...+.+. +...-+..+|+.|-
T Consensus 385 fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc----e~~~i~~rILhlLG 455 (865)
T KOG1078|consen 385 FPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC----EFTQIAVRILHLLG 455 (865)
T ss_pred ccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc----cchHHHHHHHHHHh
Confidence 12223333333321123333333333333222 2222211 222233333222 22333334444332
Q ss_pred CC-hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHH
Q 014913 311 QC-AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKA 389 (416)
Q Consensus 311 ~~-~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A 389 (416)
.. +. .... ..-+....+.+.-.+..++-.|+.+|..+...+.. .+ ..+.-.|.+.+.. .+++.|++|
T Consensus 456 ~EgP~---a~~P-skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--l~-----~sI~vllkRc~~D-~DdevRdrA 523 (865)
T KOG1078|consen 456 KEGPK---APNP-SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--LL-----PSILVLLKRCLND-SDDEVRDRA 523 (865)
T ss_pred ccCCC---CCCc-chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--cc-----ccHHHHHHHHhcC-chHHHHHHH
Confidence 21 00 0000 11122222222223456777888888888854432 12 2344455556654 489999999
Q ss_pred HHHHHHHHH
Q 014913 390 REVLKLHAR 398 (416)
Q Consensus 390 ~~ll~~l~~ 398 (416)
...|+.+..
T Consensus 524 tf~l~~l~~ 532 (865)
T KOG1078|consen 524 TFYLKNLEE 532 (865)
T ss_pred HHHHHHhhh
Confidence 999999884
No 301
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.20 E-value=0.65 Score=45.88 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred CCCCCcccCcCc-cccCCCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 4 IDVPTFFLCPIS-LAIMKDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 4 ~~~~~~~~Cpic-~~~~~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
...++.+.|++| .+.|.+-+.+ .|..+||..||.+.+.+++...|+.|+.. ...+.++..++..+......
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~~---~~~~~~p~~~r~~~n~~~a~ 287 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNVL---ADDLLPPKTLRDTINRILAS 287 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhccc---ccccCCchhhHHHHHHHHhh
Confidence 346889999999 8999999987 68999999999998776534455555432 34666777776666665554
No 302
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=83.18 E-value=1.8 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=21.7
Q ss_pred ccCcCccccC-----CCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIM-----KDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~-----~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|.||++-. -+|.+. .|+.-.||.|.+--.+++ +..||.|+..+.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg-~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG-NQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS--SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC-cccccccCCCcc
Confidence 4799998533 345554 789999999988777765 899999997775
No 303
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=83.01 E-value=0.44 Score=31.07 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=22.8
Q ss_pred CCceecCC-cCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 20 KDPVTVPT-GITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 20 ~~Pv~l~c-ght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+--.+.| .|..|..|+...+.. ...||+|+++++
T Consensus 11 ~~k~Li~C~dHYLCl~CLt~ml~~--s~~C~iC~~~LP 46 (50)
T PF03854_consen 11 ANKGLIKCSDHYLCLNCLTLMLSR--SDRCPICGKPLP 46 (50)
T ss_dssp --SSEEE-SS-EEEHHHHHHT-SS--SSEETTTTEE--
T ss_pred cCCCeeeecchhHHHHHHHHHhcc--ccCCCcccCcCc
Confidence 34444555 599999999998875 578999999886
No 304
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.37 E-value=68 Score=35.13 Aligned_cols=164 Identities=16% Similarity=0.075 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC---hhhhhhh
Q 014913 113 IKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS---ELGLKSL 189 (416)
Q Consensus 113 ~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~---~~~~~~~ 189 (416)
.+|...|..+++.. .|+.+ .|.++-++.+|.+..... .+..++...+.|+.+++.++.- ++-.+..
T Consensus 390 ~Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~-------~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~ 458 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEAS-------PPNKNPRQKDGALRMVGSLASILLKKSPYKSQ 458 (1010)
T ss_pred HHHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccC-------CCccChhhhhhHHHHHHHHHHHHccCCchHHH
Confidence 45566666666542 12222 277888899998542100 0112567788888888888721 1111222
Q ss_pred hccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC
Q 014913 190 VMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPW 269 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 269 (416)
+. . -.+..+.-.++++..-.|.+|||+++.++..+=....+.. .++......|.++.+..++-.|+-||..+-.+
T Consensus 459 mE--~-flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 459 ME--Y-FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISN 533 (1010)
T ss_pred HH--H-HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence 22 1 1444555566777778999999999999944222222222 46777778887444789999999999998655
Q ss_pred Cc-chHHHHhh--CcHHHHHHHhhcc
Q 014913 270 GR-NRIKGVEA--GAVSILIDLLLDS 292 (416)
Q Consensus 270 ~~-n~~~i~~~--G~v~~Lv~lL~~~ 292 (416)
.+ +...+..+ +.+..|+.+.+..
T Consensus 534 ~~~~~e~~~~hvp~~mq~lL~L~ne~ 559 (1010)
T KOG1991|consen 534 QEQADEKVSAHVPPIMQELLKLSNEV 559 (1010)
T ss_pred chhhhhhHhhhhhHHHHHHHHHHHhc
Confidence 54 44444332 3444455555443
No 305
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=82.20 E-value=0.11 Score=37.20 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=23.4
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+..||.|+..| ...-|+.+|..|-..+.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~---~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK---EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE---EEE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee---cccCCCcccHHH
Confidence 46899998753 334489999999765433 457999999886
No 306
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.41 E-value=81 Score=33.79 Aligned_cols=208 Identities=19% Similarity=0.164 Sum_probs=132.9
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH-HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHH
Q 014913 140 EFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL-SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVL 218 (416)
Q Consensus 140 ~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~ 218 (416)
.-|..+|.+.. ...+..|. ++|..++.+.+ + . ..++.+|+...+.+.+++.-.--
T Consensus 38 ~dL~~lLdSnk---------------d~~KleAmKRIia~iA~G~d-----v---S-~~Fp~VVKNVaskn~EVKkLVyv 93 (968)
T KOG1060|consen 38 DDLKQLLDSNK---------------DSLKLEAMKRIIALIAKGKD-----V---S-LLFPAVVKNVASKNIEVKKLVYV 93 (968)
T ss_pred HHHHHHHhccc---------------cHHHHHHHHHHHHHHhcCCc-----H---H-HHHHHHHHHhhccCHHHHHHHHH
Confidence 34888888873 23444455 57777777665 2 2 38889999999999999998777
Q ss_pred HHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhh
Q 014913 219 LLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRA 298 (416)
Q Consensus 219 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 298 (416)
.|...+....+-... -|..+=+-|+++ ++..|..|+++|..+ |..++.-=++-++-+...+. .+.+
T Consensus 94 YLlrYAEeqpdLALL-----SIntfQk~L~Dp-N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~--s~yV 159 (968)
T KOG1060|consen 94 YLLRYAEEQPDLALL-----SINTFQKALKDP-NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDP--SPYV 159 (968)
T ss_pred HHHHHhhcCCCceee-----eHHHHHhhhcCC-cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCC--cHHH
Confidence 777776554433322 256677778888 889888888877653 44443221222233333444 7889
Q ss_pred HHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHH-hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHH
Q 014913 299 SEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKIL-RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLV 376 (416)
Q Consensus 299 ~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~l 376 (416)
+..|+-++--|=. .++.+.++.+ +++.|+ ..++.+.-.|+.+.-.+|-+. .+.+ ++-..+|..+
T Consensus 160 Rk~AA~AIpKLYsLd~e~k~qL~e-------~I~~LLaD~splVvgsAv~AF~evCPer-----ldLI--HknyrklC~l 225 (968)
T KOG1060|consen 160 RKTAAHAIPKLYSLDPEQKDQLEE-------VIKKLLADRSPLVVGSAVMAFEEVCPER-----LDLI--HKNYRKLCRL 225 (968)
T ss_pred HHHHHHhhHHHhcCChhhHHHHHH-------HHHHHhcCCCCcchhHHHHHHHHhchhH-----HHHh--hHHHHHHHhh
Confidence 9999999988854 5666665554 333344 346678888888888887542 3333 3457788888
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 377 LQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 377 l~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
|- +-++..|-..-.+|-.-.||+
T Consensus 226 l~-dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 226 LP-DVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred cc-chhhhhHHHHHHHHHHHHHhc
Confidence 73 346667766655554445554
No 307
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.13 E-value=1.6 Score=31.16 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=28.1
Q ss_pred ecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhH
Q 014913 24 TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTL 67 (416)
Q Consensus 24 ~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l 67 (416)
+-.=-+|||..|-+..+ +..||.|+-.+. ..-..|...+
T Consensus 24 ICtfEcTFCadCae~~l----~g~CPnCGGelv-~RP~RPaa~L 62 (84)
T COG3813 24 ICTFECTFCADCAENRL----HGLCPNCGGELV-ARPIRPAAKL 62 (84)
T ss_pred EEEEeeehhHhHHHHhh----cCcCCCCCchhh-cCcCChHHHH
Confidence 33446899999998876 458999998887 5555554333
No 308
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.47 E-value=57 Score=31.41 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=109.8
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCC-Chhhh-hhhhccccCCccHHHHHHHhcC----C---
Q 014913 139 VEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKI-SELGL-KSLVMGRNGTFVDSLTQIMQRG----T--- 209 (416)
Q Consensus 139 i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~-~~~~~-~~~i~~~~G~~i~~Lv~lL~~~----~--- 209 (416)
++.|.+.|++. ...+...+++.|..+.. +.... +++..... =..+.+..++... .
T Consensus 58 ~k~lyr~L~~~---------------~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd-~~~~~l~kll~~~~~~~~~~~ 121 (330)
T PF11707_consen 58 LKLLYRSLSSS---------------KPSLTNPALRLLTAIVSFDGGALAREVLRSFD-FSLKSLPKLLTPRKKEKEKDS 121 (330)
T ss_pred HHHHHHHhCcC---------------cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchhhHHHHhccccccccccc
Confidence 77788888877 36677789999998887 44233 34444322 1455666666421 1
Q ss_pred ------HHHHHHHHHHHHHhhcccC--chhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHH-hCCCCc----chHHH
Q 014913 210 ------YESRAYAVLLLKSMLEVAE--PMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVN-ICPWGR----NRIKG 276 (416)
Q Consensus 210 ------~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~----n~~~i 276 (416)
..+|.+....+..+....+ -+..+....+.+..+.+-|..+ +.++....+.+|+. +-.+.. .|..+
T Consensus 122 ~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~ 200 (330)
T PF11707_consen 122 ESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKL 200 (330)
T ss_pred cccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhh
Confidence 1778888877777665433 4455666667889999999988 89999999999995 443332 55667
Q ss_pred HhhCcHHHHHHHhhcccchh----hhHHHHHHHHHHHcCChh
Q 014913 277 VEAGAVSILIDLLLDSSLER----RASEMILTVLDLLCQCAE 314 (416)
Q Consensus 277 ~~~G~v~~Lv~lL~~~~~~~----~~~~~a~~~L~~La~~~~ 314 (416)
....++..|+.+-... ++ .+.+.+-..|..+|.++.
T Consensus 201 fn~~~L~~l~~Ly~~~--~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 201 FNEWTLSQLASLYSRD--GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cCHHHHHHHHHHhccc--CCcccchHHHHHHHHHHHHhcCCC
Confidence 7778899999977666 55 778888888888887653
No 309
>PHA02862 5L protein; Provisional
Probab=80.38 E-value=1.6 Score=35.84 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=33.4
Q ss_pred cCcCccccCCCceecCCcCc-----ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPVTVPTGIT-----YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght-----~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|=||.+--.+. .-||..+ .=+.|+++|+...++..||.|+.++.
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 588888875555 3465432 33689999998766889999998875
No 310
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.11 E-value=5.8 Score=41.37 Aligned_cols=114 Identities=16% Similarity=0.100 Sum_probs=76.3
Q ss_pred CcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChH
Q 014913 280 GAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNS 359 (416)
Q Consensus 280 G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~ 359 (416)
|.+..|++-..+. +..++-..+.+|..|..+...+..-+- .+....+...+...-+.++..|+.+|..+=....+++
T Consensus 85 ~~f~hlLRg~Esk--dk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee 161 (892)
T KOG2025|consen 85 GTFYHLLRGTESK--DKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE 161 (892)
T ss_pred HHHHHHHhcccCc--chhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence 4555555555555 778899999999999874433333333 2445555555665567889999999988876655533
Q ss_pred HHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCC
Q 014913 360 VLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPCV 406 (416)
Q Consensus 360 ~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~ 406 (416)
.-++-.+..+++.++++++|+.|...+ .-.++--|||
T Consensus 162 -------~~v~n~l~~liqnDpS~EVRRaaLsnI---~vdnsTlp~I 198 (892)
T KOG2025|consen 162 -------CPVVNLLKDLIQNDPSDEVRRAALSNI---SVDNSTLPCI 198 (892)
T ss_pred -------ccHHHHHHHHHhcCCcHHHHHHHHHhh---ccCcccchhH
Confidence 356778889999999999998765433 3333334665
No 311
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.65 E-value=48 Score=30.12 Aligned_cols=135 Identities=20% Similarity=0.209 Sum_probs=82.8
Q ss_pred HHHHHHHh--cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 99 TKLLNEAA--KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 99 ~~lv~~l~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
+.++..+. .++..+...+..|..++.++..+... ++..|+.+...+ ....+.-+.+.+
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~---------------~~~~~~~~~rLl 62 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQG---------------SLELRYVALRLL 62 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCC---------------chhHHHHHHHHH
Confidence 34455454 46788899999999999876112222 234444444444 234444566777
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHH--Hh--------cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQI--MQ--------RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQV 246 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~l--L~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 246 (416)
..+...++..-. .++.++.. ++ ....+.....+..+..++....+ .-...++.|..+
T Consensus 63 ~~lw~~~~r~f~--------~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~ 129 (234)
T PF12530_consen 63 TLLWKANDRHFP--------FLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGC 129 (234)
T ss_pred HHHHHhCchHHH--------HHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHH
Confidence 777654442211 44444443 11 12345555567788888876554 112578889999
Q ss_pred h-ccCCChHHHHHHHHHHHHhC
Q 014913 247 L-HDHISQQASKSALEVLVNIC 267 (416)
Q Consensus 247 L-~~~~~~~~~~~A~~aL~nLs 267 (416)
| ++. +...+..++.+|..||
T Consensus 130 L~~~~-~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 130 LNQSC-DEVAQALALEALAPLC 150 (234)
T ss_pred Hhccc-cHHHHHHHHHHHHHHH
Confidence 9 676 7888999999999999
No 312
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=79.39 E-value=11 Score=31.47 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=58.9
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc-hhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP-MQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
.++..|.+.|.++++.++..|..+|..+..+... -...+.+.+.+..|+++++...+..+++.++..|.+-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3788888999999999999999999999877543 233344568999999999865478999999999988764
No 313
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=79.12 E-value=34 Score=37.15 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=110.9
Q ss_pred chHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHH
Q 014913 167 RPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ-RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQ 245 (416)
Q Consensus 167 ~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 245 (416)
.-+.+|+..+.....+.. +....... +-+-.++.... ..|..+...|+..|..++..-.....-.. .+..|.|..
T Consensus 268 K~R~Eale~l~~~l~e~~--~~~~~~~~-~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~lld 343 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAK--KEIVKGYT-GLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSLLD 343 (815)
T ss_pred HHHHHHHHHHHHHHhccc--cccccCcc-hHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchHHH
Confidence 345556665554443221 12222112 13333333333 34777888899999888854332222222 267899999
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh---HHHHHhc
Q 014913 246 VLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG---RAELLKH 322 (416)
Q Consensus 246 lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~---~~~i~~~ 322 (416)
-+.+. ...++..+..++-..+... .-...++.++..+... ++.++..+...|......... ....+
T Consensus 344 ~lkek-k~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~-- 412 (815)
T KOG1820|consen 344 RLKEK-KSELRDALLKALDAILNST------PLSKMSEAILEALKGK--NPQIKGECLLLLDRKLRKLGPKTVEKETV-- 412 (815)
T ss_pred Hhhhc-cHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhhcCCcCcchhhH--
Confidence 99887 7788877777776655411 1123457777888888 899999988888877664332 11122
Q ss_pred CCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHh
Q 014913 323 GAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQ 378 (416)
Q Consensus 323 ~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~ 378 (416)
.+.++.++.+....+..++..|..++..+-...+ .+++..++.-+.
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G----------e~~~~k~L~~~~ 458 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG----------EEVFKKLLKDLD 458 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHhhc
Confidence 2456677765555566788888888777665444 345555555553
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.58 E-value=1.2 Score=46.97 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=34.3
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
-.|..|.-.+.-|++- .|||.|=+.|++ .+ ...||.|.-.+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~-~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DK-EDKCPKCLPEL 882 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cC-cccCCccchhh
Confidence 4899999999999975 999999999987 22 67899996533
No 315
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=78.25 E-value=14 Score=30.75 Aligned_cols=83 Identities=11% Similarity=0.145 Sum_probs=63.1
Q ss_pred CchHHHHHHHHh-cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHH-HHHHHhcC--CcHHHHHHHHHHHHHHHHh
Q 014913 324 AGLAIVSKKILR-VSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAK-LCLVLQVD--NSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 324 ~~v~~Lv~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~-L~~ll~~~--~~~~~k~~A~~ll~~l~~~ 399 (416)
.++..|-+.|.. .++.++..|+.+|-.+..+.+. .+..++.+...+.- |+.++... ....+|++...++...+..
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~-~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH-RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 345556666653 3567888899999998888874 68888998899987 99998643 2458899999999988887
Q ss_pred ccCCCCCC
Q 014913 400 WKNSPCVP 407 (416)
Q Consensus 400 ~~~~~~~~ 407 (416)
..+.|..+
T Consensus 117 f~~~~~l~ 124 (141)
T cd03565 117 FRGSPDLT 124 (141)
T ss_pred hCCCccch
Confidence 77777644
No 316
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.13 E-value=14 Score=39.90 Aligned_cols=144 Identities=16% Similarity=0.189 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCc-HHHHHHHHHHHHHHhcChhhhhHHhh--cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 98 ITKLLNEAAKSP-QMQIKCLKKLRSIAAENETNKRCLES--AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 98 i~~lv~~l~~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+|.+++.++..+ .++..=+.+|..+..+-|. +.+.. .-..|.|++.|+-. |..++..++.
T Consensus 869 vP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~---------------D~~v~vstl~ 931 (1030)
T KOG1967|consen 869 VPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMP---------------DVIVRVSTLR 931 (1030)
T ss_pred HHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCC---------------ccchhhhHhh
Confidence 455666665333 5555566667676665442 33222 36788888888877 5888888888
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCC---HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGT---YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
++.-+.... ..++.++.+..+|.++.+=++.+ ..+|+.|...|..|...-..+...-....+|..|++.|.+.
T Consensus 932 ~i~~~l~~~---~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk- 1007 (1030)
T KOG1967|consen 932 TIPMLLTES---ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK- 1007 (1030)
T ss_pred hhhHHHHhc---cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-
Confidence 887554322 22332222135666666544443 77999999999999974333333334457999999999988
Q ss_pred ChHHHHHHHHH
Q 014913 252 SQQASKSALEV 262 (416)
Q Consensus 252 ~~~~~~~A~~a 262 (416)
..-+|+.|..+
T Consensus 1008 KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 1008 KRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHH
Confidence 77888888765
No 317
>PF14353 CpXC: CpXC protein
Probab=78.02 E-value=1.4 Score=36.08 Aligned_cols=48 Identities=23% Similarity=0.157 Sum_probs=34.2
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcC-CCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG-KNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~ 56 (416)
+.+||-|+..|.-.+-..-.-.....-.++-++.. ...+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 35899999999998876666556655556655321 1578999998875
No 318
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=77.85 E-value=0.85 Score=38.19 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=17.4
Q ss_pred CcccCcCccccCCCceecCC
Q 014913 8 TFFLCPISLAIMKDPVTVPT 27 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~c 27 (416)
++.+||||++...+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46799999999999998854
No 319
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=1.9 Score=42.43 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=29.8
Q ss_pred cccCcCcc-ccCCCce---ecCCcCcccHHHHHHHHHc----CCCCCCCC
Q 014913 9 FFLCPISL-AIMKDPV---TVPTGITYDRESIEKWLFA----GKNNTCPM 50 (416)
Q Consensus 9 ~~~Cpic~-~~~~~Pv---~l~cght~c~~ci~~~~~~----~~~~~CP~ 50 (416)
...|.||. +.+...- +..|+|.||..|+.+++.. +....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 35899999 4444323 4579999999999999873 22456765
No 320
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=77.67 E-value=16 Score=30.03 Aligned_cols=75 Identities=13% Similarity=0.230 Sum_probs=58.0
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch-hhHhhhhhHHHHHHHHhcc--CCChHHHHHHHHHHHHhCCCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM-QLISLRQELFVEVIQVLHD--HISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~--~~~~~~~~~A~~aL~nLs~~~ 270 (416)
.++..|-+.|+++++.++..|..+|-.+..+.... ...+.....+..|++++.. ..+..+++.++..|.+.+..-
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 37788888999999999999999999998776542 2333333677789999975 347799999999998876533
No 321
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.17 E-value=34 Score=36.22 Aligned_cols=106 Identities=16% Similarity=0.034 Sum_probs=64.0
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
-++++.|+.+|.-.+..+ + ...+..|++|.. .|+-+|--++.+|+-.|.....+..+ ..+.+|+
T Consensus 569 DDVrRaAVialGFVl~~d----------p-~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi----~lLepl~ 633 (929)
T KOG2062|consen 569 DDVRRAAVIALGFVLFRD----------P-EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI----NLLEPLT 633 (929)
T ss_pred hHHHHHHHHHheeeEecC----------h-hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH----HHHhhhh
Confidence 457777777777555433 3 356677788865 48999999999999888775555443 2344443
Q ss_pred HHhccCCChHHHHHHHHHHHHh-CCCCc-chHHHHhhCcHHHHHHHhhcc
Q 014913 245 QVLHDHISQQASKSALEVLVNI-CPWGR-NRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nL-s~~~~-n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
++. ..-+|+.|+-++.-+ ....+ ....+ .|....+.+++.+.
T Consensus 634 ---~D~-~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 634 ---SDP-VDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDK 677 (929)
T ss_pred ---cCh-HHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhh
Confidence 444 556777777666643 33322 11111 23445566666554
No 322
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.11 E-value=28 Score=32.90 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHH
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKG 276 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 276 (416)
++...+..|.+.+.+....+...|..|+.++.....-.. ...|..+++-+++. ...+.+.|+.++..+...-.+...-
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777777777777777766442222222 25788888888888 7788888998888886644433222
Q ss_pred HhhCcHHHHHHHh-hccc-chhhhHHHHHHHHHHHcCCh
Q 014913 277 VEAGAVSILIDLL-LDSS-LERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 277 ~~~G~v~~Lv~lL-~~~~-~~~~~~~~a~~~L~~La~~~ 313 (416)
....++..| .... +..-+++.|-.+|..+..+.
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 233333333 3221 13456788888888887653
No 323
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=77.08 E-value=50 Score=34.81 Aligned_cols=131 Identities=18% Similarity=0.136 Sum_probs=90.4
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~ 317 (416)
.++|.|..-+++. +...++.++..+-.++..-+ ...++.-++|.|-.+-...+ ...++.+++.++..+.. .-.+.
T Consensus 389 ~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q-~lD~~ 463 (700)
T KOG2137|consen 389 KILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQ-RLDKA 463 (700)
T ss_pred HHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHH-HHHHH
Confidence 5888888888888 89999999999998887666 45666668888888754432 67888899999998882 22344
Q ss_pred HHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc
Q 014913 318 ELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV 379 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~ 379 (416)
.+++ -+.++.+.+....+......+.+..++.-...+ .+++....++|.++-+.-.
T Consensus 464 ~v~d---~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~---g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 464 AVLD---ELLPILKCIKTRDPAIVMGFLRIYEALALIIYS---GVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred HhHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc---ceeeehhhhhhhhhhhhhc
Confidence 4444 255565556555666766666666666655443 2445556778888777644
No 324
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.99 E-value=63 Score=30.00 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=126.2
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
.++..|.+|+..|..+...-+... ....-|..|+.++.+.- .|......++..|..|.....-.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl-------------~D~~~~~~~l~gl~~L~~~~~~~ 74 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRL-------------DDHACVQPALKGLLALVKMKNFS 74 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHh-------------ccHhhHHHHHHHHHHHHhCcCCC
Confidence 356899999999999887655322 22333677887776542 13445555566665554222111
Q ss_pred hhhhccccCCccHHHHHHHh--cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHH
Q 014913 187 KSLVMGRNGTFVDSLTQIMQ--RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLV 264 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 264 (416)
..... ..+..+.+..+ +-....|...-.+|..+.......-.- ...+.+..++++.....|++....+-..+.
T Consensus 75 ~~~~~----~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~ 149 (262)
T PF14500_consen 75 PESAV----KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLK 149 (262)
T ss_pred hhhHH----HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 11111 12233332221 234567888888888887553222211 223688889999987668998888888888
Q ss_pred HhCCCCcchHHHHhhCcHHHHHHHhhc-------c-cchh--hhHHHHHHHHH-HHcCChhhHHHHHhcCCchHHHHHHH
Q 014913 265 NICPWGRNRIKGVEAGAVSILIDLLLD-------S-SLER--RASEMILTVLD-LLCQCAEGRAELLKHGAGLAIVSKKI 333 (416)
Q Consensus 265 nLs~~~~n~~~i~~~G~v~~Lv~lL~~-------~-~~~~--~~~~~a~~~L~-~La~~~~~~~~i~~~~~~v~~Lv~~l 333 (416)
.+...-+. ...++-|-+.+.. + +.++ -.++.-...|. .|+.++ .+ . ..++|.|++.|
T Consensus 150 ~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~f-a-~~~~p~LleKL 217 (262)
T PF14500_consen 150 VILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LF-A-PFAFPLLLEKL 217 (262)
T ss_pred HHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hh-H-HHHHHHHHHHH
Confidence 77654442 2233444444431 1 1121 23344444444 444444 23 3 36789999999
Q ss_pred HhcChhhhHHHHHHHHHHhcCCC
Q 014913 334 LRVSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 334 ~~~~~~~~~~a~~~L~~L~~~~~ 356 (416)
.+.+..++.-+..+|...+..-+
T Consensus 218 ~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 218 DSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred cCCCcHHHHHHHHHHHHHHHHCC
Confidence 98888899999998888665544
No 325
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=76.80 E-value=27 Score=37.36 Aligned_cols=176 Identities=16% Similarity=0.169 Sum_probs=107.5
Q ss_pred HHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCc
Q 014913 118 KLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTF 197 (416)
Q Consensus 118 ~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~ 197 (416)
.|++...+++.+.+.+.+.|++..+...++.-. ..+++..++..|.+++...+....... . ..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~--------------~~~~~~~il~~l~n~~~~~~~~~~~~~-~--~~ 556 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD--------------NEELHRKILGLLGNLAEVLELRELLMI-F--EF 556 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc--------------chhHHHHHHHHHHHHHHHhhhhhhhhH-H--HH
Confidence 788899999999999999999999999998762 478899999999999976543322221 1 12
Q ss_pred cH--HHHHHHhcCCH-HHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh-CCCCcch
Q 014913 198 VD--SLTQIMQRGTY-ESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI-CPWGRNR 273 (416)
Q Consensus 198 i~--~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL-s~~~~n~ 273 (416)
+. .+-.++..-+. +.--.|+.+|..+..+.+... ....+..+-..+... .......
T Consensus 557 ~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~~~--------------------~~~~r~~~~~~l~e~i~~~~~~~ 616 (699)
T KOG3665|consen 557 IDFSVFKVLLNKWDSIERSYNAASILALLLSDSEKTT--------------------ECVFRNSVNELLVEAISRWLTSE 616 (699)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCcCc--------------------cccchHHHHHHHHHHhhccCccc
Confidence 22 22223433333 666667777777665543311 111222222222221 2223333
Q ss_pred HHHHhhCcHHH-HHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHHH
Q 014913 274 IKGVEAGAVSI-LIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 274 ~~i~~~G~v~~-Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~~ 332 (416)
..+.-...+.+ +..++.... .+..+-.|++++.++... +++...+.. .++++.+.+.
T Consensus 617 ~~~~~~~~f~~~~~~il~~s~-~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~~ 675 (699)
T KOG3665|consen 617 IRVINDRSFFPRILRILRLSK-SDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIENI 675 (699)
T ss_pred eeehhhhhcchhHHHHhcccC-CCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhhc
Confidence 33333344444 555665443 567889999999999874 555555555 7888777763
No 326
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=76.67 E-value=1.9 Score=45.03 Aligned_cols=48 Identities=8% Similarity=-0.043 Sum_probs=36.2
Q ss_pred CCCcccCcCccccCCCce----ecC---CcCcccHHHHHHHHHc----CCCCCCCCCCc
Q 014913 6 VPTFFLCPISLAIMKDPV----TVP---TGITYDRESIEKWLFA----GKNNTCPMTKQ 53 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv----~l~---cght~c~~ci~~~~~~----~~~~~CP~~~~ 53 (416)
.++.-.|++|..-+.+|+ +.+ |+|.||..||..|... ..+..|+.|..
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 456679999999999966 334 9999999999999764 12455666643
No 327
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=76.37 E-value=34 Score=26.55 Aligned_cols=72 Identities=17% Similarity=0.143 Sum_probs=54.5
Q ss_pred HhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHH
Q 014913 233 ISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLD 307 (416)
Q Consensus 233 ~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~ 307 (416)
+....+.+..|+.-+... +....+.++..|..|..++.....+.+-|++..|-++=... ++..+...-.++.
T Consensus 25 l~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~--~~~~~~~id~il~ 96 (98)
T PF14726_consen 25 LVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV--EPNLQAEIDEILD 96 (98)
T ss_pred HccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC--CHHHHHHHHHHHh
Confidence 334446777777777776 67789999999999999999999999999999977776554 5555555555543
No 328
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=75.34 E-value=75 Score=34.27 Aligned_cols=187 Identities=14% Similarity=0.163 Sum_probs=120.7
Q ss_pred hHHHHHHHHHHh--cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAA--KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
+..+.+....+- ..+.+|..+..-+.+++.--+ ..+...+.+|.+++++..+ ...+++.|
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~Dd---------------qdsVr~~a 296 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDD---------------QDSVREAA 296 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcc---------------hhhHHHHH
Confidence 455666666665 346888888888888877533 3778889999999998876 35678888
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
...+.++...-+.--.... ...+.+++....++..++...+.....+...-+. ... ...-+++...+++.. .
T Consensus 297 ~~~~~~l~~l~~~~~d~~~----~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~-~~~~~~~~~~l~~~~-~ 368 (759)
T KOG0211|consen 297 VESLVSLLDLLDDDDDVVK----SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SAT-RTQLVPPVSNLLKDE-E 368 (759)
T ss_pred HHHHHHHHHhcCCchhhhh----hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccC-cccchhhHHHHhcch-h
Confidence 7777665532111113333 3788899999999999998888888888754333 111 123567777777766 5
Q ss_pred hHHHHHHHHHHHHhCCCC--cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 253 QQASKSALEVLVNICPWG--RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~--~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
.+.+.+++.-...++... +....+...-++|.+-.++.+. +..++...+.....+
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~--~~~vr~a~a~~~~~~ 425 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN--ALHVRSALASVITGL 425 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc--cchHHHHHhcccccc
Confidence 666666665555555432 3445555555677777777665 555555555555554
No 329
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.23 E-value=1.3e+02 Score=32.68 Aligned_cols=189 Identities=8% Similarity=0.074 Sum_probs=114.7
Q ss_pred CChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 93 INKAQITKLLNEAAKS-PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 93 ~~~~~i~~lv~~l~~~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
.+.+.....+..++++ +.+|..++..|+.+.+.. .-...+...+++......|+.. |+=+.-+
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~Lkde---------------dsyvyLn 787 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDE---------------DSYVYLN 787 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhccc---------------CceeeHH
Confidence 3446677778888543 599999999999999865 3556677789999999999987 4667777
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHH-HHhcC---CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQ-IMQRG---TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~-lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
|+..+..|+.-.+ . ..++.|.+ ..+.. .++.+...-.++.++...-..-.. .-.+-.+......+
T Consensus 788 aI~gv~~Lcevy~---------e-~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~-~y~~~Li~tfl~gv 856 (982)
T KOG4653|consen 788 AIRGVVSLCEVYP---------E-DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF-KYKAVLINTFLSGV 856 (982)
T ss_pred HHHHHHHHHHhcc---------h-hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH-HHHHHHHHHHHHhc
Confidence 8885555552211 1 24555555 23221 133444444566655533111111 11113445555666
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 248 HDHISQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 248 ~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
+++ +...|..++..|.+||.-.. .-..+. .++.-++.+...+. +.-+++.|+-.+..+-.+
T Consensus 857 rep-d~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~-s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 857 REP-DHEFRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDG-SVLVRRAAVHLLAELLNG 919 (982)
T ss_pred CCc-hHHHHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCC-chhhHHHHHHHHHHHHhc
Confidence 666 77888899999999886332 111222 24555666665542 566777777777777654
No 330
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.01 E-value=83 Score=36.28 Aligned_cols=223 Identities=16% Similarity=0.178 Sum_probs=114.5
Q ss_pred CcchHHHHHHHHHh-cCCChhhhhhhhccc-cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHH
Q 014913 165 SSRPVDEALSILCN-LKISELGLKSLVMGR-NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVE 242 (416)
Q Consensus 165 ~~~~~~~A~~~L~~-l~~~~~~~~~~i~~~-~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 242 (416)
+..+|. |..-+.+ |..+. +..+.+. . ..++-|+.-|.+....+|+.+|.||..|-...+.....-.-......
T Consensus 1011 ~~~Vq~-aM~sIW~~Li~D~---k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~ 1085 (1702)
T KOG0915|consen 1011 DKKVQD-AMTSIWNALITDS---KKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEA 1085 (1702)
T ss_pred cHHHHH-HHHHHHHHhccCh---HHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455554 4444444 33332 2333321 2 36777777777888999999999999998775544332111223334
Q ss_pred HHHHhccCCChHHHHHH---HHHHHHhCC---CCcc---hHHHHhhCcHHHHHH--HhhcccchhhhHHHHHHHHHHHcC
Q 014913 243 VIQVLHDHISQQASKSA---LEVLVNICP---WGRN---RIKGVEAGAVSILID--LLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 243 Lv~lL~~~~~~~~~~~A---~~aL~nLs~---~~~n---~~~i~~~G~v~~Lv~--lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
+.+...+= ...+|++| +.+|..|+. +..| -+++. +-++|.|++ ++ +. -++++.-++++|.-|+.
T Consensus 1086 ~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~--v~evr~~si~tl~dl~K 1160 (1702)
T KOG0915|consen 1086 AFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SK--VNEVRRFSIGTLMDLAK 1160 (1702)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cc--hHHHHHHHHHHHHHHHH
Confidence 44444332 44566655 455555542 1111 11222 235555543 22 22 56888999999999998
Q ss_pred ChhhHHHHHhcCCchHHHHHHHHhcCh-----------hhhHHHHHHHH-HHhcCCCChHHHHHHHh-------cChHHH
Q 014913 312 CAEGRAELLKHGAGLAIVSKKILRVSQ-----------VASERAVRILL-SISKFSATNSVLQEMLQ-------IGVVAK 372 (416)
Q Consensus 312 ~~~~~~~i~~~~~~v~~Lv~~l~~~~~-----------~~~~~a~~~L~-~L~~~~~~~~~~~~i~~-------~G~v~~ 372 (416)
+....-.-.. ...||.|++......+ .....|+..+. +.+..++-=+.....++ ...+|.
T Consensus 1161 ssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~ 1239 (1702)
T KOG0915|consen 1161 SSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPR 1239 (1702)
T ss_pred hchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7544322222 3455555553221111 11122222221 12322221001111111 256788
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 373 LCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 373 L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+.+++++.-.-.+|-.++..+-.|..
T Consensus 1240 l~el~R~sVgl~Tkvg~A~fI~~L~~ 1265 (1702)
T KOG0915|consen 1240 LTELVRGSVGLGTKVGCASFISLLVQ 1265 (1702)
T ss_pred HHHHHhccCCCCcchhHHHHHHHHHH
Confidence 88888876556677777776666665
No 331
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.72 E-value=1.4e+02 Score=32.86 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=82.1
Q ss_pred cCCccHHHHHHHh------c--CCHHHHHHHHHHHHHhhcccCchhh--HhhhhhHHHHHHHHhccCCChHHHHHHHHHH
Q 014913 194 NGTFVDSLTQIMQ------R--GTYESRAYAVLLLKSMLEVAEPMQL--ISLRQELFVEVIQVLHDHISQQASKSALEVL 263 (416)
Q Consensus 194 ~G~~i~~Lv~lL~------~--~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 263 (416)
+ +.++.+++.|. . .++..+.-|..++++|++.=..+.. -..+.=.+..+.-.++++ ..-+|..|+|.|
T Consensus 409 ~-k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~-~g~Lrarac~vl 486 (1010)
T KOG1991|consen 409 P-KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP-YGYLRARACWVL 486 (1010)
T ss_pred h-hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc-hhHHHHHHHHHH
Confidence 5 39999999998 2 3566778888888888843221111 111212334444566777 788999999999
Q ss_pred HHhCC-CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHHhcCCchHHHHHHHH
Q 014913 264 VNICP-WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELLKHGAGLAIVSKKIL 334 (416)
Q Consensus 264 ~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~~~~v~~Lv~~l~ 334 (416)
..++. .-.+...+.+ ++......|.++. +-.++-.|+-+|..+-.+.. ..+.+..+ ||.+++.++
T Consensus 487 ~~~~~~df~d~~~l~~--ale~t~~~l~~d~-~lPV~VeAalALq~fI~~~~~~~e~~~~h---vp~~mq~lL 553 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSE--ALELTHNCLLNDN-ELPVRVEAALALQSFISNQEQADEKVSAH---VPPIMQELL 553 (1010)
T ss_pred HHHHhccCCChHHHHH--HHHHHHHHhccCC-cCchhhHHHHHHHHHHhcchhhhhhHhhh---hhHHHHHHH
Confidence 99983 3344333333 4556666666322 66788888899998866543 33444332 555555444
No 332
>PLN02195 cellulose synthase A
Probab=74.52 E-value=2.5 Score=45.81 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=35.0
Q ss_pred cCcCccc-----cCCCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLA-----IMKDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~-----~~~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.||++ ..-+|.+. .||.-.||.|.+- -++.|+..||.|+..++
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhh-hhhcCCccCCccCCccc
Confidence 6999997 44467655 7999999999844 44335899999998886
No 333
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.32 E-value=2.3 Score=33.63 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCCCCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 1 MEEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 1 ~~~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
|...++=....||-|+.-|+| +.. ..-+||.|+..+.
T Consensus 1 MakpelGtKR~Cp~CG~kFYD------------------Lnk-~PivCP~CG~~~~ 37 (108)
T PF09538_consen 1 MAKPELGTKRTCPSCGAKFYD------------------LNK-DPIVCPKCGTEFP 37 (108)
T ss_pred CCccccCCcccCCCCcchhcc------------------CCC-CCccCCCCCCccC
Confidence 555556566777765554443 122 2456777777665
No 334
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=74.26 E-value=3 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=23.8
Q ss_pred ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 22 PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 22 Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..+-+=-.|||..|.+..+ ...||.|+..+.
T Consensus 22 A~ICSfECTFC~~C~e~~l----~~~CPNCgGelv 52 (57)
T PF06906_consen 22 AYICSFECTFCADCAETML----NGVCPNCGGELV 52 (57)
T ss_pred ceEEeEeCcccHHHHHHHh----cCcCcCCCCccc
Confidence 3344556899999999877 358999998875
No 335
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=74.26 E-value=2.3 Score=40.04 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=37.0
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
.++-.|-||-+-..=--.+||||..|..|--+.-.-.....||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3557899999877777788999999999976643222267899997654
No 336
>PLN02189 cellulose synthase
Probab=74.16 E-value=2.7 Score=45.96 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=34.7
Q ss_pred cCcCcccc-----CCCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAI-----MKDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~-----~~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.||++- .-+|.+. .||.-.|+.|.+-=.++ ++..||.|+..+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e-g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE-GTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc-CCccCcccCCchh
Confidence 89999975 3356654 68989999998554444 4899999998886
No 337
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.78 E-value=67 Score=33.64 Aligned_cols=164 Identities=14% Similarity=0.093 Sum_probs=89.9
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhcc--ccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMG--RNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~--~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
.+.+--|+-+|+.+..+....-.+... .. ..+..++..+. +++..+.-+++.|.|+-.+..+...+......+-..
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~-~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQ-NLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhh-HHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 455666777776655544322222210 11 24445555554 566777888888988866643333332222222222
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCC--CCcchHHHHhhCcHHHHHHHhhcc---cchhhhHHHHHHHHHHHcCChhhHHH
Q 014913 244 IQVLHDHISQQASKSALEVLVNICP--WGRNRIKGVEAGAVSILIDLLLDS---SLERRASEMILTVLDLLCQCAEGRAE 318 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~--~~~n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~~~a~~~L~~La~~~~~~~~ 318 (416)
+--.+...+..++.+-+....|++. ..++-+ .|..+.|...+... ..+-+..-..+.||.+|+..+....+
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 2222333244555555555556653 222222 45555555555422 12445677889999999998888877
Q ss_pred HHhcCCchHHHHHHHHhc
Q 014913 319 LLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 319 i~~~~~~v~~Lv~~l~~~ 336 (416)
+.. .-.+..+++.+...
T Consensus 712 ~A~-~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 712 LAK-NRSVDSIAKKLKEA 728 (745)
T ss_pred HHH-hcCHHHHHHHHHHh
Confidence 777 46688888877654
No 338
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.73 E-value=64 Score=34.86 Aligned_cols=69 Identities=14% Similarity=0.343 Sum_probs=48.9
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
.+..+..+..+-..+|..+...|..+...-+....+. ..+++......|++. +.-+--+|...+..||.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~-~ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ-GEKVLAIALDTLKDE-DSYVYLNAIRGVVSLCE 797 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHHhccc-CceeeHHHHHHHHHHHH
Confidence 3444555555667788888889998887544444443 448999999999988 77777788886666664
No 339
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.54 E-value=43 Score=35.50 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=67.8
Q ss_pred ccHHHHHH-HhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHH
Q 014913 197 FVDSLTQI-MQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIK 275 (416)
Q Consensus 197 ~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 275 (416)
+|..|+.. .+.+|.++|..|+-+|+-++..+ ....|..|.+|.+.-++.+|-.|+.||.--|.+..++..
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~d---------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA 625 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD---------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA 625 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecC---------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH
Confidence 66666666 56679999999999999887653 234577788888665889999999999988888777765
Q ss_pred HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 276 GVEAGAVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 276 i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
+ ..+.+ |..+. ..-++..|+-++.-+
T Consensus 626 i---~lLep---l~~D~--~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 626 I---NLLEP---LTSDP--VDFVRQGALIALAMI 651 (929)
T ss_pred H---HHHhh---hhcCh--HHHHHHHHHHHHHHH
Confidence 4 22333 33344 445666666666654
No 340
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.88 E-value=2.6 Score=25.46 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=8.1
Q ss_pred CCCCCCCCcc
Q 014913 45 NNTCPMTKQV 54 (416)
Q Consensus 45 ~~~CP~~~~~ 54 (416)
...||.|+..
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 6789999764
No 341
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=72.49 E-value=45 Score=38.21 Aligned_cols=142 Identities=14% Similarity=0.166 Sum_probs=93.8
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
+.+..++.+|... ...++..|+++|.++..-+.. +.. .+ +.-..+..-+...+..+|+.|
T Consensus 816 ~yLk~Il~~l~e~---------------~ialRtkAlKclS~ive~Dp~---vL~-~~-dvq~~Vh~R~~DssasVREAa 875 (1692)
T KOG1020|consen 816 PYLKLILSVLGEN---------------AIALRTKALKCLSMIVEADPS---VLS-RP-DVQEAVHGRLNDSSASVREAA 875 (1692)
T ss_pred HHHHHHHHHhcCc---------------hHHHHHHHHHHHHHHHhcChH---hhc-CH-HHHHHHHHhhccchhHHHHHH
Confidence 5677888888865 588999999999998865532 222 23 355556666777889999999
Q ss_pred HHHHHHhhccc-CchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccch
Q 014913 217 VLLLKSMLEVA-EPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLE 295 (416)
Q Consensus 217 ~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~ 295 (416)
...++...... +.-.+ .-..+..=..+. ...+|+.+.+.|+.+|...++-..++ ...+++|..-.++
T Consensus 876 ldLvGrfvl~~~e~~~q------yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 876 LDLVGRFVLSIPELIFQ------YYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDE 943 (1692)
T ss_pred HHHHhhhhhccHHHHHH------HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccc
Confidence 99999765321 21111 223333333344 68999999999999998776554443 3445555543323
Q ss_pred hh-hHHHHHHHHHHHc
Q 014913 296 RR-ASEMILTVLDLLC 310 (416)
Q Consensus 296 ~~-~~~~a~~~L~~La 310 (416)
++ +++-+..++..+=
T Consensus 944 Eg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 944 EGNIKKLVRETFLKLW 959 (1692)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 44 7888888877773
No 342
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=72.44 E-value=2.1 Score=24.33 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=5.1
Q ss_pred cCcCccccC
Q 014913 11 LCPISLAIM 19 (416)
Q Consensus 11 ~Cpic~~~~ 19 (416)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466666544
No 343
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=72.24 E-value=3 Score=40.30 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=24.0
Q ss_pred cCCcCcc-----cHHHHHHHHHcC-----------CCCCCCCCCcccc
Q 014913 25 VPTGITY-----DRESIEKWLFAG-----------KNNTCPMTKQVLS 56 (416)
Q Consensus 25 l~cght~-----c~~ci~~~~~~~-----------~~~~CP~~~~~l~ 56 (416)
-+|+..| |..|+-+||... ++..||.|++.+.
T Consensus 304 ~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 304 PPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred CCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3566666 558999998753 3567999999886
No 344
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.16 E-value=21 Score=29.34 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=56.6
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch-hhHhhhhhHHHHHHHHhccCCChH-HHHHHHHHHHHhCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM-QLISLRQELFVEVIQVLHDHISQQ-ASKSALEVLVNICP 268 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~~-~~~~A~~aL~nLs~ 268 (416)
.++..|-+-|+++++.++..|..+|-.+..+.... ...+.+.+.+..|+++++...+.. +++.++..+.+-+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 37788888999999999999999999998775433 233445589999999998763434 88888888887654
No 345
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.11 E-value=44 Score=31.60 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=85.3
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~ 317 (416)
++...+..|.+. +++.+-.++..|..|+.. .+....+... +|..+++-+++. ...+...|+.++..|...-.+..
T Consensus 89 al~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~-vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHE-VIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778887 889999999999998764 3444444433 788888888887 67788889999999877544433
Q ss_pred HHHhcCCchHHHHHHHH-hcCh---hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHH
Q 014913 318 ELLKHGAGLAIVSKKIL-RVSQ---VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKARE 391 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~-~~~~---~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ 391 (416)
.-. ...++..|+ +.+. =+.+-|-.+|..+..+..- .-+++.|+..++.. .+.++.++..
T Consensus 165 ~~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------~~~L~~L~~~~~~~-n~r~r~~a~~ 227 (334)
T KOG2933|consen 165 DQE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------QKLLRKLIPILQHS-NPRVRAKAAL 227 (334)
T ss_pred HHH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------HHHHHHHHHHHhhh-chhhhhhhhc
Confidence 222 223333333 3322 2477778888877766542 23455555555553 5666666554
No 346
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.80 E-value=3.7 Score=27.87 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.6
Q ss_pred cccCcCccccC--CCceec--CCcCcccHHHH
Q 014913 9 FFLCPISLAIM--KDPVTV--PTGITYDRESI 36 (416)
Q Consensus 9 ~~~Cpic~~~~--~~Pv~l--~cght~c~~ci 36 (416)
.-+|++|++.| .|.++. .||-.|=|.|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 35899999999 788776 69999999884
No 347
>PRK14707 hypothetical protein; Provisional
Probab=71.12 E-value=2.5e+02 Score=34.12 Aligned_cols=219 Identities=12% Similarity=0.029 Sum_probs=110.9
Q ss_pred CChHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 93 INKAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 93 ~~~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
++...+...+..|++ +......|...|..-..++++.++.+--- +|..+++-|+.-. +..+..
T Consensus 370 l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWP--------------d~~~C~ 434 (2710)
T PRK14707 370 LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWP--------------DLPICG 434 (2710)
T ss_pred cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCC--------------cchhHH
Confidence 445566667777753 44777778888888777777777776544 4777888887762 456777
Q ss_pred HHHHHHH-hcCCChhhhhhhhccccCCccHHHHHHHhc-CC-HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 171 EALSILC-NLKISELGLKSLVMGRNGTFVDSLTQIMQR-GT-YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 171 ~A~~~L~-~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
.|+..|. .++.+.+ ..+-+. + ..|...++-|+. ++ +..++.|-.....|+.+.+ -...+.-.++...|-.+-
T Consensus 435 ~aa~~lA~~la~d~~-l~~~~~--p-~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~-l~~a~~~q~~~~~L~aLS 509 (2710)
T PRK14707 435 QAVSALAGRLAHDTE-LCKALD--P-INVTQALDALSKWPDTPICGQTASALAARLAHERR-LRKALKPQEVVIALHSLS 509 (2710)
T ss_pred HHHHHHHHHHhccHH-HHhhcC--h-HHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH-HHhhcCHHHHHHHHHHhh
Confidence 7777776 4554443 333333 3 355555666654 33 3333433333334554333 222233334444444444
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchH
Q 014913 248 HDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLA 327 (416)
Q Consensus 248 ~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~ 327 (416)
+-+....+.+.+.+.-..+.....-...|-..++.-.|=.+-+.. +....+.++..|..+.........-.. ...|.
T Consensus 510 K~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp--~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs 586 (2710)
T PRK14707 510 KWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWP--DKQLCAVAASGLAERLADEPQLPKDLH-RQGVV 586 (2710)
T ss_pred cCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCC--chhHHHHHHHHHHHHhhcchhhHHhhh-hhHHH
Confidence 444234455555555555554333333333332222222222232 344455555555554332222222222 34455
Q ss_pred HHHHHHH
Q 014913 328 IVSKKIL 334 (416)
Q Consensus 328 ~Lv~~l~ 334 (416)
.+++.+.
T Consensus 587 ~llNaLS 593 (2710)
T PRK14707 587 IVLNALS 593 (2710)
T ss_pred HHHHhhc
Confidence 5555443
No 348
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.90 E-value=19 Score=27.59 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=55.3
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
.++..+..|+++.+.+|.++...|..|....+ .......+.+..+...|+++ +.-+--+|...|..|+...
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHC
Confidence 45566777788888899999999999987655 23333457888888899988 8888889999999887643
No 349
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=70.73 E-value=22 Score=29.67 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=59.3
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh-HhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL-ISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPW 269 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 269 (416)
.++..|.+.|.++++.++..|..+|-.+..+...... .+.+.+.+..|++++....+..+++..+..|...+..
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3778888889999999999999999999977663322 3345589999999998844889999999999887643
No 350
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=70.58 E-value=15 Score=30.86 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=51.6
Q ss_pred CCCCCChHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcc
Q 014913 89 PKPPINKAQITKLLNEAAKSP-QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSR 167 (416)
Q Consensus 89 ~~~~~~~~~i~~lv~~l~~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~ 167 (416)
|.-|+++++...++..|+..+ ......+.-|.+-..-+. --..-++++++..+++==... ..-
T Consensus 15 pPlPL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGV-D~AA~VKA~FL~~ia~g~~~~---------------~~I 78 (154)
T PF11791_consen 15 PPLPLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGV-DEAAYVKAEFLAAIAKGEISS---------------PLI 78 (154)
T ss_dssp ------HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT--HHHHHHHHHHHHHHTTSS-B---------------TTB
T ss_pred CCCCCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHHcCCccC---------------CCc
Confidence 334578999999999996444 222222332222211111 112233444444433221111 123
Q ss_pred hHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc
Q 014913 168 PVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV 226 (416)
Q Consensus 168 ~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~ 226 (416)
....|+..|..| .+ |--|++||++|.+.+.++...|+.+|.+-...
T Consensus 79 s~~~Av~LLGtM----------~G---GYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 79 SPAEAVELLGTM----------LG---GYNVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -HHHHHHHHTTS-----------S---STTHHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred CHHHHHHHHhhc----------cC---CCcHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 456666666533 22 23689999999998999999999999876543
No 351
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=70.49 E-value=1.4e+02 Score=31.05 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=79.6
Q ss_pred hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
.+++. +.+..++.-+.+.+..+|.+++.+|..++..-..-.... ..|.+..|..-+-+. .+-++..|+.+|..+
T Consensus 86 ~~~V~----~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l-~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~ 159 (885)
T COG5218 86 EELVA----GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVL-ANGLLEKLSERLFDR-EKAVRREAVKVLCYY 159 (885)
T ss_pred hHHHH----HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHhcc-hHHHHHHHHHHHHHH
Confidence 46665 388899999999999999999999999985532222222 347777777766666 778999999999887
Q ss_pred CCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHH
Q 014913 267 CPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAEL 319 (416)
Q Consensus 267 s~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i 319 (416)
-....|-... .+..|+.+++.++ +.+++. .+|.|+..++..+.-+
T Consensus 160 Qe~~~neen~----~~n~l~~~vqnDP-S~EVRr---~allni~vdnsT~p~I 204 (885)
T COG5218 160 QEMELNEENR----IVNLLKDIVQNDP-SDEVRR---LALLNISVDNSTYPCI 204 (885)
T ss_pred HhccCChHHH----HHHHHHHHHhcCc-HHHHHH---HHHHHeeeCCCcchhH
Confidence 5443333222 2346777787764 445554 4456666655544433
No 352
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=69.77 E-value=17 Score=27.83 Aligned_cols=70 Identities=14% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.....+..+.+ .+.+|..++..|+++..... ...+...+++..+...|+.+ ++=+--+|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---------------DsyVYL~aI~ 65 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---------------DSYVYLNAIK 65 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---------------CchHHHHHHH
Confidence 445566777743 35899999999999998765 12222235666666777665 4678888999
Q ss_pred HHHhcCCC
Q 014913 175 ILCNLKIS 182 (416)
Q Consensus 175 ~L~~l~~~ 182 (416)
.|..|+..
T Consensus 66 ~L~~La~~ 73 (92)
T PF10363_consen 66 GLAALADR 73 (92)
T ss_pred HHHHHHHH
Confidence 99888743
No 353
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=69.70 E-value=66 Score=33.97 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=88.1
Q ss_pred hhHHHHHHHHhccC-CChHHHHHHHHHHHHhCCCCc---chHHH----Hh-----hCc----HHHHHHHhhcccchhhhH
Q 014913 237 QELFVEVIQVLHDH-ISQQASKSALEVLVNICPWGR---NRIKG----VE-----AGA----VSILIDLLLDSSLERRAS 299 (416)
Q Consensus 237 ~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~---n~~~i----~~-----~G~----v~~Lv~lL~~~~~~~~~~ 299 (416)
.|.+.-|+.++... ......+.-...|.+++.+.. .-+.+ ++ .|. ...++.+|.+. +--++
T Consensus 239 s~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdse--s~tlR 316 (1128)
T COG5098 239 SGLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSE--SFTLR 316 (1128)
T ss_pred HHHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhccc--chhHH
Confidence 35666666666643 244666677778888875443 11111 11 111 45577888776 66666
Q ss_pred HHHHHHHHHHcCChhhHHHHHhc-----CCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCC-ChHHHHHHHhcChHHHH
Q 014913 300 EMILTVLDLLCQCAEGRAELLKH-----GAGLAIVSKKILRVSQVASERAVRILLSISKFSA-TNSVLQEMLQIGVVAKL 373 (416)
Q Consensus 300 ~~a~~~L~~La~~~~~~~~i~~~-----~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~i~~~G~v~~L 373 (416)
-..+.+++|+..+-....+++++ ...+..|++.+...++-++..|+.++..++.-+. ...-+.+ ++...
T Consensus 317 c~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv 391 (1128)
T COG5098 317 CCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLV 391 (1128)
T ss_pred HHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHH
Confidence 66677777776532222233321 1234455555555677889999999988886543 1122333 33444
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHH
Q 014913 374 CLVLQVDNSMKTKDKAREVLKLH 396 (416)
Q Consensus 374 ~~ll~~~~~~~~k~~A~~ll~~l 396 (416)
.+-++.. +..+|++|.+++.-|
T Consensus 392 ~r~lqDr-ss~VRrnaikl~SkL 413 (1128)
T COG5098 392 GRRLQDR-SSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHH
Confidence 5556665 788899998876543
No 354
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=69.59 E-value=40 Score=28.67 Aligned_cols=143 Identities=11% Similarity=0.051 Sum_probs=77.2
Q ss_pred CccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchH
Q 014913 196 TFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRI 274 (416)
Q Consensus 196 ~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~ 274 (416)
..++.|.++|+++ +..+|..+..+|+.|-.-+..+.+.... ..+.-. -.+. +..... ..+.+....+ .-.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~--~~~~~~--~~~~-~~~~~~---~~l~~~~~~~-~~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQK--SLDSKS--SENS-NDESTD---ISLPMMGISP-SSE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccc--cCCccc--cccc-cccchh---hHHhhccCCC-chH
Confidence 3567788888876 7999999999999998776655543221 111000 0011 111111 1122221111 222
Q ss_pred HHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHH
Q 014913 275 KGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELLKHGAGLAIVSKKILRVSQVASERAVRILLS 350 (416)
Q Consensus 275 ~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~ 350 (416)
...-..++..|+++|++.+ -..-...++.++.++-.... ....... ..+|.+++.+....+..+|.-..-|..
T Consensus 81 e~y~~vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333457889999998763 23333456666666654322 2333333 678888887776665666654444433
No 355
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=68.69 E-value=1.7e+02 Score=31.40 Aligned_cols=92 Identities=20% Similarity=0.109 Sum_probs=65.9
Q ss_pred HHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchH--HHHHHHHhcCh
Q 014913 262 VLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLA--IVSKKILRVSQ 338 (416)
Q Consensus 262 aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~--~Lv~~l~~~~~ 338 (416)
+|+++... +++...+.+.|++..+...+..- ...++...+++.|.+++...+.+...... .-+. .+-..+.+-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~-~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIF-EFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHhhcch
Confidence 88898764 46999999999999999999876 36789999999999999877665544331 1122 22222223333
Q ss_pred -hhhHHHHHHHHHHhcCC
Q 014913 339 -VASERAVRILLSISKFS 355 (416)
Q Consensus 339 -~~~~~a~~~L~~L~~~~ 355 (416)
+....|..+|..+..++
T Consensus 572 ~ersY~~~siLa~ll~~~ 589 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDS 589 (699)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 67788888888877753
No 356
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=68.67 E-value=3.5 Score=33.70 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=31.2
Q ss_pred cccCcCccccCCC--cee-cCCcCc------ccHHHHHHHHHcCCCCCCCCCCc
Q 014913 9 FFLCPISLAIMKD--PVT-VPTGIT------YDRESIEKWLFAGKNNTCPMTKQ 53 (416)
Q Consensus 9 ~~~Cpic~~~~~~--Pv~-l~cght------~c~~ci~~~~~~~~~~~CP~~~~ 53 (416)
..-|.||.+...+ =|+ ++||.+ ||..|+.+|-++ ....|.=+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~--~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE--RNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh--ccCCCcccc
Confidence 5679999988887 554 478755 999999999654 345565443
No 357
>PLN02436 cellulose synthase A
Probab=68.64 E-value=4.2 Score=44.61 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=35.0
Q ss_pred ccCcCccccC-----CCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIM-----KDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~-----~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|.||++-. -+|.+. .||.-.|+.|.+-=.++ ++..||.|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e-g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE-GNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc-CCccCcccCCchh
Confidence 3899999643 346654 69999999999554444 4899999998886
No 358
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=68.20 E-value=1e+02 Score=28.62 Aligned_cols=144 Identities=12% Similarity=0.088 Sum_probs=83.7
Q ss_pred hhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc--------chHHHHhhCcHHHHHHHhhcccch----hhhHHHHHH
Q 014913 237 QELFVEVIQVLHDHISQQASKSALEVLVNICPWGR--------NRIKGVEAGAVSILIDLLLDSSLE----RRASEMILT 304 (416)
Q Consensus 237 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~--------n~~~i~~~G~v~~Lv~lL~~~~~~----~~~~~~a~~ 304 (416)
.|.-+.+++=|.+. .+.+.+...|..|...++ +|-.+.=-+.+|.++.-+..+ . ......++.
T Consensus 63 ~Glq~Ll~KGL~Ss---~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~--~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 63 EGLQPLLLKGLRSS---STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP--NPIQPDQECIEIAE 137 (262)
T ss_pred hhHHHHHhCccCCC---CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHH
Confidence 35444455545544 567778888888876443 333333345677777777665 3 134456667
Q ss_pred HHHHHcCChhhHHHHHhcCCchHHHHHHHHhc-ChhhhHHHHHHHHHHhcCC-CChHHHHHHHhcChHHHHHHHHhcCCc
Q 014913 305 VLDLLCQCAEGRAELLKHGAGLAIVSKKILRV-SQVASERAVRILLSISKFS-ATNSVLQEMLQIGVVAKLCLVLQVDNS 382 (416)
Q Consensus 305 ~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~-~~~~~~~a~~~L~~L~~~~-~~~~~~~~i~~~G~v~~L~~ll~~~~~ 382 (416)
.|..+|... . ...+..++....++ -....+....+...|+..- ++ .....+..|+++|.+ +.
T Consensus 138 ~La~~a~~~-------~-~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-------~~~~~l~~Ll~lL~n-~~ 201 (262)
T PF14225_consen 138 ALAQVAEAQ-------G-LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-------HEFQILTFLLGLLEN-GP 201 (262)
T ss_pred HHHHHHHhC-------C-CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHhC-Cc
Confidence 888887321 1 12333333322222 2234444444555555432 21 124577889999976 58
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 014913 383 MKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 383 ~~~k~~A~~ll~~l~~~~~ 401 (416)
+..|..+..+|+.+-.+..
T Consensus 202 ~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 202 PWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 8999999999998888654
No 359
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.13 E-value=2.8 Score=38.44 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=33.6
Q ss_pred CCcccCcCccccCCCceecCC----cCcccHHHHHHHHHcC---CCCCCCC
Q 014913 7 PTFFLCPISLAIMKDPVTVPT----GITYDRESIEKWLFAG---KNNTCPM 50 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~c----ght~c~~ci~~~~~~~---~~~~CP~ 50 (416)
-..++|.+|.+.+.|--.+.| .|.||-.|-.+.++.. +...||.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 345899999999999876655 6999999988888753 2345554
No 360
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=67.94 E-value=3.3 Score=34.83 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=11.1
Q ss_pred CCCCCCCCCcccc
Q 014913 44 KNNTCPMTKQVLS 56 (416)
Q Consensus 44 ~~~~CP~~~~~l~ 56 (416)
+.+.||.|+..+.
T Consensus 122 ~~f~Cp~Cg~~l~ 134 (147)
T smart00531 122 GTFTCPRCGEELE 134 (147)
T ss_pred CcEECCCCCCEEE
Confidence 3589999999986
No 361
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=67.93 E-value=2.6 Score=39.22 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=27.5
Q ss_pred cCcCccccCCCc-eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDP-VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~P-v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+|.-|.....-= -+++|.|+||..|-.. +. .+.||.|...+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~-dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARS---DS-DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhc---Cc-cccCcCcccHHH
Confidence 466665433221 2679999999999432 22 578999976654
No 362
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=67.78 E-value=3.4 Score=29.07 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=9.7
Q ss_pred cccHHHHHHHHHc
Q 014913 30 TYDRESIEKWLFA 42 (416)
Q Consensus 30 t~c~~ci~~~~~~ 42 (416)
.|||.|+.+|..+
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
No 363
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=66.42 E-value=4.9 Score=44.19 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=34.4
Q ss_pred cCcCcccc-----CCCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAI-----MKDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~-----~~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.||++- .-+|.+. .||.-.||.|.+-=.++ |+..||.|+..++
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e-G~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD-GNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc-CCccCCccCCchh
Confidence 89999964 3346654 79999999998543444 5899999998886
No 364
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=65.85 E-value=4.1 Score=32.89 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=12.1
Q ss_pred CCCCCCCCcccCcCccccCCC
Q 014913 1 MEEIDVPTFFLCPISLAIMKD 21 (416)
Q Consensus 1 ~~~~~~~~~~~Cpic~~~~~~ 21 (416)
|...++-....||-|+..|+|
T Consensus 1 m~k~elGtKr~Cp~cg~kFYD 21 (129)
T TIGR02300 1 MAKPDLGTKRICPNTGSKFYD 21 (129)
T ss_pred CCchhhCccccCCCcCccccc
Confidence 445555566677766655543
No 365
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=14 Score=32.77 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=35.6
Q ss_pred cCcCccccCC--CceecCCcCcccHHHHHHHHHcC------CCCCCCCCCcccc
Q 014913 11 LCPISLAIMK--DPVTVPTGITYDRESIEKWLFAG------KNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~--~Pv~l~cght~c~~ci~~~~~~~------~~~~CP~~~~~l~ 56 (416)
-|.+|...+. |-+-+-|-|.|=..|+..|-..- ....||.|.+++-
T Consensus 52 NC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 52 NCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 5888887664 56667999999999999997641 2468999977653
No 366
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=65.26 E-value=6.1 Score=33.67 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=11.0
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
.|.||.|+.++.
T Consensus 128 ~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 128 NFTCPRCGAMLD 139 (158)
T ss_pred CCcCCCCCCEee
Confidence 699999999987
No 367
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.37 E-value=3.4 Score=27.22 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=21.7
Q ss_pred CcCccccCCC--ceecCCcCc-----ccHHHHHHHHHcCCCCCCCCC
Q 014913 12 CPISLAIMKD--PVTVPTGIT-----YDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 12 Cpic~~~~~~--Pv~l~cght-----~c~~ci~~~~~~~~~~~CP~~ 51 (416)
|-||.+--.+ |.+.||+-+ .=+.|+++|+...+...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 4455543332 567777532 224699999987557789876
No 368
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=64.11 E-value=66 Score=24.93 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHh-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLE-SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKS 188 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 188 (416)
++|..|+..|..-..++--.-..+. ..+.+..|+.-++.. .....+.++..|..+..++.....
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~---------------~~~~~~~VL~Ll~~L~~~~~a~~~ 66 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP---------------PVPMKEEVLALLLRLLKSPYAAQI 66 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC---------------CCccHHHHHHHHHHHHhCcHHHHH
Confidence 5677777655544333322333333 335555666666555 355788999999999998876544
Q ss_pred hhccccCCccHHHHHHHhcCCHHHHHHHHHHH
Q 014913 189 LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLL 220 (416)
Q Consensus 189 ~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L 220 (416)
+.. -| +.+.|-++-..-++..+...-.++
T Consensus 67 l~~--iG-~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 67 LRD--IG-AVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHH--cc-HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 443 64 888866655444555555443333
No 369
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=63.96 E-value=1e+02 Score=33.28 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=84.5
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-Chh
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAE 314 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~ 314 (416)
..-..+...+.++ +....+..+.++.+++.-.. .+. ...-.++-..-.... -..+.+....+|..++. .++
T Consensus 441 ~lW~~l~~~~~~~-~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~--~~~~~~~~~~il~rls~~~~~ 514 (727)
T PF12726_consen 441 NLWKALLKSLDSD-NPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKS--LGQITDLISQILERLSDFDPS 514 (727)
T ss_pred HHHHHHHHhhcCC-ChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHH--HHHHHHHHHHHHHHHhcCCHH
Confidence 3445566666666 77888888888888876443 222 111122222222222 34567778889999987 577
Q ss_pred hHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHh
Q 014913 315 GRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQ 366 (416)
Q Consensus 315 ~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 366 (416)
....+..+.++..+++.++.+...+..+.|..+|.......+..+..+.+.+
T Consensus 515 ~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 515 HLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7888888889999999999998899999999999999976654444444444
No 370
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=63.90 E-value=3.4 Score=27.71 Aligned_cols=13 Identities=38% Similarity=0.904 Sum_probs=10.8
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4789999999974
No 371
>PRK04023 DNA polymerase II large subunit; Validated
Probab=63.80 E-value=6.4 Score=42.81 Aligned_cols=45 Identities=9% Similarity=-0.110 Sum_probs=31.5
Q ss_pred CcccCcCccccCCCceecCCcC-----cccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGI-----TYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cgh-----t~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..++||-|+........-.||. .||..| .+. .+...||.|+....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~--~~~y~CPKCG~El~ 674 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE--VEEDECEKCGREPT 674 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc--CCCCcCCCCCCCCC
Confidence 4578999998864444446884 499999 211 12567999998876
No 372
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.70 E-value=2.9e+02 Score=32.22 Aligned_cols=221 Identities=15% Similarity=0.120 Sum_probs=119.4
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhh----------cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLES----------AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCN 178 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~----------~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~ 178 (416)
..+..+|+..+|.-+..+.-.-+.|-+ ...||.+.++++++.. -..+..++..+..
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVg--------------l~Tkvg~A~fI~~ 1262 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVG--------------LGTKVGCASFISL 1262 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCC--------------CCcchhHHHHHHH
Confidence 355566777777644433223333221 2578888888887742 2223334444433
Q ss_pred cCCC-hhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHH
Q 014913 179 LKIS-ELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASK 257 (416)
Q Consensus 179 l~~~-~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 257 (416)
|+.. ..+.+...+ ..+..+...++.-+..++..-+.+.++|.........+ -.+..++.-+..+ ....++
T Consensus 1263 L~~r~~~emtP~sg----Kll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~q----KLie~~l~~~l~k-~es~~s 1333 (1702)
T KOG0915|consen 1263 LVQRLGSEMTPYSG----KLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQ----KLIETLLADLLGK-DESLKS 1333 (1702)
T ss_pred HHHHhccccCcchh----HHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHH----HHHHHHHHHHhcc-CCCccc
Confidence 3321 112233332 35666666667778899999999999998665443332 2445545444333 233336
Q ss_pred HHHHHHHHhCCCCcchHHHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc
Q 014913 258 SALEVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 258 ~A~~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~ 336 (416)
.++.++.+++.+.. ..+-+ +-+|-||+-+-.... +.+.++..=.+...+...+.+...... ...+-.+.....+.
T Consensus 1334 iscatis~Ian~s~--e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dvW~e~vsggagtvrl~~-~eiLn~iceni~nn 1409 (1702)
T KOG0915|consen 1334 ISCATISNIANYSQ--EMLKNYASAILPLIFLAMHEE-EKANQELWNDVWAELVSGGAGTVRLYL-LEILNLICENITNN 1409 (1702)
T ss_pred hhHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhCCCCcchhhhhH-HHHHHHHHHHhccc
Confidence 67777777655332 11111 234555665554431 244455555566667777766665544 23343444334433
Q ss_pred C-hhhhHHHHHHHHHHhcCCC
Q 014913 337 S-QVASERAVRILLSISKFSA 356 (416)
Q Consensus 337 ~-~~~~~~a~~~L~~L~~~~~ 356 (416)
. -..+..++.++..++.+..
T Consensus 1410 ~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1410 ESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred hHHHHHHHHHHHHHHHccccc
Confidence 3 3677888888888777554
No 373
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=63.45 E-value=43 Score=27.80 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=55.9
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh-hHhhhhhHHHHHHHHhcc-----CCChHHHHHHHHHHHHhCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ-LISLRQELFVEVIQVLHD-----HISQQASKSALEVLVNICP 268 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~nLs~ 268 (416)
.++..+.+.|+++++.++..|..+|-.+..+..... ..+...+.+..|++++.. ..+..+++..+..|..-+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 378888899999999999999999999987765432 333445899999999963 1367888888888876543
No 374
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.95 E-value=31 Score=36.22 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=67.1
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccc----cCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGR----NGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELF 240 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~----~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 240 (416)
+..++...+.++.|+..+-..-.+++... . ..+..|++.|...++-+|..|...+..+..-.. ......+..+
T Consensus 312 s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~-~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s--k~~~~r~ev~ 388 (1128)
T COG5098 312 SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLN-DLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS--KTVGRRHEVI 388 (1128)
T ss_pred chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHH-HHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc--cccchHHHHH
Confidence 46677777777777764322111232211 1 245566666677889999999999998875422 2233445688
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 241 VEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 241 ~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
...++-|++. +.-++++|...+..|-.
T Consensus 389 ~lv~r~lqDr-ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 389 RLVGRRLQDR-SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHh
Confidence 8888899988 88999999998888743
No 375
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=62.93 E-value=2.2e+02 Score=30.56 Aligned_cols=134 Identities=13% Similarity=0.038 Sum_probs=86.1
Q ss_pred CccHHHHHHHhc--------CCHHHHHHHHHHHHHhhc--ccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHH
Q 014913 196 TFVDSLTQIMQR--------GTYESRAYAVLLLKSMLE--VAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVN 265 (416)
Q Consensus 196 ~~i~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 265 (416)
|.++.+++.|.. .+....+-|.+.+.++.+ .......-+.+.=.++.++-.+++. ..-++..|+..+..
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~-ygfL~Srace~is~ 486 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSN-YGFLKSRACEFIST 486 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCc-ccchHHHHHHHHHH
Confidence 399999999932 234555667777777765 2122222122212344445566776 77888899999998
Q ss_pred hCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC
Q 014913 266 ICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS 337 (416)
Q Consensus 266 Ls~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~ 337 (416)
++.+-...... ..+.......+.+. +-.+.-.|+.||.-+-.+.....++..| ||..|+.|++.+
T Consensus 487 ~eeDfkd~~il--l~aye~t~ncl~nn--~lpv~ieAalAlq~fi~~~q~h~k~sah---Vp~tmekLLsLS 551 (970)
T COG5656 487 IEEDFKDNGIL--LEAYENTHNCLKNN--HLPVMIEAALALQFFIFNEQSHEKFSAH---VPETMEKLLSLS 551 (970)
T ss_pred HHHhcccchHH--HHHHHHHHHHHhcC--CcchhhhHHHHHHHHHhchhhhHHHHhh---hhHHHHHHHHhc
Confidence 85443322222 33566667777776 6778888999999888877777777664 677777777654
No 376
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=62.14 E-value=3.3 Score=27.31 Aligned_cols=13 Identities=38% Similarity=0.904 Sum_probs=7.9
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 4789999999974
No 377
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=61.92 E-value=1.1e+02 Score=26.71 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHH----HhhcccchhhhHHHHHHHHHHHcCC
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILID----LLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~----lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
.-..|+..|+.+.+..+....+++|..|..... +|-. .|.++.++. ++.+. |..++..++.++..|...
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~--d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHR--DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcC
Confidence 445677777766577888899999999977665 3332 355555444 44555 888999999998888654
No 378
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=61.87 E-value=4.1 Score=37.44 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=32.5
Q ss_pred CCcccCcCccccCCC--------ce-ecCCcCcccHHHHH-HHHHcC--------CCCCCCCCCccccCCCCC
Q 014913 7 PTFFLCPISLAIMKD--------PV-TVPTGITYDRESIE-KWLFAG--------KNNTCPMTKQVLSSECEL 61 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~--------Pv-~l~cght~c~~ci~-~~~~~~--------~~~~CP~~~~~l~~~~~l 61 (416)
+..|.|+.|..++.- -+ +++|-..+|-..+. -|+-++ ..|.||.|++.|.|+..+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNL 231 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNL 231 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHH
Confidence 566889999876543 11 23444444444333 233332 268999999998754444
No 379
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=61.57 E-value=8.4 Score=30.31 Aligned_cols=45 Identities=13% Similarity=0.092 Sum_probs=30.7
Q ss_pred ccCcCccccCCCceecC--------C---cCcccHHHHHHHHHcC-------CCCCCCCCCcc
Q 014913 10 FLCPISLAIMKDPVTVP--------T---GITYDRESIEKWLFAG-------KNNTCPMTKQV 54 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~--------c---ght~c~~ci~~~~~~~-------~~~~CP~~~~~ 54 (416)
-+|-.|.+--.+..+.. | .-.||..||..++.+. ....||.|+..
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 35777776555555332 3 5569999999987652 36789999764
No 380
>PF04641 Rtf2: Rtf2 RING-finger
Probab=61.50 E-value=7.4 Score=36.13 Aligned_cols=34 Identities=26% Similarity=0.590 Sum_probs=30.6
Q ss_pred cccCcCccccCCCceec-CCcCcccHHHHHHHHHc
Q 014913 9 FFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFA 42 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~ 42 (416)
-+.|+|+++.|.+||+. .-|+-|-+..|-.|+..
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 46899999999999976 68999999999999875
No 381
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=61.02 E-value=90 Score=28.23 Aligned_cols=140 Identities=10% Similarity=0.055 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhcccCchhhHhhhhh---HHHHHHHHhcc-CCChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHH
Q 014913 214 AYAVLLLKSMLEVAEPMQLISLRQE---LFVEVIQVLHD-HISQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILID 287 (416)
Q Consensus 214 ~~a~~~L~~l~~~~~~~~~~~~~~g---~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~ 287 (416)
-+|..+|--++++.+-+...... . .+-+.....++ ..-.-.+-.+++.|..|..+++ ....+..-.+||.+++
T Consensus 118 cnaL~lLQclaShPetk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 34455555666665555444332 2 22222333332 2123567788999999988775 5666777899999999
Q ss_pred HhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh---cCCc----hHHHHHHHHh-cChhhhHHHHHHHHHHhcCCC
Q 014913 288 LLLDSSLERRASEMILTVLDLLCQCAEGRAELLK---HGAG----LAIVSKKILR-VSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 288 lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~---~~~~----v~~Lv~~l~~-~~~~~~~~a~~~L~~L~~~~~ 356 (416)
++..+ ++-.+..|+-++.-+-.++.+-.-+.. .-.+ +..++..+.+ ++.+.-.+++.+-..||....
T Consensus 197 Ime~g--SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 197 IMELG--SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHhh--hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 99998 777788888888877776665432211 1122 2333333333 244777888888888886543
No 382
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=60.37 E-value=3.2e+02 Score=31.91 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHhh
Q 014913 213 RAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLLL 290 (416)
Q Consensus 213 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL~ 290 (416)
..+|.++...++...+.. ..-.+.+..++..|.++ ...+|..|+++|.++...+. -....++.|+...+.
T Consensus 794 ~~~a~li~~~la~~r~f~---~sfD~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~---- 865 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFS---QSFDPYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN---- 865 (1692)
T ss_pred chhHHHHHHHHHhhhHHH---HhhHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc----
Confidence 455666666666442221 22347888899999987 89999999999999987665 334556666555443
Q ss_pred cccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCC
Q 014913 291 DSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 291 ~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
+. ...++|.|+..+..-.. .++.-.+... .+.+-+...+-.++.+++.+|..+|...++
T Consensus 866 Ds--sasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 866 DS--SASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred cc--hhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 23 56789999998885433 3433333332 344455656668999999999999987775
No 383
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.36 E-value=7.2 Score=37.41 Aligned_cols=46 Identities=30% Similarity=0.497 Sum_probs=36.9
Q ss_pred ccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+.|.|+++.|-| |+..|-|++|-...|++|-... .-.||.+++.+.
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~-~i~dP~~~k~f~ 379 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD-GIGDPRTKKVFR 379 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccC-CCcCCCCCcccc
Confidence 567777777765 8889999999999999985543 378999988876
No 384
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.98 E-value=64 Score=27.53 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=71.0
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhC--cHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAG--AVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G--~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~ 315 (416)
..+..+..+|++. +...+-.++..+..++...+ ...+.+.| -+..|+.+|+... +..+++.++.+|..|...-.+
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhcC
Confidence 5677788889888 77888888887777766543 24444433 4677888887752 667888888888888653333
Q ss_pred ----HHHHHhcCCchHHHHHHHHhcCh--hhhHHHHHHHHHHhcCC
Q 014913 316 ----RAELLKHGAGLAIVSKKILRVSQ--VASERAVRILLSISKFS 355 (416)
Q Consensus 316 ----~~~i~~~~~~v~~Lv~~l~~~~~--~~~~~a~~~L~~L~~~~ 355 (416)
.+++.. --++.++..+..... ...+.+..+|..+-...
T Consensus 102 ~p~l~Rei~t--p~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 102 KPTLTREIAT--PNLPKFIQSLLQLLQDSSCPETALDALATLLPHH 145 (165)
T ss_pred CCchHHHHhh--ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHC
Confidence 333332 235555555554333 55666666666655543
No 385
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=59.90 E-value=63 Score=34.07 Aligned_cols=132 Identities=9% Similarity=0.125 Sum_probs=85.1
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHH
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKG 276 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 276 (416)
.++.|...++..+..+|+.+...+..++..-+. .. +..-.+|.|-.+.....+..++.+++.++..|... -.+..+
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~~-vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~-lD~~~v 465 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESIDV--PF-VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR-LDKAAV 465 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--HH-HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH-HHHHHh
Confidence 667777777778899999999999988865442 22 23357777777654443778889999999888711 122222
Q ss_pred HhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC
Q 014913 277 VEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS 337 (416)
Q Consensus 277 ~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~ 337 (416)
++ -+.++.+-.+.. ++.++...+.+..++.....+...+.. ...+|.++-+.....
T Consensus 466 ~d--~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~~~~g~ev~~-~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 466 LD--ELLPILKCIKTR--DPAIVMGFLRIYEALALIIYSGVEVMA-ENVLPLLIPLSVAPS 521 (700)
T ss_pred HH--HHHHHHHHhcCC--CcHHHHHHHHHHHHHHhhcccceeeeh-hhhhhhhhhhhhccc
Confidence 22 244455555454 788999888888888765444333333 477777776444433
No 386
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=59.29 E-value=6.4 Score=29.89 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.9
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.-.|-+|..-..+| |+.||..|-.+ ...|..|++.+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAYk------kGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAYK------KGICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhcc------cCcccccCCeec
Confidence 44799998866665 88999999432 568999999885
No 387
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=59.23 E-value=7 Score=42.90 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=34.8
Q ss_pred ccCcCcccc-----CCCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAI-----MKDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~-----~~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|.||++- .-+|.+. .||.-.|+.|.+-=.++ ++..||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~-g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSE-GNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhc-CCccCCccCCchh
Confidence 479999964 3446654 79999999998543444 5899999998886
No 388
>PF15616 TerY-C: TerY-C metal binding domain
Probab=59.16 E-value=5 Score=32.82 Aligned_cols=39 Identities=21% Similarity=0.082 Sum_probs=28.7
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.||-|+.-+-=.+. .||+.+|. ...+..+||-|++...
T Consensus 78 PgCP~CGn~~~fa~C-~CGkl~Ci-------~g~~~~~CPwCg~~g~ 116 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC-GCGKLFCI-------DGEGEVTCPWCGNEGS 116 (131)
T ss_pred CCCCCCcChhcEEEe-cCCCEEEe-------CCCCCEECCCCCCeee
Confidence 359999986554444 89999984 3334789999988765
No 389
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=58.68 E-value=1.8e+02 Score=30.51 Aligned_cols=94 Identities=14% Similarity=0.206 Sum_probs=57.8
Q ss_pred ccHHHHHHHh----cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC--CChHHHHHHHHHHHHhCCCC
Q 014913 197 FVDSLTQIMQ----RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH--ISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 197 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~nLs~~~ 270 (416)
.++.|...|. .++.+.+..+..+|+|+-. ...++.|..++... .+...+..|++||..+....
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 6777777766 3567778888889988842 24677777777644 35678888888888774332
Q ss_pred cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHH
Q 014913 271 RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDL 308 (416)
Q Consensus 271 ~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~ 308 (416)
.. -+.+.|+.+..+...+.+++-.|..+|..
T Consensus 556 ~~-------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 556 PE-------KVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp HH-------HHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cH-------HHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 21 23466777777664355655555544443
No 390
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=58.59 E-value=51 Score=32.17 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=66.6
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
.++..+++.|...++.+.-.|+..|-.+..+.+. .++.++.+.....-|..++.+..-++++++-+.+++..+.-+...
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~-~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGK-RFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch-HHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 4566777777777889999999999999888774 689999999999999999975567888888888888888876666
Q ss_pred CCC
Q 014913 404 PCV 406 (416)
Q Consensus 404 ~~~ 406 (416)
|.+
T Consensus 124 p~l 126 (462)
T KOG2199|consen 124 PSL 126 (462)
T ss_pred cch
Confidence 653
No 391
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.21 E-value=6.5 Score=36.30 Aligned_cols=26 Identities=12% Similarity=0.418 Sum_probs=20.7
Q ss_pred ccHHHHHHHHHcC-----------CCCCCCCCCcccc
Q 014913 31 YDRESIEKWLFAG-----------KNNTCPMTKQVLS 56 (416)
Q Consensus 31 ~c~~ci~~~~~~~-----------~~~~CP~~~~~l~ 56 (416)
.|++|+.+|+... |..+||.|++.+.
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5678999998642 4678999999876
No 392
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=57.67 E-value=45 Score=27.56 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=54.5
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch-hhHhhhhhHHHHHHHHhccCCChH---HHHHHHHHHHHhCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM-QLISLRQELFVEVIQVLHDHISQQ---ASKSALEVLVNICP 268 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~~---~~~~A~~aL~nLs~ 268 (416)
.++..|-+-|.++++.++..|..+|-.+..+.... ...+.....+..|++++.+..... +++.++..|...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 37778889999999999999999999998775322 223334479999999988652444 78888887776543
No 393
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=57.10 E-value=13 Score=21.08 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc
Q 014913 212 SRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH 248 (416)
Q Consensus 212 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 248 (416)
+|..|+++|..+.. ..++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 46788888887753 357888888875
No 394
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=56.83 E-value=2e+02 Score=28.09 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=53.7
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
...++..++.-|+.-+.+++....+.. .| .++.+++.+.. ++...-..++.++..+...+.....+....+.+..+
T Consensus 35 ~~s~Rr~sll~La~K~~~~~Fr~~~ra--~g-~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 35 SSSVRRSSLLELASKCADPQFRRQFRA--HG-LVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CccHHHHHHHHHHHHhCCHHHHHHHHH--cC-cHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 367888888888877778776666655 64 99999999954 444355555555555544434334444455677777
Q ss_pred HHHhc
Q 014913 244 IQVLH 248 (416)
Q Consensus 244 v~lL~ 248 (416)
++++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 88887
No 395
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=56.81 E-value=81 Score=29.56 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=45.7
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh-hHhhhhhHHH----HHHHHhc--------cCCChHHHHHHHHHH
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ-LISLRQELFV----EVIQVLH--------DHISQQASKSALEVL 263 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~----~Lv~lL~--------~~~~~~~~~~A~~aL 263 (416)
.+|+++.++++.+++.|..++.+|..+........ ......|... .|..+|. +. +......|-.+|
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHHHHHHH
Confidence 89999999999999999999999999986543332 1122223222 2333333 23 456666676777
Q ss_pred HHhC
Q 014913 264 VNIC 267 (416)
Q Consensus 264 ~nLs 267 (416)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 6663
No 396
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=55.78 E-value=10 Score=35.45 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCcccCcCccccC--------------CC---ce--ecCCcCcccHHHHHHHHHcC----C----CCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIM--------------KD---PV--TVPTGITYDRESIEKWLFAG----K----NNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~--------------~~---Pv--~l~cght~c~~ci~~~~~~~----~----~~~CP~~~~~l~ 56 (416)
+.+..||+|..+- -| |. ..||||..- .=.-.||++- | +..||.|...+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3467899998642 11 32 238999544 4455566641 1 457999987775
No 397
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.02 E-value=1e+02 Score=26.85 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 98 ITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 98 i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
++-++..|. .+..-+.-|...+..+.......|-.=+=.-.|.+|-+.|.+. ++++...++.+|
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr---------------~~~V~~~~L~~L 104 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR---------------DPEVFCATLKAL 104 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC---------------CHHHHHHHHHHH
Confidence 455666665 3457777888888888776222333322235677777777776 589999999999
Q ss_pred HhcCCChh
Q 014913 177 CNLKISEL 184 (416)
Q Consensus 177 ~~l~~~~~ 184 (416)
..|..+.+
T Consensus 105 q~Lv~~~~ 112 (183)
T PF10274_consen 105 QQLVTSSD 112 (183)
T ss_pred HHHHHhhh
Confidence 99865544
No 398
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=55.01 E-value=14 Score=29.15 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhh
Q 014913 257 KSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRA 298 (416)
Q Consensus 257 ~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~ 298 (416)
...+..|..|+..++--..+++.|+++.|++||... +.++
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He--N~DI 103 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE--NTDI 103 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC--Ccce
Confidence 456788889999999888899999999999999876 4443
No 399
>PLN02400 cellulose synthase
Probab=54.92 E-value=7.7 Score=42.75 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=34.2
Q ss_pred cCcCcccc-----CCCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAI-----MKDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~-----~~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.||++- .-+|.+. .||.-.||.|.+-=.++ |+..||.|+..++
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERke-Gnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKD-GTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheeccc-CCccCcccCCccc
Confidence 89999964 3346654 79999999998543334 5899999998886
No 400
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.63 E-value=2.7e+02 Score=28.96 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=83.6
Q ss_pred ccHHHHHHHhc----CCHHHHHHHHHHHHHhhcc----cCchhhHhhhhhHHHHHHHHhccC---CChHHHHHHHHHHHH
Q 014913 197 FVDSLTQIMQR----GTYESRAYAVLLLKSMLEV----AEPMQLISLRQELFVEVIQVLHDH---ISQQASKSALEVLVN 265 (416)
Q Consensus 197 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~n 265 (416)
.+..+..++.+ .+..++..|..+++.+... .+........ ..++.|...|.+. .+.+-+...+.+|.|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 55556666654 3556777777777777632 1111111222 5778887777532 144556677888887
Q ss_pred hCCCCcchHHHHhhCcHHHHHHHhh-cccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhcChhhhHH
Q 014913 266 ICPWGRNRIKGVEAGAVSILIDLLL-DSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRVSQVASER 343 (416)
Q Consensus 266 Ls~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~ 343 (416)
+-.. ..++.|...+. ....+..++..|+.+|..++. .++ ..-+.|+......+ ...|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~---------~v~~~l~~i~~n~~-e~~Ev 532 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR---------KVQEVLLPIYLNRA-EPPEV 532 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch---------HHHHHHHHHHcCCC-CChHH
Confidence 5442 23445555554 222256788899999998875 331 12233444333322 33333
Q ss_pred HHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcH
Q 014913 344 AVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSM 383 (416)
Q Consensus 344 a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~ 383 (416)
-+.+...|-...++ ...+..+...+..+.+.
T Consensus 533 RiaA~~~lm~t~P~---------~~~l~~ia~~l~~E~~~ 563 (574)
T smart00638 533 RMAAVLVLMETKPS---------VALLQRIAELLNKEPNL 563 (574)
T ss_pred HHHHHHHHHhcCCC---------HHHHHHHHHHHhhcCcH
Confidence 33344444444443 23456666666554433
No 401
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=54.44 E-value=1.2e+02 Score=24.68 Aligned_cols=125 Identities=15% Similarity=0.216 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhcCCCh--hhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc---------hhh----
Q 014913 168 PVDEALSILCNLKISE--LGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP---------MQL---- 232 (416)
Q Consensus 168 ~~~~A~~~L~~l~~~~--~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~---------~~~---- 232 (416)
++...+.++..++..+ +.+ + +.++.+++++++ ++........+|..+...-.. ++.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W-------p-~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~ 74 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW-------P-DFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKD 74 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS-------T-THHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC-------c-hHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHH
Confidence 4455556666665433 222 4 477777888776 455666666677666532111 111
Q ss_pred -Hh-hhhhHHHHHHHHhccCCC---hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHH
Q 014913 233 -IS-LRQELFVEVIQVLHDHIS---QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVL 306 (416)
Q Consensus 233 -~~-~~~g~i~~Lv~lL~~~~~---~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L 306 (416)
+. .....+..+.+++....+ .+..+.++.++......- ....+.+...++.+.++|.. +..++.|+.+|
T Consensus 75 ~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~-~~~~i~~~~~l~~~~~~l~~----~~~~~~A~~cl 148 (148)
T PF08389_consen 75 ALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI-PIELIINSNLLNLIFQLLQS----PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTTS----CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC-CHHHhccHHHHHHHHHHcCC----HHHHHHHHHhC
Confidence 00 112345555555654412 688889999999877733 44556777899999999954 46688887765
No 402
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=54.35 E-value=1.8e+02 Score=26.94 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Q 014913 368 GVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 368 G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~ 401 (416)
-++|.|++=|.++ +..+|.-+...|..+-..|.
T Consensus 208 ~~~p~LleKL~s~-~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 208 FAFPLLLEKLDST-SPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHCC
Confidence 5788888888775 77889888888888777554
No 403
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=53.56 E-value=14 Score=39.06 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=38.4
Q ss_pred CcccCcCcc--ccCCCceecCCcCc-----ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISL--AIMKDPVTVPTGIT-----YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~--~~~~~Pv~l~cght-----~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++..|-||. ..--||.--||.++ .=+.|+.+|...++...|-.|+.+++
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 557899987 56667876677654 45789999998777889999988876
No 404
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=53.51 E-value=17 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=45.3
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCcchHHHHhh-CcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 248 HDHISQQASKSALEVLVNICPWGRNRIKGVEA-GAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 248 ~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~-G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
.+. ++++++.|..++.+++.+.+||...+-. ..-..+++++.-. .+++-+.+..+|..+-.
T Consensus 338 a~~-n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~--~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 338 AHK-NPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP--EPRVNKAAARALAILGE 399 (763)
T ss_pred ccc-ChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc--ccccchhhhHHHHHhhh
Confidence 355 8899999999999999999988866543 3444566777665 56667777777776654
No 405
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=53.02 E-value=1.8e+02 Score=33.07 Aligned_cols=189 Identities=13% Similarity=0.062 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHH-hCCCCcchHHHHhhCcHHHHHHH
Q 014913 210 YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVN-ICPWGRNRIKGVEAGAVSILIDL 288 (416)
Q Consensus 210 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n~~~i~~~G~v~~Lv~l 288 (416)
..+++.++++|..+..+.+... + ...+..+.+++... ..+.+.-.+..+.. ++...+.-..+. .-+++..++-
T Consensus 143 apVre~caq~L~~~l~~~~~s~-~---~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~ 216 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESL-I---KETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEG 216 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHh-h---HHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 4578888999988876633222 1 13567777888766 56666555444443 331111111111 1255666677
Q ss_pred hhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcCh--hhhHHHHHHHHHHhcCCCChHHHHHHH-
Q 014913 289 LLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQ--VASERAVRILLSISKFSATNSVLQEML- 365 (416)
Q Consensus 289 L~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~i~- 365 (416)
|.+. +..++..|+..|.-.+..--.....-. ...+..++..+....+ ......-..|..++.+.+--.+-...-
T Consensus 217 L~ds--~ddv~~~aa~~l~~~~s~~v~l~~~~i-~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~ 293 (1549)
T KOG0392|consen 217 LEDS--DDDVRSVAAQFLVPAPSIQVKLMVQKI-AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNL 293 (1549)
T ss_pred hhhc--chHHHHHHHHHhhhhhHHHHhhhHhHH-HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhh
Confidence 7776 778888888888777654311111100 1233444444433332 223333334445555432111111111
Q ss_pred hcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCCCCCc
Q 014913 366 QIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSPCVPE 408 (416)
Q Consensus 366 ~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~~~~~ 408 (416)
..|.+|.++.+++.. -...+..+-..+-.+.+.-.+|-|++.
T Consensus 294 ~~~Lvp~~~p~l~~~-i~sv~~a~l~~l~~lle~~~qs~~~~~ 335 (1549)
T KOG0392|consen 294 EVGLVPRLWPFLRHT-ISSVRRAALETLAMLLEADDQSDSWQI 335 (1549)
T ss_pred hhccchhhHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccch
Confidence 249999999999764 667777777777777776666666443
No 406
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=52.33 E-value=12 Score=39.39 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=10.3
Q ss_pred cCcCccccCCCceecCCcCcccHHH
Q 014913 11 LCPISLAIMKDPVTVPTGITYDRES 35 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~c~~c 35 (416)
.||-|+.. .+-|..||..|
T Consensus 3 ~Cp~Cg~~------n~~~akFC~~C 21 (645)
T PRK14559 3 ICPQCQFE------NPNNNRFCQKC 21 (645)
T ss_pred cCCCCCCc------CCCCCcccccc
Confidence 46666652 34455555555
No 407
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=52.06 E-value=13 Score=39.29 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=43.3
Q ss_pred CCCcccCcCccccCCCcee-cCCcCcccHHHH--HHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHH
Q 014913 6 VPTFFLCPISLAIMKDPVT-VPTGITYDRESI--EKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQS 73 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~-l~cght~c~~ci--~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~ 73 (416)
+.-.|.|||++..|+-|+- ..|+|-=|-... .+.-.+...+.||+|.+... .+.+..+..+..+...
T Consensus 303 ~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~-~e~l~iD~~~~~iL~~ 372 (636)
T KOG2169|consen 303 LRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP-FEGLIIDGYFLNILQS 372 (636)
T ss_pred ceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc-ccchhhhHHHHHHHhh
Confidence 3456899999999999985 589976554332 22212223688999987776 6666555554444433
No 408
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=51.80 E-value=77 Score=32.68 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=12.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhh
Q 014913 201 LTQIMQRGTYESRAYAVLLLKSML 224 (416)
Q Consensus 201 Lv~lL~~~~~~~~~~a~~~L~~l~ 224 (416)
|-.++...+.-+|+.|+-++.-+.
T Consensus 626 L~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 626 LEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHHH
Confidence 333344445555666655555443
No 409
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=51.13 E-value=8.8 Score=35.79 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=17.0
Q ss_pred cccCcCccccCC-Cceec--CCcCcccH
Q 014913 9 FFLCPISLAIMK-DPVTV--PTGITYDR 33 (416)
Q Consensus 9 ~~~Cpic~~~~~-~Pv~l--~cght~c~ 33 (416)
.|.||+|+..|. ++-.+ +.||+|..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 389999999885 12233 45788864
No 410
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.90 E-value=2.1 Score=40.51 Aligned_cols=44 Identities=18% Similarity=0.187 Sum_probs=21.1
Q ss_pred ccCcCccccCCCceecCC---c--CcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 10 FLCPISLAIMKDPVTVPT---G--ITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~c---g--ht~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
-.||||+..-.--++..- | |-+|..|=.+|--. ...||.|+..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCCCC
Confidence 589999986555545444 5 55798998888443 56899997654
No 411
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=50.76 E-value=10 Score=33.40 Aligned_cols=45 Identities=18% Similarity=0.439 Sum_probs=35.3
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..|.+|..+...=+.- +||-.|-+.|+..++.+ ...||.|+.-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhcccC
Confidence 3699999888776644 77777888899999976 678999976544
No 412
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=50.65 E-value=43 Score=35.73 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHH
Q 014913 65 HTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLAS 144 (416)
Q Consensus 65 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~ 144 (416)
+.+..+++.|...+...-++-+..-+.|.++.-...+=..+ ..+..|..++.-|..++...+..-..|.+.-.++.|++
T Consensus 39 ~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~-~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk 117 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYF-VKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLK 117 (668)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHH-cCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHH
Confidence 66788888887765432222122334444544443443444 67899999999999999998888899999999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcC
Q 014913 145 FVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLK 180 (416)
Q Consensus 145 lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~ 180 (416)
+|..+. +..+...|+.+|.-|-
T Consensus 118 ~L~~D~--------------~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 118 CLQFDT--------------SITVVSSALLVLIMLL 139 (668)
T ss_pred HHhhcc--------------cHHHHHHHHHHHHHHh
Confidence 998773 4667777777776543
No 413
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.37 E-value=2.9e+02 Score=28.08 Aligned_cols=116 Identities=13% Similarity=-0.027 Sum_probs=63.1
Q ss_pred hHHHHHHHHh----ccCCChHHHHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 238 ELFVEVIQVL----HDHISQQASKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 238 g~i~~Lv~lL----~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
|.+..++..+ +++ +...+..|++.|.|.+.. ++-+..... -.+..++.-|-++. +.+++-.++.+|..+...
T Consensus 254 ~lL~s~~~~la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~-~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDL-NEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccHHHHHHHHHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHh
Confidence 4444444443 345 668888999999999876 443333322 24555555555542 577888888888877665
Q ss_pred hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHH---HHHHhcCCC
Q 014913 313 AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRI---LLSISKFSA 356 (416)
Q Consensus 313 ~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~---L~~L~~~~~ 356 (416)
..++.-.----...-.+..+..+.+++.+-.|... |..++....
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~ 377 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW 377 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc
Confidence 44432211001122233333334455666555554 444555544
No 414
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=50.34 E-value=3.2e+02 Score=29.04 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=136.7
Q ss_pred HHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHh
Q 014913 100 KLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCN 178 (416)
Q Consensus 100 ~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~ 178 (416)
.++..+. .+.+++.+=...|.+... ..-+.|+..-++|.|+..+..+. .-...+..|..
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~g~-----------------a~~~~ltpl~k 317 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEFGD-----------------AASDFLTPLFK 317 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhccc-----------------cchhhhhHHHH
Confidence 3344443 455666665555555332 23455667777888888887662 11222333333
Q ss_pred cCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHH
Q 014913 179 LKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKS 258 (416)
Q Consensus 179 l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~ 258 (416)
+...-+. ..+. . +.++.|+++....+..+|-.-..-+-..... -...+..+ -..|.+..-+.+. +...++.
T Consensus 318 ~~k~ld~-~eyq---~-~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d-~I~phv~~G~~DT-n~~Lre~ 388 (690)
T KOG1243|consen 318 LGKDLDE-EEYQ---V-RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH--LTKQILND-QIFPHVALGFLDT-NATLREQ 388 (690)
T ss_pred hhhhccc-cccc---c-chhhhHHHHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcc-hhHHHHHhhcccC-CHHHHHH
Confidence 3222111 1222 3 4999999999999999988766666555433 22233333 6888888888887 8999999
Q ss_pred HHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcCh
Q 014913 259 ALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQ 338 (416)
Q Consensus 259 A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~ 338 (416)
.+.++.-|+.--.-+ . ..-.....+-.+-.+. +..++.+..-+|.-++..... .+++.-.+.++.+.+...-.
T Consensus 389 Tlksm~~La~kL~~~-~-Ln~Ellr~~ar~q~d~--~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~ 461 (690)
T KOG1243|consen 389 TLKSMAVLAPKLSKR-N-LNGELLRYLARLQPDE--HGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFV 461 (690)
T ss_pred HHHHHHHHHhhhchh-h-hcHHHHHHHHhhCccc--cCcccccceeeecccccccch---hhhccccchhhhhhhcCCCC
Confidence 999988876533222 1 1111223333333322 556676666666666554211 11212223344443443444
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHH
Q 014913 339 VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREV 392 (416)
Q Consensus 339 ~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~l 392 (416)
..+..++.+|+.....-...++. .-+++.+.-+.-. .....|..|-..
T Consensus 462 paR~a~v~~l~at~~~~~~~~va-----~kIlp~l~pl~vd-~e~~vr~~a~~~ 509 (690)
T KOG1243|consen 462 PARKAGVLALAATQEYFDQSEVA-----NKILPSLVPLTVD-PEKTVRDTAEKA 509 (690)
T ss_pred CchhhhhHHHhhcccccchhhhh-----hhccccccccccC-cccchhhHHHHH
Confidence 67777777777777665543332 2345555444422 234444444443
No 415
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.13 E-value=11 Score=37.92 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=30.0
Q ss_pred CCcccCcCccccCCC-ceecCCcCcccHHHHHHHHHc
Q 014913 7 PTFFLCPISLAIMKD-PVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~~~~ 42 (416)
.....|.||.+-..+ .+.+.|||.||..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345789999988875 556699999999999999876
No 416
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=49.19 E-value=89 Score=24.61 Aligned_cols=71 Identities=20% Similarity=0.173 Sum_probs=51.3
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHh-----cCCcHHHHHHHHHHHHHH
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQ-----VDNSMKTKDKAREVLKLH 396 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~-----~~~~~~~k~~A~~ll~~l 396 (416)
++..|.+.|.+.+...+-.|+.+|-.+..+.+. .+..++.+...+..++.+.. ..-+..+|+++..++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~-~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE-RFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-HHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 445566666667788999999999999998874 68888888777777665411 122567888888887754
No 417
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=48.83 E-value=94 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 282 VSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 282 v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
|.+||.+|.+. +..+...|+.+|.+...
T Consensus 96 V~~LI~~L~~~--d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSD--DEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G---TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCC--cHHHHHHHHHHHHhhHH
Confidence 67788888776 77888888888876644
No 418
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=48.72 E-value=1.4e+02 Score=24.10 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=60.2
Q ss_pred HHHHHHHHHHcCCh-hhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHh-cChHHHHHHHH
Q 014913 300 EMILTVLDLLCQCA-EGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQ-IGVVAKLCLVL 377 (416)
Q Consensus 300 ~~a~~~L~~La~~~-~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~-~G~v~~L~~ll 377 (416)
-....-|.+++... .....+ +..|.+.|.+.++.++-.++.+|-.||.... +.++..+.+ ...|..+..+-
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei------~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQEL------LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHH------HHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHHHHHcC
Confidence 34444555555542 333333 3457777777778899999999999999876 467777775 55555555543
Q ss_pred hc-------CCcHHHHHHHHHHHHHHHH
Q 014913 378 QV-------DNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 378 ~~-------~~~~~~k~~A~~ll~~l~~ 398 (416)
.. .....+|..|..++..+..
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 31 1244688999999988754
No 419
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=48.27 E-value=2.8e+02 Score=27.20 Aligned_cols=187 Identities=14% Similarity=0.101 Sum_probs=97.8
Q ss_pred CcHHHHHHHHHHHHHHhcChh--hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhh
Q 014913 108 SPQMQIKCLKKLRSIAAENET--NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELG 185 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~ 185 (416)
+...|..|...|.+..+..+. .+..+. .=++.+++.+..+-. ...+.++..+.++..+|+++|..+-.+.+-
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~----~~~~~~~p~~~~L~~qALkll~~~l~~~~i 79 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDIS----SSSSKGDPFDSRLVIQALKLLGFFLYHPEI 79 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHh----cccCCCCCcchHHHHHHHHHHHHHHccHHH
Confidence 447777777777776654431 222222 335556665554311 001111222568889999999988876654
Q ss_pred hhhhhccccCC-ccHHHHHHHhcC--CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc---c-CCChHHHHH
Q 014913 186 LKSLVMGRNGT-FVDSLTQIMQRG--TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH---D-HISQQASKS 258 (416)
Q Consensus 186 ~~~~i~~~~G~-~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~-~~~~~~~~~ 258 (416)
...+-.+.. . .+...+..|.++ +..+...+.++|..-... ..++. ...+..|+..+. + =.+..+...
T Consensus 80 ~~~l~~d~~-~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~----~~~~~-~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 80 VSTLSDDFA-SFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS----PKIMT-SDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred HhhCChHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC----Ccccc-hhhHHHHHHHHHHhhccCCchhHHHH
Confidence 433333221 1 355566666554 344555555555433222 11221 233444444443 2 125677778
Q ss_pred HHHHHHHhCCCCcchHHHHh-hC-cHHHHHHHhhcccchhhhHHHHHHHHHHHc
Q 014913 259 ALEVLVNICPWGRNRIKGVE-AG-AVSILIDLLLDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 259 A~~aL~nLs~~~~n~~~i~~-~G-~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La 310 (416)
++.++.+|-.... ..|++ .+ -+|.|+..+-+. ...++..|...+..+.
T Consensus 154 rL~i~~~ll~q~p--~~M~~~~~~W~~~l~~~l~~~--~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 154 RLNIYKRLLSQFP--QQMIKHADIWFPILFPDLLSS--AKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHH
Confidence 8888888765332 33444 22 567777777665 5566666666555554
No 420
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=48.25 E-value=4.8 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=7.1
Q ss_pred ccCcCccccCCCc
Q 014913 10 FLCPISLAIMKDP 22 (416)
Q Consensus 10 ~~Cpic~~~~~~P 22 (416)
|.||.|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 3466666555544
No 421
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.99 E-value=12 Score=33.66 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=36.3
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHH--HHHHcC-----CCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIE--KWLFAG-----KNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~--~~~~~~-----~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
....||+|...|+...+.+.+-..-+.=.. .....- ...+||.|+-...+.+.-.....-++.|......
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F~~l~~~~~~~i~~~i~~ 80 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDFEKLSPEQKEKIKENISS 80 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccccccCCHHHHHHHHHHHHh
Confidence 567999999999998766554432110000 000000 1357999998776222222233334444444333
No 422
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=47.25 E-value=2.7e+02 Score=26.76 Aligned_cols=169 Identities=12% Similarity=0.159 Sum_probs=106.1
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHHh-cChhhhhHHhhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 98 ITKLLNEAAK-SPQMQIKCLKKLRSIAA-ENETNKRCLESA--GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 98 i~~lv~~l~~-~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+..+-+.|.+ .+.....++.-|..++. ++....+.+.+. --.+.+.+++.........+... .+.. +.+|...+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~-~~~~-~siR~~fI 135 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSES-SKSK-PSIRTNFI 135 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccc-cccC-cCHHHHHH
Confidence 3344445532 34667788999999998 665566665553 34567778875442110000000 0001 37888888
Q ss_pred HH-HHhcCCChhh-hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHH-hhcccC----chhhHhhhhhHHHHHHHH
Q 014913 174 SI-LCNLKISELG-LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKS-MLEVAE----PMQLISLRQELFVEVIQV 246 (416)
Q Consensus 174 ~~-L~~l~~~~~~-~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~----~~~~~~~~~g~i~~Lv~l 246 (416)
.. |..+...+.. .+.++. +. +.+..+.+-|...+.++......+|.. +..+.. .+..+. ....+..|+.+
T Consensus 136 ~F~Lsfl~~~~~~~~~~lL~-~~-~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~f-n~~~L~~l~~L 212 (330)
T PF11707_consen 136 RFWLSFLSSGDPELKRDLLS-QK-KLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLF-NEWTLSQLASL 212 (330)
T ss_pred HHHHHHHccCCHHHHHHHHH-cC-chHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhc-CHHHHHHHHHH
Confidence 74 4444444443 455665 45 489999999999899999988888885 443322 222233 33688999998
Q ss_pred hccCCCh----HHHHHHHHHHHHhCCCCcc
Q 014913 247 LHDHISQ----QASKSALEVLVNICPWGRN 272 (416)
Q Consensus 247 L~~~~~~----~~~~~A~~aL~nLs~~~~n 272 (416)
.... +. .+.+.+-..|..+|.++.+
T Consensus 213 y~~~-~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 213 YSRD-GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred hccc-CCcccchHHHHHHHHHHHHhcCCCc
Confidence 7766 55 7888888999999987663
No 423
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.99 E-value=11 Score=28.38 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHc
Q 014913 30 TYDRESIEKWLFA 42 (416)
Q Consensus 30 t~c~~ci~~~~~~ 42 (416)
.|||.|+..|..+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 424
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=46.90 E-value=9.5 Score=34.48 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHHHHH----HHHcCCCCCCCCCCcccc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEK----WLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~----~~~~~~~~~CP~~~~~l~ 56 (416)
+.++.+++.|+-|.+-|.-||.-.|-...+.+-|.. |-.+ ++.|.+|.+++-
T Consensus 177 aRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHve--HFvCa~CekPFl 232 (332)
T KOG2272|consen 177 AREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVE--HFVCAKCEKPFL 232 (332)
T ss_pred hhhhccceeccccccccCCcccccccCchHHHHHHHhccccchh--heeehhcCCccc
Confidence 445777888888888888888777776666555533 2222 678888877664
No 425
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=46.59 E-value=5.1 Score=38.00 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=29.0
Q ss_pred ccCcCccccCCCceec----CCc--CcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 10 FLCPISLAIMKDPVTV----PTG--ITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l----~cg--ht~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
-.||||+..-.--++. .-| +-+|..|=..|--. ...||.|+..
T Consensus 185 ~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~~ 233 (305)
T TIGR01562 185 TLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV--RVKCSHCEES 233 (305)
T ss_pred CcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc--CccCCCCCCC
Confidence 4899999754333332 234 45788898888543 5689999864
No 426
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=46.48 E-value=1.5 Score=34.18 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=17.2
Q ss_pred cCcCccccC--CCceec--CCcCcccHHHHHHHHH--cCCCCCCCCCCcccc
Q 014913 11 LCPISLAIM--KDPVTV--PTGITYDRESIEKWLF--AGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~--~~Pv~l--~cght~c~~ci~~~~~--~~~~~~CP~~~~~l~ 56 (416)
.|++|...+ .|+... +-||+|-| |-..++- ..+...|+.|+..+-
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w~R-C~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVWPR-CALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp -------------SSEEE-TTS-EEEB--SSS-SBS-SS-EEE-TTT--EEE
T ss_pred cccccccccccCCcCEeECCCCCEEee-eeeeeeeeccCCeeEcCCCCCEEe
Confidence 699999754 676655 45899976 6555432 222478999987765
No 427
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=46.37 E-value=80 Score=22.48 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=28.2
Q ss_pred cChHHHHHHHHhc-CCcHHHHHHHHHHHHH-HHHhcc
Q 014913 367 IGVVAKLCLVLQV-DNSMKTKDKAREVLKL-HARAWK 401 (416)
Q Consensus 367 ~G~v~~L~~ll~~-~~~~~~k~~A~~ll~~-l~~~~~ 401 (416)
.|.+..|+.++.+ +.+..+|.-|+.+|++ +.++|.
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~ 49 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWS 49 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCc
Confidence 3899999999944 3478999999999988 566676
No 428
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=45.94 E-value=1.4e+02 Score=30.48 Aligned_cols=119 Identities=19% Similarity=0.213 Sum_probs=70.2
Q ss_pred hhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC--chhhH---hhhhhHHHHHHHHhccCCChHHHHHH
Q 014913 185 GLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE--PMQLI---SLRQELFVEVIQVLHDHISQQASKSA 259 (416)
Q Consensus 185 ~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~---~~~~g~i~~Lv~lL~~~~~~~~~~~A 259 (416)
..-.++..++ +.++.+++.+..+ . ....|..+...+. ....+ ..+.+.|+.|+.+|+...+.+.+.+|
T Consensus 11 e~l~Fik~~~-~~v~~llkHI~~~--~----ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~na 83 (475)
T PF04499_consen 11 EMLEFIKSQP-NFVDNLLKHIDTP--A----IMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNA 83 (475)
T ss_pred HHHHHHHhCc-cHHHHHHHhcCCc--H----HHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHH
Confidence 3345555556 3777777777543 2 2234444433222 22222 34578999999999855577888899
Q ss_pred HHHHHHh---CCCCc-----------chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 260 LEVLVNI---CPWGR-----------NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 260 ~~aL~nL---s~~~~-----------n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
+..|..+ +.+.. --..++....|..|+..+-... .......+++++-.|-+
T Consensus 84 a~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~-~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 84 ADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQ-GGSSLVNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHH
Confidence 8777665 43211 2245666677777777776421 34556666666666653
No 429
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=45.74 E-value=1e+02 Score=31.42 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=37.9
Q ss_pred HHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 359 SVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 359 ~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
.+.+.+.+.+.|+.|+.+|..+.+...+.+|+.+|+.+-+..+++
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~ 97 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNA 97 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 477777889999999999987778889999999999988865543
No 430
>PLN03205 ATR interacting protein; Provisional
Probab=45.58 E-value=1.1e+02 Score=30.17 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 338 QVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 338 ~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
..++-.|+.++..+........-|+.+...-+++.+-.+|+.++...+|+.|.-+|.+|-.
T Consensus 386 E~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 386 EDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred hheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 3567778877777666554434566677778899999999888777888888887766543
No 431
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.57 E-value=3.2e+02 Score=29.76 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=28.5
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP 229 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~ 229 (416)
.+|.++..|+.++.-+...||.++..+-...++
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 789999999999999999999999987655454
No 432
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=45.07 E-value=15 Score=25.37 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=6.5
Q ss_pred CCCCCCCCc
Q 014913 45 NNTCPMTKQ 53 (416)
Q Consensus 45 ~~~CP~~~~ 53 (416)
..+||.|+-
T Consensus 48 ~Y~CP~CGF 56 (59)
T PRK14890 48 PYTCPKCGF 56 (59)
T ss_pred ceECCCCCC
Confidence 677888863
No 433
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=44.76 E-value=7 Score=31.87 Aligned_cols=12 Identities=17% Similarity=0.132 Sum_probs=7.7
Q ss_pred ccCcCccccCCC
Q 014913 10 FLCPISLAIMKD 21 (416)
Q Consensus 10 ~~Cpic~~~~~~ 21 (416)
..||.|+-+++.
T Consensus 29 ~hCp~Cg~PLF~ 40 (131)
T COG1645 29 KHCPKCGTPLFR 40 (131)
T ss_pred hhCcccCCccee
Confidence 368887765544
No 434
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=44.74 E-value=1.1e+02 Score=26.72 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=54.0
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
.++.++++..+.+..++..|...|..+..-.= +.=.-++|.|+.|..++ ++..+..|...+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGL-----vnP~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGL-----VNPKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCC-----CChHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHh
Confidence 67778888888999999999999988764311 11114899999999998 9999999999999986533
No 435
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=44.52 E-value=17 Score=24.58 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=8.2
Q ss_pred CCCCCCCCccc
Q 014913 45 NNTCPMTKQVL 55 (416)
Q Consensus 45 ~~~CP~~~~~l 55 (416)
...||.|+++.
T Consensus 28 PlyCpKCK~Et 38 (55)
T PF14205_consen 28 PLYCPKCKQET 38 (55)
T ss_pred cccCCCCCceE
Confidence 56799997654
No 436
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.72 E-value=4.5e+02 Score=28.41 Aligned_cols=56 Identities=16% Similarity=0.060 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE 228 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 228 (416)
..+..+|+.++.++..-. .+.+. + ++..|=-+++++...+|-.|.++|..++....
T Consensus 259 emV~~EaArai~~l~~~~---~r~l~--p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 259 EMVIYEAARAIVSLPNTN---SRELA--P--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHHHHhhccccC---Hhhcc--h--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence 456677777777665332 23333 3 66677777777777788888888887775543
No 437
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.32 E-value=58 Score=25.96 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhh
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEA 279 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~ 279 (416)
+|+.||.-|.+. +.++...|...|...|..+..-..++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 789999999988 8999999999999999888665555553
No 438
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=42.69 E-value=88 Score=30.11 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=46.0
Q ss_pred chHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC---CHHHHHHHHHHHHHhhcccC
Q 014913 167 RPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG---TYESRAYAVLLLKSMLEVAE 228 (416)
Q Consensus 167 ~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~ 228 (416)
.++-.|+..|..+........+++..++ +.+..|+++++.+ ...+|..|..+|..++....
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp-~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDP-ELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcCh-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 3456677777666666666667777566 4999999999864 57889999999999987543
No 439
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=42.68 E-value=16 Score=22.76 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=9.0
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
...||.|+..+.
T Consensus 26 ~~~CP~Cg~~~~ 37 (41)
T smart00834 26 LATCPECGGDVR 37 (41)
T ss_pred CCCCCCCCCcce
Confidence 567999988554
No 440
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=69 Score=33.01 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=40.3
Q ss_pred hCcHHHHHHH-hhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh-cChhhhHHHHHHHHHHhcCCC
Q 014913 279 AGAVSILIDL-LLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR-VSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 279 ~G~v~~Lv~l-L~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~-~~~~~~~~a~~~L~~L~~~~~ 356 (416)
.|+|..|+.. ++++ +.+++..|+.+|.-+|..+ ...++..|++|.. .+.-++-..+.+|.--|.+.+
T Consensus 550 ~~vv~~lLh~avsD~--nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDG--NDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred chhHhhhheeecccC--chHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 4567777776 4455 7788888888888777643 3445555554432 233444444555555555555
Q ss_pred C
Q 014913 357 T 357 (416)
Q Consensus 357 ~ 357 (416)
+
T Consensus 619 ~ 619 (926)
T COG5116 619 D 619 (926)
T ss_pred c
Confidence 4
No 441
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=42.44 E-value=1.6e+02 Score=23.33 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHH
Q 014913 298 ASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVL 377 (416)
Q Consensus 298 ~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll 377 (416)
++..++..=..+..+.+-|.+... --..++. |.-.-...+..|..|+... +.-..+++.|+++.|+.+|
T Consensus 28 lkklvl~fek~i~kN~e~R~K~~d---dP~KFmd-----SE~dLd~~Ik~l~~La~~P---~LYp~lv~l~~v~sL~~LL 96 (108)
T PF08216_consen 28 LKKLVLSFEKRINKNQEMRIKYPD---DPEKFMD-----SEVDLDEEIKKLSVLATAP---ELYPELVELGAVPSLLGLL 96 (108)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCC---CHHHHHH-----hHHHHHHHHHHHHHccCCh---hHHHHHHHcCCHHHHHHHH
Confidence 444444444455555555554433 2344443 4445566677777787754 4899999999999999999
Q ss_pred hcCCc
Q 014913 378 QVDNS 382 (416)
Q Consensus 378 ~~~~~ 382 (416)
..+++
T Consensus 97 ~HeN~ 101 (108)
T PF08216_consen 97 SHENT 101 (108)
T ss_pred CCCCc
Confidence 76644
No 442
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.26 E-value=3.9e+02 Score=27.77 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=76.7
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcc-cCchhhHhhhhhHHHHHHHHhccC---CChHHHHHHHHHHHHh----C
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEV-AEPMQLISLRQELFVEVIQVLHDH---ISQQASKSALEVLVNI----C 267 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~nL----s 267 (416)
.++..+.+.+.++..... .|+.++..+... .... ...+..+..+++++ ....++..|.-++.+| |
T Consensus 357 ~a~~~i~~~i~~~~~~~~-ea~~~~~~~~~~~~~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c 429 (574)
T smart00638 357 PALKFIKQWIKNKKITPL-EAAQLLAVLPHTARYPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYC 429 (574)
T ss_pred HHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhhhcCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHh
Confidence 378888888887653322 233333333222 1111 23556666777643 1345666666665555 4
Q ss_pred CCCcchHHHHhhCcHHHHHHHhhccc--chhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh---cChhhhH
Q 014913 268 PWGRNRIKGVEAGAVSILIDLLLDSS--LERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR---VSQVASE 342 (416)
Q Consensus 268 ~~~~n~~~i~~~G~v~~Lv~lL~~~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~---~~~~~~~ 342 (416)
...+.....+-...++.|.+.|.... .+.+-+..++.+|.|+... ..+..|...+.. .+...+.
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR~ 498 (574)
T smart00638 430 VNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIRL 498 (574)
T ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHHH
Confidence 44333212233347788888775421 1344455677777777442 233444444431 1346788
Q ss_pred HHHHHHHHHhcCCC
Q 014913 343 RAVRILLSISKFSA 356 (416)
Q Consensus 343 ~a~~~L~~L~~~~~ 356 (416)
.|+.+|..++....
T Consensus 499 ~Av~Alr~~a~~~p 512 (574)
T smart00638 499 AAILALRNLAKRDP 512 (574)
T ss_pred HHHHHHHHHHHhCc
Confidence 88889988876544
No 443
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=41.21 E-value=27 Score=39.04 Aligned_cols=41 Identities=24% Similarity=0.599 Sum_probs=28.7
Q ss_pred CCCCcccCcCcc--ccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCC
Q 014913 5 DVPTFFLCPISL--AIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSE 58 (416)
Q Consensus 5 ~~~~~~~Cpic~--~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~ 58 (416)
++|..+.||-|+ +++.|+ +-|.-|.. . ...||.|+.++.++
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~---svgsGfDL---------p-dK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG---SVGSGFDL---------P-DKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCC---CcCCCCCC---------C-CCCCCcCCCccccC
Confidence 378999999998 566666 23444432 2 67899999999743
No 444
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=40.70 E-value=9 Score=20.29 Aligned_cols=11 Identities=27% Similarity=0.600 Sum_probs=4.3
Q ss_pred cCcCccccCCC
Q 014913 11 LCPISLAIMKD 21 (416)
Q Consensus 11 ~Cpic~~~~~~ 21 (416)
.|++|...|.+
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 45555544443
No 445
>PRK00420 hypothetical protein; Validated
Probab=40.21 E-value=10 Score=30.10 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=8.9
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
...||.|++.+.
T Consensus 40 ~~~Cp~Cg~~~~ 51 (112)
T PRK00420 40 EVVCPVHGKVYI 51 (112)
T ss_pred ceECCCCCCeee
Confidence 567899987664
No 446
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.13 E-value=5.2e+02 Score=28.03 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=71.3
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHH
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKG 276 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 276 (416)
.|..|..+-...=.+++.++..+++.|-....... ...+..||.-|.++ ....-..|...|.+|....+|-+.+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDp-qnKiaskAsylL~~L~~~HPnMK~V 378 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDP-QNKIASKASYLLEGLLAKHPNMKIV 378 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCc-chhhhhhHHHHHHHHHhhCCcceee
Confidence 66666666666668899999999999876533322 25677888888877 6677777888888886555544333
Q ss_pred HhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 277 VEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 277 ~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
+|..+..++-.+..+....-+|+..|..+...
T Consensus 379 ----vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 379 ----VIDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred ----hHHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 23344555555433556677788888777543
No 447
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.00 E-value=1.5e+02 Score=32.39 Aligned_cols=171 Identities=11% Similarity=-0.047 Sum_probs=0.0
Q ss_pred hHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhc------cccCCccHHHHHH
Q 014913 131 RCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVM------GRNGTFVDSLTQI 204 (416)
Q Consensus 131 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~------~~~G~~i~~Lv~l 204 (416)
+-+.+.|++..++.+..-....+.-..+ .+....|+.+|.-+..-++..++++. +.. .+|..++..
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR-------~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~ay-dGiaIiL~~ 666 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPR-------HDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAY-DGIAIILDA 666 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcc-------hHHHHHHHhheeeeEecchHHHHHHHHHhhccccc-CceEEEeec
Q ss_pred Hhc----CCHHHHHHHHHHHHHhhccc-CchhhHhhhhhH--HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHH
Q 014913 205 MQR----GTYESRAYAVLLLKSMLEVA-EPMQLISLRQEL--FVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGV 277 (416)
Q Consensus 205 L~~----~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~--i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~ 277 (416)
-.. .+++++..|..+|-|+.... ++...+....|- =.+=..+=... .....++.++-.|+ .+.
T Consensus 667 a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~-ks~~le~~l~~mw~---------~Vr 736 (1516)
T KOG1832|consen 667 ANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGT-KSAKLEQVLRQMWE---------AVR 736 (1516)
T ss_pred ccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCC-chHHHHHHHHHHHH---------HHh
Q ss_pred hhCcHHHHHHHhhcc---cchhhhHHHHHHHHHHHcCChhhHHHH
Q 014913 278 EAGAVSILIDLLLDS---SLERRASEMILTVLDLLCQCAEGRAEL 319 (416)
Q Consensus 278 ~~G~v~~Lv~lL~~~---~~~~~~~~~a~~~L~~La~~~~~~~~i 319 (416)
...+|..|+.||... +....++..|+.+|.-|+++++-|+-+
T Consensus 737 ~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIl 781 (1516)
T KOG1832|consen 737 GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQIL 781 (1516)
T ss_pred cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHH
No 448
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=39.87 E-value=4.6e+02 Score=28.36 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=77.5
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhH
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGR 316 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~ 316 (416)
..|..|..+-... -..++..++.+|++|-.+..-.. ...+-.||.-|... ...+...|.-.|..|.. ++.-+
T Consensus 304 rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDp--qnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 304 RFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDP--QNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCc--chhhhhhHHHHHHHHHhhCCcce
Confidence 5777777777776 78999999999999865443222 12455667777666 66777788888887754 66545
Q ss_pred HHHHhcCCchHHHHHHHHhc--ChhhhHHHHHHHHHHhcCCCChHHHHHHHh
Q 014913 317 AELLKHGAGLAIVSKKILRV--SQVASERAVRILLSISKFSATNSVLQEMLQ 366 (416)
Q Consensus 317 ~~i~~~~~~v~~Lv~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 366 (416)
..++. .+.+++.+. +..++-+|+..|..+.-...+..+...++.
T Consensus 377 ~Vvi~------EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 377 IVVID------EIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred eehHH------HHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 44433 244445554 558899999999886665554456666555
No 449
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.64 E-value=17 Score=22.12 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=7.7
Q ss_pred CCCCCCCCcc
Q 014913 45 NNTCPMTKQV 54 (416)
Q Consensus 45 ~~~CP~~~~~ 54 (416)
...||+|+..
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4689999864
No 450
>PRK11595 DNA utilization protein GntX; Provisional
Probab=38.13 E-value=23 Score=32.06 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=26.8
Q ss_pred cCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.+|.+.+..+ .+..|..|...+-.- ...||.|+.+..
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~--~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL--KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc--cCcCccCCCcCC
Confidence 699999876322 235899998776321 357999987654
No 451
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.96 E-value=22 Score=23.97 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=5.9
Q ss_pred CCCCCCCcccc
Q 014913 46 NTCPMTKQVLS 56 (416)
Q Consensus 46 ~~CP~~~~~l~ 56 (416)
..||+|+.+|.
T Consensus 21 ~~CPlC~r~l~ 31 (54)
T PF04423_consen 21 GCCPLCGRPLD 31 (54)
T ss_dssp EE-TTT--EE-
T ss_pred CcCCCCCCCCC
Confidence 38999998886
No 452
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=37.95 E-value=8.1 Score=24.72 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=15.4
Q ss_pred CCcCcccHHHHHHHHHcCCCCCCCCCCc
Q 014913 26 PTGITYDRESIEKWLFAGKNNTCPMTKQ 53 (416)
Q Consensus 26 ~cght~c~~ci~~~~~~~~~~~CP~~~~ 53 (416)
.|||.|+... . ..+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~-~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--S-ISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--E-cCCCCCCcCCCCCC
Confidence 6777776422 1 12223678999987
No 453
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.79 E-value=32 Score=26.94 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCCCCCCCcccCcCccccCC----Cceec-CCcCcccH
Q 014913 1 MEEIDVPTFFLCPISLAIMK----DPVTV-PTGITYDR 33 (416)
Q Consensus 1 ~~~~~~~~~~~Cpic~~~~~----~Pv~l-~cght~c~ 33 (416)
|...++-...+||-|+.-|. +|++. .||.+|=+
T Consensus 1 mAk~eLGtKridPetg~KFYDLNrdPiVsPytG~s~P~ 38 (129)
T COG4530 1 MAKPELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPR 38 (129)
T ss_pred CCcccccccccCccccchhhccCCCccccCcccccchH
Confidence 55666777788888886664 36555 36666633
No 454
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=6.6e+02 Score=28.58 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=128.3
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL 186 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~ 186 (416)
.+.+.+...+..+..+-..+++|....-+.-.+|.+|--+... ...+|...+.+|- .+...
T Consensus 479 enkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegf---------------PsslqvkiLkilE-yAVtv--- 539 (2799)
T KOG1788|consen 479 ENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGF---------------PSSLQVKILKILE-YAVTV--- 539 (2799)
T ss_pred cCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCC---------------ChHHHHHHHHHHH-HHHhh---
Confidence 4568888899999999998899999988999999999877765 1345555555443 11110
Q ss_pred hhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc-----C----------
Q 014913 187 KSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD-----H---------- 250 (416)
Q Consensus 187 ~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~---------- 250 (416)
...+-+ .-+-.|.-+|+.+ +...+.-....-..|...+...+....+.|++..|-..++. +
T Consensus 540 vncvPe---qELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvseh 616 (2799)
T KOG1788|consen 540 VNCVPE---QELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEH 616 (2799)
T ss_pred hccCcH---HHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHH
Confidence 011110 0111233344443 22222222223333334444444455666877777766643 0
Q ss_pred -----CChHHH--------------------------H------HHHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhcc
Q 014913 251 -----ISQQAS--------------------------K------SALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 251 -----~~~~~~--------------------------~------~A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
.++..+ + -.--+|..|-. +.+|.+.+.++.++..++..+-++
T Consensus 617 ydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflind 696 (2799)
T KOG1788|consen 617 YDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIND 696 (2799)
T ss_pred hhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeech
Confidence 000000 0 00112223322 334666666666666666555333
Q ss_pred cchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcC------------hhhhHHHHHHHHHHhcCCCChHH
Q 014913 293 SLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVS------------QVASERAVRILLSISKFSATNSV 360 (416)
Q Consensus 293 ~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~------------~~~~~~a~~~L~~L~~~~~~~~~ 360 (416)
+-+...+.++..|-..+..+ + . -.-+-++|..|+++- ......-.+++|.+..-++. .
T Consensus 697 ----ehRSslLrivscLitvdpkq--v-h-hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngs--a 766 (2799)
T KOG1788|consen 697 ----EHRSSLLRIVSCLITVDPKQ--V-H-HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGS--A 766 (2799)
T ss_pred ----HHHHHHHHHHHHHhccCccc--c-c-HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCch--h
Confidence 33344444555443321110 1 1 122445666666531 13344556788888876653 6
Q ss_pred HHHHHhcChHHHHHHHHh
Q 014913 361 LQEMLQIGVVAKLCLVLQ 378 (416)
Q Consensus 361 ~~~i~~~G~v~~L~~ll~ 378 (416)
+..+.++|++-.|+..|.
T Consensus 767 qrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 767 QRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred eeehhccccHHHHHHHHH
Confidence 778889999999988875
No 455
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.64 E-value=5.8e+02 Score=27.89 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.5
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC
Q 014913 238 ELFVEVIQVLHDHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
..+|.+++.|+.+ +.-+-.-|+.++-.+-...
T Consensus 498 ~~~p~li~~L~a~-s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 498 ALLPRLIRFLEAE-SRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHhccCc-chHHHHHHHHHHHhccccc
Confidence 4799999999998 8888899999998764433
No 456
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=37.59 E-value=25 Score=33.40 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=35.1
Q ss_pred ccCcCccccCCC----ceecCCcCc-----ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKD----PVTVPTGIT-----YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~----Pv~l~cght-----~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..|-||...... |...+|... .=+.|++.|+...+...|..|...+.
T Consensus 79 ~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 79 PICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 789999875533 566666432 34789999998766889999988765
No 457
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=37.07 E-value=25 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=24.8
Q ss_pred CcccCcCccccCCCc-eecCCcCcccHHHHHHH
Q 014913 8 TFFLCPISLAIMKDP-VTVPTGITYDRESIEKW 39 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P-v~l~cght~c~~ci~~~ 39 (416)
+=|.|..|...+.+. ....-|.-||+.|..+.
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~~ 57 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQKR 57 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHhhh
Confidence 448899999888887 45677888999887653
No 458
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=36.44 E-value=3.4e+02 Score=26.62 Aligned_cols=137 Identities=18% Similarity=0.124 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKS 188 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 188 (416)
...|..|..-|+.+++..+..-..+. .+.|..++.-..+. +..+...++.|+.++..++......+.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~------------~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASN------------PSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------------TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhC------------CcccHHHHHHHHHHHHHHHhhhccccC
Confidence 36677788888888865322111111 12233333222222 112467788888888877765432111
Q ss_pred hhccccC--CccHHHH----HHHh---cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHH
Q 014913 189 LVMGRNG--TFVDSLT----QIMQ---RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSA 259 (416)
Q Consensus 189 ~i~~~~G--~~i~~Lv----~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A 259 (416)
=+.+... +..+.+. .-|+ +..+-++..|++.+...-..- .+.. -.+.+|.|+..|.++ +.-+..-|
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l-~~~~---l~~~~~~l~~~L~~~-~~vv~tyA 366 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL-PKEQ---LLQIFPLLVNHLQSS-SYVVHTYA 366 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HHH---HHHHHHHHHHHTTSS--HHHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC-CHHH---HHHHHHHHHHHhCCC-Ccchhhhh
Confidence 1110000 0111111 1122 234556777777777765431 2222 236899999999998 88888888
Q ss_pred HHHH
Q 014913 260 LEVL 263 (416)
Q Consensus 260 ~~aL 263 (416)
+.+|
T Consensus 367 A~~i 370 (370)
T PF08506_consen 367 AIAI 370 (370)
T ss_dssp HHHH
T ss_pred hhhC
Confidence 8765
No 459
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=35.71 E-value=17 Score=35.08 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=35.0
Q ss_pred CCcccCcCccccCCCce----ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPV----TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv----~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++|.||+...+|.+=- +-.+|.+||+..|++.-....++..-++..+++
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFt 152 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFT 152 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcc
Confidence 46799999999998743 227899999999998633222444455555555
No 460
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=35.60 E-value=13 Score=31.09 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=17.6
Q ss_pred CCcCcccHHHHHHHHHcC---------CCCCCCCCCcccc
Q 014913 26 PTGITYDRESIEKWLFAG---------KNNTCPMTKQVLS 56 (416)
Q Consensus 26 ~cght~c~~ci~~~~~~~---------~~~~CP~~~~~l~ 56 (416)
.+||+|+ -||... |-.+||+|+..--
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V 43 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEV 43 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeE
Confidence 4689986 466542 4678999976543
No 461
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=35.15 E-value=1.6e+02 Score=29.32 Aligned_cols=138 Identities=17% Similarity=0.106 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcChhhhhHHhhc----CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhh
Q 014913 114 KCLKKLRSIAAENETNKRCLESA----GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSL 189 (416)
Q Consensus 114 ~Al~~L~~l~~~~~~~~~~i~~~----G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 189 (416)
+|.--|+.+...+...|..+..- ..|-++++.|-... ..+..-..-|+-+|.-|+.++.-+ +.
T Consensus 372 qatLLLY~LLh~Ns~fr~yvl~r~dlEnLVvPiL~iLy~a~------------~~NSHHvYmaLIvlLILsEDdgFn-k~ 438 (695)
T KOG2225|consen 372 QATLLLYMLLHANSGFRNYVLSRIDLENLVVPILRILYDAT------------SNNSHHVYMALIVLLILSEDDGFN-KI 438 (695)
T ss_pred hhHHHHHHHHhccccHHHHHHhhccHHHhHHHHHHHHhcCC------------cCCccchHHHHHHHHHhcccchhh-HH
Confidence 34556777777777777776542 45555556664431 113444555666666666544332 33
Q ss_pred hccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH-------HHhccCCChHHHHHHHHH
Q 014913 190 VMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI-------QVLHDHISQQASKSALEV 262 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv-------~lL~~~~~~~~~~~A~~a 262 (416)
|.+ ..|.++.--.+.....+ .-|++-.|| .+++.. +.-...+++.|
T Consensus 439 iHe-------------------------~mlKnitWyser~v~EI-SLGglliLvviRtIQyNmlktR-DkYLHTNCLAA 491 (695)
T KOG2225|consen 439 IHE-------------------------TMLKNITWYSERSVREI-SLGGLLILVVIRTIQYNMLKTR-DKYLHTNCLAA 491 (695)
T ss_pred HHH-------------------------HHHhhccceecceeeee-eccceeeeeeHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 331 12223322211111111 124333322 356666 77888999999
Q ss_pred HHHhCCCCcchHHHHhhCcHHHHHHHhhcc
Q 014913 263 LVNICPWGRNRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 263 L~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
|.|++..-.+-...+.... -.|..+|...
T Consensus 492 LANMSa~Fr~LhpyvaQRl-iSLf~lLtkk 520 (695)
T KOG2225|consen 492 LANMSAFFRNLHPYVAQRL-ISLFDLLTKK 520 (695)
T ss_pred HHhhHHHHHhhhHHHHHHH-HHHHHHHHHH
Confidence 9999987776555554433 3455555544
No 462
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.10 E-value=19 Score=32.80 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=34.6
Q ss_pred CCCcccCcCccccCCCceec----CC---c--CcccHHHHHHHHHcCC------CCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKDPVTV----PT---G--ITYDRESIEKWLFAGK------NNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l----~c---g--ht~c~~ci~~~~~~~~------~~~CP~~~~~l~ 56 (416)
...|..|=||..-=+|--.. || | |=.=+.|+.+|++++. ...||.|+.++.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 44567899998766664322 44 2 2245689999998741 357999987775
No 463
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=34.89 E-value=13 Score=35.32 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=29.9
Q ss_pred CcccCcCccccCCCcee-c--CCc--CcccHHHHHHHHHcCCCCCCCCCCc
Q 014913 8 TFFLCPISLAIMKDPVT-V--PTG--ITYDRESIEKWLFAGKNNTCPMTKQ 53 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~-l--~cg--ht~c~~ci~~~~~~~~~~~CP~~~~ 53 (416)
..-.||+|+..-.--|+ . .-| +-+|..|=..|--. ...||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~--R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV--RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc--CccCCCCCC
Confidence 35689999976443333 2 345 44788888888543 568999986
No 464
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=34.87 E-value=4.7e+02 Score=26.07 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=84.8
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc---cC------CChHHHHHHHHHHHHhCCC
Q 014913 200 SLTQIMQRGT-YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH---DH------ISQQASKSALEVLVNICPW 269 (416)
Q Consensus 200 ~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~~------~~~~~~~~A~~aL~nLs~~ 269 (416)
.+.+.|..|. .-.+......+.-|+.+...-.....+ .-+..|..+.+ +. .+..+...|+.+|+|+..+
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~-q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTND-QLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccch-HHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 4556666664 344566777788888765554444433 23444444432 11 1347788999999999877
Q ss_pred Cc-chHHHHhhCcHHHHHHHhhccc---chhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHh
Q 014913 270 GR-NRIKGVEAGAVSILIDLLLDSS---LERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILR 335 (416)
Q Consensus 270 ~~-n~~~i~~~G~v~~Lv~lL~~~~---~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~ 335 (416)
.+ .+....+.-.+..+.+.+...- -...++-.-+..|.-|.. ..+.|.+++...+|++.+.+.+..
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 65 6677777766666666664320 012344455556665543 567788888879999999997764
No 465
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=34.84 E-value=5e+02 Score=26.32 Aligned_cols=171 Identities=17% Similarity=0.142 Sum_probs=96.3
Q ss_pred cchHHHHHHHHHhcCCCh--hhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHH
Q 014913 166 SRPVDEALSILCNLKISE--LGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVE 242 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~--~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 242 (416)
.+-++.|+.-|..+.... ..+.+... ..+-.+++.|+. .+.-.+.-|..+|..++.... .+..-...-+|.-
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~----~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~l~DstE~ai~K 375 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFA----EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-ARLFDSTEIAICK 375 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHH----HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-HhhhchHHHHHHH
Confidence 455666776444433322 22333443 366778888887 577788999999999987632 2222111235555
Q ss_pred HHHHhccCCChHHHHHHHHH-HHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC--hhhHHHH
Q 014913 243 VIQVLHDHISQQASKSALEV-LVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC--AEGRAEL 319 (416)
Q Consensus 243 Lv~lL~~~~~~~~~~~A~~a-L~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~--~~~~~~i 319 (416)
+++.-.+. ..++...|..+ +.-|+.+..-+.. ..+..++... |...--.++..+..|... .+.-..+
T Consensus 376 ~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~l 445 (516)
T KOG2956|consen 376 VLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNL 445 (516)
T ss_pred HHHHHhCC-chhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 56655555 55555555544 5556665553322 1222233333 444333444445555442 2233334
Q ss_pred HhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 320 LKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 320 ~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
+. ...|.+++.-.+.+..++..|+-+|..+..
T Consensus 446 l~--diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 446 LP--DIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hh--hhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 43 678888887777777888888888877654
No 466
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=34.82 E-value=2e+02 Score=23.32 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcC-hhhhhHHhhc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 96 AQITKLLNEAA-KSPQMQIKCLKKLRSIAAEN-ETNKRCLESA-GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
+-+..|.++|. +++.++.++|..|..++... +..+.++.+. -.|..+.+.=...+ + ..| |.....++..|
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D--p---~~G--d~~~~~VR~~A 110 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD--P---LKG--DSLNEKVREEA 110 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC--c---ccC--cchhHHHHHHH
Confidence 44566777776 46899999999999999864 4567776653 45555444422111 0 011 22245677766
Q ss_pred HHHHHhc
Q 014913 173 LSILCNL 179 (416)
Q Consensus 173 ~~~L~~l 179 (416)
-.++..+
T Consensus 111 ~El~~~i 117 (122)
T cd03572 111 QELIKAI 117 (122)
T ss_pred HHHHHHH
Confidence 6666544
No 467
>PRK01343 zinc-binding protein; Provisional
Probab=34.78 E-value=29 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=18.6
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~ 42 (416)
...||+|+..+..+..--|...+-.-=+.+|+.+
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e 42 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSG 42 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCC
Confidence 4689999987765433223332222235566654
No 468
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=34.11 E-value=3.8e+02 Score=31.55 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=64.1
Q ss_pred ccHHHHHH----HhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcc
Q 014913 197 FVDSLTQI----MQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRN 272 (416)
Q Consensus 197 ~i~~Lv~l----L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n 272 (416)
.++.++.+ |.+.++.+++-+......+=...+ . .. ...+|..||..+-++ +......|+.+|..|+.. +
T Consensus 432 ~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd--s-~~-qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~--~ 504 (1426)
T PF14631_consen 432 YFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD--S-YC-QQEVVGALVTHIGSG-NSQEVDAALDVLCELAEK--N 504 (1426)
T ss_dssp SHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---H-HH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc--c-hh-HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhc--c
Confidence 44455444 346778887777666555432222 1 11 235888999998888 666678999999999863 3
Q ss_pred hHHHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh
Q 014913 273 RIKGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 273 ~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~ 313 (416)
...+.. +-.|..+++.+..- +..-......+|..|+...
T Consensus 505 ~~~l~~fa~~l~giLD~l~~L--s~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNL--SLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCC
Confidence 334433 33444455555544 4455667788888887643
No 469
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=33.55 E-value=21 Score=20.04 Aligned_cols=13 Identities=15% Similarity=0.352 Sum_probs=9.5
Q ss_pred ccCcCccccCCCc
Q 014913 10 FLCPISLAIMKDP 22 (416)
Q Consensus 10 ~~Cpic~~~~~~P 22 (416)
|.|++|...|.+.
T Consensus 2 ~~C~~C~k~f~~~ 14 (27)
T PF12171_consen 2 FYCDACDKYFSSE 14 (27)
T ss_dssp CBBTTTTBBBSSH
T ss_pred CCcccCCCCcCCH
Confidence 6777887777765
No 470
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=33.37 E-value=66 Score=31.98 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=31.9
Q ss_pred CCCCCCCCccc-CcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhH
Q 014913 1 MEEIDVPTFFL-CPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTL 67 (416)
Q Consensus 1 ~~~~~~~~~~~-Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l 67 (416)
|++..++.+.. ||-|..+.+.| -++.|+ .-.||.|+..+..+.....+..+
T Consensus 4 ~~~~~~~~~~~~C~~Cd~l~~~~-~l~~g~---------------~a~CpRCg~~L~~~~~~~~~~~l 55 (403)
T TIGR00155 4 MCEHHPAAKHILCSQCDMLVALP-RIESGQ---------------KAACPRCGTTLTVGWDWSLQRPA 55 (403)
T ss_pred ccccCCCCCeeeCCCCCCccccc-CCCCCC---------------eeECCCCCCCCcCCCCCCHHHHH
Confidence 44444555554 99999988887 344444 34699999998633444444443
No 471
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=33.16 E-value=23 Score=27.89 Aligned_cols=20 Identities=40% Similarity=0.585 Sum_probs=14.7
Q ss_pred Cceec---CCcCcccHHHHHHHHH
Q 014913 21 DPVTV---PTGITYDRESIEKWLF 41 (416)
Q Consensus 21 ~Pv~l---~cght~c~~ci~~~~~ 41 (416)
.||-+ .|+ |+||.||++|-.
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhC
Confidence 47755 343 599999999974
No 472
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=33.06 E-value=49 Score=28.63 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=20.9
Q ss_pred CCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 45 NNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
.|+||.|+..+...+.......+.+.++.....
T Consensus 132 ~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 132 GFTCPKCGEDLEEYDSSEEIEELESELDELEEE 164 (176)
T ss_pred CCCCCCCCchhhhccchHHHHHHHHHHHHHHHH
Confidence 589999999997333333334455555555443
No 473
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=32.99 E-value=2.9e+02 Score=26.80 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=64.5
Q ss_pred ccHHHHHHHhcC-------CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc---------CCChHHHHHHH
Q 014913 197 FVDSLTQIMQRG-------TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD---------HISQQASKSAL 260 (416)
Q Consensus 197 ~i~~Lv~lL~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---------~~~~~~~~~A~ 260 (416)
.+|.++.++..+ +.........++..|..+..-.-..-.. -.+|+++.++-. ......|+.|+
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 455555555432 4556666777777777664433322333 488888877621 11458899999
Q ss_pred HHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 261 EVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 261 ~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
..|..++..-.+...-...-++..|.+.+.+........--|+..|..|
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 9999998654433333444455567766665532223344555555544
No 474
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=32.95 E-value=2.6e+02 Score=30.58 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcC--hh-hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 014913 89 PKPPINKAQITKLLNEAAKSPQMQIKCLKKLRSIAAEN--ET-NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHES 165 (416)
Q Consensus 89 ~~~~~~~~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~--~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~ 165 (416)
|.-|+++++...++..|+..|....+- |.+|..+. +. --..-++++.+..+++==... .
T Consensus 18 ~p~pl~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~pgvd~aa~vka~fl~~i~~~~~~~---------------~ 79 (844)
T TIGR00117 18 PPLPLNANQMAALVELLKNPPAGEEEF---LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKC---------------P 79 (844)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCccHHH---HHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCC---------------c
Confidence 444578899999999995444322221 22222211 10 112233444444443211111 1
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSML 224 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 224 (416)
.-....|...|..+ +. |--|+.|+++|.+.+.++...|+.+|.+-.
T Consensus 80 ~i~~~~a~~~l~~m----------~g---g~~~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 80 LISPEKAIELLGTM----------QG---GYNVHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred ccCHHHHHHHHhhc----------cC---CCCHHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 22355566666533 22 236889999999889999999999998754
No 475
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=32.63 E-value=24 Score=21.79 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=15.2
Q ss_pred ccCcCccccCCCceecCCcCcccHHH
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRES 35 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~c 35 (416)
+.|++|...+ ....=|..||..|
T Consensus 9 ~~C~~C~~~~---~~~~dG~~yC~~c 31 (36)
T PF11781_consen 9 EPCPVCGSRW---FYSDDGFYYCDRC 31 (36)
T ss_pred CcCCCCCCeE---eEccCCEEEhhhC
Confidence 4589888863 2446677777655
No 476
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=32.62 E-value=5.1 Score=29.72 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=28.3
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|-||.....+| |..||+.|-.+ ...|-.|++.+.
T Consensus 55 ~kC~iCk~~vHQ~-----GshYC~tCAY~------KgiCAMCGKki~ 90 (100)
T KOG3476|consen 55 AKCRICKQLVHQP-----GSHYCQTCAYK------KGICAMCGKKIL 90 (100)
T ss_pred chhHHHHHHhcCC-----cchhHhHhhhh------hhHHHHhhhHhh
Confidence 4799999988888 76799999654 457888887765
No 477
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.41 E-value=1.2e+02 Score=30.75 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=54.8
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcC-CcHHHHHHHHHHHHHHHH
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVD-NSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~~~k~~A~~ll~~l~~ 398 (416)
++..|-+.|...+..++..|+.+|-.+..+.+. .+..++.+.+++.-++...... .+...|+++-.+|..=..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~-~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~ 112 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGY-SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQ 112 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHH
Confidence 344555555555678999999988888887764 6888999999999999888765 567788888777764333
No 478
>PF12773 DZR: Double zinc ribbon
Probab=32.20 E-value=43 Score=21.97 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=8.2
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
...||.|+..+.
T Consensus 29 ~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 29 KKICPNCGAENP 40 (50)
T ss_pred CCCCcCCcCCCc
Confidence 456888877654
No 479
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.07 E-value=39 Score=29.36 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=19.5
Q ss_pred CCCCCCCCccccCCCCCCCchhHHHHHHHHHH
Q 014913 45 NNTCPMTKQVLSSECELTPNHTLRRLIQSWCT 76 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~ 76 (416)
.|.||.|+.++...+.-..-..+++.|.....
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 79999999999722222222345565555544
No 480
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=31.99 E-value=4.8 Score=39.20 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++-.+|.|.+|++.|.||..|.- | -|- ||-. -.+.||.|.+++.
T Consensus 263 n~iGdyiCqLCK~kYeD~F~LAQ-H-rC~-RIV~-----vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 263 NVIGDYICQLCKEKYEDAFALAQ-H-RCP-RIVH-----VEYRCPECDKVFS 306 (500)
T ss_pred ccHHHHHHHHHHHhhhhHHHHhh-c-cCC-eeEE-----eeecCCccccccc
Confidence 45578999999999999987732 2 221 2211 1468999988886
No 481
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=31.78 E-value=79 Score=24.96 Aligned_cols=51 Identities=27% Similarity=0.647 Sum_probs=28.8
Q ss_pred CCCC-CcccCcCccccCCCceecC--Cc----CcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 4 IDVP-TFFLCPISLAIMKDPVTVP--TG----ITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 4 ~~~~-~~~~Cpic~~~~~~Pv~l~--cg----ht~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+..| +.+.|||++++...=|-.+ -+ +-|....+.+...++ ..=|.++++++
T Consensus 34 f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~--~~HPLSREpit 91 (113)
T PF06416_consen 34 FQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG--APHPLSREPIT 91 (113)
T ss_dssp CTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT-----TTT-----
T ss_pred ccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC--CCCCCccCCCC
Confidence 3444 4489999999999988652 22 338999999998874 33488888776
No 482
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=31.70 E-value=21 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=19.1
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.||.|..-+.-|--.. |. ...||.|+..+.
T Consensus 2 ~~~CP~CG~~iev~~~~~-Ge---------------iV~Cp~CGaele 33 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GE---------------LVICDECGAELE 33 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CC---------------EEeCCCCCCEEE
Confidence 368999987543321111 11 346999988775
No 483
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=31.57 E-value=1.6e+02 Score=28.30 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhcccCchhhHh-hhhhHHHHHHHHhccC--CChHHHHHHHHHHHHhCCCCcchHHH-------HhhCc
Q 014913 212 SRAYAVLLLKSMLEVAEPMQLIS-LRQELFVEVIQVLHDH--ISQQASKSALEVLVNICPWGRNRIKG-------VEAGA 281 (416)
Q Consensus 212 ~~~~a~~~L~~l~~~~~~~~~~~-~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~nLs~~~~n~~~i-------~~~G~ 281 (416)
+|-.|...|.++.........+. .+.+.+.-|+++++.+ .....+..|+.+|..++....-...+ +.+|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 34445555555544433333333 3445999999999854 35688999999999998855422222 34677
Q ss_pred HHHHHHHh
Q 014913 282 VSILIDLL 289 (416)
Q Consensus 282 v~~Lv~lL 289 (416)
++.+++-.
T Consensus 318 L~~llR~~ 325 (329)
T PF06012_consen 318 LPQLLRKC 325 (329)
T ss_pred HHHHHHHH
Confidence 77766543
No 484
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=31.19 E-value=35 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=14.6
Q ss_pred CCCCCCCCccccCCCCCCCchhHHHHHHHHH
Q 014913 45 NNTCPMTKQVLSSECELTPNHTLRRLIQSWC 75 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~ 75 (416)
..+||.|+..+. ....+++..+.+-
T Consensus 24 PatCP~C~a~~~------~srnLrRHle~~H 48 (54)
T PF09237_consen 24 PATCPICGAVIR------QSRNLRRHLEIRH 48 (54)
T ss_dssp -EE-TTT--EES------SHHHHHHHHHHHT
T ss_pred CCCCCcchhhcc------chhhHHHHHHHHh
Confidence 578999988776 5666766665543
No 485
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=31.08 E-value=13 Score=20.27 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.8
Q ss_pred ccCcCccccCCCce
Q 014913 10 FLCPISLAIMKDPV 23 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv 23 (416)
|.|.+|...|.++.
T Consensus 1 ~~C~~C~~~f~s~~ 14 (25)
T PF12874_consen 1 FYCDICNKSFSSEN 14 (25)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCCcCCHH
Confidence 45777776666553
No 486
>COG1773 Rubredoxin [Energy production and conversion]
Probab=30.97 E-value=25 Score=24.04 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.7
Q ss_pred CCCCcccCcCcc
Q 014913 5 DVPTFFLCPISL 16 (416)
Q Consensus 5 ~~~~~~~Cpic~ 16 (416)
++|+++.||.|+
T Consensus 32 dlPd~w~CP~Cg 43 (55)
T COG1773 32 DLPDDWVCPECG 43 (55)
T ss_pred hCCCccCCCCCC
Confidence 478888888887
No 487
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=30.85 E-value=4.4e+02 Score=24.46 Aligned_cols=165 Identities=12% Similarity=0.126 Sum_probs=91.7
Q ss_pred ccHHHHHHHhcC--CHHHHHHHHHHHHHhhcccCc-------hhhHhhhhhHHHHHHHHhccCCC----hHHHHHHHHHH
Q 014913 197 FVDSLTQIMQRG--TYESRAYAVLLLKSMLEVAEP-------MQLISLRQELFVEVIQVLHDHIS----QQASKSALEVL 263 (416)
Q Consensus 197 ~i~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL 263 (416)
..+.+..++-.| +....+.+...|..|+...+. .+....--+.+|.++.-+.++ + .......+..|
T Consensus 61 ~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~-~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 61 NFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDP-NPIQPDQECIEIAEAL 139 (262)
T ss_pred CchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhccc-ccccccHHHHHHHHHH
Confidence 444444444444 445567777888888754322 122222224566666666666 4 24455667888
Q ss_pred HHhCCCCcchHHHHhhCcHHHHHHHhhccc--chhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhh
Q 014913 264 VNICPWGRNRIKGVEAGAVSILIDLLLDSS--LERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVAS 341 (416)
Q Consensus 264 ~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~--~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~ 341 (416)
..+|.... .+.+..++.....+. ...+....++..|+.--. ++.- ...+..|+++|.++....+
T Consensus 140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~~------~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDHE------FQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chhH------HHHHHHHHHHHhCCcHHHH
Confidence 88773221 122333333333331 123333344444433211 2111 2344567887777778999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcC
Q 014913 342 ERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVD 380 (416)
Q Consensus 342 ~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~ 380 (416)
.....+|..+-.+-+- +.- .....+.+|+++++++
T Consensus 206 ~~~L~iL~~ll~~~d~---~~~-~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDM---RSP-HGADLISPLLRLLQTD 240 (262)
T ss_pred HHHHHHHHHHhccccC---CCC-cchHHHHHHHHHhCCc
Confidence 9999999998876642 222 5567899999999865
No 488
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=30.79 E-value=5.8e+02 Score=25.87 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=90.7
Q ss_pred ccHHHHHHHh---cC-CHHHHHHHHHHHHHhhc-ccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc
Q 014913 197 FVDSLTQIMQ---RG-TYESRAYAVLLLKSMLE-VAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR 271 (416)
Q Consensus 197 ~i~~Lv~lL~---~~-~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 271 (416)
..+.+.++|. .. ..+-++.|..-|..+.. ..-..+.... ...+..++..|.+..+..-++-|++.|..++.+..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 4444444444 22 34455666664555543 3233333222 24677788888873377889999999999988654
Q ss_pred chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHH-HHHHcCC-hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHH
Q 014913 272 NRIKGVEAGAVSILIDLLLDSSLERRASEMILTV-LDLLCQC-AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILL 349 (416)
Q Consensus 272 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~-L~~La~~-~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~ 349 (416)
.+-.=--+=+|..+++.-.+. .+++...|... +.-|+.. +..+ |..+..+|+..+...--.++.-+-
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds--~~~v~~~Aeed~~~~las~~P~~~---------I~~i~~~Ilt~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDS--QDEVMRVAEEDCLTTLASHLPLQC---------IVNISPLILTADEPRAVAVIKMLT 431 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHhhCchhH---------HHHHhhHHhcCcchHHHHHHHHHH
Confidence 332111122444455544444 44444444433 3334332 2222 222333344333334444444555
Q ss_pred HHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 350 SISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 350 ~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
.|+..-..++....+ ....|.++.--++. +..+|+.|+..|-
T Consensus 432 kl~e~l~~EeL~~ll--~diaP~~iqay~S~-SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 432 KLFERLSAEELLNLL--PDIAPCVIQAYDST-SSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhcCHHHHHHhh--hhhhhHHHHHhcCc-hHHhhhhHHHhHH
Confidence 566544322222211 24555555555553 5566777766443
No 489
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=30.77 E-value=1.2e+02 Score=28.53 Aligned_cols=54 Identities=20% Similarity=0.249 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC--c-------------chHHHHhhCcHHHHHHHhhc
Q 014913 237 QELFVEVIQVLHDHISQQASKSALEVLVNICPWG--R-------------NRIKGVEAGAVSILIDLLLD 291 (416)
Q Consensus 237 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~--~-------------n~~~i~~~G~v~~Lv~lL~~ 291 (416)
...|..++.-|... +...+-.|+++|..++.+. + |...+.+.|++++|+.+|..
T Consensus 59 ~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 36778888888887 7888888899888887533 1 55667899999999999974
No 490
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=30.67 E-value=2.1e+02 Score=31.72 Aligned_cols=128 Identities=9% Similarity=0.101 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK 187 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 187 (416)
.+..+..+.-.|.+++-.++...+.. +|.||+-|... ++..++.+.+-+++.+|.+. .
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~-----~P~lvkeLe~~--------------~~~aiRnNiV~am~D~C~~Y---T 1001 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRL-----MPMLVKELEYN--------------TAHAIRNNIVLAMGDICSSY---T 1001 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhh--------------hHHHHhcceeeeehhhHHHH---H
Q ss_pred hhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 188 SLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
.++. ..||.+...|..+++-+|.++.-.|.+|-..+-.++.-..- ++.+..++... +..+..|-..|..+
T Consensus 1002 am~d----~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf---~Rf~l~l~D~~--edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1002 AMTD----RYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELF---IRFMLALLDAN--EDIRNDAKFYISEV 1071 (1529)
T ss_pred HHHH----HhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhH---HHHHHHHcccC--HHHHHHHHHHHHHH
No 491
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=30.06 E-value=68 Score=22.10 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=12.7
Q ss_pred CCCCCCCCccccCCCCCCC
Q 014913 45 NNTCPMTKQVLSSECELTP 63 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~ 63 (416)
+.+||+|++.++ .++..-
T Consensus 8 H~HC~VCg~aIp-~de~~C 25 (64)
T COG4068 8 HRHCVVCGKAIP-PDEQVC 25 (64)
T ss_pred CccccccCCcCC-CccchH
Confidence 568999998887 544433
No 492
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.99 E-value=3.7e+02 Score=23.39 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcCh-h----hhhHHh------hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhc
Q 014913 111 MQIKCLKKLRSIAAENE-T----NKRCLE------SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNL 179 (416)
Q Consensus 111 ~~~~Al~~L~~l~~~~~-~----~~~~i~------~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l 179 (416)
+|..|+.+|..+++..+ . +...+. ....-+.|+.++-.+ .+++++..|+.+|..|
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~D--------------p~~kvR~aA~~~l~~l 67 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKD--------------PSPKVRAAAASALAAL 67 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcC--------------CchhHHHHHHHHHHHH
Confidence 57889999999988732 1 111111 112333344333333 1689999999998877
Q ss_pred CCChhhhhhhhcc---ccC--------------CccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHH
Q 014913 180 KISELGLKSLVMG---RNG--------------TFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFV 241 (416)
Q Consensus 180 ~~~~~~~~~~i~~---~~G--------------~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 241 (416)
-.+....-....+ ..| ..-..|+..|+.. +..+......+|..|.....+.+.- .|.++
T Consensus 68 L~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~ 144 (182)
T PF13251_consen 68 LEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLT 144 (182)
T ss_pred HHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHH
Confidence 6543211011110 000 0123455555554 6777788888888888776655542 35555
Q ss_pred HHHH----HhccCCChHHHHHHHHHHHHhCCCC
Q 014913 242 EVIQ----VLHDHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 242 ~Lv~----lL~~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
.++. ++.+. |..++..++.++..|....
T Consensus 145 ~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 145 EVVTQVRPLLRHR-DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC
Confidence 5555 45566 8888888888888775433
No 493
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.72 E-value=1.5e+02 Score=23.66 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=33.5
Q ss_pred CcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh
Q 014913 280 GAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK 321 (416)
Q Consensus 280 G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~ 321 (416)
=+|+.|+.-|.+. +.++...|+.+|...+..++..+.++.
T Consensus 8 w~i~lLv~QL~D~--~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDP--SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 3688999999888 889999999999999998866666655
No 494
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=29.66 E-value=55 Score=25.73 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=35.4
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
..-..|+.||++++..+|-.|+..+..+... .+...|-.+-+++ ..+.--.|-.+|++|
T Consensus 47 d~r~aLl~LL~hpn~~VRl~AA~~~L~~~p~-----------eA~~~Le~ia~~~-~~~~a~~a~~~l~~l 105 (106)
T PF09450_consen 47 DQRDALLPLLKHPNMQVRLWAAAHTLRYAPE-----------EARKVLEEIASSK-WFPQAGDAGMCLRNL 105 (106)
T ss_dssp -GGGGGGGGGGSS-HHHHHHHHHTTTTT-HH-----------HHHHHHHHHHHHT--TTHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCCChhHHHHHHHHHHHhCHH-----------HHHHHHHHHHHcC-CCCCCCcHHHHHHhc
Confidence 4667888999999999999998877655322 2334444444444 334445566666654
No 495
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=29.51 E-value=14 Score=27.81 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=19.2
Q ss_pred cCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 18 IMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 18 ~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
+|+.|..-+||..|-+.=| +..-.||.|+..
T Consensus 55 lv~Pa~CkkCGfef~~~~i------k~pSRCP~CKSE 85 (97)
T COG3357 55 LVRPARCKKCGFEFRDDKI------KKPSRCPKCKSE 85 (97)
T ss_pred EecChhhcccCcccccccc------CCcccCCcchhh
Confidence 3555666689988865222 114579999653
No 496
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=29.35 E-value=15 Score=24.43 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=14.2
Q ss_pred CCcCcccHHHHHHHHHcCCCCCCCCCCc
Q 014913 26 PTGITYDRESIEKWLFAGKNNTCPMTKQ 53 (416)
Q Consensus 26 ~cght~c~~ci~~~~~~~~~~~CP~~~~ 53 (416)
.|||+|+..- -+.+.....||.|+.
T Consensus 10 ~Cg~~fe~~~---~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQ---KMSDDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEE---ecCCCCCCCCCCCCC
Confidence 5777776321 111122567999986
No 497
>PRK05978 hypothetical protein; Provisional
Probab=29.21 E-value=29 Score=29.15 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=7.5
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
+..||.|+..+.
T Consensus 52 ~~~C~~CG~~~~ 63 (148)
T PRK05978 52 VDHCAACGEDFT 63 (148)
T ss_pred CCCccccCCccc
Confidence 456666666664
No 498
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=29.09 E-value=54 Score=37.04 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=26.3
Q ss_pred cccCcCccccCCCceecCCcCc-----ccHHHHHHHHH-cCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGIT-----YDRESIEKWLF-AGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght-----~c~~ci~~~~~-~~~~~~CP~~~~~l~ 56 (416)
.++||=|+..-.....-.||.. +|..|=...-. +.+...||.|+.++.
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv 720 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELT 720 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccc
Confidence 3788888875544444457744 36666221100 001237999987765
No 499
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.03 E-value=80 Score=21.97 Aligned_cols=12 Identities=17% Similarity=0.659 Sum_probs=8.7
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
+.+||.|++++.
T Consensus 3 HkHC~~CG~~Ip 14 (59)
T PF09889_consen 3 HKHCPVCGKPIP 14 (59)
T ss_pred CCcCCcCCCcCC
Confidence 567777777776
No 500
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.93 E-value=24 Score=37.89 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=26.7
Q ss_pred cccCcCccc-cCCCceec-CCcCcccHHHHHHHHHc
Q 014913 9 FFLCPISLA-IMKDPVTV-PTGITYDRESIEKWLFA 42 (416)
Q Consensus 9 ~~~Cpic~~-~~~~Pv~l-~cght~c~~ci~~~~~~ 42 (416)
.=.|-+|+. ++..|..+ +|||.|=+.||++-...
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 347999984 55668765 99999999999987653
Done!