Query 014916
Match_columns 416
No_of_seqs 159 out of 621
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 01:19:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00835 RanBD Ran-binding doma 100.0 3E-34 6.6E-39 247.7 14.8 114 300-415 1-118 (122)
2 smart00160 RanBD Ran-binding d 100.0 1.5E-32 3.3E-37 241.1 15.1 118 296-415 6-128 (130)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 5.2E-32 1.1E-36 232.0 13.8 113 301-415 1-117 (122)
4 COG5171 YRB1 Ran GTPase-activa 99.9 1.2E-28 2.5E-33 226.5 5.9 120 295-415 75-198 (211)
5 KOG2724 Nuclear pore complex c 99.9 1.1E-21 2.3E-26 199.5 12.8 114 297-415 369-483 (487)
6 KOG0864 Ran-binding protein RA 99.6 2E-17 4.4E-22 156.8 -1.3 120 295-415 42-168 (215)
7 PF08911 NUP50: NUP50 (Nucleop 99.6 8E-17 1.7E-21 129.6 1.4 64 12-79 1-72 (72)
8 KOG0866 Ran-binding protein RA 99.2 5.4E-12 1.2E-16 125.8 2.3 106 296-404 143-253 (327)
9 cd00837 EVH1 EVH1 (Enabled, Va 99.1 9.4E-10 2E-14 93.5 12.7 97 309-415 1-101 (104)
10 PF00568 WH1: WH1 domain; Int 98.5 3.2E-06 7E-11 72.4 12.9 97 309-415 8-108 (111)
11 cd01207 Ena-Vasp Enabled-VASP- 98.3 5.2E-06 1.1E-10 72.5 10.5 97 309-415 1-104 (111)
12 cd01206 Homer Homer type EVH1 98.0 2.4E-05 5.3E-10 68.3 8.9 97 309-415 3-104 (111)
13 smart00461 WH1 WASP homology r 97.4 0.0024 5.2E-08 54.8 11.6 97 309-415 3-103 (106)
14 KOG2724 Nuclear pore complex c 97.0 0.013 2.9E-07 61.5 13.5 46 11-60 2-47 (487)
15 PF08553 VID27: VID27 cytoplas 92.3 1.5 3.4E-05 49.8 12.4 98 309-414 247-348 (794)
16 cd01205 WASP WASP-type EVH1 do 91.7 5.5 0.00012 34.9 12.5 95 310-415 5-102 (105)
17 PF06058 DCP1: Dcp1-like decap 84.6 18 0.00039 32.1 11.2 94 310-415 21-119 (122)
18 KOG4590 Signal transduction pr 82.7 1.3 2.8E-05 46.9 3.8 80 325-414 8-93 (409)
19 KOG3671 Actin regulatory prote 82.0 1.9 4.1E-05 46.7 4.7 87 318-415 46-136 (569)
20 KOG0866 Ran-binding protein RA 52.3 5.6 0.00012 41.1 0.5 71 309-384 242-314 (327)
21 PF15411 PH_10: Pleckstrin hom 46.9 1.5E+02 0.0033 26.1 8.6 22 393-414 95-116 (116)
22 COG5167 VID27 Protein involved 40.6 1.7E+02 0.0037 32.9 9.4 97 310-414 229-328 (776)
23 PF11531 CARM1: Coactivator-as 36.4 3.1E+02 0.0067 24.7 8.8 51 356-415 50-100 (114)
24 PF07933 DUF1681: Protein of u 29.0 1.7E+02 0.0037 27.6 6.3 102 309-415 3-119 (160)
25 PHA02095 hypothetical protein 25.4 1.3E+02 0.0028 25.3 4.3 68 348-416 1-77 (84)
26 PF07576 BRAP2: BRCA1-associat 24.7 1E+02 0.0022 27.1 3.9 21 394-414 54-74 (110)
27 KOG0864 Ran-binding protein RA 21.3 15 0.00032 35.5 -2.2 118 216-341 91-211 (215)
No 1
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=3e-34 Score=247.73 Aligned_cols=114 Identities=43% Similarity=0.718 Sum_probs=106.1
Q ss_pred cccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccC--
Q 014916 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-- 375 (416)
Q Consensus 300 Vev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~d-- 375 (416)
|+|.||||+|++||++|||||+|++ ++|+|||+|+||||++++ ++++|||||+++++||||||+|+++|+++++.
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~-~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~ 79 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKD-TGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNS 79 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCC-CCcEEEEEEeCCccEEEEeeEecCCcEEeecCCC
Confidence 5799999999999999999999987 899999999999999986 89999999999999999999999999999987
Q ss_pred CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 376 KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 376 kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.++|+|+|++. .++++++++|+|||+++++|++|+.+|+
T Consensus 80 ~k~~~~~~~d~-~~~~~~~~~~~lrfk~~~~a~~f~~~~~ 118 (122)
T cd00835 80 DKSIVWAAMDF-SDDEPKPETFAIRFKTEEIADEFKEAIE 118 (122)
T ss_pred CcEEEEEeeec-CCCCCcEEEEEEEECCHHHHHHHHHHHH
Confidence 79999998864 4445779999999999999999999986
No 2
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=1.5e-32 Score=241.12 Aligned_cols=118 Identities=29% Similarity=0.594 Sum_probs=106.8
Q ss_pred CCcccccccCcccceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCC-CceEEEEEecccceEEeccccCCCceec
Q 014916 296 SMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNAT-GRARLLMRARGNYRLILNASLYPDMKLT 372 (416)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt-~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~ 372 (416)
.|++|++.||||+|++||++|||||+|+ ++.|++||+|.||||++++ + +++|||||+++++||||||+|+++|++.
T Consensus 6 ~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~-~~~~~RivmR~~~~~kv~lN~~i~~~~~~~ 84 (130)
T smart00160 6 PLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKD-NGGKVRIVMRRDGVLKVCANHPIFKSMTLK 84 (130)
T ss_pred cCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCC-CCCeEEEEEEECCCceEEeccEecCCcEEe
Confidence 4678999999999999999999999998 4799999999999999987 6 9999999999999999999999999999
Q ss_pred ccC--CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 373 NMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 373 ~~d--kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.+. .+.|+|++.+ ++++..++++|+|||+++++|++|+++|+
T Consensus 85 ~~~~~~~~~~~~~~d-~~d~~~~~~~~~irfk~~e~a~~f~~~~~ 128 (130)
T smart00160 85 PLAGSNRALKWTPED-FADDIPKLVLYAVRFKTKEEADSFKNIFE 128 (130)
T ss_pred ecCCCcceEEEeeee-cCCCCCceEEEEEEeCCHHHHHHHHHHHH
Confidence 764 4678887654 45566789999999999999999999986
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=99.98 E-value=5.2e-32 Score=232.04 Aligned_cols=113 Identities=34% Similarity=0.656 Sum_probs=98.6
Q ss_pred ccccCcccceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccC--C
Q 014916 301 VVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD--K 376 (416)
Q Consensus 301 ev~TGEEnEevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~d--k 376 (416)
+|+||||+|++||++|||||+|. +++|++||+|+|||+++++ ++++|||||+++++||||||+|+++|+++++. .
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~-~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~ 79 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKE-TGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSE 79 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccC-CcceEEEEEEcccCceeEEEEecCCceecccccCC
Confidence 58999999999999999999997 4799999999999999987 79999999999999999999999999998764 5
Q ss_pred ccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 377 KGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 377 ksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+++.|++.+. .+..+++.+|+|||++++.|++|+++|+
T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~irf~~~e~a~~f~~~i~ 117 (122)
T PF00638_consen 80 KSLVWTAIDY-ADEEGKPETYLIRFKSAEDADEFKKKIE 117 (122)
T ss_dssp TEEEEEEEEC-TTSSSEEEEEEEE-SSHHHHHHHHHHHH
T ss_pred cEEEEEeccc-cCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 6788887654 4556789999999999999999999986
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.2e-28 Score=226.51 Aligned_cols=120 Identities=29% Similarity=0.519 Sum_probs=112.8
Q ss_pred CCCcccccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceec
Q 014916 295 PSMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLT 372 (416)
Q Consensus 295 P~l~eVev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~ 372 (416)
..++.|.+.|-||+|.+||.+|||||+|+. +.|+|||.|+++|++|+. +++.||+||||+++|||+||.|+|.|+++
T Consensus 75 V~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkk-tnk~ri~MrRDktlklcaNH~i~Pe~kl~ 153 (211)
T COG5171 75 VELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKK-TNKARITMRRDKTLKLCANHFINPEFKLQ 153 (211)
T ss_pred HHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccc-cCceEEEEeechhhhhhhhhccCcceecc
Confidence 357889999999999999999999999984 799999999999999997 99999999999999999999999999999
Q ss_pred cc--CCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 373 NM--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 373 ~~--dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
++ .+++|+|+|..+..+++.+.++|+|||.+.+.++.|+.-++
T Consensus 154 PnvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefe 198 (211)
T COG5171 154 PNVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFE 198 (211)
T ss_pred CCCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHH
Confidence 86 37999999999999999999999999999999999998765
No 5
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.1e-21 Score=199.48 Aligned_cols=114 Identities=21% Similarity=0.379 Sum_probs=98.3
Q ss_pred CcccccccCcccceeEEEEeeeEEEeccCCccccceeEEEEEeecCCCCceEEEEEeccc-ceEEeccccCCCceecccC
Q 014916 297 MQEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMD 375 (416)
Q Consensus 297 l~eVev~TGEEnEevLFs~RaKLF~f~d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt-~KVlLN~~I~~~Mkv~~~d 375 (416)
+++|++..- -+++.+|+.|||+|++.+++|++||||+|||.... .++..||+|.+.. ++||||.+|+++|++++++
T Consensus 369 ppkve~~ev-~edda~ysKkckvfykKdKEf~dkGvgtl~lkp~~--~~k~qlLvradtnlGnilLN~Ll~kgMkctr~g 445 (487)
T KOG2724|consen 369 PPKVETVEV-QEDDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPND--RGKFQLLVRADTNLGNILLNSLLNKGMKCTRVG 445 (487)
T ss_pred CCeeEeecc-cCccchhccccceEEEecccccccccceeeccccc--ccceeeeehhccchhHHHHHHhhcCCCcceecc
Confidence 345544333 33589999999999999999999999999999987 3899999999965 4699999999999999999
Q ss_pred CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 376 KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 376 kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
++.|+|.|+..... ..+.+||||||+++.|++|.++|.
T Consensus 446 knnvlIvcvp~~e~--t~p~TmLIRvktad~aD~L~~kI~ 483 (487)
T KOG2724|consen 446 KNNVLIVCVPPSES--TEPATMLIRVKTADGADKLTDKIL 483 (487)
T ss_pred CCceEEEEeCCccc--ccceeEEEEecccchHHHHHHHHH
Confidence 99999999974333 568999999999999999999873
No 6
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2e-17 Score=156.84 Aligned_cols=120 Identities=27% Similarity=0.479 Sum_probs=103.8
Q ss_pred CCCcccccccCcccceeEEEEee-eEEEecc--CCccccceeEEEEEeecCCCCceEEEEEeccc-ceEEeccccCCCce
Q 014916 295 PSMQEVVVETGEENEKVVFSADS-VLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMK 370 (416)
Q Consensus 295 P~l~eVev~TGEEnEevLFs~Ra-KLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt-~KVlLN~~I~~~Mk 370 (416)
..+.++.+.|+++.|.+||..|+ +||+|.. ++|++||+|.++|++|++ ++..|+|||+|.+ ++||+||+|++.|+
T Consensus 42 ~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~-~g~~r~~m~rdst~~~v~sn~~~~~~~~ 120 (215)
T KOG0864|consen 42 EELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKD-TGSTRDLMRRDSTKLKVCSNHFIGPSFK 120 (215)
T ss_pred ccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCC-CCcceeeeeecccchhhcccccccCccc
Confidence 34566999999999999999996 9999974 799999999999999996 9999999999999 89999999999999
Q ss_pred ecccC--CccEEEEeeccCCCCCccceEEEEEeCCHHH-HHHHHHHhh
Q 014916 371 LTNMD--KKGITFACINSATEGKSGLSTFALKFRDASI-VEEFQTAVA 415 (416)
Q Consensus 371 v~~~d--kksV~ft~vn~~sEgk~kl~tylLRFKtaE~-AdeFkkaIE 415 (416)
++++. .++++|.+..+..++..+..+|+|||.+.+. ..-|...|+
T Consensus 121 ~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~~~~e 168 (215)
T KOG0864|consen 121 LEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFKEKIE 168 (215)
T ss_pred ccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhHhhhh
Confidence 99863 5567775565666777789999999999888 677766654
No 7
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex. Nucleoporin 50 kDa (NUP50) acts as a cofactor for the importin-alpha:importin-beta heterodimer, which in turn allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. The C terminus of NUP50 binds importin-beta through RAN-GTP, the N terminus binds the C terminus of importin-alpha, while a central domain binds importin-beta. NUP50:importin-alpha:importin-beta then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to actively displace nuclear localisation signals from importin-alpha []. NUP2 encodes a non-essential nuclear pore protein that has a central domain similar to those of Nsp1 and Nup1[, ]. Transport of macromolecules between the nucleus and the cytoplasm of eukaryotic cells occurs through the nuclear pore complex (NPC), a large macromolecular complex that spans the nuclear envelope [, , ]. The structure of the vertebrate NPC has been studied extensively; recent reviews include [, , , ]. The yeast NPC shares several features with the vertebrate NPC, despite being smaller and less elaborate [, ]. Many yeast nuclear pore proteins, or nucleoporins, have been identified by a variety of genetic approaches [, , , ]. nup2 mutants show genetic interactions with nsp1 and nup1 conditional alleles [, ]. Nup1 interacts with the nuclear import factor Srp1 [] and with the small GTPase Ran (encoded by GSP1) [].; GO: 0005643 nuclear pore; PDB: 3TJ3_D 1UN0_D 2C1T_D 2C1M_B.
Probab=99.62 E-value=8e-17 Score=129.56 Aligned_cols=64 Identities=44% Similarity=0.672 Sum_probs=18.8
Q ss_pred cccccccccccCCCCCCCcccchhhccccchhchHHHHhcccEeeeccCC--------CCCCCCCCCCcceeecCC
Q 014916 12 KKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQ--------TASTPSSNPFAGIRLVPS 79 (416)
Q Consensus 12 ~kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~--------~~~~~~~npf~~~~~~~~ 79 (416)
.||+|+.||||||+.. ||+ +.++|+|++||++||++|+|+|+||+. +.+.+..|||+++.+.|+
T Consensus 1 aKR~A~~qlt~dn~d~--ed~--~~e~g~f~~AS~evL~~RkI~k~krr~~~~~~~~~~~~~~~~~~F~g~~~~~~ 72 (72)
T PF08911_consen 1 AKRGADSQLTRDNWDE--EDE--DEEAGTFKRASEEVLAKRKIKKPKRRRAAGASSSASSSSSAFSGFAGFKSPPS 72 (72)
T ss_dssp -----SS---TTTSSS---------------B--HHHHHCS-S-SB--TTT-------------------------
T ss_pred CcccccccccccCccc--ccc--cccCCCcccCCHHHhhcceeccccccccccccCCCCCcCcccCCCcCCCcCCC
Confidence 4999999999999932 333 688999999999999999999998775 222345899999998874
No 8
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.4e-12 Score=125.80 Aligned_cols=106 Identities=30% Similarity=0.550 Sum_probs=92.7
Q ss_pred CCcccccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCC---CCceEEEEEecccceEEeccccCCCce
Q 014916 296 SMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNA---TGRARLLMRARGNYRLILNASLYPDMK 370 (416)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~ked---t~K~RLVMR~Dgt~KVlLN~~I~~~Mk 370 (416)
....||+.+|||+|-++|...||||.|++ ..|.+||.|.|+++.-... +...|||||..+++||+||..||..|.
T Consensus 143 ~~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~ 222 (327)
T KOG0866|consen 143 GLSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQ 222 (327)
T ss_pred cceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHH
Confidence 46789999999999999999999999985 5899999999999987641 246999999999999999999999999
Q ss_pred ecccCCccEEEEeeccCCCCCccceEEEEEeCCH
Q 014916 371 LTNMDKKGITFACINSATEGKSGLSTFALKFRDA 404 (416)
Q Consensus 371 v~~~dkksV~ft~vn~~sEgk~kl~tylLRFKta 404 (416)
.++..++.|++..+.. ++ .+...|+|+++..
T Consensus 223 ~ek~sq~~ir~~a~~~--e~-~~v~vFl~~~~~~ 253 (327)
T KOG0866|consen 223 IEKASQKSIRITAMDT--EG-QGVKVFLISASSK 253 (327)
T ss_pred Hhhhcccceeeccccc--cC-CcceEEEeecccc
Confidence 9999999999998853 33 2578999999744
No 9
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.13 E-value=9.4e-10 Score=93.52 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=85.9
Q ss_pred ceeEEEEeeeEEEecc--CCcccc--ceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEEEee
Q 014916 309 EKVVFSADSVLFEFLD--GSWKER--GKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 309 EevLFs~RaKLF~f~d--~eWKER--GvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
+.+|+..+|.||.++. +.|..+ |+|.|.|.++.. .+.+||+||+-+..+|++|+.|+++|.+....+....|...
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~-~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~ 79 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDST-RNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDD 79 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECC-CCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcC
Confidence 3679999999999975 899999 999999999975 77899999999999999999999999999877777777642
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
-..|-|.|.+.++|+.|.+.|.
T Consensus 80 ---------~~~~GL~F~se~eA~~F~~~v~ 101 (104)
T cd00837 80 ---------NCVYGLNFASEEEAAQFRKKVL 101 (104)
T ss_pred ---------CcEEEEeeCCHHHHHHHHHHHH
Confidence 2479999999999999999885
No 10
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.48 E-value=3.2e-06 Score=72.45 Aligned_cols=97 Identities=13% Similarity=0.196 Sum_probs=83.1
Q ss_pred ceeEEEEeeeEEEec--cC-Cccc-cceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEEEee
Q 014916 309 EKVVFSADSVLFEFL--DG-SWKE-RGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 309 EevLFs~RaKLF~f~--d~-eWKE-RGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
..+|+..+|.||..+ .+ .|.- .+.|.|.|.++.. .+.|||+++.-...++++|+.|+++|.+....+....|..-
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~-~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~ 86 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNS-RRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDD 86 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEET
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECC-CCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeC
Confidence 378999999999995 34 5999 9999999998875 68899999997789999999999999999877777777631
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
-..|-|.|.+.++|..|.+.|+
T Consensus 87 ---------~~~~GLnF~se~eA~~F~~~v~ 108 (111)
T PF00568_consen 87 ---------DCVYGLNFASEEEADQFYKKVQ 108 (111)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHH
T ss_pred ---------CeEEEEecCCHHHHHHHHHHHh
Confidence 1389999999999999999874
No 11
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.32 E-value=5.2e-06 Score=72.50 Aligned_cols=97 Identities=14% Similarity=0.279 Sum_probs=82.8
Q ss_pred ceeEEEEeeeEEEecc--CCcccccee-----EEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEE
Q 014916 309 EKVVFSADSVLFEFLD--GSWKERGKG-----ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 381 (416)
Q Consensus 309 EevLFs~RaKLF~f~d--~eWKERGvG-----~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~f 381 (416)
|..||+.||.+|.+++ +.|.--|-| .+.|..+.. .+-||||=|+-.-.++++|..|+++|.+.........|
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~-~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w 79 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPR-NNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQW 79 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCC-CCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceee
Confidence 5679999999999984 689987775 788887764 78899999997778999999999999999877777777
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 382 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 382 t~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.. + -..|-|-|.++++|..|..+|+
T Consensus 80 ~~-----~----~~v~GLnF~Se~eA~~F~~~v~ 104 (111)
T cd01207 80 RD-----A----RQVYGLNFGSKEDATMFASAML 104 (111)
T ss_pred ec-----C----CeEEeeccCCHHHHHHHHHHHH
Confidence 62 1 2789999999999999999886
No 12
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.05 E-value=2.4e-05 Score=68.29 Aligned_cols=97 Identities=19% Similarity=0.345 Sum_probs=78.6
Q ss_pred ceeEEEEeeeEEEecc---CCccccceeEEEE--EeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEEEe
Q 014916 309 EKVVFSADSVLFEFLD---GSWKERGKGELKV--NVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFAC 383 (416)
Q Consensus 309 EevLFs~RaKLF~f~d---~eWKERGvG~LKI--nk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~ 383 (416)
|..||+.||.+|.|++ +.|.--|-+.++| ..+.. ..-+|||=|.+ .++|||..|.++|++.....+.-.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~-~ntfRIi~~~~--~~~iINc~i~~~~~y~kas~~FhQWr- 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDST-RNVYRIISVGG--TKAIINSTITPNMTFTKTSQKFGQWA- 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCC-CcEEEEEEecC--cEEEEeccccCCcceeeccccccccc-
Confidence 6789999999999985 4899888875554 45543 78999999876 49999999999999999877777765
Q ss_pred eccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 384 INSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 384 vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
|. ---+.|-|-|.+.++++.|...++
T Consensus 79 -----D~-R~~tVyGLnF~Sk~ea~~F~~~f~ 104 (111)
T cd01206 79 -----DS-RANTVYGLGFSSEQQLTKFAEKFQ 104 (111)
T ss_pred -----cc-ccceeeecccCCHHHHHHHHHHHH
Confidence 11 112789999999999999988765
No 13
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=97.44 E-value=0.0024 Score=54.79 Aligned_cols=97 Identities=16% Similarity=0.292 Sum_probs=75.9
Q ss_pred ceeEEEEeeeEEEecc--CCcccccee-EEEEEeec-CCCCceEEEEEecccceEEeccccCCCceecccCCccEEEEee
Q 014916 309 EKVVFSADSVLFEFLD--GSWKERGKG-ELKVNVST-NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 309 EevLFs~RaKLF~f~d--~eWKERGvG-~LKInk~k-edt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
+.+++..++.++.|+. +.|.-.|.| -+.|.... ....-+||+-+..+. +|++|+.|+++|.+.......-.|..
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~~~~Fh~f~~- 80 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQATPTFHQWAD- 80 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeecCCceEEEEe-
Confidence 4567777777776653 689999999 77776543 125678998888654 99999999999999987666666653
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+ -..|-|-|.+.++|..|.+.|.
T Consensus 81 ----~----~~~~GLnF~se~EA~~F~~~v~ 103 (106)
T smart00461 81 ----D----KCVYGLNFASEEEAKKFRKKVL 103 (106)
T ss_pred ----C----CeEEEeecCCHHHHHHHHHHHH
Confidence 1 2679999999999999999885
No 14
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.013 Score=61.48 Aligned_cols=46 Identities=43% Similarity=0.446 Sum_probs=38.0
Q ss_pred ccccccccccccCCCCCCCcccchhhccccchhchHHHHhcccEeeeccC
Q 014916 11 SKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRN 60 (416)
Q Consensus 11 s~kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~ 60 (416)
+-||.|...|+--+..+ +++ -++-|+|.-|.+|+|.+|.|+|.+|+
T Consensus 2 ~~krmA~s~l~~~nwdl--E~E--fle~gnf~~aeee~lktr~ikka~r~ 47 (487)
T KOG2724|consen 2 SEKRMAMSRLRDKNWDL--EAE--FLEVGNFYFAEEEHLKTRGIKKAYRD 47 (487)
T ss_pred hhhhhhhhhhhhcccch--hhh--HHHhccccccchhhhcchhhhhHHhh
Confidence 56899998888777666 333 47799999999999999999999766
No 15
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.31 E-value=1.5 Score=49.79 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=69.5
Q ss_pred ceeEEEEeeeEEEec--cCCcccccee-EEEEEeecCCCCceEEEEEecccceEEeccccCCCceeccc-CCccEEEEee
Q 014916 309 EKVVFSADSVLFEFL--DGSWKERGKG-ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM-DKKGITFACI 384 (416)
Q Consensus 309 EevLFs~RaKLF~f~--d~eWKERGvG-~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~-dkksV~ft~v 384 (416)
...++...|+||.|+ .+.|.-..-. .++|.+. ++.-..++-.+..+.+|++.|.+.|.+.-. ...+.+|...
T Consensus 247 ~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~----~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e~lSFiFN~~ 322 (794)
T PF08553_consen 247 GEILASESAELYLYDPPTGKFVLQDSSVTAKIIET----GKWEYWLQIEGKDKIWLGQPVSSDMNPVFNFEHLSFIFNYY 322 (794)
T ss_pred cceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc----CCeEEEEEEecCCceEEeeeccCCcCeEEEcceeEEEEEeE
Confidence 348999999999997 4788777533 2555543 344455555666678999999999998753 2344555544
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAV 414 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaI 414 (416)
.. + +..-.|||||++.+.-..|...+
T Consensus 323 ~~--~--~~~~sw~lkF~~~~~~~~F~~~~ 348 (794)
T PF08553_consen 323 TE--D--GSAYSWLLKFKDQEDYERFQEKF 348 (794)
T ss_pred cC--C--CceEEEEEEeCCHHHHHHHHHHH
Confidence 22 2 24678999999999999998765
No 16
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=91.67 E-value=5.5 Score=34.87 Aligned_cols=95 Identities=21% Similarity=0.273 Sum_probs=70.9
Q ss_pred eeEEEEeeeEEEecc--CCccccceeEEEEEeecC-CCCceEEEEEecccceEEeccccCCCceecccCCccEEEEeecc
Q 014916 310 KVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386 (416)
Q Consensus 310 evLFs~RaKLF~f~d--~eWKERGvG~LKInk~ke-dt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~ 386 (416)
.+|-..=+.||.-.. +.|.-...|.|=|-+... -+--.||+=... .+++..+-|+.+|.+....+....|..
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~--~~v~weqElY~~f~y~~~r~fFhtFe~--- 79 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKA--NRIIWEQELYDNFEYQQPRPFFHTFEG--- 79 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccC--CcEEEEEEcccCcEEccCCCcEEEEec---
Confidence 355666678998743 899999999999987642 123445555543 789999999999999875444444442
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 387 ATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
| -.++-|.|-+.++|..|+++|.
T Consensus 80 --d----~c~~GL~Fade~EA~~F~k~v~ 102 (105)
T cd01205 80 --D----DCVVGLNFADETEAAEFRKKVL 102 (105)
T ss_pred --c----CcEEEEEECCHHHHHHHHHHHH
Confidence 2 2678999999999999999885
No 17
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=84.58 E-value=18 Score=32.11 Aligned_cols=94 Identities=15% Similarity=0.321 Sum_probs=62.8
Q ss_pred eeEEE-EeeeEEEec--cCCccccce-eEEEEEeecCCCCceEEE-EEecccceEEeccccCCCceecccCCccEEEEee
Q 014916 310 KVVFS-ADSVLFEFL--DGSWKERGK-GELKVNVSTNATGRARLL-MRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 310 evLFs-~RaKLF~f~--d~eWKERGv-G~LKInk~kedt~K~RLV-MR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
.+|.. ..|-||.|+ .++|...|+ |.|.|-+... .-+++|+ |=|.+..-+++. |.+.|.++.. +..+.+-
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~-~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~-~~~l~~r-- 94 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSS-SPRYGLIVLNRRSTENFVEP--ITPDLDFELQ-DPYLIYR-- 94 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEET-TS-ECEEEEESSSS--EEEE--E-SGGGEEEE-TTEEEEE--
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeec-ccceEEEEecCCCCCceeee--cCCCcEEEEe-CCEEEEE--
Confidence 34444 368999997 589999997 8899875443 3455554 444444446655 7788888764 4566554
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+ + .-..|-|=|-+.++++++.+.|+
T Consensus 95 ~---~---~~~I~GiWf~~~~d~~ri~~~l~ 119 (122)
T PF06058_consen 95 N---D---NQEIYGIWFYDDEDRQRIYNLLQ 119 (122)
T ss_dssp E---T---TTEEEEEEESSHHHHHHHHHHHH
T ss_pred c---C---CceEEEEEEEeHHHHHHHHHHHH
Confidence 1 1 12679999999999999988775
No 18
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=82.75 E-value=1.3 Score=46.93 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=61.8
Q ss_pred CCcccccee-----EEEEEeecCCCCceEEEEEeccc-ceEEeccccCCCceecccCCccEEEEeeccCCCCCccceEEE
Q 014916 325 GSWKERGKG-----ELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFA 398 (416)
Q Consensus 325 ~eWKERGvG-----~LKInk~kedt~K~RLVMR~Dgt-~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~~sEgk~kl~tyl 398 (416)
+.|.-.|.| .|+|..|.. ..-+|||-|.-+- .-|+||..|.++++|......+-.|-. + -..|-
T Consensus 8 k~W~p~g~g~~~~s~V~~~~h~~-~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatptFHqWR~-----a----rqvyG 77 (409)
T KOG4590|consen 8 KGWLPAGGGGAALSKVRIYHHTS-GNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPTFHQWRD-----A----RQVYG 77 (409)
T ss_pred cccccccccCcccceeEEEeecc-CCceeEEeeecccCcccccccccccCcceeecccchhhhhh-----h----hhhhc
Confidence 567766644 456666665 7899999999877 779999999999999886555444321 1 47799
Q ss_pred EEeCCHHHHHHHHHHh
Q 014916 399 LKFRDASIVEEFQTAV 414 (416)
Q Consensus 399 LRFKtaE~AdeFkkaI 414 (416)
|.|.+.++|..|..++
T Consensus 78 LnFqs~~DA~~Fa~~~ 93 (409)
T KOG4590|consen 78 LTFQSEQDARAFARGV 93 (409)
T ss_pred ccccChhhhhhhhhhh
Confidence 9999999999998765
No 19
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=82.00 E-value=1.9 Score=46.75 Aligned_cols=87 Identities=21% Similarity=0.347 Sum_probs=59.1
Q ss_pred eEEEec-c-CCccccce-eEEEEEeecC-CCCceEEEEEecccceEEeccccCCCceecccCCccEEEEeeccCCCCCcc
Q 014916 318 VLFEFL-D-GSWKERGK-GELKVNVSTN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSG 393 (416)
Q Consensus 318 KLF~f~-d-~eWKERGv-G~LKInk~ke-dt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~~sEgk~k 393 (416)
+||.-. + +.|.-+|. |.|-|-+.-. -..-.||+...+ .|||--+-||.+|.|..- +. .|.+|. .|
T Consensus 46 qLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q~--r~-ffhtFe--gd---- 114 (569)
T KOG3671|consen 46 QLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQP--RT-FFHTFE--GD---- 114 (569)
T ss_pred HHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceeccC--cc-ceeeec--cc----
Confidence 355433 2 48999999 9988876542 023445555544 459999999999999872 32 233332 11
Q ss_pred ceEEEEEeCCHHHHHHHHHHhh
Q 014916 394 LSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 394 l~tylLRFKtaE~AdeFkkaIE 415 (416)
-.+.-|-|-+.++|+.|+++|+
T Consensus 115 dc~aGLnF~~E~EA~~F~k~V~ 136 (569)
T KOG3671|consen 115 DCQAGLNFASEEEAQKFRKKVQ 136 (569)
T ss_pred cceeeecccCHHHHHHHHHHHH
Confidence 2467788999999999999885
No 20
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.33 E-value=5.6 Score=41.06 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=56.8
Q ss_pred ceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEEEee
Q 014916 309 EKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 309 EevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
+.-||-.+++.|+++ .+.+..|||+.|+++..++ ..+.|++.|-++...+++| .+.-+...+..+|.+...
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~-~~kak~~~~~e~s~~~l~~----~d~d~d~~~~~~v~v~a~ 314 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERE-CLKAKMPAPEEGSAPLLKE----DDSDDDLVGAPSVAVAAG 314 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchh-hhhcccCCCcccccccccc----ccchhhhcCCcceeeecc
Confidence 678999999999997 4899999999999998875 6699999999999999998 333334445556655443
No 21
>PF15411 PH_10: Pleckstrin homology domain
Probab=46.94 E-value=1.5e+02 Score=26.13 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=18.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHh
Q 014916 393 GLSTFALKFRDASIVEEFQTAV 414 (416)
Q Consensus 393 kl~tylLRFKtaE~AdeFkkaI 414 (416)
++..|.|||++.+..+....+|
T Consensus 95 e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 95 ELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCceEEEEeCCHHHHHHHHhhC
Confidence 4789999999999998887764
No 22
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=40.60 E-value=1.7e+02 Score=32.88 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=66.8
Q ss_pred eeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccC-CccEEEEeecc
Q 014916 310 KVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-KKGITFACINS 386 (416)
Q Consensus 310 evLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~d-kksV~ft~vn~ 386 (416)
+.+|..-+-||+|+. ..|-. ---.+++-.- +++++-..+|-.+--+++|-..|.+.|.+.--- .-...|..+.
T Consensus 229 e~~~~~~~~l~~yd~~~e~Fil-q~p~Vkv~i~--d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwny~~- 304 (776)
T COG5167 229 ETLYSKNGVLSRYDTATERFIL-QKPHVKVVIV--DDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWNYME- 304 (776)
T ss_pred ceeeeecceEEeecchhheeee-cCCceEEEEE--ecCCeEEEEEEecccceeehheeccccCcceecccceeeeeeec-
Confidence 678999999999974 21110 0112233322 378999999999888899999999999887532 2334555443
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHh
Q 014916 387 ATEGKSGLSTFALKFRDASIVEEFQTAV 414 (416)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeFkkaI 414 (416)
+ ...-.|+|||.+.....+|..++
T Consensus 305 --~--n~~~s~~LrF~d~~~~~qF~~~~ 328 (776)
T COG5167 305 --D--NVFHSFSLRFLDNLDFLQFLSKY 328 (776)
T ss_pred --c--cchheeeeeecchhHHHHHHHHH
Confidence 2 23678999999998888887654
No 23
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=36.42 E-value=3.1e+02 Score=24.73 Aligned_cols=51 Identities=8% Similarity=0.223 Sum_probs=37.8
Q ss_pred cceEEeccccCCCceecccCCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 356 NYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 356 t~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
..-.++-..|.++..+-+.++.++.|+. . ..+.||+|.+..+-..|+..|+
T Consensus 50 ~~~cvfkc~VsreTEccRVG~~SfliTl-g--------~nSlLl~F~s~~df~~F~n~lk 100 (114)
T PF11531_consen 50 ECVCVFKCTVSRETECCRVGKQSFLITL-G--------CNSLLLQFASPADFSSFHNILK 100 (114)
T ss_dssp T--EEEEEEEETTSEEEEETTTEEEEEE-T--------TEEEEEE-SSHHHHHHHHHHHC
T ss_pred CCEEEEEEEEcCCcceeEecceEEEEEe-c--------CCeEEEEecCHHHHHHHHHHHH
Confidence 3336666777788888888888877764 1 3679999999999999998875
No 24
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=28.95 E-value=1.7e+02 Score=27.56 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=51.5
Q ss_pred ceeEEEE-eeeEEEecc---------CCcc---ccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccC
Q 014916 309 EKVVFSA-DSVLFEFLD---------GSWK---ERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD 375 (416)
Q Consensus 309 EevLFs~-RaKLF~f~d---------~eWK---ERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~d 375 (416)
|.+||.+ .|.+|+.-- ..|. ..=.|-|||....+ ..+++|++-...++.|...+++.....+.++-
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~-~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~ 81 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGD-KCKVDIRLEDPSTGELFAQCPYDDYAAVEPVI 81 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SS-SE--EEEEE-SS--SS-EEEEE-SS--EEE-T
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCC-eeEEEEEecCCCCcceEEECcccCCCceEEee
Confidence 4567765 478888741 2564 34478899997654 44447777777788899999998886666542
Q ss_pred --CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 376 --KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 376 --kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.++..+-+.+. .+.-...=|=|.+-.+|=+|.-+|.
T Consensus 82 DSSRYFvlRv~d~----~Gr~AfiGiGF~eRsdAFDF~vaLq 119 (160)
T PF07933_consen 82 DSSRYFVLRVQDP----SGRHAFIGIGFRERSDAFDFNVALQ 119 (160)
T ss_dssp T--S-EEEEEEET----TTEEEEEEEE-S-HHHHHHHHHHHH
T ss_pred cccceEEEEEEcC----CCcEEEEEEeeccccccccHHHHHH
Confidence 45555554432 2345566688888888888877663
No 25
>PHA02095 hypothetical protein
Probab=25.43 E-value=1.3e+02 Score=25.30 Aligned_cols=68 Identities=10% Similarity=0.199 Sum_probs=41.6
Q ss_pred EEEEEecccce-EEeccccCCCceeccc--CCccEEEEeeccC----CC--CCccceEEEEEeCCHHHHHHHHHHhhC
Q 014916 348 RLLMRARGNYR-LILNASLYPDMKLTNM--DKKGITFACINSA----TE--GKSGLSTFALKFRDASIVEEFQTAVAF 416 (416)
Q Consensus 348 RLVMR~Dgt~K-VlLN~~I~~~Mkv~~~--dkksV~ft~vn~~----sE--gk~kl~tylLRFKtaE~AdeFkkaIE~ 416 (416)
|++.-+.|..+ |||||.-+-.-+++.. -..+|.|+.++.. +| ..-.--+.+|-|.++ +++++...|++
T Consensus 1 ~~~~f~~g~~~p~ll~~~s~~~g~iq~~yv~ng~wefsrvdgilciegd~~~pm~~f~~ii~vp~~-~~~dyn~ii~w 77 (84)
T PHA02095 1 RIAAFRKGGTNPVLLNFFSMTEGVIQNGYVENGSWEFSRVDGILCIEGDKEHPMPDFEHIVEVPDE-MAGDYNEIISW 77 (84)
T ss_pred CeeEeccCCCCceEEEEEEeecceeeeeEEecCcEEEEeccEEEEecCCCCCCchhheeeeeCchh-hcccHHHHHHH
Confidence 45555555554 9999999888888752 3456776655321 12 111122567777655 88887777753
No 26
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=24.75 E-value=1e+02 Score=27.05 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.8
Q ss_pred ceEEEEEeCCHHHHHHHHHHh
Q 014916 394 LSTFALKFRDASIVEEFQTAV 414 (416)
Q Consensus 394 l~tylLRFKtaE~AdeFkkaI 414 (416)
.-..||||++.+.|++|+..+
T Consensus 54 rymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 54 RYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred eEEEEEEECCHHHHHHHHHHh
Confidence 446688999999999999875
No 27
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.33 E-value=15 Score=35.51 Aligned_cols=118 Identities=27% Similarity=0.299 Sum_probs=64.1
Q ss_pred CCCCCcccccccCccccccccccCCCcccceeeecCCCCCCCCCCCCC--CcccccccCCCccccCCCCCCccCCCCCCC
Q 014916 216 TDSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTS--ASVFGQVNNGNSSLFNTPATSIASKSEGTT 293 (416)
Q Consensus 216 ~~~~~~fSF~~~ss~~~aFtg~a~tg~SsssFsFG~~~~~~s~~~t~s--~~~FG~~s~g~s~~FG~~~~s~~~ksE~~~ 293 (416)
......-++.+.+++. .++....++.++|.++.+........-.. -..++........+|.....+ -+..
T Consensus 91 ~~~g~~r~~m~rdst~---~~v~sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~-----s~~~ 162 (215)
T KOG0864|consen 91 KDTGSTRDLMRRDSTK---LKVCSNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVES-----SGKA 162 (215)
T ss_pred CCCCcceeeeeecccc---hhhcccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcc-----cchh
Confidence 3345556777877773 25667777788999987766544211001 122222222222222111100 0112
Q ss_pred CCCCcccccccCcccce-eEEEEeeeEEEeccCCccccceeEEEEEeec
Q 014916 294 FPSMQEVVVETGEENEK-VVFSADSVLFEFLDGSWKERGKGELKVNVST 341 (416)
Q Consensus 294 ~P~l~eVev~TGEEnEe-vLFs~RaKLF~f~d~eWKERGvG~LKInk~k 341 (416)
|+..-+.....++++|. .-+....+-+.|..+.|++||.|.+++++..
T Consensus 163 f~~~~e~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (215)
T KOG0864|consen 163 FKEKIEEAKEGIEENEKNQESSKNAHNLEYLKGGWKERGKGEPKSNRSA 211 (215)
T ss_pred hHhhhhhhhhhhhhhhhhhccccccccchhhhhhHHhhccccccccccc
Confidence 33222333345566666 4455556667777899999999999987654
Done!