Query 014913
Match_columns 416
No_of_seqs 285 out of 2402
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 03:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 6.7E-35 2.3E-39 281.5 21.5 278 110-399 47-335 (354)
2 3nmz_A APC variant protein; pr 100.0 7.5E-34 2.5E-38 282.2 19.5 275 113-399 166-451 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 3.7E-31 1.3E-35 265.4 25.5 282 97-399 3-361 (457)
4 3l6x_A Catenin delta-1; cateni 100.0 2.1E-30 7.2E-35 263.1 26.0 288 93-400 45-386 (584)
5 3nmz_A APC variant protein; pr 100.0 3.1E-30 1.1E-34 256.2 24.4 297 95-398 69-408 (458)
6 3now_A UNC-45 protein, SD10334 100.0 1.4E-29 4.9E-34 265.1 28.0 283 94-399 419-738 (810)
7 3ul1_B Importin subunit alpha- 100.0 1.6E-29 5.6E-34 257.0 26.7 281 94-398 98-387 (510)
8 3nmw_A APC variant protein; AR 100.0 3.2E-30 1.1E-34 248.8 18.4 242 95-357 72-338 (354)
9 3tpo_A Importin subunit alpha- 100.0 8E-29 2.7E-33 253.0 28.5 282 94-399 117-407 (529)
10 3ul1_B Importin subunit alpha- 100.0 2.9E-29 9.8E-34 255.2 22.6 282 96-398 57-345 (510)
11 1xm9_A Plakophilin 1; armadill 100.0 2.6E-29 8.8E-34 252.0 21.3 278 95-398 43-449 (457)
12 3l6x_A Catenin delta-1; cateni 100.0 6.8E-29 2.3E-33 252.0 22.9 281 95-399 89-477 (584)
13 3now_A UNC-45 protein, SD10334 100.0 7.1E-29 2.4E-33 259.9 21.7 282 96-400 495-784 (810)
14 3tpo_A Importin subunit alpha- 100.0 4.3E-28 1.5E-32 247.6 25.7 286 96-399 162-450 (529)
15 4b8j_A Importin subunit alpha- 100.0 5.5E-27 1.9E-31 239.2 26.4 284 95-398 73-358 (528)
16 4b8j_A Importin subunit alpha- 100.0 1.8E-26 6.3E-31 235.3 29.7 279 96-399 117-401 (528)
17 4hxt_A De novo protein OR329; 100.0 6.8E-27 2.3E-31 214.4 22.9 242 137-402 2-245 (252)
18 4db8_A Armadillo-repeat protei 100.0 2.4E-27 8.3E-32 218.2 19.8 238 96-354 12-252 (252)
19 4hxt_A De novo protein OR329; 100.0 1E-26 3.5E-31 213.3 23.2 240 97-357 3-245 (252)
20 4db8_A Armadillo-repeat protei 99.9 1.9E-26 6.5E-31 212.2 18.7 238 137-398 12-251 (252)
21 1wa5_B Importin alpha subunit; 99.9 1.6E-25 5.3E-30 228.6 27.1 279 96-399 130-413 (530)
22 2jdq_A Importin alpha-1 subuni 99.9 4.4E-25 1.5E-29 219.8 29.6 279 96-399 64-348 (450)
23 3tt9_A Plakophilin-2; cell adh 99.9 1.2E-26 4.1E-31 209.6 14.7 199 137-354 8-230 (233)
24 1wa5_B Importin alpha subunit; 99.9 2.9E-25 1E-29 226.6 26.8 280 96-398 87-370 (530)
25 2jdq_A Importin alpha-1 subuni 99.9 1.5E-24 5.3E-29 215.8 29.2 281 96-399 107-391 (450)
26 1jdh_A Beta-catenin; beta-cate 99.9 1.2E-24 4E-29 221.3 26.9 285 95-398 58-385 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.6E-24 5.4E-29 226.4 26.3 283 93-398 11-336 (644)
28 1jdh_A Beta-catenin; beta-cate 99.9 2.6E-24 8.9E-29 218.8 27.1 283 93-398 14-339 (529)
29 3tt9_A Plakophilin-2; cell adh 99.9 2.5E-25 8.4E-30 201.0 17.3 197 97-312 9-230 (233)
30 2z6h_A Catenin beta-1, beta-ca 99.9 2.9E-24 9.8E-29 224.4 26.8 285 95-398 55-382 (644)
31 4db6_A Armadillo repeat protei 99.9 1.3E-23 4.4E-28 187.9 19.0 196 196-398 12-209 (210)
32 4db6_A Armadillo repeat protei 99.9 1.1E-23 3.8E-28 188.3 18.6 196 97-312 13-210 (210)
33 2z6g_A B-catenin; FULL-length, 99.9 6.3E-23 2.1E-27 218.4 27.6 285 95-398 191-518 (780)
34 2z6g_A B-catenin; FULL-length, 99.9 8.5E-23 2.9E-27 217.3 26.0 280 96-398 150-472 (780)
35 1xqr_A HSPBP1 protein; armadil 99.9 2.7E-22 9.2E-27 188.6 21.4 197 95-312 27-239 (296)
36 3opb_A SWI5-dependent HO expre 99.9 3.9E-22 1.3E-26 205.5 19.5 283 95-399 375-729 (778)
37 1xqr_A HSPBP1 protein; armadil 99.9 6.7E-21 2.3E-25 179.1 23.0 184 166-355 54-240 (296)
38 3opb_A SWI5-dependent HO expre 99.8 7.5E-20 2.6E-24 188.5 20.9 280 97-398 335-683 (778)
39 2kr4_A Ubiquitin conjugation f 99.8 7E-21 2.4E-25 144.4 7.3 73 4-79 9-81 (85)
40 2kre_A Ubiquitin conjugation f 99.8 7.4E-21 2.5E-25 148.5 6.6 74 3-79 23-96 (100)
41 1wgm_A Ubiquitin conjugation f 99.8 1.6E-20 5.3E-25 146.1 7.4 73 4-79 17-90 (98)
42 1t1h_A Gspef-atpub14, armadill 99.8 2.5E-19 8.7E-24 134.0 6.7 75 3-79 2-76 (78)
43 2f42_A STIP1 homology and U-bo 99.8 3.3E-19 1.1E-23 152.7 7.3 75 3-79 100-174 (179)
44 2yu4_A E3 SUMO-protein ligase 99.7 3.7E-18 1.3E-22 132.1 6.7 73 6-79 4-84 (94)
45 3grl_A General vesicular trans 99.7 1E-15 3.6E-20 154.1 23.9 290 89-398 14-342 (651)
46 3ztg_A E3 ubiquitin-protein li 99.7 2.3E-17 7.9E-22 127.4 7.8 77 3-79 7-84 (92)
47 2c2l_A CHIP, carboxy terminus 99.7 9.7E-18 3.3E-22 156.9 6.5 75 3-79 202-276 (281)
48 3fl2_A E3 ubiquitin-protein li 99.6 1.2E-15 4.1E-20 124.5 5.5 70 7-77 50-119 (124)
49 3htk_C E3 SUMO-protein ligase 99.6 1.5E-15 5.3E-20 135.8 4.5 71 6-77 178-251 (267)
50 2yur_A Retinoblastoma-binding 99.5 6.8E-15 2.3E-19 108.4 6.2 62 3-64 9-71 (74)
51 1z6u_A NP95-like ring finger p 99.5 3.9E-15 1.3E-19 125.2 5.4 70 6-77 75-145 (150)
52 3grl_A General vesicular trans 99.5 6.9E-13 2.4E-17 133.7 21.8 283 95-397 59-393 (651)
53 2bay_A PRE-mRNA splicing facto 99.5 2.3E-15 8E-20 105.8 2.2 55 9-66 3-58 (61)
54 2y43_A E3 ubiquitin-protein li 99.5 5.1E-15 1.7E-19 115.7 4.1 70 7-79 20-90 (99)
55 3lrq_A E3 ubiquitin-protein li 99.5 7.3E-15 2.5E-19 114.9 4.3 72 6-79 19-91 (100)
56 2ckl_A Polycomb group ring fin 99.5 2.3E-14 7.8E-19 113.9 4.7 68 6-76 12-84 (108)
57 2egp_A Tripartite motif-contai 99.5 1.6E-15 5.4E-20 113.5 -2.1 64 5-69 8-76 (79)
58 2ecw_A Tripartite motif-contai 99.5 1.3E-14 4.4E-19 110.0 2.7 64 5-69 15-82 (85)
59 2djb_A Polycomb group ring fin 99.5 7.8E-14 2.7E-18 102.2 6.7 58 4-64 10-68 (72)
60 2ecv_A Tripartite motif-contai 99.4 1.8E-14 6.3E-19 109.2 2.5 64 5-69 15-82 (85)
61 3hct_A TNF receptor-associated 99.4 4.5E-14 1.5E-18 114.0 4.5 71 5-77 14-84 (118)
62 2ecy_A TNF receptor-associated 99.4 6.9E-14 2.4E-18 100.6 4.9 54 5-60 11-64 (66)
63 1jm7_B BARD1, BRCA1-associated 99.4 2.2E-14 7.7E-19 115.6 2.1 67 7-78 20-87 (117)
64 3l11_A E3 ubiquitin-protein li 99.4 2.4E-14 8.2E-19 115.1 2.1 70 6-76 12-87 (115)
65 2csy_A Zinc finger protein 183 99.4 1.9E-13 6.6E-18 102.5 6.8 60 4-67 10-69 (81)
66 2ckl_B Ubiquitin ligase protei 99.4 6.2E-14 2.1E-18 120.2 4.5 71 6-77 51-122 (165)
67 4ayc_A E3 ubiquitin-protein li 99.4 5.9E-14 2E-18 116.6 4.1 64 7-75 51-114 (138)
68 1jm7_A BRCA1, breast cancer ty 99.4 1.2E-13 4.1E-18 110.5 4.9 69 7-76 19-88 (112)
69 2ysl_A Tripartite motif-contai 99.4 4E-13 1.4E-17 98.6 5.8 52 5-56 16-68 (73)
70 2ysj_A Tripartite motif-contai 99.4 4.2E-13 1.4E-17 95.5 5.4 47 5-51 16-63 (63)
71 3ltm_A Alpha-REP4; protein eng 99.4 4.2E-11 1.4E-15 106.4 19.3 192 135-403 17-208 (211)
72 1oyz_A Hypothetical protein YI 99.4 4.9E-11 1.7E-15 110.8 19.8 223 97-396 24-248 (280)
73 1rmd_A RAG1; V(D)J recombinati 99.3 4.1E-13 1.4E-17 108.0 4.0 68 6-75 20-88 (116)
74 1g25_A CDK-activating kinase a 99.3 5E-13 1.7E-17 95.7 3.8 55 8-64 2-61 (65)
75 3ltm_A Alpha-REP4; protein eng 99.3 7E-11 2.4E-15 105.0 18.6 189 94-356 17-206 (211)
76 3ltj_A Alpharep-4; protein eng 99.3 1.4E-10 4.8E-15 102.2 20.2 188 91-352 9-197 (201)
77 3knv_A TNF receptor-associated 99.3 2.3E-13 7.9E-18 113.0 1.5 70 5-75 27-104 (141)
78 3hcs_A TNF receptor-associated 99.3 7.7E-13 2.6E-17 114.0 4.5 70 5-76 14-83 (170)
79 3ng2_A RNF4, snurf, ring finge 99.3 7.8E-13 2.7E-17 96.5 3.8 58 4-64 5-69 (71)
80 3m62_A Ubiquitin conjugation f 99.3 1.5E-12 5.1E-17 135.9 6.5 73 4-79 886-959 (968)
81 2ecj_A Tripartite motif-contai 99.3 2.1E-12 7.1E-17 90.2 4.7 47 5-51 11-58 (58)
82 2ct2_A Tripartite motif protei 99.3 4.3E-12 1.5E-16 96.7 6.8 53 4-56 10-67 (88)
83 2d8t_A Dactylidin, ring finger 99.3 1.2E-12 4.1E-17 95.5 3.5 49 6-56 12-60 (71)
84 3ltj_A Alpharep-4; protein eng 99.3 2.7E-10 9.2E-15 100.3 18.8 186 135-397 12-197 (201)
85 1oyz_A Hypothetical protein YI 99.2 3.6E-10 1.2E-14 104.9 18.1 224 95-394 53-278 (280)
86 2ea6_A Ring finger protein 4; 99.2 5.4E-12 1.8E-16 91.4 4.0 51 4-56 10-67 (69)
87 1e4u_A Transcriptional repress 99.2 1.4E-11 4.6E-16 91.1 5.7 52 4-56 6-61 (78)
88 2xeu_A Ring finger protein 4; 99.2 3.1E-12 1.1E-16 91.2 2.2 53 8-63 2-61 (64)
89 2ect_A Ring finger protein 126 99.2 1.4E-11 5E-16 91.4 4.8 58 4-64 10-70 (78)
90 4fdd_A Transportin-1; heat rep 99.1 1.2E-09 4E-14 117.4 18.2 276 96-400 128-431 (852)
91 1chc_A Equine herpes virus-1 r 99.1 4.2E-11 1.4E-15 86.4 4.2 47 8-56 4-51 (68)
92 4gmo_A Putative uncharacterize 99.1 2.6E-10 9E-15 119.4 12.0 196 197-399 35-259 (684)
93 2kiz_A E3 ubiquitin-protein li 99.1 1.2E-10 4.2E-15 84.2 6.5 50 5-56 10-62 (69)
94 2ecm_A Ring finger and CHY zin 99.1 6.1E-11 2.1E-15 81.6 4.3 47 8-56 4-54 (55)
95 1bor_A Transcription factor PM 99.1 1.9E-11 6.4E-16 84.5 1.4 45 7-56 4-48 (56)
96 1iym_A EL5; ring-H2 finger, ub 99.1 7.6E-11 2.6E-15 81.1 3.6 49 6-56 2-54 (55)
97 2ecn_A Ring finger protein 141 99.1 2.9E-11 1E-15 87.8 1.5 49 5-56 11-59 (70)
98 2ep4_A Ring finger protein 24; 99.1 1.7E-10 5.9E-15 84.6 5.6 50 5-56 11-63 (74)
99 4ap4_A E3 ubiquitin ligase RNF 99.0 4.8E-11 1.6E-15 98.2 2.1 52 7-61 5-63 (133)
100 2l0b_A E3 ubiquitin-protein li 99.0 1.2E-10 4.2E-15 89.0 4.2 49 6-56 37-88 (91)
101 4fdd_A Transportin-1; heat rep 99.0 4.8E-09 1.6E-13 112.6 17.1 271 97-398 216-512 (852)
102 1v87_A Deltex protein 2; ring- 99.0 2E-10 6.7E-15 91.9 4.7 51 6-56 22-93 (114)
103 1x4j_A Ring finger protein 38; 99.0 1.5E-10 5.2E-15 85.1 3.4 48 7-56 21-71 (75)
104 4gmo_A Putative uncharacterize 99.0 5.5E-09 1.9E-13 109.4 14.9 196 138-352 35-257 (684)
105 1b3u_A Protein (protein phosph 98.9 5.1E-08 1.7E-12 99.5 20.3 253 108-398 177-431 (588)
106 4ic3_A E3 ubiquitin-protein li 98.9 2E-10 7E-15 84.1 1.7 44 7-56 22-66 (74)
107 1b3u_A Protein (protein phosph 98.9 3.7E-08 1.3E-12 100.5 18.4 264 99-399 284-549 (588)
108 1ibr_B P95, importin beta-1 su 98.9 2.1E-08 7.1E-13 99.2 15.9 280 96-401 128-440 (462)
109 2y1n_A E3 ubiquitin-protein li 98.8 2E-09 7E-14 102.6 5.2 47 9-56 332-378 (389)
110 4ap4_A E3 ubiquitin ligase RNF 98.8 8.7E-10 3E-14 90.5 1.6 54 7-63 70-130 (133)
111 2ecg_A Baculoviral IAP repeat- 98.8 2.9E-09 9.8E-14 78.2 4.1 44 7-56 23-67 (75)
112 2vje_A E3 ubiquitin-protein li 98.8 4.1E-09 1.4E-13 74.7 3.9 50 5-56 4-56 (64)
113 2vgl_B AP-2 complex subunit be 98.8 2.7E-07 9.3E-12 94.9 19.0 264 99-400 124-421 (591)
114 2vgl_B AP-2 complex subunit be 98.8 1.5E-07 5.2E-12 96.8 16.9 261 97-400 50-313 (591)
115 1wim_A KIAA0161 protein; ring 98.7 1.8E-09 6E-14 83.1 1.3 69 7-77 3-84 (94)
116 2ecl_A Ring-box protein 2; RNF 98.7 6.2E-09 2.1E-13 77.6 3.6 47 8-56 14-75 (81)
117 1w63_A Adapter-related protein 98.7 1.2E-06 4.2E-11 90.5 21.1 250 98-399 144-415 (618)
118 2vje_B MDM4 protein; proto-onc 98.7 9.6E-09 3.3E-13 72.5 3.5 47 8-56 6-55 (63)
119 2bpt_A Importin beta-1 subunit 98.6 8.8E-07 3E-11 94.6 18.8 263 108-399 382-669 (861)
120 3dpl_R Ring-box protein 1; ubi 98.6 3.6E-08 1.2E-12 77.1 4.5 46 9-56 37-100 (106)
121 1u6g_C TIP120 protein, CAND1; 98.6 3.8E-07 1.3E-11 101.7 14.5 272 96-400 6-286 (1230)
122 2yho_A E3 ubiquitin-protein li 98.6 1.1E-08 3.7E-13 75.7 1.1 44 7-56 16-60 (79)
123 1qgr_A Protein (importin beta 98.5 8.1E-06 2.8E-10 87.3 22.8 279 96-401 128-440 (876)
124 2bpt_A Importin beta-1 subunit 98.5 1.5E-06 5.2E-11 92.8 16.1 262 108-400 424-713 (861)
125 2ea5_A Cell growth regulator w 98.5 1.1E-07 3.8E-12 68.0 4.8 44 7-56 13-57 (68)
126 1qgr_A Protein (importin beta 98.5 5.3E-06 1.8E-10 88.7 20.0 275 99-401 175-482 (876)
127 1te4_A Conserved protein MTH18 98.5 6.6E-08 2.3E-12 78.9 3.7 120 136-308 11-130 (131)
128 3b2a_A TON_1937, putative unch 98.5 2.2E-05 7.6E-10 68.9 19.3 226 137-398 33-261 (265)
129 2d8s_A Cellular modulator of i 98.4 2.2E-07 7.4E-12 68.6 5.4 51 6-56 12-69 (80)
130 3b2a_A TON_1937, putative unch 98.4 4.1E-06 1.4E-10 73.5 13.1 186 96-313 33-220 (265)
131 2qk2_A LP04448P; mini spindles 98.4 5E-06 1.7E-10 75.1 14.4 189 198-401 17-208 (242)
132 3dad_A FH1/FH2 domain-containi 98.4 1.5E-05 5.2E-10 74.1 17.6 187 97-301 119-326 (339)
133 1ibr_B P95, importin beta-1 su 98.4 1.4E-05 4.7E-10 78.7 18.3 305 61-401 11-360 (462)
134 2qk2_A LP04448P; mini spindles 98.4 3.3E-06 1.1E-10 76.3 12.8 179 101-312 20-206 (242)
135 1w63_A Adapter-related protein 98.4 2E-05 6.8E-10 81.4 20.1 257 98-399 36-343 (618)
136 1u6g_C TIP120 protein, CAND1; 98.2 2E-05 6.7E-10 87.9 16.9 230 96-356 48-287 (1230)
137 4a0k_B E3 ubiquitin-protein li 98.2 1.7E-07 5.7E-12 74.3 0.0 45 10-56 49-111 (117)
138 1te4_A Conserved protein MTH18 98.2 1.5E-07 5E-12 76.9 -0.5 119 196-350 12-130 (131)
139 2qk1_A Protein STU2; STU2P, XM 98.1 1.7E-05 6E-10 72.0 11.4 190 101-311 21-220 (249)
140 2db0_A 253AA long hypothetical 98.1 0.00077 2.6E-08 56.9 19.9 215 94-353 30-246 (253)
141 2vgl_A Adaptor protein complex 98.0 0.00091 3.1E-08 68.9 23.1 253 100-398 150-433 (621)
142 2qk1_A Protein STU2; STU2P, XM 98.0 7.1E-05 2.4E-09 68.0 12.9 185 165-357 29-224 (249)
143 3dad_A FH1/FH2 domain-containi 97.9 0.00065 2.2E-08 63.2 17.8 180 198-381 120-318 (339)
144 2iw3_A Elongation factor 3A; a 97.9 0.0028 9.6E-08 67.8 24.7 270 96-401 54-327 (986)
145 3vk6_A E3 ubiquitin-protein li 97.9 1.1E-05 3.6E-10 60.7 4.2 45 11-56 3-48 (101)
146 2vgl_A Adaptor protein complex 97.7 0.0033 1.1E-07 64.7 22.0 226 98-353 189-433 (621)
147 4ady_A RPN2, 26S proteasome re 97.7 0.0032 1.1E-07 66.8 21.4 223 110-398 452-676 (963)
148 2ct0_A Non-SMC element 1 homol 97.6 8.9E-05 3E-09 53.4 4.8 47 10-56 16-63 (74)
149 2db0_A 253AA long hypothetical 97.5 0.018 6.3E-07 48.6 19.3 213 137-397 32-245 (253)
150 1ho8_A Vacuolar ATP synthase s 97.5 0.054 1.8E-06 52.9 25.7 246 135-399 75-351 (480)
151 2iw3_A Elongation factor 3A; a 97.5 0.0022 7.5E-08 68.7 16.9 260 98-400 16-282 (986)
152 1vyx_A ORF K3, K3RING; zinc-bi 97.4 0.00012 3.9E-09 50.6 3.9 49 8-56 5-58 (60)
153 4ady_A RPN2, 26S proteasome re 97.3 0.075 2.6E-06 56.5 25.4 193 165-397 521-718 (963)
154 1ho8_A Vacuolar ATP synthase s 97.3 0.011 3.9E-07 57.7 17.7 227 167-399 183-477 (480)
155 3tjz_B Coatomer subunit gamma; 97.2 0.046 1.6E-06 51.8 20.1 166 110-313 42-207 (355)
156 2fv2_A RCD1 required for cell 97.1 0.024 8.1E-07 50.5 16.1 244 96-351 3-266 (268)
157 1wa5_C Importin alpha RE-expor 97.1 0.014 4.9E-07 63.1 17.9 225 165-400 418-672 (960)
158 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.00062 2.1E-08 52.4 2.9 34 8-41 2-38 (101)
159 3k1l_B Fancl; UBC, ring, RWD, 96.7 0.00036 1.2E-08 64.7 0.6 47 10-56 309-372 (381)
160 3tjz_B Coatomer subunit gamma; 96.6 0.0067 2.3E-07 57.6 8.7 200 165-399 117-317 (355)
161 3i2d_A E3 SUMO-protein ligase 96.5 0.0023 7.7E-08 60.3 4.7 64 9-73 249-315 (371)
162 4fo9_A E3 SUMO-protein ligase 96.1 0.0047 1.6E-07 58.0 4.7 64 9-73 215-281 (360)
163 3ebb_A Phospholipase A2-activa 95.9 0.14 4.6E-06 47.5 13.9 137 165-303 161-298 (304)
164 4ffb_C Protein STU2; tubulin f 95.9 0.25 8.5E-06 44.9 15.4 183 101-312 14-213 (278)
165 2x1g_F Cadmus; transport prote 95.2 1.7 5.7E-05 46.8 21.4 220 165-401 477-725 (971)
166 4ffb_C Protein STU2; tubulin f 95.2 0.13 4.3E-06 46.9 10.7 193 197-401 11-215 (278)
167 3oc3_A Helicase MOT1, MOT1; re 95.0 0.26 9E-06 49.0 12.5 253 99-394 177-432 (800)
168 2of3_A ZYG-9; multifunctional 94.9 0.44 1.5E-05 43.1 13.2 172 107-311 58-236 (266)
169 2f31_A Diaphanous protein homo 94.6 1.5 5E-05 38.7 15.7 183 101-291 5-209 (233)
170 3nw0_A Non-structural maintena 94.6 0.033 1.1E-06 49.6 4.8 47 10-56 181-228 (238)
171 4hat_C Exportin-1; heat repeat 94.5 0.24 8.2E-06 53.8 12.2 150 208-362 465-627 (1023)
172 2fv2_A RCD1 required for cell 94.4 0.31 1.1E-05 43.4 10.4 153 113-278 74-234 (268)
173 3eg5_B Protein diaphanous homo 94.2 2.1 7.2E-05 40.8 17.0 186 99-292 69-276 (383)
174 2x1g_F Cadmus; transport prote 94.1 0.88 3E-05 49.0 15.8 177 208-399 476-664 (971)
175 1wa5_C Importin alpha RE-expor 94.1 2.1 7.3E-05 46.0 18.8 179 165-352 471-669 (960)
176 3ebb_A Phospholipase A2-activa 93.8 1.4 4.7E-05 40.6 14.2 176 138-336 104-287 (304)
177 3oc3_A Helicase MOT1, MOT1; re 93.5 0.17 5.8E-06 50.3 7.7 153 210-394 242-400 (800)
178 3u0r_A Apoptosis inhibitor 5; 93.2 1.3 4.6E-05 43.0 13.3 121 207-350 39-160 (507)
179 2x19_B Importin-13; nuclear tr 93.0 6.9 0.00024 41.8 20.5 220 165-401 462-717 (963)
180 2x19_B Importin-13; nuclear tr 91.8 1.4 4.8E-05 47.3 13.1 177 206-397 459-645 (963)
181 2bnx_A Diaphanous protein homo 91.5 7.5 0.00026 37.0 16.4 184 100-291 8-213 (386)
182 1weo_A Cellulose synthase, cat 91.4 0.4 1.4E-05 34.9 5.4 46 10-56 17-69 (93)
183 3c2g_A SYS-1 protein; beta-cat 90.8 5.5 0.00019 37.2 13.7 127 176-308 266-400 (619)
184 3eg5_B Protein diaphanous homo 90.3 1.9 6.4E-05 41.2 10.9 122 274-396 104-244 (383)
185 3u0r_A Apoptosis inhibitor 5; 90.1 14 0.00049 35.9 16.6 160 95-292 28-189 (507)
186 2of3_A ZYG-9; multifunctional 90.0 7.8 0.00027 34.8 14.1 182 199-400 49-238 (266)
187 1upk_A MO25 protein; transfera 89.4 13 0.00045 34.4 17.9 247 131-399 72-333 (341)
188 1lrv_A LRV, leucine-rich repea 88.3 0.33 1.1E-05 43.3 3.7 35 357-393 207-241 (244)
189 4hat_C Exportin-1; heat repeat 88.0 5.7 0.00019 43.1 13.8 146 109-271 467-621 (1023)
190 3c2g_A SYS-1 protein; beta-cat 88.0 7.2 0.00025 36.4 12.2 114 220-336 266-379 (619)
191 1x5b_A Signal transducing adap 87.9 1.7 6E-05 36.0 7.7 80 325-405 53-132 (163)
192 3m1i_C Exportin-1; heat repeat 87.7 16 0.00055 39.6 17.4 225 92-354 12-264 (1049)
193 1lsh_A Lipovitellin (LV-1N, LV 87.7 12 0.0004 40.7 16.2 104 197-312 392-508 (1056)
194 2cs3_A Protein C14ORF4, MY039 87.7 0.76 2.6E-05 32.6 4.4 44 7-50 13-63 (93)
195 3ibv_A Exportin-T; karyopherin 87.4 31 0.0011 37.1 19.2 234 92-366 2-273 (980)
196 3ibv_A Exportin-T; karyopherin 85.8 16 0.00056 39.3 15.9 221 168-400 459-732 (980)
197 3m1i_C Exportin-1; heat repeat 84.7 6.3 0.00022 42.8 12.2 154 198-356 453-621 (1049)
198 3zyq_A Hepatocyte growth facto 84.7 1.7 6E-05 38.1 6.4 80 325-405 46-125 (226)
199 2bnx_A Diaphanous protein homo 84.1 7.7 0.00026 36.9 11.1 118 279-396 46-182 (386)
200 1dvp_A HRS, hepatocyte growth 82.8 2.5 8.5E-05 36.9 6.6 81 325-406 43-123 (220)
201 2f31_A Diaphanous protein homo 82.5 24 0.00082 30.7 17.1 145 237-384 42-214 (233)
202 3ldz_A STAM-1, signal transduc 82.3 3.6 0.00012 33.1 6.8 79 325-405 43-121 (140)
203 3l9t_A Putative uncharacterize 81.4 10 0.00035 33.3 9.8 140 94-271 68-210 (240)
204 3g2s_A C-terminal fragment of 81.0 4.2 0.00014 33.1 6.8 80 325-405 49-133 (149)
205 3mjh_B Early endosome antigen 80.9 0.34 1.2E-05 28.7 0.1 16 8-23 4-19 (34)
206 1mhq_A ADP-ribosylation factor 80.4 3.3 0.00011 33.7 6.0 80 325-405 39-123 (148)
207 1juq_A ADP-ribosylation factor 78.7 3.8 0.00013 34.2 6.0 77 325-402 51-132 (171)
208 2ko5_A Ring finger protein Z; 78.0 1.9 6.5E-05 31.7 3.3 45 8-56 27-72 (99)
209 3a6p_A Exportin-5; exportin-5, 77.4 78 0.0027 34.8 17.7 208 109-356 27-279 (1204)
210 3l9t_A Putative uncharacterize 75.0 20 0.00067 31.5 9.7 136 198-357 73-211 (240)
211 1lrv_A LRV, leucine-rich repea 74.6 1.1 3.7E-05 40.0 1.6 13 67-79 40-52 (244)
212 1elk_A Target of MYB1; superhe 74.0 9.7 0.00033 31.1 7.2 80 325-405 54-137 (157)
213 1lsh_A Lipovitellin (LV-1N, LV 73.0 57 0.0019 35.4 14.9 125 108-271 453-579 (1056)
214 2jne_A Hypothetical protein YF 72.1 0.1 3.5E-06 38.6 -4.7 40 10-56 33-72 (101)
215 1m3v_A FLIN4, fusion of the LI 71.5 2.4 8.2E-05 33.1 2.8 46 9-56 32-80 (122)
216 1x5b_A Signal transducing adap 70.3 16 0.00055 30.0 7.7 72 197-268 53-125 (163)
217 2bay_A PRE-mRNA splicing facto 69.0 2.8 9.6E-05 28.3 2.3 35 45-80 3-40 (61)
218 3ldz_A STAM-1, signal transduc 68.6 14 0.00048 29.5 6.9 71 197-268 43-114 (140)
219 2xqn_T Testin, TESS; metal-bin 68.4 3.4 0.00011 32.3 3.0 45 8-56 29-74 (126)
220 2jvx_A NF-kappa-B essential mo 68.4 1.4 4.7E-05 24.8 0.5 15 8-22 2-16 (28)
221 3gjx_A Exportin-1; transport, 68.2 44 0.0015 36.3 12.6 100 209-311 492-595 (1073)
222 1upk_A MO25 protein; transfera 68.0 76 0.0026 29.3 19.8 193 100-314 82-286 (341)
223 6rxn_A Rubredoxin; electron tr 67.7 1.7 5.8E-05 27.6 0.9 13 5-17 26-38 (46)
224 1e8j_A Rubredoxin; iron-sulfur 63.6 2.6 8.8E-05 27.6 1.2 13 5-17 32-44 (52)
225 4rxn_A Rubredoxin; electron tr 63.3 2.3 7.8E-05 28.0 0.9 13 5-17 32-44 (54)
226 1mhq_A ADP-ribosylation factor 63.0 27 0.00091 28.2 7.5 73 196-268 38-116 (148)
227 3qml_C Protein SLS1, nucleotid 61.0 98 0.0034 28.2 11.9 149 197-352 23-188 (315)
228 3o2t_A Symplekin; heat repeat, 60.6 1.1E+02 0.0039 28.8 14.8 195 87-311 16-256 (386)
229 3zyq_A Hepatocyte growth facto 60.5 19 0.00066 31.3 6.7 72 197-268 46-118 (226)
230 3g2s_A C-terminal fragment of 60.5 35 0.0012 27.5 7.8 72 197-268 49-126 (149)
231 1yk4_A Rubredoxin, RD; electro 59.4 2.9 0.0001 27.3 0.9 13 5-17 31-43 (52)
232 2o35_A Hypothetical protein DU 59.0 3.8 0.00013 30.3 1.5 13 30-42 42-54 (105)
233 2gmg_A Hypothetical protein PF 58.8 3.7 0.00013 31.0 1.4 31 18-55 64-94 (105)
234 2v3b_B Rubredoxin 2, rubredoxi 58.3 3.1 0.00011 27.5 0.8 13 5-17 32-44 (55)
235 2kn9_A Rubredoxin; metalloprot 58.2 3.5 0.00012 29.6 1.2 13 5-17 56-68 (81)
236 3fyb_A Protein of unknown func 58.1 4.1 0.00014 30.1 1.5 13 30-42 41-53 (104)
237 1juq_A ADP-ribosylation factor 57.6 32 0.0011 28.4 7.3 72 197-268 51-128 (171)
238 3qml_C Protein SLS1, nucleotid 56.0 1.2E+02 0.0041 27.6 11.5 139 166-310 42-188 (315)
239 2xjy_A Rhombotin-2; oncoprotei 55.4 10 0.00034 29.7 3.7 48 7-56 27-77 (131)
240 1dvp_A HRS, hepatocyte growth 55.2 24 0.00081 30.5 6.4 71 197-267 43-114 (220)
241 1dx8_A Rubredoxin; electron tr 54.7 3.8 0.00013 28.6 0.9 13 5-17 36-48 (70)
242 1rut_X Flinc4, fusion protein 52.6 3.5 0.00012 34.9 0.5 47 8-56 31-80 (188)
243 3a6p_A Exportin-5; exportin-5, 51.5 2.8E+02 0.0094 30.4 16.1 180 108-312 60-277 (1204)
244 2rgt_A Fusion of LIM/homeobox 50.8 18 0.00062 29.7 4.7 46 7-56 31-76 (169)
245 2pv0_B DNA (cytosine-5)-methyl 50.3 27 0.00092 33.0 6.1 70 9-79 93-172 (386)
246 3vhs_A ATPase wrnip1; zinc fin 49.6 3.8 0.00013 22.0 0.2 11 10-20 7-17 (29)
247 1wgm_A Ubiquitin conjugation f 49.4 14 0.0005 27.3 3.5 36 45-80 22-59 (98)
248 2jtn_A LIM domain-binding prot 49.0 14 0.00049 30.8 3.8 45 8-56 86-130 (182)
249 2cup_A Skeletal muscle LIM-pro 48.8 5.8 0.0002 29.5 1.1 45 8-56 32-77 (101)
250 3gjx_A Exportin-1; transport, 48.5 1.3E+02 0.0043 32.7 11.9 141 197-354 29-179 (1073)
251 3gae_A Protein DOA1; UFD3, CDC 48.4 62 0.0021 28.5 8.1 102 165-272 103-221 (253)
252 1iml_A CRIP, cysteine rich int 47.3 13 0.00044 25.8 2.8 45 7-55 25-71 (76)
253 2kr4_A Ubiquitin conjugation f 46.6 13 0.00046 26.6 2.8 36 45-80 14-50 (85)
254 3uk3_C Zinc finger protein 217 46.3 14 0.00048 23.3 2.7 40 9-56 4-43 (57)
255 3gs3_A Symplekin, LD45768P; he 46.1 91 0.0031 27.6 8.8 86 168-265 31-116 (257)
256 2kre_A Ubiquitin conjugation f 46.0 14 0.00049 27.5 3.0 36 45-80 29-65 (100)
257 2ct7_A Ring finger protein 31; 45.6 3.1 0.00011 30.3 -0.8 29 11-39 27-61 (86)
258 1wfh_A Zinc finger (AN1-like) 43.6 24 0.00081 24.0 3.4 27 7-33 13-40 (64)
259 2jmo_A Parkin; IBR, E3 ligase, 42.9 3 0.0001 29.9 -1.2 32 9-40 25-69 (80)
260 3rru_A TOM1L1 protein; structu 41.1 24 0.00082 28.6 3.8 80 325-405 54-137 (152)
261 3gae_A Protein DOA1; UFD3, CDC 40.9 47 0.0016 29.3 6.0 102 207-311 101-217 (253)
262 2d8x_A Protein pinch; LIM doma 40.9 20 0.00069 24.3 2.9 22 11-32 7-28 (70)
263 3gs3_A Symplekin, LD45768P; he 40.6 1.9E+02 0.0065 25.4 13.9 143 95-266 14-171 (257)
264 1x61_A Thyroid receptor intera 40.5 27 0.00092 23.7 3.6 34 9-42 33-67 (72)
265 2jrp_A Putative cytoplasmic pr 40.1 1.2 4E-05 32.1 -3.7 40 10-56 3-42 (81)
266 4gzn_C ZFP-57, zinc finger pro 39.6 14 0.00049 24.5 1.9 36 10-56 5-43 (60)
267 1elk_A Target of MYB1; superhe 39.3 92 0.0031 25.1 7.2 72 197-268 54-130 (157)
268 1bbo_A Human enhancer-binding 36.7 15 0.00053 23.1 1.7 36 10-56 2-40 (57)
269 2fiy_A Protein FDHE homolog; F 36.4 2.4 8.1E-05 39.1 -3.3 46 7-54 180-231 (309)
270 2dar_A PDZ and LIM domain prot 36.2 28 0.00095 25.0 3.2 36 11-56 27-62 (90)
271 3pst_A Protein DOA1; protein d 36.2 1.9E+02 0.0066 27.5 9.8 132 169-312 243-390 (425)
272 2l4z_A DNA endonuclease RBBP8, 35.6 21 0.00072 27.7 2.6 37 10-56 62-99 (123)
273 2kkx_A Uncharacterized protein 35.5 53 0.0018 24.4 4.4 51 4-56 21-78 (102)
274 2d8z_A Four and A half LIM dom 35.3 30 0.001 23.3 3.1 30 10-39 32-62 (70)
275 2lbm_A Transcriptional regulat 35.2 31 0.0011 27.6 3.5 43 8-52 62-115 (142)
276 2cur_A Skeletal muscle LIM-pro 35.1 38 0.0013 22.7 3.6 31 10-40 32-63 (69)
277 1wig_A KIAA1808 protein; LIM d 34.9 17 0.00058 25.1 1.7 31 9-39 31-63 (73)
278 1tac_A TAT protein; transcript 34.7 21 0.00073 25.5 2.1 19 24-51 19-37 (86)
279 3l3f_X Protein DOA1, DOA1/UFD3 34.7 92 0.0032 29.1 7.2 100 165-270 212-328 (362)
280 2l43_A N-teminal domain from h 33.6 7.2 0.00025 28.5 -0.5 56 5-61 21-81 (88)
281 1x6a_A LIMK-2, LIM domain kina 33.5 40 0.0014 23.5 3.6 21 11-31 17-37 (81)
282 2lce_A B-cell lymphoma 6 prote 33.3 32 0.0011 23.1 3.0 39 7-56 15-56 (74)
283 1j2o_A FLIN2, fusion of rhombo 33.3 48 0.0016 25.0 4.3 36 7-42 28-66 (114)
284 1wyh_A SLIM 2, skeletal muscle 33.3 22 0.00076 24.1 2.1 31 10-40 34-65 (72)
285 1vdy_A Hypothetical protein (R 32.5 59 0.002 25.9 4.7 76 326-402 51-134 (140)
286 2epq_A POZ-, at HOOK-, and zin 32.4 29 0.001 20.5 2.4 14 9-22 10-23 (45)
287 3pst_A Protein DOA1; protein d 32.2 1.2E+02 0.0041 29.0 7.6 100 165-270 275-391 (425)
288 2j9u_B VPS36, vacuolar protein 32.1 18 0.00062 25.3 1.4 16 1-16 9-24 (76)
289 1s24_A Rubredoxin 2; electron 31.8 17 0.00058 26.4 1.2 40 8-55 34-78 (87)
290 1nyp_A Pinch protein; LIM doma 31.3 25 0.00086 23.4 2.1 21 11-31 7-27 (66)
291 1x64_A Alpha-actinin-2 associa 30.3 27 0.00091 25.1 2.2 39 8-56 24-62 (89)
292 2l3k_A Rhombotin-2, linker, LI 29.8 31 0.0011 26.5 2.7 36 7-42 34-71 (123)
293 1x6e_A Zinc finger protein 24; 29.4 19 0.00065 24.2 1.2 38 8-56 13-53 (72)
294 1vd4_A Transcription initiatio 28.9 3 0.0001 27.8 -3.1 12 45-56 39-50 (62)
295 2lv2_A Insulinoma-associated p 28.7 42 0.0015 23.9 3.0 38 8-56 27-67 (85)
296 2ytm_A Zinc finger protein 28 27.9 74 0.0025 18.7 3.8 14 9-22 12-25 (46)
297 3a1b_A DNA (cytosine-5)-methyl 27.9 50 0.0017 26.9 3.6 42 9-52 79-132 (159)
298 3o2t_A Symplekin; heat repeat, 27.9 1.4E+02 0.0049 28.0 7.3 105 196-310 63-182 (386)
299 2eps_A POZ-, at HOOK-, and zin 27.7 1.1E+02 0.0036 18.9 4.7 39 7-56 10-52 (54)
300 1wff_A Riken cDNA 2810002D23 p 27.6 34 0.0012 24.6 2.2 25 9-33 25-51 (85)
301 2ctd_A Zinc finger protein 512 27.0 31 0.0011 25.0 2.1 12 45-56 62-73 (96)
302 3l3f_X Protein DOA1, DOA1/UFD3 26.9 1.9E+02 0.0064 27.0 7.8 131 169-311 180-326 (362)
303 2ee8_A Protein ODD-skipped-rel 26.9 55 0.0019 23.6 3.5 15 7-21 15-29 (106)
304 2dj7_A Actin-binding LIM prote 26.8 26 0.00089 24.7 1.6 39 8-56 14-53 (80)
305 2cor_A Pinch protein; LIM doma 26.7 22 0.00076 24.9 1.2 37 10-56 16-52 (79)
306 1wg2_A Zinc finger (AN1-like) 26.6 61 0.0021 21.9 3.2 26 8-33 14-40 (64)
307 1wil_A KIAA1045 protein; ring 26.5 75 0.0026 22.8 3.8 34 5-39 11-47 (89)
308 3vld_A DNA mismatch repair pro 26.4 4.6E+02 0.016 25.5 12.3 107 239-353 117-225 (500)
309 2d8y_A Eplin protein; LIM doma 26.0 39 0.0013 24.3 2.4 30 10-39 43-73 (91)
310 2f42_A STIP1 homology and U-bo 25.8 31 0.0011 28.8 2.1 35 45-79 106-141 (179)
311 2wbs_A Krueppel-like factor 4; 25.6 55 0.0019 22.6 3.2 15 7-21 3-19 (89)
312 1x3h_A Leupaxin; paxillin fami 25.4 67 0.0023 22.1 3.6 18 11-28 17-34 (80)
313 1ard_A Yeast transcription fac 25.3 24 0.00084 18.0 1.0 12 10-21 3-14 (29)
314 1x62_A C-terminal LIM domain p 25.3 31 0.001 24.1 1.7 40 7-56 13-52 (79)
315 2ctu_A Zinc finger protein 483 25.3 15 0.0005 24.5 -0.0 34 8-56 17-50 (73)
316 2cuq_A Four and A half LIM dom 24.7 52 0.0018 22.8 2.9 32 9-40 41-73 (80)
317 2l5u_A Chromodomain-helicase-D 24.7 40 0.0014 22.4 2.1 49 3-53 5-57 (61)
318 2c6a_A Ubiquitin-protein ligas 24.5 17 0.00059 22.8 0.2 27 3-35 7-33 (46)
319 2dmd_A Zinc finger protein 64, 24.5 77 0.0026 22.2 3.9 49 8-56 7-75 (96)
320 2ffw_A Midline-1; B-BOX, ring 24.4 51 0.0017 23.1 2.7 33 7-39 28-63 (78)
321 1znf_A 31ST zinc finger from X 24.4 27 0.00092 17.5 1.0 12 10-21 2-13 (27)
322 2m0e_A Zinc finger and BTB dom 24.2 31 0.0011 17.4 1.3 12 10-21 3-14 (29)
323 1z60_A TFIIH basal transcripti 24.2 43 0.0015 22.3 2.1 39 11-51 17-58 (59)
324 1g47_A Pinch protein; LIM doma 23.9 27 0.00093 24.0 1.2 29 10-38 40-69 (77)
325 2gqj_A Zinc finger protein KIA 23.7 31 0.0011 24.9 1.5 41 8-56 23-65 (98)
326 1klr_A Zinc finger Y-chromosom 23.2 34 0.0012 17.5 1.3 13 10-22 3-15 (30)
327 1b8t_A Protein (CRP1); LIM dom 23.1 51 0.0018 27.5 3.0 36 7-42 32-68 (192)
328 1llm_C Chimera of ZIF23-GCN4; 22.9 39 0.0013 23.6 1.9 40 9-56 3-42 (88)
329 1p7a_A BF3, BKLF, kruppel-like 22.6 28 0.00096 19.3 0.9 15 8-22 10-24 (37)
330 2lri_C Autoimmune regulator; Z 22.2 67 0.0023 21.8 2.9 45 8-54 11-59 (66)
331 2kpi_A Uncharacterized protein 22.1 48 0.0016 21.7 2.0 15 5-19 6-20 (56)
332 2ebt_A Krueppel-like factor 5; 22.0 1.4E+02 0.0047 20.9 5.0 50 7-56 13-86 (100)
333 2dlq_A GLI-kruppel family memb 21.4 78 0.0027 23.4 3.6 15 8-22 6-20 (124)
334 1paa_A Yeast transcription fac 21.3 38 0.0013 17.4 1.2 13 10-22 3-15 (30)
335 2k5c_A Uncharacterized protein 21.2 48 0.0016 23.5 1.9 53 10-64 9-69 (95)
336 1j8f_A SIRT2, sirtuin 2, isofo 20.8 71 0.0024 29.3 3.6 30 27-56 167-196 (323)
337 1zoq_C CREB-binding protein, i 20.4 92 0.0032 19.3 2.8 26 369-394 2-27 (47)
338 1wys_A Riken cDNA 2310008M20 p 20.3 96 0.0033 21.7 3.4 24 10-33 15-41 (75)
339 1x4k_A Skeletal muscle LIM-pro 20.2 62 0.0021 21.7 2.5 29 10-38 34-63 (72)
340 3vth_A Hydrogenase maturation 20.2 38 0.0013 35.2 1.8 51 6-56 108-194 (761)
341 1yc5_A NAD-dependent deacetyla 20.1 54 0.0019 28.7 2.6 33 24-56 124-156 (246)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=6.7e-35 Score=281.54 Aligned_cols=278 Identities=14% Similarity=0.116 Sum_probs=230.8
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSL 189 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 189 (416)
+.+.+|+++|.+++.+ +++|+.|++.|++++|+.+|.++.... | ...+..++.++++|+++|.||+.+++..+..
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~--~--~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMY--G--LTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHH--T--TSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccc--c--ccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5556899999999987 679999999999999999996421000 0 0000113679999999999999988766776
Q ss_pred hccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc-cCchhhHhhhhhHHHHHHHHh-ccCCChHHHHHHHHHHHHhC
Q 014913 190 VMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV-AEPMQLISLRQELFVEVIQVL-HDHISQQASKSALEVLVNIC 267 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~nLs 267 (416)
+....| +|+.|+.+|++++.++++.|+++|.+|+.. ++.++..+.+.|+||+||++| +++ +.++++.|+++|+||+
T Consensus 122 i~~~~G-aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 122 LCSMKG-CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHCHH-HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHcCC-cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 643353 799999999999999999999999999975 233444445669999999975 566 8899999999999999
Q ss_pred C-CCcchHHHH-hhCcHHHHHHHhhcccchh---hhHHHHHHHHHHHcC----ChhhHHHHHhcCCchHHHHHHHHhcCh
Q 014913 268 P-WGRNRIKGV-EAGAVSILIDLLLDSSLER---RASEMILTVLDLLCQ----CAEGRAELLKHGAGLAIVSKKILRVSQ 338 (416)
Q Consensus 268 ~-~~~n~~~i~-~~G~v~~Lv~lL~~~~~~~---~~~~~a~~~L~~La~----~~~~~~~i~~~~~~v~~Lv~~l~~~~~ 338 (416)
. .++|+..++ ..|+||+|+++|..+. +. ++++.|+++|+||+. +++++..+++ .|+++.|+++|.+++.
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~~-~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYRS-QTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSL 277 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCCC-SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCH
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccCC-CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCCh
Confidence 8 557898888 7999999999998762 22 489999999999995 7888888877 8999999998888888
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 339 VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 339 ~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
..++.|+++|++|+..+. +.++.+++.|+++.|+.+|++. +++.|+.|+.+|.+|...
T Consensus 278 ~v~~~A~~aL~nLa~~~~--~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNP--KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHHHTSSCH--HHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCH--HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 999999999999997543 5789999999999999999874 899999999999999985
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=282.23 Aligned_cols=275 Identities=15% Similarity=0.112 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhcc
Q 014913 113 IKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMG 192 (416)
Q Consensus 113 ~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~ 192 (416)
.+|+++|.+++.+ +++|+.|.+.|++++|+.+|..+... .|.+ .+..++.++++|+++|.||+.+++..+..+..
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~--~~~~--~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~ 240 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEM--YGLT--NDHYSITLRRYAGMALTNLTFGDVANKATLCS 240 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHH--STTC--CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcc--cccc--cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 4899999999665 78999999999999999999642100 0000 00013678999999999999988767766643
Q ss_pred ccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc-cCchhhHhhhhhHHHHHHHHh-ccCCChHHHHHHHHHHHHhCC-C
Q 014913 193 RNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV-AEPMQLISLRQELFVEVIQVL-HDHISQQASKSALEVLVNICP-W 269 (416)
Q Consensus 193 ~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~nLs~-~ 269 (416)
..| +|+.|+.+|++++.++++.|+++|.+|+.. ++.++..+.+.|+||+||.+| +++ +..+++.|+.+|+||+. .
T Consensus 241 ~~G-aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~ 318 (458)
T 3nmz_A 241 MKG-CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHC 318 (458)
T ss_dssp CHH-HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHC
T ss_pred cCC-cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC
Confidence 353 799999999999999999999999999974 333444455679999999975 556 88999999999999999 6
Q ss_pred CcchHHHH-hhCcHHHHHHHhhcccchh---hhHHHHHHHHHHHcC----ChhhHHHHHhcCCchHHHHHHHHhcChhhh
Q 014913 270 GRNRIKGV-EAGAVSILIDLLLDSSLER---RASEMILTVLDLLCQ----CAEGRAELLKHGAGLAIVSKKILRVSQVAS 341 (416)
Q Consensus 270 ~~n~~~i~-~~G~v~~Lv~lL~~~~~~~---~~~~~a~~~L~~La~----~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~ 341 (416)
++|+..++ ..|+||+|+++|.... +. ++++.|+++|+||+. +++++..+++ .|+++.|+++|.+++..++
T Consensus 319 ~~nk~~I~~~~Gal~~Lv~LL~~~~-~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~ 396 (458)
T 3nmz_A 319 TENKADICAVDGALAFLVGTLTYRS-QTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIV 396 (458)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCC-SSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCC-CcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHH
Confidence 68999998 7999999999998762 22 489999999999995 7888888887 7999999998888888999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 342 ERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 342 ~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+.|+++|++|+..+ ++.+..+++.|+++.|+.+|++. +++.++.|+.+|.+|..+
T Consensus 397 ~~A~~aL~nLa~~~--~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 397 SNACGTLWNLSARN--PKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHHSSC--HHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcC
Confidence 99999999999754 35789999999999999999874 899999999999999884
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.98 E-value=3.7e-31 Score=265.40 Aligned_cols=282 Identities=13% Similarity=0.108 Sum_probs=230.1
Q ss_pred HHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.++.++..|. ++++.|..|+.+|++++.+++.+|..|++.|+||.||++|+++ ++.+++.|+++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~---------------~~~~~~~A~~a 67 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP---------------NQNVQQAAAGA 67 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS---------------CHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC---------------CHHHHHHHHHH
Confidence 4788999997 4679999999999999988887899999999999999999987 58999999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc------
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQ-RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH------ 248 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~------ 248 (416)
|.||+.+.+.++..+.+ .| +|+.|+++|+ +++.++++.|+++|++|+..++++..+ .+ |++|+|+++|.
T Consensus 68 L~nLa~~~~~~k~~i~~-~G-~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i-~~-g~i~~Lv~ll~~~~s~~ 143 (457)
T 1xm9_A 68 LRNLVFRSTTNKLETRR-QN-GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IA-DALPVLADRVIIPFSGW 143 (457)
T ss_dssp HHHHHSSCHHHHHHHHH-TT-CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH-HH-HHHHHHHHHTTHHHHTC
T ss_pred HHHHhcCCHHHHHHHHH-cC-CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH-Hh-ccHHHHHHHHhcccccc
Confidence 99999874455565553 65 9999999999 889999999999999999886555545 46 99999999993
Q ss_pred --cC-------CChHHHHHHHHHHHHhCCCCcchHHHHhh-CcHHHHHHHhhcc----cchhhhHHHHHHHHHHHcCChh
Q 014913 249 --DH-------ISQQASKSALEVLVNICPWGRNRIKGVEA-GAVSILIDLLLDS----SLERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 249 --~~-------~~~~~~~~A~~aL~nLs~~~~n~~~i~~~-G~v~~Lv~lL~~~----~~~~~~~~~a~~~L~~La~~~~ 314 (416)
++ .+..+.++|+++|+|||.+++++..+++. |+|++|+.+|.++ ..+..+++.++++|++|+...+
T Consensus 144 ~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~ 223 (457)
T 1xm9_A 144 CDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD 223 (457)
T ss_dssp C---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHH
T ss_pred ccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchh
Confidence 22 13456669999999999987899999997 9999999999862 0156789999999999974211
Q ss_pred ---------------------------------------------------hHHHHHhcCCchHHHHHHHHhc-ChhhhH
Q 014913 315 ---------------------------------------------------GRAELLKHGAGLAIVSKKILRV-SQVASE 342 (416)
Q Consensus 315 ---------------------------------------------------~~~~i~~~~~~v~~Lv~~l~~~-~~~~~~ 342 (416)
+.+.+ -+.++++.|+.+|.+. ++..++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~l~~L~~lL~~~~~~~~~e 302 (457)
T 1xm9_A 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL-YHSDAIRTYLNLMGKSKKDATLE 302 (457)
T ss_dssp HHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG-GSHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH-hCcchHHHHHHHHhhcCCHHHHH
Confidence 11112 2357788999977765 468999
Q ss_pred HHHHHHHHHhcCCCCh--HH-HHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 343 RAVRILLSISKFSATN--SV-LQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 343 ~a~~~L~~L~~~~~~~--~~-~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
.|+++|++|+.+.... .+ +..+.+.|+++.|+.+|+++ +++.++.|+++|++++++
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC
Confidence 9999999999876542 23 23344689999999999875 899999999999999874
No 4
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=2.1e-30 Score=263.10 Aligned_cols=288 Identities=11% Similarity=0.048 Sum_probs=231.6
Q ss_pred CChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 93 INKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 93 ~~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
.....|+.+|..|.+ +++.|.+|+.+|++++..++.+|..|++.|+||+||++|.++ +..+++.
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~---------------~~~vq~~ 109 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP---------------KKEVHLG 109 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS---------------SHHHHHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC---------------CHHHHHH
Confidence 445679999999974 568999999999999998889999999999999999999988 5899999
Q ss_pred HHHHHHhcCCC-hhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc-
Q 014913 172 ALSILCNLKIS-ELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH- 248 (416)
Q Consensus 172 A~~~L~~l~~~-~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~- 248 (416)
|+++|.||+.+ ++.++..|.+ .| +|+.||.+|++ ++.+++++|+++|++|+..++++..|+ . |+||+|++++.
T Consensus 110 Aa~AL~nLa~~~~~~nk~~I~~-~G-aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~-~-~alp~Lv~LL~~ 185 (584)
T 3l6x_A 110 ACGALKNISFGRDQDNKIAIKN-CD-GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-D-HALHALTDEVII 185 (584)
T ss_dssp HHHHHHHHTSSSCHHHHHHHHH-TT-HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH-H-HTHHHHHHHTHH
T ss_pred HHHHHHHHHccCCHHHHHHHHH-cC-CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH-h-ccHHHHHHHHhc
Confidence 99999999985 2445555553 75 99999999997 588999999999999999877777766 4 67999999872
Q ss_pred ----------------cCCChHHHHHHHHHHHHhCCCCc-chHHHHh-hCcHHHHHHHhhcc----cchhhhHHHHHHHH
Q 014913 249 ----------------DHISQQASKSALEVLVNICPWGR-NRIKGVE-AGAVSILIDLLLDS----SLERRASEMILTVL 306 (416)
Q Consensus 249 ----------------~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~-~G~v~~Lv~lL~~~----~~~~~~~~~a~~~L 306 (416)
+..+..++++|+++|+||+.+.+ +|..|++ .|+|++|+.+|.+. ..+...++.|+++|
T Consensus 186 p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL 265 (584)
T 3l6x_A 186 PHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265 (584)
T ss_dssp HHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHH
Confidence 11146899999999999998875 5999998 57788999999752 11567899999999
Q ss_pred HHHcCChhhHH-------H---------HHhc---------CCchHHHHHHHHhc-ChhhhHHHHHHHHHHhcCCCC--h
Q 014913 307 DLLCQCAEGRA-------E---------LLKH---------GAGLAIVSKKILRV-SQVASERAVRILLSISKFSAT--N 358 (416)
Q Consensus 307 ~~La~~~~~~~-------~---------i~~~---------~~~v~~Lv~~l~~~-~~~~~~~a~~~L~~L~~~~~~--~ 358 (416)
+||+...+... . ...+ .++++.|+.+|... +..+++.|+++|++||.+... .
T Consensus 266 ~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~ 345 (584)
T 3l6x_A 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGR 345 (584)
T ss_dssp HHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred HHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccH
Confidence 99997632110 0 0111 24456778877543 578999999999999986532 1
Q ss_pred HHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 359 SVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 359 ~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
.++..+.+.|+++.|+.+|+++ ++..++.|..+|++|+.+-
T Consensus 346 ~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 346 YIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh
Confidence 2444556789999999999875 8999999999999999853
No 5
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.97 E-value=3.1e-30 Score=256.25 Aligned_cols=297 Identities=15% Similarity=0.140 Sum_probs=234.1
Q ss_pred hHHHHHHHHHHhc--C-----------cHHHHHHHHHHHHHHhcChhhhhHHhhcCcH----------HHHHHHhccCCC
Q 014913 95 KAQITKLLNEAAK--S-----------PQMQIKCLKKLRSIAAENETNKRCLESAGAV----------EFLASFVTNSNA 151 (416)
Q Consensus 95 ~~~i~~lv~~l~~--~-----------~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i----------~~Lv~lL~~~~~ 151 (416)
.+-++.||+.|+. . ++.+.+|+++|.+++...++..+...+.|++ +.+++++.+...
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 3567888999973 1 5999999999999999998888888888988 777888876520
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-----------CCHHHHHHHHHHH
Q 014913 152 MEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-----------GTYESRAYAVLLL 220 (416)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-----------~~~~~~~~a~~~L 220 (416)
..+ ..++....+-...+..|+++|.|++.++++ +..+.+ .| ++++|+.+|.. .+..++.+|+|+|
T Consensus 149 ~~~-~~~~~~~~~~~~~~~qAv~aL~nls~~~e~-R~~i~~-~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 149 GMD-QDKNPMPAPVEHQICPAVCVLMKLSFDEEH-RHAMNE-LG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp SSC-CCSCC--CCCTTTTHHHHHHHHHHTTSHHH-HHHHHH-TT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccc-cccCCccchhhHHHHHHHHHHHHhcCCHHH-HHHHHH-CC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 000 000000000112344999999999988665 455543 64 99999999952 3477899999999
Q ss_pred HHhhcccCchhhHh-hhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC--CcchHHHHhhCcHHHHHHHhhcccchhh
Q 014913 221 KSMLEVAEPMQLIS-LRQELFVEVIQVLHDHISQQASKSALEVLVNICPW--GRNRIKGVEAGAVSILIDLLLDSSLERR 297 (416)
Q Consensus 221 ~~l~~~~~~~~~~~-~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~--~~n~~~i~~~G~v~~Lv~lL~~~~~~~~ 297 (416)
.+|+..++..+..+ ...|+||+||.+|+++ +.++++.|+++|+||+.. ++||..+++.|+||+|+++|.... +..
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~ 302 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KES 302 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHH
Confidence 99998765444433 4557799999999998 999999999999999985 358999999999999999864432 678
Q ss_pred hHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhcCh----hhhHHHHHHHHHHhcC-CCChHHHHHHHhcChHH
Q 014913 298 ASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRVSQ----VASERAVRILLSISKF-SATNSVLQEMLQIGVVA 371 (416)
Q Consensus 298 ~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~----~~~~~a~~~L~~L~~~-~~~~~~~~~i~~~G~v~ 371 (416)
+++.|+.+|+||+. +++++..++...|+++.|+++|...++ ..++.|+++|++|+.+ ..+++.++.+++.|+++
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~ 382 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH
Confidence 99999999999999 888999998558999999997776554 3899999999999962 11234788999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 372 KLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 372 ~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.|+.+|++ ++...++.|+.+|.++..
T Consensus 383 ~Lv~LL~~-~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 383 TLLQHLKS-HSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHSSC-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcC-CChHHHHHHHHHHHHHHc
Confidence 99999987 488999999999999974
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.97 E-value=1.4e-29 Score=265.12 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=240.0
Q ss_pred ChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcCh-----------------------------hhh---hHHhhcCcHH
Q 014913 94 NKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENE-----------------------------TNK---RCLESAGAVE 140 (416)
Q Consensus 94 ~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~-----------------------------~~~---~~i~~~G~i~ 140 (416)
+.+.++.|+..|++ ++..+..|++.|.+++...+ .++ +.|+++|+||
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 35778999999974 56899999999999998542 233 6788999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHH
Q 014913 141 FLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLL 220 (416)
Q Consensus 141 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L 220 (416)
.|+.+|+++ ++.+++.|+++|.|++.+.++ +..+.+ .| ++++|+.+|++++...++.|+++|
T Consensus 499 ~LV~LL~s~---------------s~~vqe~Aa~aL~NLA~d~~~-r~~Vv~-~G-aip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 499 ALCALAKTE---------------SHNSQELIARVLNAVCGLKEL-RGKVVQ-EG-GVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHTCC---------------CHHHHHHHHHHHHHHHTSHHH-HHHHHH-TT-HHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHcCC---------------CHHHHHHHHHHHHHHcCCHHH-HHHHHH-CC-CHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999987 589999999999999987665 444443 64 999999999999999999999999
Q ss_pred HHhhcccCchhhHh--hhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhh
Q 014913 221 KSMLEVAEPMQLIS--LRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERR 297 (416)
Q Consensus 221 ~~l~~~~~~~~~~~--~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~ 297 (416)
.+|+...+....+. ...|+||+|+.+|.++.+...+..|+++|.||+..+ +++..++++|++|.|+.+|.+. ++.
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~ 638 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLY 638 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTT
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHH
Confidence 99997644433221 124799999999986634455678999999999876 5899999999999999999988 889
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHh-cChHHHHHHH
Q 014913 298 ASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQ-IGVVAKLCLV 376 (416)
Q Consensus 298 ~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~-~G~v~~L~~l 376 (416)
+++.|+.+|+||+.+++.+..++...|+++.|+.++...+...++.|+++|++|+.++. ...+.+++ .|+++.|+.+
T Consensus 639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~--~~~~~ii~~~g~I~~Lv~L 716 (810)
T 3now_A 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV--KCCEKILAIASWLDILHTL 716 (810)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH--HHHHHHHTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999998888546899999997777677999999999999998643 36777888 9999999999
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHh
Q 014913 377 LQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 377 l~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
|+++ +.+.|+.|.++|.++..+
T Consensus 717 L~s~-d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 717 IANP-SPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HTCS-SHHHHHHHHHHHHHHHTT
T ss_pred HCCC-CHHHHHHHHHHHHHHHhC
Confidence 9874 999999999999998763
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=1.6e-29 Score=256.95 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=244.2
Q ss_pred ChHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 94 NKAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 94 ~~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+.+.|+.||+.|+. ++..|.+|+++|.+++..+++++..|+++|+||.|+.+|.++ +.++++.
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~---------------~~~v~e~ 162 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP---------------HAHISEQ 162 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC---------------CHHHHHH
Confidence 34789999999962 468999999999999999999999999999999999999987 5899999
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCC-----HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHH
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGT-----YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQV 246 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 246 (416)
|+++|.||+.+.+..+..+.+ .| +++.|+.+|.+.+ ...+..++++|.+++........+....|++|.|+++
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~-~G-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 240 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIK-HG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 240 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TT-CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH-cC-ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHH
Confidence 999999999887777777763 64 9999999998653 5678899999999998766666665556899999999
Q ss_pred hccCCChHHHHHHHHHHHHhCCCCcc-hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHHhcCC
Q 014913 247 LHDHISQQASKSALEVLVNICPWGRN-RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELLKHGA 324 (416)
Q Consensus 247 L~~~~~~~~~~~A~~aL~nLs~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~~~ 324 (416)
|.++ +.+++..|+++|.+|+.+.++ ...+++.|+++.|+.+|.+. +..++..++.+|.+|+...+ .+..++. .|
T Consensus 241 L~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g 316 (510)
T 3ul1_B 241 LHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVID-AG 316 (510)
T ss_dssp TTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TT
T ss_pred HhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHHHHHhhcCCHHHHHHHhh-cc
Confidence 9999 999999999999999988764 45667899999999999988 88999999999999987554 4555665 89
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+++.|+.+|.+.+..+++.|+++|.+|+.+.. ..+..+.+.|+++.|+.+|++. +...|+.|+++|.++..
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS 387 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 99999998877778999999999999998765 4788889999999999999874 89999999999998876
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=3.2e-30 Score=248.81 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=207.5
Q ss_pred hHHHHHHHHHHhc------------CcHHHHHHHHHHHHHHhcChhhhhHHhhc-CcHHHHHHHhccCCCCCCCCCCCCC
Q 014913 95 KAQITKLLNEAAK------------SPQMQIKCLKKLRSIAAENETNKRCLESA-GAVEFLASFVTNSNAMEESPEGFDN 161 (416)
Q Consensus 95 ~~~i~~lv~~l~~------------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~ 161 (416)
.+.++.|+..|.. ++..|.+|+++|++++..++.+|..|... |+||.||++|.++
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~------------ 139 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE------------ 139 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS------------
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC------------
Confidence 3677888888841 25789999999999999888899988754 6699999999987
Q ss_pred CCCCcchHHHHHHHHHhcCCC-hhhhhhhhccccCCccHHHHHHH-hcCCHHHHHHHHHHHHHhhc-ccCchhhHhhhhh
Q 014913 162 LHESSRPVDEALSILCNLKIS-ELGLKSLVMGRNGTFVDSLTQIM-QRGTYESRAYAVLLLKSMLE-VAEPMQLISLRQE 238 (416)
Q Consensus 162 ~~~~~~~~~~A~~~L~~l~~~-~~~~~~~i~~~~G~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g 238 (416)
++++++.|+++|.||+.+ ++.++..+.+ .| +|+.|+++| ++++.++++.|+.+|++|+. .++++..+....|
T Consensus 140 ---~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G-~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~G 214 (354)
T 3nmw_A 140 ---SEDLQQVIASVLRNLSWRADVNSKKTLRE-VG-SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214 (354)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTT
T ss_pred ---CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CC-CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcC
Confidence 589999999999999985 3445565553 64 999999975 66789999999999999998 4456666664679
Q ss_pred HHHHHHHHhccCCCh----HHHHHHHHHHHHhCC----CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc
Q 014913 239 LFVEVIQVLHDHISQ----QASKSALEVLVNICP----WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~----~~~~~A~~aL~nLs~----~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La 310 (416)
+||+|+++|+++ +. ++++.|+++|+||+. +++++..++++|+||+|+++|.++ +..+++.|+++|+||+
T Consensus 215 ai~~Lv~lL~~~-~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 215 ALAFLVGTLTYR-SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHHHHTTCC-CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhccC-CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC--ChHHHHHHHHHHHHHh
Confidence 999999999976 43 589999999999995 667999999999999999999988 8899999999999999
Q ss_pred C-ChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCC
Q 014913 311 Q-CAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 311 ~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
. +++++..+++ .|+|+.|+++|.+.+...++.|+.+|.+|+.+.++
T Consensus 292 ~~~~~~~~~i~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 292 ARNPKDQEALWD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp SSCHHHHHHHHH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 5 6888888887 89999999988777889999999999999998775
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.97 E-value=8e-29 Score=253.04 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=245.1
Q ss_pred ChHHHHHHHHHHh-c-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 94 NKAQITKLLNEAA-K-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 94 ~~~~i~~lv~~l~-~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+.+.++.|+..|. + ++..+.+|+++|.+++..++.++..+++.|+||.|+.+|.++ +..+++.
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~---------------~~~v~e~ 181 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP---------------HAHISEQ 181 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---------------CHHHHHH
Confidence 3478899999996 2 468999999999999999998999999999999999999988 5899999
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCC-----HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHH
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGT-----YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQV 246 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 246 (416)
|+++|.||+.+.+..+..+.+ .| +++.|+.+|..++ ...+..++++|.+++.+......+....|++|.|+.+
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~-~g-~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L 259 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIK-HG-AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRL 259 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TT-CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHH-cC-CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHH
Confidence 999999999887667777663 64 9999999998643 5678899999999998766666555556899999999
Q ss_pred hccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHHhcCC
Q 014913 247 LHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELLKHGA 324 (416)
Q Consensus 247 L~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~~~ 324 (416)
|.++ +.+++..|+++|.+|+.+.+ ....+++.|++|.|+.+|.+. +..++..++.+|.+|+...+ .+..++. .|
T Consensus 260 L~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g 335 (529)
T 3tpo_A 260 LHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVID-AG 335 (529)
T ss_dssp TTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TT
T ss_pred hcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccchHHHHHHhh-cc
Confidence 9999 99999999999999998776 455677899999999999988 88999999999999987544 5556666 89
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+++.|+.+|.+.++.+++.|+++|.+|+.+.. ..+..+.+.|+++.|+.+|++. +..+|+.|+++|.++..+
T Consensus 336 ~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 336 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp GGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH--HHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence 99999998877788999999999999998765 4788889999999999999875 889999999999988753
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.97 E-value=2.9e-29 Score=255.15 Aligned_cols=282 Identities=12% Similarity=0.100 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcCh-hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENE-TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
..++.+|+.+.+ +++.|.+|+..+|++..... .-.+.|+++|+||.||++|++.. ++.+|.+|+
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~--------------~~~lq~~Aa 122 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD--------------CSPIQFESA 122 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT--------------CHHHHHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC--------------CHHHHHHHH
Confidence 358899999974 57999999999999875422 24678999999999999998762 578999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC--
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI-- 251 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-- 251 (416)
++|.|++.++++.++.+.+ .| +|+.|+.+|++++.++++.|+|+|++|+.+....+..+...|++++|+.+|....
T Consensus 123 ~aL~nias~~~e~~~~vv~-~G-aIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~ 200 (510)
T 3ul1_B 123 WALTNIASGTSEQTKAVVD-GG-AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLS 200 (510)
T ss_dssp HHHHHHHTSCHHHHHHHHH-TT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGG
T ss_pred HHHHHHhcCCHHHHHHHHH-CC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccch
Confidence 9999999877666666653 64 9999999999999999999999999999876666667777799999999998651
Q ss_pred --ChHHHHHHHHHHHHhCCCCcchHHH-HhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHH
Q 014913 252 --SQQASKSALEVLVNICPWGRNRIKG-VEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAI 328 (416)
Q Consensus 252 --~~~~~~~A~~aL~nLs~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~ 328 (416)
....++.++++|.|++.+..+...+ ...|++|.|+.+|.+. +++++..|+++|.+|+....++..++...|+++.
T Consensus 201 ~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~ 278 (510)
T 3ul1_B 201 TLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQ 278 (510)
T ss_dssp GSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchh
Confidence 2356789999999999877654444 3478999999999988 8899999999999999987776666655899999
Q ss_pred HHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 329 VSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 329 Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
|+++|.+.+..++..++.+|++|+.++. .....+++.|+++.|+.+|++. ++..|+.|+++|.++..
T Consensus 279 Lv~lL~~~~~~v~~~al~aL~nl~~~~~--~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 279 LVKLLGATELPIVTPALRAIGNIVTGTD--EQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred hhhhhcCCChhhhhHHHHHHHHhhcCCH--HHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 9998888888999999999999998765 4788889999999999999874 88999999999999876
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=2.6e-29 Score=251.98 Aligned_cols=278 Identities=12% Similarity=0.080 Sum_probs=225.6
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhc-cCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVT-NSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.++.|+..|.+ ++..+..|+++|++++.+++++|..|+++|+||.|+++|. ++ ++++++.|
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~---------------~~~~~~~a 107 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG---------------NAEIQKQL 107 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC---------------CHHHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC---------------CHHHHHHH
Confidence 4678999999974 5689999999999999988899999999999999999998 54 58999999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHh--------cC--------CHHHHHHHHHHHHHhhcccCchhhHhhh
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ--------RG--------TYESRAYAVLLLKSMLEVAEPMQLISLR 236 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 236 (416)
+++|.||+.+++ .+..+. . | +++.|+.+|. ++ +.+++.+|+|+|++|+...+++ ..+.+
T Consensus 108 ~~aL~nLa~~~~-~~~~i~-~-g-~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~-~~i~~ 182 (457)
T 1xm9_A 108 TGLLWNLSSTDE-LKEELI-A-D-ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR-QTMRN 182 (457)
T ss_dssp HHHHHHHHTSSS-THHHHH-H-H-HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHH-HHHTT
T ss_pred HHHHHHHhcCHH-hHHHHH-h-c-cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHH-HHHHH
Confidence 999999999854 556565 3 5 9999999993 33 3456669999999999874444 44455
Q ss_pred h-hHHHHHHHHhccC-----------------------------------------------------------------
Q 014913 237 Q-ELFVEVIQVLHDH----------------------------------------------------------------- 250 (416)
Q Consensus 237 ~-g~i~~Lv~lL~~~----------------------------------------------------------------- 250 (416)
. |++++|+.+|+++
T Consensus 183 ~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (457)
T 1xm9_A 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNY 262 (457)
T ss_dssp STTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-------------------------
T ss_pred cCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccc
Confidence 4 8999999888631
Q ss_pred ---------------------------------CChHHHHHHHHHHHHhCCCCcc------hHHHHhhCcHHHHHHHhhc
Q 014913 251 ---------------------------------ISQQASKSALEVLVNICPWGRN------RIKGVEAGAVSILIDLLLD 291 (416)
Q Consensus 251 ---------------------------------~~~~~~~~A~~aL~nLs~~~~n------~~~i~~~G~v~~Lv~lL~~ 291 (416)
.++..++.|+|+|+||+..... +..+.++|++|.|+++|.+
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~ 342 (457)
T 1xm9_A 263 DCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342 (457)
T ss_dssp ---CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC
T ss_pred cCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC
Confidence 0245667789999999876542 2233468999999999999
Q ss_pred ccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcCh------hhhHHHHHHHHHHhcCCCChHHHHHHH
Q 014913 292 SSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQ------VASERAVRILLSISKFSATNSVLQEML 365 (416)
Q Consensus 292 ~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~i~ 365 (416)
+ +.+++..|+++|.||+.+.+++..+.. +++++|+++|...+. ++...++.+|.++..++. +....+.
T Consensus 343 ~--~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~--~~~~~i~ 416 (457)
T 1xm9_A 343 G--NSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP--QLAKQYF 416 (457)
T ss_dssp S--CHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT--HHHHHHC
T ss_pred C--CHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH--HHHHHHH
Confidence 8 899999999999999999888877654 799999997765432 467788899999987765 4788889
Q ss_pred hcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 366 QIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 366 ~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+.|++++|+.++.++.+++.+++|..+|.++..
T Consensus 417 ~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 417 SSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 999999999999874378999999999886654
No 12
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=6.8e-29 Score=252.03 Aligned_cols=281 Identities=14% Similarity=0.093 Sum_probs=224.4
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhc-ChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAE-NETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.|+.||+.|.+ +++.|.+|+++|++|+.. +++||..|+++|+||+||++|.+.. +.++++.|
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~--------------~~~~~e~a 154 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR--------------DMDLTEVI 154 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC--------------SHHHHHHH
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC--------------CHHHHHHH
Confidence 4679999999974 579999999999999985 6889999999999999999999852 47899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHh------------------cCCHHHHHHHHHHHHHhhcccCc-hhhH
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ------------------RGTYESRAYAVLLLKSMLEVAEP-MQLI 233 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~l~~~~~~-~~~~ 233 (416)
+.+|.+|+.++++...++. ++++.|+++|. ..+.+++++|+++|.||+..+++ +..+
T Consensus 155 a~aL~nLS~~~~~k~~I~~----~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i 230 (584)
T 3l6x_A 155 TGTLWNLSSHDSIKMEIVD----HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKL 230 (584)
T ss_dssp HHHHHHHTTSGGGHHHHHH----HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhCCchhhHHHHh----ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999997765545543 38999999872 12578999999999999976544 4444
Q ss_pred hhhhhHHHHHHHHhcc----------------------------------------------------------------
Q 014913 234 SLRQELFVEVIQVLHD---------------------------------------------------------------- 249 (416)
Q Consensus 234 ~~~~g~i~~Lv~lL~~---------------------------------------------------------------- 249 (416)
+...|+|+.||.+|++
T Consensus 231 ~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v 310 (584)
T 3l6x_A 231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVV 310 (584)
T ss_dssp HHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHH
T ss_pred HHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHH
Confidence 4444556666665542
Q ss_pred ---------CCChHHHHHHHHHHHHhCCCC-----cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh
Q 014913 250 ---------HISQQASKSALEVLVNICPWG-----RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 250 ---------~~~~~~~~~A~~aL~nLs~~~-----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~ 315 (416)
..+..++++|++||+||+.+. .++..+.+.|++|.|++||..+ +..+++.|+++|+||+.+..+
T Consensus 311 ~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~--~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChhH
Confidence 114556677777777776543 1344555689999999999998 889999999999999999988
Q ss_pred HHHHHhcCCchHHHHHHHHhc--------ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcC-CcHHHH
Q 014913 316 RAELLKHGAGLAIVSKKILRV--------SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVD-NSMKTK 386 (416)
Q Consensus 316 ~~~i~~~~~~v~~Lv~~l~~~--------~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~~~k 386 (416)
+..| . .|+++.||++|.+. +..+...|+.+|.||+..+. +.++.+.+.|+|+.|+.++++. .++..+
T Consensus 389 ~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~--~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 389 KELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL--EAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp HHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred HHHH-H-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 8777 4 58999999977655 24567889999999987654 5788999999999999999873 378899
Q ss_pred HHHHHHHHHHHHh
Q 014913 387 DKAREVLKLHARA 399 (416)
Q Consensus 387 ~~A~~ll~~l~~~ 399 (416)
+.|+.+|..|-.|
T Consensus 465 k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 465 RAAALVLQTIWGY 477 (584)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998753
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=7.1e-29 Score=259.86 Aligned_cols=282 Identities=15% Similarity=0.140 Sum_probs=240.2
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.++.|+..|.+ ++..|.+|+++|.+++.+ +++|..|++.|+||+|+.+|.++ ++..++.|++
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~---------------~~~~k~~Aa~ 558 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEG---------------TEKGKRHATQ 558 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSS---------------CHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccC---------------CHHHHHHHHH
Confidence 567889999873 679999999999999975 56999999999999999999987 4788999999
Q ss_pred HHHhcCCChhhhhhhhcc--ccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 175 ILCNLKISELGLKSLVMG--RNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~--~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
+|.+|+.+.+.. ..+.. .. +++++|+.+|.++ +...+..|+++|.||+...+.....+.+.|+++.|+.+|.++
T Consensus 559 AL~nL~~~~~p~-~~~~~~~~~-~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~- 635 (810)
T 3now_A 559 ALARIGITINPE-VSFSGQRSL-DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED- 635 (810)
T ss_dssp HHHHHHHHSCHH-HHTTTHHHH-HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-
T ss_pred HHHHHhcCCChh-hhhcchhhh-cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-
Confidence 999998654322 22110 14 3999999999876 455567899999999987544444455569999999999998
Q ss_pred ChHHHHHHHHHHHHhCCCCcchHHHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHH
Q 014913 252 SQQASKSALEVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIV 329 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~L 329 (416)
+..++++|+++|.||+.+++++..+++ .|+++.|+.++.+. +..+++.|+++|++|+. ++.....++.+.|+++.|
T Consensus 636 ~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~L 713 (810)
T 3now_A 636 HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKILAIASWLDIL 713 (810)
T ss_dssp CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHH
Confidence 899999999999999999999888886 79999999999987 88999999999999998 677777888757999999
Q ss_pred HHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHhc
Q 014913 330 SKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVD--NSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 330 v~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~~k~~A~~ll~~l~~~~ 400 (416)
++++.+.+.+.++.|+++|.|++.++. +....+.+.|++++|..+++.. .+.+..+.|...|..+-++-
T Consensus 714 v~LL~s~d~~vq~~A~~aL~NL~~~s~--e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 714 HTLIANPSPAVQHRGIVIILNMINAGE--EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHTTCH--HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 998888888999999999999998643 5789999999999999999653 36789999999999998853
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=4.3e-28 Score=247.63 Aligned_cols=286 Identities=11% Similarity=0.124 Sum_probs=244.3
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.++.|+..|.+ +++.+..|+++|.+++.+++.+|..+.+.|++++|+.+|...... .....++..+++
T Consensus 162 Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~----------~~~~~~~~~a~~ 231 (529)
T 3tpo_A 162 GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLS----------TLACGYLRNLTW 231 (529)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGG----------GSCHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchh----------HhHHHHHHHHHH
Confidence 567888888863 569999999999999999999999999999999999999876210 012356888999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
+|.+++.+......+.. .. ++++.|+.+|.+++.+++..|+|+|.+++.........+...|+++.|+.+|.++ +..
T Consensus 232 ~L~nl~~~~~~~~~~~~-~~-~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~ 308 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDA-VE-QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELP 308 (529)
T ss_dssp HHHHHHCCCTTCCCHHH-HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHH
T ss_pred HHHHHHhcccchhhHHH-Hh-hHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-Chh
Confidence 99999987655444443 24 4999999999999999999999999999987766666677779999999999998 999
Q ss_pred HHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh-HHHHHhcCCchHHHHHH
Q 014913 255 ASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG-RAELLKHGAGLAIVSKK 332 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~-~~~i~~~~~~v~~Lv~~ 332 (416)
++..|+++|.||+.+.+ ++..+++.|+++.|+.+|.++ ++.+++.|+++|.||+.+... +..+.. .|+++.|+.+
T Consensus 309 v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~l 385 (529)
T 3tpo_A 309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGV 385 (529)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHH
Confidence 99999999999987664 778889999999999999988 889999999999999986555 445555 8999999998
Q ss_pred HHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 333 ILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 333 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+.+.+..++..|+++|.|++.+.. .+....+++.|++++|+.+|++. +++.+..+...|.++-++
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 888888999999999999998654 35677889999999999999875 888999998888887664
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=5.5e-27 Score=239.18 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=241.1
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcCh-hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENE-TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.++.++..|.+ +++.+..|+..|++++.... ..+..+++.|+||.|+.+|.+.+ ++.++..|
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~--------------~~~v~~~A 138 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED--------------FPQLQFEA 138 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT--------------CHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC--------------CHHHHHHH
Confidence 3568999999974 57999999999999987554 57888999999999999998872 37899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+++|.+++.+.+..+..+.+ .| +++.|+.+|.+++.++++.|+++|.+|+......+..+...|++++|+.+|....+
T Consensus 139 ~~~L~~l~~~~~~~~~~~~~-~g-~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~ 216 (528)
T 4b8j_A 139 AWALTNIASGTSENTKVVID-HG-AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTK 216 (528)
T ss_dssp HHHHHHHHTSCHHHHHHHHH-TT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHh-CC-cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCC
Confidence 99999999875555555553 64 99999999999999999999999999997755555555666999999999943338
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHH
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~ 332 (416)
..++..|+++|.+|+....+.......|++|.|+.+|.+. ++.++..|+++|.+|+.....+...+.+.|+++.|+++
T Consensus 217 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l 294 (528)
T 4b8j_A 217 LSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (528)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence 9999999999999998866555566789999999999988 89999999999999998776665444448999999998
Q ss_pred HHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 333 ILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 333 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
|.+.+..++..|+.+|.+|+.+.. ...+.+.+.|+++.|+.+|++..++..++.|.++|.++..
T Consensus 295 L~~~~~~v~~~a~~~L~nl~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 295 LLHPSPSVLIPALRTVGNIVTGDD--AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCChhHHHHHHHHHHHHHcCCH--HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 887788999999999999998664 4778888999999999999864478999999999999986
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.95 E-value=1.8e-26 Score=235.29 Aligned_cols=279 Identities=15% Similarity=0.196 Sum_probs=242.6
Q ss_pred HHHHHHHHHHhc-C-cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAAK-S-PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~~-~-~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+.++.|+..|.+ + +..|..|+++|.+++.++++++..+++.|+||.|+.+|.++ ++.+++.|+
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---------------~~~v~~~a~ 181 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS---------------SDDVREQAV 181 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC---------------CHHHHHHHH
Confidence 568889999973 3 79999999999999999889999999999999999999987 589999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHH-hcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIM-QRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
++|.+++.+.+..+..+.+ .| +++.|+.+| .+.+..++..|+++|.+|+........... .|+++.|+.+|.++ +
T Consensus 182 ~aL~~l~~~~~~~~~~i~~-~g-~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~-~ 257 (528)
T 4b8j_A 182 WALGNVAGDSPKCRDLVLA-NG-ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN-D 257 (528)
T ss_dssp HHHHHHHHTCHHHHHHHHH-TT-CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC-C
T ss_pred HHHHHHhCCChhhHHHHHH-CC-cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC-C
Confidence 9999999876665666653 54 999999999 567999999999999999987544444443 59999999999998 9
Q ss_pred hHHHHHHHHHHHHhCCCCcch-HHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHH
Q 014913 253 QQASKSALEVLVNICPWGRNR-IKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVS 330 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv 330 (416)
..++..|+++|.+|+...+++ ..+++.|+++.|+.+|.+. ++.+++.|+.+|.+|+.. +.....++. .|+++.|+
T Consensus 258 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~ 334 (528)
T 4b8j_A 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLL 334 (528)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHH
Confidence 999999999999999877654 5778899999999999988 789999999999999985 444555665 89999999
Q ss_pred HHHHhc-ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 331 KKILRV-SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 331 ~~l~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
.+|.+. +..++..|+++|.+|+.+.. .....+.+.|+++.|+.+|++. ++..|+.|..+|.++...
T Consensus 335 ~lL~~~~~~~v~~~A~~~L~nl~~~~~--~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 335 SLLTQNLKKSIKKEACWTISNITAGNK--DQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHCCCH--HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 988877 78999999999999998643 4677888999999999999875 899999999999999875
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=6.8e-27 Score=214.44 Aligned_cols=242 Identities=17% Similarity=0.193 Sum_probs=211.2
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
|+||.|+++|.++ +++++..|+++|.+++...+..+..+.+ .| +++.|+++|++++.+++..|
T Consensus 2 ~~i~~L~~~L~~~---------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g-~i~~L~~ll~~~~~~v~~~a 64 (252)
T 4hxt_A 2 NDVEKLVKLLTST---------------DSETQKEAARDLAEIASGPASAIKAIVD-AG-GVEVLVKLLTSTDSEVQKEA 64 (252)
T ss_dssp CHHHHHHHHTTCS---------------CHHHHHHHHHHHHHHHTSCHHHHHHHHH-TT-HHHHHHHHTTCSCHHHHHHH
T ss_pred CcHHHHHHHHcCC---------------CHHHHHHHHHHHHHHhcCCcHHHHHHHH-CC-CHHHHHHHHhCCCHHHHHHH
Confidence 7899999999987 5889999999999999877644454442 64 99999999999999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhcccch
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLDSSLE 295 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~ 295 (416)
+++|.+++...+..+..+.+.|+++.|+.+|+++ +.+++..|+++|.||+. .++++..+++.|+++.|+++|.+. +
T Consensus 65 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~ 141 (252)
T 4hxt_A 65 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--D 141 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--C
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--C
Confidence 9999999987454555556669999999999998 99999999999999995 556899999999999999999988 8
Q ss_pred hhhHHHHHHHHHHHcCChhh-HHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 296 RRASEMILTVLDLLCQCAEG-RAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 296 ~~~~~~a~~~L~~La~~~~~-~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
+.++..++.+|.+|+...+. +..+.. .|+++.|++++.+.++..+..|+.+|.+|+.++. ..+..+.+.|+++.|+
T Consensus 142 ~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~i~~L~ 218 (252)
T 4hxt_A 142 SEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPT--SAIKAIVDAGGVEVLQ 218 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH--HHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHH
Confidence 89999999999999985444 566666 8999999998887788999999999999998543 5788899999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhccC
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHARAWKN 402 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~~~~~~ 402 (416)
.+++++ ++..|+.|..+|.++..+...
T Consensus 219 ~ll~~~-~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 219 KLLTST-DSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HGGGCS-CHHHHHHHHHHHHHHHHTCBC
T ss_pred HHHCCC-cHHHHHHHHHHHHHHHcCCCc
Confidence 999874 889999999999999996543
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.4e-27 Score=218.16 Aligned_cols=238 Identities=17% Similarity=0.210 Sum_probs=206.4
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
...+.++..|.+ +++.+..|+++|+++...++.++..+.+.|+||.|+++|.+. ++.++..|++
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~---------------~~~v~~~a~~ 76 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP---------------NEQILQEALW 76 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS---------------CHHHHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC---------------CHHHHHHHHH
Confidence 346788888874 679999999999887776777999999999999999999987 5889999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
+|.+++.+.+..+..+.+ .| +++.|+.+|++++.++++.|+++|.+|+...+.+...+...|+++.|+.+|+++ +..
T Consensus 77 ~L~~l~~~~~~~~~~i~~-~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~ 153 (252)
T 4db8_A 77 ALSNIASGGNEQIQAVID-AG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQ 153 (252)
T ss_dssp HHHHHTTSCHHHHHHHHH-TT-HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHH
T ss_pred HHHHHhcCCHHHHHHHHH-cC-CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHH
Confidence 999999855445555553 64 999999999999999999999999999988776635556679999999999998 999
Q ss_pred HHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHH
Q 014913 255 ASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~ 332 (416)
+++.|+++|.||+... +++..+++.|+++.|+.+|.++ ++.+++.|+.+|.+|+. .++.+..+.+ .|+++.|+++
T Consensus 154 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~l 230 (252)
T 4db8_A 154 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQL 230 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHH
Confidence 9999999999999866 5777888999999999999988 89999999999999996 4556667776 7999999998
Q ss_pred HHhcChhhhHHHHHHHHHHhcC
Q 014913 333 ILRVSQVASERAVRILLSISKF 354 (416)
Q Consensus 333 l~~~~~~~~~~a~~~L~~L~~~ 354 (416)
+.+.++.+++.|+.+|.+|+.+
T Consensus 231 l~~~~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 231 QSHENEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp TTCSSSHHHHTHHHHHHTTC--
T ss_pred hCCCCHHHHHHHHHHHHHHhcC
Confidence 8877889999999999999853
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=1e-26 Score=213.25 Aligned_cols=240 Identities=18% Similarity=0.213 Sum_probs=210.1
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.++.++..|.+ +++.|..|++.|.+++.+++.++..+.+.|+|+.|+++|.++ ++.++..|+++
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---------------~~~v~~~a~~~ 67 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST---------------DSEVQKEAARA 67 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC---------------CHHHHHHHHHH
Confidence 57889999973 578999999999999999888999999999999999999987 58999999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQA 255 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 255 (416)
|.+++.+.+..+..+.+ .| +++.|+.+|++++.+++..|+++|.+|+...+.....+.+.|+++.|+++|+++ ++.+
T Consensus 68 L~~l~~~~~~~~~~~~~-~~-~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~ 144 (252)
T 4hxt_A 68 LANIASGPDEAIKAIVD-AG-GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEV 144 (252)
T ss_dssp HHHHTTSCHHHHHHHHH-TT-HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHH
T ss_pred HHHHHcCChHHHHHHHH-CC-CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHH
Confidence 99999984555555553 64 999999999999999999999999999965444455555669999999999998 9999
Q ss_pred HHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHH
Q 014913 256 SKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKI 333 (416)
Q Consensus 256 ~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l 333 (416)
+..|+++|.||+...+ ++..+++.|+++.|+.+|.++ ++.++..|+.+|.+|+. .++.+..+.. .|+++.|++++
T Consensus 145 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll 221 (252)
T 4hxt_A 145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLL 221 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHH
Confidence 9999999999998665 668899999999999999987 88999999999999998 4555666666 89999999988
Q ss_pred HhcChhhhHHHHHHHHHHhcCCCC
Q 014913 334 LRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 334 ~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
.+.+...++.|+.+|.+|+.....
T Consensus 222 ~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 222 TSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCc
Confidence 877889999999999999987653
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.9e-26 Score=212.18 Aligned_cols=238 Identities=16% Similarity=0.159 Sum_probs=204.1
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
...+.++..|.++ +++++..|+++|.++....+.....+.+ .| +++.|+.+|++++.+++..|
T Consensus 12 ~~~~~~~~~L~s~---------------~~~~~~~a~~~L~~~l~~~~~~~~~~~~-~g-~i~~L~~lL~~~~~~v~~~a 74 (252)
T 4db8_A 12 SELPQMTQQLNSD---------------DMQEQLSATRKFSQILSDGNEQIQAVID-AG-ALPALVQLLSSPNEQILQEA 74 (252)
T ss_dssp CSHHHHHHHHHSS---------------CSSHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHGGGCSCHHHHHHH
T ss_pred chHHHHHHHHcCC---------------CHHHHHHHHHHHHHHHcCCCchHHHHHH-cC-cHHHHHHHHcCCCHHHHHHH
Confidence 5688999999988 5899999999997655434334444442 64 99999999999999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcch-HHHHhhCcHHHHHHHhhcccch
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNR-IKGVEAGAVSILIDLLLDSSLE 295 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~ 295 (416)
+++|.+++...+.....+.+.|+++.|+.+|+++ +..+++.|+++|.||+.+.+++ ..+++.|++|.|+++|.++ +
T Consensus 75 ~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~ 151 (252)
T 4db8_A 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--N 151 (252)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--C
T ss_pred HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--C
Confidence 9999999985554555556669999999999998 9999999999999999999988 8899999999999999988 8
Q ss_pred hhhHHHHHHHHHHHcCCh-hhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 296 RRASEMILTVLDLLCQCA-EGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 296 ~~~~~~a~~~L~~La~~~-~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
..+++.|+++|.+|+... +.+..+.. .|+++.|+++|.+.+...++.|+.+|.+|+..+. ..+..+.+.|+++.|+
T Consensus 152 ~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~ 228 (252)
T 4db8_A 152 EQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLE 228 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCcHHHHH
Confidence 899999999999999854 45556666 7999999998877788999999999999997654 4788889999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+++++ ++..|+.|..+|.++.+
T Consensus 229 ~ll~~~-~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 229 QLQSHE-NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TTTTCS-SSHHHHTHHHHHHTTC-
T ss_pred HHhCCC-CHHHHHHHHHHHHHHhc
Confidence 999875 88999999999988765
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=1.6e-25 Score=228.63 Aligned_cols=279 Identities=11% Similarity=0.110 Sum_probs=240.6
Q ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+.++.|+..|.+ ++..|..|+++|.+++..++.++..+++.|+||.|+.+|.+. ++.+++.|+
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~---------------~~~vr~~A~ 194 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG---------------SVEVKEQAI 194 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC---------------CHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC---------------CHHHHHHHH
Confidence 567888888863 568999999999999998888999999999999999999987 589999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhccc-CchhhHhhhhhHHHHHHHHhccCCC
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVA-EPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
++|.+++.+.+..+..+.. .| +++.|+.+|.+.+.+++..|+++|.+|+... ...... ...|+++.|+.+|.++ +
T Consensus 195 ~aL~~l~~~~~~~~~~~~~-~~-~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~~~~~l~~L~~lL~~~-d 270 (530)
T 1wa5_B 195 WALGNVAGDSTDYRDYVLQ-CN-AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS-VVSQALPTLAKLIYSM-D 270 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TT-CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH-HHGGGHHHHHHHTTCC-C
T ss_pred HHHHHHhCCCccchHHHHH-cC-cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH-HHHhHHHHHHHHHcCC-C
Confidence 9999999876555565553 54 9999999999999999999999999999775 333333 3459999999999998 8
Q ss_pred hHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh-hhHHHHHhcCCchHHHH
Q 014913 253 QQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA-EGRAELLKHGAGLAIVS 330 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~~~~v~~Lv 330 (416)
..++..|+++|.+|+... +....+++.|+++.|+.+|.+. +..+++.|+.+|.+|+... .....+.. .|+++.|+
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~ 347 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALR 347 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHH
Confidence 999999999999999765 4677888899999999999987 8899999999999999754 44555555 79999999
Q ss_pred HHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 331 KKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 331 ~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
.+|.+.+...++.|+++|.+|+.+.. .....+.+.|+++.|+.+|++. ++..|+.|.++|.++...
T Consensus 348 ~lL~~~~~~vr~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 348 LLLSSPKENIKKEACWTISNITAGNT--EQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhc
Confidence 98877778999999999999998654 4677788899999999999864 899999999999999774
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=4.4e-25 Score=219.80 Aligned_cols=279 Identities=14% Similarity=0.170 Sum_probs=238.8
Q ss_pred HHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+.++.|+..|.+ ++..|..|++.|.+++..+++++..+.+.|++|.|+++|.++ ++.+++.|+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---------------~~~vr~~a~ 128 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE---------------FEDVQEQAV 128 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC---------------CHHHHHHHH
Confidence 568888999973 469999999999999998888888899999999999999987 589999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhccc-CchhhHhhhhhHHHHHHHHhccCC
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVA-EPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
++|.+++.+.+..+..+.+ .| +++.|+.+|++ .+.+++..|+++|.+++... ........ .|+++.|+.+++++
T Consensus 129 ~~L~~l~~~~~~~~~~~~~-~~-~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~- 204 (450)
T 2jdq_A 129 WALGNIAGDSTMCRDYVLD-CN-ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS- 204 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TT-CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC-
T ss_pred HHHHHHccCCHHHHHHHHH-CC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC-
Confidence 9999999876555555553 54 99999999996 68999999999999999764 22222223 58999999999998
Q ss_pred ChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHH-HHHhcCCchHHH
Q 014913 252 SQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRA-ELLKHGAGLAIV 329 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~-~i~~~~~~v~~L 329 (416)
+..++..++++|.+|+... +++..+++.|+++.|+.+|.+. +..+++.|+.+|.+|+...+... .+.. .|+++.|
T Consensus 205 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L 281 (450)
T 2jdq_A 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSL 281 (450)
T ss_dssp CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHH
Confidence 9999999999999999865 5777888999999999999987 88999999999999998755544 4555 7999999
Q ss_pred HHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 330 SKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 330 v~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+++|.+.+...++.|+.+|.+|+.+.. ...+.+.+.|+++.|+.+|+++ ++..|+.|..+|.++...
T Consensus 282 ~~ll~~~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 282 LHLLSSPKESIKKEACWTISNITAGNR--AQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 998877778999999999999998654 3677788899999999999874 889999999999999763
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=209.58 Aligned_cols=199 Identities=14% Similarity=0.089 Sum_probs=166.9
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCc--chHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESS--RPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRA 214 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~--~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~ 214 (416)
-.||.||++|.++ ++ .++..|++.|.+++..++.++..|.+ .| +||.||.+|++++.++++
T Consensus 8 ~~i~~lV~lL~s~---------------~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G-~Ip~LV~lL~s~~~~vq~ 70 (233)
T 3tt9_A 8 MTLERAVSMLEAD---------------HMLPSRISAAATFIQHECFQKSEARKRVNQ-LR-GILKLLQLLKVQNEDVQR 70 (233)
T ss_dssp CCHHHHHHTCCSS---------------CCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TT-HHHHHHHGGGCCCHHHHH
T ss_pred ccHHHHHHHhCCC---------------CchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cC-CHHHHHHHHcCCCHHHHH
Confidence 3589999999988 35 78899999999999765555555552 65 999999999999999999
Q ss_pred HHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc-cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhh---
Q 014913 215 YAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH-DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLL--- 290 (416)
Q Consensus 215 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~--- 290 (416)
.|+++|.+|+..++.++..+.+.|+||+||++|+ ++ +.+++++|+.+||||+..+++|..+++. +||+|++++.
T Consensus 71 ~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~ 148 (233)
T 3tt9_A 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPF 148 (233)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccc
Confidence 9999999999854444444556699999999998 46 8999999999999999999999999875 6999999773
Q ss_pred ccc-----------chhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhc------ChhhhHHHHHHHHHHh
Q 014913 291 DSS-----------LERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRV------SQVASERAVRILLSIS 352 (416)
Q Consensus 291 ~~~-----------~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~------~~~~~~~a~~~L~~L~ 352 (416)
++. .+..++++|+++|+||+. ++++|.++++..|+|+.||.++... +++.+|+|+.+|+||+
T Consensus 149 sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs 228 (233)
T 3tt9_A 149 SGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228 (233)
T ss_dssp HCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred cCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Confidence 110 145899999999999987 5689999998778899999988753 4578999999999999
Q ss_pred cC
Q 014913 353 KF 354 (416)
Q Consensus 353 ~~ 354 (416)
..
T Consensus 229 ~~ 230 (233)
T 3tt9_A 229 YQ 230 (233)
T ss_dssp CC
T ss_pred hh
Confidence 75
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.94 E-value=2.9e-25 Score=226.60 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=238.6
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcC-hhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAEN-ETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+.++.++..|.+ +++.|..|+..|++++... ..++..+++.|+||.|+.+|.+.. ++.++..|+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~--------------~~~v~~~A~ 152 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ--------------PEMLQLEAA 152 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS--------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC--------------CHHHHHHHH
Confidence 458899999974 5789999999999997642 346778899999999999998762 488999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
++|.+++.+.+..+..+.+ .| +++.|+.+|++++.++++.|+++|.+|+......+......|++++|+.+|.+. +.
T Consensus 153 ~~L~~l~~~~~~~~~~~~~-~g-~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~ 229 (530)
T 1wa5_B 153 WALTNIASGTSAQTKVVVD-AD-AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KP 229 (530)
T ss_dssp HHHHHHTTSCHHHHHHHHH-TT-CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CH
T ss_pred HHHHHHhCCCHHHHHHHHH-CC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CH
Confidence 9999999876555555542 64 999999999999999999999999999977544455555669999999999987 89
Q ss_pred HHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHH
Q 014913 254 QASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSK 331 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~ 331 (416)
.++..|+++|.+|+.+. .+.......|++|.|+.+|.+. ++.++..|+++|.+|+.. ++....++. .|+++.|++
T Consensus 230 ~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~ 306 (530)
T 1wa5_B 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVE 306 (530)
T ss_dssp HHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHH
Confidence 99999999999999876 5566667789999999999987 889999999999999986 445666666 799999999
Q ss_pred HHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 332 KILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 332 ~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+|.+.+..++..|+.+|.+|+.+.. ...+.+.+.|+++.|+.+|++. ++..|+.|.++|.++..
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTGND--LQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred HHCCCChhhHHHHHHHHHHHHcCCH--HHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 8877778899999999999998764 3677788899999999999875 88999999999999876
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.94 E-value=1.5e-24 Score=215.84 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=238.8
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.++.|+..|.+ ++..|..|+++|.+++.+++.++..+.+.|+++.|+.+|.++. +..++..|++
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--------------~~~v~~~a~~ 172 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN--------------RLTMTRNAVW 172 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC--------------CHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC--------------CHHHHHHHHH
Confidence 567788888863 5799999999999999998889999999999999999998641 5889999999
Q ss_pred HHHhcCCCh-hhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 175 ILCNLKISE-LGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 175 ~L~~l~~~~-~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
+|.+++.+. ......+. . ++++.|+.+|++++.+++..++++|.+++.............|+++.|+.+|+++ +.
T Consensus 173 ~L~~l~~~~~~~~~~~~~--~-~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~ 248 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV--S-PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DY 248 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT--G-GGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CH
T ss_pred HHHHHhCCCCCCCCHHHH--H-HHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-ch
Confidence 999999764 22222222 4 4999999999999999999999999999976444444455569999999999988 99
Q ss_pred HHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHH
Q 014913 254 QASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSK 331 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~ 331 (416)
.++..|+++|.+|+.+.+ .+..+++.|+++.|+.+|.+. ++.++..|+++|.+|+. +++....++. .++++.|++
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ 325 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVID-ANIFPALIS 325 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHH
Confidence 999999999999998776 455678899999999999987 88999999999999997 5556666776 799999999
Q ss_pred HHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 332 KILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 332 ~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+|.+.+..++..|+.+|.+++.+.. ++....+.+.|+++.|+.+++.. ++..++.|..+|..+...
T Consensus 326 ~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 326 ILQTAEFRTRKEAAWAITNATSGGS-AEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888888999999999999997643 24567778899999999999875 889999999999888764
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=1.2e-24 Score=221.34 Aligned_cols=285 Identities=13% Similarity=0.094 Sum_probs=236.2
Q ss_pred hHHHHHHHHHHh-c-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAA-K-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~-~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.++.+++.|. + +++.+..|+..|++++.+. +++..+.+.|+||.|+++|+++ ++.++..|
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~-~~~~~i~~~g~i~~L~~lL~~~---------------~~~v~~~a 121 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP---------------VDSVLFYA 121 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc-hhHHHHHHcCCHHHHHHHHcCC---------------CHHHHHHH
Confidence 367889999996 3 5789999999999998864 4999999999999999999987 58899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+++|.+++.++++.+..+.+ .| +++.|+++|++++.+++..++.+|.+++..++..+..+...|+++.|+.+|+++..
T Consensus 122 ~~~L~~l~~~~~~~~~~i~~-~g-~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~ 199 (529)
T 1jdh_A 122 ITTLHNLLLHQEGAKMAVRL-AG-GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199 (529)
T ss_dssp HHHHHHHHHHCTTHHHHHHH-HT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHhcCCcchHHHHHH-cC-CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence 99999999875555555553 64 99999999999999999999999999997644444445556999999999997745
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc-------------------------------------cch
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS-------------------------------------SLE 295 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~-------------------------------------~~~ 295 (416)
...+..++.+|+||+.+++++..+++.|+++.|+.++.++ ..+
T Consensus 200 ~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~ 279 (529)
T 1jdh_A 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 279 (529)
T ss_dssp HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC
Confidence 6777788999999999999999999988887777666432 015
Q ss_pred hhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHHHHHhcC--hhhhHHHHHHHHHHhcCCCC-hHHHHHHHhcChHH
Q 014913 296 RRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSKKILRVS--QVASERAVRILLSISKFSAT-NSVLQEMLQIGVVA 371 (416)
Q Consensus 296 ~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~~l~~~~--~~~~~~a~~~L~~L~~~~~~-~~~~~~i~~~G~v~ 371 (416)
+++++.|+++|.+|+.. ++++..+.. .|+++.|+++|.+.+ ...++.|+.+|++|+.++.+ +..+..+.+.|+++
T Consensus 280 ~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~ 358 (529)
T 1jdh_A 280 INVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 358 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChh
Confidence 67888889999999875 457777777 799999999887643 58999999999999987654 34677889999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 372 KLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 372 ~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.|+.+|+++.++..++.|.++|.++..
T Consensus 359 ~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 359 VVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccccchHHHHHHHHHHHHHhc
Confidence 999999876456889999999998875
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=226.40 Aligned_cols=283 Identities=12% Similarity=0.144 Sum_probs=236.2
Q ss_pred CChHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 93 INKAQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESA-GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 93 ~~~~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
...+.++.|+..|. .++..|..|+..|.+++.+.+ ++..+... |+++.|+++|.++. +++++.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~--------------~~~~~~ 75 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN--------------DVETAR 75 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCC--------------CHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCC--------------CHHHHH
Confidence 44567899999997 467999999999999999875 77777764 99999999998752 588999
Q ss_pred HHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC
Q 014913 171 EALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH 250 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 250 (416)
.|+.+|.+|+.+.+....++. .| +++.|+++|++++..++..|+++|.+|+...+.....+.+.|+++.|+.+|+++
T Consensus 76 ~A~~~L~~Ls~~~~~~~~i~~--~g-~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 76 CTAGTLHNLSHHREGLLAIFK--SG-GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHHHHTTSHHHHHHHHT--TT-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHHhcChhhHHHHHH--cC-CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 999999999998775444444 64 999999999999999999999999999988666666666679999999999998
Q ss_pred CChHHHHHHHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHH
Q 014913 251 ISQQASKSALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIV 329 (416)
Q Consensus 251 ~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~L 329 (416)
+...+..++.+|.+|+. +++++..+++.|+++.|+.+|.+.. ...+++.++.+|.+|+.+++++..++. .|+++.|
T Consensus 153 -~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L 229 (644)
T 2z6h_A 153 -NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQAL 229 (644)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHH
Confidence 88889999999999996 5679999999999999999998763 467889999999999999999999988 6888877
Q ss_pred HHHHHh---------------------------------------cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChH
Q 014913 330 SKKILR---------------------------------------VSQVASERAVRILLSISKFSATNSVLQEMLQIGVV 370 (416)
Q Consensus 330 v~~l~~---------------------------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v 370 (416)
++++.. .+..+++.|+.+|.+|+.+.. +.+..+.+.|++
T Consensus 230 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~--~~~~~v~~~g~v 307 (644)
T 2z6h_A 230 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--KNKMMVCQVGGI 307 (644)
T ss_dssp HTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCH
Confidence 765433 344567777777777776543 467888899999
Q ss_pred HHHHHHHhcCCc-HHHHHHHHHHHHHHHH
Q 014913 371 AKLCLVLQVDNS-MKTKDKAREVLKLHAR 398 (416)
Q Consensus 371 ~~L~~ll~~~~~-~~~k~~A~~ll~~l~~ 398 (416)
+.|+.+|...++ +..++.|..+|.+|..
T Consensus 308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 308 EALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 999999986433 7899999999998854
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=2.6e-24 Score=218.79 Aligned_cols=283 Identities=12% Similarity=0.142 Sum_probs=233.8
Q ss_pred CChHHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 93 INKAQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 93 ~~~~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
...+.++.|+..|. +++..|..|+..|.+++.+.+ ++..+.+ .|+++.|+++|.++. ++.++.
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~--------------~~~~~~ 78 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN--------------DVETAR 78 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCC--------------CHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCC--------------CHHHHH
Confidence 44567899999997 467999999999999998654 7777775 499999999998652 478999
Q ss_pred HHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC
Q 014913 171 EALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH 250 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 250 (416)
.|+.+|.+|+.+++....++. .| +++.|+++|++++++++..|+++|.+++...++.+..+.+.|+++.|+.+|+++
T Consensus 79 ~a~~~L~~ls~~~~~~~~i~~--~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 79 CTAGTLHNLSHHREGLLAIFK--SG-GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHHHTTSHHHHHHHHH--TT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHHHHHHHHHcCchhHHHHHH--cC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 999999999988775545554 64 999999999999999999999999999988666666666679999999999998
Q ss_pred CChHHHHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHH
Q 014913 251 ISQQASKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIV 329 (416)
Q Consensus 251 ~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~L 329 (416)
+.+.+..++.+|.+|+.. ++++..+++.|+++.|+.+|.+.. +...++.++.+|.+|+.+++++..++. .|+++.|
T Consensus 156 -~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L 232 (529)
T 1jdh_A 156 -NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQAL 232 (529)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHH
T ss_pred -CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHH
Confidence 899999999999999875 568999999999999999998763 556778899999999999999988887 6777776
Q ss_pred HHHHH---------------------------------------hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChH
Q 014913 330 SKKIL---------------------------------------RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVV 370 (416)
Q Consensus 330 v~~l~---------------------------------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v 370 (416)
++++. +.++..++.|+.+|++|+.++. +.+..+.+.|++
T Consensus 233 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~--~~~~~~~~~~~v 310 (529)
T 1jdh_A 233 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--KNKMMVCQVGGI 310 (529)
T ss_dssp HTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH--HHHHHHHHTTHH
T ss_pred HHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHcCCh
Confidence 65443 2345677778888888877543 478888999999
Q ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHHH
Q 014913 371 AKLCLVLQVDN-SMKTKDKAREVLKLHAR 398 (416)
Q Consensus 371 ~~L~~ll~~~~-~~~~k~~A~~ll~~l~~ 398 (416)
+.|+.+|.... ++..++.|..+|.++..
T Consensus 311 ~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 311 EALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 99999997632 37899999999998864
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.93 E-value=2.5e-25 Score=201.02 Aligned_cols=197 Identities=12% Similarity=0.093 Sum_probs=167.3
Q ss_pred HHHHHHHHHhc-Cc--HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 97 QITKLLNEAAK-SP--QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 97 ~i~~lv~~l~~-~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
.++.+++.|.+ ++ +.+..|+..|++++.+++.+|..|++.|+||+||++|+++ ++++++.|+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~---------------~~~vq~~Aa 73 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ---------------NEDVQRAVC 73 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC---------------CHHHHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC---------------CHHHHHHHH
Confidence 47899999973 45 7788999999999999889999999999999999999987 589999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc---c
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ-RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH---D 249 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~---~ 249 (416)
++|.||+.+++.++..|.+ .| +|+.|+++|+ +++.+++++|+.+|++|+..++++..++ + ++|++|+.++. +
T Consensus 74 ~aL~nLa~~~~~nk~~I~~-~G-aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~-~-~~i~~Lv~ll~~p~s 149 (233)
T 3tt9_A 74 GALRNLVFEDNDNKLEVAE-LN-GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMI-T-EALLTLTENIIIPFS 149 (233)
T ss_dssp HHHHHHHTTCHHHHHHHHH-TT-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHH-H-HHHHHHCCCCCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH-cC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHH-h-ccHHHHHHHHhcccc
Confidence 9999999865555666663 75 9999999998 5799999999999999999877777765 3 57999999763 1
Q ss_pred C------------CChHHHHHHHHHHHHhCCCC-cchHHHHhh-CcHHHHHHHhhcc----cchhhhHHHHHHHHHHHcC
Q 014913 250 H------------ISQQASKSALEVLVNICPWG-RNRIKGVEA-GAVSILIDLLLDS----SLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 250 ~------------~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~-G~v~~Lv~lL~~~----~~~~~~~~~a~~~L~~La~ 311 (416)
+ .+.+++++|+++|+||+..+ ++|..|.+. |+|++|+.+++.. ..+...+|+|+.+|+||+.
T Consensus 150 G~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 150 GWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp CCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred CCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 1 15589999999999999865 799999985 7899999999863 1256789999999999986
Q ss_pred C
Q 014913 312 C 312 (416)
Q Consensus 312 ~ 312 (416)
.
T Consensus 230 ~ 230 (233)
T 3tt9_A 230 Q 230 (233)
T ss_dssp C
T ss_pred h
Confidence 4
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.93 E-value=2.9e-24 Score=224.43 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=235.2
Q ss_pred hHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.++.+++.|.+ +++.+..|+..|++++.+. +++..+.+.|+|+.|+++|.++ ++.++..|
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~---------------~~~v~~~A 118 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSP---------------VDSVLFYA 118 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTCS---------------SHHHHHHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhCC---------------CHHHHHHH
Confidence 4678899999973 5689999999999998875 4999999999999999999987 58999999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+++|.+++.+.+..+..+.+ .| +++.|+++|++++.+++..++.+|.+++...+..+..+.+.|+++.|+.+|+++..
T Consensus 119 ~~aL~nL~~~~~~~~~~v~~-~g-~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~ 196 (644)
T 2z6h_A 119 ITTLHNLLLHQEGAKMAVRL-AG-GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 196 (644)
T ss_dssp HHHHHHHHHHSTTHHHHHHH-TT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCcchhHHHHHH-CC-ChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh
Confidence 99999999875555555542 64 99999999999999999999999999996444444444556999999999998745
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc-------------------------------------cch
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS-------------------------------------SLE 295 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~-------------------------------------~~~ 295 (416)
...+..++.+|+||+.+++++..+++.|+++.|+.++... ..+
T Consensus 197 ~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d 276 (644)
T 2z6h_A 197 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 276 (644)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC
Confidence 6788999999999999999999999999888887665432 015
Q ss_pred hhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHHHHHhcC--hhhhHHHHHHHHHHhcCCCC-hHHHHHHHhcChHH
Q 014913 296 RRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSKKILRVS--QVASERAVRILLSISKFSAT-NSVLQEMLQIGVVA 371 (416)
Q Consensus 296 ~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~~l~~~~--~~~~~~a~~~L~~L~~~~~~-~~~~~~i~~~G~v~ 371 (416)
..+++.|+++|.+|+.. ++++..+.. .|+++.|+++|.+.+ ..+++.|+.+|.+|+....+ +..+..+...|+++
T Consensus 277 ~~v~~~a~~aL~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~ 355 (644)
T 2z6h_A 277 INVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLP 355 (644)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChH
Confidence 67788888888888875 466777777 799999999887643 58999999999999986543 23556688899999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 372 KLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 372 ~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.|+.+|+++.++..++.|.++|.++..
T Consensus 356 ~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 356 VVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 999999876457899999999998875
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.3e-23 Score=187.89 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=173.4
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCC-cchH
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWG-RNRI 274 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~~ 274 (416)
+..+.|+.+|++++.+++..|+++|.+++..++.....+.+.|+++.|+.+|+++ +..+++.|+++|.||+... +++.
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4899999999999999999999999999966555555556669999999999999 9999999999999999654 6889
Q ss_pred HHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 275 KGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 275 ~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
.+++.|++|.|+.+|.++ ++.+++.|+++|.+|+.. ++.+..+.. .|+++.|+++|.+.+..+++.|+.+|.+|+.
T Consensus 91 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999998 899999999999999975 445566666 7999999998887788999999999999998
Q ss_pred CCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 354 FSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 354 ~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+. ..+..+.+.|+++.|+.++++ .++..|+.|..+|..+.+
T Consensus 168 ~~~--~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGN--EQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCH--HHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred CCc--HHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 754 478889999999999999986 489999999999998865
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.1e-23 Score=188.27 Aligned_cols=196 Identities=19% Similarity=0.212 Sum_probs=171.3
Q ss_pred HHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
..+.++..|. ++++.+..|++.|.+++..+++++..+.+.|+||.|+++|.++ ++.+++.|+++
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---------------~~~v~~~a~~~ 77 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---------------NEQILQEALWA 77 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---------------CHHHHHHHHHH
Confidence 3456666665 4679999999999999988888999999999999999999987 58999999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQA 255 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 255 (416)
|.+++.+++..+..+.+ .| +++.|+.+|++++..++..|+++|.+|+.........+.+.|+++.|+.+|+++ +..+
T Consensus 78 L~~l~~~~~~~~~~i~~-~g-~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v 154 (210)
T 4db6_A 78 LSNIASGGNEQIQAVID-AG-ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQI 154 (210)
T ss_dssp HHHHTTSCHHHHHHHHH-TT-CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHH
T ss_pred HHHHhcCCcHHHHHHHH-CC-CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHH
Confidence 99999765555555553 64 999999999999999999999999999976555555556679999999999998 9999
Q ss_pred HHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 256 SKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 256 ~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
++.|+++|.||+.. ++++..+++.|+++.|++++.++ ++.+++.|+.+|.+|+.+
T Consensus 155 ~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 155 LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhcC
Confidence 99999999999987 56888899999999999999987 899999999999999863
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=6.3e-23 Score=218.36 Aligned_cols=285 Identities=13% Similarity=0.096 Sum_probs=232.2
Q ss_pred hHHHHHHHHHHh-c-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAA-K-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~-~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
.+.++.|+..|. + +++.|..|+.+|++++.. +.++..|.+.|+|+.|+.+|++. ++.++..|
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~---------------~~~v~~~A 254 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP---------------VDSVLFHA 254 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS---------------CHHHHHHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC---------------CHHHHHHH
Confidence 356788888886 3 679999999999998876 45899999999999999999987 58899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+++|.+|+.+.++.+..+.+ .| +++.|+++|.+++.+++..++.+|.+++..++..+..+...|+++.|+.+|+++..
T Consensus 255 ~~aL~nLa~~~~~~~~~v~~-~g-~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~ 332 (780)
T 2z6g_A 255 ITTLHNLLLHQEGAKMAVRL-AG-GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332 (780)
T ss_dssp HHHHHHHHHHSTTHHHHHHH-TT-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCChhhHHHHHH-cC-CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCH
Confidence 99999999876556666653 64 99999999999999999999999999996544334444555999999999998744
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc-------------------------------------cch
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS-------------------------------------SLE 295 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~-------------------------------------~~~ 295 (416)
...++.++.+|++|+...+++..+++.|+|+.|+.+|.+. ..+
T Consensus 333 ~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d 412 (780)
T 2z6g_A 333 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD 412 (780)
T ss_dssp HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC
Confidence 5667788999999999888999998888877776655432 015
Q ss_pred hhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHHHHHhcC--hhhhHHHHHHHHHHhcCCCCh-HHHHHHHhcChHH
Q 014913 296 RRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSKKILRVS--QVASERAVRILLSISKFSATN-SVLQEMLQIGVVA 371 (416)
Q Consensus 296 ~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~~l~~~~--~~~~~~a~~~L~~L~~~~~~~-~~~~~i~~~G~v~ 371 (416)
..+++.|+++|.+|+.. ++++..+.. .|+++.|+++|.+.+ ..+++.|+.+|.+|+..+.+. ..+..+...|+++
T Consensus 413 ~~vr~~A~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~ 491 (780)
T 2z6g_A 413 INVVTCAAGILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP 491 (780)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHH
Confidence 67888899999999886 456666666 799999999887643 389999999999999866542 2456788899999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 372 KLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 372 ~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.|+.+|++...+..++.|.++|.++..
T Consensus 492 ~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 492 VVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 999999876456899999999999985
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=8.5e-23 Score=217.34 Aligned_cols=280 Identities=12% Similarity=0.124 Sum_probs=231.9
Q ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESA-GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+.++.|+..|. .++.+|..|+.+|.+++.+.+ ++..+.+. |+|+.|+++|.++. ++.++..|+
T Consensus 150 g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-~~~~i~~~~~~i~~Lv~~L~~~~--------------d~~vr~~Aa 214 (780)
T 2z6g_A 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN--------------DVETARCTS 214 (780)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-HHHHHTTCHHHHHHHHHHHHHCC--------------CHHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-hHHHHHhccChHHHHHHHHcCCC--------------CHHHHHHHH
Confidence 45778888886 357999999999999998654 77777754 99999999998662 588999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
.+|.+|+.+.++...++. .| +++.|+++|++++..++..|+++|.+|+...+..+..+.+.|+++.|+.+|+++ +.
T Consensus 215 ~aL~~Ls~~~~~~~~i~~--~g-~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~ 290 (780)
T 2z6g_A 215 GTLHNLSHHREGLLAIFK--SG-GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NV 290 (780)
T ss_dssp HHHHHHHTSHHHHHHHHH--TT-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CH
T ss_pred HHHHHHhCCchhHHHHHH--cC-CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CH
Confidence 999999988776444444 64 999999999999999999999999999988766666676679999999999998 88
Q ss_pred HHHHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHH
Q 014913 254 QASKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~ 332 (416)
.++..++.+|.+|+.. ++++..+++.|+++.|+.+|+... ....++.++.+|.+|+.+.+++..++. .|+++.|+.+
T Consensus 291 ~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~l 368 (780)
T 2z6g_A 291 KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLH 368 (780)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHH
Confidence 9999999999999874 569999999999999999998763 456677899999999998888888877 6777666654
Q ss_pred H---------------------------------------HhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHH
Q 014913 333 I---------------------------------------LRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKL 373 (416)
Q Consensus 333 l---------------------------------------~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L 373 (416)
+ .+.+..+++.|+.+|.+|+.+.. +.+..+.+.|+++.|
T Consensus 369 L~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~--~~~~~i~~~g~i~~L 446 (780)
T 2z6g_A 369 LTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--KNKMMVCQVGGIEAL 446 (780)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHHHHHHTTTHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHH
Confidence 3 23345677888888888887653 467888899999999
Q ss_pred HHHHhcCC-cHHHHHHHHHHHHHHHH
Q 014913 374 CLVLQVDN-SMKTKDKAREVLKLHAR 398 (416)
Q Consensus 374 ~~ll~~~~-~~~~k~~A~~ll~~l~~ 398 (416)
+.+|...+ .+..++.|..+|.+|..
T Consensus 447 v~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 447 VRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 99997633 34899999999998864
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=2.7e-22 Score=188.58 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHhcC-------------cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHH-HhccCCCCCCCCCCCC
Q 014913 95 KAQITKLLNEAAKS-------------PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLAS-FVTNSNAMEESPEGFD 160 (416)
Q Consensus 95 ~~~i~~lv~~l~~~-------------~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~~~ 160 (416)
.+.+...+..|.+. .+.+..|+..|.+++...+ |+..|.+.|++|+|+. +|.++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~----------- 94 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAG----------- 94 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCS-----------
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCC-----------
Confidence 45556666666321 2678889999999998654 8999999999999999 99887
Q ss_pred CCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhH
Q 014913 161 NLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQEL 239 (416)
Q Consensus 161 ~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 239 (416)
++.+++.|+++|.+++.+++..+..+.+ .| +++.|+.+|+++ +..+++.|+|+|.+|+.+.......+...|+
T Consensus 95 ----~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g-~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 95 ----AAGLRWRAAQLIGTCSQNVAAIQEQVLG-LG-ALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp ----SHHHHHHHHHHHHHHHTTCHHHHHHHHH-TT-HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred ----CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CC-CHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 5899999999999999887766666663 64 999999999964 8999999999999999765554444555699
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCC-CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 240 FVEVIQVLHDHISQQASKSALEVLVNICPW-GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
+++|+.+|+++ +..+++.|+++|.+|+.+ ++.+..+++.|+|++|+.+|... +..+++.|+.+|.+|+..
T Consensus 169 i~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhC
Confidence 99999999998 999999999999999875 45889999999999999999988 899999999999999987
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.9e-22 Score=205.47 Aligned_cols=283 Identities=14% Similarity=0.114 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcCh-------------------------------------h-hhhHHh
Q 014913 95 KAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENE-------------------------------------T-NKRCLE 134 (416)
Q Consensus 95 ~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~-------------------------------------~-~~~~i~ 134 (416)
.+-+..|+..++. +......++..|.|++...+ + ++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 3456677777752 34677778888888776322 1 577889
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHH---
Q 014913 135 SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYE--- 211 (416)
Q Consensus 135 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~--- 211 (416)
++|+||.|+.+++++ ++.+++.|+++|.+|+.+.+++..++. .| +++.|+.+|.+++..
T Consensus 455 eaGvIp~Lv~Ll~S~---------------s~~~re~A~~aL~nLS~d~~~R~~lvq--qG-al~~LL~lL~s~~~~~~~ 516 (778)
T 3opb_A 455 RTELISFLKREMHNL---------------SPNCKQQVVRIIYNITRSKNFIPQLAQ--QG-AVKIILEYLANKQDIGEP 516 (778)
T ss_dssp TTTHHHHHHHHGGGS---------------CHHHHHHHHHHHHHHHTSGGGHHHHHH--TT-HHHHHHHHTTCC---CCH
T ss_pred HCcCHHHHHHHHcCC---------------CHHHHHHHHHHHHHHcCCHHHHHHHHH--CC-CHHHHHHHHhcCCCcchH
Confidence 999999999999887 589999999999999988776555555 54 999999999988654
Q ss_pred HHHHHHHHHHHhhcccCchhhHhh--hhhHHHHHHHHhccCCCh-------------HHHHHHHHHHHHhCCCCc-----
Q 014913 212 SRAYAVLLLKSMLEVAEPMQLISL--RQELFVEVIQVLHDHISQ-------------QASKSALEVLVNICPWGR----- 271 (416)
Q Consensus 212 ~~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~Lv~lL~~~~~~-------------~~~~~A~~aL~nLs~~~~----- 271 (416)
.++.|+.+|.+|+...+....+.. ..|+|++|+.+|..+... -.+..|+.||.||+..++
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 899999999999865444332211 138999999999832111 227799999999999874
Q ss_pred chHHHHhh-CcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhH-HHHHhcC-----CchHHHHHHHHhcChhhhHHH
Q 014913 272 NRIKGVEA-GAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGR-AELLKHG-----AGLAIVSKKILRVSQVASERA 344 (416)
Q Consensus 272 n~~~i~~~-G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~~-----~~v~~Lv~~l~~~~~~~~~~a 344 (416)
.|..++++ |++|.|..+|.++ +..++..|+.+++||+.+++++ ..+.... +.++.||.++...+...++.|
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AA 674 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAV 674 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHH
Confidence 37888985 9999999999988 8899999999999999998875 3554322 237889997776678999999
Q ss_pred HHHHHHHhcCCCChHHHHHHHhc-ChHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHh
Q 014913 345 VRILLSISKFSATNSVLQEMLQI-GVVAKLCLVLQVD-NSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 345 ~~~L~~L~~~~~~~~~~~~i~~~-G~v~~L~~ll~~~-~~~~~k~~A~~ll~~l~~~ 399 (416)
.++|.+++...+ .+.+.+.+. ++++.|+.+++.. .++..+.+++.++.+|..+
T Consensus 675 agALAnLts~~~--~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 675 AAIFANIATTIP--LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHCH--HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCh--HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 999999976543 467777775 8999999999872 3899999999999999973
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=6.7e-21 Score=179.07 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=160.8
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHH-HHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQ-IMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
.+.+..|+..|.+++.+.++...++. .| +++.|+. +|+++++++|+.|+|+|.+++.+++..+..+.+.|++|+|+
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~--~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQ--LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHH--TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHH--cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 45688899999999988776555655 64 9999999 99999999999999999999987666666666779999999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hhhHHHHHhc
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AEGRAELLKH 322 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~~~~~i~~~ 322 (416)
.+|+++.+..+++.|+|||.||+.+.. +...+++.|++|+|+.+|.++ +..++..|+++|.+|+.+ ++.+..+++
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~- 207 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCS- 207 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHH-
Confidence 999964378999999999999998664 677889999999999999998 899999999999999874 667778887
Q ss_pred CCchHHHHHHHHhcChhhhHHHHHHHHHHhcCC
Q 014913 323 GAGLAIVSKKILRVSQVASERAVRILLSISKFS 355 (416)
Q Consensus 323 ~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~ 355 (416)
.|+++.|+.+|.+.+..+++.|+.+|.+|+...
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 899999999888778899999999999999874
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.5e-20 Score=188.55 Aligned_cols=280 Identities=11% Similarity=0.131 Sum_probs=213.6
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESA-GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
-+..+++.|.+ +.+.+..|+..|..++.+.+ .|+.+++. |+++.|+.+++... +..+...++.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~--------------d~s~~Ygal~ 399 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQK--------------MTHCLYGLLV 399 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTC--------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCC--------------CchHHHHHHH
Confidence 34445555544 33668999999999988754 88888875 77999999998631 4678888999
Q ss_pred HHHhcCCChhh--------------------------------------hhhhhccccCCccHHHHHHHhcCCHHHHHHH
Q 014913 175 ILCNLKISELG--------------------------------------LKSLVMGRNGTFVDSLTQIMQRGTYESRAYA 216 (416)
Q Consensus 175 ~L~~l~~~~~~--------------------------------------~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a 216 (416)
+|.|++.+.++ ++..+. ..| +++.|+.+++++++.+|+.|
T Consensus 400 IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~-eaG-vIp~Lv~Ll~S~s~~~re~A 477 (778)
T 3opb_A 400 IMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL-RTE-LISFLKREMHNLSPNCKQQV 477 (778)
T ss_dssp HHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT-TTT-HHHHHHHHGGGSCHHHHHHH
T ss_pred HHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH-HCc-CHHHHHHHHcCCCHHHHHHH
Confidence 99999874331 234444 365 99999999999999999999
Q ss_pred HHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH---HHHHHHHHHHHhCCCCcchHHHHh---hCcHHHHHHHhh
Q 014913 217 VLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ---ASKSALEVLVNICPWGRNRIKGVE---AGAVSILIDLLL 290 (416)
Q Consensus 217 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~---~~~~A~~aL~nLs~~~~n~~~i~~---~G~v~~Lv~lL~ 290 (416)
+++|.+|+.+.+++..++ ..|++++|+.+|.++ +.. .++.|+.||.+|....+....+.. .|+|++|+.||.
T Consensus 478 ~~aL~nLS~d~~~R~~lv-qqGal~~LL~lL~s~-~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 478 VRIIYNITRSKNFIPQLA-QQGAVKIILEYLANK-QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHHHHHHHTSGGGHHHHH-HTTHHHHHHHHTTCC----CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred HHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcC-CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence 999999998866666555 559999999999987 443 899999999999865554433321 399999999998
Q ss_pred cccchh------------hhHHHHHHHHHHHcCCh-----hhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 291 DSSLER------------RASEMILTVLDLLCQCA-----EGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 291 ~~~~~~------------~~~~~a~~~L~~La~~~-----~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
.++... -.+..|+.+|.|||..+ +.|..++.+.|+++.|+++|.+.+..+++.|+.++.||+.
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 321011 12778999999999976 3477788734899999998888888999999999999998
Q ss_pred CCCChHHHHHHHh------cChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 354 FSATNSVLQEMLQ------IGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 354 ~~~~~~~~~~i~~------~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
+... +.+.+.. .+.++.|+.+++++ +.++|+.|+.+|.++..
T Consensus 636 ~~e~--i~~k~~~~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts 683 (778)
T 3opb_A 636 HPLT--IAAKFFNLENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIAT 683 (778)
T ss_dssp SGGG--TGGGTSCCSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred CcHH--HHHHHHhhcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence 5532 1123321 23588999999875 89999999999999854
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.83 E-value=7e-21 Score=144.37 Aligned_cols=73 Identities=34% Similarity=0.573 Sum_probs=68.2
Q ss_pred CCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..+|++|.||||+++|+|||+++|||+||+.||++||.. +.+||.|++.+. ...+.+|..++++|+.|...+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~-~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLT-ESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCC-hHhcchHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999999999999999986 679999999998 8899999999999999998764
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.82 E-value=7.4e-21 Score=148.47 Aligned_cols=74 Identities=34% Similarity=0.543 Sum_probs=68.9
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..++|++|.||||+++|+|||+++|||+||+.||++||.. +.+||.|++++. ...+.||..+++.|+.|...+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLT-ESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCC-TTSSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCC-hhhceECHHHHHHHHHHHHHhh
Confidence 3457999999999999999999999999999999999974 689999999998 8899999999999999998875
No 41
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.82 E-value=1.6e-20 Score=146.07 Aligned_cols=73 Identities=33% Similarity=0.566 Sum_probs=68.4
Q ss_pred CCCCCcccCcCccccCCCceecCCc-CcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVPTG-ITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~cg-ht~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
.++|++|.||||+++|+|||+++|| |+||+.||++||.. +.+||.|++.+. ...+.+|..+++.|+.|...+.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~-~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLT-MDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCC-TTTSEECHHHHHHHHHHHHHST
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCC-hhhceEcHHHHHHHHHHHHHcc
Confidence 4579999999999999999999999 99999999999986 579999999998 8899999999999999999875
No 42
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.78 E-value=2.5e-19 Score=133.99 Aligned_cols=75 Identities=52% Similarity=0.976 Sum_probs=69.3
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..+++++|.||||+++|.+||+++|||+||+.||.+|+..+ ..+||.|++.+. ...+.+|..++++|+.|..++.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~-~~~CP~C~~~~~-~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQETLL-HAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCCBCS-SCCCEECTTTHHHHHHHHHHSC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC-cCCCCCCcCCCC-hhhCccCHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999999999999999764 789999999998 8899999999999999999875
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.77 E-value=3.3e-19 Score=152.65 Aligned_cols=75 Identities=31% Similarity=0.602 Sum_probs=69.2
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..++|++|.||||+++|+|||+++|||+||+.||.+||..+ ..+||.|++++. ...+.||..++++|+.|...++
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~-~~tcP~t~~~l~-~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFDPVTRSPLT-QDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHCT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC-CCCCCCCcCCCC-hhhCcchHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999999999999999875 337999999998 8899999999999999998875
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=132.07 Aligned_cols=73 Identities=27% Similarity=0.487 Sum_probs=64.8
Q ss_pred CCCcccCcCccccCCCceecC-CcCcccHHHHHHHHHcC----CCCCCCC--CCcc-ccCCCCCCCchhHHHHHHHHHHh
Q 014913 6 VPTFFLCPISLAIMKDPVTVP-TGITYDRESIEKWLFAG----KNNTCPM--TKQV-LSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~-cght~c~~ci~~~~~~~----~~~~CP~--~~~~-l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
.+++|.||||+++|+|||+++ |||+||+.||++||..+ +..+||+ |++. +. ..++.+|..++++|+.|...
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~-~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR-KSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC-GGGEEECHHHHHHHHHHHTT
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC-HhhCcCCHHHHHHHHHHHHH
Confidence 578899999999999999995 99999999999999863 2579999 6665 77 78999999999999999987
Q ss_pred cc
Q 014913 78 NA 79 (416)
Q Consensus 78 ~~ 79 (416)
+.
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 65
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.71 E-value=1e-15 Score=154.06 Aligned_cols=290 Identities=16% Similarity=0.174 Sum_probs=217.7
Q ss_pred CCCCCChHHHHHHHHHHhcC--cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCc
Q 014913 89 PKPPINKAQITKLLNEAAKS--PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESS 166 (416)
Q Consensus 89 ~~~~~~~~~i~~lv~~l~~~--~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~ 166 (416)
+.++...+.|+.|..++.++ .+.|+.|+..|+.++++ ++..+. +++++.|+..|+.+. +|.
T Consensus 14 ~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~-------------~D~ 76 (651)
T 3grl_A 14 GPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDR-------------SDS 76 (651)
T ss_dssp ----CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCT-------------TCH
T ss_pred CCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhccc-------------ccH
Confidence 34456678999999999743 59999999999999764 555544 567999999999873 268
Q ss_pred chHHHHHHHHHhcCCChhh-----------------hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC-
Q 014913 167 RPVDEALSILCNLKISELG-----------------LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE- 228 (416)
Q Consensus 167 ~~~~~A~~~L~~l~~~~~~-----------------~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~- 228 (416)
++.+.++.+|.++...++. ....+.+.. +.|+.|+++|++.+..+|.++...|..|+....
T Consensus 77 e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~-~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~ 155 (651)
T 3grl_A 77 EIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ-ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGP 155 (651)
T ss_dssp HHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC-ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcH
Confidence 8899999999875543321 112222346 599999999999999999999999999996644
Q ss_pred -chhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh-hCcHHHHHHHhhccc--chhhhHHHHHH
Q 014913 229 -PMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSS--LERRASEMILT 304 (416)
Q Consensus 229 -~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~--~~~~~~~~a~~ 304 (416)
....+...++||+.||.+|++. ....|..|+..|.+|+.+..+.+.++. +|+++.|+.++.... ....+++.++.
T Consensus 156 ~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ 234 (651)
T 3grl_A 156 QVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLI 234 (651)
T ss_dssp HHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHH
Confidence 3555666779999999999988 889999999999999998876555555 799999999998752 13378899999
Q ss_pred HHHHHcCC-hhhHHHHHhcCCchHHHHHHHHhcChh------hhH---HHHHHHHHHhcCCC----ChHHHHHHHhcChH
Q 014913 305 VLDLLCQC-AEGRAELLKHGAGLAIVSKKILRVSQV------ASE---RAVRILLSISKFSA----TNSVLQEMLQIGVV 370 (416)
Q Consensus 305 ~L~~La~~-~~~~~~i~~~~~~v~~Lv~~l~~~~~~------~~~---~a~~~L~~L~~~~~----~~~~~~~i~~~G~v 370 (416)
+|.+|.+. ..|+..+.+ .++++.|..++....+. ... .+..++.-|...+. ....+..+.+.|++
T Consensus 235 ll~nLLr~N~sNQ~~FrE-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l 313 (651)
T 3grl_A 235 LLQNLLKNNNSNQNFFKE-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLL 313 (651)
T ss_dssp HHHHHHTTCHHHHHHHHH-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHhcCHHHHHHHHH-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCH
Confidence 99999985 557777777 79999999855432211 112 25556666666543 23567788999999
Q ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHHHH
Q 014913 371 AKLCLVLQVDN-SMKTKDKAREVLKLHAR 398 (416)
Q Consensus 371 ~~L~~ll~~~~-~~~~k~~A~~ll~~l~~ 398 (416)
+.|++++.+.+ +...+..|..++..+-+
T Consensus 314 ~~Ll~ll~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 314 QQLCTILMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence 99999987754 45677777776666555
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=127.40 Aligned_cols=77 Identities=30% Similarity=0.461 Sum_probs=68.7
Q ss_pred CCCCCCcccCcCccccCCCceecC-CcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVP-TGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~-cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..++++++.||||+++|.+||+++ |||+||+.||.+|+...+...||.|++.+.....+.+|..++++++.|...+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 456789999999999999999999 99999999999999865468999999997426789999999999999998764
No 47
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=9.7e-18 Score=156.88 Aligned_cols=75 Identities=32% Similarity=0.625 Sum_probs=69.1
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
..++|++|.||||+++|+|||+++||||||+.||++||..+ ..+||+|+++++ ...+.||..+++.|+.|+..++
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~-~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLT-QEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCC-GGGCEECHHHHHHHHHHHTTCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCc-hhcCcccHHHHHHHHHHHHHCC
Confidence 45689999999999999999999999999999999999875 456999999998 8899999999999999998875
No 48
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=124.49 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
++++.||||+++|.+||+++|||+||+.||.+|+..+ ...||.|++.+.....+.+|..++++++.|...
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ-VFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC-cCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 5678999999999999999999999999999999853 679999999998337899999999999998754
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.5e-15 Score=135.79 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=64.6
Q ss_pred CCCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCC--CCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 6 VPTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPM--TKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~--~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
...+|+||||+++|+|||++ .|||+||+.||.+||..++...||+ |++.+. ..++.+|..++++++.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~-~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS-MRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC-GGGEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc-hhhCCcCHHHHHHHHHHHHH
Confidence 35779999999999999985 9999999999999998755678999 999998 88999999999999999775
No 50
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=108.43 Aligned_cols=62 Identities=32% Similarity=0.486 Sum_probs=51.8
Q ss_pred CCCCCCcccCcCccccCCCceecC-CcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVP-TGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~-cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
..++++++.||||+++|.+||+++ |||+||+.||.+|+...+...||.|++.+...+.+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 345788999999999999999999 99999999999999875457999999986534455454
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.54 E-value=3.9e-15 Score=125.18 Aligned_cols=70 Identities=19% Similarity=0.329 Sum_probs=62.7
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCC-CCCCchhHHHHHHHHHHh
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSEC-ELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~-~l~~n~~l~~~i~~~~~~ 77 (416)
+++++.||||+++|.+||+++|||+||+.||.+|+..+ ...||.|++.+. .. .+.+|..++++++.|...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-VFSCPACRHDLG-QNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCCBCC-TTCCCCBCHHHHHHHHHHSTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-CCcCCCCCccCC-CCCCCCCCHHHHHHHHHHhhH
Confidence 35678999999999999999999999999999999864 678999999998 55 899999999999988743
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.53 E-value=6.9e-13 Score=133.66 Aligned_cols=283 Identities=11% Similarity=0.097 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhcChh-----------------hhhHH-hhcCcHHHHHHHhccCCCCC
Q 014913 95 KAQITKLLNEAAK---SPQMQIKCLKKLRSIAAENET-----------------NKRCL-ESAGAVEFLASFVTNSNAME 153 (416)
Q Consensus 95 ~~~i~~lv~~l~~---~~~~~~~Al~~L~~l~~~~~~-----------------~~~~i-~~~G~i~~Lv~lL~~~~~~~ 153 (416)
...++.|+..|+. |.+.-..++..|.++...++. +.+.+ .+.+.|+.|+.+|++.
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~---- 134 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF---- 134 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC----
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc----
Confidence 4568999999973 457777888999887654332 22333 3568999999999877
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHhcCCChhh-hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh
Q 014913 154 ESPEGFDNLHESSRPVDEALSILCNLKISELG-LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL 232 (416)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~-~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 232 (416)
+..++.+++.+|..|+.+... .++.|...+| +|+.|+++|++....+|-.+...|.+|+..+...++
T Consensus 135 -----------df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~-gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQk 202 (651)
T 3grl_A 135 -----------DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM-GVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQK 202 (651)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTT-HHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcc-cHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence 589999999999998876544 4555554685 999999999999999999999999999998888888
Q ss_pred HhhhhhHHHHHHHHhccCCC----hHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhccc----chhhhHHH--
Q 014913 233 ISLRQELFVEVIQVLHDHIS----QQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSS----LERRASEM-- 301 (416)
Q Consensus 233 ~~~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~----~~~~~~~~-- 301 (416)
++...|+++.|+.+++.. . ..+.+.++..|.||.... .|+..+.+.|.++.|..+|..+. |.+.-..+
T Consensus 203 lVAFEnaFe~Lf~Ii~~E-g~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 203 IVAFENAFERLLDIITEE-GNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHTTHHHHHHHHHHHH-TGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHhc-CCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence 888889999999999864 2 278899999999998766 49999999999999999997542 11112333
Q ss_pred -HHHHHHHHcCC-------hhhHHHHHhcCCchHHHHHHHHhc--ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcC---
Q 014913 302 -ILTVLDLLCQC-------AEGRAELLKHGAGLAIVSKKILRV--SQVASERAVRILLSISKFSATNSVLQEMLQIG--- 368 (416)
Q Consensus 302 -a~~~L~~La~~-------~~~~~~i~~~~~~v~~Lv~~l~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G--- 368 (416)
++.+++-|... ..++.++.. .|+++.|++++... ....+..|+.++..+.+++. ..++.+.+.-
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~ 358 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPS 358 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESS
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCC
Confidence 66677777654 134667777 79999999977754 45788899999999888765 3666666532
Q ss_pred ------hHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 014913 369 ------VVAKLCLVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 369 ------~v~~L~~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
.+..|+.++.+......|-.|...++..-
T Consensus 359 ~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 359 NPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp SSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 34444554554446677766666666544
No 53
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.52 E-value=2.3e-15 Score=105.75 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=49.1
Q ss_pred cccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchh
Q 014913 9 FFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHT 66 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~ 66 (416)
.|.||||+++|+|||++ +|||+||+.||++|+.+ +.+||+|++++. ..++.+++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~-~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLS-IEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCC-GGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCC-hhhcEECcc
Confidence 58999999999999999 99999999999999986 356999999998 888888754
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=5.1e-15 Score=115.75 Aligned_cols=70 Identities=20% Similarity=0.319 Sum_probs=63.5
Q ss_pred CCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 7 PTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
++++.||||.+.|.+|+++ +|||+||+.||.+|+.. ...||.|++.+. ...+.+|..++++++.|.....
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~-~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVT-EPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCC-hhhCCcCHHHHHHHHHHHHHHH
Confidence 4568999999999999988 99999999999999975 579999999998 7889999999999999988754
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.51 E-value=7.3e-15 Score=114.92 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=63.5
Q ss_pred CCCcccCcCccccCCCcee-cCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 6 VPTFFLCPISLAIMKDPVT-VPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~-l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
+.+++.||||+++|.+||+ ++|||+||+.||.+|+... ...||.|+..+. ...+..+..+..+++.+...+.
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQ-LRELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCC-GGGCEECTTHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCC-HHHhHhhHHHHHHHHHHHHHHH
Confidence 3567999999999999999 8999999999999999874 479999999998 8889999988888888776643
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.47 E-value=2.3e-14 Score=113.90 Aligned_cols=68 Identities=13% Similarity=0.348 Sum_probs=59.7
Q ss_pred CCCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCC----CCCCchhHHHHHHHHHH
Q 014913 6 VPTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSEC----ELTPNHTLRRLIQSWCT 76 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~----~l~~n~~l~~~i~~~~~ 76 (416)
+++++.||||.++|.+||++ +|||+||+.||.+|+.. ...||.|++.+. .. .+.+|..+.++++.|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVH-KTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSC-SSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCcccc-ccCcccccCcCHHHHHHHHHHhh
Confidence 46789999999999999998 99999999999999976 578999999987 44 67788889888887754
No 57
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-15 Score=113.49 Aligned_cols=64 Identities=23% Similarity=0.390 Sum_probs=55.3
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcC-----CCCCCCCCCccccCCCCCCCchhHHH
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG-----KNNTCPMTKQVLSSECELTPNHTLRR 69 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~-----~~~~CP~~~~~l~~~~~l~~n~~l~~ 69 (416)
.+++++.||||++.|.+|++++|||+||+.||.+|+... +...||.|++.+. ...+.+|..+++
T Consensus 8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~-~~~l~~n~~l~~ 76 (79)
T 2egp_A 8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS-FEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC-SSGGGTCSSSCC
T ss_pred hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC-HhhCCcCHHHHH
Confidence 467899999999999999999999999999999998752 2678999999998 777778776543
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=1.3e-14 Score=110.01 Aligned_cols=64 Identities=22% Similarity=0.402 Sum_probs=55.6
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcC----CCCCCCCCCccccCCCCCCCchhHHH
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG----KNNTCPMTKQVLSSECELTPNHTLRR 69 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~----~~~~CP~~~~~l~~~~~l~~n~~l~~ 69 (416)
++.+++.||||++.|.+|++++|||+||+.||.+|+... +...||.|++.+. ...+.+|..+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~~ 82 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP-FGNLKPNLHVAN 82 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC-TTCCEECSCCCS
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC-HHhCCcCHHHHH
Confidence 467889999999999999999999999999999999872 2678999999998 777878766544
No 59
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=7.8e-14 Score=102.16 Aligned_cols=58 Identities=19% Similarity=0.417 Sum_probs=50.6
Q ss_pred CCCCCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 4 IDVPTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
.++.+++.||||++.|.+|+++ +|||+||+.||.+|+.. ...||.|++.+. ..++..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVH-QTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCC-SSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccC-ccccccc
Confidence 3467889999999999999997 99999999999999976 679999999998 6655544
No 60
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-14 Score=109.16 Aligned_cols=64 Identities=17% Similarity=0.429 Sum_probs=55.9
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHc----CCCCCCCCCCccccCCCCCCCchhHHH
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA----GKNNTCPMTKQVLSSECELTPNHTLRR 69 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~----~~~~~CP~~~~~l~~~~~l~~n~~l~~ 69 (416)
.+++++.||||.+.|.+|++++|||+||+.||.+|+.. ++...||.|++.+. ...+.+|..+++
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~-~~~~~~n~~l~~ 82 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ-PENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC-SSSCCCSCCCCC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC-HHhcCccHHHHH
Confidence 46788999999999999999999999999999999976 33689999999998 778888876644
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.44 E-value=4.5e-14 Score=114.00 Aligned_cols=71 Identities=25% Similarity=0.489 Sum_probs=62.6
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
.+++++.||||+++|.+||+++|||+||+.||.+|+... ...||.|+..+. ...+.++..+++.+..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~~~~~~~l~~~i~~l~v~ 84 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILL-ENQLFPDNFAKREILSLMVK 84 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCC-GGGCEECHHHHHHHHTSEEE
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcC-HHhcccCHHHHHHHccceeE
Confidence 467889999999999999999999999999999999874 458999999998 77888999888888876544
No 62
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.9e-14 Score=100.56 Aligned_cols=54 Identities=11% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCC
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECE 60 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~ 60 (416)
.+++++.||||++.|.+|++++|||+||+.||.+|+... ...||.|++.+. ..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~ 64 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS-SPKCTACQESIV-KDK 64 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS-SCCCTTTCCCCC-TTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC-cCCCCCCCcCCC-hhh
Confidence 467889999999999999999999999999999999643 678999999987 443
No 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=2.2e-14 Score=115.61 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=61.4
Q ss_pred CCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhc
Q 014913 7 PTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLN 78 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~ 78 (416)
.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|++.+. ...+.+|..++++++.+....
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~-~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAW-IQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCS-CSSCCCCHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCc-cccccccHHHHHHHHHHHHHH
Confidence 4679999999999999999 9999999999999985 57999999997 889999999999999987754
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.43 E-value=2.4e-14 Score=115.14 Aligned_cols=70 Identities=23% Similarity=0.326 Sum_probs=59.6
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccC------CCCCCCchhHHHHHHHHHH
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSS------ECELTPNHTLRRLIQSWCT 76 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~------~~~l~~n~~l~~~i~~~~~ 76 (416)
..+++.||||+++|.+||+++|||+||+.||.+|+..+ ...||.|++.+.. ...+..|..+...++.|..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT-TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 45679999999999999999999999999999999754 6899999998861 2566788888888888763
No 65
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=102.51 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=50.9
Q ss_pred CCCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhH
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTL 67 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l 67 (416)
.+..+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.|++.+. ..+.+|..+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~--~~~~~~~~l 69 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTG--GIFNPAKEL 69 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCC--SCCEECHHH
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCcccc--ccCCcHHHH
Confidence 345678999999999999999999999999999999976 678999999885 455566443
No 66
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.43 E-value=6.2e-14 Score=120.25 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=61.5
Q ss_pred CCCcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHh
Q 014913 6 VPTFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTL 77 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~ 77 (416)
+.+++.||||+++|.+||++ +|||+||+.||.+|+..+ ...||.|+..+.....+.+|..+.++|..|...
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-NKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 44678999999999999987 999999999999999864 788999999986356789999999999988654
No 67
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.42 E-value=5.9e-14 Score=116.56 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=51.5
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHH
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWC 75 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~ 75 (416)
.+++.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|++.+. .. ..+..+...+..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR--KIECPICRKDIK-SK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCC-CE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc--CCcCCCCCCcCC-CC--CCccchhHHHHHHH
Confidence 356899999999999999999999999999999975 678999999886 32 23455555555544
No 68
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.41 E-value=1.2e-13 Score=110.50 Aligned_cols=69 Identities=20% Similarity=0.430 Sum_probs=58.9
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcC-CCCCCCCCCccccCCCCCCCchhHHHHHHHHHH
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG-KNNTCPMTKQVLSSECELTPNHTLRRLIQSWCT 76 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~ 76 (416)
.+.+.||||.+.|.+|++++|||+||+.||.+|+... +...||.|++.+. ...+.+|..+.++++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~-~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT-KRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC-TTTCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC-HhhcCccHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999863 2468999999998 7788888777777666654
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=98.60 Aligned_cols=52 Identities=25% Similarity=0.449 Sum_probs=46.4
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHc-CCCCCCCCCCcccc
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA-GKNNTCPMTKQVLS 56 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~-~~~~~CP~~~~~l~ 56 (416)
++++++.||||++.|.+|++++|||+||+.||.+|+.. .+...||.|++.+.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 36788999999999999999999999999999999973 23679999999887
No 70
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.2e-13 Score=95.48 Aligned_cols=47 Identities=26% Similarity=0.487 Sum_probs=42.0
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcC-CCCCCCCC
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAG-KNNTCPMT 51 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~-~~~~CP~~ 51 (416)
.+.+++.||||++.|.+|++++|||+||+.||.+|+... +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 367889999999999999999999999999999999852 36789987
No 71
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.37 E-value=4.2e-11 Score=106.44 Aligned_cols=192 Identities=17% Similarity=0.076 Sum_probs=154.7
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHH
Q 014913 135 SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRA 214 (416)
Q Consensus 135 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~ 214 (416)
..+.++.|+..|.+. ++.++..|+..|..+.. . .+++.|+.+|.+++..+|.
T Consensus 17 ~~~~~~~L~~~L~~~---------------~~~vR~~A~~~L~~~~~------------~-~~~~~L~~~l~~~~~~vr~ 68 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDD---------------SYYVRRAAAYALGKIGD------------E-RAVEPLIKALKDEDAWVRR 68 (211)
T ss_dssp CGGGHHHHHHHTTCS---------------SHHHHHHHHHHHHHHCC------------G-GGHHHHHHHTTCSCHHHHH
T ss_pred CHhHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhCC------------c-cHHHHHHHHHcCCCHHHHH
Confidence 347899999999876 58999999999986531 3 3899999999999999999
Q ss_pred HHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccc
Q 014913 215 YAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSL 294 (416)
Q Consensus 215 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~ 294 (416)
.|+.+|..+.. .+.++.|+.+|+++ ++.++..|+.+|.++.. .++++.|+.+|.+.
T Consensus 69 ~a~~aL~~~~~-----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-- 124 (211)
T 3ltm_A 69 AAADALGQIGD-----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-- 124 (211)
T ss_dssp HHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--
T ss_pred HHHHHHHhhCC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--
Confidence 99999988742 35789999999998 99999999999998753 35889999999887
Q ss_pred hhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 295 ERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 295 ~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
++.++..|+.+|..+.. ...++.|++++.+.+..++..|+.+|..+.. ..+++.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~ 180 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAME 180 (211)
T ss_dssp SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHH
Confidence 88999999999999843 3568889887766677899999999988853 24677888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhccCC
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHARAWKNS 403 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~~~~~~~ 403 (416)
.+++++ ++..|+.|...|..+.....++
T Consensus 181 ~~l~d~-~~~vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 181 KLAETG-TGFARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHHHHC-CHHHHHHHHHHHHC--------
T ss_pred HHHhCC-CHHHHHHHHHHHHhcCCCCCCC
Confidence 888764 8999999999999887754443
No 72
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.36 E-value=4.9e-11 Score=110.80 Aligned_cols=223 Identities=14% Similarity=0.085 Sum_probs=160.2
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.++.|+..|.+ ++..|..|+..|..+.. .++++.|+.+|.+. ++.++..|+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~---------------~~~vR~~A~~a 77 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK---------------NYIRRDIGAFI 77 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS---------------SHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC---------------CHHHHHHHHHH
Confidence 46788888863 56889999999988752 24689999999877 58899999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHH-HHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQ-IMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
|..+...... + . ..++.|.+ ++++++..+|..++++|.++...... .....++.|+.+|+++ ++.
T Consensus 78 L~~l~~~~~~----~---~-~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~-~~~ 143 (280)
T 1oyz_A 78 LGQIKICKKC----E---D-NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK-STN 143 (280)
T ss_dssp HHHSCCCTTT----H---H-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS-CHH
T ss_pred HHHhcccccc----c---h-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCC-CHH
Confidence 9888643221 1 1 14444543 45678999999999999998743211 1236789999999988 999
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHH
Q 014913 255 ASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKIL 334 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~ 334 (416)
++..|+.+|.++.. .++++.|+.++.+. +..++..|+.+|..+.... ...++.|++.+.
T Consensus 144 vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~ 202 (280)
T 1oyz_A 144 VRRATAFAISVIND----------KATIPLLINLLKDP--NGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202 (280)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhc
Confidence 99999999998653 35899999999887 7889999999998884321 245677777666
Q ss_pred hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 014913 335 RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLH 396 (416)
Q Consensus 335 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l 396 (416)
..+..++..|+.+|..+.. ..+++.|+..++++ ..|..|...|..+
T Consensus 203 d~~~~vR~~A~~aL~~~~~-------------~~~~~~L~~~l~d~---~vr~~a~~aL~~i 248 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD-------------KRVLSVLCDELKKN---TVYDDIIEAAGEL 248 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC-------------GGGHHHHHHHHTSS---SCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC-------------HhhHHHHHHHhcCc---cHHHHHHHHHHhc
Confidence 6667888888888877752 24666677777542 2556666655544
No 73
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.34 E-value=4.1e-13 Score=108.01 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=55.1
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCC-CCchhHHHHHHHHH
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECEL-TPNHTLRRLIQSWC 75 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l-~~n~~l~~~i~~~~ 75 (416)
+++++.||||.++|.+||+++|||+||+.||.+|+... ...||.|++.+. ..++ .++..+.+++..+.
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCF-PTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCC-GGGCBCCCHHHHHHHHHCE
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCC-HhhccccHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999874 578999999997 5554 44555666655443
No 74
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=5e-13 Score=95.68 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=47.1
Q ss_pred CcccCcCccc-cCCCc----eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 8 TFFLCPISLA-IMKDP----VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 8 ~~~~Cpic~~-~~~~P----v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
+++.||||++ +|.+| ++++|||+||+.||.+|+..+ ...||.|++.+. ..++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECGTPLR-KSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTCCCCS-SCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCCCccc-cccceee
Confidence 5688999999 99999 578999999999999998764 678999999997 6655443
No 75
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.33 E-value=7e-11 Score=104.96 Aligned_cols=189 Identities=18% Similarity=0.111 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 94 NKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 94 ~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
+++.++.|+..|.+ ++..|..|+..|..+.. .++++.|+.+|.++ ++.++..|
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~---------------~~~vr~~a 70 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE---------------DAWVRRAA 70 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---------------CHHHHHHH
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC---------------CHHHHHHH
Confidence 45778899999963 56999999998887632 36799999999876 58999999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+.+|..+.. . +.++.|+.+|+++++.+|..|+++|..+.. .+.++.|+.+|+++ +
T Consensus 71 ~~aL~~~~~------------~-~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~ 125 (211)
T 3ltm_A 71 ADALGQIGD------------E-RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-D 125 (211)
T ss_dssp HHHHHHHCC------------G-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-S
T ss_pred HHHHHhhCC------------H-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-C
Confidence 999987641 3 388999999999999999999999998842 25789999999988 9
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHH
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~ 332 (416)
+.++..|+.+|.++.. ..+++.|+.++.+. ++.++..|+.+|..+.. ..+++.|.++
T Consensus 126 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~ 182 (211)
T 3ltm_A 126 WFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG-----------ERVRAAMEKL 182 (211)
T ss_dssp HHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-----------hhHHHHHHHH
Confidence 9999999999999843 35789999999887 88999999999999843 3456778887
Q ss_pred HHhcChhhhHHHHHHHHHHhcCCC
Q 014913 333 ILRVSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 333 l~~~~~~~~~~a~~~L~~L~~~~~ 356 (416)
+.+.++.++..|..+|..+.....
T Consensus 183 l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 183 AETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHCCHHHHHHHHHHHHC------
T ss_pred HhCCCHHHHHHHHHHHHhcCCCCC
Confidence 777788999999999998887654
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.33 E-value=1.4e-10 Score=102.17 Aligned_cols=188 Identities=18% Similarity=0.100 Sum_probs=155.7
Q ss_pred CCCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchH
Q 014913 91 PPINKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPV 169 (416)
Q Consensus 91 ~~~~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 169 (416)
++......+.+++.|.+ ++..|..|+..|..+.. .+.++.|+.+|.+. ++.++
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~---------------~~~vr 62 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE---------------DAWVR 62 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---------------SHHHH
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC---------------CHHHH
Confidence 44667888999999973 57999999999887642 25699999999866 58899
Q ss_pred HHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc
Q 014913 170 DEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD 249 (416)
Q Consensus 170 ~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 249 (416)
..|+.+|..+. .. ..++.|+.+|.++++.+|..|+++|..+.. ..+++.|+.+|++
T Consensus 63 ~~a~~~L~~~~------------~~-~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d 118 (201)
T 3ltj_A 63 RAAADALGQIG------------DE-RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKD 118 (201)
T ss_dssp HHHHHHHHHHC------------CG-GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTC
T ss_pred HHHHHHHHhhC------------CH-HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcC
Confidence 99999998663 13 388999999999999999999999998742 2578999999998
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHH
Q 014913 250 HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIV 329 (416)
Q Consensus 250 ~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~L 329 (416)
+ ++.++..|+++|.++.. .++++.|+.++.+. ++.++..|+.+|..+.. ..+++.|
T Consensus 119 ~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~-----------~~~~~~L 174 (201)
T 3ltj_A 119 E-DWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG-----------ERVRAAM 174 (201)
T ss_dssp S-SHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-----------HHHHHHH
T ss_pred C-CHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-----------hhHHHHH
Confidence 8 99999999999998753 46899999999887 88999999999999832 3467788
Q ss_pred HHHHHhcChhhhHHHHHHHHHHh
Q 014913 330 SKKILRVSQVASERAVRILLSIS 352 (416)
Q Consensus 330 v~~l~~~~~~~~~~a~~~L~~L~ 352 (416)
.+++...+..++..|..+|..+.
T Consensus 175 ~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 175 EKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHH
Confidence 88777778889999999988765
No 77
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.32 E-value=2.3e-13 Score=112.97 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=55.7
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccC--------CCCCCCchhHHHHHHHHH
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSS--------ECELTPNHTLRRLIQSWC 75 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~--------~~~l~~n~~l~~~i~~~~ 75 (416)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+ ...||.|++.+.. ...+.++..+++.|....
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~ 104 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-PQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLP 104 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS-CEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSE
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC-CCCCCCCCCcccccccccccchhhhcccHHHHHHHcccc
Confidence 357889999999999999999999999999999999764 5689999986431 224557777766666443
No 78
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.32 E-value=7.7e-13 Score=113.96 Aligned_cols=70 Identities=26% Similarity=0.506 Sum_probs=61.1
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHH
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCT 76 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~ 76 (416)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+ ...||.|+..+. ...+.++..+.+.+..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~-~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILL-ENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCC-GGGCEECHHHHHHHHTSEE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcc-hhhhhhhHHHHHHHhhccc
Confidence 467889999999999999999999999999999999864 459999999998 7778888888887776543
No 79
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.32 E-value=7.8e-13 Score=96.46 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=50.0
Q ss_pred CCCCCcccCcCccccCCCc-------eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 4 IDVPTFFLCPISLAIMKDP-------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~P-------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
....+++.||||++.|.+| ++++|||+||+.||.+|+.. ...||.|++.+. ...+.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~ 69 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN-HKRYHPI 69 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCC-CCSCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccC-hhheeec
Confidence 4456789999999999999 88999999999999999987 579999999998 6666554
No 80
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.30 E-value=1.5e-12 Score=135.93 Aligned_cols=73 Identities=36% Similarity=0.574 Sum_probs=68.5
Q ss_pred CCCCCcccCcCccccCCCceecCCc-CcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhcc
Q 014913 4 IDVPTFFLCPISLAIMKDPVTVPTG-ITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNA 79 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~Pv~l~cg-ht~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~~ 79 (416)
.++|++|.|||++++|+|||++++| +||+|.+|++|+.. +.+||.+++++. ..++.||+.+++.|+.|+..+.
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~-~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLK-LEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCC-GGGCEECHHHHHHHHHHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCC-cccccccHHHHHHHHHHHHHHH
Confidence 6789999999999999999999997 79999999999986 569999999998 8999999999999999999865
No 81
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=90.15 Aligned_cols=47 Identities=21% Similarity=0.581 Sum_probs=41.7
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHc-CCCCCCCCC
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA-GKNNTCPMT 51 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~-~~~~~CP~~ 51 (416)
.+.+++.||||++.|.+|++++|||+||+.||.+|+.. .....||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999764 236889987
No 82
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.3e-12 Score=96.67 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=47.2
Q ss_pred CCCCCcccCcCccccCCC----ceecCCcCcccHHHHHHHHHcC-CCCCCCCCCcccc
Q 014913 4 IDVPTFFLCPISLAIMKD----PVTVPTGITYDRESIEKWLFAG-KNNTCPMTKQVLS 56 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~----Pv~l~cght~c~~ci~~~~~~~-~~~~CP~~~~~l~ 56 (416)
..+.+++.||||.+.|.+ |++++|||+||+.||.+|+... +...||.|++.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 346788999999999999 9999999999999999999863 2478999999886
No 83
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=95.46 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=44.7
Q ss_pred CCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.|++.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhC
Confidence 4577999999999999999999999999999999875 578999999886
No 84
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.28 E-value=2.7e-10 Score=100.33 Aligned_cols=186 Identities=18% Similarity=0.087 Sum_probs=154.5
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHH
Q 014913 135 SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRA 214 (416)
Q Consensus 135 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~ 214 (416)
..+..+.+++.|.++ ++.++..|+.+|..+.. . ..++.|+.+|.+++..+|.
T Consensus 12 ~~~~~~~~i~~L~~~---------------~~~vr~~A~~~L~~~~~------------~-~~~~~L~~~l~~~~~~vr~ 63 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDD---------------SYYVRRAAAYALGKIGD------------E-RAVEPLIKALKDEDAWVRR 63 (201)
T ss_dssp CHHHHHHHHHHTTCS---------------CHHHHHHHHHHHHHHCC------------G-GGHHHHHHHTTCSSHHHHH
T ss_pred CCcchHHHHHHhcCC---------------CHHHHHHHHHHHHhcCC------------h-hHHHHHHHHHcCCCHHHHH
Confidence 347789999999888 68999999999986541 2 3889999999999999999
Q ss_pred HHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccc
Q 014913 215 YAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSL 294 (416)
Q Consensus 215 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~ 294 (416)
.|+.+|..+.. ..+++.|+.+|.++ ++.++..|+++|.++.. ..+++.|+.+|.+.
T Consensus 64 ~a~~~L~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-- 119 (201)
T 3ltj_A 64 AAADALGQIGD-----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-- 119 (201)
T ss_dssp HHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--
T ss_pred HHHHHHHhhCC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--
Confidence 99999988742 25789999999998 99999999999998753 35889999999887
Q ss_pred hhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 295 ERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 295 ~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
++.++..|+.+|..+.. ...++.|++++.+.+..++..|+.+|..+.. ..+++.|.
T Consensus 120 ~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-------------~~~~~~L~ 175 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAME 175 (201)
T ss_dssp SHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHH
Confidence 88999999999998843 3578889887766677899999999998842 23678888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHH
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
.+++++ ++..|+.|...|..+.
T Consensus 176 ~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 176 KLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHhCC-CHHHHHHHHHHHHHHH
Confidence 888764 8999999999888654
No 85
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.23 E-value=3.6e-10 Score=104.93 Aligned_cols=224 Identities=9% Similarity=0.019 Sum_probs=164.0
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHH-HhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLAS-FVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
++.++.++..|.+ ++..|..|+..|..+........ ..++.|.. ++.+. ++.++..|
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~---------------~~~vr~~a 111 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDK---------------SACVRATA 111 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCS---------------CHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCC---------------CHHHHHHH
Confidence 4567888888863 46889999998887753222100 12333432 23333 58899999
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHIS 252 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 252 (416)
+.+|.++..... .. . . ..++.|+.+|+++++.+|..|+++|.++.. .++++.|+.+|+++ +
T Consensus 112 ~~aL~~l~~~~~---~~-~--~-~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~ 172 (280)
T 1oyz_A 112 IESTAQRCKKNP---IY-S--P-KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP-N 172 (280)
T ss_dssp HHHHHHHHHHCG---GG-H--H-HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS-S
T ss_pred HHHHHHHhccCC---cc-c--H-HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC-C
Confidence 999998863221 11 1 3 388899999999999999999999998753 24789999999998 9
Q ss_pred hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHH
Q 014913 253 QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKK 332 (416)
Q Consensus 253 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~ 332 (416)
..++..|+++|.++... ...+++.|+.+|.+. ++.++..|+.+|..+. +...++.|++.
T Consensus 173 ~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~ 231 (280)
T 1oyz_A 173 GDVRNWAAFAININKYD--------NSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK-----------DKRVLSVLCDE 231 (280)
T ss_dssp HHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT-----------CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC-----------CHhhHHHHHHH
Confidence 99999999999998532 134789999999887 8899999999999885 24678889986
Q ss_pred HHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 333 ILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 333 l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
+.. +.++..|+.+|..+.. ..+++.|..+++...++...+.+...|+
T Consensus 232 l~d--~~vr~~a~~aL~~i~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 232 LKK--NTVYDDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HTS--SSCCHHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred hcC--ccHHHHHHHHHHhcCc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 654 3488888888887753 2578999999976556666666665554
No 86
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=5.4e-12 Score=91.37 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=45.7
Q ss_pred CCCCCcccCcCccccCCCc-------eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 4 IDVPTFFLCPISLAIMKDP-------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~P-------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..+++++.||||++.|.+| ++++|||+||+.||.+|+.. ...||.|++.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3467889999999999998 88999999999999999987 579999998875
No 87
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=1.4e-11 Score=91.08 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=44.5
Q ss_pred CCCCCcccCcCccccC--CCceecC--CcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 4 IDVPTFFLCPISLAIM--KDPVTVP--TGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~--~~Pv~l~--cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++.+++.||||++.| .|++..+ |||+||+.|+.++|... ...||.|++.+.
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~-~~~CP~CR~~~~ 61 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-NGLCPACRKPYP 61 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS-CSBCTTTCCBCS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC-CCCCCCCCCccC
Confidence 3467889999999988 4566665 99999999999998754 789999999997
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=3.1e-12 Score=91.16 Aligned_cols=53 Identities=21% Similarity=0.438 Sum_probs=46.1
Q ss_pred CcccCcCccccCCCc-------eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCC
Q 014913 8 TFFLCPISLAIMKDP-------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTP 63 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P-------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~ 63 (416)
+++.||||++.|.+| ++++|||+||+.||.+|+.. ...||.|++.+. ..++.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~ 61 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN-HKRYHP 61 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCT-TTCEEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCC-ccceee
Confidence 468999999999998 78899999999999999987 679999999987 555443
No 89
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.4e-11 Score=91.44 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=47.7
Q ss_pred CCCCCcccCcCccccCCCc---eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 4 IDVPTFFLCPISLAIMKDP---VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 4 ~~~~~~~~Cpic~~~~~~P---v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
....+++.|+||++.|.+| ++++|||+||+.||.+|+.. ..+||.|++.+. ...+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLT-GQNTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCC-CSCSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccC-CcccCCC
Confidence 3456789999999999877 45699999999999999975 579999999997 5555443
No 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.12 E-value=1.2e-09 Score=117.41 Aligned_cols=276 Identities=15% Similarity=0.125 Sum_probs=190.8
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhH--Hh--hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRC--LE--SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~--i~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
+-++.++..+.+ ++..+..|+.+|..++.+.+..-.. +. -.+.+|.++++|++. ++.++.
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~---------------~~~vR~ 192 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS---------------SPKIRS 192 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS---------------SHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC---------------CHHHHH
Confidence 456777777753 4588889999999998764422110 00 124677777777755 588999
Q ss_pred HHHHHHHhcCCChhhh-hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc
Q 014913 171 EALSILCNLKISELGL-KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD 249 (416)
Q Consensus 171 ~A~~~L~~l~~~~~~~-~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 249 (416)
.|+.+|.++....... ...+ . ..++.+..++.+++.++|..|+++|..++........- .-.+.++.++.++++
T Consensus 193 ~A~~aL~~~~~~~~~~~~~~~---~-~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~-~l~~l~~~l~~~~~~ 267 (852)
T 4fdd_A 193 HAVACVNQFIISRTQALMLHI---D-SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-HMHNIVEYMLQRTQD 267 (852)
T ss_dssp HHHHHHHTTTTTTCHHHHTSH---H-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccHHHHHHH---H-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHccC
Confidence 9999999887553321 1222 3 38889999999999999999999999998653322111 123688899999988
Q ss_pred CCChHHHHHHHHHHHHhCCCCcchHHHHh--hCcHHHHHHHhh----------cc--c--------chhhhHHHHHHHHH
Q 014913 250 HISQQASKSALEVLVNICPWGRNRIKGVE--AGAVSILIDLLL----------DS--S--------LERRASEMILTVLD 307 (416)
Q Consensus 250 ~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--~G~v~~Lv~lL~----------~~--~--------~~~~~~~~a~~~L~ 307 (416)
. +..++..|+..+.+++.....+..+.. ...+|.|+..+. .+ . .+..++..|+.+|.
T Consensus 268 ~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~ 346 (852)
T 4fdd_A 268 Q-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALD 346 (852)
T ss_dssp S-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHH
Confidence 8 899999999999999976543332211 245677777762 11 0 01245778888998
Q ss_pred HHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHH
Q 014913 308 LLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKD 387 (416)
Q Consensus 308 ~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~ 387 (416)
.|+..... .+.. ..++.+.+.+.+.+...++.|+.+|.+++.+..+ ... . .-.++++.|+..++++ ++..|.
T Consensus 347 ~la~~~~~--~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~-~-~l~~~l~~l~~~l~d~-~~~Vr~ 418 (852)
T 4fdd_A 347 VLANVYRD--ELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMI-P-YLPELIPHLIQCLSDK-KALVRS 418 (852)
T ss_dssp HHHHHHGG--GGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHG-G-GHHHHHHHHHHHTTCS-SHHHHH
T ss_pred HHHHhccH--HHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHH-H-HHHHHHHHHHHHcCCC-CHHHHH
Confidence 88864321 2222 3456666666556778999999999999987642 111 1 2256789999999764 899999
Q ss_pred HHHHHHHHHHHhc
Q 014913 388 KAREVLKLHARAW 400 (416)
Q Consensus 388 ~A~~ll~~l~~~~ 400 (416)
.|...+..+..+.
T Consensus 419 ~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 419 ITCWTLSRYAHWV 431 (852)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888854
No 91
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.11 E-value=4.2e-11 Score=86.37 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=42.1
Q ss_pred CcccCcCccccCCCc-eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDP-VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P-v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++..||||++.+.+| +.++|||+||+.||.+|+.. ...||.|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhH
Confidence 456899999999997 67899999999999999986 579999998876
No 92
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.11 E-value=2.6e-10 Score=119.36 Aligned_cols=196 Identities=13% Similarity=0.066 Sum_probs=146.1
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH-HHhccCCChHHHHHHHHHHHHhCCC--Ccch
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI-QVLHDHISQQASKSALEVLVNICPW--GRNR 273 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv-~lL~~~~~~~~~~~A~~aL~nLs~~--~~n~ 273 (416)
.|.++++.|++++++.|..|+++|.+|+.+....+.+. ..|+|.+++ .+|.+. +.+++..|+++|+||+.. .+.+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~-~~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLL-REQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHH-HTTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHH-HcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHH
Confidence 67788899999999999999999999998655555544 447777765 567777 999999999999999865 4688
Q ss_pred HHHHhhCcHHHHHHHhhcccc-------------------hhhhHHHHHHHHHHHcCC-hhhHHHHHhcCCchHHHHHHH
Q 014913 274 IKGVEAGAVSILIDLLLDSSL-------------------ERRASEMILTVLDLLCQC-AEGRAELLKHGAGLAIVSKKI 333 (416)
Q Consensus 274 ~~i~~~G~v~~Lv~lL~~~~~-------------------~~~~~~~a~~~L~~La~~-~~~~~~i~~~~~~v~~Lv~~l 333 (416)
..+++.|++++|..++..... -..+.+.++.+|++||.. .+....+.. .++++.|+..|
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~~L 191 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLFRL 191 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHHHH
Confidence 899999999999999964200 013556788999999974 444556666 79999999988
Q ss_pred HhcC---hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHH---HHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 334 LRVS---QVASERAVRILLSISKFSATNSVLQEMLQIGVVA---KLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 334 ~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~---~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
...+ ......|+.+|+.|+..+. ...+.+.+.|... .|+.+... +...|.-++.+|.++...
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~--~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNL--KVGQAITDDQETHVYDVLLKLATG--TDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCH--HHHHHHHhcchHHHHHHHHHHhcC--CcHHHHHHHHHHHhHhhh
Confidence 6643 4688999999999998765 4777888766433 33333332 334455666777776543
No 93
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=84.16 Aligned_cols=50 Identities=24% Similarity=0.557 Sum_probs=42.9
Q ss_pred CCCCcccCcCccccCC---CceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 5 DVPTFFLCPISLAIMK---DPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~---~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+..++..|+||++.|. +++.++|||.||+.||.+|+.. ..+||.|++.+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIE 62 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCcccc
Confidence 4566789999999884 4678899999999999999987 467999999886
No 94
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.09 E-value=6.1e-11 Score=81.62 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=41.6
Q ss_pred CcccCcCccccCCC----ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKD----PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~----Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++..||||++.|.+ +++++|||.||+.||.+|+.. ...||.|++.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 46789999999977 778899999999999999987 478999998764
No 95
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.9e-11 Score=84.49 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=40.5
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+++.||||++.|.+|++++|||+||+.||.+| ...||.|++.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC-----CCCCCcCCcEee
Confidence 467899999999999999999999999999772 568999998876
No 96
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.06 E-value=7.6e-11 Score=81.14 Aligned_cols=49 Identities=24% Similarity=0.570 Sum_probs=42.7
Q ss_pred CCCcccCcCccccCCC---ceecC-CcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKD---PVTVP-TGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~---Pv~l~-cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+.++..|+||++.|.+ ++.++ |||.||+.||.+|+.. ..+||.|++.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 4567899999999998 78886 9999999999999975 678999988763
No 97
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2.9e-11 Score=87.76 Aligned_cols=49 Identities=18% Similarity=0.435 Sum_probs=44.5
Q ss_pred CCCCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 5 DVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++.+++.||||++.+.+ ++++|||+||+.||.+|+.. ...||.|++.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTT
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC--cCcCCCcCCccc
Confidence 45778999999999999 99999999999999999874 689999999887
No 98
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=84.61 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=43.9
Q ss_pred CCCCcccCcCccccCCCceec---CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 5 DVPTFFLCPISLAIMKDPVTV---PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l---~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++.++..|+||++.|.+|..+ +|||.||+.||.+|+.. ..+||.|++.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVL 63 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCS
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCcccc
Confidence 456788999999999988654 99999999999999987 468999999886
No 99
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=4.8e-11 Score=98.18 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=46.1
Q ss_pred CCcccCcCccccCCCc-------eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCC
Q 014913 7 PTFFLCPISLAIMKDP-------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECEL 61 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~P-------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l 61 (416)
++++.||||++.|.+| ++++|||+||+.||.+|+.. ..+||.|++.+. ...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN-HKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCT-TTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCc-cccc
Confidence 5789999999999999 89999999999999999976 569999999987 4443
No 100
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=89.04 Aligned_cols=49 Identities=20% Similarity=0.496 Sum_probs=43.3
Q ss_pred CCCcccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..++..|+||++.|.+ +++++|||.||..||.+|+.. +.+||.|++.+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 3467889999999988 888999999999999999975 579999998875
No 101
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.01 E-value=4.8e-09 Score=112.64 Aligned_cols=271 Identities=14% Similarity=0.112 Sum_probs=182.1
Q ss_pred HHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
-++.++..+. .++..|..|+.+|..++...+..-.... .+.++.++.++.+. +..++..|+..
T Consensus 216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~---------------~~~vr~~a~e~ 279 (852)
T 4fdd_A 216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ---------------DENVALEACEF 279 (852)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS---------------SHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC---------------cHHHHHHHHHH
Confidence 3444555553 3568999999999999987654322111 25788888888765 57899999999
Q ss_pred HHhcCCChhhhhhhhcc-ccCCccHHHHHHH-----------hc-----------CCHHHHHHHHHHHHHhhcccCchhh
Q 014913 176 LCNLKISELGLKSLVMG-RNGTFVDSLTQIM-----------QR-----------GTYESRAYAVLLLKSMLEVAEPMQL 232 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~-~~G~~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~ 232 (416)
+..++.... .++.+.. .. ..++.++..+ .. .+..+|..|+.+|..++..... .
T Consensus 280 l~~l~~~~~-~~~~~~~~~~-~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~ 355 (852)
T 4fdd_A 280 WLTLAEQPI-CKDVLVRHLP-KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--E 355 (852)
T ss_dssp HHHHTTSTT-HHHHHTTTHH-HHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHhcchh-HHHHHHHHHH-HHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--H
Confidence 999886542 2233320 01 2455555555 22 1224688899999999865331 2
Q ss_pred HhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 233 ISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 233 ~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
+ . ...++.+..++++. ++..|+.|+++|.+++........-.-.+++|.|+.++.+. ++.++..|+.+|.+++..
T Consensus 356 ~-~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 356 L-L-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KALVRSITCWTLSRYAHW 430 (852)
T ss_dssp G-H-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTHHH
T ss_pred H-H-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 2 2 35888899999888 99999999999999998665322222356899999999887 889999999999999864
Q ss_pred hhh--HHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHH
Q 014913 313 AEG--RAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAR 390 (416)
Q Consensus 313 ~~~--~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~ 390 (416)
-.. ..... ...++.|++.|...+..+++.|+.+|.+++...+. .+... -.+.++.|+.+++.. ..+....+.
T Consensus 431 ~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~-~l~~~--l~~ll~~L~~~l~~~-~~~~~~~~~ 504 (852)
T 4fdd_A 431 VVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-ELVPY--LAYILDTLVFAFSKY-QHKNLLILY 504 (852)
T ss_dssp HHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG-GGGGG--HHHHHHHHHHHHHHC-CHHHHHHHH
T ss_pred hccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH-hhHhH--HHHHHHHHHHHHHHh-ChHHHHHHH
Confidence 211 11111 24567777766666779999999999999975442 12111 146778888888654 455555555
Q ss_pred HHHHHHHH
Q 014913 391 EVLKLHAR 398 (416)
Q Consensus 391 ~ll~~l~~ 398 (416)
..+..+..
T Consensus 505 ~ai~~l~~ 512 (852)
T 4fdd_A 505 DAIGTLAD 512 (852)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
No 102
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.01 E-value=2e-10 Score=91.92 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=43.2
Q ss_pred CCCcccCcCccccCCCce------------------ecCCcCcccHHHHHHHHHcC---CCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIMKDPV------------------TVPTGITYDRESIEKWLFAG---KNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~Pv------------------~l~cght~c~~ci~~~~~~~---~~~~CP~~~~~l~ 56 (416)
.+.+..||||++.|.+|+ +++|||.||+.||.+|+... ...+||.|+..+.
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 345679999999998876 68999999999999999641 2679999999886
No 103
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=85.15 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=42.9
Q ss_pred CCcccCcCccccCCCc---eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDP---VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~P---v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++..|+||++.|.++ +.++|||.||+.||.+|+.. +.+||.|++.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCC
Confidence 4567899999999988 67899999999999999987 578999998876
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.97 E-value=5.5e-09 Score=109.36 Aligned_cols=196 Identities=12% Similarity=0.062 Sum_probs=139.3
Q ss_pred cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHH-HHHHhcCCHHHHHHH
Q 014913 138 AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSL-TQIMQRGTYESRAYA 216 (416)
Q Consensus 138 ~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~L-v~lL~~~~~~~~~~a 216 (416)
.|.++++.|+++ +++.|..|+.+|.+|+.+.+..+.++. . ++|..+ ..+|...+.++|+.|
T Consensus 35 ~i~Pll~~L~S~---------------~~~~r~~A~~al~~l~~~~~~~~l~~~--~-~~v~~ll~~lL~D~~~~Vr~~A 96 (684)
T 4gmo_A 35 KILPVLKDLKSP---------------DAKSRTTAAGAIANIVQDAKCRKLLLR--E-QVVHIVLTETLTDNNIDSRAAG 96 (684)
T ss_dssp TTHHHHHHHSSS---------------CCSHHHHHHHHHHHHTTSHHHHHHHHH--T-THHHHHHHTTTTCSCHHHHHHH
T ss_pred hHHHHHHHcCCC---------------CHHHHHHHHHHHHHHHcCcHHHHHHHH--c-CCHHHHHHHHcCCCCHHHHHHH
Confidence 356677889887 589999999999999987766555555 4 377665 456888899999999
Q ss_pred HHHHHHhhcccCch-hhHhhhhhHHHHHHHHhccCC-------------C-------hHHHHHHHHHHHHhCCCCc-chH
Q 014913 217 VLLLKSMLEVAEPM-QLISLRQELFVEVIQVLHDHI-------------S-------QQASKSALEVLVNICPWGR-NRI 274 (416)
Q Consensus 217 ~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~-------------~-------~~~~~~A~~aL~nLs~~~~-n~~ 274 (416)
+++|.||+....+. ...+...|++++|..+|+... . .....+++.+|++||...+ ...
T Consensus 97 ~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~ 176 (684)
T 4gmo_A 97 WEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHE 176 (684)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999764322 222345599999999986310 0 1234567889999987554 666
Q ss_pred HHHhhCcHHHHHHHhhccc-chhhhHHHHHHHHHHHcCChhh-HHHHHhcCCchHHH--HHHHHhcChhhhHHHHHHHHH
Q 014913 275 KGVEAGAVSILIDLLLDSS-LERRASEMILTVLDLLCQCAEG-RAELLKHGAGLAIV--SKKILRVSQVASERAVRILLS 350 (416)
Q Consensus 275 ~i~~~G~v~~Lv~lL~~~~-~~~~~~~~a~~~L~~La~~~~~-~~~i~~~~~~v~~L--v~~l~~~~~~~~~~a~~~L~~ 350 (416)
.+.+.|+++.|+..|.+.. ...+++..|+.+|..|+..... ...+.. .+....+ +..+...+...+..++++|+|
T Consensus 177 ~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~~~~~~~ll~~~~~~~~~~~la~giL~N 255 (684)
T 4gmo_A 177 AVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQETHVYDVLLKLATGTDPRAVMACGVLHN 255 (684)
T ss_dssp HHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCSSCHHHHHHHHHHSSCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cchHHHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence 7888999999999996531 1357899999999999986544 444444 3433222 112334455667788899999
Q ss_pred Hh
Q 014913 351 IS 352 (416)
Q Consensus 351 L~ 352 (416)
+.
T Consensus 256 i~ 257 (684)
T 4gmo_A 256 VF 257 (684)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 105
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.93 E-value=5.1e-08 Score=99.50 Aligned_cols=253 Identities=11% Similarity=0.097 Sum_probs=166.6
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK 187 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 187 (416)
++.+|..|+..|..++..... .......+|.+..++.++ +..++..|+.+|..++..-..
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~---------------~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDE---------------QDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCS---------------CHHHHTTHHHHHHHHHHHSCH--
T ss_pred CHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCC---------------cHHHHHHHHHHHHHHHHhCCH--
Confidence 568999999999999875432 122346788888888766 478999999999887643221
Q ss_pred hhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhC
Q 014913 188 SLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNIC 267 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 267 (416)
.... . ..++.+..++++.+..+|..|+.+|..++...... . .....++.++.+++++ ++.++..|+.+|..++
T Consensus 237 ~~~~--~-~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~ 309 (588)
T 1b3u_A 237 EDLE--A-LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--I-TKTDLVPAFQNLMKDC-EAEVRAAASHKVKEFC 309 (588)
T ss_dssp HHHH--H-HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--H-HHHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHH--H-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--c-chhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHH
Confidence 1122 2 38888889999899999999999999998643221 1 1235789999999988 8999999999999987
Q ss_pred CCCc--chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHH
Q 014913 268 PWGR--NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAV 345 (416)
Q Consensus 268 ~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~ 345 (416)
..-. .+....-...+|.+..++.+. +..++..++.+|..++..-.. .... ...++.+...+...++.++..++
T Consensus 310 ~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~p~l~~~l~d~~~~Vr~~a~ 384 (588)
T 1b3u_A 310 ENLSADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGK-DNTI--EHLLPLFLAQLKDECPEVRLNII 384 (588)
T ss_dssp HTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCH-HHHH--HHTHHHHHHHHTCSCHHHHHHHH
T ss_pred HHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhH-hHHH--HHHHHHHHHHhCCCchHHHHHHH
Confidence 5432 222223356788888888877 778888888888888653211 1111 23566677655544557777777
Q ss_pred HHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 346 RILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 346 ~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
.+|..++...+... .....++.|..++.+ .+.+.|..+...+..+.+
T Consensus 385 ~~l~~l~~~~~~~~-----~~~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 385 SNLDCVNEVIGIRQ-----LSQSLLPAIVELAED-AKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp TTCHHHHHHSCHHH-----HHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHH-----HHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHH
Confidence 77766665433111 112344444444433 244555555555544444
No 106
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.93 E-value=2e-10 Score=84.13 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=40.0
Q ss_pred CCcccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+++.|+||++.+.+||+++|||+ ||+.|+.+| ..||.|++.+.
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCcc
Confidence 356899999999999999999999 999999887 57999999886
No 107
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.91 E-value=3.7e-08 Score=100.51 Aligned_cols=264 Identities=10% Similarity=0.027 Sum_probs=179.7
Q ss_pred HHHHHHHh-cCcHHHHHHHHHHHHHHhcChh-hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 99 TKLLNEAA-KSPQMQIKCLKKLRSIAAENET-NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 99 ~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
+.++..+. .++++|..|+..|..++..... .+....-...+|.+..++.+. ++.++..++.+|
T Consensus 284 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~---------------~~~vR~~a~~~l 348 (588)
T 1b3u_A 284 PAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA---------------NQHVKSALASVI 348 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS---------------CHHHHHHHHTTG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC---------------CHHHHHHHHHHH
Confidence 34444453 2457888888888888764321 121122345678888888766 588999999999
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQAS 256 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 256 (416)
..++..-.. .... . ..++.+..+|+..+.++|..++.+|..+........ .....+|.|..++++. ++.++
T Consensus 349 ~~l~~~~~~--~~~~--~-~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~-~~~vr 419 (588)
T 1b3u_A 349 MGLSPILGK--DNTI--E-HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDA-KWRVR 419 (588)
T ss_dssp GGGHHHHCH--HHHH--H-HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCS-SHHHH
T ss_pred HHHHHHhhH--hHHH--H-HHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhcCC-CchHH
Confidence 988742211 1222 2 378889999999899999999999998875432211 1236889999999888 89999
Q ss_pred HHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc
Q 014913 257 KSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 257 ~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~ 336 (416)
..++.+|..++..-... +.....+|.++.+|.+. +..+++.|+.+|..++..-... ... ...+|.|++++...
T Consensus 420 ~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~-~~~--~~llp~l~~~~~~~ 492 (588)
T 1b3u_A 420 LAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGKE-WAH--ATIIPKVLAMSGDP 492 (588)
T ss_dssp HHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCHH-HHH--HHTHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCch-hHH--HHHHHHHHHHhhCC
Confidence 99999999886422111 12234678888888877 7889999999999997643221 122 24567777644444
Q ss_pred ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 337 SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 337 ~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
+...+..++.++..++..- .........++.|+.+++.+ ++..|..+...|..+.+.
T Consensus 493 ~~~~R~~a~~~l~~l~~~~-----~~~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVC-----GQDITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----HHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHH
Confidence 5678888888888887532 22223345777888877653 788888888888877764
No 108
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.91 E-value=2.1e-08 Score=99.17 Aligned_cols=280 Identities=14% Similarity=0.097 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhc---CcHHHHHHHHHHHHHHhcC-hhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 96 AQITKLLNEAAK---SPQMQIKCLKKLRSIAAEN-ETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 96 ~~i~~lv~~l~~---~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+-++.++..+.+ ++..+..|+..|..++.+. +..-.... ...++.++..|.+.. .++.++..
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~-------------~~~~vr~~ 193 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE-------------PSNNVKLA 193 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC-------------CCHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC-------------CCHHHHHH
Confidence 567777888763 5688899999999999864 21111111 247788888887651 13789999
Q ss_pred HHHHHHhcCCChh-hhh-hhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhh-hHHHHHHHHhc
Q 014913 172 ALSILCNLKISEL-GLK-SLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQ-ELFVEVIQVLH 248 (416)
Q Consensus 172 A~~~L~~l~~~~~-~~~-~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~ 248 (416)
|+.++.++...-. ... .... . -.++.+...+.+++.+++..++.+|..++........- .-. +.++.++..++
T Consensus 194 a~~~l~~~~~~~~~~~~~~~~~--~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~ 269 (462)
T 1ibr_B 194 ATNALLNSLEFTKANFDKESER--H-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMK 269 (462)
T ss_dssp HHHHHHHHTTTTHHHHTSHHHH--H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHH--H-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 9999988653221 111 1111 1 14666677777889999999999999998653221111 112 67888888888
Q ss_pred cCCChHHHHHHHHHHHHhCCCC------------------cchHHHHh---hCcHHHHHHHhhcc-----cchhhhHHHH
Q 014913 249 DHISQQASKSALEVLVNICPWG------------------RNRIKGVE---AGAVSILIDLLLDS-----SLERRASEMI 302 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~------------------~n~~~i~~---~G~v~~Lv~lL~~~-----~~~~~~~~~a 302 (416)
+. +..++..|+..+.+++... .....+++ ...+|.|++.|... ..+..++..|
T Consensus 270 ~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 270 SD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp CS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence 87 8899999999988887532 00111221 34677777777542 0133678889
Q ss_pred HHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCc
Q 014913 303 LTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNS 382 (416)
Q Consensus 303 ~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~ 382 (416)
+.+|..|+..-.. .+.. ..++.+.+.+.+.+...++.|+.+|..++.+...+.+...+ ..+++.|+..|.+. .
T Consensus 349 ~~~L~~l~~~~~~--~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~-~ 421 (462)
T 1ibr_B 349 GVCLMLLATCCED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP-S 421 (462)
T ss_dssp HHHHHHHHHHTTT--THHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCS-C
T ss_pred HHHHHHHHHhccH--HHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCC-C
Confidence 9999998764221 2222 34566666555556689999999999999765411111111 57899999999764 7
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 014913 383 MKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 383 ~~~k~~A~~ll~~l~~~~~ 401 (416)
+..|..|..+|..+.....
T Consensus 422 ~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 422 VVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999998654
No 109
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.83 E-value=2e-09 Score=102.60 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=43.1
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
...|+||.+.+.+|+.++|||+||..||.+|+... ...||.|++.+.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~-~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-GQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT-CSBCTTTCCBCC
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC-CCCCCCCCCccC
Confidence 47999999999999999999999999999999843 679999999886
No 110
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=8.7e-10 Score=90.53 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=47.0
Q ss_pred CCcccCcCccccCCCc-------eecCCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCCCC
Q 014913 7 PTFFLCPISLAIMKDP-------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTP 63 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~P-------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~ 63 (416)
++.+.||||++.|.+| +.++|||+||..||.+|+.. ..+||.|+..+. ..++.+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~-~~~~~~ 130 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN-HKRYHP 130 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCC-GGGEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCC-hhccee
Confidence 4678999999999998 88999999999999999987 579999999987 555544
No 111
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.9e-09 Score=78.19 Aligned_cols=44 Identities=27% Similarity=0.377 Sum_probs=39.1
Q ss_pred CCcccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+++.|+||++.+.+||+++|||+ ||+.|+.+ ...||.|++.+.
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA------VDKCPMCYTVIT 67 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH------CSBCTTTCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC------CCCCccCCceec
Confidence 356789999999999999999999 99999964 368999999886
No 112
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.77 E-value=4.1e-09 Score=74.71 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=43.6
Q ss_pred CCCCcccCcCccccCCCceec--CCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 5 DVPTFFLCPISLAIMKDPVTV--PTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l--~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+-+++..|+||++.+++++.+ +|||. ||..|+.+|+.. ...||.|++.+.
T Consensus 4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 445678999999999999987 99999 899999999975 568999998875
No 113
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.77 E-value=2.7e-07 Score=94.91 Aligned_cols=264 Identities=17% Similarity=0.123 Sum_probs=177.5
Q ss_pred HHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 014913 99 TKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILC 177 (416)
Q Consensus 99 ~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~ 177 (416)
+.+.+.+. .++.+|..|+.+|.++...+++ .+.+.+.++.|..+|.+. ++.++..|+.+|.
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~---------------d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS---------------NPMVVANAVAALS 185 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS---------------CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC---------------ChhHHHHHHHHHH
Confidence 33555554 3679999999999999986553 334468899999999866 5899999999999
Q ss_pred hcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHH
Q 014913 178 NLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASK 257 (416)
Q Consensus 178 ~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~ 257 (416)
+++....... .+.-.. ..+..|+..|...++-.+.....+|..++..++ . .....++.+..+|++. +..++.
T Consensus 186 ~i~~~~~~~~-~~~l~~-~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~--~---~~~~~l~~l~~~l~~~-~~~V~~ 257 (591)
T 2vgl_B 186 EISESHPNSN-LLDLNP-QNINKLLTALNECTEWGQIFILDCLSNYNPKDD--R---EAQSICERVTPRLSHA-NSAVVL 257 (591)
T ss_dssp HHTTSCCSCC-SCCCHH-HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH--H---HHHHHHHHHTTCSCSS-TTHHHH
T ss_pred HHHhhCCCcc-chhccH-HHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh--H---HHHHHHHHHHHHHcCC-ChHHHH
Confidence 9987654221 111013 268888888888888888888888877764321 1 1236888999999988 899999
Q ss_pred HHHHHHHHhCC----CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC-hh------------------
Q 014913 258 SALEVLVNICP----WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC-AE------------------ 314 (416)
Q Consensus 258 ~A~~aL~nLs~----~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~-~~------------------ 314 (416)
.|+++|..+.. +++....+. ..++++|+.++. . ++.++..|+.+|..++.. ++
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~--d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~ 333 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-G--EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIY 333 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S--CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-C--CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHH
Confidence 99999999974 223333332 346788887765 4 678888888888887641 11
Q ss_pred hHHHHH------hcCCchHHHHHHHH----hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHH
Q 014913 315 GRAELL------KHGAGLAIVSKKIL----RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMK 384 (416)
Q Consensus 315 ~~~~i~------~~~~~v~~Lv~~l~----~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~ 384 (416)
-|.... .+...+..++..|. ..+...+..++.++..++..... . ....++.|+.+++.. .+.
T Consensus 334 Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~-----~~~~v~~Ll~ll~~~-~~~ 405 (591)
T 2vgl_B 334 VKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--S-----AERCVSTLLDLIQTK-VNY 405 (591)
T ss_dssp HHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--H-----HHHHHHHHHHHHHTC-CHH
T ss_pred HHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--H-----HHHHHHHHHHHHccc-chH
Confidence 111111 11334454554444 34567888888899888876531 1 135778888988765 455
Q ss_pred HHHHHHHHHHHHHHhc
Q 014913 385 TKDKAREVLKLHARAW 400 (416)
Q Consensus 385 ~k~~A~~ll~~l~~~~ 400 (416)
.++.+...++.+-+.+
T Consensus 406 v~~e~i~~l~~ii~~~ 421 (591)
T 2vgl_B 406 VVQEAIVVIRDIFRKY 421 (591)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHC
Confidence 5555666666665543
No 114
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.76 E-value=1.5e-07 Score=96.81 Aligned_cols=261 Identities=11% Similarity=0.114 Sum_probs=180.0
Q ss_pred HHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
....+++.+.+ +...|.-+...+..++..+++.. .-++..|.+-|.+. ++.++..|+.+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~---------------n~~ir~~AL~~ 109 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP---------------NPLIRALAVRT 109 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS---------------SHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC---------------CHHHHHHHHHH
Confidence 35566665543 45777777777777777554332 12356666667665 58899999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQA 255 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 255 (416)
|+++.. ..+.. ..++.+.++|.+.++.+|..|+.+|.++...... .....+.++.|..+|.+. ++.+
T Consensus 110 L~~i~~-----~~~~~----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-d~~V 176 (591)
T 2vgl_B 110 MGCIRV-----DKITE----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-NPMV 176 (591)
T ss_dssp HHTCCS-----GGGHH----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-CHHH
T ss_pred HHcCCh-----HHHHH----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-ChhH
Confidence 998862 22332 2777899999999999999999999999875332 223358999999999988 9999
Q ss_pred HHHHHHHHHHhCCCCcch-HHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHH
Q 014913 256 SKSALEVLVNICPWGRNR-IKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKIL 334 (416)
Q Consensus 256 ~~~A~~aL~nLs~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~ 334 (416)
+.+|+.+|..++...... ..-...+.++.|+..+.+. ++-.+...+.+|..++..+... . ...++.+...+.
T Consensus 177 ~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~~~~~~~---~--~~~l~~l~~~l~ 249 (591)
T 2vgl_B 177 VANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--TEWGQIFILDCLSNYNPKDDRE---A--QSICERVTPRLS 249 (591)
T ss_dssp HHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHTSCCCSHHH---H--HHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC--CchHHHHHHHHHHHhCCCChHH---H--HHHHHHHHHHHc
Confidence 999999999998765422 1112234677888888776 6777778888888887543211 1 133455555555
Q ss_pred hcChhhhHHHHHHHHHHhcCC-CChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 335 RVSQVASERAVRILLSISKFS-ATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 335 ~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
+.+..+...|+.++..+...- .+++..+.+. ..+.+.|+.++. .++..|..|...|..+....
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhC
Confidence 567788999999999987532 1112233322 345677777664 47889999999888887753
No 115
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.8e-09 Score=83.09 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=49.6
Q ss_pred CCcccCcCccccCCCceec---CCcCcccHHHHHHHHHc----C--CCCCCCC--CCcc--ccCCCCCCCchhHHHHHHH
Q 014913 7 PTFFLCPISLAIMKDPVTV---PTGITYDRESIEKWLFA----G--KNNTCPM--TKQV--LSSECELTPNHTLRRLIQS 73 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l---~cght~c~~ci~~~~~~----~--~~~~CP~--~~~~--l~~~~~l~~n~~l~~~i~~ 73 (416)
.+.+.||||.+.+.+|+++ +|||+||+.|+.+||.. + ....||. |+.. +. ...+ .+....+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~-~~~i-~~ll~~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ-ENEI-ECMVAAEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEEC-HHHH-HHHSCHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccC-HHHH-HHHCCHHHHHH
Confidence 3578999999999999865 79999999999999874 2 1358999 9887 54 2222 22223556666
Q ss_pred HHHh
Q 014913 74 WCTL 77 (416)
Q Consensus 74 ~~~~ 77 (416)
|...
T Consensus 81 y~~~ 84 (94)
T 1wim_A 81 YKKL 84 (94)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 116
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=6.2e-09 Score=77.58 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=39.8
Q ss_pred CcccCcCccccCCC--------------ceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKD--------------PVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~--------------Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++-.|+||++.|.+ ++.+ +|||.|++.||.+|+.. +.+||.|++.+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcc
Confidence 45679999999987 4555 69999999999999986 569999998875
No 117
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.69 E-value=1.2e-06 Score=90.49 Aligned_cols=250 Identities=10% Similarity=0.057 Sum_probs=166.1
Q ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 98 ITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 98 i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
++.+.+.|. .++.+|.+|+.++.++...+++..+ +.++.+..+|.+. ++.++..|+.+|
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~---------------d~~V~~~Al~~L 203 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK---------------NHGVLHTSVVLL 203 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC---------------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC---------------CHhHHHHHHHHH
Confidence 344445554 4679999999999999887664322 5677777888765 589999999999
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHHHhc---------------CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQIMQR---------------GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFV 241 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 241 (416)
..++..+......+. ..++.++++|.. .++-.+.....+|..++..+... ....++
T Consensus 204 ~~i~~~~~~~~~~~~----~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~ 274 (618)
T 1w63_A 204 TEMCERSPDMLAHFR----KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----SEAMND 274 (618)
T ss_dssp HHHCCSHHHHHHHHH----TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHH
T ss_pred HHHHHhChHHHHHHH----HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHH
Confidence 999876543322333 378888888763 37888888889998887543211 112344
Q ss_pred HHHHHhc------cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh
Q 014913 242 EVIQVLH------DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG 315 (416)
Q Consensus 242 ~Lv~lL~------~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~ 315 (416)
.|..+++ +. +..+.-.|++++.++...+ .+.+ .++..|..+|.+. ++.++..|+.+|..++...
T Consensus 275 ~L~~l~~~~~~~~~~-~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~~~--d~~vr~~aL~~L~~i~~~~-- 344 (618)
T 1w63_A 275 ILAQVATNTETSKNV-GNAILYETVLTIMDIKSES----GLRV-LAINILGRFLLNN--DKNIRYVALTSLLKTVQTD-- 344 (618)
T ss_dssp HHHHHHHTSCCSSTH-HHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHTCS--STTTHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhccccccch-HHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHhCC--CCchHHHHHHHHHHHHhhC--
Confidence 5555543 22 4477778888888875422 2222 4678888888876 7888999998888887632
Q ss_pred HHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 014913 316 RAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKL 395 (416)
Q Consensus 316 ~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~ 395 (416)
..++. .....++..+...+..++..|+.+|..++.... ... .+..|+..+... ++..|+.+...+..
T Consensus 345 -p~~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 345 -HNAVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRG-----MMKELLYFLDSC-EPEFKADCASGIFL 411 (618)
T ss_dssp -HHHHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHH
T ss_pred -HHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHH
Confidence 22333 234566665555566888888888888887543 122 245666666553 67777777777777
Q ss_pred HHHh
Q 014913 396 HARA 399 (416)
Q Consensus 396 l~~~ 399 (416)
+...
T Consensus 412 la~k 415 (618)
T 1w63_A 412 AAEK 415 (618)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 7663
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.68 E-value=9.6e-09 Score=72.50 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred CcccCcCccccCCCceec--CCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTV--PTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l--~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+..|+||++.++|++++ +|||. ||..|+.+|+.. ...||.|++.+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 456899999999999988 99998 999999999875 478999999875
No 119
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.64 E-value=8.8e-07 Score=94.62 Aligned_cols=263 Identities=9% Similarity=0.033 Sum_probs=172.1
Q ss_pred CcHHHHHHHHHHHHHHhcCh-h-hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhh
Q 014913 108 SPQMQIKCLKKLRSIAAENE-T-NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELG 185 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~-~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~ 185 (416)
++..|..|+.+|..++.... . ....+ ...++.|+..+.+. ++.++..++++|..++..-..
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~---------------~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQ---------------SLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCS---------------CHHHHHHHHHHHHHHHHHHGG
T ss_pred ChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHHHHHhhh
Confidence 45888999999999986532 1 22222 24688888888766 588999999999988753211
Q ss_pred h---hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCc---hhhHhhhhhHHHHHHHHhccC-CChHHHHH
Q 014913 186 L---KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEP---MQLISLRQELFVEVIQVLHDH-ISQQASKS 258 (416)
Q Consensus 186 ~---~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~~ 258 (416)
. ...+ . ..++.|+..|++. +.++..|+++|.+++..... ....-.-...++.|+.++++. .+..++..
T Consensus 445 ~~~~~~~~---~-~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~ 519 (861)
T 2bpt_A 445 SIDPQQHL---P-GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519 (861)
T ss_dssp GSCTTTTH---H-HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHH
T ss_pred hcCCHHHH---H-HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHH
Confidence 0 1223 2 3788888888775 89999999999999865321 111111236788999999854 13688999
Q ss_pred HHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcc-------------cchhhhHHHHHHHHHHHcCCh-hhHHHHHhcC
Q 014913 259 ALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDS-------------SLERRASEMILTVLDLLCQCA-EGRAELLKHG 323 (416)
Q Consensus 259 A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~-------------~~~~~~~~~a~~~L~~La~~~-~~~~~i~~~~ 323 (416)
++.+|..+..... .....+. ..+|.++..+... .....++..++.+|..++..- ..-.... .
T Consensus 520 a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~ 596 (861)
T 2bpt_A 520 AFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--D 596 (861)
T ss_dssp HHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--H
T ss_pred HHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--H
Confidence 9999999875443 2223333 3778888877631 013456778889998887632 2111111 1
Q ss_pred CchHHHHHHHHhcCh-hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 324 AGLAIVSKKILRVSQ-VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~-~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
..++.+++.+...+. ..++.+..++..++...+. .....+ ...++.|+..+..+ ++..|..|..++..+.+.
T Consensus 597 ~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~l--~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK-GFEKYL--ETFSPYLLKALNQV-DSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG-GGHHHH--HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh-hHHHHH--HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Confidence 345666665555555 7888888888888865432 222222 23788888888653 677888888888877764
No 120
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.58 E-value=3.6e-08 Score=77.06 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=39.6
Q ss_pred cccCcCccccCCCc------------------eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDP------------------VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~P------------------v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+-.|+||++.|.+| +.++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcce
Confidence 45799999999977 34699999999999999976 689999998764
No 121
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.58 E-value=3.8e-07 Score=101.68 Aligned_cols=272 Identities=11% Similarity=0.116 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
..+..++..+.+ +++.|..|...|.+........-..-.....++.|++.|.+. ++.+|..|+.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~---------------~~~vR~~A~~ 70 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK---------------NGEVQNLAVK 70 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS---------------SHHHHHHHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC---------------CHHHHHHHHH
Confidence 567788888864 569999999999887654321101011225678888888755 5889999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch-----hhHhhhhhHHHHHHHHhc-
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM-----QLISLRQELFVEVIQVLH- 248 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~g~i~~Lv~lL~- 248 (416)
+|..++..-.. ..+. ..++.|+..|.+++..+|..|+.+|..++..-... .........+|.|+..+.
T Consensus 71 ~L~~l~~~~~~--~~~~----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~ 144 (1230)
T 1u6g_C 71 CLGPLVSKVKE--YQVE----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK 144 (1230)
T ss_dssp HHHHHHTTSCH--HHHH----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCH--HHHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC
Confidence 99988754322 2222 37788888888888899999999999998553322 011123468999999998
Q ss_pred cCCChHHHHHHHHHHHHhCCCC-cchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchH
Q 014913 249 DHISQQASKSALEVLVNICPWG-RNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLA 327 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~ 327 (416)
++ +...+..|+.+|.+++... +.-.... ...++.|+..|.+. +..+++.|+.+|..++...... +. ...++
T Consensus 145 ~~-~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~ 216 (1230)
T 1u6g_C 145 QE-DVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNI--VF--VDLIE 216 (1230)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC------C--TTHHH
T ss_pred CC-chHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcCHH--HH--HHHHH
Confidence 46 8899999999999987421 1111111 34677788888776 7789999999999998754322 22 35688
Q ss_pred HHHHHHHhcC-hhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 328 IVSKKILRVS-QVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 328 ~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
.+++.|.... ...+..++.++..++...+. .+.. .-...++.++..++.+ ++..|+.|...+..+.+..
T Consensus 217 ~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~--~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 217 HLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGE--YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp HHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTT--SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHH--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHC
Confidence 8888777653 35677788888888775442 1111 1146888898988754 7888999999888887743
No 122
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.57 E-value=1.1e-08 Score=75.72 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=39.3
Q ss_pred CCcccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++..|+||++.+.+||.++|||. ||..|+.+| ..||.|++.+.
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~ 60 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL------QSCPVCRSRVE 60 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC------SBCTTTCCBCC
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc------CcCCCCCchhh
Confidence 456789999999999999999999 999999875 37999999886
No 123
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.53 E-value=8.1e-06 Score=87.29 Aligned_cols=279 Identities=14% Similarity=0.124 Sum_probs=181.5
Q ss_pred HHHHHHHHHHh-c--CcHHHHHHHHHHHHHHhcChhhhhHHhh--cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 96 AQITKLLNEAA-K--SPQMQIKCLKKLRSIAAENETNKRCLES--AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 96 ~~i~~lv~~l~-~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
+-++.++..+. . ++..|..++..|..++.... .+.+.. ...++.+...+.++. .+..++.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~-------------~~~~vr~ 192 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEE-------------PSNNVKL 192 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTC-------------SCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCC-------------CCHHHHH
Confidence 45667777775 3 56788999999999987532 111211 256677777776541 1367899
Q ss_pred HHHHHHHhcCCChh-hh-hhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc
Q 014913 171 EALSILCNLKISEL-GL-KSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH 248 (416)
Q Consensus 171 ~A~~~L~~l~~~~~-~~-~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 248 (416)
.|+.+|.++...-. .. ..... . ..++.+...+...+.+++..++.+|..+.........-......++.++..+.
T Consensus 193 ~a~~~l~~~~~~~~~~~~~~~~~--~-~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (876)
T 1qgr_A 193 AATNALLNSLEFTKANFDKESER--H-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK 269 (876)
T ss_dssp HHHHHHHHHGGGCHHHHTSHHHH--H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH--H-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998764311 11 11111 1 15677777787889999999999999998653322111111257888888887
Q ss_pred cCCChHHHHHHHHHHHHhCCCC-------------------c--ch-HHHHhhCcHHHHHHHhhcc-----cchhhhHHH
Q 014913 249 DHISQQASKSALEVLVNICPWG-------------------R--NR-IKGVEAGAVSILIDLLLDS-----SLERRASEM 301 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~-------------------~--n~-~~i~~~G~v~~Lv~lL~~~-----~~~~~~~~~ 301 (416)
+. +..++..|+..+.+++... . .. .... ...+|.++..|... ..+..++..
T Consensus 270 ~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~ 347 (876)
T 1qgr_A 270 SD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKA 347 (876)
T ss_dssp CS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred CC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHH
Confidence 77 8899999999998886431 0 00 0111 34678888888532 113467888
Q ss_pred HHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCC
Q 014913 302 ILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDN 381 (416)
Q Consensus 302 a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~ 381 (416)
|+.+|..|+..-.. .++. ..++.+...+.+.+...++.|+.+|..++.+...+.... .. ...++.|+..+.++
T Consensus 348 a~~~l~~l~~~~~~--~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~-~~~l~~l~~~l~d~- 420 (876)
T 1qgr_A 348 AGVCLMLLATCCED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LV-IQAMPTLIELMKDP- 420 (876)
T ss_dssp HHHHHHHHHHHHGG--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HH-HHHHHHHHHHHTCS-
T ss_pred HHHHHHHHHHHCcH--hhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HH-HHHHHHHHHHhCCC-
Confidence 88899888764321 1221 344555554444566899999999999998664212222 22 45889999999764
Q ss_pred cHHHHHHHHHHHHHHHHhcc
Q 014913 382 SMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 382 ~~~~k~~A~~ll~~l~~~~~ 401 (416)
.+..|..|..+|..+.++..
T Consensus 421 ~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 421 SVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHHHHHhCc
Confidence 78999999999999988653
No 124
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.50 E-value=1.5e-06 Score=92.78 Aligned_cols=262 Identities=16% Similarity=0.082 Sum_probs=172.3
Q ss_pred CcHHHHHHHHHHHHHHhcChhh---hhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCCh-
Q 014913 108 SPQMQIKCLKKLRSIAAENETN---KRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISE- 183 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~---~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~- 183 (416)
++.+|..++++|..++...... ... -...+|.|+..|.+. +.++..|+++|.+++..-
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~----------------~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH----------------PKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC----------------HHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC----------------hHHHHHHHHHHHHHHHhcc
Confidence 4688888889998888642210 111 124577788877543 678999999998887432
Q ss_pred ----hhhhhhhccccCCccHHHHHHHhcCC--HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC-------
Q 014913 184 ----LGLKSLVMGRNGTFVDSLTQIMQRGT--YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH------- 250 (416)
Q Consensus 184 ----~~~~~~i~~~~G~~i~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~------- 250 (416)
+.....+. ..++.|+..+++.+ ..+|..++.+|..+.........-.. ...+|.++..+...
T Consensus 486 ~~~~~~l~~~~~----~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i 560 (861)
T 2bpt_A 486 EATPSPIYNFYP----ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQ 560 (861)
T ss_dssp SSSSCGGGGGHH----HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGG
T ss_pred cccchhhHHHHH----HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhccc
Confidence 11222332 36778888887543 78999999999999876443322222 25778888877521
Q ss_pred -------CChHHHHHHHHHHHHhCCCCcc-hHHHHhhCcHHHHHHHhhcccchh-hhHHHHHHHHHHHcCChhh-HHHHH
Q 014913 251 -------ISQQASKSALEVLVNICPWGRN-RIKGVEAGAVSILIDLLLDSSLER-RASEMILTVLDLLCQCAEG-RAELL 320 (416)
Q Consensus 251 -------~~~~~~~~A~~aL~nLs~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~-~~~~~a~~~L~~La~~~~~-~~~i~ 320 (416)
.....+..++.+|.+++..-.. ..... ...++.++.++... +. .+++.++.++..++..... -....
T Consensus 561 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~--~~~~v~~~~~~~l~~l~~~~~~~~~~~l 637 (861)
T 2bpt_A 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK--DSAFIEDDVFYAISALAASLGKGFEKYL 637 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST--TGGGTHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC--CCCcHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0235677889999888753332 12222 24788888888876 45 7899999999999864322 22222
Q ss_pred hcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHh
Q 014913 321 KHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDN-SMKTKDKAREVLKLHARA 399 (416)
Q Consensus 321 ~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~-~~~~k~~A~~ll~~l~~~ 399 (416)
. ..++.|++.+...+...+..++.++..++...++ .....+ ...++.++..+++.. +...|+.+..++..+.++
T Consensus 638 ~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 638 E--TFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp H--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch-hccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 2 4677888877555667888899999888876543 222221 356777888887641 377899999888888775
Q ss_pred c
Q 014913 400 W 400 (416)
Q Consensus 400 ~ 400 (416)
.
T Consensus 713 ~ 713 (861)
T 2bpt_A 713 I 713 (861)
T ss_dssp H
T ss_pred h
Confidence 3
No 125
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=68.02 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=39.5
Q ss_pred CCcccCcCccccCCCceecCCcCc-ccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGIT-YDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght-~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.++..|+||++.+.++|.++|||. ||..|+.+ ...||.|++.+.
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~ 57 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQ 57 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchh
Confidence 457899999999999999999999 99999874 468999999886
No 126
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.49 E-value=5.3e-06 Score=88.70 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=179.5
Q ss_pred HHHHHHHhc---CcHHHHHHHHHHHHHHhcChhh-hhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 99 TKLLNEAAK---SPQMQIKCLKKLRSIAAENETN-KRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 99 ~~lv~~l~~---~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.++..+.+ ++..|..|+++|..++..-..+ .........++.+...+.+. +.+++..|+.
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~---------------~~~vr~~a~~ 239 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP---------------DTRVRVAALQ 239 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS---------------SHHHHHHHHH
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC---------------CHHHHHHHHH
Confidence 344455542 3578999999999987643221 11111123567777766544 4789999999
Q ss_pred HHHhcCCChhh-hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC------------------chhhHh-
Q 014913 175 ILCNLKISELG-LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE------------------PMQLIS- 234 (416)
Q Consensus 175 ~L~~l~~~~~~-~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~------------------~~~~~~- 234 (416)
+|..+...... ....+. . ..++.++..+.+.+..++..|+..+..++.... ......
T Consensus 240 ~l~~l~~~~~~~~~~~~~--~-~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (876)
T 1qgr_A 240 NLVKIMSLYYQYMETYMG--P-ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK 316 (876)
T ss_dssp HHHHHHHHSGGGCHHHHT--T-THHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHH
T ss_pred HHHHHHHHhHHHHHHHHH--H-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHH
Confidence 99988753221 223332 2 278888888888889999999999998875420 000010
Q ss_pred -hhhhHHHHHHHHhcc------CCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHH
Q 014913 235 -LRQELFVEVIQVLHD------HISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLD 307 (416)
Q Consensus 235 -~~~g~i~~Lv~lL~~------~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~ 307 (416)
.-...++.++..+.. +.+...++.|+.+|..|+.... ..++. .+++.+...+.+. +..+++.|+.+|.
T Consensus 317 ~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~--~~~~r~~a~~~l~ 391 (876)
T 1qgr_A 317 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNP--DWRYRDAAVMAFG 391 (876)
T ss_dssp HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCS--SHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCC--ChHHHHHHHHHHH
Confidence 113577888888852 1156889999999998875332 12222 4667777777776 7889999999999
Q ss_pred HHcCChh--hHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHH
Q 014913 308 LLCQCAE--GRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKT 385 (416)
Q Consensus 308 ~La~~~~--~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~ 385 (416)
.++.... ....... ..++.++..+...+..++..|+.+|.+++...... ....-.-..+++.|+..|++ ++..
T Consensus 392 ~i~~~~~~~~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~--~~~v 466 (876)
T 1qgr_A 392 CILEGPEPSQLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA-AINDVYLAPLLQCLIEGLSA--EPRV 466 (876)
T ss_dssp HTSSSSCHHHHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG-TSSTTTHHHHHHHHHHHTTS--CHHH
T ss_pred HHHcCCCHHHHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchh-cccHHHHHHHHHHHHHHHcC--CHHH
Confidence 9987532 2223333 57888888776667789999999999999764320 00000012567888888865 4788
Q ss_pred HHHHHHHHHHHHHhcc
Q 014913 386 KDKAREVLKLHARAWK 401 (416)
Q Consensus 386 k~~A~~ll~~l~~~~~ 401 (416)
|+.|..+|..+.+...
T Consensus 467 ~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 467 ASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988887643
No 127
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.48 E-value=6.6e-08 Score=78.95 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=90.1
Q ss_pred cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHH
Q 014913 136 AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAY 215 (416)
Q Consensus 136 ~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~ 215 (416)
...++.|+.+|.+. ++.++..|+++|.++. .. .++.|+.+|++.++.+|..
T Consensus 11 ~~~~~~l~~~L~~~---------------~~~vR~~A~~~L~~~~------------~~--~~~~L~~~L~d~~~~vR~~ 61 (131)
T 1te4_A 11 SSGLVPRGSHMADE---------------NKWVRRDVSTALSRMG------------DE--AFEPLLESLSNEDWRIRGA 61 (131)
T ss_dssp ----------CCSS---------------CCCSSSSCCSSTTSCS------------ST--THHHHHHGGGCSCHHHHHH
T ss_pred cccHHHHHHHhcCC---------------CHHHHHHHHHHHHHhC------------ch--HHHHHHHHHcCCCHHHHHH
Confidence 45678888888876 5778888888876542 12 4688999999999999999
Q ss_pred HHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccch
Q 014913 216 AVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLE 295 (416)
Q Consensus 216 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~ 295 (416)
|+++|.++.. ..+++.|+.+|+++ ++.++..|+++|.++. ...+++.|+.+|.+. +
T Consensus 62 A~~aL~~~~~-----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~--~ 117 (131)
T 1te4_A 62 AAWIIGNFQD-----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------GERVRAAMEKLAETG--T 117 (131)
T ss_dssp HHHHHGGGCS-----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSC--C
T ss_pred HHHHHHhcCC-----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCC--C
Confidence 9999988742 25789999999988 9999999999999875 235789999999876 8
Q ss_pred hhhHHHHHHHHHH
Q 014913 296 RRASEMILTVLDL 308 (416)
Q Consensus 296 ~~~~~~a~~~L~~ 308 (416)
..++..|+.+|..
T Consensus 118 ~~vr~~A~~aL~~ 130 (131)
T 1te4_A 118 GFARKVAVNYLET 130 (131)
T ss_dssp THHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHh
Confidence 8899999888764
No 128
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.47 E-value=2.2e-05 Score=68.89 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=162.1
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC--hhhhhhhhccccCCccHHHHHHHhcCCHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS--ELGLKSLVMGRNGTFVDSLTQIMQRGTYESRA 214 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~--~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~ 214 (416)
+.+..|..+|... |+.++.+|+.+|.++-.. +......+. ..++.++.++++.+..+..
T Consensus 33 ~~l~~L~~LL~dk---------------D~~vk~raL~~LeellK~~~~~l~~~~~e----~~Ld~iI~llk~~dEkval 93 (265)
T 3b2a_A 33 RALFLILELAGED---------------DETTRLRAFVALGEILKRADSDLRMMVLE----RHLDVFINALSQENEKVTI 93 (265)
T ss_dssp HHHHHHHHHTTSS---------------CHHHHHHHHHHHHHHHHHSCHHHHHHHHH----HHHHHHHHTCCSTTHHHHH
T ss_pred hHHHHHHHHHhcc---------------chHHHHHHHHHHHHHHHhccccccHHHHH----HHHHHHHHHHhccchhHHH
Confidence 4678899999766 689999999999988765 333333443 4999999999999999999
Q ss_pred HHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccc
Q 014913 215 YAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSL 294 (416)
Q Consensus 215 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~ 294 (416)
+|..+|..|-.+.+-...-.. -.+..|..+++++ +.-.+..|+..|..|......+ +++..|..++.+.
T Consensus 94 ~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Sk-- 162 (265)
T 3b2a_A 94 KALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSP-- 162 (265)
T ss_dssp HHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCS--
T ss_pred HHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCC--
Confidence 999999999866443333222 4678899999988 9999999999999993333333 3567888888776
Q ss_pred hhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 295 ERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 295 ~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
+..++..++.+|.+++...+...-+ .+.+.-+-.+|.+.++...+.|..+|..+....--+++...+. .+-..+
T Consensus 163 d~~vK~agl~~L~eia~~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~---~~~~~v 236 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELL---KISRIV 236 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH---HHHHHH
T ss_pred ChhHHHHHHHHHHHhhcccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHH---HHHHHH
Confidence 9999999999999998744322111 1222234444556678899999999999988764222333322 233333
Q ss_pred HHHh-cCCcHHHHHHHHHHHHHHHH
Q 014913 375 LVLQ-VDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 375 ~ll~-~~~~~~~k~~A~~ll~~l~~ 398 (416)
.-|- -.|.+..+.+|..+-..+-.
T Consensus 237 ~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 237 DGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHH
Confidence 3332 45789999999988776654
No 129
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=2.2e-07 Score=68.64 Aligned_cols=51 Identities=14% Similarity=0.333 Sum_probs=43.2
Q ss_pred CCCcccCcCccccC--CCceecCCc-----CcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 6 VPTFFLCPISLAIM--KDPVTVPTG-----ITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 6 ~~~~~~Cpic~~~~--~~Pv~l~cg-----ht~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.++..|+||++-+ .+|++++|+ |.|-..||.+|+...+..+||+|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 34567899999777 468888996 9999999999998754579999999886
No 130
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.40 E-value=4.1e-06 Score=73.50 Aligned_cols=186 Identities=10% Similarity=0.080 Sum_probs=135.6
Q ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChh-hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 96 AQITKLLNEAA-KSPQMQIKCLKKLRSIAAENET-NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
+-+.-++..|+ .++..+..|+..|.++.+.-+. .+..+.+ ..++.++.++.+. |..+.-.|+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~---------------dEkval~A~ 96 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQE---------------NEKVTIKAL 96 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCST---------------THHHHHHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcc---------------chhHHHHHH
Confidence 44445555554 4679999999999999987433 3333333 5699999999877 688999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
++|..|-.+.+-...-.. ..+..|.+++.+++.-.++.|+..+..+... . ...+++..|..++++. +.
T Consensus 97 r~L~~LLe~vpL~~~~y~----Kl~~aL~dlik~~~~il~~eaae~Lgklkv~-~------~~~~V~~~l~sLl~Sk-d~ 164 (265)
T 3b2a_A 97 RALGYLVKDVPMGSKTFL----KAAKTLVSLLESPDDMMRIETIDVLSKLQPL-E------DSKLVRTYINELVVSP-DL 164 (265)
T ss_dssp HHHHHHHTTCCBCHHHHH----HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBS-C------CCHHHHHHHHHHHTCS-SH
T ss_pred HHHHHHHcCCCCCHHHHH----HHHHHHHHHhcCCCchHHHHHHHHhCcCCcc-c------chHHHHHHHHHHHhCC-Ch
Confidence 999877654332222222 2566788888899999999999999999221 1 1236778888888887 99
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh
Q 014913 254 QASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~ 313 (416)
+++..+..+|.|++...+....+ .+++.-+-.+|.+. |+.+++.|+.+|..+...+
T Consensus 165 ~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 165 YTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQND--NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCc
Confidence 99999999999998644322211 22444456788888 9999999999999998864
No 131
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.40 E-value=5e-06 Score=75.09 Aligned_cols=189 Identities=10% Similarity=0.053 Sum_probs=137.7
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc-cCCChHHHHHHHHHHHHhCCCCcc-hHH
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH-DHISQQASKSALEVLVNICPWGRN-RIK 275 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~~~~n-~~~ 275 (416)
-+.+.+.+++.+...|..|+..|..+......... ......++.|...+. +. +..++..|+.+|..|+..-.. -..
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~-~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN-GEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC-CCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC-CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34588889999999999999999999865221111 112357888999994 77 899999999999999853321 112
Q ss_pred HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCC
Q 014913 276 GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFS 355 (416)
Q Consensus 276 i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~ 355 (416)
.+ .-.+|.|+..+.+. ...+++.|..+|..+..... - ...++.+...+.+.++.+++.++..|..+....
T Consensus 95 ~~-~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 95 YA-SACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HH-HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HH-HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 22 33889999999887 78899999999999987532 1 124566777666667899999999999965443
Q ss_pred C-ChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Q 014913 356 A-TNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 356 ~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~ 401 (416)
. +......+ .-.++.|+.+|.. ..++.|..|...+..+.++..
T Consensus 165 ~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 165 QPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHcC
Confidence 2 11112222 2578899999965 489999999999999988764
No 132
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.39 E-value=1.5e-05 Score=74.12 Aligned_cols=187 Identities=12% Similarity=0.073 Sum_probs=140.7
Q ss_pred HHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 97 QITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 97 ~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
.+..++..|. ++...+..++..|..+..++......+++.||+..|+++.... +...+.+++.+
T Consensus 119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~---------------~gN~q~Y~L~A 183 (339)
T 3dad_A 119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA---------------DHNYQSYILRA 183 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS---------------CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc---------------ChHHHHHHHHH
Confidence 4567778887 4578899999999997767777999999999999999999876 47899999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhH----------HHHHHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQEL----------FVEVIQ 245 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~----------i~~Lv~ 245 (416)
|.++-.+.+....++. ++ ..|..+..++.+.+..+.+.|..+|..++...+....++..+=- +..|+.
T Consensus 184 L~~LM~~v~Gm~gvvs-~~-~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~ 261 (339)
T 3dad_A 184 LGQLMLFVDGMLGVVA-HS-DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVS 261 (339)
T ss_dssp HHHHTTSHHHHHHHHH-CH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHH
T ss_pred HHHHHhccccccchhC-CH-HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHH
Confidence 9999988888777776 35 59999999999989999999999999999876655554433111 568999
Q ss_pred Hhc---cCCChHHHHHHHHHHHHhCC-CC--cchHH----HHhhCcHHHHHHHhhcccchhhhHHH
Q 014913 246 VLH---DHISQQASKSALEVLVNICP-WG--RNRIK----GVEAGAVSILIDLLLDSSLERRASEM 301 (416)
Q Consensus 246 lL~---~~~~~~~~~~A~~aL~nLs~-~~--~n~~~----i~~~G~v~~Lv~lL~~~~~~~~~~~~ 301 (416)
+|+ ++ +.+.+.+|...|-.+-. .+ +.+.. +-+.|.-..+..+|.....++++++.
T Consensus 262 ~L~~~~~~-D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 262 ILEEKNGA-DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHTTTTSC-CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHhccCCC-CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 997 55 88999998887766532 22 22333 33456555666666654324455443
No 133
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.38 E-value=1.4e-05 Score=78.73 Aligned_cols=305 Identities=12% Similarity=0.097 Sum_probs=185.5
Q ss_pred CCCchhHHHHHHHHHHhccCCCCCCCCCCCCCCChHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhcChhhhh------
Q 014913 61 LTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK---SPQMQIKCLKKLRSIAAENETNKR------ 131 (416)
Q Consensus 61 l~~n~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~---~~~~~~~Al~~L~~l~~~~~~~~~------ 131 (416)
..++...|+..++++..-... ..++-+..|+..+.+ ++..|..|...|+++.......+.
T Consensus 11 ~s~d~~~r~~Ae~~L~~~~~~-----------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 11 VSPDRLELEAAQKFLERAAVE-----------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp TCSCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhh-----------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 345666666666665542100 001334456666653 358899999999998754311110
Q ss_pred --HH---hhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHh
Q 014913 132 --CL---ESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ 206 (416)
Q Consensus 132 --~i---~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~ 206 (416)
.+ .+..+-..|+..|.+. ++.+ ..+..+|..++...... . .-+ +.++.|+..++
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~---------------~~~v-~~~~~~i~~ia~~~~~~-~---~w~-~ll~~L~~~l~ 138 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTE---------------TYRP-SSASQCVAGIACAEIPV-N---QWP-ELIPQLVANVT 138 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCC---------------CSSS-CSHHHHHHHHHHHHGGG-T---CCT-THHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCC---------------Cchh-hHHHHHHHHHHHHhccc-c---ccH-HHHHHHHHHhc
Confidence 01 1112334577777766 3566 77888888887543111 1 125 49999999999
Q ss_pred cC--CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC-ChHHHHHHHHHHHHhCCCCc-ch-HHHHhhCc
Q 014913 207 RG--TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI-SQQASKSALEVLVNICPWGR-NR-IKGVEAGA 281 (416)
Q Consensus 207 ~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~-n~-~~i~~~G~ 281 (416)
++ +..+++.|+.+|..++...............++.++..|++.. +..++..|+.+|.++...-+ +- ......-.
T Consensus 139 ~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l 218 (462)
T 1ibr_B 139 NPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFI 218 (462)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 98 9999999999999998643222111122368889999998762 57899999999999764322 11 01111114
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhH-HHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCC----
Q 014913 282 VSILIDLLLDSSLERRASEMILTVLDLLCQCAEGR-AELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSA---- 356 (416)
Q Consensus 282 v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~-~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~---- 356 (416)
++.|...+.+. +..++..++.+|..++...... ...+. ...++.++..+...++.++..|+..+..++....
T Consensus 219 ~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 295 (462)
T 1ibr_B 219 MQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAI 295 (462)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777666 7889999999999997632211 11111 1455666665655667888999998888876420
Q ss_pred ---------------ChHHHHHHHhcChHHHHHHHHhcC------CcHHHHHHHHHHHHHHHHhcc
Q 014913 357 ---------------TNSVLQEMLQIGVVAKLCLVLQVD------NSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 357 ---------------~~~~~~~i~~~G~v~~L~~ll~~~------~~~~~k~~A~~ll~~l~~~~~ 401 (416)
-....... -...++.|+..|... .+...|+.|..+|..+.....
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~ 360 (462)
T 1ibr_B 296 EASEAAEQGRPPEHTSKFYAKGA-LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 360 (462)
T ss_dssp HHCCTTCSSSCSSCCCCCHHHHH-HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred hcccccccCCCccchhHHHHHHH-hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc
Confidence 00011000 023566666666431 133578888888888887544
No 134
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.38 E-value=3.3e-06 Score=76.29 Aligned_cols=179 Identities=11% Similarity=0.072 Sum_probs=134.1
Q ss_pred HHHHHhc-CcHHHHHHHHHHHHHHhcChhhh-hHHhhcCcHHHHHHHhc-cCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 014913 101 LLNEAAK-SPQMQIKCLKKLRSIAAENETNK-RCLESAGAVEFLASFVT-NSNAMEESPEGFDNLHESSRPVDEALSILC 177 (416)
Q Consensus 101 lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~ 177 (416)
+...+.+ +...|..|+..|..++...+... ..+ ...++.|...|. +. +..++..|+.+|.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~---------------~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS---------------NVVLVAMAGKCLA 82 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCS---------------CHHHHHHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCC---------------CHHHHHHHHHHHH
Confidence 6666653 56999999999999998743211 111 245777888885 54 5889999999999
Q ss_pred hcCCChh-hhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHH
Q 014913 178 NLKISEL-GLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQAS 256 (416)
Q Consensus 178 ~l~~~~~-~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 256 (416)
.|+..-. .....+. ..++.|++.+.+.+..+|+.|..+|..+..... . ...++.|...|++. ++.++
T Consensus 83 ~la~~l~~~~~~~~~----~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~-~~ll~~l~~~l~~~-~~~vr 150 (242)
T 2qk2_A 83 LLAKGLAKRFSNYAS----ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------L-EAQQESIVESLSNK-NPSVK 150 (242)
T ss_dssp HHHHHHGGGGHHHHH----HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------H-HHHHHHHHHHTTCS-CHHHH
T ss_pred HHHHHHhhhHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------H-HHHHHHHHHHHcCC-ChHHH
Confidence 9985321 1123332 388999999999999999999999999976432 1 25789999999998 99999
Q ss_pred HHHHHHHHHh-CCCCc---chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 257 KSALEVLVNI-CPWGR---NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 257 ~~A~~aL~nL-s~~~~---n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
..++..|..+ ..... ....+ ...+|.|+.+|.+. +.+++..|..+|..++..
T Consensus 151 ~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 151 SETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEP--DPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHH
Confidence 9999999995 44432 22222 25899999999887 889999999999998764
No 135
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.37 E-value=2e-05 Score=81.38 Aligned_cols=257 Identities=11% Similarity=0.043 Sum_probs=170.9
Q ss_pred HHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 98 ITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 98 i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
+..+-+.|.+ ++..+.+++..|-.+-..+... .-+....++++.+. +...++-..-.+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~---------------~~~~Krl~Yl~~ 94 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQ---------------KFTDKRIGYLGA 94 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSS---------------SHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCC---------------chHHHHHHHHHH
Confidence 4444555542 3456666666655544432211 23456677777766 477777777788
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQAS 256 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~ 256 (416)
.+++..+++ +.. . .+..|.+-|+++++.+|..|+.+|+++... .+. ...++.+.++|++. ++.+|
T Consensus 95 ~~~~~~~~e---~~~--l--~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~--~~l~~~l~~~L~~~-~~~VR 159 (618)
T 1w63_A 95 MLLLDERQD---VHL--L--MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC--RDLAGEVEKLLKTS-NSYLR 159 (618)
T ss_dssp HHHCCCCHH---HHH--H--HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH--HHHHHHHHHHHHSC-CHHHH
T ss_pred HHHhCCCcH---HHH--H--HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH--HHHHHHHHHHHcCC-CHHHH
Confidence 888765432 222 1 677888899999999999999999999732 122 36789999999998 99999
Q ss_pred HHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh-
Q 014913 257 KSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR- 335 (416)
Q Consensus 257 ~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~- 335 (416)
+.|+.+|.++...... +++ +.++.|..+|.+. ++.++..|+.+|..++........... ..++.+++.|..
T Consensus 160 k~A~~al~~l~~~~p~---~v~-~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~ 231 (618)
T 1w63_A 160 KKAALCAVHVIRKVPE---LME-MFLPATKNLLNEK--NHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNL 231 (618)
T ss_dssp HHHHHHHHHHHHHCGG---GGG-GGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChH---HHH-HHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHH
Confidence 9999999999763321 222 6788888999887 889999999999999876433222222 567888876654
Q ss_pred --------------cChhhhHHHHHHHHHHhcCCCCh--H---HHHHHH------------------------------h
Q 014913 336 --------------VSQVASERAVRILLSISKFSATN--S---VLQEML------------------------------Q 366 (416)
Q Consensus 336 --------------~~~~~~~~a~~~L~~L~~~~~~~--~---~~~~i~------------------------------~ 366 (416)
.++..+-..+.+|..++..+.+. . ....+. .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~ 311 (618)
T 1w63_A 232 IMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311 (618)
T ss_dssp HHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH
Confidence 25667777777777777653210 0 011110 0
Q ss_pred cChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 367 IGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 367 ~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
..++..|..++.+. ++..|..|...|..+...
T Consensus 312 ~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~ 343 (618)
T 1w63_A 312 VLAINILGRFLLNN-DKNIRYVALTSLLKTVQT 343 (618)
T ss_dssp HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhh
Confidence 13567777777654 677888887777776654
No 136
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.22 E-value=2e-05 Score=87.90 Aligned_cols=230 Identities=11% Similarity=0.064 Sum_probs=156.1
Q ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.-++.++..|. .++..|..|+.+|..++...+. ..+ ...++.|+..|.++ ++.++..|..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~---------------~~~vR~~a~~ 108 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSD---------------KEQLRDISSI 108 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCS---------------SSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCC---------------cHHHHHHHHH
Confidence 44566777775 3568999999999999875432 111 23567777777665 4778888888
Q ss_pred HHHhcCCChhh-------hhhhhccccCCccHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHH
Q 014913 175 ILCNLKISELG-------LKSLVMGRNGTFVDSLTQIMQ-RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQV 246 (416)
Q Consensus 175 ~L~~l~~~~~~-------~~~~i~~~~G~~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 246 (416)
+|..++..-.. ..... . ..++.|+..+. +++..++..|..+|..++........ -.....++.|+..
T Consensus 109 ~L~~i~~~l~~~~~~~~~~~~~~---~-~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~-~~~~~ll~~l~~~ 183 (1230)
T 1u6g_C 109 GLKTVIGELPPASSGSALAANVC---K-KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCLLPQ 183 (1230)
T ss_dssp HHHHHHHHCC-----CCTHHHHH---H-HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT-TTHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcccccchHHHHH---H-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHH
Confidence 88877642211 11122 3 38899999998 58899999999999999854222111 1124688899999
Q ss_pred hccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh-cCCc
Q 014913 247 LHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK-HGAG 325 (416)
Q Consensus 247 L~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~-~~~~ 325 (416)
|.++ +..+++.|+.+|..++...... +. ...++.|+..|.... +...+..++.+|..++..... .+.. -...
T Consensus 184 L~~~-~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l 256 (1230)
T 1u6g_C 184 LTSP-RLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQAGH--RIGEYLEKI 256 (1230)
T ss_dssp GGCS-SHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHHSSG--GGTTSCTTH
T ss_pred HcCC-cHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhHH--HHHHHHHHH
Confidence 9888 8899999999999998755432 22 346889999887652 245667778888877653211 1111 1356
Q ss_pred hHHHHHHHHhcChhhhHHHHHHHHHHhcCCC
Q 014913 326 LAIVSKKILRVSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 326 v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~ 356 (416)
++.+++.+...++.+++.+..++..++...+
T Consensus 257 ~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 7777776655567889999999998887654
No 137
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.21 E-value=1.7e-07 Score=74.33 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=0.0
Q ss_pred ccCcCccccCCCc-----------------ee-cCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDP-----------------VT-VPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~P-----------------v~-l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|+||++.|.+| ++ ++|||.|+..||.+|+.. +.+||.|++.+.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREWE 111 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCeee
Confidence 4799999999874 22 489999999999999986 679999998764
No 138
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.20 E-value=1.5e-07 Score=76.85 Aligned_cols=119 Identities=19% Similarity=0.073 Sum_probs=89.1
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHH
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIK 275 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 275 (416)
..++.|+.+|+++++.+|..|+++|..+.. ..++.|+.+|+++ ++.++..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS-------
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-------
Confidence 388899999999999999999988876531 1258999999988 99999999999998753
Q ss_pred HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHH
Q 014913 276 GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLS 350 (416)
Q Consensus 276 i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~ 350 (416)
..+++.|+.+|.+. ++.++..|+.+|..+.. ..+++.|++.+...+..++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34689999999887 88999999999998852 2457888887765566788888877754
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=1.7e-05 Score=72.04 Aligned_cols=190 Identities=8% Similarity=0.113 Sum_probs=133.8
Q ss_pred HHHHHh-cCcHHHHHHHHHHHH-HHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 014913 101 LLNEAA-KSPQMQIKCLKKLRS-IAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILC 177 (416)
Q Consensus 101 lv~~l~-~~~~~~~~Al~~L~~-l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~ 177 (416)
+-..+. ++...|.+|+..|.. ++.+++.....-.+ ...+..|.+.|..+. +..++..|+.+|.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--------------n~~v~~~A~~al~ 86 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--------------NIQAVALAAQSVE 86 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--------------CHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--------------CHHHHHHHHHHHH
Confidence 445554 456999999999999 87654322110111 245777888884331 5788999999999
Q ss_pred hcCCChh--hhh-hhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 178 NLKISEL--GLK-SLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 178 ~l~~~~~--~~~-~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
.|+.+-. ... .... ..++.+++.+......+++.+..+|..++...+.......-...++.|+..|++. ++.
T Consensus 87 ~la~~l~~~~f~~~y~~----~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~ 161 (249)
T 2qk1_A 87 LICDKLKTPGFSKDYVS----LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQ 161 (249)
T ss_dssp HHHHHHCTTTSCHHHHH----HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHH
T ss_pred HHHHhcccccccHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChH
Confidence 9984221 111 2332 3788999999888899999999999999865432111110125889999999998 999
Q ss_pred HHHHHHHHHHHhCCCCcch-HH---HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 255 ASKSALEVLVNICPWGRNR-IK---GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 255 ~~~~A~~aL~nLs~~~~n~-~~---i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
+++.++.+|..+....... .. .+....+|.|.+++.+. +.++++.|..+|..++.
T Consensus 162 vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 162 IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 9999999999987543321 22 23246899999999887 89999999999998864
No 140
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.10 E-value=0.00077 Score=56.94 Aligned_cols=215 Identities=13% Similarity=0.148 Sum_probs=150.9
Q ss_pred ChHHHHHHHHHHhcCc--HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 94 NKAQITKLLNEAAKSP--QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 94 ~~~~i~~lv~~l~~~~--~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+++-+..++..| +++ .+|.+|+..+..+++.-++..+.+ +.-|+.+++.+. ...+-.+
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksE--------------aIpltqe 89 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSE--------------AIPLTQE 89 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCC--------------SHHHHHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcc--------------cCchHHH
Confidence 456677788888 544 699999999999999877654443 345666666551 3455566
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
.++++..++.- +.+++. +.+|.+..-.+-|++.++.+...+|..++..... . -.+.+.-+..+|.+.
T Consensus 90 Ia~a~G~la~i---~Pe~v~----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~---l--~~~v~rdi~smltsk- 156 (253)
T 2db0_A 90 IAKAFGQMAKE---KPELVK----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM---L--MASIVRDFMSMLSSK- 156 (253)
T ss_dssp HHHHHHHHHHH---CHHHHH----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH---H--HHHHHHHHHHHTSCS-
T ss_pred HHHHHhHHHHh---CHHHHH----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH---H--HHHHHHHHHHHhcCC-
Confidence 77888877743 345565 3788888888889999999999999999865322 1 136778889999988
Q ss_pred ChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHH
Q 014913 252 SQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSK 331 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~ 331 (416)
+..-+-.|+..|..+.. |...-+.- .+|.|..+|.+. ++-++..|+.+|.+|+.....-+.++. .-++
T Consensus 157 d~~Dkl~aLnFi~alGe---n~~~yv~P-fLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRkii~------~kl~ 224 (253)
T 2db0_A 157 NREDKLTALNFIEAMGE---NSFKYVNP-FLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRKVVI------KRLE 224 (253)
T ss_dssp SHHHHHHHHHHHHTCCT---TTHHHHGG-GHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHH
T ss_pred ChHHHHHHHHHHHHHhc---cCccccCc-chHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHH
Confidence 77777777776665543 44444433 689999999998 889999999999999985433333332 1233
Q ss_pred HHHhcChhhhHHHHHHHHHHhc
Q 014913 332 KILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 332 ~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
-+...|+.++......|..|.-
T Consensus 225 e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 225 ELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp HCCCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHH
Confidence 3555566777777777766553
No 141
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.01 E-value=0.00091 Score=68.91 Aligned_cols=253 Identities=12% Similarity=0.067 Sum_probs=157.2
Q ss_pred HHHHHH--h-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 100 KLLNEA--A-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 100 ~lv~~l--~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
.+.+.+ . .+|-+|.+|+-++.++...+++ .+...+.++.|..+|.+. ++.++..|+.+|
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~d~---------------d~~V~~~a~~~l 211 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLNDQ---------------HLGVVTAATSLI 211 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTTCS---------------CHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhCCC---------------CccHHHHHHHHH
Confidence 444555 3 3679999999999999886653 222358999999999765 589999999999
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHHH----hcC-------------CHHHHHHHHHHHHHhhcccCchhhHhhhhhH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQIM----QRG-------------TYESRAYAVLLLKSMLEVAEPMQLISLRQEL 239 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL----~~~-------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 239 (416)
..++..+.. ... ..++.++..| ..+ ++=.+......|..++..++...... -...
T Consensus 212 ~~i~~~~~~---~~~----~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~-l~~~ 283 (621)
T 2vgl_A 212 TTLAQKNPE---EFK----TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGR-LTEC 283 (621)
T ss_dssp HHHHHHCHH---HHT----THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHH-HHHH
T ss_pred HHHHHhChH---HHH----HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHH-HHHH
Confidence 998754322 111 1444444444 322 46677777777777764322111100 0123
Q ss_pred HHHHHHHhccCC--------C--hHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 240 FVEVIQVLHDHI--------S--QQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 240 i~~Lv~lL~~~~--------~--~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
+..++..+.+.. + ..+.-.|+.++..+...+ .+.+ .++..|..+|.+. +++++..++.+|..+
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~--~~niry~aL~~l~~l 356 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHR--ETNLRYLALESMCTL 356 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCC--CcchHHHHHHHHHHH
Confidence 444443321110 1 266677888888886322 2222 3678888888766 789999999999999
Q ss_pred cCChhhHHHHHhcCCchHHHHHHHH-hcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHH
Q 014913 310 CQCAEGRAELLKHGAGLAIVSKKIL-RVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDK 388 (416)
Q Consensus 310 a~~~~~~~~i~~~~~~v~~Lv~~l~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~ 388 (416)
+........+ . .-...++..+. ..+..++..++.+|..++... .... .+..|...+.. .+...|+.
T Consensus 357 ~~~~~~~~~~-~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~----Nv~~-----Iv~eL~~yl~~-~d~~~~~~ 423 (621)
T 2vgl_A 357 ASSEFSHEAV-K--THIETVINALKTERDVSVRQRAVDLLYAMCDRS----NAQQ-----IVAEMLSYLET-ADYSIREE 423 (621)
T ss_dssp TTCTTTHHHH-H--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH----HHHH-----HHHHHHHHHHH-CCHHHHHH
T ss_pred HhccCcHHHH-H--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh----hHHH-----HHHHHHHHHHh-cCHHHHHH
Confidence 8754222223 2 23566666666 556688999999999998532 2333 45556666655 36666766
Q ss_pred HHHHHHHHHH
Q 014913 389 AREVLKLHAR 398 (416)
Q Consensus 389 A~~ll~~l~~ 398 (416)
+...+..+..
T Consensus 424 ~v~~I~~la~ 433 (621)
T 2vgl_A 424 IVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.99 E-value=7.1e-05 Score=67.95 Aligned_cols=185 Identities=10% Similarity=0.104 Sum_probs=128.8
Q ss_pred CcchHHHHHHHHHh-cCCChhhhhhhh--c-cccCCccHHHHHHH-hcCCHHHHHHHHHHHHHhhcccC-chhhHhhhhh
Q 014913 165 SSRPVDEALSILCN-LKISELGLKSLV--M-GRNGTFVDSLTQIM-QRGTYESRAYAVLLLKSMLEVAE-PMQLISLRQE 238 (416)
Q Consensus 165 ~~~~~~~A~~~L~~-l~~~~~~~~~~i--~-~~~G~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g 238 (416)
+-.-+..|+..|.. +..+ ..++. . +.. ..+..|...| +..+..++..|+.+|..|+..-. .....-...-
T Consensus 29 ~w~eRk~al~~L~~~~~~~---~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQ---TKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGG---CCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc---CCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 46778889988888 7633 22333 1 112 3677788888 67899999999999999996533 2221011224
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhh--
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEG-- 315 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~-- 315 (416)
.+|.++..+++. ...+++++..+|.+++..-+ +...-.=...++.|+..|.+. ++.+++.++.+|..++.....
T Consensus 105 llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 105 VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCcc
Confidence 899999999988 88999999999998876321 111100113678888888887 789999999999999864321
Q ss_pred H--HHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCC
Q 014913 316 R--AELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSAT 357 (416)
Q Consensus 316 ~--~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~ 357 (416)
. ...+. ...+|.|++.|...+..+++.|..+|..++..-++
T Consensus 182 ~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 182 STLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 1 12231 36789999987766778999999999998865443
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.91 E-value=0.00065 Score=63.23 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=131.9
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHH-hhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHH
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKS-MLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKG 276 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 276 (416)
+..+++.|.+++.+.+..+..-|.. +..+.+.....+.. +|+..|+++..++ +...+..++.||.+|-.+.+....+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccch
Confidence 3456677888888888888888887 55555555555554 8899999999998 9999999999999999988777666
Q ss_pred Hh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh-hHHHHHhcC------C---chHHHHHHHH---hcChhhhH
Q 014913 277 VE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE-GRAELLKHG------A---GLAIVSKKIL---RVSQVASE 342 (416)
Q Consensus 277 ~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~-~~~~i~~~~------~---~v~~Lv~~l~---~~~~~~~~ 342 (416)
++ ...|..|..++.+. +..+...|+.+|..++...+ +...+.... . -...||++|. ..+...+.
T Consensus 198 vs~~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASL--SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred hCCHHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 64 56888899999876 88999999999999988544 443332211 1 2668998776 44567888
Q ss_pred HHHHHHHHHhcCCCChH----HHHHHHhcChHHHHHHHHhcCC
Q 014913 343 RAVRILLSISKFSATNS----VLQEMLQIGVVAKLCLVLQVDN 381 (416)
Q Consensus 343 ~a~~~L~~L~~~~~~~~----~~~~i~~~G~v~~L~~ll~~~~ 381 (416)
+|...+..+-.+.++++ +...+-+.|.=..+...|.+.+
T Consensus 276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~ 318 (339)
T 3dad_A 276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAG 318 (339)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccC
Confidence 88888777766665433 3333445666666777776654
No 144
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.89 E-value=0.0028 Score=67.84 Aligned_cols=270 Identities=12% Similarity=0.108 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChh---hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHH
Q 014913 96 AQITKLLNEAAKSPQMQIKCLKKLRSIAAENET---NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEA 172 (416)
Q Consensus 96 ~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~---~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A 172 (416)
..+..+.+.+...... ..|+..+..++..... .-..++ +.+|.++..+.+. ...++..|
T Consensus 54 ~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk---------------~~~v~~aa 115 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNK---------------DKEIQSVA 115 (986)
T ss_dssp HHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCS---------------SHHHHHHH
T ss_pred hHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCC---------------chHHHHHH
Confidence 4445555555321122 7888888888865432 111222 5677777776654 35677776
Q ss_pred HHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcC-CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC
Q 014913 173 LSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRG-TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI 251 (416)
Q Consensus 173 ~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 251 (416)
..++..+...-. ...+. ..+|.|++.|.++ ....+..|..+|..|+... .......-...||.+-..+.+-
T Consensus 116 ~~~~~~~~~~~~--~~a~~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~- 187 (986)
T 2iw3_A 116 SETLISIVNAVN--PVAIK----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDT- 187 (986)
T ss_dssp HHHHHHHHHHSC--GGGHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHhCC--HHHHH----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccC-
Confidence 666554442211 12223 3889999999865 6999999999999998654 2333233346777777777776
Q ss_pred ChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHH
Q 014913 252 SQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSK 331 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~ 331 (416)
.++++++|..++..+|..-+|+.. ...||.||+-+.++ +. ...++..|..-+.-.+--..... -.+|-|.+
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p--~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r 258 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP--TE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSR 258 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT--TH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh--hh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHh
Confidence 889999999999999988888764 35789999999876 22 44455555444432222111111 23455555
Q ss_pred HHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Q 014913 332 KILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 332 ~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~ 401 (416)
-|...+...++.++.+.-|+|+--.++.....++- ..+|.|-.....-..|++|+.|...+..|.+.-.
T Consensus 259 ~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 259 GLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred hhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 55444667889999999999998888655544332 4455555555455689999999999999998644
No 145
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.88 E-value=1.1e-05 Score=60.67 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=39.6
Q ss_pred cCcCccccCCCce-ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPV-TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv-~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|+.|.-.+..=. ++||+|.||..|+..|..++ ..+||.|++++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~-~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG-DKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT-CCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc-CCCCcCcCCeee
Confidence 5999998888866 67999999999999998765 789999999876
No 146
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.75 E-value=0.0033 Score=64.68 Aligned_cols=226 Identities=9% Similarity=0.076 Sum_probs=140.4
Q ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhc----cCCCC-CCCCCCCCCCCCCcchHHH
Q 014913 98 ITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVT----NSNAM-EESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 98 i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~----~~~~~-~~~~~~~~~~~~~~~~~~~ 171 (416)
+..+...|. .++.++..|+..|..++.+++.. + ...+|.+++.|. ..... .+-... ...++..|..
T Consensus 189 ~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~---~~~~~w~qi~ 260 (621)
T 2vgl_A 189 TSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYY---FVPAPWLSVK 260 (621)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEET---TEESHHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhc---CCCCchHHHH
Confidence 344444453 36789999999999999876542 1 134555555543 21000 000000 0114789999
Q ss_pred HHHHHHhcCCCh-hhhhhhhccccCCccHHHHHHHh---------cCCH--HHHHHHHHHHHHhhcccCchhhHhhhhhH
Q 014913 172 ALSILCNLKISE-LGLKSLVMGRNGTFVDSLTQIMQ---------RGTY--ESRAYAVLLLKSMLEVAEPMQLISLRQEL 239 (416)
Q Consensus 172 A~~~L~~l~~~~-~~~~~~i~~~~G~~i~~Lv~lL~---------~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 239 (416)
.+..|..++..+ ......+. +.+..++..+. +.+. .+.-.|+.++..+... .... ..+
T Consensus 261 il~ll~~~~~~~d~~~~~~l~----~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~----~~~~--~~~ 330 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLT----ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE----PNLL--VRA 330 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHH----HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC----HHHH--HHH
T ss_pred HHHHHHHhCCCCCHHHHHHHH----HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc----HHHH--HHH
Confidence 999999988642 22222222 24555554332 2222 6667788888887521 1222 257
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhh-cccchhhhHHHHHHHHHHHcCChhhHHH
Q 014913 240 FVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLL-DSSLERRASEMILTVLDLLCQCAEGRAE 318 (416)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~~~a~~~L~~La~~~~~~~~ 318 (416)
+..|..+|.+. +++++-.|+.+|..++........+ ....+.++..|. +. +..++..++.+|..|+.. +|-..
T Consensus 331 ~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~~~~--~~~~~~i~~~L~~d~--d~~Ir~~aL~lL~~l~~~-~Nv~~ 404 (621)
T 2vgl_A 331 CNQLGQFLQHR-ETNLRYLALESMCTLASSEFSHEAV--KTHIETVINALKTER--DVSVRQRAVDLLYAMCDR-SNAQQ 404 (621)
T ss_dssp HHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTHHHH--HTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHCCH-HHHHH
T ss_pred HHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcHHHH--HHHHHHHHHHhccCC--CHhHHHHHHHHHHHHcCh-hhHHH
Confidence 88999999877 8999999999999998765432333 235777888888 76 889999999999999854 44444
Q ss_pred HHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 319 LLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 319 i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
++. .|.+.+...+...+..++..+..++.
T Consensus 405 Iv~------eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 405 IVA------EMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHH------HHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHH------HHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 433 45555655566666666666666653
No 147
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.72 E-value=0.0032 Score=66.84 Aligned_cols=223 Identities=10% Similarity=-0.044 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSL 189 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 189 (416)
.++..|+-.|......+. +..+++.|..+|.++ +..+++.|+.+|..+-.+..+
T Consensus 452 ~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd---------------~~~~~~~AalALGli~vGTgn---- 505 (963)
T 4ady_A 452 VLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYND---------------SATSGEAAALGMGLCMLGTGK---- 505 (963)
T ss_dssp HHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTC---------------CHHHHHHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcC---------------CHHHHHHHHHHHhhhhcccCC----
Confidence 345555555555433221 112467788888765 244556666677654322221
Q ss_pred hccccCCccHHHHHHH-hcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 190 VMGRNGTFVDSLTQIM-QRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
. .++..|+..+ ...+..++..++..|..+.... ...++.++..|....++-++..++.++.--..
T Consensus 506 ----~-~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~alglAya 571 (963)
T 4ady_A 506 ----P-EAIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTIALAYA 571 (963)
T ss_dssp ----H-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred ----H-HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1 2445555554 3457888888999988875431 13567778877754377888888888775555
Q ss_pred CCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh-cChhhhHHHHHH
Q 014913 269 WGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR-VSQVASERAVRI 347 (416)
Q Consensus 269 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~-~~~~~~~~a~~~ 347 (416)
+..|.. +|..|+..+.++. +..++..|+.+|..+..... ..++.+++++.. .++.++..|+.+
T Consensus 572 GTGn~~------aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalA 635 (963)
T 4ady_A 572 GTGNNS------AVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFA 635 (963)
T ss_dssp TSCCHH------HHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHH
T ss_pred CCCCHH------HHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 555543 4677777776553 56788899999998876542 346666665554 467889999999
Q ss_pred HHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Q 014913 348 LLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHAR 398 (416)
Q Consensus 348 L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~ 398 (416)
|..++.+.++.+ ++..|..++. +.++.+|+.|...|..+..
T Consensus 636 LGli~aGn~~~~---------aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 636 LGIACAGKGLQS---------AIDVLDPLTK-DPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHTSSSCCHH---------HHHHHHHHHT-CSSHHHHHHHHHHHHHHST
T ss_pred HHHhccCCCcHH---------HHHHHHHHcc-CCCHHHHHHHHHHHHHHhc
Confidence 999988776522 3444545554 3477788888777776654
No 148
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=8.9e-05 Score=53.40 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=38.7
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|.||.+++..=..- .|+|.|=..||.+||+..+..+||.|+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 5799999998754433 7999999999999998643589999998775
No 149
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.55 E-value=0.018 Score=48.64 Aligned_cols=213 Identities=12% Similarity=0.123 Sum_probs=146.4
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHH
Q 014913 137 GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAY 215 (416)
Q Consensus 137 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~ 215 (416)
.++..++.+|..+ -=.++.+|+.++.+++... ..++. + .+..|+-+++. ......+.
T Consensus 32 ~~l~~lI~~LDDD---------------lwtV~kNAl~vi~~i~~~~---~el~e--p--l~~kL~vm~~ksEaIpltqe 89 (253)
T 2db0_A 32 SVLKKLIELLDDD---------------LWTVVKNAISIIMVIAKTR---EDLYE--P--MLKKLFSLLKKSEAIPLTQE 89 (253)
T ss_dssp HHHHHHHHHTTCS---------------CHHHHHHHHHHHHHHHTTC---GGGHH--H--HHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhccH---------------HHHHHHhHHHHHHHHHHHh---HHHHH--H--HHHHHHHHHhhcccCchHHH
Confidence 5788899999766 2468999999999887543 34444 4 67777777764 46677777
Q ss_pred HHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccch
Q 014913 216 AVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLE 295 (416)
Q Consensus 216 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~ 295 (416)
-+.+++.++... ..+ +. +.+|.|..=..-+ ++..+-+...+|-.++..... .-.+++.-+..++.+. +
T Consensus 90 Ia~a~G~la~i~---Pe~-v~-~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltsk--d 157 (253)
T 2db0_A 90 IAKAFGQMAKEK---PEL-VK-SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSK--N 157 (253)
T ss_dssp HHHHHHHHHHHC---HHH-HH-HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCS--S
T ss_pred HHHHHhHHHHhC---HHH-HH-hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC--C
Confidence 889999998652 222 22 6888888888889 999999999999988763321 2234566677888866 5
Q ss_pred hhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHH
Q 014913 296 RRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCL 375 (416)
Q Consensus 296 ~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ 375 (416)
.. .=+.+|.-+..-.++...-+. --+|.|..+|...+.-++..|+.+|.+|+.-++ ++|..+ ..-+.
T Consensus 158 ~~---Dkl~aLnFi~alGen~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii------~~kl~ 224 (253)
T 2db0_A 158 RE---DKLTALNFIEAMGENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVV------IKRLE 224 (253)
T ss_dssp HH---HHHHHHHHHHTCCTTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHH------HHHHH
T ss_pred hH---HHHHHHHHHHHHhccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHH------HHHHH
Confidence 33 334455555554555555554 357888886666677899999999999998764 455542 23334
Q ss_pred HHhcCCcHHHHHHHHHHHHHHH
Q 014913 376 VLQVDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 376 ll~~~~~~~~k~~A~~ll~~l~ 397 (416)
-+.. .++-.+.+....|..+-
T Consensus 225 e~~D-~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 225 ELND-TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HCCC-SCHHHHHHHHHHHHHHH
T ss_pred HhcC-cHHHHHHHHHHHHHHHH
Confidence 4433 47777777776666554
No 150
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.55 E-value=0.054 Score=52.91 Aligned_cols=246 Identities=11% Similarity=0.088 Sum_probs=152.1
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh---hhhhhhccccCCccHHHHHHHhcCCHH
Q 014913 135 SAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL---GLKSLVMGRNGTFVDSLTQIMQRGTYE 211 (416)
Q Consensus 135 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~---~~~~~i~~~~G~~i~~Lv~lL~~~~~~ 211 (416)
+..++..++++|+... ..++....+..+..|...+. ....+..+.+ .....+.....+.+..
T Consensus 75 ~~~~~~~~l~lL~~~~--------------~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~-~~~~~l~~~~~~~dd~ 139 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSD--------------NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDP-KQLEQLFDVSLKGDFQ 139 (480)
T ss_dssp SSTTHHHHHHHHHSCC--------------CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCT-THHHHHHHHCSCSSHH
T ss_pred CchHHHHHHHHHhhcC--------------hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCc-ccchHHHHHHhcccch
Confidence 3467888999998763 57888899988888776654 4444544333 2333343333234444
Q ss_pred H-HHHHHHHHHHhhcccCchhhHhhhhhHHH--HHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhC--cHHHHH
Q 014913 212 S-RAYAVLLLKSMLEVAEPMQLISLRQELFV--EVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAG--AVSILI 286 (416)
Q Consensus 212 ~-~~~a~~~L~~l~~~~~~~~~~~~~~g~i~--~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G--~v~~Lv 286 (416)
. ...+..++..++......... . ...+. -+...|.+..+...+-.++.+|..|...++.|..+.+++ .+|+++
T Consensus 140 ~~ll~a~~l~~ll~~~~~~~~~~-l-~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~ 217 (480)
T 1ho8_A 140 TVLISGFNVVSLLVQNGLHNVKL-V-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLF 217 (480)
T ss_dssp HHHHHHHHHHHHHTSTTTCCHHH-H-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCccHhH-H-HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHH
Confidence 4 455555555554321111111 1 12223 344555553134566689999999999999999988653 478887
Q ss_pred HHhhcc---------------cchhhhHHHHHHHHHHHcCChhhHHHHHhcCCch--HHHHHHHHhc-ChhhhHHHHHHH
Q 014913 287 DLLLDS---------------SLERRASEMILTVLDLLCQCAEGRAELLKHGAGL--AIVSKKILRV-SQVASERAVRIL 348 (416)
Q Consensus 287 ~lL~~~---------------~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v--~~Lv~~l~~~-~~~~~~~a~~~L 348 (416)
.++... .....++-.++-+++.|+..++....+.. .+.. +.|++.+... ..++.+.++.+|
T Consensus 218 ~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~-~~i~~~~~L~~i~k~s~KEKvvRv~la~l 296 (480)
T 1ho8_A 218 KILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQ-KYLSDFLDLLKLVKITIKEKVSRLCISII 296 (480)
T ss_dssp HHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHh-cchHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 665521 01345678999999999999887777766 4433 5666655544 358999999999
Q ss_pred HHHhcCCC--ChHHHHH-HHhcChHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHh
Q 014913 349 LSISKFSA--TNSVLQE-MLQIGVVAKLCLVLQVD--NSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 349 ~~L~~~~~--~~~~~~~-i~~~G~v~~L~~ll~~~--~~~~~k~~A~~ll~~l~~~ 399 (416)
.|+..... ......+ +...++ .+++..|+.. .+++..+--..+...|.+.
T Consensus 297 ~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~ 351 (480)
T 1ho8_A 297 LQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENE 351 (480)
T ss_dssp HHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Confidence 99988663 1223343 334455 5566666553 3667777666666666664
No 151
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.52 E-value=0.0022 Score=68.68 Aligned_cols=260 Identities=11% Similarity=0.105 Sum_probs=169.8
Q ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 98 ITKLLNEAA-KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 98 i~~lv~~l~-~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
+..+++.+. ++...+..|...|..+....... .....+.+..|.+.+.... ++ +.|+.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~--------------~~---~~a~~~~ 76 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK--------------TA---ANAMQAV 76 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH--------------HH---HHHHHHH
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC--------------CH---HHHHHHH
Confidence 444555554 34566677777787776643211 1222477888888887651 12 8888888
Q ss_pred HhcCCChhh---hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh
Q 014913 177 CNLKISELG---LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ 253 (416)
Q Consensus 177 ~~l~~~~~~---~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 253 (416)
..|+..... ....+. +.++.+++.+......+|..|..++..+...-.... + ...+|.|+..|++...+
T Consensus 77 ~~~~~~~~~~~~~e~~~~----~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-~---~~~~~~~~~~~~~~~kw 148 (986)
T 2iw3_A 77 AHIANQSNLSPSVEPYIV----QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-I---KALLPHLTNAIVETNKW 148 (986)
T ss_dssp HHHTCTTTCCTTTHHHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-H---HHHHHHHHHHHHHCCCH
T ss_pred HHHHHhcCCCCCcccchH----HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-H---HHHHHHHHHHhccccch
Confidence 888854322 123333 267777777777778899998888888875432222 1 36899999999865468
Q ss_pred HHHHHHHHHHHHhCCCCcchHHHHh--hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHH
Q 014913 254 QASKSALEVLVNICPWGRNRIKGVE--AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSK 331 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~ 331 (416)
..+..|+.+|..|+.... .++.. ...||.+-+.+-+. .++++..|..++..+|..-.|+.- +.-||.||+
T Consensus 149 ~~k~~~l~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~ 220 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAAK--DQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQ 220 (986)
T ss_dssp HHHHHHHHHHHHHHHHSH--HHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH--HHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHH
Confidence 999999999999986442 33322 46788888888777 789999999999999875544421 345889999
Q ss_pred HHHhcChhhhHHHHHHHHHHhcCCC-ChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 332 KILRVSQVASERAVRILLSISKFSA-TNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 332 ~l~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
.|.+. .....++..|..-..-.. +.-.. +=.+|.|.+-|.. .+...|++++.++.+|.+..
T Consensus 221 ~~~~p--~~~~~~~~~l~~~tfv~~v~~~~l-----~~~~p~l~r~l~~-~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 221 CIADP--TEVPETVHLLGATTFVAEVTPATL-----SIMVPLLSRGLNE-RETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp HHHCT--THHHHHHHHHTTCCCCSCCCHHHH-----HHHHHHHHHHHTS-SSHHHHHHHHHHHHHHHTTC
T ss_pred HhcCh--hhhHHHHHHhhcCeeEeeecchhH-----HHHHHHHHhhhcc-CcchhheeeEEEEcchhhhc
Confidence 88754 223444444444222221 10111 1235566666654 37889999999999999854
No 152
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.44 E-value=0.00012 Score=50.61 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=39.7
Q ss_pred CcccCcCccccCCCceecCCcC-----cccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGI-----TYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cgh-----t~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+.-.|.||++-..+|.++||.+ .|=+.|+.+|+...++.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999998888888888653 577889999998655789999998875
No 153
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.32 E-value=0.075 Score=56.47 Aligned_cols=193 Identities=11% Similarity=0.024 Sum_probs=126.3
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc-CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR-GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEV 243 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 243 (416)
+..+++.++..|..+..+.+ ..++.+++.|.. .++-+|..++.++.--.....+ ..+|..|
T Consensus 521 ~e~vrR~aalgLGll~~g~~-----------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~L 582 (963)
T 4ady_A 521 HGNITRGLAVGLALINYGRQ-----------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRL 582 (963)
T ss_dssp CHHHHHHHHHHHHHHTTTCG-----------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHH
T ss_pred cHHHHHHHHHHHHhhhCCCh-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHH
Confidence 35678888888876654442 367777888765 5788888777777644333222 2466767
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcC
Q 014913 244 IQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHG 323 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~ 323 (416)
+..+.++.+..+++.|+.+|.-+....+ ..++.++.+|.... ++.++..|+.+|..++.+..+ .
T Consensus 583 L~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~-~------ 646 (963)
T 4ady_A 583 LHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL-Q------ 646 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC-H------
T ss_pred HHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc-H------
Confidence 7766554478899999999998776543 35778888665432 889999999999999765432 2
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCCh---HHHHHHHhcChHHHHHHHHhc-CCcHHHHHHHHHHHHHHH
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATN---SVLQEMLQIGVVAKLCLVLQV-DNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~i~~~G~v~~L~~ll~~-~~~~~~k~~A~~ll~~l~ 397 (416)
.++..|..++...+..++..|+.+|..+.....+. ++. +.+..|...... +-++.++-.|+.....+.
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva------~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVA------DINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHH------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHH------HHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 23345555444446689999999999998876652 222 223345555543 124556666666666554
No 154
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.31 E-value=0.011 Score=57.67 Aligned_cols=227 Identities=12% Similarity=0.123 Sum_probs=144.0
Q ss_pred chHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc---------------C--CHHHHHHHHHHHHHhhcccCc
Q 014913 167 RPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR---------------G--TYESRAYAVLLLKSMLEVAEP 229 (416)
Q Consensus 167 ~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~---------------~--~~~~~~~a~~~L~~l~~~~~~ 229 (416)
..+.-++.+|..|...++.+..+.. ..|..++.++.+++. + ...++-++..+++-|++..+.
T Consensus 183 ~~~~i~v~~L~~Ll~~~~~R~~f~~-~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~ 261 (480)
T 1ho8_A 183 DTCYVCIRLLQELAVIPEYRDVIWL-HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVF 261 (480)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHT-THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHH
T ss_pred chHHHHHHHHHHHhcchhHHHHHHH-cccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHH
Confidence 3455688888888877765444443 221246777655541 1 255678899999999987654
Q ss_pred hhhHhhhhhH--HHHHHHHhccCCChHHHHHHHHHHHHhCCCC-cch----HHHH-hhCcHHHHHHHhhccc-chhhhHH
Q 014913 230 MQLISLRQEL--FVEVIQVLHDHISQQASKSALEVLVNICPWG-RNR----IKGV-EAGAVSILIDLLLDSS-LERRASE 300 (416)
Q Consensus 230 ~~~~~~~~g~--i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~----~~i~-~~G~v~~Lv~lL~~~~-~~~~~~~ 300 (416)
...+. ..+. ++.|+.+++......+.+-++.+|.||.... ++. ..++ ..++ +++++.|.... .|+++.+
T Consensus 262 ~~~l~-~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 262 ANELV-QKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHHH-TTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHHH-hcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 44433 3343 3778888887657899999999999997654 222 2233 3344 66778786543 2455554
Q ss_pred HHHHHH-------HHHcCChhhHHHHHh-------------------------cCCchHHHHHHHHhc----------Ch
Q 014913 301 MILTVL-------DLLCQCAEGRAELLK-------------------------HGAGLAIVSKKILRV----------SQ 338 (416)
Q Consensus 301 ~a~~~L-------~~La~~~~~~~~i~~-------------------------~~~~v~~Lv~~l~~~----------~~ 338 (416)
..-... ..|+..++.+.++.. +-..+..|+++|.+. ++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 433222 233333333333322 013457788877632 34
Q ss_pred hhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 339 VASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 339 ~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
.+...|+.=+..++++.++ -+..+-+.|+=+.++.+|..+ +++.|..|-..+..+=.|
T Consensus 420 ~~laVAc~Digefvr~~P~--gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPE--SIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTT--HHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcc--hhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 5566666677778888875 566677899999999999775 899999998887766543
No 155
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.18 E-value=0.046 Score=51.80 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhh
Q 014913 110 QMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSL 189 (416)
Q Consensus 110 ~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~ 189 (416)
....+++..|..+-..++..-+. --....+.+++++.+. +..+++-..-.+.+++...+ .+
T Consensus 42 ~kc~~~l~kll~l~~~G~~f~~~-e~t~lf~~v~kl~~s~---------------d~~lKrLvYLyl~~~~~~~~---e~ 102 (355)
T 3tjz_B 42 RKCAHILTKILYLINQGEHLGTT-EATEAFFAMTKLFQSN---------------DPTLRRMCYLTIKEMSCIAE---DV 102 (355)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHGGGGCC---------------CHHHHHHHHHHHHHHTTTSS---CG
T ss_pred HHHHHHHHHHHHHHHCCCCCchh-HHHHHHHHHHHHhcCC---------------CHHHHHHHHHHHHHhCCCHH---HH
Confidence 33344665555555443321111 0113345678888887 57888888888888876532 23
Q ss_pred hccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC
Q 014913 190 VMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPW 269 (416)
Q Consensus 190 i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 269 (416)
+. ++..|.+=++++++-+|-.|..+|+++.... + .+ ...+.+-+.|.+. ++-+++.|+-+.+.|...
T Consensus 103 iL-----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m-~~-~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~ 169 (355)
T 3tjz_B 103 II-----VTSSLTKDMTGKEDSYRGPAVRALCQITDST-----M-LQ-AIERYMKQAIVDK-VPSVSSSALVSSLHLLKC 169 (355)
T ss_dssp GG-----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----T-HH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTT
T ss_pred HH-----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----H-HH-HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhcc
Confidence 33 6778888899999999999999999996542 1 22 5778888999998 999999999999999764
Q ss_pred CcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCCh
Q 014913 270 GRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCA 313 (416)
Q Consensus 270 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~ 313 (416)
... +++ +.+..+-+++.+. ++.++-+|+++|..+...+
T Consensus 170 ~pe---~v~-~~~~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 170 SFD---VVK-RWVNEAQEAASSD--NIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp CHH---HHH-TTHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTC
T ss_pred CHH---HHH-HHHHHHHHHhcCC--CccHHHHHHHHHHHHHhhc
Confidence 432 333 6889999999887 8889999999999998753
No 156
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.12 E-value=0.024 Score=50.53 Aligned_cols=244 Identities=14% Similarity=0.092 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 96 AQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLES-AGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 96 ~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
+.+..++..| .+|+.|..|+..|.+--...++....+=. .|.|..|++-.-+--+.-..+... .....=..+|+.
T Consensus 3 ~~i~qli~~L-~~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt---~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINEL-SSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLT---AHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHT-SSTTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccC---HHHHhHHHHHHH
Confidence 5677788888 78888998887776543333333333333 488888765443321000000000 001122467888
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCC-----HHHHHHHHHHHHHhhcccCch-hhHhhhhhHHHHHHHHhc
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGT-----YESRAYAVLLLKSMLEVAEPM-QLISLRQELFVEVIQVLH 248 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~ 248 (416)
.|.-+|.+++.+..++. + ...-.|-.+|+..+ .-.|-.+..+++.|...++.. .....+.+.||..++.++
T Consensus 79 LlQcvAshpetr~~Fl~--a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime 155 (268)
T 2fv2_A 79 LLQCVASHPETRSAFLA--A-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME 155 (268)
T ss_dssp HHHHHHHCTTTHHHHHH--T-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHcCcchhhHHHH--c-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence 88899999998888887 4 36666777777543 467888999999998664422 122334579999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcchHHHHh--------hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHH
Q 014913 249 DHISQQASKSALEVLVNICPWGRNRIKGVE--------AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELL 320 (416)
Q Consensus 249 ~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--------~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~ 320 (416)
.| +.-.|.-|...+..+-.++..-..+.. ..++..+|.-+...+ ++.+..+...+-..|+.++..|.++.
T Consensus 156 ~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~p-s~RLLKhiircYlRLsdn~rar~aL~ 233 (268)
T 2fv2_A 156 SG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEP-SARLLKHVVRCYLRLSDNPRAREALR 233 (268)
T ss_dssp HS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99 989999999888877655543322211 113333333333333 77889999999999999999998886
Q ss_pred hcCCchHHHH-----HHHHhcChhhhHHHHHHHHHH
Q 014913 321 KHGAGLAIVS-----KKILRVSQVASERAVRILLSI 351 (416)
Q Consensus 321 ~~~~~v~~Lv-----~~l~~~~~~~~~~a~~~L~~L 351 (416)
.. +|.-+ ..+.+.++..++.-...+.|+
T Consensus 234 ~~---LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 234 QC---LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HH---SCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred Hh---CcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence 52 12111 123344556666666666554
No 157
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.10 E-value=0.014 Score=63.13 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=127.7
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhc---cccCCccH----HHHHHHhcC---CHHHHHHHHHHHHHhhcccCchhhHh
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVM---GRNGTFVD----SLTQIMQRG---TYESRAYAVLLLKSMLEVAEPMQLIS 234 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~---~~~G~~i~----~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~ 234 (416)
+-..++.|+.++..++........-+. ... ...+ .++..|+++ .+-+|..|+|+|+.++..-. ...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~-~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~- 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLL-NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ- 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC-CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH-
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccc-cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH-
Confidence 346788888888888643211110000 000 1222 334445666 88999999999999987532 111
Q ss_pred hhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc---------chHHHHh--hCcHHHHHHHhhccc---chhhhHH
Q 014913 235 LRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR---------NRIKGVE--AGAVSILIDLLLDSS---LERRASE 300 (416)
Q Consensus 235 ~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~---------n~~~i~~--~G~v~~Lv~lL~~~~---~~~~~~~ 300 (416)
....++.++..|.+. +..++..|+.||.+++...+ .+..+.. ...++.|+.++.... ......+
T Consensus 494 -l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e 571 (960)
T 1wa5_C 494 -LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENE 571 (960)
T ss_dssp -HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCH
T ss_pred -HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccH
Confidence 236889999999887 89999999999999987421 2333322 245566666666530 0111345
Q ss_pred HHHHHHHHHcCCh-hhHHHHHhcCCchHHHHHHHHhc-----ChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHH
Q 014913 301 MILTVLDLLCQCA-EGRAELLKHGAGLAIVSKKILRV-----SQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLC 374 (416)
Q Consensus 301 ~a~~~L~~La~~~-~~~~~i~~~~~~v~~Lv~~l~~~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~ 374 (416)
.++.+|..++..- +.-..... ..++.|+..+... +......+..+|..+...... +.... ...-.++.+.
T Consensus 572 ~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~-~~~~~-~~~~~~p~~~ 647 (960)
T 1wa5_C 572 FLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR-QNLPL-LVDSMMPTFL 647 (960)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG-GGHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHHH
Confidence 6777776665421 11111111 2344555544431 224455677777777765321 12222 2345678888
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 375 LVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 375 ~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
.+|+.+ .....+.+-.++..+-+..
T Consensus 648 ~iL~~~-~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 648 TVFSED-IQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHTT-CTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhh-hHhhHHHHHHHHHHHHHhc
Confidence 888765 3445566666666666543
No 158
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.81 E-value=0.00062 Score=52.40 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=29.4
Q ss_pred CcccCcCccc-cCCCcee--cCCcCcccHHHHHHHHH
Q 014913 8 TFFLCPISLA-IMKDPVT--VPTGITYDRESIEKWLF 41 (416)
Q Consensus 8 ~~~~Cpic~~-~~~~Pv~--l~cght~c~~ci~~~~~ 41 (416)
+++.|++|.+ ++.+||. +.|+|+||+.|+..++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4688999996 5899998 89999999999998543
No 159
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.65 E-value=0.00036 Score=64.68 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=37.6
Q ss_pred ccCcCccccCCC----cee----cCCcCcccHHHHHHHHHcCC---------CCCCCCCCcccc
Q 014913 10 FLCPISLAIMKD----PVT----VPTGITYDRESIEKWLFAGK---------NNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~----Pv~----l~cght~c~~ci~~~~~~~~---------~~~CP~~~~~l~ 56 (416)
..|+||..++.+ |-. ..|||.|=..||.+|+.... ...||.|+++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 469999999987 432 37999999999999997521 146999999876
No 160
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.55 E-value=0.0067 Score=57.58 Aligned_cols=200 Identities=15% Similarity=0.125 Sum_probs=117.0
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
++-++-.|+++|+++...+ ++. ...+.+.+.|.+.++-+|..|+.+..+|..... .+ .+ +++..+-
T Consensus 117 N~~iR~lALRtL~~I~~~~-----m~~----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p---e~-v~-~~~~~l~ 182 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDST-----MLQ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF---DV-VK-RWVNEAQ 182 (355)
T ss_dssp CHHHHHHHHHHHHHHCCTT-----THH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH---HH-HH-TTHHHHH
T ss_pred cHhHHHHHHHHHhcCCCHH-----HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH---HH-HH-HHHHHHH
Confidence 5789999999999997432 333 277788899999999999999999999975422 22 23 6889999
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhccc-chhhhHHHHHHHHHHHcCChhhHHHHHhcC
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSS-LERRASEMILTVLDLLCQCAEGRAELLKHG 323 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~~~a~~~L~~La~~~~~~~~i~~~~ 323 (416)
.++.+. ++.++-+|+.+|+.+..++. . ++..|+..+..+. .++-.+-..+..+..+...++.. ...
T Consensus 183 ~ll~d~-n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~----~~~ 249 (355)
T 3tjz_B 183 EAASSD-NIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS----RDS 249 (355)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------
T ss_pred HHhcCC-CccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh----hHH
Confidence 999888 89999999999999987542 1 4555666665431 01222222222222332222000 002
Q ss_pred CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Q 014913 324 AGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 324 ~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~ 399 (416)
..++.+...|.+.++.+.-.|+.++..+...... .. ..++..|..++.+. ++..|-.|...|..+...
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~--~~-----~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK--EL-----APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMK 317 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC------------------CCCTHHHHHHSS-SSSSHHHHHHCC------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--HH-----HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHH
Confidence 2334444445555778888888888888663321 11 23456676777664 778898888777766663
No 161
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0023 Score=60.28 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=52.6
Q ss_pred cccCcCccccCCCceec-CCcCc--ccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHH
Q 014913 9 FFLCPISLAIMKDPVTV-PTGIT--YDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQS 73 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l-~cght--~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~ 73 (416)
.+.||++...|+.|+-- .|.|. |+...+..+........||+|++.+. ..++..+..+.+++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~-~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA-LENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC-GGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC-HHHeeEcHHHHHHHHh
Confidence 48999999999999965 89997 88877777766555899999999998 7888888777666543
No 162
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=96.10 E-value=0.0047 Score=57.96 Aligned_cols=64 Identities=11% Similarity=0.185 Sum_probs=53.1
Q ss_pred cccCcCccccCCCceec-CCcCc--ccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCchhHHHHHHH
Q 014913 9 FFLCPISLAIMKDPVTV-PTGIT--YDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQS 73 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l-~cght--~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~ 73 (416)
.+.||++...|+.|+-- .|.|. |+...+..+........||+|++.+. ..++..+..+.+++..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~-~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA-YESLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC-GGGEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC-HHHeEEcHHHHHHHHh
Confidence 47999999999999965 89998 88888777776655899999999998 7888888777666543
No 163
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.95 E-value=0.14 Score=47.50 Aligned_cols=137 Identities=14% Similarity=0.063 Sum_probs=83.9
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVI 244 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 244 (416)
.+..+--++++++|+-.+.....-++.... ..++.+...+.+.+..++..++.++.|++.........-....++..+.
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~-~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~ 239 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRE-SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLIS 239 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Confidence 355688899999999988775544443222 2555555555567899999999999999854211111111113555566
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhh-CcHHHHHHHhhcccchhhhHHHHH
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGRNRIKGVEA-GAVSILIDLLLDSSLERRASEMIL 303 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~-G~v~~Lv~lL~~~~~~~~~~~~a~ 303 (416)
.++....+.++..-++-||.+|...+.....+.+. |+-..+-+.... +....+.+.+-
T Consensus 240 ~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~-~~~~kv~~~~~ 298 (304)
T 3ebb_A 240 TILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV-SEPAKVSECCR 298 (304)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC-CSSHHHHHHHH
T ss_pred HHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC-CCchhHHHHHH
Confidence 66765448899999999999998766555555543 433333333332 12344444443
No 164
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.25 Score=44.88 Aligned_cols=183 Identities=10% Similarity=0.084 Sum_probs=118.8
Q ss_pred HHHHHhc-CcHHHHHHHHHHHHHHhcChhh--hhHHh-hc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 101 LLNEAAK-SPQMQIKCLKKLRSIAAENETN--KRCLE-SA-GAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 101 lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~--~~~i~-~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
+-.+|.+ +-..|.+|+..|..+....+.. .+... .. ..++.+-..+.+. +..++..++.+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds---------------N~~v~~~al~~ 78 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS---------------NVVAQEQAIVA 78 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS---------------SHHHHHHHHHH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc---------------hHHHHHHHHHH
Confidence 4456643 5699999999999988754321 11111 12 3445566677655 58889999988
Q ss_pred HHhcCCCh-------hhhhhhhccccCCccHHHHHH-HhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 176 LCNLKISE-------LGLKSLVMGRNGTFVDSLTQI-MQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 176 L~~l~~~~-------~~~~~~i~~~~G~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
|..++..- ......+ . ..++.|++- |.++...++..|..+|..+........ -.++.++..+
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~---~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l 148 (278)
T 4ffb_C 79 LNSLIDAFASSSLKNAHNITLI---S-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFF 148 (278)
T ss_dssp HHHHHTTCC---CCHHHHHHHH---H-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGG
T ss_pred HHHHHHHhhhhhcccchhHHHH---H-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHH
Confidence 87665321 1111222 2 377778875 677889999999999888875432211 2456677778
Q ss_pred ccCCChHHHHHHHHHHHHhCCC--Cc--chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC
Q 014913 248 HDHISQQASKSALEVLVNICPW--GR--NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 248 ~~~~~~~~~~~A~~aL~nLs~~--~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~ 312 (416)
++. ++.++..++..|..+-.. .. +....+. .+++.+..++.+. ++.+++.|..++..+-..
T Consensus 149 ~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 149 EKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG--DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp GCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS--SHHHHHHHHHHHHHHHTC
T ss_pred hcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHH
Confidence 888 999999998888876421 11 2222222 2566778888887 899999999999888664
No 165
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.22 E-value=1.7 Score=46.81 Aligned_cols=220 Identities=10% Similarity=0.041 Sum_probs=125.5
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHH---h--cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIM---Q--RGTYESRAYAVLLLKSMLEVAEPMQLISLRQEL 239 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL---~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 239 (416)
+-..++.|+.++..++..-.... . ..++.++.++ . .+++.+|..++++|+.++..-...... -..+
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~------~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE------K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh------h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 35678889999998876533211 1 1444454444 3 247899999999999998653322221 1257
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh--hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC--hhh
Q 014913 240 FVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVE--AGAVSILIDLLLDSSLERRASEMILTVLDLLCQC--AEG 315 (416)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~--~~~ 315 (416)
++.|+..|. +.++..|+.+|.+++..- +..+.. ...+..|..++..+..+...++.+..++..++.. ++.
T Consensus 548 l~~l~~~l~----~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~ 621 (971)
T 2x1g_F 548 INLLVRGLN----SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE 621 (971)
T ss_dssp HHHHHHHHH----SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHhC----hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH
Confidence 788887773 468999999999999533 233332 2455566677766322467788888888888653 244
Q ss_pred HHHHHhcCCchHHHHHHHHhc------ChhhhHHHHHHHHHHhcCC---CCh---HH-----HH--HHHhcChHHHHHHH
Q 014913 316 RAELLKHGAGLAIVSKKILRV------SQVASERAVRILLSISKFS---ATN---SV-----LQ--EMLQIGVVAKLCLV 376 (416)
Q Consensus 316 ~~~i~~~~~~v~~Lv~~l~~~------~~~~~~~a~~~L~~L~~~~---~~~---~~-----~~--~i~~~G~v~~L~~l 376 (416)
...... ..++++++.+... ++..+......|..|+..- ... .. .. .-.....++.+..+
T Consensus 622 ~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 699 (971)
T 2x1g_F 622 IPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRI 699 (971)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHH
Confidence 444443 3455555544321 2223344444444443210 000 00 00 01123567777777
Q ss_pred HhcC-CcHHHHHHHHHHHHHHHHhcc
Q 014913 377 LQVD-NSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 377 l~~~-~~~~~k~~A~~ll~~l~~~~~ 401 (416)
++.. .++...+.+..+++.+.+.+.
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHhhh
Confidence 7543 266888888888888777653
No 166
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.13 Score=46.87 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=112.8
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch---hhHh-hhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc-
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM---QLIS-LRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGR- 271 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~-~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~- 271 (416)
-+| |-+.|.+.+...|..|...|..+....... .... .-...++.+-+.+.+. +..++..++.+|..+.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhh
Confidence 555 668888999999999999998875432111 0000 0112344556677777 89999999999988764321
Q ss_pred ---chH--HHHhhCcHHHHHHH-hhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHH
Q 014913 272 ---NRI--KGVEAGAVSILIDL-LLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAV 345 (416)
Q Consensus 272 ---n~~--~i~~~G~v~~Lv~l-L~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~ 345 (416)
.+. ...-...+|.|+.= |.+. ...+++.+..+|..++........+ +..++..+.+.++.++..++
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHH
Confidence 111 11224467777764 5555 5678888888887775432111111 12233334455778888888
Q ss_pred HHHHHHhcCCCChHH-HHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcc
Q 014913 346 RILLSISKFSATNSV-LQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 346 ~~L~~L~~~~~~~~~-~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~ 401 (416)
..|..+-...+...+ ....+ ..+++.+..++.+ .++.+|..|..++-.+-++..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGH-GDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTC-SSHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhC
Confidence 777775443111000 00000 1234455666755 489999999999988887554
No 167
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.98 E-value=0.26 Score=48.97 Aligned_cols=253 Identities=10% Similarity=0.099 Sum_probs=149.5
Q ss_pred HHHHHHHhc-CcHHHHHHHHHHHHHHhcChh--hhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 99 TKLLNEAAK-SPQMQIKCLKKLRSIAAENET--NKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 99 ~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
..|+..|-+ +-+.|.-|+-+|+.+.+.... .|..-......--|+-+|.-+.= |. ..+|.--..++|.|+.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRF----GD-YVSDqVVAPVRETaAQt 251 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKF----ND-FVDDRTVAPVRDAAAYL 251 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCC----BB-CSSSSCBCHHHHHHHHH
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccc----cc-cccCeeeeehHHHHHHH
Confidence 345555533 349999999999999876531 22211111222222222321100 00 00111124689999999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQA 255 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 255 (416)
|..+ .+-+.. . ..+..|+..+..+..+++..+...|.++. +-... -.++++.++.-|++. +.++
T Consensus 252 LGaL-~hLp~e-------~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL~D~-DDDV 315 (800)
T 3oc3_A 252 LSRI-YPLIGP-------N-DIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLLSSP-DEDI 315 (800)
T ss_dssp HHHH-TTTSCS-------C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHTTCS-SHHH
T ss_pred HHHH-HhCChh-------H-HHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhcCCc-ccHH
Confidence 9887 543321 2 26666666667889999999999999992 11111 358899999999988 9999
Q ss_pred HHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHh
Q 014913 256 SKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILR 335 (416)
Q Consensus 256 ~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~ 335 (416)
+..|+.+|.-++ .++.. ..++..|.+.|.+..+=.......+..|+.|+..+.. ...+...||.|.-.+.+
T Consensus 316 RAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH 386 (800)
T 3oc3_A 316 KLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS 386 (800)
T ss_dssp HHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred HHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence 999999999988 22211 2345566666665311123445566677777665531 22234667777776666
Q ss_pred cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 336 VSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 336 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
.-..++..++.+|..+. +..+... +.+-+--+..++.++.+..+.+
T Consensus 387 tITSVR~AVL~TL~tfL----~~~~LRL---------IFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 387 PVPEVRTSILNMVKNLS----EESIDFL---------VAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SSHHHHHHHHHHTTTCC----CHHHHHH---------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH----hhhHHHH---------HHHHHHhCCcHHHHHHHHHHHH
Confidence 66788998888887776 2122222 2222112336777777766654
No 168
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.93 E-value=0.44 Score=43.05 Aligned_cols=172 Identities=10% Similarity=0.078 Sum_probs=111.4
Q ss_pred cCcHHHHHHHHHHHHHHhcChhhhhHHhhcC-cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC-hh
Q 014913 107 KSPQMQIKCLKKLRSIAAENETNKRCLESAG-AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS-EL 184 (416)
Q Consensus 107 ~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G-~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~-~~ 184 (416)
.+...+.+|+..|......+++ ..+.... .++.+.--+.+. +..+...++.+|..+... .+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~---------------N~~v~~~~L~~L~~l~~~l~~ 120 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFET---------------NPAALIKVLELCKVIVELIRD 120 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSC---------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCC---------------CHHHHHHHHHHHHHHHHHHHh
Confidence 4568888899988887765432 2222222 222222222233 477777777777654311 11
Q ss_pred hhhhhhcc-ccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHH
Q 014913 185 GLKSLVMG-RNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVL 263 (416)
Q Consensus 185 ~~~~~i~~-~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 263 (416)
....+... .. ..+|.|++-|..+...+|+.+-.+|..+... .--....+.++.-+++. +..+++.++..|
T Consensus 121 ~~y~~~~~ea~-~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l 191 (266)
T 2of3_A 121 TETPMSQEEVS-AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSK-NARQRSECLLVI 191 (266)
T ss_dssp TTCCCCHHHHH-HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred ccccchHHHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 10111110 02 3789999999888889999999888877643 12224677788888888 899999998888
Q ss_pred HHhCC-CCcchHHHHhhCcH---HHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 264 VNICP-WGRNRIKGVEAGAV---SILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 264 ~nLs~-~~~n~~~i~~~G~v---~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
..+-. +.-. ...++ |.+..++.+. +..++..|+.++..+-.
T Consensus 192 ~~li~~~G~~-----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 192 EYYITNAGIS-----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHCSG-----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-----ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 87632 2212 23468 9999999988 89999999999886644
No 169
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.58 E-value=1.5 Score=38.75 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=110.6
Q ss_pred HHHHHhcCc--HHHHHHHHHHHHHHhcC-hhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 014913 101 LLNEAAKSP--QMQIKCLKKLRSIAAEN-ETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILC 177 (416)
Q Consensus 101 lv~~l~~~~--~~~~~Al~~L~~l~~~~-~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~ 177 (416)
+++.|++.. +.-.+-+..|+...+.+ ...-+.+ ..||+..|+.+|..-.... ..+.+ ..+...+..++.+|.
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~---~~~~~-~~~~~~~~~~l~CLk 79 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEK---EETSG-NYDSRNQHEIIRCLK 79 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC---------CCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcc---cccch-hhhHHHHHHHHHHHH
Confidence 455564322 22233455555544543 3344555 5788999999997542100 00000 012466788889999
Q ss_pred hcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC--c-hhhHhh---------hhhHHHHHHH
Q 014913 178 NLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE--P-MQLISL---------RQELFVEVIQ 245 (416)
Q Consensus 178 ~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~~---------~~g~i~~Lv~ 245 (416)
.+.........++. ++ .++..|+..|.+.+..++..+..+|..+|...+ + -..+.. +..-..++|.
T Consensus 80 almn~~~G~~~vl~-~~-~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~ 157 (233)
T 2f31_A 80 AFMNNKFGIKTMLE-TE-EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLD 157 (233)
T ss_dssp HHTSSHHHHHHHHT-SS-SHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHhCChHHHHHHHc-Cc-HHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 88877777767666 56 599999999999999999999999999886654 3 222211 1113345778
Q ss_pred HhccCCChHHHHHHHHHHHHhCCCCc-------chHHHHhhCcHHHHHHHhhc
Q 014913 246 VLHDHISQQASKSALEVLVNICPWGR-------NRIKGVEAGAVSILIDLLLD 291 (416)
Q Consensus 246 lL~~~~~~~~~~~A~~aL~nLs~~~~-------n~~~i~~~G~v~~Lv~lL~~ 291 (416)
.|++..+.+.+.+++..|-.+....+ .|..+...|..+.+ +-|+.
T Consensus 158 ~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~ 209 (233)
T 2f31_A 158 GLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELRE 209 (233)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 77754366776666666655644443 34556667765554 44443
No 170
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.56 E-value=0.033 Score=49.65 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=38.6
Q ss_pred ccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..|.+|.++...=+.- .|++.|=..|+.+|++..+...||.|+...+
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4699999988865543 4999999999999998654679999988765
No 171
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.50 E-value=0.24 Score=53.79 Aligned_cols=150 Identities=5% Similarity=-0.010 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCC----ChHHHHHHHHHHHHhCCCCcchHHHHhhCcHH
Q 014913 208 GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHI----SQQASKSALEVLVNICPWGRNRIKGVEAGAVS 283 (416)
Q Consensus 208 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~----~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~ 283 (416)
.+...++.++++++.++...........-..+++.|+.++.+.. ...++..++++|...+..-.....+.+ .++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHHH
Confidence 57999999999999998654433221222368899999886410 233445667888776653322222221 2444
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHh-cC----CchHHHHHHHH----hcChhhhHHHHHHHHHHhcC
Q 014913 284 ILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLK-HG----AGLAIVSKKIL----RVSQVASERAVRILLSISKF 354 (416)
Q Consensus 284 ~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~-~~----~~v~~Lv~~l~----~~~~~~~~~a~~~L~~L~~~ 354 (416)
.|+.-|... .+.+++.|+.+|.+||.. .+..+.. +. --++.+++.+. +........+..++..+...
T Consensus 544 ~L~~~l~~~--~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHET--HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 455555444 578999999999999873 2233321 00 12333333232 34556777888888888887
Q ss_pred CCChHHHH
Q 014913 355 SATNSVLQ 362 (416)
Q Consensus 355 ~~~~~~~~ 362 (416)
.++...+.
T Consensus 620 ~~~~~~~~ 627 (1023)
T 4hat_C 620 ERSVAERN 627 (1023)
T ss_dssp CCSHHHHH
T ss_pred CCCHhhHH
Confidence 76544343
No 172
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.35 E-value=0.31 Score=43.36 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChh-hhhhhhc
Q 014913 113 IKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISEL-GLKSLVM 191 (416)
Q Consensus 113 ~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~-~~~~~i~ 191 (416)
.+|+.-|+-+|.+ ++.|..+.++...--|-.+|...+... +-+-++-.++.+++.|...++ +...++.
T Consensus 74 cnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r----------~fE~LRLtsLGVIgaLvK~dd~eVi~fLL 142 (268)
T 2fv2_A 74 CNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTR----------PFEYLRLTSLGVIGALVKTDEQEVINFLL 142 (268)
T ss_dssp HHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSH----------HHHHHHHHHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCC----------cchhhhhhHHHHHHHHhccCcHHHHHHHH
Confidence 6677777777765 569999999998877888887653110 013567778888887775432 2334444
Q ss_pred cccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhh-------hHHHHHHHHhccCCChHHHHHHHHHHH
Q 014913 192 GRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQ-------ELFVEVIQVLHDHISQQASKSALEVLV 264 (416)
Q Consensus 192 ~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 264 (416)
+ . +.+|..++.+..|+.-.+.-|+.++..+-.++.+-..+.... .++..+|.-+....++...++..++-.
T Consensus 143 ~-t-EiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYl 220 (268)
T 2fv2_A 143 T-T-EIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYL 220 (268)
T ss_dssp H-T-THHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred h-h-hHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3 4 599999999999999999999999999887765444443321 244444443333338999999999999
Q ss_pred HhCCCCcchHHHHh
Q 014913 265 NICPWGRNRIKGVE 278 (416)
Q Consensus 265 nLs~~~~n~~~i~~ 278 (416)
.|+.++..+..+..
T Consensus 221 RLsdn~rar~aL~~ 234 (268)
T 2fv2_A 221 RLSDNPRAREALRQ 234 (268)
T ss_dssp HHTTSHHHHHHHHH
T ss_pred HHhcCHHHHHHHHH
Confidence 99999988877654
No 173
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.24 E-value=2.1 Score=40.85 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=117.5
Q ss_pred HHHHHHHhcCc--HHHHHHHHHHHHHHhcCh-hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 014913 99 TKLLNEAAKSP--QMQIKCLKKLRSIAAENE-TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSI 175 (416)
Q Consensus 99 ~~lv~~l~~~~--~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 175 (416)
..++..|.+.. ....+-+..|+...+.++ ..-+.+. .+|+..|+.+|..-....... . +..+...+..++.+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~-~---~~~d~~~q~~~l~C 143 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEET-S---GNYDSRNQHEIIRC 143 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-----------CHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccc-c---chhhHHHHHHHHHH
Confidence 35677775332 323445677776555543 3445565 788999999996421000000 0 00134678888999
Q ss_pred HHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC--c-hhhHhh---------hhhHHHHH
Q 014913 176 LCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE--P-MQLISL---------RQELFVEV 243 (416)
Q Consensus 176 L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~~---------~~g~i~~L 243 (416)
|..+..+......++. ++ ..+..|+..|.+.++.++..+..+|..+|...+ + -..+.. +..-..++
T Consensus 144 LkalmN~~~G~~~vl~-~~-~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~l 221 (383)
T 3eg5_B 144 LKAFMNNKFGIKTMLE-TE-EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPL 221 (383)
T ss_dssp HHHHTSSHHHHHHHHT-CS-SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHH
T ss_pred HHHHhcchhhHHHHHc-Ch-HHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHH
Confidence 9988877777767776 56 599999999999999999999999999986654 2 222211 11125678
Q ss_pred HHHhccCCChHHHHHHHHHHHHhCCCCc-------chHHHHhhCcHHHHHHHhhcc
Q 014913 244 IQVLHDHISQQASKSALEVLVNICPWGR-------NRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 244 v~lL~~~~~~~~~~~A~~aL~nLs~~~~-------n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
|..|+++.+.+.+.+++..|-.+....+ -|..+...|..+.+-. |+..
T Consensus 222 v~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~ 276 (383)
T 3eg5_B 222 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREI 276 (383)
T ss_dssp HHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTS
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcC
Confidence 8888874367777766666666654443 3455667776665555 6544
No 174
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.13 E-value=0.88 Score=48.99 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh---c-cCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHH
Q 014913 208 GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL---H-DHISQQASKSALEVLVNICPWGRNRIKGVEAGAVS 283 (416)
Q Consensus 208 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL---~-~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~ 283 (416)
.+...++.|..+|..++........ ..++.++.++ . ++.++.++..++++|..++..-........ .+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHH
Confidence 5777899999999999865332211 2333333333 2 212678999999999998753221111111 2556
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhc-CCchHHHHHHHHh--cChhhhHHHHHHHHHHhcCCCChHH
Q 014913 284 ILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKH-GAGLAIVSKKILR--VSQVASERAVRILLSISKFSATNSV 360 (416)
Q Consensus 284 ~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~-~~~v~~Lv~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~~ 360 (416)
.|+..|. +.++..|+.+|.+++.. .+..+.-. ...+..+.+.+.+ .+...+..+..++..++...+.++.
T Consensus 550 ~l~~~l~-----~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 550 LLVRGLN-----SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHH-----SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHhC-----hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 6666662 47899999999999952 23333221 1334445554444 2457888888888888765432222
Q ss_pred HHHHHhcChHHHHHHH----HhcCC-cHHHHHHHHHHHHHHHHh
Q 014913 361 LQEMLQIGVVAKLCLV----LQVDN-SMKTKDKAREVLKLHARA 399 (416)
Q Consensus 361 ~~~i~~~G~v~~L~~l----l~~~~-~~~~k~~A~~ll~~l~~~ 399 (416)
...+. ..+++++.. ++... ++..+......+..+...
T Consensus 623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~ 664 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTL 664 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 32222 233444433 33221 344556666666666553
No 175
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.10 E-value=2.1 Score=45.97 Aligned_cols=179 Identities=11% Similarity=0.114 Sum_probs=106.4
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC---------chhhHh-
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE---------PMQLIS- 234 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~---------~~~~~~- 234 (416)
.+-++..|+++|..++..- ..+... ..++.++..|.+.+..++.+|+.+|.+++...+ ....+.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~--~~~~l~----~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p 544 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQL--TKAQLI----ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGS--CHHHHH----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred CceehHHHHHHHHHHHhhC--CHHHHH----HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhh
Confidence 4788999999999887532 123333 388899999988889999999999999986422 112121
Q ss_pred hhhhHHHHHHHHhccCC----ChHHHHHHHHHHHHhCC-CCcchHHHHhhCcHHHHHHHhhc---ccchhhhHHHHHHHH
Q 014913 235 LRQELFVEVIQVLHDHI----SQQASKSALEVLVNICP-WGRNRIKGVEAGAVSILIDLLLD---SSLERRASEMILTVL 306 (416)
Q Consensus 235 ~~~g~i~~Lv~lL~~~~----~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~v~~Lv~lL~~---~~~~~~~~~~a~~~L 306 (416)
.-...+..|+.++.... .....+.+..+|..+.. ..+.-..... ..++.|+..+.. .+.+......++.+|
T Consensus 545 ~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l 623 (960)
T 1wa5_C 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESI 623 (960)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 12357777777877630 01133456666665532 1122222222 255666666643 122456667788888
Q ss_pred HHHcCC--hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHh
Q 014913 307 DLLCQC--AEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSIS 352 (416)
Q Consensus 307 ~~La~~--~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~ 352 (416)
..++.. ++....+.. ..+|.+...|........+.+..++..+.
T Consensus 624 ~~l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 624 GAILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 887664 333334433 45677776555444455666666655544
No 176
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.76 E-value=1.4 Score=40.65 Aligned_cols=176 Identities=16% Similarity=0.129 Sum_probs=103.6
Q ss_pred cHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHH----HHHh-cCCHHH
Q 014913 138 AVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLT----QIMQ-RGTYES 212 (416)
Q Consensus 138 ~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv----~lL~-~~~~~~ 212 (416)
.+..|.+++ +- ..+.+--++.+|+.+..++... ..+.+.. .-..++ ..+. .+.+..
T Consensus 104 ~l~~l~kil-~W---------------P~~~~fPvLDLlRl~~l~p~~~-~~~~~~~--~~~~l~~~l~~~~~~~~~p~n 164 (304)
T 3ebb_A 104 QLQILWKAI-NC---------------PEDIVFPALDILRLSIKHPSVN-ENFCNEK--EGAQFSSHLINLLNPKGKPAN 164 (304)
T ss_dssp HHHHHHHHH-TS---------------CTTTCHHHHHHHHHHTTSHHHH-HHHHSTT--THHHHHHHHHHTTCTTSCHHH
T ss_pred HHHHHHHHH-cC---------------CHHhHHHHHHHHHHHHcCccHH-HHhhccc--cchHHHHHHHHhcCCCCChHH
Confidence 466777776 33 1455666777777666665543 3333222 212333 2222 235666
Q ss_pred HHHHHHHHHHhhcccCchhhHhhh-hhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCc--chHHHHhhCcHHHHHHHh
Q 014913 213 RAYAVLLLKSMLEVAEPMQLISLR-QELFVEVIQVLHDHISQQASKSALEVLVNICPWGR--NRIKGVEAGAVSILIDLL 289 (416)
Q Consensus 213 ~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~v~~Lv~lL 289 (416)
+--+++++.|+-........+... ...+..+...+.+. +..++.+++..++|++.... +.... ..-++..+..++
T Consensus 165 ~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~-~~~ll~~l~~il 242 (304)
T 3ebb_A 165 QLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEG-KAQCLSLISTIL 242 (304)
T ss_dssp HHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchH-HHHHHHHHHHHH
Confidence 888889999987665554444322 23555666666555 88999999999999986321 10011 111445555666
Q ss_pred hcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc
Q 014913 290 LDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 290 ~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~ 336 (416)
.... +.+....++.+|.+|...+....++.. .-++...++.+.+.
T Consensus 243 ~~~~-d~EalyR~LvALGtL~~~~~~~~~lak-~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 243 EVVQ-DLEATFRLLVALGTLISDDSNAVQLAK-SLGVDSQIKKYSSV 287 (304)
T ss_dssp TTCC-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHGGGGGGC
T ss_pred hccC-CHHHHHHHHHHHHHHHhCChhHHHHHH-HcCHHHHHHHHHhC
Confidence 5433 788999999999999976555555555 34455555545544
No 177
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.52 E-value=0.17 Score=50.29 Aligned_cols=153 Identities=14% Similarity=0.092 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHh
Q 014913 210 YESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLL 289 (416)
Q Consensus 210 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL 289 (416)
..+||.|+.+|+.+ ..-+.. ..++..|+..+..+ .++++..++-.|..+ .+-... =.++++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhc
Confidence 56899999999999 543332 24566666666777 899999999999998 111111 257888999999
Q ss_pred hcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHH----HhcCh--hhhHHHHHHHHHHhcCCCChHHHHH
Q 014913 290 LDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKI----LRVSQ--VASERAVRILLSISKFSATNSVLQE 363 (416)
Q Consensus 290 ~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l----~~~~~--~~~~~a~~~L~~L~~~~~~~~~~~~ 363 (416)
.+. +++++..|+.+|.-++ . ...++.++..+ ...++ .........|..|++...+. .
T Consensus 309 ~D~--DDDVRAVAAetLiPIA-~----------p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~-- 371 (800)
T 3oc3_A 309 SSP--DEDIKLLSAELLCHFP-I----------TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--S-- 371 (800)
T ss_dssp TCS--SHHHHHHHHHHHTTSC-C----------SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--C--
T ss_pred CCc--ccHHHHHHHHHhhhhc-c----------hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--c--
Confidence 888 8999999999999998 2 23344444433 33332 34556666777787766421 1
Q ss_pred HHhcChHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 364 MLQIGVVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 364 i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
.....||.|..+++.. ...+|..+..+|.
T Consensus 372 -~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~ 400 (800)
T 3oc3_A 372 -IPPERLKDIFPCFTSP-VPEVRTSILNMVK 400 (800)
T ss_dssp -CCSGGGGGTGGGGTCS-SHHHHHHHHHHTT
T ss_pred -cChHHHHHHHhhhcCC-cHHHHHHHHHHHH
Confidence 1137889999999774 7888887766553
No 178
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.16 E-value=1.3 Score=43.04 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=80.7
Q ss_pred cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHH
Q 014913 207 RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILI 286 (416)
Q Consensus 207 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv 286 (416)
.|+...+.-|+..|...-.+.... . ..+|..++++..++ +..+|..|.+.|..+|.+ ++... ++..|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l----~-~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPEL----A-DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGG----H-HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhh----H-HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 478999999999999886543332 2 25899999999999 999999999999999998 65444 467899
Q ss_pred HHhhcccchhhhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHH
Q 014913 287 DLLLDSSLERRASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLS 350 (416)
Q Consensus 287 ~lL~~~~~~~~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~ 350 (416)
+||..+ ++.-....-.+|..|-. ++ .+.+..|...+..+++.+++.++..|..
T Consensus 107 QlLqtd--d~~E~~~V~~sL~sllk~Dp---------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTD--DSAEFNLVNNALLSIFKMDA---------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCC--CHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhcc--chHHHHHHHHHHHHHHhcCh---------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 999876 44333334344444432 21 1223334444455555566666655533
No 179
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.03 E-value=6.9 Score=41.79 Aligned_cols=220 Identities=11% Similarity=0.091 Sum_probs=124.1
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHH---hcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHH
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIM---QRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFV 241 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 241 (416)
+...++.++.++..++..-.. . .. ..++.++..| ..+++.++..++++|+.++..-...... . ...++
T Consensus 462 ~w~~~eaal~al~~i~~~~~~-----~-~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l-~~vl~ 532 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDV-----N-YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-I-NSVLP 532 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCS-----S-CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-H-TTTHH
T ss_pred chHHHHHHHHHHHHHHhhcCc-----h-hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-H-HHHHH
Confidence 356788888899888754321 0 11 2455555554 2357889999999999998642211222 1 25788
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHh--hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCC--hhhHH
Q 014913 242 EVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVE--AGAVSILIDLLLDSSLERRASEMILTVLDLLCQC--AEGRA 317 (416)
Q Consensus 242 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~--~~~~~ 317 (416)
.|+..|.+ +.++..|+.+|.+++... +..+.. ...+..|..++.....+...++.+..++..++.. .+...
T Consensus 533 ~l~~~l~~---~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 533 LVLHALGN---PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHTTC---GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCC---chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 88888854 689999999999998532 222321 2345555566654311456788888888888753 24444
Q ss_pred HHHhcCCchHHHHHHHHh---c--ChhhhH---HHHHHHHHHhcCCCC--------------------hHHHHHHHhcCh
Q 014913 318 ELLKHGAGLAIVSKKILR---V--SQVASE---RAVRILLSISKFSAT--------------------NSVLQEMLQIGV 369 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~~---~--~~~~~~---~a~~~L~~L~~~~~~--------------------~~~~~~i~~~G~ 369 (416)
.... ..++.++..+.. . ++..+. .....|..+...-.. +..... .....
T Consensus 608 ~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 684 (963)
T 2x19_B 608 KNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVV-VLQQV 684 (963)
T ss_dssp HHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHH-HHHHH
T ss_pred HHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHH-HHHHH
Confidence 4443 455555554432 1 223333 233333333322110 001111 12345
Q ss_pred HHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhcc
Q 014913 370 VAKLCLVLQVD-NSMKTKDKAREVLKLHARAWK 401 (416)
Q Consensus 370 v~~L~~ll~~~-~~~~~k~~A~~ll~~l~~~~~ 401 (416)
++.+..+++.. .+....+.+..+++.+...+.
T Consensus 685 ~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 685 FQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 55555666432 256778888888877766543
No 180
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.82 E-value=1.4 Score=47.25 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=101.6
Q ss_pred hcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh---ccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcH
Q 014913 206 QRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL---HDHISQQASKSALEVLVNICPWGRNRIKGVEAGAV 282 (416)
Q Consensus 206 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL---~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v 282 (416)
.+.+...++.++.+|+.++....... ...++.++..+ .++ ++.++..++++|..++..-....... ..++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH-HHHH
Confidence 44578899999999999986533211 12334444443 234 67899999999999876422112233 3578
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhc-CCchHHHHHHHHh--cChhhhHHHHHHHHHHhcCCCChH
Q 014913 283 SILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKH-GAGLAIVSKKILR--VSQVASERAVRILLSISKFSATNS 359 (416)
Q Consensus 283 ~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~-~~~v~~Lv~~l~~--~~~~~~~~a~~~L~~L~~~~~~~~ 359 (416)
+.|+..|.+ +.++..|+.+|.+++.. .+..+.-. ...+..|.+.+.+ .+...+..+..++..++...+. +
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~-~ 604 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQV-E 604 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCH-H
Confidence 888888843 57899999999999852 22222110 0222333333333 2457788888888888865431 1
Q ss_pred HHHHHHhcChHHHHHHHHh----cCCcHHHHHHHHHHHHHHH
Q 014913 360 VLQEMLQIGVVAKLCLVLQ----VDNSMKTKDKAREVLKLHA 397 (416)
Q Consensus 360 ~~~~i~~~G~v~~L~~ll~----~~~~~~~k~~A~~ll~~l~ 397 (416)
...... ...++.+...++ ...+++.+.....++..+.
T Consensus 605 ~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 645 (963)
T 2x19_B 605 EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS 645 (963)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 222222 234444444432 2225666665555554443
No 181
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.47 E-value=7.5 Score=37.00 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=111.9
Q ss_pred HHHHHHhcCc--HHHHHHHHHHHHHHhcCh-hhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 014913 100 KLLNEAAKSP--QMQIKCLKKLRSIAAENE-TNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSIL 176 (416)
Q Consensus 100 ~lv~~l~~~~--~~~~~Al~~L~~l~~~~~-~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L 176 (416)
.++..|.+.. ..-.+-+..|+...+.++ ..-+.+. .+|+..|+.+|..-.... ...+. ..+...+..++.+|
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~---~~~~~-~~d~~~~~~~l~CL 82 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEK---EETSG-NYDSRNQHEIIRCL 82 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC---TTTCC-TTHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcc---ccccc-chhHHHHHHHHHHH
Confidence 4566665332 211234555555555443 3444453 688999999997531100 00000 01246678888999
Q ss_pred HhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccC--c-hhhHhh---------hhhHHHHHH
Q 014913 177 CNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAE--P-MQLISL---------RQELFVEVI 244 (416)
Q Consensus 177 ~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~~---------~~g~i~~Lv 244 (416)
..+.........++. .+ .++..|+..|.+.++.++..+..+|..+|...+ + -..+.. +..-..+||
T Consensus 83 kalmN~~~Gl~~vl~-~~-~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv 160 (386)
T 2bnx_A 83 KAFMNNKFGIKTMLE-TE-EGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 160 (386)
T ss_dssp HHHTSSHHHHHHHHH-SS-SHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHhCCHHHHHHHHc-Cc-HHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHH
Confidence 988877777766666 56 499999999999999999999999999887654 2 222211 111334588
Q ss_pred HHhccCCChHHHHHHHHHHHHhCCCCc-------chHHHHhhCcHHHHHHHhhc
Q 014913 245 QVLHDHISQQASKSALEVLVNICPWGR-------NRIKGVEAGAVSILIDLLLD 291 (416)
Q Consensus 245 ~lL~~~~~~~~~~~A~~aL~nLs~~~~-------n~~~i~~~G~v~~Lv~lL~~ 291 (416)
..++++.+.+.+.+++..|-.|....+ .|..+...|..+.| .-|+.
T Consensus 161 ~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~ 213 (386)
T 2bnx_A 161 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELRE 213 (386)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTT
T ss_pred HHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 888754366777666666666654443 35667777766555 45554
No 182
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.41 E-value=0.4 Score=34.87 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=36.1
Q ss_pred ccCcCccccC-----CCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIM-----KDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~-----~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|.||.+-. -+|.+. .|+...||.|.+--.+++ +..||.|+..+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG-~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG-TQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS-CSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc-CccccccCCccc
Confidence 4799998642 125544 799999999998877765 899999998886
No 183
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.83 E-value=5.5 Score=37.20 Aligned_cols=127 Identities=10% Similarity=0.136 Sum_probs=91.0
Q ss_pred HHhcCCChhh-hhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhc-cCCCh
Q 014913 176 LCNLKISELG-LKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLH-DHISQ 253 (416)
Q Consensus 176 L~~l~~~~~~-~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~ 253 (416)
|.+|-.++++ ...++. . +++..+....+-++.++....+..|...+....-.. . .-...+|.+++.+. ++ +.
T Consensus 266 LL~LLmHdSnAIDGFVk--~-DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t-~L~e~LPFi~~~i~~h~-eD 339 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVR--S-DGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-T-PLENILPFLLRLIEIHP-DD 339 (619)
T ss_dssp HHHHHCCSHHHHHHHHH--T-THHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-S-CCTTHHHHHHHHHHHCC-CH
T ss_pred HHHHHhcccccccceee--c-ccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-c-cccccchHHHHHhccCC-Cc
Confidence 3344445544 345665 5 599999999999999999999999999875433222 2 22257899988887 55 88
Q ss_pred HHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhhccc-----chhhhHHHHHHHHHH
Q 014913 254 QASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLLDSS-----LERRASEMILTVLDL 308 (416)
Q Consensus 254 ~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~~~~-----~~~~~~~~a~~~L~~ 308 (416)
++.-...+-|.|...+.. .+...+..|+|+.|-..+...+ .+..-+..|+++++|
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 999999999999998886 6666788999999999886432 122234455565554
No 184
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=90.29 E-value=1.9 Score=41.19 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=85.5
Q ss_pred HHHHhhCcHHHHHHHhhcc---------cchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHH
Q 014913 274 IKGVEAGAVSILIDLLLDS---------SLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERA 344 (416)
Q Consensus 274 ~~i~~~G~v~~Lv~lL~~~---------~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a 344 (416)
..++ .+++..|+.+|..- ..+......++.+|..|.....+...+..+..+|..|+..|.+....++..+
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a 182 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 182 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence 4555 67788999888521 0134667889999999999999999999999999999987777677899999
Q ss_pred HHHHHHHhcCCC----ChHHHHHH------HhcChHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 014913 345 VRILLSISKFSA----TNSVLQEM------LQIGVVAKLCLVLQVDNSMKTKDKAREVLKLH 396 (416)
Q Consensus 345 ~~~L~~L~~~~~----~~~~~~~i------~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l 396 (416)
+.+|..+|.... -+.+.+.+ .+..-+..++..|.+..+.+.+-.+..+++.+
T Consensus 183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999998764 12233222 22345777888886544444444444444433
No 185
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=90.06 E-value=14 Score=35.91 Aligned_cols=160 Identities=12% Similarity=0.039 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 95 KAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 95 ~~~i~~lv~~l~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.+....++...++++..+.-|..-|.+..++.++..+ -+|..++.+.... +..+|..|++
T Consensus 28 ~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDe---------------d~~IR~qaik 87 (507)
T 3u0r_A 28 KDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDE---------------DVSIRRQAIK 87 (507)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCS---------------SHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc---------------cHHHHHHHHH
Confidence 4455556666656788888888888888888876444 3577889998877 5889999999
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChH
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQ 254 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~ 254 (416)
.|-.+|.+ + .+. .....|+.+|++.+..-....-.+|..+-..+ -.|.+..|..-+.++ +..
T Consensus 88 ~Lp~~ck~-~----~i~----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D--------pk~tl~~lf~~i~~~-~e~ 149 (507)
T 3u0r_A 88 ELPQFATG-E----NLP----RVADILTQLLQTDDSAEFNLVNNALLSIFKMD--------AKGTLGGLFSQILQG-EDI 149 (507)
T ss_dssp HGGGGCCT-T----CHH----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHS-CHH
T ss_pred hhHHHhhh-h----hhh----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHccc-chH
Confidence 99999977 2 233 36778999999988777776667776665332 124455555555556 788
Q ss_pred HHHHHHHHHHHhC--CCCcchHHHHhhCcHHHHHHHhhcc
Q 014913 255 ASKSALEVLVNIC--PWGRNRIKGVEAGAVSILIDLLLDS 292 (416)
Q Consensus 255 ~~~~A~~aL~nLs--~~~~n~~~i~~~G~v~~Lv~lL~~~ 292 (416)
+|+.++.-|..=- ...+.-..=++.=++..+-++|.+.
T Consensus 150 ~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 150 VRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 8888888876421 1122111223333455555666444
No 186
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.01 E-value=7.8 Score=34.79 Aligned_cols=182 Identities=9% Similarity=0.040 Sum_probs=108.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhh-HHHHHHHHhccCCChHHHHHHHHHHHHhCC---CCcchH
Q 014913 199 DSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQE-LFVEVIQVLHDHISQQASKSALEVLVNICP---WGRNRI 274 (416)
Q Consensus 199 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~---~~~n~~ 274 (416)
+.+...|-+.+..-+..|...|...... +........+ .++-+.--+.+. +..+...++.+|..+-. ..+.+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLLSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHHHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3445555556777777777777765432 1111111111 122222122344 77777777777766521 111111
Q ss_pred HHHh-hCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhc
Q 014913 275 KGVE-AGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISK 353 (416)
Q Consensus 275 ~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~ 353 (416)
.-.+ .-.+|.|+.-+.+. .+.+++.+-.+|..|..- ..-....+.+++-+.+.+.+.++.++..+..+-.
T Consensus 126 ~~~ea~~~lP~LveKlGd~--k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEA--KDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 1111 23678888888766 677888888888777531 1111233455555666678889988888888766
Q ss_pred CCCChHHHHHHHhcChH---HHHHHHHhcCCcHHHHHHHHHHHHHHHHhc
Q 014913 354 FSATNSVLQEMLQIGVV---AKLCLVLQVDNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 354 ~~~~~~~~~~i~~~G~v---~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~ 400 (416)
..+-. ...++ +.+..++.+ .+..+|+.|...+..+-++.
T Consensus 197 ~~G~~-------~~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 197 NAGIS-------PLKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp HHCSG-------GGGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCC-------ccccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHHHh
Confidence 55431 24578 889888865 48899999998888777653
No 187
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.43 E-value=13 Score=34.37 Aligned_cols=247 Identities=12% Similarity=0.078 Sum_probs=157.2
Q ss_pred hHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhh----hhhhccccCCccHHHHHHHh
Q 014913 131 RCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGL----KSLVMGRNGTFVDSLTQIMQ 206 (416)
Q Consensus 131 ~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~----~~~i~~~~G~~i~~Lv~lL~ 206 (416)
..+.+.+.+..|+..|..= +-+.++.+..+..++-....+. ...+...+ ..+..|+.--
T Consensus 72 ~ei~~~dll~~Li~~l~~L---------------~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~p-eil~~L~~gY- 134 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLI---------------DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQ-NILFMLLKGY- 134 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGS---------------CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCT-HHHHHHHHGG-
T ss_pred HHHHHhCHHHHHHHhcccC---------------CchhhccHHHHHHHHHhcccCCCCchhHHHHcCH-HHHHHHHHhh-
Confidence 3355668899999988876 4778888888877766543221 12333222 1222222222
Q ss_pred cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh-CCCCcchHHHHhh---CcH
Q 014913 207 RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI-CPWGRNRIKGVEA---GAV 282 (416)
Q Consensus 207 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL-s~~~~n~~~i~~~---G~v 282 (416)
.++++--.+-..|..+..+..-.+.+. ..+.+..+.+..+.+ +-+....|..++..| ..+......+... -.+
T Consensus 135 -e~~diAl~~G~mLRecir~e~la~~iL-~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff 211 (341)
T 1upk_A 135 -ESPEIALNCGIMLRECIRHEPLAKIIL-WSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFF 211 (341)
T ss_dssp -GSTTTHHHHHHHHHHHHTSHHHHHHHH-HSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHH
T ss_pred -ccchhHhHHHHHHHHHHHhHHHHHHHh-ccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHH
Confidence 256667778888888887755444444 446778888999888 899999999999987 3444433344332 346
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHH---HHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCC-Ch
Q 014913 283 SILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAE---LLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSA-TN 358 (416)
Q Consensus 283 ~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~---i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~-~~ 358 (416)
...-+||.++ +--.+..++..|..|-.+..|... .+.+..-+..++.+|.+.+...|-.|..+.--...+.. .+
T Consensus 212 ~~y~~Ll~S~--NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~ 289 (341)
T 1upk_A 212 SEYEKLLHSE--NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ 289 (341)
T ss_dssp HHHHHHTTCS--SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHhcCC--cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence 6677888887 778899999999999887776544 34545666777776666678899999988877665543 34
Q ss_pred HHHHHHHh--cChHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHh
Q 014913 359 SVLQEMLQ--IGVVAKLCLVLQVD-NSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 359 ~~~~~i~~--~G~v~~L~~ll~~~-~~~~~k~~A~~ll~~l~~~ 399 (416)
.+...+.+ .-.+.-|-.+.... .++.-.+.=..+++.+...
T Consensus 290 ~I~~IL~~Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 290 PILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 45555554 23333333333222 1233334445577777764
No 188
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=88.26 E-value=0.33 Score=43.31 Aligned_cols=35 Identities=11% Similarity=-0.014 Sum_probs=21.4
Q ss_pred ChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHH
Q 014913 357 TNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVL 393 (416)
Q Consensus 357 ~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll 393 (416)
+..+|..+.+.-+.+.|.. | .+.+...|+.|..-|
T Consensus 207 d~~VR~~aa~~l~~~~L~~-L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 207 DWTVRLAAVEHASLEALRE-L-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp SHHHHHHHHHHSCHHHHHH-C-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCCHHHHHH-c-cCCCHHHHHHHHHHh
Confidence 3456666666544555544 4 455888888886543
No 189
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.04 E-value=5.7 Score=43.08 Aligned_cols=146 Identities=8% Similarity=-0.022 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhhh
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLKS 188 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~~ 188 (416)
...+..++.+++.++..-......-.-..+++.|++++..... . | ....++..++++|+..+.--.....
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~--------~-d-~k~~v~~t~~~~lGry~~wl~~~~~ 536 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG--------K-D-NKAVVASDIMYVVGQYPRFLKAHWN 536 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS--------H-H-HHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc--------C-c-chHHHHHHHHHHHHHHHHHHhccHH
Confidence 3778889999999887544332322223567888888864210 0 0 0123445666888876532222233
Q ss_pred hhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHh---------hhhhHHHHHHHHhccCCChHHHHHH
Q 014913 189 LVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLIS---------LRQELFVEVIQVLHDHISQQASKSA 259 (416)
Q Consensus 189 ~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---------~~~g~i~~Lv~lL~~~~~~~~~~~A 259 (416)
.+. + .+..|++.|...+++++..|++++.+|+...... .. --...+..+...+..- +......+
T Consensus 537 ~L~--~--vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~--l~~~~~~e~~p~~~~il~~l~~~~~~l-~~~~~~~l 609 (1023)
T 4hat_C 537 FLR--T--VILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH--FVIQQPRESEPFIQTIIRDIQKTTADL-QPQQVHTF 609 (1023)
T ss_dssp HHH--H--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH--HHSCCTTCSSCHHHHHHHTHHHHHTTS-CHHHHHHH
T ss_pred HHH--H--HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH--hhccCCCCCchhHHHHHHHHHHHHHhC-CHHHHHHH
Confidence 333 2 6666667676677899999999999999753321 11 0113344444444433 66777888
Q ss_pred HHHHHHhCCCCc
Q 014913 260 LEVLVNICPWGR 271 (416)
Q Consensus 260 ~~aL~nLs~~~~ 271 (416)
..+|..+.....
T Consensus 610 yeai~~vi~~~~ 621 (1023)
T 4hat_C 610 YKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 888888765443
No 190
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=87.96 E-value=7.2 Score=36.42 Aligned_cols=114 Identities=8% Similarity=0.029 Sum_probs=83.2
Q ss_pred HHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhH
Q 014913 220 LKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRAS 299 (416)
Q Consensus 220 L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~ 299 (416)
|.+|-.++.+...-.+..+|+..+-.+..-+ +.++.++....|...|....-...=. ...+|.+++.+...+ ++++.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~-eDdvv 342 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP-DDEVI 342 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC-CHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC-CcceE
Confidence 4455555444444455567888888888877 88999999999999887554322111 347899999997654 67899
Q ss_pred HHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc
Q 014913 300 EMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV 336 (416)
Q Consensus 300 ~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~ 336 (416)
-...+.|+|...+...-.++....++|+-|-..+.+.
T Consensus 343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 9999999999887665555444479999999888765
No 191
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=87.92 E-value=1.7 Score=35.98 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=63.8
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
++..|.+.|.+.++.++-.|+.+|-.+..+.+. .+..++.+...+..|+.++.....+.+|+++..++..-...+...|
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 345666777777888999999999888888763 6788888888999999998764578999999999988887666666
Q ss_pred C
Q 014913 405 C 405 (416)
Q Consensus 405 ~ 405 (416)
-
T Consensus 132 ~ 132 (163)
T 1x5b_A 132 Q 132 (163)
T ss_dssp T
T ss_pred c
Confidence 4
No 192
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.75 E-value=16 Score=39.55 Aligned_cols=225 Identities=16% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHH
Q 014913 92 PINKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVD 170 (416)
Q Consensus 92 ~~~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~ 170 (416)
|.+-+.+..++..+.+ +.+.|.+|-..|..+-.. + ++...+..+|.++. +..++.
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~--------------~~~vr~ 67 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFST--------------NPQSKF 67 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCS--------------CHHHHH
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCC--------------CHHHHH
Confidence 4566777777776653 446777787777666443 2 45666777776652 478899
Q ss_pred HHHHHHHhcCCC-----hhhhhhhhccccCCccHHHHHHHhcC-----CHHHHHHHHHHHHHhhcccC-chhhHhhhhhH
Q 014913 171 EALSILCNLKIS-----ELGLKSLVMGRNGTFVDSLTQIMQRG-----TYESRAYAVLLLKSMLEVAE-PMQLISLRQEL 239 (416)
Q Consensus 171 ~A~~~L~~l~~~-----~~~~~~~i~~~~G~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~ 239 (416)
.|+..|.+.... +++.+..+. . ..+..+...-..+ +..++...+.+|..++..+- ..+ .+.
T Consensus 68 ~aa~~Lk~~i~~~W~~l~~~~~~~ir--~-~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~l 139 (1049)
T 3m1i_C 68 IALSILDKLITRKWKLLPNDHRIGIR--N-FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEF 139 (1049)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHH--H-HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTH
T ss_pred HHHHHHHHHHHhhCccCCHHHHHHHH--H-HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHH
Confidence 999998876531 112233333 1 1333333222111 36778888899998886532 233 368
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHhCCC-----Cc----ch-----HHHHhh--CcHHHHHHHhhcccchhhhHHHHH
Q 014913 240 FVEVIQVLHDHISQQASKSALEVLVNICPW-----GR----NR-----IKGVEA--GAVSILIDLLLDSSLERRASEMIL 303 (416)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-----~~----n~-----~~i~~~--G~v~~Lv~lL~~~~~~~~~~~~a~ 303 (416)
++.|+.+++ . +...++.+..+|..|+.. .+ .| ..+.+. .++..+..++.... +..++..++
T Consensus 140 l~~L~~~~~-~-~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~-~~~~~~~aL 216 (1049)
T 3m1i_C 140 IPELIGSSS-S-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGS-SSSLIVATL 216 (1049)
T ss_dssp HHHHHHHHT-T-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHHHc-c-ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 899999997 4 566678888888877631 11 11 223221 12333444454432 456788888
Q ss_pred HHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcC
Q 014913 304 TVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKF 354 (416)
Q Consensus 304 ~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~ 354 (416)
.++.....+-..- .+.. ...++.+.+.+. .++..+..|+.+|..+...
T Consensus 217 ~~l~~~l~wi~~~-~~~~-~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 217 ESLLRYLHWIPYR-YIYE-TNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHTTTSCTH-HHHS-SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCCHH-HHhh-hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 8888776643321 2333 345555553233 2567788888888887765
No 193
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.74 E-value=12 Score=40.74 Aligned_cols=104 Identities=14% Similarity=0.043 Sum_probs=63.5
Q ss_pred ccHHHHHHHhc----CCHHHHHHHHHHHHHhhcc----cCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQR----GTYESRAYAVLLLKSMLEV----AEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
.+..+..++.+ +++.+++.+..++..|... ...+..-... -....|...+..+ +.+.+..++.+|.|+-.
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRA-KEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcC-ChHHHHHHHHHhhccCC
Confidence 55556666654 4677777777777777632 1111111111 2334444455666 77888899999999765
Q ss_pred CCcchHHHHhhCcHHHHHHHhhc-----ccchhhhHHHHHHHHHHHcCC
Q 014913 269 WGRNRIKGVEAGAVSILIDLLLD-----SSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 269 ~~~n~~~i~~~G~v~~Lv~lL~~-----~~~~~~~~~~a~~~L~~La~~ 312 (416)
. ..++.|..+|.. ......++..|+.+|+.++..
T Consensus 470 p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 470 P----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp G----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred h----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 2 356777777743 111345777899999998753
No 194
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=87.67 E-value=0.76 Score=32.61 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=33.1
Q ss_pred CCcccCcCccccCCCceecCC----cCcccHHHHHHHHHcC---CCCCCCC
Q 014913 7 PTFFLCPISLAIMKDPVTVPT----GITYDRESIEKWLFAG---KNNTCPM 50 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~c----ght~c~~ci~~~~~~~---~~~~CP~ 50 (416)
-..++|.+|.+.+.|---..| +|.||-.|-..+++.. ....||.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 456899999999999764443 7999999999988752 2345554
No 195
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.45 E-value=31 Score=37.08 Aligned_cols=234 Identities=11% Similarity=0.077 Sum_probs=136.2
Q ss_pred CCChHHHHHHHHH-Hh--cCcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcch
Q 014913 92 PINKAQITKLLNE-AA--KSPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRP 168 (416)
Q Consensus 92 ~~~~~~i~~lv~~-l~--~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~ 168 (416)
|++.+++...+.. +. ++++.|.+|-.-|..+-+. + ++......+|.+.. ..++.+
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~------------~~~~~v 59 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKT------------KYKPST 59 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTT------------TSCHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCC------------CCCHHH
Confidence 5667777777743 33 2568888888878776554 3 34556677776541 013678
Q ss_pred HHHHHHHHHhcCC--Chh-h--hhhhhccccCCccHHHHHHHhc-----CCHHHHHHHHHHHHHhhccc-CchhhHhhhh
Q 014913 169 VDEALSILCNLKI--SEL-G--LKSLVMGRNGTFVDSLTQIMQR-----GTYESRAYAVLLLKSMLEVA-EPMQLISLRQ 237 (416)
Q Consensus 169 ~~~A~~~L~~l~~--~~~-~--~~~~i~~~~G~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 237 (416)
+-.|+.+|.+... ..+ . .+..+. ..|+.++.. +..-++...+.+|..+.... ...+ .
T Consensus 60 r~fa~~~L~~~I~~l~~e~~~~~~~~lr-------~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W-----p 127 (980)
T 3ibv_A 60 RLICLQTLSEKVREWNNESNLLELQMIR-------DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW-----N 127 (980)
T ss_dssp HHHHHHHHHHHHHHCCTTTSHHHHHHHH-------HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC-----T
T ss_pred HHHHHHHHHHHHHhCChhhhHHHHHHHH-------HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC-----c
Confidence 8888888775432 111 0 123333 234444442 35678888999998887542 1222 3
Q ss_pred hHHHHHHHHhccCCCh-HHHHHHHHHHHHhCC----CC---c----c-----hHHHHhh---CcHHHHHHHhhc----cc
Q 014913 238 ELFVEVIQVLHDHISQ-QASKSALEVLVNICP----WG---R----N-----RIKGVEA---GAVSILIDLLLD----SS 293 (416)
Q Consensus 238 g~i~~Lv~lL~~~~~~-~~~~~A~~aL~nLs~----~~---~----n-----~~~i~~~---G~v~~Lv~lL~~----~~ 293 (416)
+.++-|+.+++.+ +. ......++.|..++. .. + . +..|.+. -+++....+|.. .
T Consensus 128 ~~i~~l~~~~~~~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~- 205 (980)
T 3ibv_A 128 DFFASLQGVIAAS-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK- 205 (980)
T ss_dssp THHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHhcCC-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC-
Confidence 5788888888765 44 445555666663322 11 0 1 2222221 124444555543 3
Q ss_pred chhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHh
Q 014913 294 LERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQ 366 (416)
Q Consensus 294 ~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~ 366 (416)
++.+...++.+|..-..+-.. ..++. ...++.+.+.+. ++..++.|+.+|..+.....+++....+++
T Consensus 206 -~~~l~~~~L~~l~s~i~wi~~-~~i~~-~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 206 -NYGTVGLCLQVYAQWVSWINI-NLIVN-EPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCH-HHHHC-HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHhhcCH-Hhhhc-chHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 567788888888888775322 23343 355566665433 468899999999998887765444444443
No 196
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=85.78 E-value=16 Score=39.29 Aligned_cols=221 Identities=9% Similarity=-0.041 Sum_probs=116.4
Q ss_pred hHHHHHHHHHhcCCChhhhhhhhccc----cCCccHHHHHHHh-----cCCHHHHHHHHHHHHHhhcccCchhhHhhhhh
Q 014913 168 PVDEALSILCNLKISELGLKSLVMGR----NGTFVDSLTQIMQ-----RGTYESRAYAVLLLKSMLEVAEPMQLISLRQE 238 (416)
Q Consensus 168 ~~~~A~~~L~~l~~~~~~~~~~i~~~----~G~~i~~Lv~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 238 (416)
..|.|+-+|..++.+-.+....+.+. + ..++.++.+++ ...+.++..+++++...+..-....... ..
T Consensus 459 ~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp-~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l--~~ 535 (980)
T 3ibv_A 459 LIEFALYETYIFGEGLRGPDAFFNEVDKSPT-VLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAI--PA 535 (980)
T ss_dssp HHHHHHHHHHHTTTTCCSGGGTBCSSSCCBC-HHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTH--HH
T ss_pred HHHHHHHHHHHHHhhccccccccCcccchhH-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhH--HH
Confidence 45666666666654321111111111 2 14444555555 4578999999999999986543222111 13
Q ss_pred HHHHHHH--HhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcc------c-chh-------------
Q 014913 239 LFVEVIQ--VLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDS------S-LER------------- 296 (416)
Q Consensus 239 ~i~~Lv~--lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~------~-~~~------------- 296 (416)
+++.++. -+.+. +..++..|+.++.+++..-.. .+ .+.++.++..+..- + .+.
T Consensus 536 ~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~--~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 536 LIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKK--QV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp HHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTT--TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred HHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhH--Hh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 3444444 44445 678999999999999864432 23 23455555555321 0 000
Q ss_pred ------hhHHHHHHHHHHHcC-ChhhHHHHHhcCCchHHHHHHHHhc----Chh-----hhHHHHHHHHHHhcCCCCh--
Q 014913 297 ------RASEMILTVLDLLCQ-CAEGRAELLKHGAGLAIVSKKILRV----SQV-----ASERAVRILLSISKFSATN-- 358 (416)
Q Consensus 297 ------~~~~~a~~~L~~La~-~~~~~~~i~~~~~~v~~Lv~~l~~~----~~~-----~~~~a~~~L~~L~~~~~~~-- 358 (416)
-..-.|++.|..... ..+.+..... ..++++++.+... ... .-.+.+.++..++++-.+.
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~--~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~ 688 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCD--SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGS 688 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccC
Confidence 113344555554443 3445555554 4566766655532 111 1225566777777754321
Q ss_pred H---HHHHHHhcChHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHhc
Q 014913 359 S---VLQEMLQIGVVAKLCLVLQV-DNSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 359 ~---~~~~i~~~G~v~~L~~ll~~-~~~~~~k~~A~~ll~~l~~~~ 400 (416)
+ +...+. .+.+.++..|.. ..+...|+++...++.+-...
T Consensus 689 ~~~p~~~~f~--~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~l 732 (980)
T 3ibv_A 689 EEVAWLASFN--KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVV 732 (980)
T ss_dssp CCCSHHHHHH--HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTT
T ss_pred CCCcHHHHHH--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 0 222222 344555555543 247889999988888776643
No 197
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=84.73 E-value=6.3 Score=42.76 Aligned_cols=154 Identities=5% Similarity=0.022 Sum_probs=83.5
Q ss_pred cHHHHHHHhc--CCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhcc----CCChHHHHHHHHHHHHhCCCCc
Q 014913 198 VDSLTQIMQR--GTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHD----HISQQASKSALEVLVNICPWGR 271 (416)
Q Consensus 198 i~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~~~~~~A~~aL~nLs~~~~ 271 (416)
.+.+-+.+++ .+...++.++++++.++........-..-...++.|+.+... ...+.++..+++++...+..-.
T Consensus 453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 3344444542 578899999999999985422211101112355555554432 1022333357788887764322
Q ss_pred chHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHH-hcC----CchHHHHHH----HHhcChhhhH
Q 014913 272 NRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELL-KHG----AGLAIVSKK----ILRVSQVASE 342 (416)
Q Consensus 272 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~-~~~----~~v~~Lv~~----l~~~~~~~~~ 342 (416)
....... .+++.|+..|.+. ++.++..|+.+|.+++..- +..+. ... .-++.+++. +...+.....
T Consensus 533 ~~~~~l~-~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~ 607 (1049)
T 3m1i_C 533 AHWNFLR-TVILKLFEFMHET--HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH 607 (1049)
T ss_dssp HCHHHHH-HHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred hHHHHHH-HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 2222222 3677777777776 7899999999999999742 22332 001 113333332 2223334455
Q ss_pred HHHHHHHHHhcCCC
Q 014913 343 RAVRILLSISKFSA 356 (416)
Q Consensus 343 ~a~~~L~~L~~~~~ 356 (416)
....++..+....+
T Consensus 608 ~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 608 TFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC
Confidence 55566666655444
No 198
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.67 E-value=1.7 Score=38.08 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=62.9
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
++..|.+.|.+.++.++..|+.+|-.+..+.+. .+..++.+...+..|..++.......+|+++..++........+.|
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 345566777777888999999999888887764 5778888888888888888776678899999999988887665554
Q ss_pred C
Q 014913 405 C 405 (416)
Q Consensus 405 ~ 405 (416)
-
T Consensus 125 ~ 125 (226)
T 3zyq_A 125 K 125 (226)
T ss_dssp G
T ss_pred c
Confidence 3
No 199
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=84.06 E-value=7.7 Score=36.90 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=78.5
Q ss_pred hCcHHHHHHHhhcc---------cchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHHHHH
Q 014913 279 AGAVSILIDLLLDS---------SLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRVSQVASERAVRILL 349 (416)
Q Consensus 279 ~G~v~~Lv~lL~~~---------~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~~L~ 349 (416)
.|++..|+.+|..- ..+......++.+|..|.....+...+..+..++..++..|.+....++..++.+|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 46677777777421 013466788999999999999999999998999988888776666788888999999
Q ss_pred HHhcCCC--C--hHHHHHHH------hcChHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 014913 350 SISKFSA--T--NSVLQEML------QIGVVAKLCLVLQVDNSMKTKDKAREVLKLH 396 (416)
Q Consensus 350 ~L~~~~~--~--~~~~~~i~------~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l 396 (416)
.+|.... . +.+...+. +..-+..|+..+..+.+...+-.+..+++.+
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 9998764 1 12222222 2345666777775443444444444444433
No 200
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=82.80 E-value=2.5 Score=36.89 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=62.9
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
++..|.+.|.+.++.++..|+.+|-.+..+.+. .+..++.+...+..|+.++....+..+|+++..++..-.......|
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 344566667777888899999999888887753 5777888888888898888776678899999999888887666555
Q ss_pred CC
Q 014913 405 CV 406 (416)
Q Consensus 405 ~~ 406 (416)
-.
T Consensus 122 ~~ 123 (220)
T 1dvp_A 122 KY 123 (220)
T ss_dssp SC
T ss_pred HH
Confidence 43
No 201
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=82.53 E-value=24 Score=30.73 Aligned_cols=145 Identities=9% Similarity=0.103 Sum_probs=89.0
Q ss_pred hhHHHHHHHHhcc----C------CChHHHHHHHHHHHHhCCCCcchHHHHh-hCcHHHHHHHhhcccchhhhHHHHHHH
Q 014913 237 QELFVEVIQVLHD----H------ISQQASKSALEVLVNICPWGRNRIKGVE-AGAVSILIDLLLDSSLERRASEMILTV 305 (416)
Q Consensus 237 ~g~i~~Lv~lL~~----~------~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~~~a~~~ 305 (416)
.+|+..|+.+|.. + .+......++.+|..+..+......+.+ .++|..|+..|.+. ...++..++..
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~leL 119 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHH
Confidence 4778888888752 1 0235567788999999877766666665 67888899888776 78888999999
Q ss_pred HHHHcCChh--h-HHHHHh---------cCCchHHHHHHHHhcC-hhhhHHHHHHHHHHhcCCCChH----HHHHHHhcC
Q 014913 306 LDLLCQCAE--G-RAELLK---------HGAGLAIVSKKILRVS-QVASERAVRILLSISKFSATNS----VLQEMLQIG 368 (416)
Q Consensus 306 L~~La~~~~--~-~~~i~~---------~~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~~~~~~~----~~~~i~~~G 368 (416)
|..+|..++ + ...+.+ +..-...+|+.+...+ ..-+-.+...+..|....++-+ +|.++.+.|
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 998887543 5 444432 1123344555443322 2334444445555666665533 445555666
Q ss_pred hHHHHHHHHhcCCcHH
Q 014913 369 VVAKLCLVLQVDNSMK 384 (416)
Q Consensus 369 ~v~~L~~ll~~~~~~~ 384 (416)
..+.+ .-|+...++.
T Consensus 200 l~~il-~~l~~~~~~~ 214 (233)
T 2f31_A 200 LHQVL-QELREIENED 214 (233)
T ss_dssp HHHHH-HHHHHCCCHH
T ss_pred hHHHH-HHHhccCCHH
Confidence 55555 5555433443
No 202
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=82.29 E-value=3.6 Score=33.09 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=61.0
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccCCC
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQVDNSMKTKDKAREVLKLHARAWKNSP 404 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~~k~~A~~ll~~l~~~~~~~~ 404 (416)
++..|.+.|.+.++..+..|+.+|-.+..+.+. .+..++.+...+..|+.++.. ..+.+|++...++........+.|
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-IFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566667777788888998888888887763 577777777788888888865 478999999999988887666665
Q ss_pred C
Q 014913 405 C 405 (416)
Q Consensus 405 ~ 405 (416)
-
T Consensus 121 ~ 121 (140)
T 3ldz_A 121 Q 121 (140)
T ss_dssp G
T ss_pred C
Confidence 4
No 203
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=81.45 E-value=10 Score=33.33 Aligned_cols=140 Identities=13% Similarity=0.066 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHhc--CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHH
Q 014913 94 NKAQITKLLNEAAK--SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDE 171 (416)
Q Consensus 94 ~~~~i~~lv~~l~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (416)
+.+.+..+...|.. ..++|..|+..|..+ .. ....++.+...+..+. +=.+++.
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~~~L~~ir~~va~D~--------------~WrVre~ 123 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DKEILIFMRDEVSKDN--------------NWRVQEV 123 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SHHHHHHHHHTGGGCS--------------CHHHHHH
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cHHHHHHHHHHhCCCC--------------CccHHHH
Confidence 35667777777763 358888898876655 21 1224555555344331 4578998
Q ss_pred HHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhh-HHHHHHHHhccC
Q 014913 172 ALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQE-LFVEVIQVLHDH 250 (416)
Q Consensus 172 A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~Lv~lL~~~ 250 (416)
+..++..++.. .. .. ..++.+...+.+++..+|..|...+..-+... . ...+.. +++.|-.+..++
T Consensus 124 lA~a~~~~~~~-------~~-pe-~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~--~k~dp~~ll~iL~~L~~D~ 190 (240)
T 3l9t_A 124 LAKAFDEFCKK-------IE-YK-KALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--Y--FKENPNEAIRRIADLKEDV 190 (240)
T ss_dssp HHHHHHHHHHH-------HC-TT-TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--T--TTTCHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHh-------cC-HH-HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--h--hhcCHHHHHHHHHHhcCCh
Confidence 88888766531 01 01 25678888999999999998888776533321 1 112223 444444455555
Q ss_pred CChHHHHHHHHHHHHhCCCCc
Q 014913 251 ISQQASKSALEVLVNICPWGR 271 (416)
Q Consensus 251 ~~~~~~~~A~~aL~nLs~~~~ 271 (416)
+.-++++.+++|..++..+.
T Consensus 191 -s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 191 -SEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp -CHHHHHHHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHHHHHHHhhhCH
Confidence 89999999999999998665
No 204
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=81.00 E-value=4.2 Score=33.10 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=63.6
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHh
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV-----DNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~-----~~~~~~k~~A~~ll~~l~~~ 399 (416)
++..|.+.|.+.++..+-.|+.+|-.+..+.+. .+..++.+...+..|+.++.. ..+..+|++...++..-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~-~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677777777889999999999999888774 678888888899999999853 24688999999999888876
Q ss_pred ccCCCC
Q 014913 400 WKNSPC 405 (416)
Q Consensus 400 ~~~~~~ 405 (416)
+.+.|-
T Consensus 128 f~~~p~ 133 (149)
T 3g2s_A 128 LPEEVK 133 (149)
T ss_dssp CTTCHH
T ss_pred hCCCch
Confidence 655543
No 205
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=80.89 E-value=0.34 Score=28.66 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.1
Q ss_pred CcccCcCccccCCCce
Q 014913 8 TFFLCPISLAIMKDPV 23 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv 23 (416)
+-|.||+|+.-+..|-
T Consensus 4 EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 4 EGFICPQCMKSLGSAD 19 (34)
T ss_dssp EEEECTTTCCEESSHH
T ss_pred cccCCcHHHHHcCCHH
Confidence 4588999988777764
No 206
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=80.41 E-value=3.3 Score=33.69 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=63.8
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHh
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV-----DNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~-----~~~~~~k~~A~~ll~~l~~~ 399 (416)
++..|.+.|.+.++.++..|+.+|-.+..+.+. .+..++.+...+..|+.++.. .....+|+++..++..-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455677778777889999999999999888774 688888888999999988863 23678999999999888776
Q ss_pred ccCCCC
Q 014913 400 WKNSPC 405 (416)
Q Consensus 400 ~~~~~~ 405 (416)
..+.|-
T Consensus 118 f~~~p~ 123 (148)
T 1mhq_A 118 FPEDIK 123 (148)
T ss_dssp CTTCHH
T ss_pred cCCCch
Confidence 655553
No 207
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=78.68 E-value=3.8 Score=34.16 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=60.5
Q ss_pred chHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHh
Q 014913 325 GLAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAKLCLVLQV-----DNSMKTKDKAREVLKLHARA 399 (416)
Q Consensus 325 ~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~L~~ll~~-----~~~~~~k~~A~~ll~~l~~~ 399 (416)
++..|.+.|.+.++.++..|+.+|-.+..+.+. .+..++.+...+..|+.++.. .....+|+++..++..-...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345677777777889999999999998887763 688888888999999999853 23578999999998887775
Q ss_pred ccC
Q 014913 400 WKN 402 (416)
Q Consensus 400 ~~~ 402 (416)
..+
T Consensus 130 f~~ 132 (171)
T 1juq_A 130 LPE 132 (171)
T ss_dssp CTT
T ss_pred cCC
Confidence 543
No 208
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=78.03 E-value=1.9 Score=31.73 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=34.4
Q ss_pred CcccCcCccccCCCceec-CCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTV-PTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l-~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.-+.|--|=...+ -.+ ...|.+|..|+...++. ...||+|+.++.
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV--SNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS--SSEETTTTEECC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhh--ccCCcccCCcCC
Confidence 3467877765555 344 55699999999998865 568999999996
No 209
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=77.43 E-value=78 Score=34.84 Aligned_cols=208 Identities=11% Similarity=0.047 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC-----h
Q 014913 109 PQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS-----E 183 (416)
Q Consensus 109 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~-----~ 183 (416)
++.|.+|-..|..+-...+ +...+...|.+.+ .+..++..|+..|.+.... +
T Consensus 27 ~~~r~~Ae~~L~~~~~~p~----------~~~~~~~~L~~~s-------------~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKEKCP----------ICVPCGLRLAEKT-------------QVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCT----------THHHHHHHHTSTT-------------SCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred hHHHHHHHHHHHHHHhCch----------HHHHHHHHHHccC-------------CCHHHHHHHHHHHHHHHHHhcccCC
Confidence 3568888888877644322 3344444443221 1467888888888875421 1
Q ss_pred hhhhhhhccccCCccHHHHHHHhc-------CCHHHHHHHHHHHHHhhcccC-chhhHhhhhhHHHHHHHHhccCCChHH
Q 014913 184 LGLKSLVMGRNGTFVDSLTQIMQR-------GTYESRAYAVLLLKSMLEVAE-PMQLISLRQELFVEVIQVLHDHISQQA 255 (416)
Q Consensus 184 ~~~~~~i~~~~G~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~~~ 255 (416)
++.+..+. ..++..+.+ .+..++...+.+|..++..+- ..+ .+.++.|+.+++++ ...
T Consensus 84 ~e~k~~Ir-------~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~~--~~~ 149 (1204)
T 3a6p_A 84 RLEKVYLK-------NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQG--ETQ 149 (1204)
T ss_dssp HHHHHHHH-------HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHTC--HHH
T ss_pred HHHHHHHH-------HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcCC--HHH
Confidence 22233333 234444432 357888999999999886532 233 36889999988754 466
Q ss_pred HHHHHHHHHHhCCC---Cc----chH-----HHHhh--CcHHHHHHHhhcc-----------------cchhhhHHHHHH
Q 014913 256 SKSALEVLVNICPW---GR----NRI-----KGVEA--GAVSILIDLLLDS-----------------SLERRASEMILT 304 (416)
Q Consensus 256 ~~~A~~aL~nLs~~---~~----n~~-----~i~~~--G~v~~Lv~lL~~~-----------------~~~~~~~~~a~~ 304 (416)
++.++.+|..|+.. .+ .|. .+.+. .+++.+..++... ..+..+...++.
T Consensus 150 ~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~ 229 (1204)
T 3a6p_A 150 TELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN 229 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHH
Confidence 78888888888642 11 111 12221 2333444444321 002335555666
Q ss_pred HHHHHcCChhhHHHHHhcC-CchHHHHHHHHhcChhhhHHHHHHHHHHhcCCC
Q 014913 305 VLDLLCQCAEGRAELLKHG-AGLAIVSKKILRVSQVASERAVRILLSISKFSA 356 (416)
Q Consensus 305 ~L~~La~~~~~~~~i~~~~-~~v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~ 356 (416)
++.+...+-.. ..+.... ..++.+... ..++..+..|+.+|..+.....
T Consensus 230 ~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~--l~~~~lr~~A~ecL~~i~s~~~ 279 (1204)
T 3a6p_A 230 TLAGYIDWVSM-SHITAENCKLLEILCLL--LNEQELQLGAAECLLIAVSRKG 279 (1204)
T ss_dssp HHHTTTTTSCH-HHHHTTTSHHHHHHHHG--GGCTTTHHHHHHHHHHHHTCCS
T ss_pred HHHHHHhccCH-HHHHhccchHHHHHHHH--cCCHHHHHHHHHHHHHHHhCCC
Confidence 66555443221 1222311 133444331 2256789999999999998654
No 210
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=75.03 E-value=20 Score=31.48 Aligned_cols=136 Identities=14% Similarity=0.113 Sum_probs=86.2
Q ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC--CCcchHH
Q 014913 198 VDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP--WGRNRIK 275 (416)
Q Consensus 198 i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~--~~~n~~~ 275 (416)
++..-.+.++...++|-.|+.+|..+ . .....++.+-..+..+.+..+++.++.++..++. +++ +
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-K-- 139 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-T--
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-H--
Confidence 34444555667889999999988877 2 1124667777634433389999999999999874 332 1
Q ss_pred HHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc-ChhhhHHHHHHHHHHhcC
Q 014913 276 GVEAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV-SQVASERAVRILLSISKF 354 (416)
Q Consensus 276 i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~-~~~~~~~a~~~L~~L~~~ 354 (416)
.++.+...+.++ +..++..|...+.--+..+ ....+..-+-+++..+... +.-++......|..+++.
T Consensus 140 -----~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 -----ALPIIDEWLKSS--NLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -----THHHHHHHHHCS--SHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHhcCC--CHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 567788888887 8888888877664322211 1111111112222223322 346888889999999998
Q ss_pred CCC
Q 014913 355 SAT 357 (416)
Q Consensus 355 ~~~ 357 (416)
+++
T Consensus 209 ~Pd 211 (240)
T 3l9t_A 209 FPD 211 (240)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 211
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=74.63 E-value=1.1 Score=39.96 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhcc
Q 014913 67 LRRLIQSWCTLNA 79 (416)
Q Consensus 67 l~~~i~~~~~~~~ 79 (416)
....|..|+..++
T Consensus 40 ~~~ri~~~~~~~p 52 (244)
T 1lrv_A 40 SGRQIDRFFRNNP 52 (244)
T ss_dssp CHHHHHHHHHHCG
T ss_pred cHHHHHHHHcCCH
Confidence 3556666665543
No 212
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=74.04 E-value=9.7 Score=31.13 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=60.6
Q ss_pred chHHHHHHHHh-cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHH-HHHHHhcC--CcHHHHHHHHHHHHHHHHhc
Q 014913 325 GLAIVSKKILR-VSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAK-LCLVLQVD--NSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 325 ~v~~Lv~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~-L~~ll~~~--~~~~~k~~A~~ll~~l~~~~ 400 (416)
++..|.+.|.+ .++.++-.|+.+|-.+..+.+. .+..++.+...+.. |+.++... ....+|+++..++..-....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 34456666664 5678889999999988888764 68888888888888 78888432 24588999999998888877
Q ss_pred cCCCC
Q 014913 401 KNSPC 405 (416)
Q Consensus 401 ~~~~~ 405 (416)
.+.|-
T Consensus 133 ~~~p~ 137 (157)
T 1elk_A 133 RSSPD 137 (157)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 76664
No 213
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=73.00 E-value=57 Score=35.37 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=79.2
Q ss_pred CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCChhhhh
Q 014913 108 SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKISELGLK 187 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~~~~~~ 187 (416)
+.+.+.-++++|.|+... ..++.|..++...... .......++..|+++|..++....
T Consensus 453 ~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~--------~~~~~~rvr~aAi~ALr~~~~~~p--- 510 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKS--------LDEYSTRVQAEAIMALRNIAKRDP--- 510 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSC--------CCCSCHHHHHHHHHTTTTGGGTCH---
T ss_pred ChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCcccc--------ccccchHHHHHHHHHHHHhhhhch---
Confidence 456677788888888653 3478888887532000 000124678889999998874332
Q ss_pred hhhccccCCccHHHHHHHh--cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHH
Q 014913 188 SLVMGRNGTFVDSLTQIMQ--RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVN 265 (416)
Q Consensus 188 ~~i~~~~G~~i~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 265 (416)
+. +-+.+..+.. ..+.++|..|+.+|....-. ...+..++..+..+.+.++..-....|.+
T Consensus 511 ~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~----------~~~l~~ia~~l~~E~~~QV~sfv~S~l~s 573 (1056)
T 1lsh_A 511 RK-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPS----------VALVSMVAVRLRREPNLQVASFVYSQMRS 573 (1056)
T ss_dssp HH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC----------HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC----------HHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 11 3345666763 45899999998888654211 13455666666654477787777888888
Q ss_pred hCCCCc
Q 014913 266 ICPWGR 271 (416)
Q Consensus 266 Ls~~~~ 271 (416)
|+....
T Consensus 574 la~s~~ 579 (1056)
T 1lsh_A 574 LSRSSN 579 (1056)
T ss_dssp HTTCCS
T ss_pred HHhcCC
Confidence 876554
No 214
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=72.11 E-value=0.1 Score=38.62 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=27.2
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..||.|+..|. + .-|+.+|..|=..+.. ...||.|+++++
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~---~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM---KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE---EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc---cccCcchhhHHH
Confidence 68999998764 2 2345558877433222 457999999886
No 215
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=71.49 E-value=2.4 Score=33.11 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=36.9
Q ss_pred cccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
=|+|..|...+.+ .....-|..||+.|..+.+.. ...|-.|++.+.
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC--CCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC--CCccccCCCCcC
Confidence 3899999999974 456678999999999887643 237999998887
No 216
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=70.27 E-value=16 Score=30.02 Aligned_cols=72 Identities=10% Similarity=0.109 Sum_probs=55.0
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh-HhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL-ISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
++..|.+.|.++++.++..|..+|-.+..+...... .+.....+..|+++++...++.+++.++..|..-+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 677788888899999999999999998877553332 333447888999999764477899988888776543
No 217
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=68.96 E-value=2.8 Score=28.31 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCCCCCCCccccCCCCCC-C-chhH-HHHHHHHHHhccC
Q 014913 45 NNTCPMTKQVLSSECELT-P-NHTL-RRLIQSWCTLNAS 80 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~-~-n~~l-~~~i~~~~~~~~~ 80 (416)
.+.||.|++.+. +.... + .+.. +..|++|+..+..
T Consensus 3 ~~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~ 40 (61)
T 2bay_A 3 HMLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGN 40 (61)
T ss_dssp -CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSB
T ss_pred eEEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCC
Confidence 578999999998 44433 3 3343 9999999988754
No 218
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=68.58 E-value=14 Score=29.49 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=55.3
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh-HhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL-ISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
++..|.+.|.++++.++..|..+|-.+..+...... .+.+...+..|+++++.. ++.+++..+..|...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 777888889999999999999988888877554322 233447888899998766 88999999988887653
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=68.38 E-value=3.4 Score=32.30 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=36.5
Q ss_pred CcccCcCccccCCC-ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKD-PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+=|.|..|...+.. +....-|.-||+.|..+.+ ...|+.|++.+.
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~ 74 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAID 74 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCC
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCC
Confidence 44899999998876 5567889999999987654 467999999887
No 220
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=68.36 E-value=1.4 Score=24.77 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=8.5
Q ss_pred CcccCcCccccCCCc
Q 014913 8 TFFLCPISLAIMKDP 22 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P 22 (416)
..|.||+|+..|-|+
T Consensus 2 ~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCEECTTSSCEESSH
T ss_pred CcccCccccccCcCh
Confidence 345666666655554
No 221
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=68.19 E-value=44 Score=36.32 Aligned_cols=100 Identities=7% Similarity=0.106 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCCh--H--HHHHHHHHHHHhCCCCcchHHHHhhCcHHH
Q 014913 209 TYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQ--Q--ASKSALEVLVNICPWGRNRIKGVEAGAVSI 284 (416)
Q Consensus 209 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~--~--~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~ 284 (416)
+....+.++|+++.++..-.....-..-...|+.|+.+....... . .....++++...+..-.....+.+. ++..
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-vl~~ 570 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-VVNK 570 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-HHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-HHHH
Confidence 688999999999999843222111111235777777777543111 1 2222335665555433333444443 5666
Q ss_pred HHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 285 LIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 285 Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
|++.+.+. ++.+++.|+.++..++.
T Consensus 571 L~~~m~~~--~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 571 LFEFMHET--HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHTTCC--STTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CHHHHHHHHHHHHHHHH
Confidence 77777666 78999999999999985
No 222
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=68.00 E-value=76 Score=29.31 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=131.7
Q ss_pred HHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhh----HHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHH
Q 014913 100 KLLNEAAK-SPQMQIKCLKKLRSIAAENETNKR----CLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALS 174 (416)
Q Consensus 100 ~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~----~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 174 (416)
.|+..|.. +-+.|..+.....++.+.....+- .+.. --..|.-++..- +++++--.+-.
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gY--------------e~~diAl~~G~ 145 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGY--------------ESPEIALNCGI 145 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGG--------------GSTTTHHHHHH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhh--------------ccchhHhHHHH
Confidence 33444422 347888888878788776654332 2332 123333333322 14666777778
Q ss_pred HHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh-Hh--hhhhHHHHHHHHhccCC
Q 014913 175 ILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL-IS--LRQELFVEVIQVLHDHI 251 (416)
Q Consensus 175 ~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~--~~~g~i~~Lv~lL~~~~ 251 (416)
.|+....++.-.+-++. . +.+-.+.+..+.++-++...|..++..|-..+..-.. .. .-.......-++|.++
T Consensus 146 mLRecir~e~la~~iL~--~-~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~- 221 (341)
T 1upk_A 146 MLRECIRHEPLAKIILW--S-EQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE- 221 (341)
T ss_dssp HHHHHHTSHHHHHHHHH--S-GGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHhHHHHHHHhc--c-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-
Confidence 88888887765444444 4 3888899999999999999999999987544321111 11 1224667778899999
Q ss_pred ChHHHHHHHHHHHHhCCCCcchHHHH----hhCcHHHHHHHhhcccchhhhHHHHHHHHHHHcCChh
Q 014913 252 SQQASKSALEVLVNICPWGRNRIKGV----EAGAVSILIDLLLDSSLERRASEMILTVLDLLCQCAE 314 (416)
Q Consensus 252 ~~~~~~~A~~aL~nLs~~~~n~~~i~----~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~~~~ 314 (416)
+--++..++..|..|-.+..|...|. +..-+..++.+|++. +..++-.|..+.-.-..++.
T Consensus 222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCSS
T ss_pred cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeCCC
Confidence 99999999999999988887765553 345678888999988 88999999988887665543
No 223
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=67.66 E-value=1.7 Score=27.62 Aligned_cols=13 Identities=23% Similarity=0.664 Sum_probs=10.9
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 4789999999984
No 224
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=63.63 E-value=2.6 Score=27.57 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.0
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 3799999999985
No 225
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=63.26 E-value=2.3 Score=28.04 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=11.0
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5789999999975
No 226
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=63.01 E-value=27 Score=28.16 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=56.4
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh-hHhhhhhHHHHHHHHhcc-----CCChHHHHHHHHHHHHhCC
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ-LISLRQELFVEVIQVLHD-----HISQQASKSALEVLVNICP 268 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~nLs~ 268 (416)
.++..|.+.|+++++.++..|..+|-.+..+..... ..+.....+..|+++++. ..+..+++.++..|..-+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 377788888999999999999999999988765333 333445899999999974 1267889998888887654
No 227
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=60.97 E-value=98 Score=28.16 Aligned_cols=149 Identities=9% Similarity=-0.011 Sum_probs=90.4
Q ss_pred ccHHHHHHHhcC------CHHHHHHHHHHHHHhhcccCchhhHhh-hhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC
Q 014913 197 FVDSLTQIMQRG------TYESRAYAVLLLKSMLEVAEPMQLISL-RQELFVEVIQVLHDHISQQASKSALEVLVNICPW 269 (416)
Q Consensus 197 ~i~~Lv~lL~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 269 (416)
.+..+.++|++| +.+..+.|...|..++-+-..-..|+. +...+..|+ +.... ....++.|++.|..--.+
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHcc
Confidence 455666777776 444567777777777654444455554 434555555 33443 667888888888875554
Q ss_pred Cc-chHHHHh--hCcHHHHHHHhhc----c-cchhhhHHHHHHHHHHHcCChhhHHHHHhcCCchHHHHHHHHhc--Chh
Q 014913 270 GR-NRIKGVE--AGAVSILIDLLLD----S-SLERRASEMILTVLDLLCQCAEGRAELLKHGAGLAIVSKKILRV--SQV 339 (416)
Q Consensus 270 ~~-n~~~i~~--~G~v~~Lv~lL~~----~-~~~~~~~~~a~~~L~~La~~~~~~~~i~~~~~~v~~Lv~~l~~~--~~~ 339 (416)
.+ ....+.+ ...|..+..-|.. . .....++..-+++|..|..++.. + . ..++..|.+++... +..
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~-~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-P-IYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C----CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-h-hccHHHHHHHHccCCCCHH
Confidence 43 3333332 3444444443332 1 01346777888999999988621 2 1 35778888877666 678
Q ss_pred hhHHHHHHHHHHh
Q 014913 340 ASERAVRILLSIS 352 (416)
Q Consensus 340 ~~~~a~~~L~~L~ 352 (416)
++..+..++..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888877765
No 228
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=60.59 E-value=1.1e+02 Score=28.75 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=118.8
Q ss_pred CCCCCCCChHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhc-ChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 014913 87 PTPKPPINKAQITKLLNEAAK-SPQMQIKCLKKLRSIAAE-NETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHE 164 (416)
Q Consensus 87 ~~~~~~~~~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~ 164 (416)
|........+.+..|+..... +.+.+...+..+++++.+ ++. .=..+++.++.+-...
T Consensus 16 ~~~~~~~~~~~v~~lln~A~~~~~~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~--------------- 75 (386)
T 3o2t_A 16 PRGSHMTTSERVVDLLNQAALITNDSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADK--------------- 75 (386)
T ss_dssp -----CCHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCS---------------
T ss_pred CCcccccHHHHHHHHHHhhhccChHHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCC---------------
Confidence 333333456888888888862 457899999999998664 332 2247788888887655
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHh--------hcccC------ch
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSM--------LEVAE------PM 230 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l--------~~~~~------~~ 230 (416)
+.+++...+..|...+.. ..+++. ..++.|..+|+..++.+...+..+..++ +.... ..
T Consensus 76 ~~~vRk~~a~FieEa~~~---~~el~~----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~ 148 (386)
T 3o2t_A 76 SIEVRKFVIGFIEEACKR---DIELLL----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEAC 148 (386)
T ss_dssp CHHHHHHHHHHHHHHHHH---CGGGHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 578999999988877642 223333 3888999999888888887766554443 22211 12
Q ss_pred hhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh----CCCC-c-----------------------chHHHHh--hC
Q 014913 231 QLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI----CPWG-R-----------------------NRIKGVE--AG 280 (416)
Q Consensus 231 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL----s~~~-~-----------------------n~~~i~~--~G 280 (416)
+..+. ..-..++.++.++ +..++-.|+..+-.+ +... + +...+-+ .|
T Consensus 149 W~~m~--~lK~~Il~~~ds~-n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~ 225 (386)
T 3o2t_A 149 WDMVS--AMAGDIILLLDSD-NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKA 225 (386)
T ss_dssp HHHHH--HHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHhccC-CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHH
Confidence 22222 2445566777777 888888888766653 2110 0 1122222 46
Q ss_pred cHHHHHHHhhcccchhhhHHHHHHHHHHHcC
Q 014913 281 AVSILIDLLLDSSLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 281 ~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La~ 311 (416)
.+..|+..+.....+......++..|..|++
T Consensus 226 lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak 256 (386)
T 3o2t_A 226 ALEQLLKFMVHPAISSINLTTALGSLANIAR 256 (386)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 7777888887542123344456666666665
No 229
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.55 E-value=19 Score=31.29 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=56.4
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCch-hhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPM-QLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 268 (416)
++..|.+-|.++++.++..|..+|-.+..+.... ...+.....+..|+++++...+..+++.++..|...+.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7778888899999999999999999998776543 22333447888899998765477899999998887654
No 230
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.50 E-value=35 Score=27.48 Aligned_cols=72 Identities=15% Similarity=0.099 Sum_probs=56.1
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh-hHhhhhhHHHHHHHHhcc-----CCChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ-LISLRQELFVEVIQVLHD-----HISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~nLs~ 268 (416)
++..|.+.|.++++.++..|..+|-.+..+..... ..+.....+..|+++++. ..+..+++..+..|..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999987765443 223444789999999963 2367899999888887654
No 231
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=59.39 E-value=2.9 Score=27.28 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=11.1
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|+.
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5799999999985
No 232
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=58.99 E-value=3.8 Score=30.34 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHc
Q 014913 30 TYDRESIEKWLFA 42 (416)
Q Consensus 30 t~c~~ci~~~~~~ 42 (416)
-|||.|+.+|..+
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999876
No 233
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=58.81 E-value=3.7 Score=31.00 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=20.6
Q ss_pred cCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 18 IMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 18 ~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
++.+|....||++|+. .-+....||.|+..-
T Consensus 64 ~v~p~~C~~CG~~F~~-------~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKA-------EINIPSRCPKCKSEW 94 (105)
T ss_dssp EECCCBBTTTCCBCCC-------CSSCCSSCSSSCCCC
T ss_pred EEECcChhhCcCeecc-------cCCCCCCCcCCCCCc
Confidence 3566777899999931 112257899997543
No 234
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=58.26 E-value=3.1 Score=27.54 Aligned_cols=13 Identities=31% Similarity=0.718 Sum_probs=10.8
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|+.
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 3789999999985
No 235
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=58.18 E-value=3.5 Score=29.64 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.1
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|..
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4789999999985
No 236
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=58.08 E-value=4.1 Score=30.15 Aligned_cols=13 Identities=31% Similarity=0.856 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHc
Q 014913 30 TYDRESIEKWLFA 42 (416)
Q Consensus 30 t~c~~ci~~~~~~ 42 (416)
-|||.|+.+|..+
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999975
No 237
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=57.55 E-value=32 Score=28.43 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=55.4
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhh-HhhhhhHHHHHHHHhcc-----CCChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQL-ISLRQELFVEVIQVLHD-----HISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~nLs~ 268 (416)
++..|.+.|+++++.++..|..+|-.+..+...... .+.....+..|++++.. ..+..+++.++..|..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 777888889999999999999999999877543222 33445789999999963 1257899999888887654
No 238
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=55.97 E-value=1.2e+02 Score=27.59 Aligned_cols=139 Identities=8% Similarity=0.073 Sum_probs=84.2
Q ss_pred cchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhh--hhhHHHHH
Q 014913 166 SRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISL--RQELFVEV 243 (416)
Q Consensus 166 ~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L 243 (416)
.+..+.|+.-|..++-+-+---+++.... ..+..|+ +.......+++.|+.+|.....++......+. .+..+..+
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef-~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEF-ALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHH-HHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcH-HHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 44577888999999966554455664112 2444444 33445778999999999988876543322211 12333333
Q ss_pred H----HHhccC--CChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc
Q 014913 244 I----QVLHDH--ISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 244 v----~lL~~~--~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La 310 (416)
. .+++.+ .....++.-+.+|..|..++. .+. ...+..|++++.....+..++..++.++..+-
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 3 333221 144677788899999988762 121 33567777777543236778888888877664
No 239
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=55.36 E-value=10 Score=29.66 Aligned_cols=48 Identities=8% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCcccCcCccccCC---CceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMK---DPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~---~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++=|.|..|...+. .+....-|.-||..|..+.+.. ...|..|++.+.
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~ 77 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ--DGLCASCDKRIR 77 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC--CEECTTTCCEEC
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC--ccChhhcCCccC
Confidence 34589999999996 3667788999999998886632 237999998886
No 240
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.21 E-value=24 Score=30.47 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=53.9
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchh-hHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhC
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQ-LISLRQELFVEVIQVLHDHISQQASKSALEVLVNIC 267 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 267 (416)
++..|.+.|.++++.++..|..+|-.+..+..... ..+.....+..|++++++..+..+++.++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 67778888889999999999999999987754322 223344688899999876546788888887777654
No 241
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=54.74 E-value=3.8 Score=28.58 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=11.0
Q ss_pred CCCCcccCcCccc
Q 014913 5 DVPTFFLCPISLA 17 (416)
Q Consensus 5 ~~~~~~~Cpic~~ 17 (416)
++|+++.||+|..
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 3789999999985
No 242
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=52.64 E-value=3.5 Score=34.89 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=37.1
Q ss_pred CcccCcCccccCCC---ceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKD---PVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+=|+|..|...|.+ +....-|.-||..|..+.+.. ...|+.|++.+.
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~ 80 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGACSACGQSIP 80 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC--CEECTTTCCEEC
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc--CCccccCCCccc
Confidence 44899999998875 777788999999998876632 126999998886
No 243
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=51.49 E-value=2.8e+02 Score=30.43 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHHHHHHhc-----ChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHHHHHHhcCCC
Q 014913 108 SPQMQIKCLKKLRSIAAE-----NETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEALSILCNLKIS 182 (416)
Q Consensus 108 ~~~~~~~Al~~L~~l~~~-----~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~~~L~~l~~~ 182 (416)
++.+|.-|+..|++.... +++.|..|.+ . |+..+.+.... . ......++.....++..++..
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~----ll~~l~~~~~~------~--~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-S----VMELIANGTLN------I--LEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-H----HHHHHHHSSCC------T--TSSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-H----HHHHHHhhccc------c--ccccHHHHHHHHHHHHHHHHH
Confidence 468899999999998754 2334444432 2 34444322100 0 001356777777788877754
Q ss_pred hhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcc---cCc----hhh----Hhh--hhhHHHHHHHHhcc
Q 014913 183 ELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEV---AEP----MQL----ISL--RQELFVEVIQVLHD 249 (416)
Q Consensus 183 ~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~---~~~----~~~----~~~--~~g~i~~Lv~lL~~ 249 (416)
+- -.+=+ +.++.|+.++++ +...++.+..+|..|+.. .+. +.. ... -...++.+..++.+
T Consensus 127 d~-----p~~Wp-~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~ 199 (1204)
T 3a6p_A 127 EW-----PQHWP-DMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQE 199 (1204)
T ss_dssp HS-----TTTCT-THHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hC-----cccch-HHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 11125 488889988876 566688899999988743 111 000 001 01234444555542
Q ss_pred C------------------CChHHHHHHHHHHHHhCCCCcchHHHHhhC--cHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 014913 250 H------------------ISQQASKSALEVLVNICPWGRNRIKGVEAG--AVSILIDLLLDSSLERRASEMILTVLDLL 309 (416)
Q Consensus 250 ~------------------~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G--~v~~Lv~lL~~~~~~~~~~~~a~~~L~~L 309 (416)
. .+..+...++.++.+....-+. ..+++.. .++.+..++. +++++..|+.+|..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~----~~~lr~~A~ecL~~i 274 (1204)
T 3a6p_A 200 NVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN----EQELQLGAAECLLIA 274 (1204)
T ss_dssp HHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG----CTTTHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC----CHHHHHHHHHHHHHH
Confidence 1 0234666777777765544332 2233432 5666665544 357889999999999
Q ss_pred cCC
Q 014913 310 CQC 312 (416)
Q Consensus 310 a~~ 312 (416)
...
T Consensus 275 ~s~ 277 (1204)
T 3a6p_A 275 VSR 277 (1204)
T ss_dssp HTC
T ss_pred HhC
Confidence 863
No 244
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=50.76 E-value=18 Score=29.70 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=35.2
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
++=|.|..|...+.+--...-|.-||..|..+.+ ...|..|++.+.
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~~C~~C~~~I~ 76 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIP 76 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH----SCBCTTTCCBCC
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc----cccccccccccC
Confidence 3458999999888775445678999999988765 346888887775
No 245
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=50.25 E-value=27 Score=32.96 Aligned_cols=70 Identities=13% Similarity=0.101 Sum_probs=42.1
Q ss_pred cccCcCccccCCCceec--CCcCcccHHHHHHHHHcC--------CCCCCCCCCccccCCCCCCCchhHHHHHHHHHHhc
Q 014913 9 FFLCPISLAIMKDPVTV--PTGITYDRESIEKWLFAG--------KNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLN 78 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l--~cght~c~~ci~~~~~~~--------~~~~CP~~~~~l~~~~~l~~n~~l~~~i~~~~~~~ 78 (416)
+..|.+|.+=-.==..- .|...||..||.+.+..+ ....|=.|.-.-. ...+.+-..-+..++.|..+.
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~-~~ll~~r~~w~~~~~~f~~~~ 171 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSR-SGLLQRRRKWRSQLKAFYDRE 171 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCE-ETTEEBCSSHHHHHHHHHHHH
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcch-HhhhhhhhhHHHHHHHHHhhc
Confidence 46899998743211112 678899999999987332 3678888854322 333333333455666666554
Q ss_pred c
Q 014913 79 A 79 (416)
Q Consensus 79 ~ 79 (416)
.
T Consensus 172 ~ 172 (386)
T 2pv0_B 172 S 172 (386)
T ss_dssp C
T ss_pred c
Confidence 3
No 246
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=49.55 E-value=3.8 Score=22.03 Aligned_cols=11 Identities=27% Similarity=0.763 Sum_probs=8.0
Q ss_pred ccCcCccccCC
Q 014913 10 FLCPISLAIMK 20 (416)
Q Consensus 10 ~~Cpic~~~~~ 20 (416)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 46888888663
No 247
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=49.36 E-value=14 Score=27.35 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=25.1
Q ss_pred CCCCCCCCccccCCCCCCCc-hhH-HHHHHHHHHhccC
Q 014913 45 NNTCPMTKQVLSSECELTPN-HTL-RRLIQSWCTLNAS 80 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n-~~l-~~~i~~~~~~~~~ 80 (416)
.+.||+|...+.++..+... +.+ +..|+.|...+..
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~ 59 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT 59 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCB
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCC
Confidence 57899999999833333333 444 8889999876543
No 248
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=49.02 E-value=14 Score=30.77 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=32.8
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+=|.|..|...|.+--...-|.-||..|..+.+ ...|..|++.+.
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT----SCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc----ccccccCCCccC
Confidence 448888888877664444668889998876643 457999988776
No 249
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=48.80 E-value=5.8 Score=29.46 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=33.7
Q ss_pred CcccCcCccccCCCc-eecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDP-VTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P-v~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+=|.|..|...+.+. ....-|..||+.|..+.+ ...|..|++.+.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED----SPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC----CCBCSSSCCBCC
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc----CCccccCCCccc
Confidence 348999999888664 455778999998865432 467999988886
No 250
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=48.51 E-value=1.3e+02 Score=32.73 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=84.8
Q ss_pred ccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHhCCC-----Cc
Q 014913 197 FVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNICPW-----GR 271 (416)
Q Consensus 197 ~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-----~~ 271 (416)
.+..++..+.+++.+.|..|-..|..+-.. .++...+..+|..+.+..++.-|+.+|.+.-.. ++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s----------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEH----------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCC----------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 566677777777888888888888666432 234445555565444789999999999986431 22
Q ss_pred chHHHHhhCcHHHHHHHhhcc---cchhhhHHHHHHHHHHHcCC--hhhHHHHHhcCCchHHHHHHHHhcChhhhHHHHH
Q 014913 272 NRIKGVEAGAVSILIDLLLDS---SLERRASEMILTVLDLLCQC--AEGRAELLKHGAGLAIVSKKILRVSQVASERAVR 346 (416)
Q Consensus 272 n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~~~a~~~L~~La~~--~~~~~~i~~~~~~v~~Lv~~l~~~~~~~~~~a~~ 346 (416)
.....++...+..+...-.++ ..++.+....+.+|..++.. ++.+ ...++-+++.+ +.+....+....
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W------p~fi~dLv~~~-~~~~~~~~~~L~ 171 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW------PTFISDIVGAS-RTSESLCQNNMV 171 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC------TTHHHHHHHHH-HHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc------cHHHHHHHHHh-CCCHHHHHHHHH
Confidence 333344444555555543321 01345667788888888753 3443 24455566643 335566777888
Q ss_pred HHHHHhcC
Q 014913 347 ILLSISKF 354 (416)
Q Consensus 347 ~L~~L~~~ 354 (416)
+|..|+..
T Consensus 172 IL~~L~EE 179 (1073)
T 3gjx_A 172 ILKLLSEE 179 (1073)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 251
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.42 E-value=62 Score=28.53 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=63.3
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhc--------CCHHHHHHHHHHHHHhhcccCchhhHhhh
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQR--------GTYESRAYAVLLLKSMLEVAEPMQLISLR 236 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 236 (416)
++..+--++++++|+-.+..-.+.++..+ .....+++.+.+ .+..++..++..+.|++........ .
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~--~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESN--QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSH--HHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcc--hhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 46788899999999998876223444422 134455554421 3567889999999999854221111 1
Q ss_pred hhHHHHHHHHhc---------cCCChHHHHHHHHHHHHhCCCCcc
Q 014913 237 QELFVEVIQVLH---------DHISQQASKSALEVLVNICPWGRN 272 (416)
Q Consensus 237 ~g~i~~Lv~lL~---------~~~~~~~~~~A~~aL~nLs~~~~n 272 (416)
......++.++. .. +.++..-++-||.+|...+..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~-d~Ea~yR~LvAlGtL~~~~~~ 221 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQE-CEEAAYRLTVAYGNLATVEPT 221 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHH-SHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHhcccccccC-CHHHHHHHHHHHHHHHhCcHH
Confidence 123344555544 23 678888888899988764443
No 252
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=47.30 E-value=13 Score=25.85 Aligned_cols=45 Identities=7% Similarity=-0.044 Sum_probs=32.8
Q ss_pred CCcccCcCccccCCC-ceecCCcCcccH-HHHHHHHHcCCCCCCCCCCccc
Q 014913 7 PTFFLCPISLAIMKD-PVTVPTGITYDR-ESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~-Pv~l~cght~c~-~ci~~~~~~~~~~~CP~~~~~l 55 (416)
++=|.|..|...+.+ +....-|.-||+ .|..+.+ ...|-.|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f----~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF----GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS----SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh----CccCCCcCCce
Confidence 345899999988876 566677889998 5887654 34688886554
No 253
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=46.58 E-value=13 Score=26.62 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCCCCCCccccCCCCCCCchhH-HHHHHHHHHhccC
Q 014913 45 NNTCPMTKQVLSSECELTPNHTL-RRLIQSWCTLNAS 80 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n~~l-~~~i~~~~~~~~~ 80 (416)
.+.||+|...+.++..+...+.+ +..|+.|...+..
T Consensus 14 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~ 50 (85)
T 2kr4_A 14 EFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPT 50 (85)
T ss_dssp TTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSB
T ss_pred heECcccCchhcCCeECCCCCEECHHHHHHHHhcCCC
Confidence 58899999999843344444554 8889999886543
No 254
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=46.25 E-value=14 Score=23.30 Aligned_cols=40 Identities=8% Similarity=0.078 Sum_probs=23.2
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.|++|...|.....+. .-+.. -.....+.|+.|++.+.
T Consensus 4 ~~~C~~C~~~f~~~~~l~-------~H~~~-h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLN-------IHLRT-HTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCHHHHH-------HHHHH-HHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCChHHHH-------HHHHH-cCCCCCcCCCCCcchhC
Confidence 478998888877763221 01111 11122678999988775
No 255
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=46.10 E-value=91 Score=27.56 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 168 PVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 168 ~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
.+-..+.-..++..+.+ ..+. + +.++.++.+-...+.++|...+..|...+..+. .+ ...+++.|..+|
T Consensus 31 ~kl~~L~qa~el~~~~d--p~ll---~-~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~l--~~~~l~~L~~Ll 99 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSC--AELA---E-EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---EL--LPHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHTTTT--GGGH---H-HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---GG--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccC--HhHH---H-HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHH
Confidence 44444455555554432 2233 3 377777776666789999999999998874421 22 235889999999
Q ss_pred ccCCChHHHHHHHHHHHH
Q 014913 248 HDHISQQASKSALEVLVN 265 (416)
Q Consensus 248 ~~~~~~~~~~~A~~aL~n 265 (416)
+++ ++.+.+.+..+..+
T Consensus 100 ~d~-d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 100 RDN-SAQVIKRVIQACGS 116 (257)
T ss_dssp TCS-CHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 987 88888887665433
No 256
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=46.03 E-value=14 Score=27.49 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCCCCCCCccccCCCCCCCchhH-HHHHHHHHHhccC
Q 014913 45 NNTCPMTKQVLSSECELTPNHTL-RRLIQSWCTLNAS 80 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n~~l-~~~i~~~~~~~~~ 80 (416)
.+.||+|...+.++..+...+.+ +..|+.|...+..
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~ 65 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPT 65 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSB
T ss_pred hhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCC
Confidence 57899999999833334444444 8889999876543
No 257
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.59 E-value=3.1 Score=30.32 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=17.8
Q ss_pred cCcCccccCC-----CceecC-CcCcccHHHHHHH
Q 014913 11 LCPISLAIMK-----DPVTVP-TGITYDRESIEKW 39 (416)
Q Consensus 11 ~Cpic~~~~~-----~Pv~l~-cght~c~~ci~~~ 39 (416)
.||-|...|. .+|+-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 5998877553 134443 7777777665444
No 258
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=43.60 E-value=24 Score=23.97 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=20.7
Q ss_pred CCcccCcCcccc-CCCceecCCcCcccH
Q 014913 7 PTFFLCPISLAI-MKDPVTVPTGITYDR 33 (416)
Q Consensus 7 ~~~~~Cpic~~~-~~~Pv~l~cght~c~ 33 (416)
+...+|..|.+- ..-++.-.||.+||.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCG 40 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECT
T ss_pred CcCCcChhhCCccCccCEEeecCCEecc
Confidence 355799999974 444677789999995
No 259
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=42.86 E-value=3 Score=29.93 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=22.8
Q ss_pred cccCcC--ccccCCC-----ceec------CCcCcccHHHHHHHH
Q 014913 9 FFLCPI--SLAIMKD-----PVTV------PTGITYDRESIEKWL 40 (416)
Q Consensus 9 ~~~Cpi--c~~~~~~-----Pv~l------~cght~c~~ci~~~~ 40 (416)
-..||- |...+.. +|+- .||+.||..|-+.|.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYH 69 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCcccc
Confidence 467888 8876642 3444 589999999987763
No 260
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=41.07 E-value=24 Score=28.60 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=55.0
Q ss_pred chHHHHHHHHh-cChhhhHHHHHHHHHHhcCCCChHHHHHHHhcChHHH-HHHHHhcC--CcHHHHHHHHHHHHHHHHhc
Q 014913 325 GLAIVSKKILR-VSQVASERAVRILLSISKFSATNSVLQEMLQIGVVAK-LCLVLQVD--NSMKTKDKAREVLKLHARAW 400 (416)
Q Consensus 325 ~v~~Lv~~l~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~~G~v~~-L~~ll~~~--~~~~~k~~A~~ll~~l~~~~ 400 (416)
++..|.+.|.. .+...+..|+.+|-.+..+.+. .+..++.+...+.- |+.++... ....+|+++..++.......
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~-~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP-SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH-HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 44556666653 2556677888888888887764 57777776666653 66666532 23579999999999888877
Q ss_pred cCCCC
Q 014913 401 KNSPC 405 (416)
Q Consensus 401 ~~~~~ 405 (416)
.+.|-
T Consensus 133 ~~~p~ 137 (152)
T 3rru_A 133 PGGVD 137 (152)
T ss_dssp SSSCC
T ss_pred CCCCc
Confidence 66663
No 261
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=40.93 E-value=47 Score=29.35 Aligned_cols=102 Identities=9% Similarity=0.055 Sum_probs=63.5
Q ss_pred cCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccC-------CChHHHHHHHHHHHHhCCCCc-chHHHHh
Q 014913 207 RGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDH-------ISQQASKSALEVLVNICPWGR-NRIKGVE 278 (416)
Q Consensus 207 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~~~~~~A~~aL~nLs~~~~-n~~~i~~ 278 (416)
++++..+--+++++.|+-.+....+.++........++..+.+. .+..++-+++..++|++...- ++. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 45677888899999999766553343444434455666654221 145677888999999975221 111 1
Q ss_pred hCcHHHHHHHhhc----c---cchhhhHHHHHHHHHHHcC
Q 014913 279 AGAVSILIDLLLD----S---SLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 279 ~G~v~~Lv~lL~~----~---~~~~~~~~~a~~~L~~La~ 311 (416)
......+++.+.. . ..+.+....++.+|.+|..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 2344566666652 1 1266888889999998875
No 262
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.86 E-value=20 Score=24.27 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=9.6
Q ss_pred cCcCccccCCCceecCCcCccc
Q 014913 11 LCPISLAIMKDPVTVPTGITYD 32 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~c 32 (416)
.|+.|.+.+.+.++..-|.+|-
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H 28 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWH 28 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEEC
T ss_pred cCccCCCEecceEEEECccccc
Confidence 3555554444444333444333
No 263
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=40.60 E-value=1.9e+02 Score=25.44 Aligned_cols=143 Identities=11% Similarity=0.171 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhcChhhhhHHhhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCcchHHHHH
Q 014913 95 KAQITKLLNEAAK-SPQMQIKCLKKLRSIAAENETNKRCLESAGAVEFLASFVTNSNAMEESPEGFDNLHESSRPVDEAL 173 (416)
Q Consensus 95 ~~~i~~lv~~l~~-~~~~~~~Al~~L~~l~~~~~~~~~~i~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~A~ 173 (416)
.+.+..|+...+. +.+.+...+..+++++.+.+- .. =..+++.++.+-.+. +.++++..+
T Consensus 14 ~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp--~l--l~~~l~~il~~~~~~---------------~~~vrk~~~ 74 (257)
T 3gs3_A 14 RAKVVDWCNELVIASPSTKCELLAKVQETVLGSCA--EL--AEEFLESVLSLAHDS---------------NMEVRKQVV 74 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTG--GG--HHHHHHHHHGGGGCS---------------CHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCH--hH--HHHHHHHHHHhccCC---------------hHHHHHHHH
Confidence 3566777777752 447899999999998776421 11 134567777764333 578999999
Q ss_pred HHHHhcCCChhhhhhhhccccCCccHHHHHHHhcCCHHHHHHHHHHHHHh--------hcccC------chhhHhhhhhH
Q 014913 174 SILCNLKISELGLKSLVMGRNGTFVDSLTQIMQRGTYESRAYAVLLLKSM--------LEVAE------PMQLISLRQEL 239 (416)
Q Consensus 174 ~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~~~~~~~~~~a~~~L~~l--------~~~~~------~~~~~~~~~g~ 239 (416)
..|...+... ..+. . ..++.|..+|+..++.+...+..+..++ +.... ..+..+. ..
T Consensus 75 ~Fi~e~~~~k---~~l~---~-~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~l 145 (257)
T 3gs3_A 75 AFVEQVCKVK---VELL---P-HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LI 145 (257)
T ss_dssp HHHHHHHHHC---GGGH---H-HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHH---HHHH---H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HH
Confidence 9988776222 2333 3 4888999999988888887776654443 22211 1222221 24
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHh
Q 014913 240 FVEVIQVLHDHISQQASKSALEVLVNI 266 (416)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~A~~aL~nL 266 (416)
-..++.++.++ +..++-.|+..+-.+
T Consensus 146 K~~Il~~~~s~-n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 146 KAQILDMIDNE-NDGIRTNAIKFLEGV 171 (257)
T ss_dssp HHHHHHGGGSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC-CcchHHHHHHHHHHH
Confidence 45566677777 788888887766653
No 264
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.52 E-value=27 Score=23.71 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=24.0
Q ss_pred cccCcCccccCCCc-eecCCcCcccHHHHHHHHHc
Q 014913 9 FFLCPISLAIMKDP-VTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 9 ~~~Cpic~~~~~~P-v~l~cght~c~~ci~~~~~~ 42 (416)
=|.|..|...+.+- ....-|.-||+.|..+.+..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 37888888777543 45566788888888777653
No 265
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.12 E-value=1.2 Score=32.07 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=24.0
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..||.|...|.- .-++.+|..|=..+- . ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~-~--~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFS-L--QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEE-E--EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCC-C--cccCcchhhHHH
Confidence 579999976642 233444666632211 1 237999988885
No 266
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=39.63 E-value=14 Score=24.47 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=22.7
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHH---cCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLF---AGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~---~~~~~~CP~~~~~l~ 56 (416)
|.|++|...|..+-.| .+-.. ....+.|+.|++.+.
T Consensus 5 y~C~~C~k~F~~~~~L-----------~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 5 FFCNFCGKTYRDASGL-----------SRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp EECTTTCCEESSHHHH-----------HHHHHHHHTCCCEECTTTCCEES
T ss_pred ccCCCCCCEeCCHHHH-----------HHHHHHhCCCcCeECCCCCCCcC
Confidence 7788877777665322 22211 123688999998886
No 267
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=39.32 E-value=92 Score=25.13 Aligned_cols=72 Identities=6% Similarity=0.120 Sum_probs=51.6
Q ss_pred ccHHHHHHHh-cCCHHHHHHHHHHHHHhhcccCchhh-HhhhhhHHHH-HHHHhccC--CChHHHHHHHHHHHHhCC
Q 014913 197 FVDSLTQIMQ-RGTYESRAYAVLLLKSMLEVAEPMQL-ISLRQELFVE-VIQVLHDH--ISQQASKSALEVLVNICP 268 (416)
Q Consensus 197 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~-Lv~lL~~~--~~~~~~~~A~~aL~nLs~ 268 (416)
++..|.+.|+ ++++.++..|..+|-.+..+...... .+.+...+.. |++++... ....+++.++..|..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 6777888887 47899999999999999877643333 2334478887 89988532 145788888888776543
No 268
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.70 E-value=15 Score=23.11 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=22.3
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHc---CCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFA---GKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~---~~~~~CP~~~~~l~ 56 (416)
|.|++|...|..+.. +..-... ...+.|+.|++.+.
T Consensus 2 ~~C~~C~~~f~~~~~-----------l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSM-----------LKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHH-----------HHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHHH-----------HHHHHHhcCCCCCccCCCCCchhc
Confidence 678888887776532 2222221 12578999988775
No 269
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.45 E-value=2.4 Score=39.09 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=30.7
Q ss_pred CCcccCcCccccCCCceec----CCc--CcccHHHHHHHHHcCCCCCCCCCCcc
Q 014913 7 PTFFLCPISLAIMKDPVTV----PTG--ITYDRESIEKWLFAGKNNTCPMTKQV 54 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l----~cg--ht~c~~ci~~~~~~~~~~~CP~~~~~ 54 (416)
...-.||+|+....--|+- .-| +-+|..|=..|--. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~--R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV--RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC--TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec--CcCCcCCCCC
Confidence 3457899999765444443 245 45788887777432 5689999875
No 270
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.20 E-value=28 Score=25.02 Aligned_cols=36 Identities=19% Similarity=0.511 Sum_probs=19.6
Q ss_pred cCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 11 LCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|+.|.+...+.++..-|..|=..| +.|-.|+..|.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~C----------F~C~~C~~~L~ 62 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEE----------FNCAHCKNTMA 62 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTT----------CBCSSSCCBCS
T ss_pred CCccCCCEecceEEEECCccccccC----------CccCCCCCCCC
Confidence 4666666665555555555444322 45666665554
No 271
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=36.20 E-value=1.9e+02 Score=27.52 Aligned_cols=132 Identities=8% Similarity=0.012 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCChhhhhhhhccccCCccHHHHH-HHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 169 VDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQ-IMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 169 ~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
+--++-+|+-+..+... . +.+..+++ .+.+.++..+--+.+++.|+-........++.+......++..+
T Consensus 243 ~FPaLDLLRl~v~~p~~--------~-~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i 313 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPY--------S-SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 313 (425)
T ss_dssp CHHHHHHHHHHGGGCSC--------G-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHcCCch--------H-HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHH
Confidence 44466666655544321 1 12333332 23345677888888999998666554444554434456666655
Q ss_pred ccC-------CChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhh-----c--ccchhhhHHHHHHHHHHHcCC
Q 014913 248 HDH-------ISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLL-----D--SSLERRASEMILTVLDLLCQC 312 (416)
Q Consensus 248 ~~~-------~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~-----~--~~~~~~~~~~a~~~L~~La~~ 312 (416)
... .+..++-+++..++|++.... .+. +...++.+++.+. . ...+.++...++.+|.+|...
T Consensus 314 ~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 314 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 311 145678888899999986321 111 1234456777766 1 012678899999999999853
No 272
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=35.64 E-value=21 Score=27.68 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=24.4
Q ss_pred ccCcCccccCCCce-ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPV-TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv-~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|+-|.+...+.. +..-|..|=..| +.|-.|+..|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~C----------F~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSRC----------LKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETTT----------SBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEcccc----------cCcCcCCCccc
Confidence 47888888777764 445666554433 56777877774
No 273
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=35.47 E-value=53 Score=24.35 Aligned_cols=51 Identities=22% Similarity=0.481 Sum_probs=37.1
Q ss_pred CCCC-CcccCcCccccCCCceecC--Cc----CcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 4 IDVP-TFFLCPISLAIMKDPVTVP--TG----ITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 4 ~~~~-~~~~Cpic~~~~~~Pv~l~--cg----ht~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+..| +.+.|||+++.-..=|-.+ -| .-|....+.+...++ ..=|.++++++
T Consensus 21 f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~--~~HPLSREpit 78 (102)
T 2kkx_A 21 LQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG--LPHPLTREPIT 78 (102)
T ss_dssp TTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT--CCCTTTCCCCC
T ss_pred ccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC--CCCCCccCCCC
Confidence 3444 5589999999988888652 22 238899999998875 34488888876
No 274
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.34 E-value=30 Score=23.31 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=15.6
Q ss_pred ccCcCccccCCC-ceecCCcCcccHHHHHHH
Q 014913 10 FLCPISLAIMKD-PVTVPTGITYDRESIEKW 39 (416)
Q Consensus 10 ~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~ 39 (416)
|.|..|...+.+ +....-|.-||+.|..+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 556666655543 233344555666665443
No 275
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=35.22 E-value=31 Score=27.60 Aligned_cols=43 Identities=9% Similarity=-0.032 Sum_probs=30.2
Q ss_pred CcccCcCccccCCCceec--CCcCcccHHHHHHHHH---------cCCCCCCCCCC
Q 014913 8 TFFLCPISLAIMKDPVTV--PTGITYDRESIEKWLF---------AGKNNTCPMTK 52 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l--~cght~c~~ci~~~~~---------~~~~~~CP~~~ 52 (416)
.+..|.+|.+--. ++. .|-.+||..||..-+. ..+...||.|.
T Consensus 62 ~~d~C~vC~~GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 62 MDEQCRWCAEGGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CBCSCSSSCCCSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCeecccCCCCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 3467899886432 222 7889999999996542 23588999994
No 276
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.10 E-value=38 Score=22.72 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=18.1
Q ss_pred ccCcCccccCCC-ceecCCcCcccHHHHHHHH
Q 014913 10 FLCPISLAIMKD-PVTVPTGITYDRESIEKWL 40 (416)
Q Consensus 10 ~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~~ 40 (416)
|.|..|...+.. .....-|..||+.|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 666666666543 3344556666666665554
No 277
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.89 E-value=17 Score=25.07 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=16.3
Q ss_pred cccCcCccccCC--CceecCCcCcccHHHHHHH
Q 014913 9 FFLCPISLAIMK--DPVTVPTGITYDRESIEKW 39 (416)
Q Consensus 9 ~~~Cpic~~~~~--~Pv~l~cght~c~~ci~~~ 39 (416)
=|.|..|...|. +.....-|..||..|..+.
T Consensus 31 CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred cCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 356666665554 3334445555666555443
No 278
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=34.68 E-value=21 Score=25.48 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=15.8
Q ss_pred ecCCcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 24 TVPTGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 24 ~l~cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
.++|...||+.| -++|.+|
T Consensus 19 ~T~C~~CyCKkC---------c~HCq~C 37 (86)
T 1tac_A 19 KTASNRAHAKKS---------AYHSQVA 37 (86)
T ss_dssp TTCSSCSSTTTT---------TTTCCCS
T ss_pred CCCCCCceecch---------hhhhhHH
Confidence 568999999988 5778888
No 279
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.66 E-value=92 Score=29.09 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=62.9
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHh--------cCCHHHHHHHHHHHHHhhcccCchhhHhhh
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ--------RGTYESRAYAVLLLKSMLEVAEPMQLISLR 236 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 236 (416)
.+..+--++++++|+-.+..-.+.++... .....+++.+. ..+..++..++..+.|++........ .
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~--~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~ 286 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESN--QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 286 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSH--HHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---C
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcc--hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 46788889999999988776334555421 12344444441 22567899999999999854221111 0
Q ss_pred hhHHHHHHHHhc---------cCCChHHHHHHHHHHHHhCCCC
Q 014913 237 QELFVEVIQVLH---------DHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 237 ~g~i~~Lv~lL~---------~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
...+..++.++. .. +.++.--++-||.+|....
T Consensus 287 ~el~~~l~~~l~~~~g~~E~~~~-d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 287 LELLPIVADAINTKYGPLEEYQE-CEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHT-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHHHHHhcC
Confidence 123455566555 23 7788888999999987533
No 280
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.64 E-value=7.2 Score=28.49 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=34.1
Q ss_pred CCCCcccCcCccccC---CCceec--CCcCcccHHHHHHHHHcCCCCCCCCCCccccCCCCC
Q 014913 5 DVPTFFLCPISLAIM---KDPVTV--PTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECEL 61 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~---~~Pv~l--~cght~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l 61 (416)
...++..|.||+..- .+.+++ .|...|=..|+.--....+...||.|..... ...+
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~-~~~~ 81 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA-RPAL 81 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT-SCC-
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc-hhhh
Confidence 345678999999753 224444 5666677777654322234788999866554 4444
No 281
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.48 E-value=40 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=10.0
Q ss_pred cCcCccccCCCceecCCcCcc
Q 014913 11 LCPISLAIMKDPVTVPTGITY 31 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~ 31 (416)
+|+.|.+.+.+.++..-|..|
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~ 37 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKY 37 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCB
T ss_pred cCccCCCCcCceEEEECCcee
Confidence 455555555544444444444
No 282
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.33 E-value=32 Score=23.10 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=24.4
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHH---cCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLF---AGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~---~~~~~~CP~~~~~l~ 56 (416)
...|.|++|...|...-.+ .+-.. ....+.|+.|++.+.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l-----------~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNL-----------ASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHH-----------HHHHHHHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCHHHH-----------HHHHHHcCCCCCEECCCCCchhC
Confidence 3458899988877765322 22221 112578999988876
No 283
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=33.32 E-value=48 Score=25.03 Aligned_cols=36 Identities=8% Similarity=0.031 Sum_probs=28.8
Q ss_pred CCcccCcCccccCCC---ceecCCcCcccHHHHHHHHHc
Q 014913 7 PTFFLCPISLAIMKD---PVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~---Pv~l~cght~c~~ci~~~~~~ 42 (416)
++=|.|..|...+.+ +....=|..||+.|..+.+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 345899999999975 666678899999999887754
No 284
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.30 E-value=22 Score=24.12 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=19.7
Q ss_pred ccCcCccccCCC-ceecCCcCcccHHHHHHHH
Q 014913 10 FLCPISLAIMKD-PVTVPTGITYDRESIEKWL 40 (416)
Q Consensus 10 ~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~~ 40 (416)
|.|..|...+.+ +....-|.-||+.|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 677777766665 3444566777777765543
No 285
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.52 E-value=59 Score=25.88 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=52.6
Q ss_pred hHHHHHHHHhcChhhhHHHHHHHHHHhcCCCChHHHHHHHh-cChHHHHHHHHhcC----C---cHHHHHHHHHHHHHHH
Q 014913 326 LAIVSKKILRVSQVASERAVRILLSISKFSATNSVLQEMLQ-IGVVAKLCLVLQVD----N---SMKTKDKAREVLKLHA 397 (416)
Q Consensus 326 v~~Lv~~l~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~i~~-~G~v~~L~~ll~~~----~---~~~~k~~A~~ll~~l~ 397 (416)
+..|.+.|...+...+-.|+.+|-.|+.+.. +.++..+.+ ...|..|..+=..+ | ...+|++|..++..|.
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 4467777777788899999999999998765 568888776 44444443332111 1 2468999999999987
Q ss_pred HhccC
Q 014913 398 RAWKN 402 (416)
Q Consensus 398 ~~~~~ 402 (416)
..-+.
T Consensus 130 d~~~~ 134 (140)
T 1vdy_A 130 SEENG 134 (140)
T ss_dssp CCSSC
T ss_pred CcCCC
Confidence 74433
No 286
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.41 E-value=29 Score=20.50 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=9.0
Q ss_pred cccCcCccccCCCc
Q 014913 9 FFLCPISLAIMKDP 22 (416)
Q Consensus 9 ~~~Cpic~~~~~~P 22 (416)
.|.|++|...|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 10 PYSCPVCGLRFKRK 23 (45)
T ss_dssp SSEETTTTEECSCH
T ss_pred CCcCCCCCcccCCH
Confidence 46777777666543
No 287
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=32.24 E-value=1.2e+02 Score=28.96 Aligned_cols=100 Identities=13% Similarity=0.034 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHHHh--------cCCHHHHHHHHHHHHHhhcccCchhhHhhh
Q 014913 165 SSRPVDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQIMQ--------RGTYESRAYAVLLLKSMLEVAEPMQLISLR 236 (416)
Q Consensus 165 ~~~~~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~lL~--------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 236 (416)
.+..+--++++|+|+-.+..-...++.. . .....+++.+. ..+..++..++.++.|++........ .
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~-~-~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLES-N-QVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTS-H-HHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhC-c-hhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 4678888999999998777633455542 1 13455555542 12567899999999999854221111 0
Q ss_pred hhHHHHHHHHhc---------cCCChHHHHHHHHHHHHhCCCC
Q 014913 237 QELFVEVIQVLH---------DHISQQASKSALEVLVNICPWG 270 (416)
Q Consensus 237 ~g~i~~Lv~lL~---------~~~~~~~~~~A~~aL~nLs~~~ 270 (416)
...+..++.++. .. +.++.--++-||.+|....
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~-d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQE-CEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHT-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccccccccC-CHHHHHHHHHHHHHHHhcC
Confidence 123455555554 23 7788888899999987543
No 288
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=32.13 E-value=18 Score=25.34 Aligned_cols=16 Identities=38% Similarity=0.847 Sum_probs=8.6
Q ss_pred CCCCCCCCcccCcCcc
Q 014913 1 MEEIDVPTFFLCPISL 16 (416)
Q Consensus 1 ~~~~~~~~~~~Cpic~ 16 (416)
|....+-..+.||||.
T Consensus 9 ~~~~~~~~tWVCpICs 24 (76)
T 2j9u_B 9 MASADVVSTWVCPICM 24 (76)
T ss_dssp ------CEEEECTTTC
T ss_pred hcccccccceECcccc
Confidence 3344555678999998
No 289
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=31.75 E-value=17 Score=26.43 Aligned_cols=40 Identities=13% Similarity=0.272 Sum_probs=24.5
Q ss_pred CcccCcCccccCCC----ce-ecCCcCcccHHHHHHHHHcCCCCCCCCCCccc
Q 014913 8 TFFLCPISLAIMKD----PV-TVPTGITYDRESIEKWLFAGKNNTCPMTKQVL 55 (416)
Q Consensus 8 ~~~~Cpic~~~~~~----Pv-~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l 55 (416)
..+.|++|+.++.. |. -++-|..|.. -...+.||.|+..-
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fed--------lPddW~CPvCga~K 78 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFED--------IPDDWCCPDCGATK 78 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGG--------CCTTCCCSSSCCCG
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhH--------CCCCCCCCCCCCCH
Confidence 45889988866442 22 2456666542 12257899998743
No 290
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.32 E-value=25 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=10.7
Q ss_pred cCcCccccCCCceecCCcCcc
Q 014913 11 LCPISLAIMKDPVTVPTGITY 31 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cght~ 31 (416)
.|+.|.+...+.++..-|..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~ 27 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQW 27 (66)
T ss_dssp EETTTTEECCSCEECCTTSBE
T ss_pred CCcccCCEecceEEEECcccc
Confidence 455555555555444444444
No 291
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=30.26 E-value=27 Score=25.07 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=26.0
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..-.|.-|.+...+.++..-|..|=..| +.|-.|+..|.
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C----------F~C~~C~~~L~ 62 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC----------FVCADCNLNLK 62 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT----------CCCSSSCCCTT
T ss_pred cCCCcccCCCEecccEEEECCceECccC----------CEecCCCCCCC
Confidence 3457888888777766656666654433 56777777775
No 292
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=29.85 E-value=31 Score=26.52 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=28.6
Q ss_pred CCcccCcCccccCC--CceecCCcCcccHHHHHHHHHc
Q 014913 7 PTFFLCPISLAIMK--DPVTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 7 ~~~~~Cpic~~~~~--~Pv~l~cght~c~~ci~~~~~~ 42 (416)
++=|.|..|...|. +.....-|.-||..|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 34489999999883 4567778899999999888764
No 293
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.37 E-value=19 Score=24.21 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=22.9
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHc---CCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA---GKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~---~~~~~CP~~~~~l~ 56 (416)
..|.|++|...|.....+ .+-... ...+.|+.|++.+.
T Consensus 13 k~~~C~~C~k~f~~~~~L-----------~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSIL-----------VQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHH-----------HHHHHGGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHH-----------HHHHHhcCCCCCeECCCCCcccC
Confidence 457888887776655322 221211 12578999988776
No 294
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.94 E-value=3 Score=27.81 Aligned_cols=12 Identities=8% Similarity=0.296 Sum_probs=10.3
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
.+.|+.|++.+.
T Consensus 39 ~~~C~~C~k~f~ 50 (62)
T 1vd4_A 39 TFRCTFCHTEVE 50 (62)
T ss_dssp EEBCSSSCCBCE
T ss_pred CEECCCCCCccc
Confidence 578999999886
No 295
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.69 E-value=42 Score=23.90 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=23.5
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHc---CCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFA---GKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~---~~~~~CP~~~~~l~ 56 (416)
+.+.|++|...|... .-+.+-... ...+.|+.|++.+.
T Consensus 27 ~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 346788877766655 233333332 12578999988886
No 296
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.93 E-value=74 Score=18.68 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=9.7
Q ss_pred cccCcCccccCCCc
Q 014913 9 FFLCPISLAIMKDP 22 (416)
Q Consensus 9 ~~~Cpic~~~~~~P 22 (416)
.|.|++|...|..+
T Consensus 12 ~~~C~~C~k~f~~~ 25 (46)
T 2ytm_A 12 PYKCMECGKAFGDN 25 (46)
T ss_dssp SSSBTTTTBCCSSH
T ss_pred CcCCCCCCchhCCH
Confidence 46787777766655
No 297
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.93 E-value=50 Score=26.87 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=29.2
Q ss_pred cccCcCccccCCCceec----CCcCcccHHHHHHHHHcC--------CCCCCCCCC
Q 014913 9 FFLCPISLAIMKDPVTV----PTGITYDRESIEKWLFAG--------KNNTCPMTK 52 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l----~cght~c~~ci~~~~~~~--------~~~~CP~~~ 52 (416)
+..|.+|.+=- -+++ +|-..||..||.+.+..+ .+..|=.|.
T Consensus 79 ~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 79 QSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp BSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred cceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 46899988732 3322 477899999999986542 356787774
No 298
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=27.89 E-value=1.4e+02 Score=28.04 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=69.9
Q ss_pred CccHHHHHHHhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHhccCCChHHHHHHHHHHHHh--------C
Q 014913 196 TFVDSLTQIMQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVLHDHISQQASKSALEVLVNI--------C 267 (416)
Q Consensus 196 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL--------s 267 (416)
++++.++.+-...+.++|...+..|...+..+ .... .-+++.|..+|.+. ++.+.+.++.+..++ +
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~---~el~--~~~l~~L~~LL~d~-d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD---IELL--LKLIANLNMLLRDE-NVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC---GGGH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48888998888889999999999999887532 1122 35788999999887 888888776554443 2
Q ss_pred CCCcc-------hHHHHhhCcHHHHHHHhhcccchhhhHHHHHHHHHHHc
Q 014913 268 PWGRN-------RIKGVEAGAVSILIDLLLDSSLERRASEMILTVLDLLC 310 (416)
Q Consensus 268 ~~~~n-------~~~i~~~G~v~~Lv~lL~~~~~~~~~~~~a~~~L~~La 310 (416)
.++.. ...|.+ .-..++.++.++ +..++-.|+..+..+.
T Consensus 137 ~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~--n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSA--MAGDIILLLDSD--NDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHH--HHHHHHHGGGCS--SHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHH--HHHHHHHHhccC--CcchHHHHHHHHHHHH
Confidence 22221 112211 233455556565 7788888888777654
No 299
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.66 E-value=1.1e+02 Score=18.86 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=23.8
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHH-c---CCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLF-A---GKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~-~---~~~~~CP~~~~~l~ 56 (416)
...|.|++|...|... .-+.+... . ...+.|+.|++.+.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3457888887766654 23333332 1 12578999988775
No 300
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.58 E-value=34 Score=24.64 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=19.5
Q ss_pred cccCcCccccCC--CceecCCcCcccH
Q 014913 9 FFLCPISLAIMK--DPVTVPTGITYDR 33 (416)
Q Consensus 9 ~~~Cpic~~~~~--~Pv~l~cght~c~ 33 (416)
..+|..|..-.- .|+.-.||.+||.
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred CccchhhCCeecccCCeEcCCCCEecc
Confidence 368999996333 4888899999995
No 301
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.97 E-value=31 Score=25.05 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=10.2
Q ss_pred CCCCCCCCcccc
Q 014913 45 NNTCPMTKQVLS 56 (416)
Q Consensus 45 ~~~CP~~~~~l~ 56 (416)
.+.|+.|++.+.
T Consensus 62 ~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 62 MFTCHHCGKQLR 73 (96)
T ss_dssp CCCCSSSCCCCS
T ss_pred CeECCCCCCeeC
Confidence 688999988776
No 302
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.86 E-value=1.9e+02 Score=26.96 Aligned_cols=131 Identities=8% Similarity=0.019 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCChhhhhhhhccccCCccHHHHHH-HhcCCHHHHHHHHHHHHHhhcccCchhhHhhhhhHHHHHHHHh
Q 014913 169 VDEALSILCNLKISELGLKSLVMGRNGTFVDSLTQI-MQRGTYESRAYAVLLLKSMLEVAEPMQLISLRQELFVEVIQVL 247 (416)
Q Consensus 169 ~~~A~~~L~~l~~~~~~~~~~i~~~~G~~i~~Lv~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 247 (416)
+--++-+|+-+..+... . +.+..+++. +.+..+..+--+.+++.|+-........++.+......++..+
T Consensus 180 ~FP~LDLLRl~v~~~~~--------~-~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i 250 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPY--------S-SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETI 250 (362)
T ss_dssp CHHHHHHHHHHGGGCSC--------G-GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHS
T ss_pred cchHHHHHHHHhcCCCh--------H-HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHH
Confidence 44466666655544321 1 133333322 2345677888888999998666553444444322344555554
Q ss_pred cc----C---CChHHHHHHHHHHHHhCCCCc-chHHHHhhCcHHHHHHHhh-----cc--cchhhhHHHHHHHHHHHcC
Q 014913 248 HD----H---ISQQASKSALEVLVNICPWGR-NRIKGVEAGAVSILIDLLL-----DS--SLERRASEMILTVLDLLCQ 311 (416)
Q Consensus 248 ~~----~---~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~v~~Lv~lL~-----~~--~~~~~~~~~a~~~L~~La~ 311 (416)
.. . .+..++-+++..++|++.... .+. +...++.+++.+. .. ..+.++...++.+|.+|..
T Consensus 251 ~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 251 DTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 21 1 145677888889999976321 111 1234456777776 20 1277889999999999985
No 303
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=26.85 E-value=55 Score=23.61 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.6
Q ss_pred CCcccCcCccccCCC
Q 014913 7 PTFFLCPISLAIMKD 21 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~ 21 (416)
...|.|++|...|..
T Consensus 15 ~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 15 KKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CcCeECCCCCCccCC
Confidence 345899999988865
No 304
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.77 E-value=26 Score=24.66 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=20.5
Q ss_pred CcccCcCccccCC-CceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMK-DPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~-~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..-.|+-|.+.+. ..++..-|..|=.. -+.|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~----------CF~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVS----------CFKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTT----------TCBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccc----------cCCcCcCCCCcC
Confidence 3456777776654 33333444444332 245666666664
No 305
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.66 E-value=22 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.379 Sum_probs=22.0
Q ss_pred ccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 10 FLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 10 ~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
-.|+-|.+.+.+.++..-|.+|=.. -++|-.|+..|.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~----------CF~C~~C~~~L~ 52 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPD----------HFNCANCGKELT 52 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTT----------TSBCSSSCCBCC
T ss_pred CCCccCCCEecceEEEECcceeCCC----------CCEeCCCCCccC
Confidence 3577777666666555555554332 356666766665
No 306
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.55 E-value=61 Score=21.95 Aligned_cols=26 Identities=12% Similarity=-0.129 Sum_probs=19.9
Q ss_pred CcccCcCcccc-CCCceecCCcCcccH
Q 014913 8 TFFLCPISLAI-MKDPVTVPTGITYDR 33 (416)
Q Consensus 8 ~~~~Cpic~~~-~~~Pv~l~cght~c~ 33 (416)
...+|..|..- ..-++.--||.+||.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~ 40 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCG 40 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECS
T ss_pred cCCcChhhCCcccccCeEeecCCEecc
Confidence 45699999974 334677799999994
No 307
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=26.50 E-value=75 Score=22.80 Aligned_cols=34 Identities=6% Similarity=0.085 Sum_probs=25.4
Q ss_pred CCCCcccCcCccccCCCceec---CCcCcccHHHHHHH
Q 014913 5 DVPTFFLCPISLAIMKDPVTV---PTGITYDRESIEKW 39 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~~~Pv~l---~cght~c~~ci~~~ 39 (416)
.++.+-.|+||...=.+ ..+ -|+.+|=..|+++.
T Consensus 11 ~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 36678899999855433 344 47899999999996
No 308
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=26.35 E-value=4.6e+02 Score=25.49 Aligned_cols=107 Identities=17% Similarity=0.159 Sum_probs=71.9
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHhCCCCcchHHHHhhCcHHHHHHHhhcccchhh-hHHHHHHHHHHHcCChhhHH
Q 014913 239 LFVEVIQVLHDHISQQASKSALEVLVNICPWGRNRIKGVEAGAVSILIDLLLDSSLERR-ASEMILTVLDLLCQCAEGRA 317 (416)
Q Consensus 239 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~-~~~~a~~~L~~La~~~~~~~ 317 (416)
-+..|+.-|.++ .......|+..|. ...-+..+...+.+..|+.++........ +....=.++..|+.+.=.|+
T Consensus 117 sve~i~~aL~S~-~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirr 191 (500)
T 3vld_A 117 SAEDLVKALRSE-IDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRR 191 (500)
T ss_dssp CHHHHHHHHTSS-CHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CHHHHHHHHhcC-ChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHH
Confidence 457788889998 8999999999988 45567788889999999999987632333 55555556666766655677
Q ss_pred HHHhcCCchHHHHHHHHhcC-hhhhHHHHHHHHHHhc
Q 014913 318 ELLKHGAGLAIVSKKILRVS-QVASERAVRILLSISK 353 (416)
Q Consensus 318 ~i~~~~~~v~~Lv~~l~~~~-~~~~~~a~~~L~~L~~ 353 (416)
.+.+ ...+.|.+ +++.. ......-...+.-+..
T Consensus 192 ril~--nnl~lL~~-vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 192 RLFD--NNLPYLVS-VKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp HHHT--TTHHHHHH-HHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHH--HhHHHHHH-HhcCCCceeHHHHHHHHHHHhc
Confidence 7776 45666665 66533 2333334444444433
No 309
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.00 E-value=39 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=15.5
Q ss_pred ccCcCccccCCC-ceecCCcCcccHHHHHHH
Q 014913 10 FLCPISLAIMKD-PVTVPTGITYDRESIEKW 39 (416)
Q Consensus 10 ~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~ 39 (416)
|.|..|...+.+ +....-|.-||..|..+.
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQL 73 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHH
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHH
Confidence 555555555544 233344555666665443
No 310
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.85 E-value=31 Score=28.81 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=25.2
Q ss_pred CCCCCCCCccccCCCCCCCchhH-HHHHHHHHHhcc
Q 014913 45 NNTCPMTKQVLSSECELTPNHTL-RRLIQSWCTLNA 79 (416)
Q Consensus 45 ~~~CP~~~~~l~~~~~l~~n~~l-~~~i~~~~~~~~ 79 (416)
.+.||+|...+.++..+...+++ +..|..|...++
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~ 141 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG 141 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC
Confidence 47899999999844444444554 888999987753
No 311
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=25.58 E-value=55 Score=22.57 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=10.5
Q ss_pred CCcccCcC--ccccCCC
Q 014913 7 PTFFLCPI--SLAIMKD 21 (416)
Q Consensus 7 ~~~~~Cpi--c~~~~~~ 21 (416)
+..|.|++ |...|..
T Consensus 3 ~~~~~C~~~~C~~~f~~ 19 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTK 19 (89)
T ss_dssp CCCEECCSTTTCCEESS
T ss_pred CCCeeCCCCCCCCcCCC
Confidence 34578888 8877754
No 312
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.36 E-value=67 Score=22.15 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=7.8
Q ss_pred cCcCccccCCCceecCCc
Q 014913 11 LCPISLAIMKDPVTVPTG 28 (416)
Q Consensus 11 ~Cpic~~~~~~Pv~l~cg 28 (416)
.|+.|.+.+.+.++..-|
T Consensus 17 ~C~~C~~~I~~~~v~a~~ 34 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMD 34 (80)
T ss_dssp BCTTTCCBCCSSCEEETT
T ss_pred ccccCCCeecceeEEECC
Confidence 455555444443333333
No 313
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.27 E-value=24 Score=17.99 Aligned_cols=12 Identities=17% Similarity=0.589 Sum_probs=7.1
Q ss_pred ccCcCccccCCC
Q 014913 10 FLCPISLAIMKD 21 (416)
Q Consensus 10 ~~Cpic~~~~~~ 21 (416)
|.|++|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 566666665554
No 314
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.25 E-value=31 Score=24.07 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=26.5
Q ss_pred CCcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 7 PTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
+..-.|+-|.+...+.++..-|..|=..| +.|-.|++.|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C----------F~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGVFVKLRDRHRHPEC----------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCSSCEECSSCEECTTT----------TSCSSSCCCHH
T ss_pred CCCCccccCCCCccCcEEEECcceeCcCc----------CeeCCCCCCCC
Confidence 44567888888777776666666654433 56777777664
No 315
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.25 E-value=15 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=24.6
Q ss_pred CcccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
..|.|++|...|...-.+.- + ..+.|+.|++.+.
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~-~~~~C~~C~~~f~ 50 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------R-KTPMCEKCRKDSC 50 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------S-SSCCCHHHHHTCS
T ss_pred CCeeCCcccchhCCHHHhCc--------------C-CCCCCCCCChhhc
Confidence 45899999998887765533 2 2677888877776
No 316
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.71 E-value=52 Score=22.75 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=20.2
Q ss_pred cccCcCccccCCC-ceecCCcCcccHHHHHHHH
Q 014913 9 FFLCPISLAIMKD-PVTVPTGITYDRESIEKWL 40 (416)
Q Consensus 9 ~~~Cpic~~~~~~-Pv~l~cght~c~~ci~~~~ 40 (416)
=|.|..|...+.. .....-|..||+.|..+.+
T Consensus 41 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 41 CLVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp TCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred hCCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 3677777766653 3445666777777766544
No 317
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=24.66 E-value=40 Score=22.39 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCCCCCcccCcCccccCCCceec--CCcCcccHHHHHHHHHc--CCCCCCCCCCc
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTV--PTGITYDRESIEKWLFA--GKNNTCPMTKQ 53 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l--~cght~c~~ci~~~~~~--~~~~~CP~~~~ 53 (416)
..+...+..|.+|++- .-++. .|...|=..|+..-+.+ .+...||.|..
T Consensus 5 ~~~~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 5 SYETDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cccCCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3445667889999973 44444 57777878887653322 24788999954
No 318
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=24.51 E-value=17 Score=22.78 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=17.4
Q ss_pred CCCCCCcccCcCccccCCCceecCCcCcccHHH
Q 014913 3 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRES 35 (416)
Q Consensus 3 ~~~~~~~~~Cpic~~~~~~Pv~l~cght~c~~c 35 (416)
++++-+...|+-|. -|..| .+.||.+|
T Consensus 7 di~~~D~WkC~~C~-~~N~P-----l~r~C~rC 33 (46)
T 2c6a_A 7 EISLADYWKCTSCN-EMNPP-----LPSHCNRC 33 (46)
T ss_dssp SSCGGGCEECTTTC-CEECS-----SCSSCTTT
T ss_pred ccCccceEeccccc-ccCCC-----ccchhhHH
Confidence 44555778899888 44555 45666655
No 319
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.48 E-value=77 Score=22.17 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=27.3
Q ss_pred CcccCcCccccCCC---------------ceec-CCcCcccHHH-HHHHHHcC---CCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMKD---------------PVTV-PTGITYDRES-IEKWLFAG---KNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~~---------------Pv~l-~cght~c~~c-i~~~~~~~---~~~~CP~~~~~l~ 56 (416)
..|.|++|...|.. |..- .||.+|-... +.+-+... ..+.|+.|++.+.
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 45889999888865 3322 4666664432 22222211 1456888876665
No 320
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=24.39 E-value=51 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCcccCcCccccC-CCce--ecCCcCcccHHHHHHH
Q 014913 7 PTFFLCPISLAIM-KDPV--TVPTGITYDRESIEKW 39 (416)
Q Consensus 7 ~~~~~Cpic~~~~-~~Pv--~l~cght~c~~ci~~~ 39 (416)
+.+..|.+|.+-- ...+ .+.|..+||..|+..+
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~ 63 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 63 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHhh
Confidence 3467899998643 3344 4689999999998864
No 321
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=24.38 E-value=27 Score=17.50 Aligned_cols=12 Identities=8% Similarity=0.368 Sum_probs=6.3
Q ss_pred ccCcCccccCCC
Q 014913 10 FLCPISLAIMKD 21 (416)
Q Consensus 10 ~~Cpic~~~~~~ 21 (416)
|.|++|...|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 456655555444
No 322
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.22 E-value=31 Score=17.45 Aligned_cols=12 Identities=17% Similarity=0.324 Sum_probs=6.0
Q ss_pred ccCcCccccCCC
Q 014913 10 FLCPISLAIMKD 21 (416)
Q Consensus 10 ~~Cpic~~~~~~ 21 (416)
|.|+.|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 2m0e_A 3 HKCPHCDKKFNQ 14 (29)
T ss_dssp CCCSSCCCCCCT
T ss_pred CcCCCCCcccCC
Confidence 445555554443
No 323
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=24.16 E-value=43 Score=22.29 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=26.2
Q ss_pred cCcCccccCCCce---ecCCcCcccHHHHHHHHHcCCCCCCCCC
Q 014913 11 LCPISLAIMKDPV---TVPTGITYDRESIEKWLFAGKNNTCPMT 51 (416)
Q Consensus 11 ~Cpic~~~~~~Pv---~l~cght~c~~ci~~~~~~~~~~~CP~~ 51 (416)
.|=.|+..|.++. --.|++.||..| ..++-+. -..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dC-D~fiHe~-Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC-DVFVHDS-LHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHH-HHTTTTT-SCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccch-hHHHHhh-ccCCcCC
Confidence 4888888887665 237889999988 2322221 4578877
No 324
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.88 E-value=27 Score=24.05 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=14.5
Q ss_pred ccCcCccccCCC-ceecCCcCcccHHHHHH
Q 014913 10 FLCPISLAIMKD-PVTVPTGITYDRESIEK 38 (416)
Q Consensus 10 ~~Cpic~~~~~~-Pv~l~cght~c~~ci~~ 38 (416)
|.|..|...+.+ +....-|.-||+.|..+
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69 (77)
T ss_dssp CCCTTTCCCCGGGCSEEETTEEECHHHHHH
T ss_pred CeECCCCCCCCCCCeEeECCeEeCHHHHHH
Confidence 555555555543 22334455566555544
No 325
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.68 E-value=31 Score=24.95 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=24.1
Q ss_pred CcccCcCccccCC-CceecCCcCcccHHHHHHHHH-cCCCCCCCCCCcccc
Q 014913 8 TFFLCPISLAIMK-DPVTVPTGITYDRESIEKWLF-AGKNNTCPMTKQVLS 56 (416)
Q Consensus 8 ~~~~Cpic~~~~~-~Pv~l~cght~c~~ci~~~~~-~~~~~~CP~~~~~l~ 56 (416)
..|.|++|...|. ....+.- | +..... +. .+.|+.|++.+.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~~-H------~~~h~~~~~-~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLKK-H------MEVCQKLQD-ALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHHH-H------HHHHHHHHH-HHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHHHH-H------HHHHcCCCC-CEECCCCCCccC
Confidence 4588999988887 5533321 1 111111 11 578999988776
No 326
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.23 E-value=34 Score=17.46 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=7.1
Q ss_pred ccCcCccccCCCc
Q 014913 10 FLCPISLAIMKDP 22 (416)
Q Consensus 10 ~~Cpic~~~~~~P 22 (416)
|.|+.|...|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 4566666555443
No 327
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.14 E-value=51 Score=27.51 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=28.3
Q ss_pred CCcccCcCccccCCCc-eecCCcCcccHHHHHHHHHc
Q 014913 7 PTFFLCPISLAIMKDP-VTVPTGITYDRESIEKWLFA 42 (416)
Q Consensus 7 ~~~~~Cpic~~~~~~P-v~l~cght~c~~ci~~~~~~ 42 (416)
++=|.|..|...+.+- ....=|..||+.|..+.+..
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~ 68 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGP 68 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSC
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCc
Confidence 3458999999888775 45567899999999988753
No 328
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=22.90 E-value=39 Score=23.60 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=23.4
Q ss_pred cccCcCccccCCCceecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 9 FFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 9 ~~~Cpic~~~~~~Pv~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.|.|++|...|..+..+. .-+.. -.....+.|+.|++.+.
T Consensus 3 ~~~C~~C~k~f~~~~~L~-------~H~~~-H~~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLT-------THIRT-HTGEKPFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEESCHHHHH-------HHHHH-HHCCCCEECTTTCCEES
T ss_pred CCcCCCCCCccCCHHHHH-------HHHHH-cCCCCCccCCCCCCccC
Confidence 478888888776653221 01111 11122678999988876
No 329
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.63 E-value=28 Score=19.34 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=10.4
Q ss_pred CcccCcCccccCCCc
Q 014913 8 TFFLCPISLAIMKDP 22 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P 22 (416)
..|.|+.|...|..+
T Consensus 10 k~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRS 24 (37)
T ss_dssp SSBCCTTTCCCBSSH
T ss_pred CCccCCCCCcccCcH
Confidence 347888887777654
No 330
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=22.17 E-value=67 Score=21.77 Aligned_cols=45 Identities=9% Similarity=-0.073 Sum_probs=31.5
Q ss_pred CcccCcCccccCCCceec--CCcCcccHHHHHHHHHc--CCCCCCCCCCcc
Q 014913 8 TFFLCPISLAIMKDPVTV--PTGITYDRESIEKWLFA--GKNNTCPMTKQV 54 (416)
Q Consensus 8 ~~~~Cpic~~~~~~Pv~l--~cght~c~~ci~~~~~~--~~~~~CP~~~~~ 54 (416)
..-.|.+|++- +-+++ .|...|=.+|+.-.+.. .+...||.|...
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 44679999873 34444 68888888898655543 246899999654
No 331
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.12 E-value=48 Score=21.74 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=11.2
Q ss_pred CCCCcccCcCccccC
Q 014913 5 DVPTFFLCPISLAIM 19 (416)
Q Consensus 5 ~~~~~~~Cpic~~~~ 19 (416)
.+-+-+.||+|+..+
T Consensus 6 ~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 6 GLLEILACPACHAPL 20 (56)
T ss_dssp SCTTSCCCSSSCSCE
T ss_pred HHHhheeCCCCCCcc
Confidence 356778999999743
No 332
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=21.97 E-value=1.4e+02 Score=20.87 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCcccCcC--ccccCCC---------------ceec---CCcCcccHHHH-HHHHHc---CCCCCCCCCCcccc
Q 014913 7 PTFFLCPI--SLAIMKD---------------PVTV---PTGITYDRESI-EKWLFA---GKNNTCPMTKQVLS 56 (416)
Q Consensus 7 ~~~~~Cpi--c~~~~~~---------------Pv~l---~cght~c~~ci-~~~~~~---~~~~~CP~~~~~l~ 56 (416)
...|.|++ |...|.. |..- .||..|-...- .+-... ...+.|+.|++.+.
T Consensus 13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 86 (100)
T 2ebt_A 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86 (100)
T ss_dssp CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence 34588987 8888764 3333 27766654322 221211 12467888876664
No 333
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.45 E-value=78 Score=23.35 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=11.3
Q ss_pred CcccCcCccccCCCc
Q 014913 8 TFFLCPISLAIMKDP 22 (416)
Q Consensus 8 ~~~~Cpic~~~~~~P 22 (416)
..|.|++|...|...
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 6 SGVECPTCHKKFLSK 20 (124)
T ss_dssp SSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCcCCCH
Confidence 457899998888754
No 334
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.26 E-value=38 Score=17.40 Aligned_cols=13 Identities=8% Similarity=0.330 Sum_probs=7.2
Q ss_pred ccCcCccccCCCc
Q 014913 10 FLCPISLAIMKDP 22 (416)
Q Consensus 10 ~~Cpic~~~~~~P 22 (416)
|.|+.|...|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 5566666555443
No 335
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.15 E-value=48 Score=23.51 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=28.4
Q ss_pred ccCcCccccCCCc--e--ecCCcC----cccHHHHHHHHHcCCCCCCCCCCccccCCCCCCCc
Q 014913 10 FLCPISLAIMKDP--V--TVPTGI----TYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPN 64 (416)
Q Consensus 10 ~~Cpic~~~~~~P--v--~l~cgh----t~c~~ci~~~~~~~~~~~CP~~~~~l~~~~~l~~n 64 (416)
-.||||+..+.=. + +++=+. --.+.-...-+.+. .+.||.|++.+. ...+..+
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F-~FkCP~CgEEFy-G~~Lp~~ 69 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEF-VFKCPVCGEEFY-GKTLPRR 69 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHS-EEECTTTCCEEE-TTSSCTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHH-hhcCCCccHHHh-cccCChH
Confidence 4699998765311 0 111111 11233333334443 678999999987 6555443
No 336
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=20.78 E-value=71 Score=29.33 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=21.3
Q ss_pred CcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 27 TGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 27 cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
|++.|....+...+.....+.||.|+..+.
T Consensus 167 C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 196 (323)
T 1j8f_A 167 CRHEYPLSWMKEKIFSEVTPKCEDCQSLVK 196 (323)
T ss_dssp TCCEECHHHHHHHHHTTCCCBCTTTCCBEE
T ss_pred cCccccHHHHHHhhccCCCCCCcCCCCccC
Confidence 888887765544443333679999998886
No 337
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=20.38 E-value=92 Score=19.27 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=19.7
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHH
Q 014913 369 VVAKLCLVLQVDNSMKTKDKAREVLK 394 (416)
Q Consensus 369 ~v~~L~~ll~~~~~~~~k~~A~~ll~ 394 (416)
++.-|+.-|.+..+++.++....+|+
T Consensus 2 aLqqLl~tlksp~sp~qqqqvl~ILk 27 (47)
T 1zoq_C 2 ALQDLLRTLKSPSSPQQQQQVLNILK 27 (47)
T ss_dssp HHHHHHHTCCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 56677777877778888887777775
No 338
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=20.34 E-value=96 Score=21.71 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=19.7
Q ss_pred ccCcC--ccccCCCceecC-CcCcccH
Q 014913 10 FLCPI--SLAIMKDPVTVP-TGITYDR 33 (416)
Q Consensus 10 ~~Cpi--c~~~~~~Pv~l~-cght~c~ 33 (416)
-.|.. |.+.=.-|+.-. ||.+||.
T Consensus 15 ~~Cs~~~C~~~dflpf~C~~C~~~FC~ 41 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPFVCDGCSGIFCL 41 (75)
T ss_dssp CCCSCTTTCCCSCCCEECTTTCCEECS
T ss_pred CCcCcccCCCccceeeECcccCcCcCc
Confidence 58988 998877788775 9999985
No 339
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.24 E-value=62 Score=21.74 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=11.9
Q ss_pred ccCcCccccCCCc-eecCCcCcccHHHHHH
Q 014913 10 FLCPISLAIMKDP-VTVPTGITYDRESIEK 38 (416)
Q Consensus 10 ~~Cpic~~~~~~P-v~l~cght~c~~ci~~ 38 (416)
|.|..|...+.+- ....-|.-||+.|..+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhH
Confidence 4444444444332 2223344444444433
No 340
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=20.21 E-value=38 Score=35.18 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=37.0
Q ss_pred CCCcccCcCccccCCCc--------ee--cCCcCc--------------------ccHHHHHHHHHcC------CCCCCC
Q 014913 6 VPTFFLCPISLAIMKDP--------VT--VPTGIT--------------------YDRESIEKWLFAG------KNNTCP 49 (416)
Q Consensus 6 ~~~~~~Cpic~~~~~~P--------v~--l~cght--------------------~c~~ci~~~~~~~------~~~~CP 49 (416)
.|+--+|+-|..-|.|| .+ +-||-. .|..|-.+|-... +...||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 47778999999888884 44 367744 6999999985532 245699
Q ss_pred CCCcccc
Q 014913 50 MTKQVLS 56 (416)
Q Consensus 50 ~~~~~l~ 56 (416)
.|+=.+.
T Consensus 188 ~CGP~l~ 194 (761)
T 3vth_A 188 DCGPSLS 194 (761)
T ss_dssp TTSCCEE
T ss_pred ccCCeeE
Confidence 9986653
No 341
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=20.14 E-value=54 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=22.4
Q ss_pred ecCCcCcccHHHHHHHHHcCCCCCCCCCCcccc
Q 014913 24 TVPTGITYDRESIEKWLFAGKNNTCPMTKQVLS 56 (416)
Q Consensus 24 ~l~cght~c~~ci~~~~~~~~~~~CP~~~~~l~ 56 (416)
.+.||+.|...-+...+..+..+.||.|+..+.
T Consensus 124 C~~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lr 156 (246)
T 1yc5_A 124 CVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIR 156 (246)
T ss_dssp ETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEE
T ss_pred cCCCCCCCcHHHHHHHhccCCCCCCCCCCCccC
Confidence 457888887655544333322578999998886
Done!