Query 014915
Match_columns 416
No_of_seqs 242 out of 1247
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 01:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 1.1E-77 2.4E-82 677.2 35.2 387 1-413 582-1025(1204)
2 KOG1933 Cholesterol transport 100.0 2.3E-74 5.1E-79 630.8 7.0 397 1-415 559-997 (1201)
3 TIGR00918 2A060602 The Eukaryo 100.0 6.7E-63 1.5E-67 548.5 28.7 383 1-411 409-941 (1145)
4 PF02460 Patched: Patched fami 100.0 1.1E-57 2.5E-62 502.7 28.8 345 1-412 226-624 (798)
5 KOG1934 Predicted membrane pro 100.0 4.8E-54 1E-58 466.9 27.5 328 15-411 274-655 (868)
6 KOG1935 Membrane protein Patch 100.0 3.6E-37 7.8E-42 321.0 15.9 383 1-411 422-894 (1143)
7 TIGR00920 2A060605 3-hydroxy-3 100.0 8.9E-31 1.9E-35 279.1 14.0 144 1-151 72-216 (886)
8 PF12349 Sterol-sensing: Stero 100.0 1.7E-29 3.6E-34 225.5 16.1 134 19-152 1-134 (153)
9 COG1033 Predicted exporters of 99.9 2.6E-25 5.7E-30 238.2 22.7 208 23-231 219-450 (727)
10 TIGR00921 2A067 The (Largely A 99.9 3.5E-23 7.6E-28 226.4 25.2 206 24-230 217-450 (719)
11 TIGR00833 actII Transport prot 99.9 2E-20 4.3E-25 209.3 24.0 204 25-230 198-430 (910)
12 TIGR03480 HpnN hopanoid biosyn 99.7 6.7E-17 1.4E-21 180.5 21.5 188 26-216 295-500 (862)
13 PF03176 MMPL: MMPL family; I 99.7 1E-15 2.3E-20 152.8 14.5 134 23-156 166-304 (333)
14 COG1033 Predicted exporters of 99.6 2.1E-15 4.5E-20 162.4 14.5 131 23-154 591-721 (727)
15 TIGR00921 2A067 The (Largely A 99.6 1.3E-14 2.8E-19 159.1 16.3 127 24-151 591-717 (719)
16 TIGR03480 HpnN hopanoid biosyn 99.4 9.7E-13 2.1E-17 147.2 13.8 122 23-151 735-856 (862)
17 COG2409 Predicted drug exporte 99.3 2.5E-11 5.4E-16 136.5 18.4 206 22-229 206-440 (937)
18 TIGR00916 2A0604s01 protein-ex 99.3 9.9E-12 2.1E-16 115.1 11.2 118 25-143 71-191 (192)
19 TIGR00833 actII Transport prot 99.3 3.2E-11 6.9E-16 135.6 14.7 129 24-153 768-902 (910)
20 PRK13022 secF preprotein trans 99.2 3.9E-11 8.4E-16 117.9 10.8 129 24-153 150-281 (289)
21 TIGR00918 2A060602 The Eukaryo 99.2 1.3E-10 2.9E-15 131.3 16.1 131 23-156 988-1119(1145)
22 PRK13024 bifunctional preprote 99.2 1.7E-10 3.6E-15 126.8 14.9 126 26-152 290-416 (755)
23 PRK10614 multidrug efflux syst 99.2 3E-10 6.4E-15 129.3 15.2 182 27-209 359-580 (1025)
24 PRK09579 multidrug efflux prot 99.1 3E-09 6.5E-14 121.0 17.0 125 27-152 358-486 (1017)
25 PRK13023 bifunctional preprote 99.1 1.9E-09 4.2E-14 117.4 14.4 126 26-152 302-428 (758)
26 PRK14726 bifunctional preprote 99.0 7.4E-09 1.6E-13 114.2 15.4 126 26-152 396-522 (855)
27 PRK10555 aminoglycoside/multid 99.0 1E-08 2.2E-13 116.9 16.9 125 27-152 365-494 (1037)
28 TIGR00915 2A0602 The (Largely 99.0 9.6E-09 2.1E-13 117.2 16.6 185 27-212 365-598 (1044)
29 TIGR01129 secD protein-export 99.0 2.2E-09 4.7E-14 109.9 10.1 124 26-150 272-396 (397)
30 PF02460 Patched: Patched fami 99.0 6.8E-09 1.5E-13 115.5 14.3 128 23-152 668-795 (798)
31 PRK05812 secD preprotein trans 99.0 2.7E-09 5.9E-14 111.8 10.3 127 26-153 357-484 (498)
32 PRK10503 multidrug efflux syst 98.9 9.4E-09 2E-13 117.2 15.3 185 27-212 368-596 (1040)
33 PF00873 ACR_tran: AcrB/AcrD/A 98.9 2.1E-08 4.6E-13 114.5 17.4 160 27-187 358-550 (1021)
34 TIGR00966 3a0501s07 protein-ex 98.9 8.3E-09 1.8E-13 99.3 11.3 121 24-145 121-244 (246)
35 PRK15127 multidrug efflux syst 98.9 1.9E-08 4.2E-13 114.8 15.8 125 27-152 365-494 (1049)
36 PRK09577 multidrug efflux prot 98.9 1.4E-08 3E-13 115.8 14.5 125 27-152 364-493 (1032)
37 PRK08578 preprotein translocas 98.8 2.3E-08 5.1E-13 98.4 11.3 122 24-152 158-283 (292)
38 PF02355 SecD_SecF: Protein ex 98.8 1.9E-07 4.2E-12 86.3 15.5 127 25-152 55-184 (189)
39 PRK12911 bifunctional preprote 98.8 7.2E-08 1.6E-12 108.2 14.7 125 27-152 934-1059(1403)
40 TIGR00914 2A0601 heavy metal e 98.8 5.6E-08 1.2E-12 111.2 14.3 160 27-189 368-562 (1051)
41 PRK13024 bifunctional preprote 98.7 8.8E-08 1.9E-12 105.5 11.3 128 23-151 599-729 (755)
42 PRK12933 secD preprotein trans 98.6 2.3E-07 5E-12 98.4 11.9 127 26-153 464-592 (604)
43 PRK13021 secF preprotein trans 98.6 2.3E-07 5E-12 91.3 11.0 127 24-151 149-278 (297)
44 COG0841 AcrB Cation/multidrug 98.6 1.7E-07 3.7E-12 105.8 11.2 181 28-211 357-580 (1009)
45 TIGR00917 2A060601 Niemann-Pic 98.5 1.3E-06 2.9E-11 100.6 16.2 126 25-152 1074-1201(1204)
46 PRK14726 bifunctional preprote 98.5 4.2E-07 9.1E-12 100.6 11.5 129 23-152 694-825 (855)
47 TIGR00914 2A0601 heavy metal e 98.5 6.5E-07 1.4E-11 102.6 11.3 125 27-152 905-1033(1051)
48 COG4258 Predicted exporter [Ge 98.4 1.3E-06 2.9E-11 90.9 10.1 108 27-146 672-779 (788)
49 PRK15127 multidrug efflux syst 98.3 3.4E-06 7.5E-11 96.5 10.7 126 27-153 898-1028(1049)
50 KOG3664 Predicted patched tran 98.3 2.8E-07 6E-12 101.1 1.2 130 22-151 347-496 (999)
51 PRK08343 secD preprotein trans 98.2 1.2E-05 2.7E-10 82.8 12.1 115 35-151 296-410 (417)
52 TIGR00915 2A0602 The (Largely 98.2 1.3E-05 2.8E-10 91.9 12.7 126 27-153 897-1026(1044)
53 KOG1934 Predicted membrane pro 98.1 1E-05 2.2E-10 89.9 10.4 116 41-157 718-833 (868)
54 COG0341 SecF Preprotein transl 98.1 2E-05 4.3E-10 77.8 10.5 133 20-153 153-288 (305)
55 PRK10555 aminoglycoside/multid 98.1 2.2E-05 4.8E-10 89.9 12.3 126 27-153 896-1025(1037)
56 PRK10503 multidrug efflux syst 98.1 1.7E-05 3.6E-10 90.9 11.2 126 27-153 891-1021(1040)
57 COG4258 Predicted exporter [Ge 98.0 8.3E-05 1.8E-09 77.9 14.1 177 28-212 284-477 (788)
58 PRK09579 multidrug efflux prot 98.0 1.7E-05 3.7E-10 90.7 9.2 125 27-152 871-1000(1017)
59 PF00873 ACR_tran: AcrB/AcrD/A 98.0 0.0001 2.2E-09 84.5 14.4 121 30-151 892-1017(1021)
60 PRK13023 bifunctional preprote 97.9 5.3E-05 1.1E-09 83.2 11.1 128 23-151 600-730 (758)
61 PRK09577 multidrug efflux prot 97.9 5.9E-05 1.3E-09 86.4 11.6 127 27-154 892-1022(1032)
62 COG0342 SecD Preprotein transl 97.9 8.3E-05 1.8E-09 78.4 11.3 129 25-154 366-495 (506)
63 PRK12911 bifunctional preprote 97.8 0.00013 2.7E-09 82.8 10.8 128 23-151 1256-1391(1403)
64 PRK10614 multidrug efflux syst 97.7 0.00019 4.1E-09 82.3 11.9 126 27-153 877-1007(1025)
65 COG3696 Putative silver efflux 97.5 0.00056 1.2E-08 75.1 9.9 159 27-186 361-548 (1027)
66 COG2409 Predicted drug exporte 97.2 0.0037 8E-08 71.1 12.6 128 23-151 780-912 (937)
67 KOG1935 Membrane protein Patch 97.0 0.006 1.3E-07 66.4 12.0 132 23-157 941-1073(1143)
68 COG0841 AcrB Cation/multidrug 95.1 0.022 4.8E-07 65.1 4.8 123 28-151 877-1003(1009)
69 COG3696 Putative silver efflux 90.4 0.96 2.1E-05 50.6 8.1 126 27-154 888-1018(1027)
70 KOG1933 Cholesterol transport 68.8 0.58 1.3E-05 54.0 -3.5 118 34-154 1054-1174(1201)
71 PF09946 DUF2178: Predicted me 61.3 99 0.0021 26.0 10.8 20 120-139 88-107 (111)
72 PF14402 7TM_transglut: 7 tran 60.4 41 0.00088 33.5 7.9 69 28-108 194-263 (313)
73 smart00040 CSF2 Granulocyte-ma 56.8 10 0.00022 31.6 2.7 18 336-353 102-119 (121)
74 cd00040 CSF2 Granulocyte Macro 56.4 10 0.00022 31.8 2.6 18 336-353 102-119 (121)
75 KOG0055 Multidrug/pheromone ex 54.7 1.5E+02 0.0031 35.2 12.2 66 216-281 1000-1071(1228)
76 KOG3659 Sodium-neurotransmitte 53.8 20 0.00043 38.8 4.9 42 6-50 343-384 (629)
77 TIGR02230 ATPase_gene1 F0F1-AT 53.6 42 0.0009 27.9 5.8 52 26-77 42-97 (100)
78 PF04123 DUF373: Domain of unk 32.9 2.9E+02 0.0062 28.1 9.2 23 21-43 158-180 (344)
79 PF04156 IncA: IncA protein; 31.7 79 0.0017 28.7 4.7 28 41-68 22-49 (191)
80 PF11241 DUF3043: Protein of u 30.3 1.1E+02 0.0024 27.9 5.2 63 15-81 66-128 (170)
81 COG3301 NrfD Formate-dependent 29.8 4.8E+02 0.01 25.9 9.8 105 20-129 125-237 (305)
82 COG4987 CydC ABC-type transpor 29.5 7.6E+02 0.017 26.8 12.0 36 18-54 10-45 (573)
83 PF10942 DUF2619: Protein of u 28.6 84 0.0018 24.2 3.5 45 89-136 24-68 (69)
84 PF01988 VIT1: VIT family; In 27.8 5E+02 0.011 24.1 11.1 25 101-125 129-153 (213)
85 PRK11715 inner membrane protei 25.5 6.4E+02 0.014 26.5 10.5 89 98-186 303-407 (436)
86 PF06123 CreD: Inner membrane 24.8 6.8E+02 0.015 26.3 10.6 92 95-186 294-401 (430)
87 COG1279 Lysine efflux permease 24.1 2.8E+02 0.0061 26.0 6.8 61 63-138 15-81 (202)
88 PF01109 GM_CSF: Granulocyte-m 23.8 27 0.00059 29.6 0.1 18 336-353 102-119 (122)
89 PF11023 DUF2614: Protein of u 23.3 96 0.0021 26.2 3.2 34 21-54 33-66 (114)
90 PF06741 LsmAD: LsmAD domain; 22.4 74 0.0016 24.7 2.3 28 386-413 12-40 (72)
91 COG1133 SbmA ABC-type long-cha 21.9 5.6E+02 0.012 25.8 8.6 37 156-192 233-270 (405)
92 PF12650 DUF3784: Domain of un 20.5 4.5E+02 0.0097 21.0 7.1 54 62-115 7-62 (97)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=1.1e-77 Score=677.22 Aligned_cols=387 Identities=57% Similarity=0.961 Sum_probs=353.0
Q ss_pred CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (416)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~ 80 (416)
||+|++++||+...+++++++||++||++|++++++|+++++|+++++|+++++++++++|||+|||||||+|+++++|+
T Consensus 582 m~~y~~l~l~~~~~~~~~~v~Sk~~l~l~gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~ 661 (1204)
T TIGR00917 582 MFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQ 661 (1204)
T ss_pred HHHHHHHHHccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78999999999877777899999999999999999999999999999999999878999999999999999999999998
Q ss_pred hccC--CC---------CHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 81 RQPM--EL---------VLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVA 149 (416)
Q Consensus 81 ~~~~--~~---------~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~a 149 (416)
+..+ +. ++++|++++++++||||++|++|+++||++|+++++|++|.||+++++||+++|++|+|+|||
T Consensus 662 r~~~~~~~~~~~~~~~~~~~~ri~~~l~~~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~a 741 (1204)
T TIGR00917 662 RLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVA 741 (1204)
T ss_pred HhhhccccccccccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7542 12 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--------------------------------------------HhhccccccccchhhhHHHHHHHHHHHHHHhhhc
Q 014915 150 LI--------------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRI 185 (416)
Q Consensus 150 lL--------------------------------------------~~~~p~l~~~~~k~~v~~~f~~~~~~si~g~~~i 185 (416)
+| ++|+|+|+++++|++|+++|++++++|+||+++|
T Consensus 742 lL~ld~rR~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i 821 (1204)
T TIGR00917 742 LLVLDFKRTEDNRVDCFPCIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRI 821 (1204)
T ss_pred HHHHHHHHHHcCCccEEEeecccccccccccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhc
Confidence 99 1368999999999999999999999999999999
Q ss_pred cccccccccCCCCchhhhhHHHHhhhcCCCCcEEEEEe-cCCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCccc
Q 014915 186 EAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVK-DYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYI 264 (416)
Q Consensus 186 ~~gld~~~~lp~dS~~~~~~~~~~~~f~~g~pv~~vv~-~~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s~~ 264 (416)
++|+||++++|+|||+.+|++.+++||+.|+|||+|++ ++||+++ +.|+++|++.+|+.+|+.++. ++.+|+
T Consensus 822 ~~gLd~~~~~p~dSyl~~yf~~~~~~~~~gppvy~Vv~~~~dy~~~-~~q~~lc~~~~c~~~sl~~~~------~~~~~i 894 (1204)
T TIGR00917 822 DIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDS-ESQNKVCTGGGCNKDSIVNVF------NNLTYI 894 (1204)
T ss_pred CCCcCHhhhCCCCCcHHHHHHHHHHhhccCCcEEEEEcCCCCCCCH-HHHHHHhcccCCcHHHHHHhh------cccchh
Confidence 99999999999999999999999999999999999999 5999997 578999999999999999854 456788
Q ss_pred cCCCCchHHHHHhhcCCCCCccceec-cCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCChhhHHhh
Q 014915 265 AKPAASWLDDFLVWTSPEAFGCCRKF-VNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREK 343 (416)
Q Consensus 265 ~~~~~~Wl~df~~~~~~~~~~ccr~~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~ 343 (416)
.+|+++|||||++|+++. ++|||.+ .++++||+++ ++|.+|.+-.....++|++++|++|
T Consensus 895 ~~~~~sWlddf~~wl~~~-~~cc~~~~~~~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~ 955 (1204)
T TIGR00917 895 AKPASSWLDDYFDWASPQ-SSCCCRKFTNGTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEY 955 (1204)
T ss_pred cCCchHHHHHHHHHhCcc-ccceeecCCCCCcCCCcc------------------ccccccccccccccCCCCHHHHHHH
Confidence 899999999999999986 5899975 4677887322 3466665422234679999999999
Q ss_pred hhHhhhcCCCcccccCCCCCCccceeecCCCCceEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhh
Q 014915 344 LPWFLNALPSADCAKGGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDT 413 (416)
Q Consensus 344 L~~FL~~~P~~~c~~gG~~~y~~~v~~~~~~~~~I~as~F~~~h~~l~~s~d~i~al~~~r~ia~~i~~~ 413 (416)
|++||+++|+.+|++||+++|+.++++++++++.|.|||||+||+++++++|+++||+++|+||+++++.
T Consensus 956 l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~ 1025 (1204)
T TIGR00917 956 LPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRS 1025 (1204)
T ss_pred HHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999997655667999999999999999999999999999999999864
No 2
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-74 Score=630.78 Aligned_cols=397 Identities=53% Similarity=0.898 Sum_probs=374.0
Q ss_pred CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (416)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~ 80 (416)
||+|++++||+++++++..++||+.+|+.|++++++++.+++|+.+++|++.+.++.+++|||++++|+|++|+++++|+
T Consensus 559 mf~yi~~~Lg~~~~~r~vlidSkv~lgi~Gv~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~q 638 (1201)
T KOG1933|consen 559 MFLYINLALGHYRSCRRVLIDSKVLLGISGVLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQ 638 (1201)
T ss_pred HHHHHHHHhccCcccceeeeeceeeccccceEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC--CCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 014915 81 RQPME--LVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI------- 151 (416)
Q Consensus 81 ~~~~~--~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL------- 151 (416)
|..+. .+.++||..++.++||+|+.+++.+..+|++|++++||+|+.|++++++++++++++|+|.|++++
T Consensus 639 r~~~~~~~~~~~~I~~~l~~~~Psil~~slse~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~ 718 (1201)
T KOG1933|consen 639 RDGRSKSEPLEQRIGSVLGEVGPSILLSSLSENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRR 718 (1201)
T ss_pred ccccccCCCcccccchhhhccCcHHHHhHHHhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhh
Confidence 88654 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------HhhccccccccchhhhHHHHHHHHHHHHHHhhhccccccccccCCCCch
Q 014915 152 -------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSY 200 (416)
Q Consensus 152 -------------------------------~~~~p~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~ 200 (416)
+.|+|++++|.+|+.++++|.+++.+++++..+|+.|+||+..+|+|||
T Consensus 719 ~~~r~d~~~~~~~~~~~~~~~~~~~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Sy 798 (1201)
T KOG1933|consen 719 LDNRIDIFCCVKPSEEESVRGNEGLLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSY 798 (1201)
T ss_pred hcCCcceEecccccccccccccchhHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccch
Confidence 1368999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHhhhcCCCCcEEEEEec-CCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCccccCCCCchHHHHHhhc
Q 014915 201 LQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWT 279 (416)
Q Consensus 201 ~~~~~~~~~~~f~~g~pv~~vv~~-~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s~~~~~~~~Wl~df~~~~ 279 (416)
+.+||+.++++++.|||||+|+++ +||+++ ++||++|++.+|+++|+.|++..+++.+|.+|+++|..+|+|||++|+
T Consensus 799 l~dyF~~~~e~l~~GPPvyfv~k~~~~~s~~-~~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~ 877 (1201)
T KOG1933|consen 799 LSDYFKNLNEFLNVGPPVYFVLKGGLDLSSP-KDQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWL 877 (1201)
T ss_pred hhhHhhhhhhhcccCCCEEEEecCCCCCCCh-hcccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheee
Confidence 999999999999999999999996 899988 689999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccee-ccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCChhhHHhhhhHhhhcCCCccccc
Q 014915 280 SPEAFGCCRK-FVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFLNALPSADCAK 358 (416)
Q Consensus 280 ~~~~~~ccr~-~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~~FL~~~P~~~c~~ 358 (416)
++.+ +|||+ ..++.|||++.++ ..|.+|..+.+....||+.++|+++||+||++.|+.+|+|
T Consensus 878 ~~~~-~cCr~~~~~g~fc~~~~~~----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~ 940 (1201)
T KOG1933|consen 878 SPQS-SCCRLKPDPGQFCPPSLND----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAK 940 (1201)
T ss_pred cccC-CccccCCCCCCcCCCCccc----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCC
Confidence 9974 59995 4568999997665 3566676555555569999999999999999999999999
Q ss_pred CCCCCCccceeecCCCCceEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhhhhC
Q 014915 359 GGHGAYSTSVDLNGYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSDTLK 415 (416)
Q Consensus 359 gG~~~y~~~v~~~~~~~~~I~as~F~~~h~~l~~s~d~i~al~~~r~ia~~i~~~~~ 415 (416)
||||+|+.+|++..++.+.|+||+||+|||+++|+.||++|||.+|+++.+|+++++
T Consensus 941 gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~ 997 (1201)
T KOG1933|consen 941 GGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLK 997 (1201)
T ss_pred CCceeeecceEEEecCcccchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhccc
Confidence 999999999999865555699999999999999999999999999999999998764
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=6.7e-63 Score=548.51 Aligned_cols=383 Identities=25% Similarity=0.370 Sum_probs=306.3
Q ss_pred CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (416)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~ 80 (416)
||+|++++++++ ++++||++||++|++++++|+++++|+++++|+++|.++++++|||+|||||||+|+|+|+|+
T Consensus 409 m~~Ya~~~l~~~-----d~v~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~ 483 (1145)
T TIGR00918 409 MLAYACLTMLRW-----DCAKSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFS 483 (1145)
T ss_pred HHHHHHHHhccc-----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHh
Confidence 789999999986 589999999999999999999999999999999999977899999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 014915 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE-------- 152 (416)
Q Consensus 81 ~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~-------- 152 (416)
+++++.++++|++++++++|+||++|++|++++|++|+++++|++|.||+|++++++++|++|+|+|||+|.
T Consensus 484 ~t~~~~~v~~r~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~ 563 (1145)
T TIGR00918 484 ETGQNIPFEERTGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRRED 563 (1145)
T ss_pred hcCccCCHHHHHHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 998889999999999999999999999999999999999999999999999999999999999999999991
Q ss_pred --------------------------------------------------------------------------------
Q 014915 153 -------------------------------------------------------------------------------- 152 (416)
Q Consensus 153 -------------------------------------------------------------------------------- 152 (416)
T Consensus 564 ~R~D~~cC~~~p~~~~~~~~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1145)
T TIGR00918 564 RRLDIFCCFFSPCSARVIQIEPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDI 643 (1145)
T ss_pred CCcceeeeecccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred ----------------------------------hhccccccccchhhhHHHHHHHHHHHHHHhhhccccccccccCCCC
Q 014915 153 ----------------------------------VHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRD 198 (416)
Q Consensus 153 ----------------------------------~~~p~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~d 198 (416)
+|+|+|+++++|++|+++|++++++|+||+++++.|+|+++++|+|
T Consensus 644 ~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~D 723 (1145)
T TIGR00918 644 AGSTRDLLSQFEDSKAACLSLPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRD 723 (1145)
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCC
Confidence 0345677788899999999999999999999999999999999999
Q ss_pred chhhhhHHHHhhhcCCCCcEEEEEec-CCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCccccCC-----CCchH
Q 014915 199 SYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKP-----AASWL 272 (416)
Q Consensus 199 S~~~~~~~~~~~~f~~g~pv~~vv~~-~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s~~~~~-----~~~Wl 272 (416)
||+.+|++.+++||+. +|+|+|+++ +||.+. |+++ ++..+++++.+|+.++ +.+||
T Consensus 724 Syl~~yf~~~~~yF~~-~~vy~V~~~~~dy~~~---q~~l--------------~~l~~~f~~~~~i~~~~~~~~~~~WL 785 (1145)
T TIGR00918 724 TNEHDFLDAQFRYFSF-YNMYAVTQGNFDYPTQ---QQLL--------------YDLHQSFSSVKYVLKEDNGQLPRMWL 785 (1145)
T ss_pred CcHHHHHHHHHHhcCc-CceEEEeCCCCCchHH---HHHH--------------HHHHHHhccCceeecCCCCCccchHH
Confidence 9999999999999988 789999994 999542 3322 2233666777887765 46999
Q ss_pred HHHHhhcCCC-C--Cccceec--cCCccCCCCCCCCCCCCC-C-CCCCCCCCCCCCCcccccCCCCCCCCChhhHHhhhh
Q 014915 273 DDFLVWTSPE-A--FGCCRKF--VNGTYCPPDDQPPCCSPD-E-EPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLP 345 (416)
Q Consensus 273 ~df~~~~~~~-~--~~ccr~~--~~~~~c~~~~~~~~~~~~-~-~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~ 345 (416)
|||++|+++. . ++|||.. .++.||+++.....|..- . +....++.+..|.+-. +....+++|++++|++||+
T Consensus 786 ddf~~wL~~lq~~~d~~~~~g~~~~~~~~n~s~~~~~~~~l~~qtg~~~~p~~~~~~~~~-r~v~~~g~~~~~~F~~yL~ 864 (1145)
T TIGR00918 786 HYFRDWLQGLQKAFDEDWRDGRITKENYRNGSDDAVLAYKLLVQTGHRDKPVDKEQLTTQ-RLVNADGIINPNAFYIYLS 864 (1145)
T ss_pred HHHHHHHHHhhhhhhhhhhhcccccccccCCccccchhhhhcccccccCCcccccccccc-ccccccCCCCHHHHHHHHH
Confidence 9999999972 2 5799852 346688765432211110 0 0000111122221110 1123567999999999999
Q ss_pred HhhhcCCCcccccCCC--------CCCccc-eeecCCCCceEE------eeEEEEecccCCChhHHHHHHHHHHHHHHHh
Q 014915 346 WFLNALPSADCAKGGH--------GAYSTS-VDLNGYESGIIQ------ASEFRTFHTPLNKQGDYVNSLRAAREFSSRM 410 (416)
Q Consensus 346 ~FL~~~P~~~c~~gG~--------~~y~~~-v~~~~~~~~~I~------as~F~~~h~~l~~s~d~i~al~~~r~ia~~i 410 (416)
.|+++.|.. +++. ..|..+ .+++. ++..|. .++||+||+++++++|+++|++++|+|++++
T Consensus 865 ~wl~~~~~~---y~~sq~~~~p~~~~~~~~~~~~~~-~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~ 940 (1145)
T TIGR00918 865 AWVSNDPVA---YAASQANIYPHPPEWLHDKNDYDP-ENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNY 940 (1145)
T ss_pred HHHcCCcch---hhcccccccCCcchhccccccccc-ccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhh
Confidence 999876651 1111 001111 12211 112344 4599999999999999999999999999998
Q ss_pred h
Q 014915 411 S 411 (416)
Q Consensus 411 ~ 411 (416)
+
T Consensus 941 ~ 941 (1145)
T TIGR00918 941 E 941 (1145)
T ss_pred h
Confidence 6
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=1.1e-57 Score=502.71 Aligned_cols=345 Identities=37% Similarity=0.616 Sum_probs=298.1
Q ss_pred CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (416)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~ 80 (416)
|++|+.+++++.+....+|++||+|+|++|++++++|+++++|++.++|+++++ ++.++|||+|||||||+|+++++|+
T Consensus 226 ~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIGvDd~Fi~~~~~~ 304 (798)
T PF02460_consen 226 MFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIGVDDMFIMIHAWR 304 (798)
T ss_pred HHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHHHhceEEeHHHHh
Confidence 567888888877655678999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 014915 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI--------- 151 (416)
Q Consensus 81 ~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL--------- 151 (416)
+++...+++||++++++++||||++||+|++++|++|++|++|+||.||+|++++|+++|++|+|+|+|+|
T Consensus 305 ~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~a~l~l~~~re~~ 384 (798)
T PF02460_consen 305 RTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFPAILVLDGRREAA 384 (798)
T ss_pred hhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------HhhccccccccchhhhHHHHHHHHHHHHHHhhhcccccc
Q 014915 152 -----------------------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLE 190 (416)
Q Consensus 152 -----------------------------------------~~~~p~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld 190 (416)
++|+|++.++++|++|+++|++++++|+||+.+++.|+|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld 464 (798)
T PF02460_consen 385 GRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLD 464 (798)
T ss_pred cccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 135778999999999999999999999999999999999
Q ss_pred ccccCCCCchhhhhHHHHhhhc-CCCCcEEEEEec-CCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCccccCCC
Q 014915 191 QQIVLPRDSYLQGYFDNTTEYL-RVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPA 268 (416)
Q Consensus 191 ~~~~lp~dS~~~~~~~~~~~~f-~~g~pv~~vv~~-~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s~~~~~~ 268 (416)
+++++|+|||+.+|++.+++|| +.|+|+++++++ +||+++ +.|+++ +++.+++ ++.+ ++.+.+++
T Consensus 465 ~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~-~~~~~l--------~~lv~~f---e~~~-~~~~~~~t 531 (798)
T PF02460_consen 465 PEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDP-ENQDRL--------NSLVQEF---ENSP-YSIGNNST 531 (798)
T ss_pred hhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccch-HHHHHH--------HHHHHHH---hccc-cccccccc
Confidence 9999999999999999998887 789999999996 899997 355543 2344443 3333 34455667
Q ss_pred CchHHHHHhhcCCCCCccceeccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCChhhHHhhhhHhh
Q 014915 269 ASWLDDFLVWTSPEAFGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLPWFL 348 (416)
Q Consensus 269 ~~Wl~df~~~~~~~~~~ccr~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~~FL 348 (416)
.+||+||.+|+++.. ... . +. .+++.|++.+++||
T Consensus 532 ~~WL~~y~~~l~~~~---------~~~--------------------------------~--~~--~~~~~~~~~l~~FL 566 (798)
T PF02460_consen 532 SFWLRDYLNFLNSIN---------SSF--------------------------------Q--DD--NDKEFFYNLLPEFL 566 (798)
T ss_pred hhhHHHHHHHHhhcc---------ccc--------------------------------c--cc--ccceeeeccchhhh
Confidence 899999999996521 100 0 00 01245899999999
Q ss_pred hcCCCcccccCCCCCCccceeec--CCCCceEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhhh
Q 014915 349 NALPSADCAKGGHGAYSTSVDLN--GYESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMSD 412 (416)
Q Consensus 349 ~~~P~~~c~~gG~~~y~~~v~~~--~~~~~~I~as~F~~~h~~l~~s~d~i~al~~~r~ia~~i~~ 412 (416)
..++ ...|..++.++ +++.+.|.++||+++++++.+.+|.+++|+++|+|+++.++
T Consensus 567 ~~~~--------~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~ 624 (798)
T PF02460_consen 567 NSPE--------YRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSD 624 (798)
T ss_pred cccc--------ccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhccee
Confidence 7532 24588899986 24567899999999999999999999999999999997653
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=4.8e-54 Score=466.90 Aligned_cols=328 Identities=28% Similarity=0.461 Sum_probs=289.1
Q ss_pred cceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHH
Q 014915 15 FSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISN 94 (416)
Q Consensus 15 ~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~ 94 (416)
.+.+|++||+|||++|++++++|.++++|++.|+|++++. ++.++|||++||||||+|+|+++|+|++++++.++||++
T Consensus 274 ~~~~~v~SKp~lai~g~l~p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~ 352 (868)
T KOG1934|consen 274 FMIDWVRSKPILAILGVLSPVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAE 352 (868)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHH
Confidence 3568999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
Q 014915 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI----------------------- 151 (416)
Q Consensus 95 ~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL----------------------- 151 (416)
+++++||||++||+|++++|++|++|++|+||.||+|+++|++++|++|+|||.|+|
T Consensus 353 ~laeag~SItITSlTn~lsFgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~ 432 (868)
T KOG1934|consen 353 TLAEAGPSITITSLTNVLSFGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLE 432 (868)
T ss_pred HHHHhcCeeeHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------HhhccccccccchhhhHHHHHHHHHHHHHHhhhccccccccccCCCCchhhhhH
Q 014915 152 --------------------------EVHAPILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYF 205 (416)
Q Consensus 152 --------------------------~~~~p~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~ 205 (416)
+.|+|++.++++|+++++++++|+++++||+.+++.|+|+.+++|+|||+.+++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~ 512 (868)
T KOG1934|consen 433 KTEEQKSSSSSSSSSLHNPILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSL 512 (868)
T ss_pred ccccccccCcccccccccchHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHH
Confidence 136789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhc-CCCCcEEEEEec-CCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCccccCCCCchHHHHHhhcCCCC
Q 014915 206 DNTTEYL-RVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELSYIAKPAASWLDDFLVWTSPEA 283 (416)
Q Consensus 206 ~~~~~~f-~~g~pv~~vv~~-~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s~~~~~~~~Wl~df~~~~~~~~ 283 (416)
+..++++ ++|.++.++|++ +|++++++.+ .+.+.+++.+..+ .+.+.+.+.+||+||.+|....
T Consensus 513 ~~~~~~~~~~~~~v~v~V~np~dl~~~~~~~------------~~~~~~~~fE~~~-~~~G~~sT~~wlr~y~~~~~~~- 578 (868)
T KOG1934|consen 513 RLQEKYFWEYGQQVAVFVNNPPDLSNPENRD------------NLNELVSEFESTP-YSMGRESTKFWLREYLNFLFEK- 578 (868)
T ss_pred HHHHHHhhccCceEEEEEcCCccCCCHHHHH------------HHHHHHHHHhcCC-cccCcccchhHHHHHHHHHhhh-
Confidence 9999988 668999999996 8999874322 3455555555554 4567777889999999996432
Q ss_pred CccceeccCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCChhhHHhhhh-HhhhcCCCcccccCCCC
Q 014915 284 FGCCRKFVNGTYCPPDDQPPCCSPDEEPCGVNGVCKDCTTCFRHSDLVNNRPSTEQFREKLP-WFLNALPSADCAKGGHG 362 (416)
Q Consensus 284 ~~ccr~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~-~FL~~~P~~~c~~gG~~ 362 (416)
+. ....++++|+..+. +|+.. ++..
T Consensus 579 --------~~--------------------------------------~~~~~~~~~~~~~~~~fl~~--------~~~~ 604 (868)
T KOG1934|consen 579 --------NA--------------------------------------ELEDNDDEFYDHLYESFLKS--------PEFS 604 (868)
T ss_pred --------cc--------------------------------------cccCCCcchhhhhHHHHhcc--------cccc
Confidence 10 00113466888885 66653 3356
Q ss_pred CCccceeecC--CCCceEEeeEEEEecccCCChhHHHHHHHHHHHHHHHhh
Q 014915 363 AYSTSVDLNG--YESGIIQASEFRTFHTPLNKQGDYVNSLRAAREFSSRMS 411 (416)
Q Consensus 363 ~y~~~v~~~~--~~~~~I~as~F~~~h~~l~~s~d~i~al~~~r~ia~~i~ 411 (416)
.|..++.+++ ++++.|.++||.+..+++.+.+|..++++..|+||++.+
T Consensus 605 ~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~ 655 (868)
T KOG1934|consen 605 FWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYS 655 (868)
T ss_pred cCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhcc
Confidence 8999999974 456679999999999999999999999999999999864
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-37 Score=320.99 Aligned_cols=383 Identities=23% Similarity=0.340 Sum_probs=287.8
Q ss_pred CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (416)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~ 80 (416)
|.+|..+..+|+ .+.++|..-+|++||+.+.+|+++++|+..++|+.||.-++.++|||.||+||||+|++.|+|+
T Consensus 422 m~~ya~~t~lr~----~~~~~sq~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~ 497 (1143)
T KOG1935|consen 422 MVAYACLTQLRW----WDAVQSQGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYR 497 (1143)
T ss_pred HHHHHHHHHHHh----hhhhccccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHH
Confidence 445666666663 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 014915 81 RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI--------- 151 (416)
Q Consensus 81 ~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL--------- 151 (416)
+..+. ++++++.++++|+|+++||+.++.+|+.+++.|+||+|.||+.+|+-+.++|+..++.|||++
T Consensus 498 e~~~~---~~~~~~~lk~tG~Svl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~ 574 (1143)
T KOG1935|consen 498 EVVKL---HEEMGELLKETGMSVLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKA 574 (1143)
T ss_pred HHhhh---HHHHHHHHHHhCcchhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 87654 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------------------------HhhccccccccchhhhHHH
Q 014915 152 -------------------------------------------------------------EVHAPILGLWGVKMVVVSV 170 (416)
Q Consensus 152 -------------------------------------------------------------~~~~p~l~~~~~k~~v~~~ 170 (416)
.+|.|+|++.++|++|++.
T Consensus 575 ~r~Di~cc~~~~p~~~~~~~~p~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg 654 (1143)
T KOG1935|consen 575 GRRDIFCCFRGNPEMATSQSVPSNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVG 654 (1143)
T ss_pred cccceeEeccCCcccCcCCCCCcccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHH
Confidence 1468999999999999999
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhcCCCCcEEEEEec-CCCCchhhhhhhhhccccCCcchHH
Q 014915 171 FLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKD-YNYSSESRHTNQLCSISQCDSNSLL 249 (416)
Q Consensus 171 f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f~~g~pv~~vv~~-~d~~~~~~~~~~~c~~~~c~~~sl~ 249 (416)
|++++++|+||+++.+.|+|..+.+|+++.-.++.+..++||+-+ |+|.|+++ .||.+. |.
T Consensus 655 ~~allg~slyg~t~~~~GLel~DvvP~~t~~~~FL~Aq~kyFsfY-~m~aVtqg~~dyp~q---Q~-------------- 716 (1143)
T KOG1935|consen 655 FLALLGASLYGMTRSTDGLELTDVVPEHTAEAAFLRAQDKYFSFY-PMFAVTQGPFDYPHQ---QQ-------------- 716 (1143)
T ss_pred HHHHHHhhhhheeeecccchhhhcCCCCCcHHHHHHHHhhhcccc-hhheeecCCCCcccH---HH--------------
Confidence 999999999999999999999999999999999999999999875 89999996 899764 22
Q ss_pred HHHHHh-hcCCCCccccCCC-----CchHHHHHhhcCCCCCccce-eccCCccCCCCC-CCCCCCC---CCCCCCCCCCC
Q 014915 250 NEISRA-SSIPELSYIAKPA-----ASWLDDFLVWTSPEAFGCCR-KFVNGTYCPPDD-QPPCCSP---DEEPCGVNGVC 318 (416)
Q Consensus 250 ~~i~~~-~~~~~~s~~~~~~-----~~Wl~df~~~~~~~~~~ccr-~~~~~~~c~~~~-~~~~~~~---~~~~~~~~~~~ 318 (416)
+|++. .++.+..|+.++. ..||.-|.+|++..+. -.. .+.+++|-+... .++.... ++-.|..+..
T Consensus 717 -ll~dyh~sf~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~-~fded~a~G~~~~~~~v~n~S~d~~lA~kL~~qtG~~- 793 (1143)
T KOG1935|consen 717 -LLDDYHQSFGSSKYVIKNENEQLPKYWLHLFRDWLQSLQR-AFDEDWAKGRFTLTSGVSNGSEDARLAYKLLCQTGSL- 793 (1143)
T ss_pred -HHHHHHHHhccCceeecCCCCCCchHHHHHHHHHHHHHHH-HHHHHHhcCccccccCCCCCChHHHHHHHHHHhcCCc-
Confidence 22222 3444455644332 4899999999875320 010 122344433222 2110000 0111222222
Q ss_pred CCCCcccccC-CCCCCCCChhhHHhhhhHhhhcCCCccccc-----CCCCCCccceeecC--CCCceEEeeEEEEecccC
Q 014915 319 KDCTTCFRHS-DLVNNRPSTEQFREKLPWFLNALPSADCAK-----GGHGAYSTSVDLNG--YESGIIQASEFRTFHTPL 390 (416)
Q Consensus 319 ~~c~~c~~~~-~~~~~~p~~~~F~~~L~~FL~~~P~~~c~~-----gG~~~y~~~v~~~~--~~~~~I~as~F~~~h~~l 390 (416)
++|..-..+. -.+.+..++|.||.||..|.+..|-..-+. --+-.|..+-+..+ .....+.-+.|-+|.+.|
T Consensus 794 ~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL 873 (1143)
T KOG1935|consen 794 DNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGL 873 (1143)
T ss_pred cchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHhhh
Confidence 2233211111 123377889999999987776444211000 00112222211100 112346677888999999
Q ss_pred CChhHHHHHHHHHHHHHHHhh
Q 014915 391 NKQGDYVNSLRAAREFSSRMS 411 (416)
Q Consensus 391 ~~s~d~i~al~~~r~ia~~i~ 411 (416)
.+..|++++.+..|.+.++++
T Consensus 874 ~dTa~Ivk~I~~iR~~c~~~~ 894 (1143)
T KOG1935|consen 874 TDTADIVKAIESIRASCEEYT 894 (1143)
T ss_pred hhHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999988
No 7
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.97 E-value=8.9e-31 Score=279.13 Aligned_cols=144 Identities=24% Similarity=0.415 Sum_probs=137.5
Q ss_pred CeehhhhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHh
Q 014915 1 MFAYISVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVK 80 (416)
Q Consensus 1 mf~yv~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~ 80 (416)
||+|++++||++.. ++||++||++|++++++|+++++|+++++|++++. +.+++|||+|+||+||+|+|.+. +
T Consensus 72 mflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~-I~eViPFLvLaIGVDnifiLa~~-~ 144 (886)
T TIGR00920 72 AVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTG-LNEALPFFLLLIDLSKASALAKF-A 144 (886)
T ss_pred HHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHhHHHhhhchhhHHHHHhh-h
Confidence 89999999999753 89999999999999999999999999999999999 69999999999999999999554 5
Q ss_pred -hccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 81 -RQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 81 -~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
++....++++||+++++++||||+++++|++++|++|++++||+||.||+|++++|+++|++|+|||+|+|
T Consensus 145 ~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~L 216 (886)
T TIGR00920 145 LSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACL 216 (886)
T ss_pred hccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999
No 8
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.97 E-value=1.7e-29 Score=225.52 Aligned_cols=134 Identities=51% Similarity=0.826 Sum_probs=130.7
Q ss_pred eeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHh
Q 014915 19 YVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVE 98 (416)
Q Consensus 19 ~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~ 98 (416)
+|+||+||++.|++++++|+++++|++.++|++++++..+++||++++||+||+|+++++|++++.+.+.++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 58999999999999999999999999999999999988789999999999999999999999999888899999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 99 ~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
+|++++.+++|++++|++++++++|++|+||+++++++++||++|+|+|||+|.
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLs 134 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLS 134 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999994
No 9
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=238.22 Aligned_cols=208 Identities=20% Similarity=0.293 Sum_probs=183.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccC-CCCHHHHHHHHHHhhhh
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM-ELVLETRISNALVEVGP 101 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~-~~~~~~ri~~~l~~~g~ 101 (416)
+++-++++++++++|++|++|+++|+|+|++. +.+..|.+++|+|+||++|++|+|.++.+ +++.+|++.+|+++.|+
T Consensus 219 ~~~~~llpL~~~l~sv~~tlG~m~llG~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~ 297 (727)
T COG1033 219 SVRRALLPLIIVLVSVLWTLGAMGLLGIPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGP 297 (727)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcc
Confidence 45557999999999999999999999999997 99999999999999999999999988754 58999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc---------------cccc---c
Q 014915 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV---HA---------------PILG---L 160 (416)
Q Consensus 102 si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~---~~---------------p~l~---~ 160 (416)
+++++.+||++||++..++.+|++++||+.+.+|++.+|+..+++.|+++.. +. +.+. +
T Consensus 298 avl~a~lTT~~GF~Sl~~s~i~~i~~~Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~~~~~~k~~~~~~~~~~l~~i~~ 377 (727)
T COG1033 298 AVLIAALTTAAGFLSLLTSSIPAIKEFGILLSIGIILAFLSSLTVLPALLILIPKGRKKREEKKDSKKGKLEKRLSKIAK 377 (727)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhhhhhhhcccccchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997721 10 0010 0
Q ss_pred --ccchhhhHHHHHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhcCCCCcEEEEEecCCCCchh
Q 014915 161 --WGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGPPLYFVVKDYNYSSES 231 (416)
Q Consensus 161 --~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f~~g~pv~~vv~~~d~~~~~ 231 (416)
...+..++++.+++.+++.||..+++.+.|.++++|+|++..+.++.+++.|++..|++++++.-|-.||+
T Consensus 378 ~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~ 450 (727)
T COG1033 378 IIARHPVTVLVVALIIVGVSLYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPE 450 (727)
T ss_pred HhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChH
Confidence 11245677778888999999999999999999999999999999999999999889999999964446663
No 10
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.91 E-value=3.5e-23 Score=226.44 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhH
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPS 102 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~s 102 (416)
++.++.+++.+++++++++|+++++|++++. +..++|.+++|+|+||.+|++++|+++ .++.+.+|++.++++++|++
T Consensus 217 ~~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~ 295 (719)
T TIGR00921 217 WWRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TTLLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRA 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHH
Confidence 4557888999999999999999999999997 788899999999999999999999876 45789999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------cccc--
Q 014915 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------------PILG-- 159 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~---------------------p~l~-- 159 (416)
++++++|+++||++..++++|.+|+||+++++|+++.++.++|++|+++.... +++.
T Consensus 296 i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv~~~~l~~l~~lPall~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 375 (719)
T TIGR00921 296 VLIALLTTSAGFAALALSEFPMVSEFGLGLVAGLITAYLLTLLVLPALLQSIDIGREKVKKEIIAIGGKSSEIEEELSKV 375 (719)
T ss_pred HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999983210 0010
Q ss_pred -cc--cchhhhHHHHHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhcCCC-CcEEEEEecCCCCch
Q 014915 160 -LW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG-PPLYFVVKDYNYSSE 230 (416)
Q Consensus 160 -~~--~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f~~g-~pv~~vv~~~d~~~~ 230 (416)
++ ..+..+++++++++++++++..+++.+.|..+++|+|++.++.++.++++|++. .|++++++..|..++
T Consensus 376 ~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~ 450 (719)
T TIGR00921 376 LSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDP 450 (719)
T ss_pred HHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCH
Confidence 00 113345667778888999999999999999999999999999999999999765 688999986666555
No 11
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.86 E-value=2e-20 Score=209.32 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCccc----chhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhh
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKST----LIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEV 99 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~----~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~ 99 (416)
...+..++++++++++++|++.++|.+.+ .....+++.+++|+|+||.+|++++|+++. ++.++++++.++++++
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~ 277 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGT 277 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34677788888999999999999998643 333445567889999999999999998874 5678999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------cc
Q 014915 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP---------------------IL 158 (416)
Q Consensus 100 g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p---------------------~l 158 (416)
|++++++++|++++|+...++++|.+|.||+.+++|++++++..+|+.|+++....+ +.
T Consensus 278 g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a~gvl~a~l~~ltllPall~l~g~~~~~~~~~~~~~~~~~~~l~~~v 357 (910)
T TIGR00833 278 GKAILGSALTVAVAFLALSLARLPSFKTLGVSCAVGVLVALLNAVTLTPALLTLEGREGLMKPGRKSKIRFIWRRLGTAV 357 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccchHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999943211 11
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhcCCC--CcEEEEEec-CCCCch
Q 014915 159 GLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVG--PPLYFVVKD-YNYSSE 230 (416)
Q Consensus 159 ~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f~~g--~pv~~vv~~-~d~~~~ 230 (416)
.++ +..+++++++++++++++..+++.+.|..+++|+|++.++.++.++++|+.+ .|++++++. .|+.++
T Consensus 358 ~r~--p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p 430 (910)
T TIGR00833 358 VRR--PWPILVTTLIISGVSLLALPLIRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNP 430 (910)
T ss_pred Hhc--cHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCH
Confidence 122 3456677788888999999999999999999999999999999999999776 899999995 577666
No 12
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.75 E-value=6.7e-17 Score=180.45 Aligned_cols=188 Identities=16% Similarity=0.182 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhhhhHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~si~ 104 (416)
..+..++++.+++++++|++.++|.+++. ++.+.+.+++|+|+||.+|++++|++.. ++.+.++++.+++++.|++++
T Consensus 295 ~~l~~l~~i~~s~~~~~~~~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~ 373 (862)
T TIGR03480 295 LVFAVLVTLIVGLILTAAFATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALL 373 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35667788889999999999999999997 8888899999999999999999998763 467888999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------ccccccchhhh
Q 014915 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP-----------------ILGLWGVKMVV 167 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p-----------------~l~~~~~k~~v 167 (416)
++++|+++||++...+++|.++.||+.+++|+++.++..+|++|+++..+.| +..++ +..+
T Consensus 374 ~s~lTt~~gf~~l~~~~~~~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v 451 (862)
T TIGR03480 374 LAALATAAGFFAFLPTDYKGVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPGYATLAPLDAFLRRH--RRPV 451 (862)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCccchhHHHHHHHHHhc--cHHH
Confidence 9999999999999999999999999999999999999999999999954311 11122 3456
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhcCCCC
Q 014915 168 VSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRVGP 216 (416)
Q Consensus 168 ~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f~~g~ 216 (416)
++++++++++++++..+++.+.|+.+++|++++..+.++.+.+.+..++
T Consensus 452 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~ 500 (862)
T TIGR03480 452 LGVTLILGIAALALLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSP 500 (862)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhccCCCchHHHHHHHHHhCcccCC
Confidence 6677788889999999999999999999999999999999888876554
No 13
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.66 E-value=1e-15 Score=152.80 Aligned_cols=134 Identities=25% Similarity=0.439 Sum_probs=118.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH----HHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALV 97 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl----~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~ 97 (416)
++..++..++++++++++++|+ ..+.|.+++.++..++..+++|+|+|+.+|++++|+++. ++.+.++++.++++
T Consensus 166 s~~~~l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~ 245 (333)
T PF03176_consen 166 SVRAALLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVR 245 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 3566788999999999999999 345677887644555666889999999999999999874 46788899999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014915 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (416)
Q Consensus 98 ~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p 156 (416)
++|++++++++|+++||++..++++|.+|+||+.+++|++++++..+|++|++|....+
T Consensus 246 ~~g~~i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~ 304 (333)
T PF03176_consen 246 STGRAILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGR 304 (333)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999964433
No 14
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.64 E-value=2.1e-15 Score=162.41 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (416)
++.-++.+++.++++++|++|+|+++|+|+++ +...+--+++|+|+||++|++++|++++.+..++|++.+++.++|++
T Consensus 591 s~~~~i~~iipi~~~v~~~~~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~a 669 (727)
T COG1033 591 SPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKA 669 (727)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchH
Confidence 45668999999999999999999999999998 78888889999999999999999998865433999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014915 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~ 154 (416)
++.+++|++.||++..+|+.|.+++||+.++++++++.+.+++++||+|...
T Consensus 670 il~s~ltt~~GF~aLi~S~f~i~snfGll~~~~il~sl~asl~~lPall~~~ 721 (727)
T COG1033 670 ILASALTTAIGFLALIFSPFPIISNFGLLTVIGILLSLLASLVLLPALLVLL 721 (727)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998643
No 15
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.60 E-value=1.3e-14 Score=159.06 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHH
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si 103 (416)
+..++.+++.+++++++++|+++++|++++. ...++..+++|+|+||.+|++++|+++....+.++++.++++++|+++
T Consensus 591 ~~~~l~~~i~~~~~~~~~~g~~~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai 669 (719)
T TIGR00921 591 PIKAVFPLIAIGSGILWAIGLMGLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGI 669 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHH
Confidence 5668888999999999999999999999997 777888899999999999999999987654789999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 104 ~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
+.+++|+++||+.+++++.|.+|.||+..+++++++++..++++||+|
T Consensus 670 ~~s~lt~~~gf~~l~~s~~~~~~~~g~~~~~~i~~~~~~~l~llPall 717 (719)
T TIGR00921 670 LFSGLTTAGGFLSLLLSHFPIMRNFGLVQGIGVLSSLTAALVVFPALL 717 (719)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987
No 16
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.43 E-value=9.7e-13 Score=147.19 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=107.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (416)
++..++..++.+++++++++|+++++|++++. ...++-.+++||||||.+|++++|++...... ....++|++
T Consensus 735 s~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~-~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~~------~~~~~~g~a 807 (862)
T TIGR03480 735 RVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNF-ANIIALPLLLGLGVDFGIYMVHRWRNGVDSGN------LLQSSTARA 807 (862)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHhhhhhhHHHHHHHHHHhccchh------HHHhhhHHH
Confidence 44457888999999999999999999999997 66777778899999999999999987643111 112467999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
+++|++|+++||++.++++.|++++||+.+++|++++++..++++||+|
T Consensus 808 i~~saltt~~gf~~l~~s~~~~~~~~G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 808 VFFSALTTATAFGSLAVSSHPGTASMGILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999987
No 17
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.35 E-value=2.5e-11 Score=136.48 Aligned_cols=206 Identities=16% Similarity=0.218 Sum_probs=169.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhc----CcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHH
Q 014915 22 SKVLLGLSGVILVMLSVLGSVGFFSAIG----VKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNAL 96 (416)
Q Consensus 22 sk~~l~l~gv~~v~~sv~~s~Gl~~~~G----~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l 96 (416)
-.+..++..++++.++...+.|+..++. ...+.....+...+.+|+|+|+...++.+||+.. ++.++++.++.++
T Consensus 206 ~s~i~a~lpL~t~~~s~~~a~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~ 285 (937)
T COG2409 206 RSVITAFLPLITVGLSLLVAQGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAY 285 (937)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 3455678888999999999999988543 3333356677778999999999999999999764 4679999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------
Q 014915 97 VEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA--------------------- 155 (416)
Q Consensus 97 ~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~--------------------- 155 (416)
+.+|+.++.++.|-+++++...+.++|.++..+++++++|++..+..+|+.||+|....
T Consensus 286 ~tag~~V~~sg~tV~~a~~~l~~a~~~~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~~~~~~~~~~w~~~~ 365 (937)
T COG2409 286 RTAGKTVAFSGLTVAIALLGLSFARLPFLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPDPKRASESRFWRRVG 365 (937)
T ss_pred HhccceeehhhhHHHHHHHHHHhcccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCCcchhhhcchhhhhe
Confidence 99999999999999999999999999999999999999999999999999999994221
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhcCC--CCcEEEEEec-CCCCc
Q 014915 156 PILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYLRV--GPPLYFVVKD-YNYSS 229 (416)
Q Consensus 156 p~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f~~--g~pv~~vv~~-~d~~~ 229 (416)
.++.+++. .+++..++.++........++.|.+....+|.+.+.++.++.++++|+. ..|.+++++. .|..+
T Consensus 366 ~~v~~~P~--~~l~~s~~ill~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~ 440 (937)
T COG2409 366 TLVVRRPL--AILVASLAILLVLALPLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRT 440 (937)
T ss_pred eEEeeccH--HHHHHHHHHHHHHHHHhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcC
Confidence 22333332 3445555666666777888999999999999999999999999999965 4689999995 55443
No 18
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.32 E-value=9.9e-12 Score=115.15 Aligned_cols=118 Identities=13% Similarity=0.156 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHHHhhhh
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVGP 101 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~g~ 101 (416)
..++..++.+..++++++|++.++|++++. ...+.+.+++|+++||.+|+.+++++.. ++.+.++++.++.++.++
T Consensus 71 ~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~aIvv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~ 149 (192)
T TIGR00916 71 RGAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDTVVIFDRIREELRKYKGRTFREAINLGINQTLS 149 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCeEEehHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 345566677777899999999999999997 8888999999999999999999988653 467899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHH
Q 014915 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQ 143 (416)
Q Consensus 102 si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~ 143 (416)
+++.|++|++++|+...+.+.+.++.|++...+|++..++..
T Consensus 150 ~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 150 RIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988754
No 19
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.28 E-value=3.2e-11 Score=135.58 Aligned_cols=129 Identities=24% Similarity=0.207 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCc-----ccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHh
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVE 98 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~-----~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~ 98 (416)
+...+..++++++++.+++|+..+++.+ ++..+..+++.+++|+|+||.+|++++|+++..+ +.++++.+++++
T Consensus 768 ~~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~-g~~~av~~a~~~ 846 (910)
T TIGR00833 768 PVAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPA-GNRTGIIRALGS 846 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhc-CccHHHHHHHHH
Confidence 3457788899999999999999876544 3332344557788999999999999999988643 357889999999
Q ss_pred hhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 014915 99 VGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLD-FFLQVTAFVALIEV 153 (416)
Q Consensus 99 ~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~-fl~~lt~f~alL~~ 153 (416)
+|++|+.+++|++++|++..++++|.+++||+..++||+++ ++..+++.||++..
T Consensus 847 tg~~I~~a~~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l 902 (910)
T TIGR00833 847 TGGVITAAGLVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLL 902 (910)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999995 66678888998853
No 20
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.24 E-value=3.9e-11 Score=117.92 Aligned_cols=129 Identities=10% Similarity=0.186 Sum_probs=118.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHHHhhh
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~g 100 (416)
+..++..++.+..+++.++|++.++|++++. ...+...+++|+++||.+++.+++++.. ++.+.+|.+.++..+..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~-~siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~ 228 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDL-TVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTL 228 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 4468899999999999999999999999997 7888888899999999999999988653 25789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 101 ~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
.+++.|++|++++|+...+...+.++.|++...+|++...+.++++.|+++..
T Consensus 229 ~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l~~Gli~~~~~sl~i~p~l~~~ 281 (289)
T PRK13022 229 SRTIITSLTTLLVVLALYLFGGGTLHDFALALLIGIIVGTYSSIFVASPLLLW 281 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999998753
No 21
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.23 E-value=1.3e-10 Score=131.25 Aligned_cols=131 Identities=17% Similarity=0.138 Sum_probs=117.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (416)
.++-++..++++++.++..+|+|++.|+++++ +.++.-.+.+|+|||+..|+.++|.... .++++|+.++|+++|.|
T Consensus 988 ~~~~a~iv~l~v~~i~v~v~G~M~lwgI~Lna-VS~vnLimsIGisVefsaHI~~~F~~~~--~~r~eR~~~AL~~~G~p 1064 (1145)
T TIGR00918 988 NPWTAGLIVLVLALMTVELFGMMGLLGIKLSA-IPVVILIASVGIGVEFTVHIALGFLTAI--GDRNRRAVLALEHMFAP 1064 (1145)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCccH-HHHHHHHHHHhhhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHhhHH
Confidence 45556777788888999999999999999998 7888888889999999999999998543 35799999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014915 103 ITLASLSEFLAFAVGSFIPMP-ACRVFSMFAALAVLLDFFLQVTAFVALIEVHAP 156 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ip-av~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p 156 (416)
++.+++|+++|.+++++++.. .++.|+...++.|++.++..++++|.+|....|
T Consensus 1065 Vl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS~~Gp 1119 (1145)
T TIGR00918 1065 VLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLSMFGP 1119 (1145)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987 779999999999999999999999999976654
No 22
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.21 E-value=1.7e-10 Score=126.81 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (416)
.++..++.+.++++.++|++.++|.+++. ...+-..+++|+++||.+++.+++++. .++.+.++++.++.++++.+++
T Consensus 290 ~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il 368 (755)
T PRK13024 290 PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTIL 368 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 58888888999999999999999999997 778888899999999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.|++|++++|+...+...+++|.|++...+|+++.++..+++.|+++.
T Consensus 369 ~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l~~ 416 (755)
T PRK13024 369 DSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLLLE 416 (755)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888889999999999999999999999999884
No 23
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.17 E-value=3e-10 Score=129.30 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
++...+++.++++.+++++.++|+++|. +......+.+|+.|||++++++..++. .++.++.+++.++.++++.+++.
T Consensus 359 ~li~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~ 437 (1025)
T PRK10614 359 TLIPAVAVPVSLIGTFAAMYLCGFSLNN-LSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLS 437 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5556677789999999999999999997 777777788899999999988666554 45678899999999999999999
Q ss_pred HHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------ccc---------
Q 014915 106 ASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA---------------PIL--------- 158 (416)
Q Consensus 106 tslT~~~~F~~g~~s~i---pav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~---------------p~l--------- 158 (416)
+++|++++|+..++.+- +.++.|++..++++++.++..+|+.|++..++. ..+
T Consensus 438 stltti~~f~Pl~~~~g~~g~~~~~~~~~~~~~l~~S~~~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Y~~ 517 (1025)
T PRK10614 438 MSLSLVAVFLPLLLMGGLPGRLFREFAVTLSVAIGISLLVSLTLTPMMCAWLLKSSKPREQKRLRGFGRMLVALQQGYGR 517 (1025)
T ss_pred HHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhhHHHHHHHHHHHHHH
Confidence 99999999999987655 569999999999999999999999999874321 001
Q ss_pred -ccc--cchhhhHHHHHHHHHHHHHHhhhcccccccc---------ccCCCCchhhhhHHHHh
Q 014915 159 -GLW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGYFDNTT 209 (416)
Q Consensus 159 -~~~--~~k~~v~~~f~~~~~~si~g~~~i~~gld~~---------~~lp~dS~~~~~~~~~~ 209 (416)
.++ ..|..++++++++++++++...++...+-+. -.+|+++.+.+-.+.++
T Consensus 518 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~~~gtsl~~t~~~~~ 580 (1025)
T PRK10614 518 SLKWVLNHTRWVGVVLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMRGKLQ 580 (1025)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEEECCCCCCHHHHHHHHH
Confidence 001 1244566677777888888877776655322 23477766654444433
No 24
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.06 E-value=3e-09 Score=120.97 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
++...+++-+|++.+++++.++|+++|. ++.+...+.+|+.|||+++++..+++. .++.++.+++.++.++.+.|++.
T Consensus 358 ~l~~~~~IP~s~~~~~~~l~~~G~~ln~-~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~ 436 (1017)
T PRK09579 358 VLIPVVTIPLSMIGVLFFMQMMGYSINL-LTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVS 436 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchH-HHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3445567778999999999999999997 666776777888899999999887664 45778999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 106 tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
|++|++++|+-..+.+ -+.++.|++....++++.+++++|+.|++..
T Consensus 437 stlTti~~f~Pl~f~~g~~g~~~~~l~~~v~~~l~~S~l~al~l~P~l~~ 486 (1017)
T PRK09579 437 MTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCA 486 (1017)
T ss_pred HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886643 2668999999999999999999999998874
No 25
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.05 E-value=1.9e-09 Score=117.41 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (416)
.|+..++...+.++.++|++.++|.++|. ....--.+.+|++||+.+++.++++++ +.+.+.++++.++.++++.+++
T Consensus 302 ~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il 380 (758)
T PRK13023 302 LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIV 380 (758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57788888899999999999999999997 777777788999999999999999865 4467899999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.+++|++++|+...+...++++.|++...+|++..++..+++-|+++.
T Consensus 381 ~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~~ 428 (758)
T PRK13023 381 DANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIA 428 (758)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888999999999999999999999999998884
No 26
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=98.98 E-value=7.4e-09 Score=114.20 Aligned_cols=126 Identities=20% Similarity=0.260 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (416)
.|+...+...++++.++|++.++|.++|. +...--.+.+|++||+.+++..+.+++ +.+.+..+++.++.++++.+++
T Consensus 396 ~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il 474 (855)
T PRK14726 396 LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIV 474 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888888899999999999999999997 655555677899999999999998776 4467889999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.+++|++++|+...+....+++.|++...+|++..++..+|+-|+++.
T Consensus 475 ~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~ 522 (855)
T PRK14726 475 DANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVA 522 (855)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887889999999999999999999999999874
No 27
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=98.98 E-value=1e-08 Score=116.93 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc--CCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g~si~ 104 (416)
++..++++.++++.++|++.++|++++. ++.+.+.+.+|+.|||++|+++.+++.. .+.++.+++.++.++.+.+++
T Consensus 365 ~li~~~~iP~si~~t~~~~~~~G~~ln~-~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~ 443 (1037)
T PRK10555 365 TLIPTIAVPVVLMGTFSVLYAFGYSINT-LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALV 443 (1037)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5566677788999999999999999997 7888888889999999999999987753 477999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.+++|++++|+-..+.+ -.-.+.|++....++++.++..+|+.|++..
T Consensus 444 ~stltti~~flPl~~~~G~~g~~~~~l~~~v~~~l~~S~~~al~l~P~l~~ 494 (1037)
T PRK10555 444 GIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCA 494 (1037)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887642 2446889999999999999999999998774
No 28
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.97 E-value=9.6e-09 Score=117.21 Aligned_cols=185 Identities=17% Similarity=0.194 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (416)
++...+++.+|++.+++++.++|+++|. ++.+...+.+|+.|||++++++.+++. .++.++.+++.++.++.+++++
T Consensus 365 ~li~~~~iP~s~~~~~~~~~~~g~~ln~-~sl~gli~~iGi~VD~aIvv~e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~ 443 (1044)
T TIGR00915 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHhhheecceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4566667788999999999999999997 777777788888899999999887664 3467899999999999999999
Q ss_pred HHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-----------c--------c---
Q 014915 105 LASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHA-P-----------I--------L--- 158 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s---~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~-p-----------~--------l--- 158 (416)
.+++|++++|+-.++. .-+..+.|++..+.++++.++..+++.|++...+. + . +
T Consensus 444 ~ttltti~~flPl~~~~G~~g~~~~~~~~~i~~~l~~S~l~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 523 (1044)
T TIGR00915 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGEHHEFKGGFFGWFNRMFDRS 523 (1044)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccchHHHHHHHHHHHH
Confidence 9999999999988764 35678999999999999999999999998763210 0 0 0
Q ss_pred cc-------c--cchhhhHHHHHHHHHHHHHHhhhccccccc---------cccCCCCchhhhh---HHHHhhhc
Q 014915 159 GL-------W--GVKMVVVSVFLAFTVASIALSTRIEAGLEQ---------QIVLPRDSYLQGY---FDNTTEYL 212 (416)
Q Consensus 159 ~~-------~--~~k~~v~~~f~~~~~~si~g~~~i~~gld~---------~~~lp~dS~~~~~---~~~~~~~f 212 (416)
.+ + ..|..++++++++++.+++...+++.++=+ .-.+|+++.+.+- .+.+++++
T Consensus 524 ~~~y~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~f~P~~d~~~~~v~v~~p~gtsl~~t~~~~~~ve~~l 598 (1044)
T TIGR00915 524 THGYENGVGKILKRRGRYLLVYVLLVGGMVWLFVRLPTSFLPDEDQGVFMTIVQLPAGATAERTQKVLAQVEKYL 598 (1044)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCceEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 00 0 124455666667777777777666665422 1257888765544 34444544
No 29
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=98.97 E-value=2.2e-09 Score=109.92 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (416)
.|+..++...++++.++|++.++|.+++. ...+--.+++|+++||.+++.+++++. +++.+..+++.++.++++.+++
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~ 350 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVDANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIF 350 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeeeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 57888888999999999999999999997 777777888999999999999998875 4567889999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVAL 150 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~al 150 (416)
.+++|++++|+...+...+.++.|++...+|+++.++..+++-..+
T Consensus 351 ~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~~ 396 (397)
T TIGR01129 351 DANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRLL 396 (397)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988876667899999999999999999999876654
No 30
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=98.96 E-value=6.8e-09 Score=115.52 Aligned_cols=128 Identities=20% Similarity=0.253 Sum_probs=112.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (416)
.++.++..+++++.-.+..+|+|.+.|+++++ +.++.-.+.+|++||+..|+.++|.+.... ++++|+.++++++|.|
T Consensus 668 ~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~p 745 (798)
T PF02460_consen 668 NPRSSLIVTLSILSIDVGVIGFMSLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWP 745 (798)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHH
Confidence 44445555555566666778999999999998 788888888899999999999999977644 8999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
++..+++|.+|.+.+++++.+.++.|.-...+.+++.++..+.++|++|.
T Consensus 746 v~~~~~st~l~~~~l~f~~~~~~~~ff~~~~l~~~~~~~hglv~lPv~ls 795 (798)
T PF02460_consen 746 VLQGALSTFLGVLPLAFSPSYIFRVFFKTVFLVIIFGLLHGLVFLPVLLS 795 (798)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999884
No 31
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=98.96 E-value=2.7e-09 Score=111.81 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (416)
.|+..++...++++.++|++.++|.++|. ...+--.+++|+++|+.+++..+.++. +.+.+..+++.++.+++..+++
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il 435 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVDANVLIFERIREELREGRSLRSAIEAGFKRAFSTIL 435 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEeceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999997 777777788999999999999998865 4567899999999999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 105 LASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
.+++|++++|+...+.....++.|++...+|+++.++..+++.|+++..
T Consensus 436 ~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~l~~~ 484 (498)
T PRK05812 436 DSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRALVNL 484 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876667899999999999999999999999998753
No 32
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.95 E-value=9.4e-09 Score=117.22 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
++...+++.+|++.+++++.++|+++|. ++.....+.+|+.|||+++++..+++. .++.++.+++.++.++.+.+++.
T Consensus 368 ~~i~~~~ip~s~~~~~~~l~~~g~~ln~-~sl~gl~~~iG~~Vd~aIvv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~ 446 (1040)
T PRK10503 368 TIIPGVAVPLSLIGTFAVMVFLDFSINN-LTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIIS 446 (1040)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCHHH-HHHHHHHHheeeeecCeEEEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5666677889999999999999999997 666666677888899999998877665 34667789999999999999999
Q ss_pred HHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------ccc---cc---
Q 014915 106 ASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHA----------------PIL---GL--- 160 (416)
Q Consensus 106 tslT~~~~F~~g~~s~i---pav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~----------------p~l---~~--- 160 (416)
+++|++++|+-..+++- +.++.|++..++++++.+++.+|+.|.+..++. +.+ .+
T Consensus 447 ~tltti~~f~Pl~~~~g~~G~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~y~ 526 (1040)
T PRK10503 447 LTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASERMFDRVIAAYG 526 (1040)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccchHHHHHHHHHHHHHHHHH
Confidence 99999999998887654 678999999999999999999999999864221 001 00
Q ss_pred ----c--cchhhhHHHHHHHHHHHHHHhhhccccccc---------cccCCCCchhhhh---HHHHhhhc
Q 014915 161 ----W--GVKMVVVSVFLAFTVASIALSTRIEAGLEQ---------QIVLPRDSYLQGY---FDNTTEYL 212 (416)
Q Consensus 161 ----~--~~k~~v~~~f~~~~~~si~g~~~i~~gld~---------~~~lp~dS~~~~~---~~~~~~~f 212 (416)
+ ..|..++++.+++++++++....++.++=| .--+|+++.+.+. .+.++++.
T Consensus 527 ~~l~~~l~~~~~~~~~~~~~~~~s~~~~~~l~~~f~P~~d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l 596 (1040)
T PRK10503 527 RGLAKVLNHPWLTLSVALSTLLLTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSSSFANMAQRQRQVADVI 596 (1040)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCccCCccCCcEEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 0 124456666667777777777666665522 1256776665444 34444444
No 33
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=98.93 E-value=2.1e-08 Score=114.46 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cC-CCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-ELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~-~~~~~~ri~~~l~~~g~si~ 104 (416)
++...+++-+|++.++.++.++|+++|. ++..--.+.+|+=|||+++++...+|. .. +.+..++..++.+++++|++
T Consensus 358 ~liv~~~IPisi~~t~~~m~~~g~slN~-~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~ 436 (1021)
T PF00873_consen 358 ALIVALSIPISILGTFIFMYLFGISLNI-MSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPIL 436 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTBEH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchH-HHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 5555667778999999999999999997 555554555566699999999776544 44 88999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------h
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV---------------------------H 154 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~---------------------------~ 154 (416)
.+++|++++|+-..+.+ =.-++.|++..++++++.++..+|+.|++..+ |
T Consensus 437 ~stlTti~vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y 516 (1021)
T PF00873_consen 437 ASTLTTIAVFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGY 516 (1021)
T ss_dssp HHHHHHHHHTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccch
Confidence 99999999999988755 44578899999999999999999999987721 1
Q ss_pred ccccccc-cchhhhHHHHHHHHHHHHHHhhhccc
Q 014915 155 APILGLW-GVKMVVVSVFLAFTVASIALSTRIEA 187 (416)
Q Consensus 155 ~p~l~~~-~~k~~v~~~f~~~~~~si~g~~~i~~ 187 (416)
.+.+.+. ..|..++++++++++++++...+++.
T Consensus 517 ~~lL~~~L~~~~~~l~i~l~l~i~s~~l~~~l~~ 550 (1021)
T PF00873_consen 517 RRLLRWALRHPKLVLLIALLLLILSLFLFPFLPK 550 (1021)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHCTSEB
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhhcccccCCc
Confidence 2211110 12445666677777778887766543
No 34
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=98.91 E-value=8.3e-09 Score=99.27 Aligned_cols=121 Identities=12% Similarity=0.224 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-c--CCCCHHHHHHHHHHhhh
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-P--MELVLETRISNALVEVG 100 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~--~~~~~~~ri~~~l~~~g 100 (416)
+..++..++.+.++++.++|++.++|++++. ...+-..+++|+.+||.+++.+++++. + ++.+..+++.++.++..
T Consensus 121 ~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~ 199 (246)
T TIGR00966 121 WRFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSINDTVVVFDRIRENLRKYTRKTFTEVINLSINQTL 199 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccCeEEEehHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 3457888889999999999999999999997 888888899999999999999888764 2 36789999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHH
Q 014915 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVT 145 (416)
Q Consensus 101 ~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt 145 (416)
.+++.|++|++++|+...+.+-+.++.|++...+|+++..+.++.
T Consensus 200 ~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 200 SRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888899999999999999998887764
No 35
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=98.91 E-value=1.9e-08 Score=114.77 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (416)
++...+++-++++.+++++.++|+++|. ++.+...+.+|+.|||++++++.+++. ..+.++.+++.++.++.+++++
T Consensus 365 ~li~~~~iP~sl~~~~~~~~~~g~~ln~-~sl~glil~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~~~~~v~~~i~ 443 (1049)
T PRK15127 365 TLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALV 443 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHHHhhccceEEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555667778999999999999999997 777778888999999999999988765 2477889999999999999999
Q ss_pred HHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s---~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.+++|++++|+-.++. .-.-++.|++..+.++++.++..+|+.|++..
T Consensus 444 ~~tltt~~~f~Pl~~~~G~~g~~~~~~~~~~~~~l~~S~l~al~~vP~l~~ 494 (1049)
T PRK15127 444 GIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA 494 (1049)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998873 33456889999999999999999999998763
No 36
>PRK09577 multidrug efflux protein; Reviewed
Probab=98.90 E-value=1.4e-08 Score=115.76 Aligned_cols=125 Identities=20% Similarity=0.240 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (416)
++..++++-++++.+++++.++|+++|. ++.+...+.+|+.|||++++++.+++. ..+.++.+++.++.++++++++
T Consensus 364 ~liv~~~iP~s~~~~~~~m~~~g~~ln~-~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~ 442 (1032)
T PRK09577 364 TLIPTLVVPVALLGTFGVMLAAGFSINV-LTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIV 442 (1032)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 5666777888999999999999999997 788888899999999999999988765 3477899999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.+++|++++|+-.++.+ -.-.+.|++..++++++.++..+|+.|+++.
T Consensus 443 ~~tlt~~~~flPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~ 493 (1032)
T PRK09577 443 GITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCA 493 (1032)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876643 4557999999999999999999999998874
No 37
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=98.83 E-value=2.3e-08 Score=98.41 Aligned_cols=122 Identities=12% Similarity=0.185 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHH
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSI 103 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si 103 (416)
++.++..++.....++.++|++.++|++++. ...+.-.+++|+++||.+++.+++++.. .+.++++.+++++.
T Consensus 158 ~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~-~~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~---- 230 (292)
T PRK08578 158 PVPSLAVILSAFSDIIIALALMNLFGIELSL-ATVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG---- 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----
Confidence 5668888888899999999999999999998 4444444778999999999999987653 57888888888543
Q ss_pred HHHHHHHHHHHHhhccC----ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 104 TLASLSEFLAFAVGSFI----PMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 104 ~~tslT~~~~F~~g~~s----~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
..+++|++++|+...+. ..+.+|.|++...+|++++++.++.+-++++.
T Consensus 231 i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l~~Gli~s~~~tl~~~~~~l~ 283 (292)
T PRK08578 231 ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVLIFGLLADLMNTWLLNAGILR 283 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999887643 57999999999999999999999999999885
No 38
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=98.80 E-value=1.9e-07 Score=86.29 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc---cCCCCHHHHHHHHHHhhhh
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ---PMELVLETRISNALVEVGP 101 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~---~~~~~~~~ri~~~l~~~g~ 101 (416)
..++.+++..+..++.++|++.++|+++++ .....-.+++|.++||.+++.++.+++ .++.+.++++.++++++..
T Consensus 55 ~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~ 133 (189)
T PF02355_consen 55 RFALAAIIALIHDVLITLGIFSLFGIELTL-PSIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLS 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Confidence 358888888888899999999999999998 666777889999999999999999887 2467899999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 102 SITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 102 si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
.+..|++|+.++.+...+..-.+++.|++...+|++.....++..-++++.
T Consensus 134 r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~iGvi~~~~ss~~ia~~l~~ 184 (189)
T PF02355_consen 134 RTIDTSLTTLLAALILFFFGGGSLKGFALTLIIGVIIGTYSSLFIARPLLY 184 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888999999999999999999988877776653
No 39
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.79 E-value=7.2e-08 Score=108.16 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
|+...+.+++.++.++|++.++|.+++. +..+--.+++|++||+.+++..+.++. ..+.+..+++.++.+++..+|+.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 6667777778889999999999999997 777777788999999999999988776 44678999999999999999999
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 106 ASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 106 tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
|++|++++++...+....+++.|++...+|+++..+..+++-|+++.
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~ 1059 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFM 1059 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876666779999999999999999999999998874
No 40
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.79 E-value=5.6e-08 Score=111.20 Aligned_cols=160 Identities=18% Similarity=0.136 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cC-----C-----CCHHHHHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-----E-----LVLETRISNA 95 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~-----~-----~~~~~ri~~~ 95 (416)
++...+++-+|++.++.++.++|+++|. ++.. -+++|+-|||+++++...++. .+ + .++.+++.++
T Consensus 368 ~liv~~~iP~s~~~~~~~m~~~g~sln~-~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g 444 (1051)
T TIGR00914 368 ALIAATVIPLSLLITFIGMVFQGISANL-MSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAA 444 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHH
Confidence 5566667778999999999999999997 4433 466799999999988764332 11 2 4667889999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------
Q 014915 96 LVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH------------------ 154 (416)
Q Consensus 96 l~~~g~si~~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~------------------ 154 (416)
.++.+.|++.+++|++++|+-.++.+ -..++.|++..++++++.++..+|+.|++...+
T Consensus 445 ~~~~~~pil~stlTti~~flPl~~~~g~~g~~~~~~~~~v~~~l~~Sll~al~~~P~l~~~~~~~~~~~~~~~~~~~~~~ 524 (1051)
T TIGR00914 445 SREVRRPLIFGQLIITLVFLPIFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKR 524 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccChHHHHHHH
Confidence 99999999999999999999986533 256799999999999999999999999987432
Q ss_pred --ccccccc-cchhhhHHHHHHHHHHHHHHhhhccccc
Q 014915 155 --APILGLW-GVKMVVVSVFLAFTVASIALSTRIEAGL 189 (416)
Q Consensus 155 --~p~l~~~-~~k~~v~~~f~~~~~~si~g~~~i~~gl 189 (416)
.+++... ..|..+++++++++++++++..+++.++
T Consensus 525 ~Y~~~l~~~l~~~~~~i~~~~~ll~~~~~~~~~l~~~f 562 (1051)
T TIGR00914 525 RYEPLLERVLAWPAVVLGAAAVSIVLVVWIASRVGGEF 562 (1051)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence 1111100 1244667777777888888877776665
No 41
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=98.69 E-value=8.8e-08 Score=105.54 Aligned_cols=128 Identities=13% Similarity=0.227 Sum_probs=115.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHHHhh
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (416)
++..++.+++..+.-++.++|+++++|+++++ .....-..++|.++||.+++.+++|+.. ++.+.++.+..++.++
T Consensus 599 ~~~~~~~aiial~~dvii~~g~~~l~~~~~~~-~~iaall~iiGysvndtIvi~dRirE~~~~~~~~~~~~~v~~si~~t 677 (755)
T PRK13024 599 EWTFSLGAILALLHDVLIVIGFFSLFRLEVDL-TFIAAILTIIGYSINDTVVVFDRIRENLRLYKKKDLREIVNKSINQT 677 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcH-HHHHHHHHHHhheeeceEEEEhHHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 55578999999999999999999999999998 5565666788999999999999998863 4578999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 100 g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
....+.|++|+.+++++..+...+.++.|++...+|+++...-++.+-++++
T Consensus 678 l~rti~ts~tt~~~~~~L~~~g~~~i~~fa~~l~iGii~g~~ssifia~~l~ 729 (755)
T PRK13024 678 LSRTINTSLTTLLVLLALLIFGGSSLRNFSLALLVGLIVGTYSSIFIAAPLW 729 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887777766
No 42
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=98.63 E-value=2.3e-07 Score=98.41 Aligned_cols=127 Identities=19% Similarity=0.208 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~-G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si 103 (416)
.|+...+...+.++.++|+++++ |.++|. +...--.+.+|+.||+.+++..+.+++ +.+.+..+++.+..+++..+|
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVDanIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~I 542 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTI 542 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhccCcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 47778888899999999999998 999997 666666788899999999999988776 456788999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 104 ~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
+.+++|++++|+...+..-.++|.|++...+|++..++..+++-|+++..
T Consensus 543 ldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~l~~~ 592 (604)
T PRK12933 543 FDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINL 592 (604)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998765556799999999999999999999988888754
No 43
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=98.62 E-value=2.3e-07 Score=91.34 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHHHhhh
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEVG 100 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~g 100 (416)
+..++..+++....++.++|.+.++|.+++. ...+--..++|+.++|.+++.++.++.. ++.+.+|.+.++..+.-
T Consensus 149 ~~~~l~al~al~~dv~~~l~~l~l~g~~l~~-~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~l 227 (297)
T PRK13021 149 WRLASGALFALVHDVIFVLAFFALTQMEFNL-TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATF 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 4567888899999999999999999999997 7777777889999999999999998653 45688999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 101 PSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 101 ~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
.++++|++|++++.+..++..-+.++.|++....|++...+.++.+-.+++
T Consensus 228 rr~l~TslTt~l~llpL~l~G~~~~~~fA~~li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 228 SRTMVTSGTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988878899999999999999999999887666665
No 44
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=98.61 E-value=1.7e-07 Score=105.81 Aligned_cols=181 Identities=19% Similarity=0.263 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHHH
Q 014915 28 LSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLAS 107 (416)
Q Consensus 28 l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~ts 107 (416)
+...+.+-+|++.+|++|.++|+++|. ++..--.|.+|+=|||+++.+...+|..++.++.|+..+++++++-+++-++
T Consensus 357 lI~~iaiPlsLlgtf~~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~T 435 (1009)
T COG0841 357 LIPALAVPVSLLGTFAVMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAIT 435 (1009)
T ss_pred EEeeeechHHHHHHHHHHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344455668999999999999999997 6666666777777899999987766543389999999999999999999999
Q ss_pred HHHHHHHHhhccC-Ch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------------------c---c
Q 014915 108 LSEFLAFAVGSFI-PM--PACRVFSMFAALAVLLDFFLQVTAFVALIEVH-------------------------A---P 156 (416)
Q Consensus 108 lT~~~~F~~g~~s-~i--pav~~F~i~aa~~vl~~fl~~lt~f~alL~~~-------------------------~---p 156 (416)
+|.++.|+-.++. .+ .-.|+|++..++++++..+..+|+-|++=.++ . .
T Consensus 436 lvliaVF~Pi~f~~G~~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~~~~~~~~~~~~~~~~~Y~~~l~ 515 (1009)
T COG0841 436 LVLIAVFLPMAFMGGSTGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPKGFFGWFNRFFDRLEDRYQRGLR 515 (1009)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhhhhhHHHHHHHHHHH
Confidence 9999999987653 22 34699999999999999999999988865211 0 0
Q ss_pred ccccccchhhhHHHHHHHHHHHHHHhhhccccccccc---------cCCCCchhhhh---HHHHhhh
Q 014915 157 ILGLWGVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGY---FDNTTEY 211 (416)
Q Consensus 157 ~l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~---------~lp~dS~~~~~---~~~~~~~ 211 (416)
++.++ |..++++++++++.+.|+...++.++=|.+ -+|+++.+.+- .+.++++
T Consensus 516 ~~L~~--~~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~ 580 (1009)
T COG0841 516 WVLRR--RALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDW 580 (1009)
T ss_pred HHHhh--HHHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11222 667888888999999999999998873332 57888654443 4444454
No 45
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=98.55 E-value=1.3e-06 Score=100.62 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHH
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~ 104 (416)
+-++..++++.++++-.+|+|.+.|+++|. +..+.-.+.+|++|+..-|+.++|.+.. ..++.+|+.++++++|.|++
T Consensus 1074 ~~aliv~l~I~~i~~~~~g~M~~~gisLN~-vSlv~Li~avGisV~f~~hI~~~f~~~~-~~~~~~ra~~al~~vg~~v~ 1151 (1204)
T TIGR00917 1074 LSAVNVVISVGMIVVNLVGIMHLWNISLNA-VSVVNLVMAKGISIEFCSHINAQFSTSK-HFSRNHRAKEALGGMGSSVF 1151 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHhhhHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHH
Confidence 446667778888999999999999999998 7888878888999999999999998653 45789999999999999999
Q ss_pred HH-HHHHHHHHHhhccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 014915 105 LA-SLSEFLAFAVGSFIPMPACRVFSMFAALA-VLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~t-slT~~~~F~~g~~s~ipav~~F~i~aa~~-vl~~fl~~lt~f~alL~ 152 (416)
.. ++|+++||+.+++++...++.|-.-+-++ |++..+-.+.|+|.+|.
T Consensus 1152 ~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS 1201 (1204)
T TIGR00917 1152 SGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLS 1201 (1204)
T ss_pred HHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 68999999999999999999876555553 47788889999998874
No 46
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=98.54 E-value=4.2e-07 Score=100.55 Aligned_cols=129 Identities=13% Similarity=0.217 Sum_probs=111.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHHHhh
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (416)
++..|+.+++..+.=++.++|++.++|.+++. ...+.-..++|++++|.+++.+++++.. ++.+.++.+..++.++
T Consensus 694 ~~~fa~~avial~hDv~i~~g~~~l~g~~ls~-~~iaglLtliGysvndtIVi~DRIrE~~~~~~~~~~~~~~~~si~~t 772 (855)
T PRK14726 694 EWQFAVGAIIATLHDVILTLGLFVLTGIEFNL-TSIAAILTIVGYSLNDTVVVYDRVRENLRRYKKMPLPILIDASINQT 772 (855)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEehHHHHHHhhccCCCHHHHHHHHHHHH
Confidence 34458899999999999999999999999997 7777777889999999999999998653 3456666677777777
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 100 g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
..-++.|++|++++++..++...+.++.|++...+|+++..+.++.+-++++.
T Consensus 773 l~Rii~TslTTll~llpL~l~G~~~i~~fai~li~Gli~gt~sSifvAspll~ 825 (855)
T PRK14726 773 LSRTVLTSATTLLALLALYLFGGEVIRSFTFAMLFGVAVGTFSSIYIAAPVLI 825 (855)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999988788999999999999999999999988888763
No 47
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.48 E-value=6.5e-07 Score=102.58 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
++..++++-++++.++..+.++|.+++. +..+-..+++||.|||++++++.+++. .++.+.++++.++.++...||++
T Consensus 905 ~lii~~~iPl~~~g~~~~l~~~g~~l~~-~s~~G~i~l~GivV~naIvlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~ 983 (1051)
T TIGR00914 905 ALLVFTGIPFALTGGVFALWLRGIPLSI-SAAVGFIALSGVAVLNGLVMISFIRKLLEEGPSLDEAVYEGALTRVRPVLM 983 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHH
Confidence 4555566667777777777889999997 777778888999999999999998865 45788999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 106 tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
|++|+++||+-.++.+ -+..+.+++..+.|+++..++.+++.|+++.
T Consensus 984 ttltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP~l~~ 1033 (1051)
T TIGR00914 984 TALVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLPALYR 1033 (1051)
T ss_pred HHHHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHHHHHH
Confidence 9999999999987753 4557789999999999999999999999874
No 48
>COG4258 Predicted exporter [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=90.86 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t 106 (416)
++-.++-+++++.+.+..+.+.|+|+|. .+-+.-.|++|+|++|...+-++= .+..|... +-.++.+.
T Consensus 672 glrvllP~v~a~~~~~A~~a~aGvplnL-fhllal~LvlgvG~nYalFfs~~~------~~~ae~lt-----tl~alala 739 (788)
T COG4258 672 GLRVLLPSVLALGCGLAVLAMAGVPLNL-FHLLALVLVLGVGINYALFFSNAG------DPRAEPLT-----TLLALALA 739 (788)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHcccchhhhhhccc------CCCCchHH-----HHHHHHHH
Confidence 5556677789999999999999999997 888888999999999998875432 11222222 55678999
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 014915 107 SLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTA 146 (416)
Q Consensus 107 slT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~ 146 (416)
++||.++|+...+|.+|.+++||+..+.||+.+|++.-..
T Consensus 740 ~ltTlltfgLLa~Sa~pvLssfG~tlasGiila~vlApL~ 779 (788)
T COG4258 740 MLTTLLTFGLLAFSATPVLSSFGITLASGIILAFVLAPLA 779 (788)
T ss_pred HHHHHHHHHHHHhcccHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999987653
No 49
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=98.27 E-value=3.4e-06 Score=96.54 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si~ 104 (416)
++.-++++-+|++.++..+.++|.+++. +..+--.+++||-|||+++++...++. .++.+..+++.++.++-..||+
T Consensus 898 pliI~~~IPls~~Ga~~~l~~~g~~l~~-~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIl 976 (1049)
T PRK15127 898 PFSVMLVVPLGVIGALLAATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPIL 976 (1049)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHH
Confidence 4555666778888888888899999996 666767788899999999999988754 3478899999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
+|++|+++||+-.++.. -+..+-+++....|+++..++++++.|++...
T Consensus 977 mTtlTti~gllPl~l~~G~g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~ 1028 (1049)
T PRK15127 977 MTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVV 1028 (1049)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988763 35567799999999999999999999998753
No 50
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.25 E-value=2.8e-07 Score=101.14 Aligned_cols=130 Identities=20% Similarity=0.339 Sum_probs=114.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHh-hcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-----------------
Q 014915 22 SKVLLGLSGVILVMLSVLGSVGFFSA-IGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP----------------- 83 (416)
Q Consensus 22 sk~~l~l~gv~~v~~sv~~s~Gl~~~-~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~----------------- 83 (416)
+.++..+++++.++++...++++++. +|+.+-+.+..+.-++++|||.||+|++..+|+|..
T Consensus 347 ~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l 426 (999)
T KOG3664|consen 347 GSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLEL 426 (999)
T ss_pred CcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhccccccc
Confidence 46688999999999999999999874 788888878888889999999999999999994410
Q ss_pred --CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 84 --MELVLETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 84 --~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
..+..++++...+.+...+|++|++|++.+|+....++.+.+|.|+++|+..+.+++..+++++||..
T Consensus 427 ~~~~~ll~~~~~l~~~h~~~smfvt~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~ 496 (999)
T KOG3664|consen 427 SDHTELLENVFALTLRHASFSMFVTSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASV 496 (999)
T ss_pred ccchhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchh
Confidence 12335677888999999999999999999999999999999999999999999999999999999933
No 51
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.21 E-value=1.2e-05 Score=82.80 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014915 35 MLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAF 114 (416)
Q Consensus 35 ~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F 114 (416)
.+.++..+|++.++|.+++. ...+--.+.+|++||+.+++..+.++... .+.++++...++++..+++.+++|+++++
T Consensus 296 ~~~v~~~lg~l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~ 373 (417)
T PRK08343 296 LSEVIIILGFAALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAM 373 (417)
T ss_pred HHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999997 77777788899999999999877655432 36778888999999999999999999999
Q ss_pred HhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 115 AVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 115 ~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
+...+.....+|.|++...+|+++..+++=-+|.-++
T Consensus 374 lpL~~~g~g~ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 374 SPLAVMGLGDLKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888766677999999999999997766665555544
No 52
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=98.18 E-value=1.3e-05 Score=91.95 Aligned_cols=126 Identities=13% Similarity=0.064 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~si~~ 105 (416)
++.-++++-+|++-++-.+.++|.+++. +..+--.+++||-|+|++++++..++.. ++.+..+++.++.++-..||++
T Consensus 897 pliI~~~iPlsl~G~~~~l~~~g~~l~~-~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlm 975 (1044)
T TIGR00915 897 PVSVMLVVPLGIIGALLATSLRGLSNDV-YFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILM 975 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHH
Confidence 4555556667777777777789999997 7777777888999999999999988654 4688999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 106 tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
|++|+++||+-.++.. -+..+-+++....|+++..++++++.|++...
T Consensus 976 Ttltti~gllPla~~~g~g~~~~~plai~vigGL~~st~ltL~vvP~ly~~ 1026 (1044)
T TIGR00915 976 TSLAFILGVVPLAISTGAGSGSQHAIGTGVFGGMVTATVLAIFFVPLFYVV 1026 (1044)
T ss_pred HHHHHHHHHHHHHHhcCCChHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988753 34578889999999999999999999998753
No 53
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=98.14 E-value=1e-05 Score=89.92 Aligned_cols=116 Identities=22% Similarity=0.272 Sum_probs=103.2
Q ss_pred HHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccC
Q 014915 41 SVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFAVGSFI 120 (416)
Q Consensus 41 s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s 120 (416)
.+|.+++-|+++++ ++++.-.+-+|-.||..-|+.-+|.+.+...++++|+..+++.+|.|++-++++|++|.+.+++.
T Consensus 718 V~G~lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V 796 (868)
T KOG1934|consen 718 VFGFLSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFV 796 (868)
T ss_pred HhhhhHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhc
Confidence 46888889999999 77777666677778999999888876665468999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014915 121 PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI 157 (416)
Q Consensus 121 ~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p~ 157 (416)
+...++.|.-..-+.+.+.++--+.++|.+|..+.+.
T Consensus 797 ~sYmv~vF~KTv~LVv~~GllHGLv~LPviLs~f~~~ 833 (868)
T KOG1934|consen 797 PSYMVQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPI 833 (868)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999765543
No 54
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.10 E-value=2e-05 Score=77.82 Aligned_cols=133 Identities=11% Similarity=0.213 Sum_probs=111.2
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHH
Q 014915 20 VSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNAL 96 (416)
Q Consensus 20 v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l 96 (416)
+|=+.-.|++++++.+-=++.++|+++++|+++++ ...+.-.-++|=.++|.+++.++.|+.. +..+..|.+-.++
T Consensus 153 ~RFe~~~a~aaI~al~hDvii~~g~~slfgiE~~l-~~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si 231 (305)
T COG0341 153 FRFEWRFALAAILALLHDVIITLGFFSLFGIEFNL-ATIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSI 231 (305)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHHHhheeecH-HHHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHH
Confidence 34455559999999999999999999999999998 6666666777889999999999998753 3566778888899
Q ss_pred HhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 97 VEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 97 ~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
.++-.-...|++|+.++.+...+-.=+.+++|++..-+|++.+..-++.+=++++..
T Consensus 232 ~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~llvGii~gtySSifiA~pll~~ 288 (305)
T COG0341 232 NQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALLVGIIAGTYSSIFIAAPLLLL 288 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999988999999999987777655559999999999999999998888777777743
No 55
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=98.09 E-value=2.2e-05 Score=89.90 Aligned_cols=126 Identities=13% Similarity=0.056 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
.+.-++++-+|++-++..+.++|.+++. +..+--.+++||-|+|+++++...++. .++.+..+++.++-++-..||++
T Consensus 896 pliI~~~IPlal~G~l~~L~i~g~~l~~-~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlm 974 (1037)
T PRK10555 896 PFSVMLVVPLGVIGALLATWMRGLENDV-YFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILM 974 (1037)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHH
Confidence 4555556667777787778889999996 777777788899999999999888754 45788999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 106 tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
|++|+++||+-.++.. -+..+-+++....|+++..++++++.|++...
T Consensus 975 Ttltti~gllPlal~~g~g~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~ 1025 (1037)
T PRK10555 975 TSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVL 1025 (1037)
T ss_pred HHHHHHHHHHHHHHhcCCChHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987752 35678899999999999999999999998753
No 56
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=98.09 E-value=1.7e-05 Score=90.93 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhh--ccCCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR--QPMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~--~~~~~~~~~ri~~~l~~~g~si~ 104 (416)
.+.-++++-+|++-++..+.++|.+++. +..+--.+++||-|||+++++...++ ..++.++.|++.++-++-..||+
T Consensus 891 pliI~~tIPls~~G~~~~l~l~g~~l~~-~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIl 969 (1040)
T PRK10503 891 PITILSTLPTAGVGALLALMIAGSELDV-IAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPIL 969 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHH
Confidence 4444555666666666667789999997 77777788889999999999987653 34678999999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
+|++|+++||+-.++.+ -+..+-+++....|+++..++++++.|++...
T Consensus 970 mTtltti~gllPlal~~G~g~e~~~pla~~ii~GL~~St~ltL~vvP~ly~~ 1021 (1040)
T PRK10503 970 MTTLAALLGALPLMLSTGVGAELRRPLGICMVGGLIVSQVLTLFTTPVIYLL 1021 (1040)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987753 34578899999999999999999999998743
No 57
>COG4258 Predicted exporter [General function prediction only]
Probab=98.04 E-value=8.3e-05 Score=77.87 Aligned_cols=177 Identities=19% Similarity=0.184 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHH
Q 014915 28 LSGVILVMLSVLGSVGF-FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (416)
Q Consensus 28 l~gv~~v~~sv~~s~Gl-~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t 106 (416)
+.|+++++++.++++-- +..|| ++.. ++.+.-+-++|+.+||.+++....++-....++- +..+|.-|.+++.
T Consensus 284 lLgvls~gig~laglvAt~laFg-~lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~----rsaaev~paL~la 357 (788)
T COG4258 284 LLGVLSIGIGALAGLVATLLAFG-ELHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPW----RSAAEVRPALLLA 357 (788)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHh-hHhH-HHHHhhhhheeecccceeeehhhccCCCCCCChh----HHHHHhhHHHHHH
Confidence 45555555555555432 23344 3333 5666667788999999988755333221112322 3478899999999
Q ss_pred HHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hccccc-----cccchhhhHHH
Q 014915 107 SLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEV-----------HAPILG-----LWGVKMVVVSV 170 (416)
Q Consensus 107 slT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~-----------~~p~l~-----~~~~k~~v~~~ 170 (416)
-+|++++|....+++.|.+|..++|+.+|+..+++....+.|.+..- -+.++. +|..+ .+.+
T Consensus 358 llTtvlayatmlfs~fpgLrQLa~faivGL~aAaltvrfllP~L~~~a~~rpv~~~arlarwlaa~~~~~w~la--~llV 435 (788)
T COG4258 358 LLTTVLAYATMLFSPFPGLRQLAIFAIVGLLAAALTVRFLLPWLCRGAPVRPVPAMARLARWLAAWRRNKWLLA--GLLV 435 (788)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHhcccccchhh--hHHH
Confidence 99999999999999999999999999999999999999888888721 111221 12111 1222
Q ss_pred HHHHHHHHHHHhhhccccccccccCCCCchhhhhHHHHhhhc
Q 014915 171 FLAFTVASIALSTRIEAGLEQQIVLPRDSYLQGYFDNTTEYL 212 (416)
Q Consensus 171 f~~~~~~si~g~~~i~~gld~~~~lp~dS~~~~~~~~~~~~f 212 (416)
.+.+...-.-|....+++.|...+-|-+-.+..--+.+....
T Consensus 436 al~~a~~llpg~~w~~~dddis~L~pvpaa~~aqe~~ira~~ 477 (788)
T COG4258 436 ALALASLLLPGMSWLRVDDDISQLQPVPAAILAQEKAIRALT 477 (788)
T ss_pred HHHHHHhhCCchhhccCcchHHhcCCCcHHHHHHHHHHHHHh
Confidence 222223335577778888888888777655443333344333
No 58
>PRK09579 multidrug efflux protein; Reviewed
Probab=98.00 E-value=1.7e-05 Score=90.69 Aligned_cols=125 Identities=9% Similarity=0.011 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc--CCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g~si~ 104 (416)
.+.-++++-+|++-++..+.++|.+++. +..+--.+++||-|+|++++++.+++.+ ++.+.++++.++-++-..||+
T Consensus 871 pliI~~~iPla~~G~~~~L~i~~~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIl 949 (1017)
T PRK09579 871 PLVILVTVPLSICGALIPLFLGVSSMNI-YTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVL 949 (1017)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHH
Confidence 3444455556666666556778999996 6777777888999999999999887543 478899999999999999999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
+|++|+++||+-.++.. -+..+-+++....|+++..++++++.|++..
T Consensus 950 mTtlTti~gllPla~~~g~g~~~~~plA~~iigGL~~st~ltL~~iP~ly~ 1000 (1017)
T PRK09579 950 MTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYT 1000 (1017)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHhCCceeeeehHHHHHHHHHHHHHHHHHH
Confidence 99999999999987653 2445568888899999999999999999874
No 59
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=97.95 E-value=0.0001 Score=84.51 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc--CCCCHHHHHHHHHHhhhhHHHHHH
Q 014915 30 GVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPSITLAS 107 (416)
Q Consensus 30 gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g~si~~ts 107 (416)
-++++-+|++-++-.+.++|.+++. ...+--.+++||-|.|++++++.+++.. ++.+.+|++.++-++=..||++|+
T Consensus 892 Im~~IPla~~G~~~~l~i~g~~l~~-~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTt 970 (1021)
T PF00873_consen 892 IMLTIPLALIGVLLGLFITGQPLSF-MSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILMTT 970 (1021)
T ss_dssp HHTTHHHHHHHHHHHHHHTTBEBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccchhhHHHHHHHhhccccccc-cceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555455788999997 7777777888999999999999988764 477899999999999999999999
Q ss_pred HHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 108 LSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 108 lT~~~~F~~g~~s~i---pav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
+||++|++-.++..- +-.+-.++....|+++..++++.+.|++.
T Consensus 971 lTti~G~lPla~~~g~g~~~~~pla~~iigGL~~stllTL~vvP~ly 1017 (1021)
T PF00873_consen 971 LTTILGMLPLALGIGEGAEFWQPLAIVIIGGLLFSTLLTLIVVPVLY 1017 (1021)
T ss_dssp HHHHHHHHHHHTT-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccCCCccccCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888653 55688999999999999999999999875
No 60
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.93 E-value=5.3e-05 Score=83.22 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=109.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHHHHHhh
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISNALVEV 99 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~~l~~~ 99 (416)
+.-.|+.+++..+-=++.++|+++++|++++. .....-..++|-+++|.+++..+.|+.. ++.+.+|.+-.++.++
T Consensus 600 ~~~fav~AviALiHDvlivlg~fsl~~~e~~l-~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~~~~~~eivn~SInqT 678 (758)
T PRK13023 600 RWQLALGAVLSTLHDVVILSGMFIVFRMEFNL-WSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQT 678 (758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCceecH-HHHHHHHHHHhhcccCeEEEeHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 34458888888888999999999999999998 6666666788999999999999998863 3467888888999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 100 g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
-.-...||+||.++.++..+-.-+.+|.|++-..+||++...-++..=.+++
T Consensus 679 l~RTI~TS~TTll~~l~L~ifGg~~i~~Fal~lliGiv~GtySSIfIAspl~ 730 (758)
T PRK13023 679 LSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLL 730 (758)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8889999999999999988888899999999999999998887776555554
No 61
>PRK09577 multidrug efflux protein; Reviewed
Probab=97.91 E-value=5.9e-05 Score=86.43 Aligned_cols=127 Identities=17% Similarity=0.098 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~~ 105 (416)
.+.-++++-++++-++..+.++|.+++. ...+--.+++||-|+|+++++...++. .++.+..|++.++-++-..||++
T Consensus 892 plii~~~iPl~l~G~~~~l~l~g~~l~~-~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlm 970 (1032)
T PRK09577 892 PFAVMLVVPLGVIGAVLGVTLRGMPNDI-YFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVM 970 (1032)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHH
Confidence 4555556666666666666788999996 666666788899999999999888754 45788999999999999999999
Q ss_pred HHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014915 106 ASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (416)
Q Consensus 106 tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~ 154 (416)
|++|+++|++-.++.. -+..+-.++...-|+++..++++.+.|++...+
T Consensus 971 Ttltti~gllPla~~~g~g~~~~~pla~~iigGL~~sT~lTL~vvP~ly~l~ 1022 (1032)
T PRK09577 971 TSLAFGVGVLPLAFASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVV 1022 (1032)
T ss_pred HHHHHHHHHHHHHHccCCChHHhcCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988753 344566888899999999999999999987543
No 62
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=97.89 E-value=8.3e-05 Score=78.40 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHH
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSI 103 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si 103 (416)
..|+.+.+..++.++..+|+++++|.++++ .-..--.|.+|.+||.-+++..+.+++ +.+.+..+++...++++...|
T Consensus 366 ~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNVlI~ERIrEElr~G~s~~~ai~~G~~rAf~tI 444 (506)
T COG0342 366 LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANVLIFERIREELRNGKSVLSAIDAGFKRAFSTI 444 (506)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccEEeeHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 567888888888999999999999999998 666666788899999988898988876 457899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014915 104 TLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (416)
Q Consensus 104 ~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~ 154 (416)
+=+.+||.++=.++..-..-+||-|++..++||+...+..+++.-.+++.+
T Consensus 445 ~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~~~ 495 (506)
T COG0342 445 LDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLNLL 495 (506)
T ss_pred HHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999988888888999999999999999999999988777776544
No 63
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=97.77 E-value=0.00013 Score=82.85 Aligned_cols=128 Identities=13% Similarity=0.182 Sum_probs=105.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-----cCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc---CCCCHHHHHHH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAI-----GVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP---MELVLETRISN 94 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~-----G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~---~~~~~~~ri~~ 94 (416)
++-.|+++++..+-=++.++|+++++ |++++. .....-.-++|-+++|.+++..+.|+.. +..+.++-+-+
T Consensus 1256 EW~FAvgAVIALlHDVLItLGifsl~~f~lfgiEfdl-tfIAALLTIIGYSINDTIVVFDRIRENlr~~~~~~l~eIIN~ 1334 (1403)
T PRK12911 1256 EWRYAFSAICALIHDLLATCAVLVALHFFLQKIQIDL-QAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFTPMPILIND 1334 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeEEcH-HHHHHHHHHhhccccCeEEEeHHHHHHHhhccCCCHHHHHHH
Confidence 44568888888888888888887765 999998 5555556778899999999999988763 34577788888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 95 ALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 95 ~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
++.++-.-.+.||+||.++.++..+-.-+.++.|++...+||++...-++..-++++
T Consensus 1335 SINQTLsRTI~TSlTTLLallaLllFGG~sI~~FAlALLIGIIvGTYSSIFIASPLl 1391 (1403)
T PRK12911 1335 ALQKTLGRTVMTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLL 1391 (1403)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999988888899999999999999999888886656655
No 64
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=97.74 E-value=0.00019 Score=82.33 Aligned_cols=126 Identities=10% Similarity=0.047 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc-cC-CCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ-PM-ELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~-~~-~~~~~~ri~~~l~~~g~si~ 104 (416)
.+.-++++-+|++-++..+.++|.+++. +..+--.+++||-++|+++++....+. .+ +.+..+++.++-++-..||+
T Consensus 877 pliI~~tIPlal~G~~~~L~l~g~~l~~-~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIl 955 (1025)
T PRK10614 877 PLTILSTLPSAGVGALLALELFNAPFSL-IALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIM 955 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHH
Confidence 3444455666777777667788999996 777777788899999999999887653 33 67899999999988889999
Q ss_pred HHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 105 LASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
+|++|+++|++-.++.. -+..+-+++....|+++..++++++.|++...
T Consensus 956 mTtlTti~GllPlal~~g~g~~~~~pmAi~iigGL~~sT~ltL~vvP~lY~~ 1007 (1025)
T PRK10614 956 MTTLAALFGALPLVLSGGDGAELRQPLGITIVGGLVMSQLLTLYTTPVVYLF 1007 (1025)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHhCCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988753 24578899999999999999999999998754
No 65
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00056 Score=75.14 Aligned_cols=159 Identities=22% Similarity=0.211 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHH-HHHhhccC----CCCHHHHHHHHHHhhhh
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV-NAVKRQPM----ELVLETRISNALVEVGP 101 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~-~~~~~~~~----~~~~~~ri~~~l~~~g~ 101 (416)
++.-+++.-+|++.+|-+|..+|++.|. ++.----+-+|+=||.+++++ |+|++..+ +..+-+.+.++.+++++
T Consensus 361 Ali~~~~lPLS~li~f~~M~~~gi~~Nl-MSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~ 439 (1027)
T COG3696 361 ALIVIISLPLSLLIAFIVMNFFGISANL-MSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGR 439 (1027)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchh-hcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhh
Confidence 5666777789999999999999999997 333222233444478887665 66776542 34556678889999999
Q ss_pred HHHHHHHHHHHHHHhh-ccCChhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------hhcccc
Q 014915 102 SITLASLSEFLAFAVG-SFIPMPA--CRVFSMFAALAVLLDFFLQVTAFVALIE--------------------VHAPIL 158 (416)
Q Consensus 102 si~~tslT~~~~F~~g-~~s~ipa--v~~F~i~aa~~vl~~fl~~lt~f~alL~--------------------~~~p~l 158 (416)
|+++..+.-.+.|+-. +++.+.. .+=.+..-.++++.+.++++|+.|++.. .|.|.|
T Consensus 440 ~v~f~~lII~vvf~PIFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~r~~~r~Y~plL 519 (1027)
T COG3696 440 PVFFGLLIITVVFLPIFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLMRFLIRVYAPLL 519 (1027)
T ss_pred hHhhhhhhheeehhhhheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 9999998877777753 2332221 1223444556667778889999999872 355544
Q ss_pred ccc-cchhhhHHHHHHHHHHHHHHhhhcc
Q 014915 159 GLW-GVKMVVVSVFLAFTVASIALSTRIE 186 (416)
Q Consensus 159 ~~~-~~k~~v~~~f~~~~~~si~g~~~i~ 186 (416)
... ..+..++++.++.++++.+..+++-
T Consensus 520 ~~~l~~p~~vl~~A~~~~~~s~~l~~~lG 548 (1027)
T COG3696 520 EFVLKLPKLVLLGAVLSLVASLVLLPKLG 548 (1027)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHhcc
Confidence 321 1133455566666667777665543
No 66
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=97.15 E-value=0.0037 Score=71.15 Aligned_cols=128 Identities=22% Similarity=0.198 Sum_probs=102.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-----hcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSA-----IGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALV 97 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~-----~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~ 97 (416)
+.+.+...+.++.++..+++|+-.+ .|.++....-...-.+++++|.|+...++++++++......++ +.++++
T Consensus 780 s~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g~~~~-ii~a~~ 858 (937)
T COG2409 780 SVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAGLRTG-IIRAMR 858 (937)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhccccchh-hhhhhc
Confidence 4445556666778888888887433 5666554222222336788999999999999998865444555 999999
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 98 EVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 98 ~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
..|.-++-..+.-+.+|+....+++..+++-|.-.++|++++-++.-+++++-+
T Consensus 859 ~tg~Vit~ag~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~ 912 (937)
T COG2409 859 GTGGVITAAGLIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAI 912 (937)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999998888765
No 67
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=97.04 E-value=0.006 Score=66.43 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=106.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhH
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPS 102 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~s 102 (416)
.+|-+.+-+.++.+..+.-+|+|+..|+++++ +-.|+-...+|||+.-..|..-.|--.- .++.+|...++.+...+
T Consensus 941 npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~-i~aViLi~sVGigveFtvhv~l~FlTs~--G~rs~R~s~al~~~F~P 1017 (1143)
T KOG1935|consen 941 NPWAAGLIVCSLAIMTVELFGFMGLLGIKLSA-IPAVILIASVGIGVEFTVHVALGFLTAL--GTRSQRASSALQHMFVP 1017 (1143)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhceeecc-chhHHHHHHhhhchhhhHHHHHHHHHhh--ccchhHhHHhhhhcchh
Confidence 44556666666666677778999999999999 7888888889999998888887776332 45678899999999999
Q ss_pred HHHHHHHHHHHHHhhccCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014915 103 ITLASLSEFLAFAVGSFIPMP-ACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI 157 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ip-av~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p~ 157 (416)
...-++++.++-+.++.++.. .||.|+....+-+.+..+-.+..+|-+|....|-
T Consensus 1018 v~hG~lST~lgv~MLs~S~FdFvVryFf~~ltvl~~lGv~ngL~~lPVlLS~~GP~ 1073 (1143)
T KOG1935|consen 1018 VSHGALSTLLGVLMLSFSEFDFVVRYFFAVLTVLTCLGVLNGLVVLPVLLSLVGPK 1073 (1143)
T ss_pred hhhhHHHHHhhHheeccCchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHhcCCC
Confidence 999999999998888887765 4599998888888888888888888887655543
No 68
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=95.13 E-value=0.022 Score=65.11 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhhhhHHHHH
Q 014915 28 LSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSITLA 106 (416)
Q Consensus 28 l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~si~~t 106 (416)
+.-++++-++++-++.-+.+.|.+++. ...+--.+++|+-+.|+++++...++.. ++.++.|++-++-+.=..||++|
T Consensus 877 ~~Il~tvPla~iGa~~~L~l~g~~~~i-~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMT 955 (1009)
T COG0841 877 FIVMLTVPLGLLGALLALLLTGLPLDV-YAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMT 955 (1009)
T ss_pred hHHHhhhhHHHHHHHHHHHHhCCCCcH-HHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHH
Confidence 444555566777777777789999996 7777778889999999999998876653 58899999999999999999999
Q ss_pred HHHHHHHHHhhccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 107 SLSEFLAFAVGSFIPMP---ACRVFSMFAALAVLLDFFLQVTAFVALI 151 (416)
Q Consensus 107 slT~~~~F~~g~~s~ip---av~~F~i~aa~~vl~~fl~~lt~f~alL 151 (416)
+++.++|.+-.++..-. .-+..|+..--|+++.-++++.+.|.+.
T Consensus 956 tla~ilG~iPLal~~g~Ga~~r~~lgi~vigGl~~sT~LtL~~vPv~Y 1003 (1009)
T COG0841 956 SLAAILGVLPLALSTGAGAESRQPLGIAVVGGLLVATVLTLFVVPVFY 1003 (1009)
T ss_pred HHHHHHhhhhhhhcccccccccCcceEEEechhHHHHHHHHhhhhhhh
Confidence 99999998876654433 3344555666677888888888777764
No 69
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=90.38 E-value=0.96 Score=50.63 Aligned_cols=126 Identities=15% Similarity=0.180 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHh-hHHhhchhHHHHHHHHhhc-cCCCCHHHHHHHHHHhhhhHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL-VLAVGVDNMCILVNAVKRQ-PMELVLETRISNALVEVGPSIT 104 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfL-vl~IGvd~~f~l~~~~~~~-~~~~~~~~ri~~~l~~~g~si~ 104 (416)
++.-+..+-+|++-++-.+.+.|.+++. ..+++|+ +.|+.+.|.++|+..+++. .++.+.+|++.+.=.+--.|++
T Consensus 888 alli~~~lP~Al~GGv~~l~l~G~~lSv--as~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~l 965 (1027)
T COG3696 888 ALLIFSNLPFALIGGVIALALRGFNLSV--AAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKL 965 (1027)
T ss_pred hHHHHhcCcHHHhhhHHHhhhcCceEee--hhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHH
Confidence 3344444445666666566778888884 5555554 5679999999999988775 3567899999885445555699
Q ss_pred HHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014915 105 LASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (416)
Q Consensus 105 ~tslT~~~~F~~g~~s---~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~ 154 (416)
+|+++.++|+.-.+++ .-...|-.++-.--|++-.-++++...|++.+.+
T Consensus 966 MTa~~~~lGlvPi~~~~g~GsEV~~plA~vviGGl~tst~LtL~vlPaly~~~ 1018 (1027)
T COG3696 966 MTALVILLGLLPILWATGAGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALF 1018 (1027)
T ss_pred HHHHHHHHhhhhhhhhcCCchHhhccchheeEcceeHHHHHHHHHHHHHHHHH
Confidence 9999999998876653 4455666666666677788888888999987544
No 70
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=68.75 E-value=0.58 Score=54.04 Aligned_cols=118 Identities=16% Similarity=0.221 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHH-HHHHHH
Q 014915 34 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA-SLSEFL 112 (416)
Q Consensus 34 v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t-slT~~~ 112 (416)
..+.++--+|+|...|+++|. ...+--..-+||+|+...||++++..... .+..+|..+++...|.+++-- ++|...
T Consensus 1054 ~~~~~v~l~g~m~~~~I~~Na-vS~vNlvm~vgi~vef~~hi~~sf~~s~~-~~~~~ra~~~l~s~Gs~v~sgitlt~~~ 1131 (1201)
T KOG1933|consen 1054 DEMILVNLVGFMYLWGISLNA-VSLVNLVMSVGIAVEFCVHITHSFATSSG-PDATERAEEALNSIGSSVFSGITLTKFG 1131 (1201)
T ss_pred hhhhhhhHHHHHHhhceeehh-hhhhhhhhhcchhhhHHHHhhcceeeccC-CchhHHHHHHHhccCcceecceeehhcC
Confidence 344555667999999999998 56655666778999999999999876543 378999999999999876533 345555
Q ss_pred HHHhhccCChhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014915 113 AFAVGSFIPMPACR--VFSMFAALAVLLDFFLQVTAFVALIEVH 154 (416)
Q Consensus 113 ~F~~g~~s~ipav~--~F~i~aa~~vl~~fl~~lt~f~alL~~~ 154 (416)
+-.+.++.+...++ .|.++.+..++-+ +.-+.|+|.+|...
T Consensus 1132 ~~~vl~fa~s~i~~~~~f~~~l~~~l~~a-~hGliflpvlls~~ 1174 (1201)
T KOG1933|consen 1132 GIIVLSFAKSQIFQVFYFRMYLGIVLVGA-LHGLIFLPVLLSLL 1174 (1201)
T ss_pred ceEEEeeccccEEEEEeehHHHHHHHHHh-eeeeeehhhHHHhc
Confidence 55555555555544 4555555544433 23355555555433
No 71
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=61.28 E-value=99 Score=26.00 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=11.9
Q ss_pred CChhhHHHHHHHHHHHHHHH
Q 014915 120 IPMPACRVFSMFAALAVLLD 139 (416)
Q Consensus 120 s~ipav~~F~i~aa~~vl~~ 139 (416)
.+.|..+..+...+.++.+.
T Consensus 88 ~~~p~~~~a~~~l~~~~~~~ 107 (111)
T PF09946_consen 88 NSYPEYTDAGFVLAFSLAFM 107 (111)
T ss_pred ccChhHhHHHHHHHHHHHHH
Confidence 36777777666655555443
No 72
>PF14402 7TM_transglut: 7 transmembrane helices usually fused to an inactive transglutaminase
Probab=60.44 E-value=41 Score=33.47 Aligned_cols=69 Identities=25% Similarity=0.488 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHH
Q 014915 28 LSGVILVMLSVLGSVGFFS-AIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLA 106 (416)
Q Consensus 28 l~gv~~v~~sv~~s~Gl~~-~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~t 106 (416)
+..++++++.++.++++.+ .+|+.-.. .+...|.++++.-++.+-++ |+++.+ ++++.+.+-|.+.+
T Consensus 194 isaVli~VI~ii~~~sv~~~klGl~~gl-sVtfFPmIILawTIERmSil---WEEeG~--------~ev~~qg~GSLlvA 261 (313)
T PF14402_consen 194 ISAVLIVVILIIAAFSVLSYKLGLEEGL-SVTFFPMIILAWTIERMSIL---WEEEGA--------KEVLKQGGGSLLVA 261 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCC-eeehHHHHHHHHHHHHHHhh---hhhcCc--------HHHHHHhhhHHHHH
Confidence 4456666666666666665 47888886 78899999999999877666 443322 25555666655554
Q ss_pred HH
Q 014915 107 SL 108 (416)
Q Consensus 107 sl 108 (416)
.+
T Consensus 262 vl 263 (313)
T PF14402_consen 262 VL 263 (313)
T ss_pred HH
Confidence 43
No 73
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=56.83 E-value=10 Score=31.62 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.5
Q ss_pred ChhhHHhhhhHhhhcCCC
Q 014915 336 STEQFREKLPWFLNALPS 353 (416)
Q Consensus 336 ~~~~F~~~L~~FL~~~P~ 353 (416)
+=++|.+.|..||.+.|-
T Consensus 102 tfksFk~nLK~FLf~Ipf 119 (121)
T smart00040 102 TFKSFKENLKDFLFDIPF 119 (121)
T ss_pred eHHHHHHHHHHHHhcCCC
Confidence 558899999999999874
No 74
>cd00040 CSF2 Granulocyte Macrophage Colony Stimulating Factor (GM-CSF) is a member of the large family of polypeptide growth factors called cytokines. It stimulates a wide variety of hematopoietic and nonhematopoietic cell types via binding to members of the cytokine receptor family, mainly the GM-CSF receptor.
Probab=56.43 E-value=10 Score=31.78 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.5
Q ss_pred ChhhHHhhhhHhhhcCCC
Q 014915 336 STEQFREKLPWFLNALPS 353 (416)
Q Consensus 336 ~~~~F~~~L~~FL~~~P~ 353 (416)
+=++|.++|..||.+.|-
T Consensus 102 TFksFkenLK~FLf~IPf 119 (121)
T cd00040 102 TFKSFKENLKDFLFDIPF 119 (121)
T ss_pred eHHHHHHHHHHHHhcCCC
Confidence 568899999999998874
No 75
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.75 E-value=1.5e+02 Score=35.24 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=39.6
Q ss_pred CcEEEEEecCCCCchhhhhhhhhccccCCcchHHHHHHHhhcCCCCc-cccCC-----CCchHHHHHhhcCC
Q 014915 216 PPLYFVVKDYNYSSESRHTNQLCSISQCDSNSLLNEISRASSIPELS-YIAKP-----AASWLDDFLVWTSP 281 (416)
Q Consensus 216 ~pv~~vv~~~d~~~~~~~~~~~c~~~~c~~~sl~~~i~~~~~~~~~s-~~~~~-----~~~Wl~df~~~~~~ 281 (416)
.|-..|.+++++.-+..+.-++-|.+||.--.+...|++.-.-.+.. .+++. .-.||+.-+.-++.
T Consensus 1000 RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQ 1071 (1228)
T KOG0055|consen 1000 RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQ 1071 (1228)
T ss_pred CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceecc
Confidence 35555666666554333334556779999999999998774332211 12221 24788888776654
No 76
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=53.83 E-value=20 Score=38.79 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=23.6
Q ss_pred hhHhccccccceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 014915 6 SVALGDTPRFSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGV 50 (416)
Q Consensus 6 ~~~lg~~~~~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~ 50 (416)
.+|+++++..+....|--.+.++.+.+. +++++++++..+|.
T Consensus 343 L~AfaSyn~F~NNc~rDAll~S~in~~t---s~~sgfviFsvLg~ 384 (629)
T KOG3659|consen 343 LIAFASYNKFHNNCYRDALLTSIINCLT---SFLSGFVIFSVLGY 384 (629)
T ss_pred hhhhhhhcccccchhhhhHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4567777655555566666555555544 44555555555444
No 77
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=53.59 E-value=42 Score=27.85 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HhhcCcccchhhhHhhHhhHHh--hchhHHHHHH
Q 014915 26 LGLSGVILVMLSVLGSVGFF--SAIGVKSTLIIMEVIPFLVLAV--GVDNMCILVN 77 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~--~~~G~~~~~i~~~viPfLvl~I--Gvd~~f~l~~ 77 (416)
++++|.+..-+++..-+|++ -|++-.+..-..-.++||++|| |.-|+++.++
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~wi~ 97 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWHWVS 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555544444444444433 3555555432345566777765 5556666554
No 78
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=32.89 E-value=2.9e+02 Score=28.11 Aligned_cols=23 Identities=30% Similarity=0.740 Sum_probs=13.0
Q ss_pred ecchhHHHHHHHHHHHHHHHHHH
Q 014915 21 SSKVLLGLSGVILVMLSVLGSVG 43 (416)
Q Consensus 21 ~sk~~l~l~gv~~v~~sv~~s~G 43 (416)
-+|..||+=|++..+.++..-+|
T Consensus 158 ~~~~~lGvPG~~lLiy~i~~l~~ 180 (344)
T PF04123_consen 158 YRRTFLGVPGLILLIYAILALLG 180 (344)
T ss_pred hhceeecchHHHHHHHHHHHHHc
Confidence 35666766676655555444433
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.71 E-value=79 Score=28.67 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=12.1
Q ss_pred HHHHHHhhcCcccchhhhHhhHhhHHhh
Q 014915 41 SVGFFSAIGVKSTLIIMEVIPFLVLAVG 68 (416)
Q Consensus 41 s~Gl~~~~G~~~~~i~~~viPfLvl~IG 68 (416)
+++.+.+++.++.+.....+...++|+|
T Consensus 22 gI~~Lv~~~~~l~~~~s~~lg~~~lAlg 49 (191)
T PF04156_consen 22 GIAALVLFISGLGALISFILGIALLALG 49 (191)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333344444444433444444444444
No 80
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=30.31 E-value=1.1e+02 Score=27.89 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=29.2
Q ss_pred cceeeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhh
Q 014915 15 FSSFYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKR 81 (416)
Q Consensus 15 ~~~~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~ 81 (416)
+-+++|+||.-+| +.+.+++-++..+++. ...+.....+.++-.+++.+.+-|.+++....++
T Consensus 66 ~vRD~VDsR~~i~--e~fmP~alv~lv~~~v--~~~~~~~~~~~~~~~~~~~~~iid~~~l~r~vkk 128 (170)
T PF11241_consen 66 YVRDYVDSRRNIG--EFFMPVALVLLVLSFV--VPSPQVQLYVTLAMYVLLLLVIIDGVILGRRVKK 128 (170)
T ss_pred hhhhhhhcccchH--HHHHHHHHHHHHHHHH--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999544 4333333333333322 1112221122222233334455567777665544
No 81
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=29.85 E-value=4.8e+02 Score=25.88 Aligned_cols=105 Identities=19% Similarity=0.161 Sum_probs=61.3
Q ss_pred eecchhHHHHHHHHHHHHHH----HHHHHHHhhcCcccchhhhHhhHhhHHhhchhHH---HHHHHHhhccCCCCHHHHH
Q 014915 20 VSSKVLLGLSGVILVMLSVL----GSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC---ILVNAVKRQPMELVLETRI 92 (416)
Q Consensus 20 v~sk~~l~l~gv~~v~~sv~----~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f---~l~~~~~~~~~~~~~~~ri 92 (416)
-+++......+++..++++. +++=+-...|+|+=. ..++|.|-+.-|+.-.. .++...++. ++.++.-
T Consensus 125 ~~~~~~~~~~~iL~~i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~~---~~~~~~~ 199 (305)
T COG3301 125 GLSEAVHRALEILMAILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRTR---ENPHSTE 199 (305)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhcC---CCccchh
Confidence 34444333444444444443 333334567888864 67888877776665422 222222221 2334455
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhc-cCChhhHHHHH
Q 014915 93 SNALVEVGPSITLASLSEFLAFAVGS-FIPMPACRVFS 129 (416)
Q Consensus 93 ~~~l~~~g~si~~tslT~~~~F~~g~-~s~ipav~~F~ 129 (416)
.+.+.+...++..+-+-...+|+.+. +-+.-+.+...
T Consensus 200 ~~~~~r~~~~v~~~ell~la~f~~l~~~G~~a~~~a~~ 237 (305)
T COG3301 200 SKFLHRFEIPVVVTELLLLAAFFVLLSLGGVAAARALA 237 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 67888888899999988888888864 55655555544
No 82
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=29.52 E-value=7.6e+02 Score=26.82 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=26.2
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 014915 18 FYVSSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTL 54 (416)
Q Consensus 18 ~~v~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~ 54 (416)
.+.+ +-+.-+.|++..++.++++.|++..-|+=++.
T Consensus 10 l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisa 45 (573)
T COG4987 10 LYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISA 45 (573)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445 44445778888888999999999887775554
No 83
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=28.63 E-value=84 Score=24.21 Aligned_cols=45 Identities=24% Similarity=0.432 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHH
Q 014915 89 ETRISNALVEVGPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAV 136 (416)
Q Consensus 89 ~~ri~~~l~~~g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~v 136 (416)
.-++-..++-+||.+++++. .+|.. |...+++.-+-.+++++++.
T Consensus 24 Al~iNa~LalVGP~ili~tt--~iGL~-gla~kls~~kl~~I~~GV~l 68 (69)
T PF10942_consen 24 ALKINALLALVGPTILILTT--TIGLA-GLADKLSPSKLLWIFAGVAL 68 (69)
T ss_pred HHHHHHHHHHhccHHHHHHH--HHHHH-HHhcccCHHHHHHHHhccee
Confidence 34566789999999999854 44433 44478888898888888753
No 84
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=27.78 E-value=5e+02 Score=24.10 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHhhccCChhhH
Q 014915 101 PSITLASLSEFLAFAVGSFIPMPAC 125 (416)
Q Consensus 101 ~si~~tslT~~~~F~~g~~s~ipav 125 (416)
.+-..+++++.++|++|.+.|+=+.
T Consensus 129 ~~p~~~al~~~~sf~lg~liPllp~ 153 (213)
T PF01988_consen 129 ESPWKAALATFLSFILGGLIPLLPY 153 (213)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999986665444
No 85
>PRK11715 inner membrane protein; Provisional
Probab=25.52 E-value=6.4e+02 Score=26.54 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=55.5
Q ss_pred hhhhHHHHHHHHHHHHHHh--hccCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------Hhhccccccc
Q 014915 98 EVGPSITLASLSEFLAFAV--GSFIPMPACRVFSMFAALAVLLDFFLQVT----AFVALI----------EVHAPILGLW 161 (416)
Q Consensus 98 ~~g~si~~tslT~~~~F~~--g~~s~ipav~~F~i~aa~~vl~~fl~~lt----~f~alL----------~~~~p~l~~~ 161 (416)
.+-..+++-.+|=++-|+. ..-.++.++|..=+-.|++++.-.++++. |-.|-+ ..|...+.+.
T Consensus 303 A~KYgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~ 382 (436)
T PRK11715 303 AVKYAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRS 382 (436)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667766654444444 34568889998888888888777666654 111111 2455556666
Q ss_pred cchhhhHHHHHHHHHHHHHHhhhcc
Q 014915 162 GVKMVVVSVFLAFTVASIALSTRIE 186 (416)
Q Consensus 162 ~~k~~v~~~f~~~~~~si~g~~~i~ 186 (416)
+.+..++.+.++.+-.-+|++.+.+
T Consensus 383 ~k~g~~~~~~L~~LYg~Ly~lLq~E 407 (436)
T PRK11715 383 WKRGLLFAAALAALYGVLYGLLQSE 407 (436)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6676666666666666777777654
No 86
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=24.85 E-value=6.8e+02 Score=26.26 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=55.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHh--hccCChhhHHHHHHHHHHHHHHHHHHHHH----HHHHHH----------Hhhcccc
Q 014915 95 ALVEVGPSITLASLSEFLAFAV--GSFIPMPACRVFSMFAALAVLLDFFLQVT----AFVALI----------EVHAPIL 158 (416)
Q Consensus 95 ~l~~~g~si~~tslT~~~~F~~--g~~s~ipav~~F~i~aa~~vl~~fl~~lt----~f~alL----------~~~~p~l 158 (416)
+.+.+-..+++-.+|=++-|+. ..-.++.++|..=+-.|+++++-.++++. |-.|-+ ..|...+
T Consensus 294 ~~Ra~KYgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~v 373 (430)
T PF06123_consen 294 SERAVKYGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSV 373 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666666654444444 34468889998888888887776666654 111111 2355556
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhhhcc
Q 014915 159 GLWGVKMVVVSVFLAFTVASIALSTRIE 186 (416)
Q Consensus 159 ~~~~~k~~v~~~f~~~~~~si~g~~~i~ 186 (416)
.+.+.+..++...++.+-.-+|++.+.|
T Consensus 374 l~~~k~~~~~~~~L~~LY~~Ly~lLq~E 401 (430)
T PF06123_consen 374 LKSWKRGLIFAGLLAALYGFLYVLLQSE 401 (430)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666677776654
No 87
>COG1279 Lysine efflux permease [General function prediction only]
Probab=24.13 E-value=2.8e+02 Score=26.00 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=36.0
Q ss_pred hhHHhhchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHHHHHHHH-----HHHhhc-cCChhhHHHHHHHHHHHH
Q 014915 63 LVLAVGVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFL-----AFAVGS-FIPMPACRVFSMFAALAV 136 (416)
Q Consensus 63 Lvl~IGvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~-----~F~~g~-~s~ipav~~F~i~aa~~v 136 (416)
|+++||.-|.|++-+.-+| +++-+.+.+.++.+++ -|+.+. +...|.+..+-.+.+.+.
T Consensus 15 LI~pIGaQNaFVl~QGi~r---------------~~~l~~~~~c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~F 79 (202)
T COG1279 15 LILPIGAQNAFVLNQGIRR---------------EYVLPIALLCAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAF 79 (202)
T ss_pred HHHhccchhHHHHHHHHhh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 6678999999999776665 3455556666665543 223332 345555555555554443
Q ss_pred HH
Q 014915 137 LL 138 (416)
Q Consensus 137 l~ 138 (416)
++
T Consensus 80 Ll 81 (202)
T COG1279 80 LL 81 (202)
T ss_pred HH
Confidence 33
No 88
>PF01109 GM_CSF: Granulocyte-macrophage colony-stimulating factor; InterPro: IPR000773 Granulocyte-macrophage colony-stimulating factor (GMCSF) is a cytokine that acts in hematopoiesis to stimulate growth and differentiation of hematopoietic precursor cells from various lineages including granulocytes, macrophages, eosinophils and erythrocytes [, ]. GMCSF is a glycoprotein of ~120 residues that contains 4 conserved cysteines that participate in disulphide bond formation. The crystal structure of recombinant human GMCSF has been determined []. There are two molecules in the asymmetric unit, which are related by an approximate non-crystallographic 2-fold axis. The overall structure, which is highly compact and globular with a predominantly hydrophobic core, is characterised by a 4-alpha-helix bundle. The helices are arranged in a left-handed anti-parallel fashion, with two overhand connections. Within the connections is a two-stranded anti-parallel beta-sheet. The tertiary structure has a topology similar to that of Sus scrofa (pig) growth factor and interferon-beta. Most of the proposed critical regions for receptor binding are located on a continuous surface at one end of the molecule that includes the C terminus [].; GO: 0005129 granulocyte macrophage colony-stimulating factor receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3CXE_B 1CSG_A 2GMF_B.
Probab=23.80 E-value=27 Score=29.63 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.9
Q ss_pred ChhhHHhhhhHhhhcCCC
Q 014915 336 STEQFREKLPWFLNALPS 353 (416)
Q Consensus 336 ~~~~F~~~L~~FL~~~P~ 353 (416)
+-++|.+.|..||.+.|.
T Consensus 102 tfk~FKenLK~FL~~ipf 119 (122)
T PF01109_consen 102 TFKSFKENLKDFLFDIPF 119 (122)
T ss_dssp EHHHHHHHHHHHHTTS-S
T ss_pred eHHHHHHHHHHHHhcCCc
Confidence 458899999999999885
No 89
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=23.27 E-value=96 Score=26.25 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=20.8
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 014915 21 SSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTL 54 (416)
Q Consensus 21 ~sk~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~ 54 (416)
+...++....++..++++++|.+++.|.|.--+.
T Consensus 33 ~~~~~im~ifmllG~L~~l~S~~VYfwIGmlStk 66 (114)
T PF11023_consen 33 KASPIIMVIFMLLGLLAILASTAVYFWIGMLSTK 66 (114)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4444555555555667777777777777765443
No 90
>PF06741 LsmAD: LsmAD domain; InterPro: IPR009604 This entry represents a conserved region approximately 250 residues long located on eukaryotic ataxin-2 []. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].
Probab=22.37 E-value=74 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=23.9
Q ss_pred ecccCCChh-HHHHHHHHHHHHHHHhhhh
Q 014915 386 FHTPLNKQG-DYVNSLRAAREFSSRMSDT 413 (416)
Q Consensus 386 ~h~~l~~s~-d~i~al~~~r~ia~~i~~~ 413 (416)
|.|+|..++ ++-...+.|.+||.+|...
T Consensus 12 YTT~Ld~~~~~~k~~~~~A~riA~EIe~~ 40 (72)
T PF06741_consen 12 YTTPLDRSDPDYKEREAEAERIAREIEGS 40 (72)
T ss_pred ceeeccCCCcchHHHHHHHHHHHHHHhcc
Confidence 888997665 9999999999999999754
No 91
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=21.87 E-value=5.6e+02 Score=25.82 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=18.5
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHhhhcc-cccccc
Q 014915 156 PILGLWGVKMVVVSVFLAFTVASIALSTRIE-AGLEQQ 192 (416)
Q Consensus 156 p~l~~~~~k~~v~~~f~~~~~~si~g~~~i~-~gld~~ 192 (416)
|++.+-+...+..++...+++........|| .|++.+
T Consensus 233 piig~ip~~Lv~aAi~wslfGtv~la~vGIKLPGLef~ 270 (405)
T COG1133 233 PIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFR 270 (405)
T ss_pred cccccCchHHHHHHHHHHHhchHHHHhhhccCCCcccc
Confidence 5666655554444444444444444444555 555543
No 92
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=20.49 E-value=4.5e+02 Score=21.00 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=24.4
Q ss_pred HhhHHh--hchhHHHHHHHHhhccCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014915 62 FLVLAV--GVDNMCILVNAVKRQPMELVLETRISNALVEVGPSITLASLSEFLAFA 115 (416)
Q Consensus 62 fLvl~I--Gvd~~f~l~~~~~~~~~~~~~~~ri~~~l~~~g~si~~tslT~~~~F~ 115 (416)
|+++|+ .....-.+++.|.-.++++..+--...--+.+|..+.+.++...++.+
T Consensus 7 f~ilg~li~~~k~~~LIaGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~li~~l 62 (97)
T PF12650_consen 7 FFILGILILKGKGYFLIAGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIILLIGGL 62 (97)
T ss_pred HHHHHHHHHhcCcccchhhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 345555667777633221111111223334555666666654444433
Done!