BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014916
(416 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 297 MQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN-ATGRARLLM 351
+++V V TGEE E V LF F SW ERG+G L++N ST+ T ++RL+M
Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 445
Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 390
R +G+ RLILN L+ M++ +K I +++ +G
Sbjct: 446 RTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 484
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 282 ATSIASKSEGTTFPSMQEVV-VETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN 338
A S A+ ++ T + + E V V TGEE E V LF F SW ERG+G L++N
Sbjct: 294 AESAAAYTKATAWTCLLEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLN 353
Query: 339 --VSTN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 390
ST+ T ++RL+MR +G+ RLILN L+ M++ +K I ++ +G
Sbjct: 354 DMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQMDKASEKSIRITATDAEDQG 408
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2
PE=2 SV=2
Length = 1085
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 185 VEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKI-LQNYENKQVRIVMRRDQVL 243
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 244 KLCANHRITPDMTLQNMKGTERVWVWTAC--DFADGERKIEHLAVRFKLQDVADSFK 298
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 15/222 (6%)
Query: 200 VDKPEN-EDEKETSHETTDS--SQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDG 256
VDKP + KE ++T S+ +FG S +F LA + ++ FAFGS K+
Sbjct: 679 VDKPVDLSTRKENDADSTSQVESKTVTFGFGSGPGLSFADLASS--NSGDFAFGSKDKNF 736
Query: 257 SASNSTSASVFGQVNNGNSSLFNTPATSIASKSEGTTFP---SMQEVVVETGEENEKVVF 313
+N T A+VFG + + +E F S+ EV V++GEE+E+++F
Sbjct: 737 QWAN-TGAAVFGAQSTSKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVKSGEEDEEILF 795
Query: 314 SADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKL 371
+ L+ + WK+RG G++K+ T R+LMR +++ N + M+L
Sbjct: 796 KERAKLYRWDREASQWKDRGVGDIKILWHT-VKNYFRILMRRDQVFKVCANHVITKTMEL 854
Query: 372 --TNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
N+ + + + A +G++ + A++F+ + + F+
Sbjct: 855 KPLNVSNNALVWTASDYA-DGEAKVEQLAVRFKTKEMADCFK 895
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2
Length = 465
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 54/88 (61%), Gaps = 5/88 (5%)
Query: 297 MQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTNA-TGRARLLM 351
++++ V TGEE E V + LF F SW ERG+G L++N ST+ T ++RL+M
Sbjct: 284 LEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIERGRGTLRLNDTASTDCGTLQSRLIM 343
Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGI 379
R +G+ RLILN+ L+ MK+ + K +
Sbjct: 344 RNQGSLRLILNSKLWAQMKIQRANHKNV 371
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 297 MQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN-ATGRARLLM 351
+++V V TGEE E V LF F SW ERG+G L++N ST+ T ++RL+M
Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 377
Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEG 390
R +G+ RLILN L+ M++ +K I +++ +G
Sbjct: 378 RTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDTEDQG 416
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
GN=RGPD4 PE=2 SV=3
Length = 1758
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENEKVVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 1345 VEVSSGEENEKVVFSHRAELYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1403
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N ++ PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1404 KLCANHTITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1458
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 294 FPSMQEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLL 350
P E+V+ GEE EKV++S LF F D WKERG G LK+ + G+ R+L
Sbjct: 1044 MPEKVELVI--GEEGEKVLYSQGVKLFRF-DAEVRQWKERGLGNLKI-LKNEVNGKPRML 1099
Query: 351 MRARGNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIV 407
MR ++ N + M L + G A + SA ++G + L A KF+ +
Sbjct: 1100 MRREQVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELA 1157
Query: 408 EEFQ 411
EEF+
Sbjct: 1158 EEFK 1161
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1
Length = 494
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 297 MQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN--VSTN-ATGRARLLM 351
+++V V TGEE E V LF F SW ERG+G L++N ST+ T ++RL+M
Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 372
Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386
R +G+ RLILN L+ M++ +K I +++
Sbjct: 373 RTQGSLRLILNTKLWAQMQIDKASEKSIRITAMDT 407
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 2320 VEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 2378
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 2379 KLCANHRITPDMTLQNMKGTERVWLWTAC--DFADGERKVEHLAVRFKLQDVADSFK 2433
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 30/232 (12%)
Query: 200 VDKPEN---EDEKETSHETTDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDG 256
+DKP + E +T + S++ SFG SST +F LA + ++ FAFGS K+
Sbjct: 2813 MDKPVDLSTRKEIDTDSTSQGESKIVSFGFGSSTGLSFADLASS--NSGDFAFGSKDKNF 2870
Query: 257 SASNSTSASVFGQVNNGNSSLFNTPATSIASKSEGT-------------TFPSMQEVVVE 303
+N T A+VFG + G S A + +G+ S+ EV V+
Sbjct: 2871 QWAN-TGAAVFGTQSVGTQS-----AGKVGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 2924
Query: 304 TGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMRARGNYRLIL 361
+GEE+E+++F + L+ + D S WKERG G++K+ T R+LMR +++
Sbjct: 2925 SGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHT-MKNYYRILMRRDQVFKVCA 2983
Query: 362 NASLYPDMKL--TNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
N + M+L N+ + + + A +G++ + A++F+ + + F+
Sbjct: 2984 NHVITKTMELKPLNVSNNALVWTASDYA-DGEAKVEQLAVRFKTKEVADCFK 3034
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE+EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 2021 EKVELVTGEEDEKVLYSQRVKLFRF-DAEVSQWKERGLGNLKI-LKNEVNGKLRMLMRRE 2078
Query: 355 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + D+ + A + ++G + L A KF+ + EEF+
Sbjct: 2079 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLEQLAAKFKTPELAEEFK 2136
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 21/117 (17%)
Query: 276 SLFNTPATSIASKSEGTTF-----------PSMQEVV-------VETGEENEKVVFSADS 317
S+F TP A+K+ T P + VV V+TGEE+E+ F +
Sbjct: 1140 SVFGTPTLETANKNHETDGGSAHGDDDDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRA 1199
Query: 318 VLFEFLDGS--WKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLT 372
LF F S WKERG G +K+ + +G+ RLLMR ++ N + PDMKLT
Sbjct: 1200 KLFRFDVESKEWKERGIGNVKI-LRHKTSGKIRLLMRREQVLKICANHYISPDMKLT 1255
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
GN=RGPD1 PE=2 SV=1
Length = 1748
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 1329 VEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1387
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1388 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1442
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1030 EKVELVTGEEGEKVLYSQGVKLFRF-DAEISQWKERGLGNLKI-LKNEVNGKPRMLMRRD 1087
Query: 355 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + D+ + A + ++G + L A +F+ + EEF+
Sbjct: 1088 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLERLAAQFKTPELAEEFK 1145
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
GN=RGPD3 PE=2 SV=2
Length = 1758
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + + + G WKERG G++K+ + R+LMR
Sbjct: 1345 VEVSSGEENEQVVFSHRAEFYRYDKDVGQWKERGIGDIKI-LQNYDNKHVRILMRRDQVL 1403
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1404 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1458
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LM+
Sbjct: 1046 EKVELVTGEEGEKVLYSQGVKLFRF-DAEVSQWKERGLGNLKI-LKNEVNGKVRMLMQRE 1103
Query: 355 GNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1104 QVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFK 1161
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
GN=RGPD2 PE=2 SV=1
Length = 1756
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 1337 VEVSSGEENEQVVFSHMAELYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1395
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1396 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1450
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1038 EKVELVTGEEGEKVLYSQGVKLFRF-DAEISQWKERGLGNLKI-LKNEVNGKPRMLMRRD 1095
Query: 355 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + D+ + A + ++G + L A +F+ + EEF+
Sbjct: 1096 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLERLAAQFKTPELAEEFK 1153
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + L+ + G WKERG G++K+ + + R++MR
Sbjct: 2157 VEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 2215
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L M ++ + AC +G+ + A++F+ + + F+
Sbjct: 2216 KLCANHRITPDMTLQTMKGTERVWVWTAC--DFADGERKIEHLAVRFKLQDVADSFK 2270
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 276 SLFNTPATSIASKSEGT------------------TFPSMQEVVVETGEENEKVVFSADS 317
S+F T A+ +A+KS T P ++ V+TGEE+E+ F +
Sbjct: 1134 SVFTTAASELANKSHETDGGSAHGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRA 1193
Query: 318 VLFEFLDGS---WKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLT 372
LF F DG WKERG G +K+ + +G+ RLLMR ++ N + PDMKLT
Sbjct: 1194 KLFRF-DGESKEWKERGIGNVKI-LRHKTSGKIRLLMRREQVLKICANHYISPDMKLT 1249
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE+EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1858 EKVELVTGEEDEKVLYSQRVKLFRF-DAEISQWKERGLGNLKI-LKNEVNGKLRMLMRRE 1915
Query: 355 GNYRLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + D+ + A + ++G + L A KF+ + EEF+
Sbjct: 1916 QVLKVCANHWITTTMNLKPLSGSDRAWMWLA--SDFSDGDAKLEQLAAKFKTPELAEEFK 1973
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 12/195 (6%)
Query: 224 FGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTSASVFGQVNNGNSSLFNTPAT 283
FG S T +F LA + ++ FAFGS K+ +N T A+VFG +
Sbjct: 2674 FGFGSGTGLSFADLASS--NSGDFAFGSKDKNFQWAN-TGAAVFGTQTTSKGGEDEDGSD 2730
Query: 284 SIASKSEGTTFP---SMQEVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVN 338
+E F S+ EV V++GEE+E+V+F + L+ + D S WKERG G++K+
Sbjct: 2731 EDVVHNEDIHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKERGIGDIKIL 2790
Query: 339 VSTNATGRARLLMRARGNYRLILNASLYPDMKL--TNMDKKGITFACINSATEGKSGLST 396
T R+LMR +++ N + M+L N+ + + + A +G++ +
Sbjct: 2791 WHT-MKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYA-DGEAKVEQ 2848
Query: 397 FALKFRDASIVEEFQ 411
A++F+ + E F+
Sbjct: 2849 LAVRFKTKEMTESFK 2863
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
GN=RGPD5 PE=1 SV=3
Length = 1765
Score = 62.0 bits (149), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + ++ + G WKERG G++K+ + + R++MR
Sbjct: 1344 VEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1402
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1403 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1457
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1045 EKVELVTGEEGEKVLYSQGVKLFRF-DAEVRQWKERGLGNLKI-LKNEVNGKLRMLMRRE 1102
Query: 355 GNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1103 QVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFK 1160
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
GN=RGPD8 PE=1 SV=2
Length = 1765
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
V V +GEENE+VVFS + ++ + G WKERG G++K+ + + R++MR
Sbjct: 1344 VEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKI-LQNYDNKQVRIVMRRDQVL 1402
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQ 411
+L N + PDM L NM ++ + AC +G+ + A++F+ + + F+
Sbjct: 1403 KLCANHRITPDMSLQNMKGTERVWVWTAC--DFADGERKVEHLAVRFKLQDVADSFK 1457
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 10/120 (8%)
Query: 298 QEVVVETGEENEKVVFSADSVLFEFLDG---SWKERGKGELKVNVSTNATGRARLLMRAR 354
++V + TGEE EKV++S LF F D WKERG G LK+ + G+ R+LMR
Sbjct: 1045 EKVELVTGEEGEKVLYSQGVKLFRF-DAEVRQWKERGLGNLKI-LKNEVNGKLRMLMRRE 1102
Query: 355 GNYRLILNASLYPDMKLTNMDKKGITFACINSA---TEGKSGLSTFALKFRDASIVEEFQ 411
++ N + M L + G A + SA ++G + L A KF+ + EEF+
Sbjct: 1103 QVLKVCANHWITTTMNLKPLS--GSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFK 1160
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 21/137 (15%)
Query: 292 TTFPSMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNV-STNATGRAR 348
+T + + + TGEE E+ +FS + L+ D +WKERG+G LKVNV +G R
Sbjct: 258 STMHQLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGR 317
Query: 349 LLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSA-----------TEGKSGLSTF 397
LLMR +R+I+N L+ M KK + A +S GKS L +
Sbjct: 318 LLMRNDAVHRVIMNVPLF-----QGMSKKSLQIASASSGGSANYLKIFVIENGKSVL--Y 370
Query: 398 ALKFRDASIVEEFQTAV 414
A++ +D S+ E+ + V
Sbjct: 371 AVRVKDNSLAEQLRNHV 387
>sp|Q6PDH4|RNB3L_MOUSE Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1
Length = 491
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 297 MQEVVVETGEENEKVVFSADSVLFEFLDG--SWKERGKGELKVNVSTN---ATGRARLLM 351
++++ V TGEE E V + +F F SW ERG+G L++N + T ++RL+M
Sbjct: 309 LEKIDVITGEETEHNVLKINCKIFVFNKATESWSERGQGILRLNDTAGRECGTLQSRLIM 368
Query: 352 RARGNYRLILNASLYPDMKLTNMDKKGI 379
R +G+ RL+LN+ L+ MK+ +K +
Sbjct: 369 RNQGSLRLVLNSRLWAQMKIQRASQKNL 396
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 296 SMQEVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMRA 353
+++V V+T EE+E+V++ + LF F D WKERG G+ K + T + R+LMR
Sbjct: 70 HLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKF-LKNKKTNKVRILMRR 128
Query: 354 RGNYRLILNASLYPDMKLT-NM-DKKGITFACINSATEGKSGLSTFALKF 401
++ N + P+ L N+ + +AC EG++ TFA++F
Sbjct: 129 DKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRF 178
>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup61 PE=1 SV=2
Length = 549
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 305 GEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILN 362
GEENE VF + ++ F S+ + G G LK+NV + TG AR+L R G+ +L+LN
Sbjct: 432 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRD-TGSARILARVEGSGKLLLN 490
Query: 363 ASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEF 410
L D + + KK + ++T+GKS + + ++ ++ S E+
Sbjct: 491 VRLCQDFEYSLAGKKDVKVPA--ASTDGKS-IEMYLIRVKEPSTAEKL 535
>sp|P40517|YRB2_YEAST Ran-specific GTPase-activating protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB2 PE=1
SV=1
Length = 327
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 39/207 (18%)
Query: 188 EKSEVDNGKT--AGVDKPENEDEK--------------ETSHETTDSSQLSSFGQL---- 227
+K +VD+GKT +G+ + + +++K +T D +S L
Sbjct: 74 KKIKVDDGKTVESGIVEDDKKEDKFVFGAASKFGTGFGVAKKDTKDGDATTSTESLPASD 133
Query: 228 SSTQNAFTGLAGTGFSTSTFAFGS---IPKDGSASNSTSASVFGQVNNGNSSLFNTPATS 284
S T+ F G+G S FGS I K+ + +NS S + + + ++ +
Sbjct: 134 SKTKKPFA--FGSGLS-----FGSGFNILKNKTENNSESEK---KATDVDKDKVHSGSEQ 183
Query: 285 IASKSEGTTFP----SMQEVVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVN 338
+A+ SE T +Q+ V++GEE+E+ ++ ++ L++ + WKERG G +K+N
Sbjct: 184 LANASEDTKDKPKPLKLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIKIN 243
Query: 339 VSTNATGRARLLMRARGNYRLILNASL 365
S + + R++MR+RG ++ILN L
Sbjct: 244 KSKDDVEKTRIVMRSRGILKVILNIQL 270
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1
Length = 215
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 313 FSADSVLFEFLDGS--WKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMK 370
F + LF F + WKERG G+ ++ + TG+ RL+MR ++ N L P+MK
Sbjct: 97 FKMRAKLFRFDKAASEWKERGTGDARL-LKHKETGKTRLVMRRDKTLKVCANHLLMPEMK 155
Query: 371 LT-NM-DKKGITFACINSATEGKSGLSTFALKF 401
LT N+ + + +EG+ TFA++F
Sbjct: 156 LTPNVGSDRSWVWTVAADVSEGEPTAETFAIRF 188
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C
PE=2 SV=1
Length = 219
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 297 MQEVVVETGEENEKVVFSADSVLFEF-LDGS-WKERGKGELKVNVSTNATGRARLLMRAR 354
++EV V TGEE+E V S ++ F +G+ WKERG G +K+ + TG+ RL+MR
Sbjct: 33 LEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKL-LKHKETGKVRLVMRQS 91
Query: 355 GNYRLILNASLYPDMKLTNMDKKGITFACINSAT---EGKSGLSTFALKFRDASI 406
++ N + M + + G +C+ AT +G+ F ++F ASI
Sbjct: 92 KTLKICANHLISSGMSV--QEHSGNEKSCLWHATDFSDGELKDELFCIRF--ASI 142
>sp|O08587|NUP50_RAT Nuclear pore complex protein Nup50 OS=Rattus norvegicus GN=Nup50
PE=2 SV=2
Length = 467
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNY-R 358
VV E EE+ +S LF D +KE+G G L ++ AT + +LL+RA N
Sbjct: 347 VVTEVKEED--AFYSKKCKLFYKKDNEFKEKGVGTL--HLKPTATQKTQLLVRADTNLGN 402
Query: 359 LILNASLYPDMKLTNMDKKGITFACI 384
++LN + P+M T K + C+
Sbjct: 403 ILLNVLIPPNMPCTRTGKNNVLIVCV 428
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKV-RRNQTASTPSSNPF 71
KR A +EL+ N DEED E E GTF A++EV+ R + K RRN + S F
Sbjct: 3 KRVAEKELTDRN---WDEEDEVE-EMGTFSVASEEVMKNRAVKKAKRRNIGFESDSGGAF 58
Query: 72 AGIR--LVP 78
G + +VP
Sbjct: 59 KGFKGLVVP 67
>sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50 OS=Mus musculus GN=Nup50 PE=1
SV=3
Length = 466
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 300 VVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGNY-R 358
VV E EE+ +S LF D +KE+G G L ++ AT + +LL+RA N
Sbjct: 346 VVTEVKEED--AFYSKKCKLFYKKDNEFKEKGVGTL--HLKPTATQKTQLLVRADTNLGN 401
Query: 359 LILNASLYPDMKLTNMDKKGITFACI 384
++LN + P+M T K + C+
Sbjct: 402 ILLNVLIAPNMPCTRTGKNNVLIVCV 427
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKV-RRNQTASTPSSNPF 71
KR A +EL+ N DEED E E GTF A++EV+ R + K RRN + S F
Sbjct: 3 KRVAEKELTDRN---WDEEDEVE-EMGTFSVASEEVMKNRAVKKAKRRNVGFESDSGGAF 58
Query: 72 AGIR--LVP 78
G + +VP
Sbjct: 59 KGFKGLVVP 67
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP2 PE=1 SV=2
Length = 720
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 300 VVVETGEENEKVVFSADSVLFEF--LDGSWKERGKGELKVNVSTNATGRARLLMRARGNY 357
+ ++ GEE+E +FS + L F S+ RG GE+K+ + + RLL R+ G
Sbjct: 597 INLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGVGEMKLLKKKDDPSKVRLLCRSDGMG 656
Query: 358 RLILNASLYPDMKLTNM---DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAV 414
++LNA++ K + + I + A +GK L T+ +KF+ F A+
Sbjct: 657 NVLLNATVVDSFKYEPLAPGNDNLIKAPTV--AADGK--LVTYIVKFKQKEEGRSFTKAI 712
>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1 OS=Mus musculus
GN=Srrm1 PE=1 SV=2
Length = 946
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 67 SSNPFAGIRLVPSTEP----SATVTPATTEPTKTVSPAATELLESSENKVSVDANNDAGK 122
SS P RL PS P +PAT P SP + + +++VSV +GK
Sbjct: 377 SSPPRKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGK 436
Query: 123 EAEKGDGEDNKQSESKIDEPVAVEAASSEPEKG 155
K G + ++S S +P VE + SE +KG
Sbjct: 437 -VTKHKGTEKRESPSPAPKPRKVELSESEEDKG 468
>sp|P45481|CBP_MOUSE CREB-binding protein OS=Mus musculus GN=Crebbp PE=1 SV=3
Length = 2441
Score = 32.0 bits (71), Expect = 9.3, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 87 TPATTEPTKT-VSPAATELLESSENKVSVDANNDAGKEAEKGDGEDNKQSESKIDEPVAV 145
TP T+P T +S AA S +N+V ++ + + + + G D E K + V
Sbjct: 951 TPVHTQPPGTPLSQAAA----SIDNRVPTPSSVTSAETSSQQPGPDVPMLEMKTE----V 1002
Query: 146 EAASSEPEKGEDESSKQTESKNEPASADAAGKKSSDDKENGAEKSEVDNGK 196
+ +EPE E + ++E E + K+ +D E +E EV+ K
Sbjct: 1003 QTDDAEPEPTESKGEPRSEMMEEDLQGSSQVKEETDTTEQKSEPMEVEEKK 1053
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.301 0.120 0.314
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,113,393
Number of Sequences: 539616
Number of extensions: 6178643
Number of successful extensions: 41418
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 2398
Number of HSP's that attempted gapping in prelim test: 27722
Number of HSP's gapped (non-prelim): 10240
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 62 (28.5 bits)