Query 014915
Match_columns 416
No_of_seqs 242 out of 1247
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 03:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aqp_A Probable secdf protein- 99.5 5.6E-13 1.9E-17 145.1 20.6 128 24-152 295-423 (741)
2 4dx5_A Acriflavine resistance 99.5 1.4E-12 4.8E-17 147.3 20.7 188 25-213 363-599 (1057)
3 2v50_A Multidrug resistance pr 99.5 7.8E-13 2.7E-17 149.3 18.0 187 25-212 363-598 (1052)
4 3ne5_A Cation efflux system pr 99.3 9.7E-12 3.3E-16 140.4 14.7 162 25-189 368-568 (1054)
5 3aqp_A Probable secdf protein- 99.3 4.4E-11 1.5E-15 130.2 15.9 129 23-152 590-721 (741)
6 4dx5_A Acriflavine resistance 99.2 1.8E-10 6E-15 130.2 15.9 127 26-153 897-1028(1057)
7 3ne5_A Cation efflux system pr 99.1 2.4E-10 8.2E-15 129.0 11.3 130 24-154 901-1045(1054)
8 2v50_A Multidrug resistance pr 99.1 4.6E-10 1.6E-14 126.7 13.4 125 27-152 897-1025(1052)
9 2kxh_B Peptide of FAR upstream 68.6 3.5 0.00012 25.4 2.4 21 392-412 6-26 (31)
10 2gmf_A Granulocyte-macrophage 29.9 17 0.00059 29.4 1.1 20 336-356 102-121 (127)
No 1
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.51 E-value=5.6e-13 Score=145.07 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhhhhH
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPS 102 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~s 102 (416)
.+.++..++++.+++++++|++.++|.++|. +..+.+.+++|++|||.+|++++++++. ++.++++++.+++++++.+
T Consensus 295 ~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~ 373 (741)
T 3aqp_A 295 PHLGLVASLGLLYTSALILGLLSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLT 373 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4468888899999999999999999999997 7888899999999999999999998864 4678999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 103 ITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
++.+++|++++|+...+++.+.+|.|++..++|+++.++..+|+.|+++.
T Consensus 374 Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al~~~P~l~~ 423 (741)
T 3aqp_A 374 IMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNLVFSRHLLE 423 (741)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999984
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.47 E-value=1.4e-12 Score=147.27 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=149.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-C-CCCHHHHHHHHHHhhhhH
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-M-ELVLETRISNALVEVGPS 102 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~-~~~~~~ri~~~l~~~g~s 102 (416)
..++..++++.++++.++|++.++|.+++. +..+...+++|++|||++++++++++.. + +.++.+++.++.++.+.+
T Consensus 363 ~~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~p 441 (1057)
T 4dx5_A 363 RATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGA 441 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHeeccccceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 346777888899999999999999999997 7788888999999999999999988763 3 789999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------------
Q 014915 103 ITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPIL--------------------- 158 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p~l--------------------- 158 (416)
+++|++|++++|+..++++ -+.++.|++..++|+++.++..+|+.|+++..+.+.-
T Consensus 442 i~~t~ltt~~~f~pl~~~~g~~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1057)
T 4dx5_A 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFE 521 (1057)
T ss_dssp HHHHHHHHHHHHSGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCSTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHHHHHHHHHH
Confidence 9999999999999999987 6779999999999999999999999999985331100
Q ss_pred ---------ccc--cchhhhHHHHHHHHHHHHHHhhhcccccccc---------ccCCCCchhhhh---HHHHhhhcC
Q 014915 159 ---------GLW--GVKMVVVSVFLAFTVASIALSTRIEAGLEQQ---------IVLPRDSYLQGY---FDNTTEYLR 213 (416)
Q Consensus 159 ---------~~~--~~k~~v~~~f~~~~~~si~g~~~i~~gld~~---------~~lp~dS~~~~~---~~~~~~~f~ 213 (416)
.++ ..|..+++++++++++++++..+++.++-+. -.+|+++.+.+. .+.+++.+.
T Consensus 522 ~~~~~y~~~l~~~lr~~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~ 599 (1057)
T 4dx5_A 522 KSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYL 599 (1057)
T ss_dssp HHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 000 1244566777788888888888888775322 246677655443 334444444
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.46 E-value=7.8e-13 Score=149.29 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc--CCCCHHHHHHHHHHhhhhH
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP--MELVLETRISNALVEVGPS 102 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~--~~~~~~~ri~~~l~~~g~s 102 (416)
..++..++++.++++.++|++.++|++++. +..+...+++|++|||++|+++.+++.. ++.+..+++.++.++.+.+
T Consensus 363 ~~~li~~~~ip~s~~~~~~~l~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~p 441 (1052)
T 2v50_A 363 RATLIPTIAVPVVLLGTFGVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGA 441 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHhhccceEEEehHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 346777888899999999999999999997 7788888999999999999999997753 5788999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------
Q 014915 103 ITLASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIEVHAPI---------------------- 157 (416)
Q Consensus 103 i~~tslT~~~~F~~g~~s~i---pav~~F~i~aa~~vl~~fl~~lt~f~alL~~~~p~---------------------- 157 (416)
+++|++|++++|+..++++. +.++.|++..++|+++.+++.+|+.|+++..+.+-
T Consensus 442 il~t~ltt~~~f~pl~~~~~~~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (1052)
T 2v50_A 442 LVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFL 521 (1052)
T ss_dssp THHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccchhhhHHHHHHH
Confidence 99999999999999999987 58999999999999999999999999988432110
Q ss_pred -cccc---------cchhhhHHHHHHHHHHHHHHhhhccccccccc---------cCCCCchhhhh---HHHHhhhc
Q 014915 158 -LGLW---------GVKMVVVSVFLAFTVASIALSTRIEAGLEQQI---------VLPRDSYLQGY---FDNTTEYL 212 (416)
Q Consensus 158 -l~~~---------~~k~~v~~~f~~~~~~si~g~~~i~~gld~~~---------~lp~dS~~~~~---~~~~~~~f 212 (416)
+.+. ..|..+++++++++++++++..+++.++.+.. -+|+++.+.+. .+.+++++
T Consensus 522 ~~~~~y~~~l~~~l~~~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t~~~~~~ie~~l 598 (1052)
T 2v50_A 522 STTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYL 598 (1052)
T ss_dssp HHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccCCCCCCCEEEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 0000 11334566667777778888888877764432 47887755433 33444444
No 4
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.32 E-value=9.7e-12 Score=140.37 Aligned_cols=162 Identities=13% Similarity=0.088 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccC------------CCCHHHHH
Q 014915 25 LLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETRI 92 (416)
Q Consensus 25 ~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~------------~~~~~~ri 92 (416)
..++..++++.++++.+++++.++|.+++. +..+...+++|+++||++++++.+++..+ +.++.+++
T Consensus 368 ~~~li~~~~ip~~~~~~~~~l~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~ 446 (1054)
T 3ne5_A 368 RSALVAIISLPLGLCIAFIVMHFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVI 446 (1054)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhhheecCcEEEeeHHHHHHhhccccccccccccCCHHHHH
Confidence 346777888899999999999999999997 77777888999999999999998876533 56788999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Q 014915 93 SNALVEVGPSITLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEVH--------------- 154 (416)
Q Consensus 93 ~~~l~~~g~si~~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~--------------- 154 (416)
.++.++.+++++.+++|++++|+..++++ .+.++.|++..++|+++.+++.+|+.|+++..+
T Consensus 447 ~~a~~~~~~~i~~s~ltt~~~f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~ 526 (1054)
T 3ne5_A 447 TDASVEVGPALFISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNR 526 (1054)
T ss_dssp HTTTTTHHHHHHHHHHHHHHTTGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC------------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHH
Confidence 99999999999999999999999999887 778999999999999999999999999988421
Q ss_pred ------ccc---cccccchhhhHHHHHHHHHHHHHHhhhccccc
Q 014915 155 ------API---LGLWGVKMVVVSVFLAFTVASIALSTRIEAGL 189 (416)
Q Consensus 155 ------~p~---l~~~~~k~~v~~~f~~~~~~si~g~~~i~~gl 189 (416)
.++ ..+ .|..+++++++++++++++..+++.++
T Consensus 527 ~~~~~y~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~l~~~f 568 (1054)
T 3ne5_A 527 FLIRVYHPLLLKVLH--WPKTTLLVAALSVLTVLWPLNKVGGEF 568 (1054)
T ss_dssp HHHHHHHHHHHHHTS--STHHHHHHHHHHHHHTHHHHTTCCBCS
T ss_pred HHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 111 111 244566777788888888888887765
No 5
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=99.27 E-value=4.4e-11 Score=130.23 Aligned_cols=129 Identities=12% Similarity=0.247 Sum_probs=117.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccC---CCCHHHHHHHHHHhh
Q 014915 23 KVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM---ELVLETRISNALVEV 99 (416)
Q Consensus 23 k~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~---~~~~~~ri~~~l~~~ 99 (416)
++..++..++.+.++++.++|++.++|++++. ...+...+++|+++||.+|+++++++..+ +.+.+|++.+++++.
T Consensus 590 s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~ 668 (741)
T 3aqp_A 590 DWTFGVASILAVAHDVAIVAGMYSLLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQT 668 (741)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhhcceEEehHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45668888999999999999999999999997 55566667799999999999999987643 468999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 100 GPSITLASLSEFLAFAVGSFIPMPACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 100 g~si~~tslT~~~~F~~g~~s~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
+.+++.|++|++++|+..+++..+.++.|++..++|++++.+..+++.|+++.
T Consensus 669 ~~~il~Tsltt~~g~~~L~~~g~~~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~ 721 (741)
T 3aqp_A 669 LSRTVMTSLTTLLPILALLFLGGSVLRDFALAIFVGIFVGTYSSIYVVSALVV 721 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999984
No 6
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=99.18 E-value=1.8e-10 Score=130.16 Aligned_cols=127 Identities=15% Similarity=0.079 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhc--cCCCCHHHHHHHHHHhhhhHH
Q 014915 26 LGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQ--PMELVLETRISNALVEVGPSI 103 (416)
Q Consensus 26 l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~--~~~~~~~~ri~~~l~~~g~si 103 (416)
.++..++.+.++++.++|.+.++|.+++. ...+...+++|+++||.+++++++++. .++.+..+++.++..+.+.++
T Consensus 897 ~~l~~l~~i~~~~~~~~~~l~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpi 975 (1057)
T 4dx5_A 897 IPFSVMLVVPLGVIGALLAATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPI 975 (1057)
T ss_dssp THHHHHTTHHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHHHhHhHH
Confidence 36677778889999999999999999997 777777888999999999999999876 357899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014915 104 TLASLSEFLAFAVGSFIP---MPACRVFSMFAALAVLLDFFLQVTAFVALIEV 153 (416)
Q Consensus 104 ~~tslT~~~~F~~g~~s~---ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~ 153 (416)
++|++|+++||+..++++ .+.++.|++..+.|+++..++.+++.|+++..
T Consensus 976 l~t~ltt~~g~~pl~~~~g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~ 1028 (1057)
T 4dx5_A 976 LMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVV 1028 (1057)
T ss_dssp HHHHHHHHHHTHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999985 89999999999999999999999999998853
No 7
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=99.09 E-value=2.4e-10 Score=129.03 Aligned_cols=130 Identities=8% Similarity=-0.021 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhccC------------CCCHHHH
Q 014915 24 VLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQPM------------ELVLETR 91 (416)
Q Consensus 24 ~~l~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~~------------~~~~~~r 91 (416)
+..++..++++.++++.++|.+.++|.+++. ...+...+++|+++||.+++++.+++..+ +.+..++
T Consensus 901 ~~~~l~il~~ip~~~~g~~~~l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~A 979 (1054)
T 3ne5_A 901 VGEALLIISSVPFALVGGIWLLWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEA 979 (1054)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcccccCCCCHHHH
Confidence 3446777888899999999999999999997 77777788999999999999977765533 5677899
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014915 92 ISNALVEVGPSITLASLSEFLAFAVGSFI---PMPACRVFSMFAALAVLLDFFLQVTAFVALIEVH 154 (416)
Q Consensus 92 i~~~l~~~g~si~~tslT~~~~F~~g~~s---~ipav~~F~i~aa~~vl~~fl~~lt~f~alL~~~ 154 (416)
+.++.++.+.++++|++|+++||+..+++ ..+.++.|++..+.|+++..++.+++.|+++..+
T Consensus 980 i~~a~~~~~rpil~t~ltti~g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~ 1045 (1054)
T 3ne5_A 980 LYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLM 1045 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHhhcCCChHHhccCHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 4788999999999999999999999999998644
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=99.08 E-value=4.6e-10 Score=126.70 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHhhHhhHHhhchhHHHHHHHHhhcc-CCCCHHHHHHHHHHhhhhHHHH
Q 014915 27 GLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVNAVKRQP-MELVLETRISNALVEVGPSITL 105 (416)
Q Consensus 27 ~l~gv~~v~~sv~~s~Gl~~~~G~~~~~i~~~viPfLvl~IGvd~~f~l~~~~~~~~-~~~~~~~ri~~~l~~~g~si~~ 105 (416)
++..++++.++++.+++.+.++|.+++. ...+.-.+++|+++||.+|+++++++.. ++.+..+++.++.++.+.+|++
T Consensus 897 ~l~il~~ip~~~~g~~~~~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~ 975 (1052)
T 2v50_A 897 PFSVMLVVPLGVIGALLATSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVM 975 (1052)
T ss_dssp THHHHTHHHHHHTTHHHHHHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHcCeEEEeehHHHHHHcCCCHHHHHHHHHHHhHHHHHH
Confidence 4555667778888999999999999996 7777778889999999999999998764 4678999999999999999999
Q ss_pred HHHHHHHHHHhhccCCh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014915 106 ASLSEFLAFAVGSFIPM---PACRVFSMFAALAVLLDFFLQVTAFVALIE 152 (416)
Q Consensus 106 tslT~~~~F~~g~~s~i---pav~~F~i~aa~~vl~~fl~~lt~f~alL~ 152 (416)
|++|+++||+..++++- +.++.|++..+.|+++..++.+++.|+++.
T Consensus 976 t~~tt~~g~~pl~~~~~~g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~ 1025 (1052)
T 2v50_A 976 TSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVPLFYV 1025 (1052)
T ss_dssp HHHHHHTTSHHHHTCCSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCChhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 789999999999999999999999999874
No 9
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=68.55 E-value=3.5 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.447 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhh
Q 014915 392 KQGDYVNSLRAAREFSSRMSD 412 (416)
Q Consensus 392 ~s~d~i~al~~~r~ia~~i~~ 412 (416)
..+.|.+|++.+|+||.+|.-
T Consensus 6 ~~daFadA~~RaRQIaAKig~ 26 (31)
T 2kxh_B 6 VNDAFKDALQRARQIAAKIGG 26 (31)
T ss_dssp CSSHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999864
No 10
>2gmf_A Granulocyte-macrophage colony-stimulating factor; granulocyte-macrophage colony stimulating growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.2 PDB: 1csg_A 3cxe_B*
Probab=29.86 E-value=17 Score=29.44 Aligned_cols=20 Identities=45% Similarity=0.788 Sum_probs=16.7
Q ss_pred ChhhHHhhhhHhhhcCCCccc
Q 014915 336 STEQFREKLPWFLNALPSADC 356 (416)
Q Consensus 336 ~~~~F~~~L~~FL~~~P~~~c 356 (416)
+=++|.+.|..||.+.|- +|
T Consensus 102 TfksFk~nLK~FLf~Ipf-dC 121 (127)
T 2gmf_A 102 TFESFKENLKDFLLVIPF-DC 121 (127)
T ss_dssp EHHHHHHHHHHHHTTSCS-SC
T ss_pred eHHHHHHHHHHHHhcCCc-cc
Confidence 457899999999999985 44
Done!