Query 014916
Match_columns 416
No_of_seqs 159 out of 621
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 03:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_B RAN-specific GTPase-act 100.0 1E-36 3.5E-41 270.3 13.9 119 296-415 9-131 (140)
2 1rrp_B Nuclear pore complex pr 100.0 1E-35 3.5E-40 260.9 16.0 122 292-415 4-129 (134)
3 3m1i_B RAN-specific GTPase-act 100.0 1.6E-35 5.5E-40 274.7 14.4 120 295-415 59-182 (191)
4 1k5d_B RAN-specific GTPase-act 100.0 7.4E-35 2.5E-39 272.1 14.4 119 296-415 32-156 (201)
5 1xke_A RAN-binding protein 2; 100.0 2.6E-34 8.7E-39 251.1 14.2 111 303-415 1-115 (130)
6 2crf_A RAN binding protein 3; 100.0 7.1E-34 2.4E-38 254.3 14.8 121 292-415 9-134 (150)
7 2y8g_A Ranbp3-B, RAN-binding p 100.0 3.5E-34 1.2E-38 253.0 11.2 116 297-415 2-122 (138)
8 2ec1_A Nucleoporin 50 kDa; ran 100.0 6.9E-34 2.4E-38 247.4 12.2 113 301-415 4-120 (125)
9 3n7c_A ABR034WP; nuclear pore 100.0 7.9E-34 2.7E-38 248.8 10.0 111 300-415 1-116 (130)
10 2c1m_B Nucleoporin 50 kDa; pro 99.5 1.1E-14 3.9E-19 107.3 2.5 44 13-60 3-46 (46)
11 1qc6_A EVH1 domain from ENA/VA 99.4 1E-12 3.5E-17 114.6 11.9 98 308-415 2-106 (130)
12 1un0_C Nucleoporin NUP2; nucle 99.4 5.2E-14 1.8E-18 105.8 2.4 47 13-62 3-49 (51)
13 3tj3_C Nuclear pore complex pr 99.3 3.5E-13 1.2E-17 115.6 2.6 60 12-75 7-67 (114)
14 1ddw_A GLGF-domain protein hom 99.0 4.5E-09 1.5E-13 91.0 13.2 98 308-415 2-104 (120)
15 1i2h_A PSD-ZIP45(homer-1C/VESL 98.9 1.3E-08 4.4E-13 93.0 12.0 98 308-415 7-109 (168)
16 1egx_A VAsp, vasodilator-stimu 98.6 2E-07 7E-12 79.9 11.3 97 309-415 3-107 (115)
17 1evh_A WH1 domain, protein (ME 98.6 2.9E-07 1E-11 78.5 11.8 98 308-415 2-105 (112)
18 1xod_A Spred1; sprouty, EVH1, 98.4 1.1E-06 3.7E-11 75.8 10.2 98 309-415 3-109 (118)
19 2jp2_A Spred-2, sprouty-relate 98.4 3.2E-06 1.1E-10 73.8 11.3 100 307-415 10-118 (126)
20 3syx_A Sprouty-related, EVH1 d 97.5 0.00089 3E-08 58.9 11.6 95 311-414 12-115 (130)
21 1mke_A WIP - N-WAsp, fusion pr 96.6 0.026 8.8E-07 50.7 12.1 94 310-415 41-137 (152)
22 2ifs_A N-WAsp, wiskott-aldrich 96.3 0.02 7E-07 52.2 10.0 94 310-415 58-154 (169)
23 2oqb_A Histone-arginine methyl 84.1 5.8 0.0002 34.3 9.0 50 357-415 54-103 (117)
24 2lyd_A Decapping protein 1; DC 73.4 45 0.0016 28.9 12.5 94 310-415 30-128 (134)
25 2qkl_A DCP1 protein, SPBC3B9.2 71.0 50 0.0017 28.4 11.5 93 310-415 25-122 (127)
26 1o6o_D Nucleoporin NSP1; nucle 67.1 4.7 0.00016 34.9 3.8 48 217-270 34-82 (119)
27 1o6o_D Nucleoporin NSP1; nucle 64.4 9.3 0.00032 33.0 5.1 59 218-282 16-83 (119)
28 1tqz_A Necap1; endocytosis, st 36.4 86 0.0029 27.5 6.8 102 307-415 6-124 (133)
29 1q67_A Decapping protein invol 22.7 5E+02 0.017 24.7 10.1 31 310-340 36-70 (231)
30 1f59_C NSP1P, FXFG nucleoporin 22.0 46 0.0016 21.6 1.8 12 218-229 4-15 (28)
No 1
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=100.00 E-value=1e-36 Score=270.30 Aligned_cols=119 Identities=29% Similarity=0.533 Sum_probs=101.7
Q ss_pred CCcccccccCcccceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecc
Q 014916 296 SMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTN 373 (416)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~ 373 (416)
.|++|++.||||+|++||++|||||+|+ +++|+|||+|+||||+|++ ++++|||||+|+++||||||+|+++|++++
T Consensus 9 ~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~-~~k~RllmR~d~~~kv~lN~~i~~~m~~~~ 87 (140)
T 4hat_B 9 HLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLKP 87 (140)
T ss_dssp ----------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCBC
T ss_pred EcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCC-CCeEEEEEEecCcceEEEEeEecCCeEEeE
Confidence 4689999999999999999999999997 4789999999999999986 899999999999999999999999999998
Q ss_pred c--CCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 374 M--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 374 ~--dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+ ++++|+|+|..+++|+++++++|+|||++++.|++|+++|+
T Consensus 88 ~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~e 131 (140)
T 4hat_B 88 NVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFE 131 (140)
T ss_dssp CTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 7 35789999877777877889999999999999999999986
No 2
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=1e-35 Score=260.87 Aligned_cols=122 Identities=28% Similarity=0.496 Sum_probs=111.1
Q ss_pred CCCCCCcccccccCcccceeEEEEeeeEEEec--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCc
Q 014916 292 TTFPSMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDM 369 (416)
Q Consensus 292 ~~~P~l~eVev~TGEEnEevLFs~RaKLF~f~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~M 369 (416)
|.++.+++|++.||||+|++||++|||||+|+ +++|+|||+|+||||+|+. ++++|||||+++++||||||+|+++|
T Consensus 4 pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m 82 (134)
T 1rrp_B 4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKT-SGKIRLLMRREQVLKICANHYISPDM 82 (134)
T ss_dssp CSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESS-SCCCEEEEECTTTCCEEECCBCCSSC
T ss_pred cceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECC-CCeEEEEEEEcCCCcEEEEeEecCCc
Confidence 56676679999999999999999999999997 4799999999999999986 89999999999999999999999999
Q ss_pred eecccC--CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 370 KLTNMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 370 kv~~~d--kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+++++. .++|+|++++. .|+.+++++|+|||++++.|++|+++|+
T Consensus 83 ~~~~~~~s~~~~~~~~~d~-~d~~~k~~~~~irfk~~e~A~~f~~~~~ 129 (134)
T 1rrp_B 83 KLTPNAGSDRSFVWHALDY-ADELPKPEQLAIRFKTPEEAALFKCKFE 129 (134)
T ss_dssp CCBCSTTCTTEEEEEEEEC-TTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred eEeecCCCCeEEEEEcccc-cCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 999863 67899999864 4455789999999999999999999986
No 3
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=274.70 Aligned_cols=120 Identities=28% Similarity=0.523 Sum_probs=110.3
Q ss_pred CCCcccccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceec
Q 014916 295 PSMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLT 372 (416)
Q Consensus 295 P~l~eVev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~ 372 (416)
..|++|+|.||||+|++||++|||||+|+. ++|++||+|.||||+|++ ++++|||||+++++||||||+|+++|+|+
T Consensus 59 v~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ke-t~k~RllMR~d~~~kV~LN~~I~~~m~~~ 137 (191)
T 3m1i_B 59 VHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLK 137 (191)
T ss_dssp --CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCB
T ss_pred eecccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCC-CCeEEEEEEecCcceEEEeeecCCCcEEe
Confidence 356899999999999999999999999984 789999999999999986 89999999999999999999999999999
Q ss_pred cc--CCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 373 NM--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 373 ~~--dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
++ ++++|+|+|..+++|+.+++++|+|||+++++|++|+++|+
T Consensus 138 ~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~e 182 (191)
T 3m1i_B 138 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFE 182 (191)
T ss_dssp CCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred ECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHH
Confidence 87 46789999876677877789999999999999999999986
No 4
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=100.00 E-value=7.4e-35 Score=272.09 Aligned_cols=119 Identities=27% Similarity=0.423 Sum_probs=109.1
Q ss_pred CCcccccccCcccceeEEEEeeeEEEe--c--cCCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCcee
Q 014916 296 SMQEVVVETGEENEKVVFSADSVLFEF--L--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKL 371 (416)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RaKLF~f--~--d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv 371 (416)
.|++|+|.||||+|++||++|||||+| + +++|++||+|.||||+|+. ++++|||||+++++||||||+|+++|+|
T Consensus 32 ~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~-t~k~RlvMR~d~~~kV~LN~~I~~~m~~ 110 (201)
T 1k5d_B 32 SLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKE-KGAIRLLMRRDKTLKICANHYITPMMEL 110 (201)
T ss_dssp CCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSS-SCCEEEEEEETTTCCEEEEEECCSSCCC
T ss_pred ccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEcCC-CCcEEEEEEECCcceEEEeeEecCCcee
Confidence 578899999999999999999999999 3 4799999999999999986 8999999999999999999999999999
Q ss_pred ccc--CCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 372 TNM--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 372 ~~~--dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+++ ..++|+|+++.++.|+..++.+|+|||+++++|++|+++|+
T Consensus 111 ~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~e 156 (201)
T 1k5d_B 111 KPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFE 156 (201)
T ss_dssp CBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHH
T ss_pred eecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 986 36788998866667767789999999999999999999985
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=2.6e-34 Score=251.07 Aligned_cols=111 Identities=31% Similarity=0.548 Sum_probs=101.7
Q ss_pred ccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceeccc--CCcc
Q 014916 303 ETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM--DKKG 378 (416)
Q Consensus 303 ~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~--dkks 378 (416)
.||||+|++||++|||||+|++ ++|+|||+|.||||+|++ ++++|||||+|+++||||||+|+++|+++++ +.++
T Consensus 1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~ 79 (130)
T 1xke_A 1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEV-NGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRA 79 (130)
T ss_dssp CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSC
T ss_pred CCCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCC-CCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeE
Confidence 3899999999999999999974 799999999999999986 8999999999999999999999999999986 3678
Q ss_pred EEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 379 ITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 379 V~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
|+|++.+ +.|++.++++|+|||+++++|++|+++|+
T Consensus 80 ~~~~~~d-~~d~~~~~~~~~irfks~e~a~~f~~~~e 115 (130)
T 1xke_A 80 WMWLASD-FSDGDAKLEQLAAKFKTPELAEEFKQKFE 115 (130)
T ss_dssp EEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEecc-cCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 9999864 55666789999999999999999999986
No 6
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=7.1e-34 Score=254.29 Aligned_cols=121 Identities=30% Similarity=0.497 Sum_probs=108.3
Q ss_pred CCCCCCcccccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecC---CCCceEEEEEecccceEEeccccC
Q 014916 292 TTFPSMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN---ATGRARLLMRARGNYRLILNASLY 366 (416)
Q Consensus 292 ~~~P~l~eVev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~ke---dt~K~RLVMR~Dgt~KVlLN~~I~ 366 (416)
+.+|.|++|+|.||||+|++||++|||||+|++ ++|+|||+|+||||+|+. +++++|||||+++++||||||+|+
T Consensus 9 ~~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~ 88 (150)
T 2crf_A 9 ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLW 88 (150)
T ss_dssp SCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECC
T ss_pred ccccCcccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeecc
Confidence 457889999999999999999999999999974 789999999999999872 368999999999999999999999
Q ss_pred CCceecccCCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 367 PDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 367 ~~Mkv~~~dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
++|++..+++++|+|+|++. .+ +++.+|||||+++++|+.|...++
T Consensus 89 ~~m~~~~~~~k~~~~~~~d~-~d--~~~~~~lirfk~~e~a~lf~~~~e 134 (150)
T 2crf_A 89 AQMQIDKASEKSIHITAMDT-ED--QGVKVFLISASSKDTGQLYAALHH 134 (150)
T ss_dssp TTCCEECCSSSEEEEEEEBS-SS--CCEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCceeecCCCCEEEEEeecC-CC--CceEEEEEEECCHHHHHHHHHHHH
Confidence 99999988899999999864 34 348899999999999988876543
No 7
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=100.00 E-value=3.5e-34 Score=252.99 Aligned_cols=116 Identities=29% Similarity=0.495 Sum_probs=92.2
Q ss_pred CcccccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecC---CCCceEEEEEecccceEEeccccCCCcee
Q 014916 297 MQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN---ATGRARLLMRARGNYRLILNASLYPDMKL 371 (416)
Q Consensus 297 l~eVev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~ke---dt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv 371 (416)
|++|+|.||||+|++||++|||||+|++ ++|+|||+|+||||+|+. +++++|||||+++++||||||+|+++|++
T Consensus 2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI 81 (138)
T ss_dssp ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred CCcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence 5789999999999999999999999985 789999999999999973 25899999999999999999999999999
Q ss_pred cccCCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 372 TNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 372 ~~~dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+.+++++|+|+|++. .+ +++.+|+|||+++++|+.|+.+++
T Consensus 82 ~~~~~k~~~~~~~d~-~d--~~~~~~lirfk~~e~a~lf~~~~~ 122 (138)
T 2y8g_A 82 DKASEKSIRITAMDT-ED--QGVKVFLISASSKDTGQLYAALHH 122 (138)
T ss_dssp EEEETTEEEEECCC---C--CCCCEEEEECCHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEEecC-CC--CceEEEEEEECCHHHHHHHHHHHH
Confidence 988899999999864 33 347899999999999988876553
No 8
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=247.39 Aligned_cols=113 Identities=22% Similarity=0.381 Sum_probs=97.4
Q ss_pred ccccCcccceeEEEEeeeEEEeccCCccccceeEEEEEeecCCCCceEEEEEeccc-ceEEeccccCCCceecccCCccE
Q 014916 301 VVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDKKGI 379 (416)
Q Consensus 301 ev~TGEEnEevLFs~RaKLF~f~d~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt-~KVlLN~~I~~~Mkv~~~dkksV 379 (416)
...||||+|++||++|||||+|.+++|+|||+|+||||+++ ++++|||||+|++ +||||||+|+++|++++++++.+
T Consensus 4 ~~~tgEE~E~~lf~~raKLf~~~~~~WkERGvG~lki~~~k--~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~ 81 (125)
T 2ec1_A 4 GSSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTA--NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNV 81 (125)
T ss_dssp ----CCCCCSCSEEEEEEEEEECSSSEEEEEEEEEEEEECS--SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEE
T ss_pred CCcCCccCceeEEEEeeEEEEecCCCcccccEEEEEeeecC--CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcE
Confidence 35799999999999999999999999999999999999987 6899999999986 79999999999999999876666
Q ss_pred EEEeecc-CCCCC--ccceEEEEEeCCHHHHHHHHHHhh
Q 014916 380 TFACINS-ATEGK--SGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 380 ~ft~vn~-~sEgk--~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
++.|++. +.|++ .++++|+|||+++++|++|+++|+
T Consensus 82 ~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~ 120 (125)
T 2ec1_A 82 LIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILL 120 (125)
T ss_dssp EEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHH
Confidence 6556643 23544 469999999999999999999986
No 9
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=100.00 E-value=7.9e-34 Score=248.79 Aligned_cols=111 Identities=32% Similarity=0.495 Sum_probs=88.7
Q ss_pred cccccCcccceeEEEEeeeEEEecc--CCccccceeEEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccC--
Q 014916 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-- 375 (416)
Q Consensus 300 Vev~TGEEnEevLFs~RaKLF~f~d--~eWKERGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~d-- 375 (416)
|+|.||||+|++||++|||||+|++ ++|+|||+|.||||+++++++++|||||+++++|||||++|+++|+++++.
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence 5799999999999999999999974 689999999999999984478999999999999999999999999999875
Q ss_pred -CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 376 -KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 376 -kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.+.|+|+++ +| +++++|+|||+++++|++|+++|+
T Consensus 81 ~~~~v~~~~~---~d--gk~~~~~lrfks~e~A~~f~~~ie 116 (130)
T 3n7c_A 81 NENLIKWPII---TD--GKLETFIIKVKQKADGRRLVGAVA 116 (130)
T ss_dssp CTTEEEEEEE---ET--TEEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccEEEEEec---CC--CceEEEEEEECCHHHHHHHHHHHH
Confidence 334555543 44 468999999999999999999986
No 10
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=99.47 E-value=1.1e-14 Score=107.33 Aligned_cols=44 Identities=39% Similarity=0.538 Sum_probs=39.1
Q ss_pred ccccccccccCCCCCCCcccchhhccccchhchHHHHhcccEeeeccC
Q 014916 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRN 60 (416)
Q Consensus 13 kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~ 60 (416)
||+|+.|||+||+++ ++| .+++|||++||+|||++|+|+|+||+
T Consensus 3 KR~A~~qlt~dn~~~--e~e--~ee~g~f~~AS~evl~~R~I~k~rRr 46 (46)
T 2c1m_B 3 KRVAEKELTDRNWDE--EDE--VEEMGTFSVASEEVMKNRAVKKAKRR 46 (46)
T ss_dssp CCCCSSCCCTTTSSC--CCC--CCCCCCCCBCCHHHHTTCCCCCCCCC
T ss_pred ccchhhhhccccccc--ccc--cccCCccccCCHHHHhccccccccCC
Confidence 999999999999876 333 46899999999999999999999884
No 11
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.42 E-value=1e-12 Score=114.56 Aligned_cols=98 Identities=14% Similarity=0.246 Sum_probs=85.2
Q ss_pred cceeEEEEeeeEEEecc--CCcccccee-----EEEEEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEE
Q 014916 308 NEKVVFSADSVLFEFLD--GSWKERGKG-----ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGIT 380 (416)
Q Consensus 308 nEevLFs~RaKLF~f~d--~eWKERGvG-----~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ 380 (416)
.|.+||+.||+||.++. +.|..+|.| .++|+++.. +..+|||+|+.+..+||+|+.|+++|.+.......+.
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~-~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~ 80 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTA-SSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQ 80 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETT-TTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEE
T ss_pred CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCC-CcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEE
Confidence 47899999999999974 689999998 889999986 8999999999888999999999999999987778888
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 381 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 381 ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
|.. + -..|-|.|.+.++|..|+++|+
T Consensus 81 w~~-----~----~~~~GL~F~se~eA~~F~~~~~ 106 (130)
T 1qc6_A 81 WRD-----A----RQVYGLNFASKEEATTFSNAML 106 (130)
T ss_dssp EEC-----S----SCEEEEEESCHHHHHHHHHHHH
T ss_pred EEc-----C----CEEEEEecCCHHHHHHHHHHHH
Confidence 842 1 2789999999999999999875
No 12
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=99.41 E-value=5.2e-14 Score=105.79 Aligned_cols=47 Identities=23% Similarity=0.421 Sum_probs=37.9
Q ss_pred ccccccccccCCCCCCCcccchhhccccchhchHHHHhcccEeeeccCCC
Q 014916 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQT 62 (416)
Q Consensus 13 kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~~ 62 (416)
||+|+.||||||+++++|++ ++. .+|++||+|||++|+|+||||+-.
T Consensus 3 KR~A~~qlTrdn~~~e~d~e--e~~-~~~~~AS~eVl~~RkI~k~krr~~ 49 (51)
T 1un0_C 3 KRVADAQIQRETYDSNESDD--DVT-PSTKVASSAVMNRRKIAMPKRRMA 49 (51)
T ss_pred ccccchhhcccccccccccc--ccC-cccccCCHHHHhcCcccccccccc
Confidence 99999999999998733333 333 366999999999999999988743
No 13
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=99.32 E-value=3.5e-13 Score=115.65 Aligned_cols=60 Identities=35% Similarity=0.518 Sum_probs=40.1
Q ss_pred cccccccccccCCCCCCCcccchhhccccchhchHHHHhcccEeeeccCCCCCC-CCCCCCccee
Q 014916 12 KKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTAST-PSSNPFAGIR 75 (416)
Q Consensus 12 ~kr~a~~qi~~d~~~~~~d~d~~~~~~gtf~~as~evl~~r~i~k~~~~~~~~~-~~~npf~~~~ 75 (416)
-||+|+.||||||+++ ||| +++.|+|++||+|||++|+|+|+||++.... .++++|.++.
T Consensus 7 AKR~A~~qLT~dNwd~--eed--~ee~GtF~~AS~eVLs~RkIkkaKRr~~~~~s~~~gaFkgFk 67 (114)
T 3tj3_C 7 AKRNAEKELTDRNWDQ--EDE--AEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFK 67 (114)
T ss_dssp CCCCCSSCCCTTTSSS--CCC--CCCCCCCCBCCHHHHHHSCCCCCCCCC---------------
T ss_pred hhhccccccccccccc--ccc--ccccCCcccCCHHHHhccccccccccCCCCCCCCcccccccc
Confidence 4999999999999886 223 3579999999999999999999977765443 3355666654
No 14
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.00 E-value=4.5e-09 Score=91.00 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=81.5
Q ss_pred cceeEEEEeeeEEEecc---CCccccceeEEE--EEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEEE
Q 014916 308 NEKVVFSADSVLFEFLD---GSWKERGKGELK--VNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 382 (416)
Q Consensus 308 nEevLFs~RaKLF~f~d---~eWKERGvG~LK--Ink~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft 382 (416)
.|..||+.||+||.+++ +.|..+|.|.++ |.++.. .+.+||+.|+ ..+|+||..|+++|.+.+.......|.
T Consensus 2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~-~~~yRIv~~~--~~~vv~n~~i~~~l~y~~a~p~FhqW~ 78 (120)
T 1ddw_A 2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDST-RNVYRIISLD--GSKAIINSTITPNMTFTKTSQKFGQWA 78 (120)
T ss_dssp CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETT-TTEEEEEEEE--TTEEEEEEECCTTCCCEECSSSEEEEE
T ss_pred CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCC-CCEEEEEEcc--CCEEEEeCEecCCcEEeeCCccccEEE
Confidence 47899999999999974 499995555544 777764 6789999988 469999999999999999888888887
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 383 CINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 383 ~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.- .-...|-|.|.++++|..|...|+
T Consensus 79 d~-------~~~~~~GLnF~s~~eA~~F~~~~~ 104 (120)
T 1ddw_A 79 DS-------RANTVYGLGFSSEHHLSKFAEKFQ 104 (120)
T ss_dssp ET-------TTTEEEEEECSSHHHHHHHHHHHH
T ss_pred cC-------CCcEEEEeccCCHHHHHHHHHHHH
Confidence 31 113889999999999999998875
No 15
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=98.88 E-value=1.3e-08 Score=92.98 Aligned_cols=98 Identities=17% Similarity=0.303 Sum_probs=81.8
Q ss_pred cceeEEEEeeeEEEecc---CCccccceeEEE--EEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEEE
Q 014916 308 NEKVVFSADSVLFEFLD---GSWKERGKGELK--VNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 382 (416)
Q Consensus 308 nEevLFs~RaKLF~f~d---~eWKERGvG~LK--Ink~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft 382 (416)
.|..||+.||.||.+++ +.|..+|.|.++ |.++.. .+.||||.|+ ..+|+||..|+++|.|.+...+...|.
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~-rnsyRIvg~~--d~kvvinc~I~~~l~Y~kasp~FHqW~ 83 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDST-RNVYRIISLD--GSKAIINSTITPNMTFTKTSQKFGQWA 83 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETT-TTEEEEEEEE--TTEEEEEEECCTTCCEEEEETTEEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCC-CCEEEEEEcc--CCEEEEecEecCCcEEeeCCcccceee
Confidence 57889999999999975 489996655555 677764 6789999998 469999999999999999888888887
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 383 CINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 383 ~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.- .-...|-|.|.++++|..|..+|+
T Consensus 84 d~-------~~~~v~GLnF~Se~eA~~F~~~~~ 109 (168)
T 1i2h_A 84 DS-------RANTVYGLGFSSEHHLSKFAEKFQ 109 (168)
T ss_dssp ET-------TTTEEEEEEESSHHHHHHHHHHHH
T ss_pred cC-------CCcEEEEeccCCHHHHHHHHHHHH
Confidence 42 113889999999999999999875
No 16
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=98.64 E-value=2e-07 Score=79.91 Aligned_cols=97 Identities=14% Similarity=0.289 Sum_probs=83.3
Q ss_pred ceeEEEEeeeEEEecc--CCccccce---e--EEEEEeecCCCCceEEEEEecc-cceEEeccccCCCceecccCCccEE
Q 014916 309 EKVVFSADSVLFEFLD--GSWKERGK---G--ELKVNVSTNATGRARLLMRARG-NYRLILNASLYPDMKLTNMDKKGIT 380 (416)
Q Consensus 309 EevLFs~RaKLF~f~d--~eWKERGv---G--~LKInk~kedt~K~RLVMR~Dg-t~KVlLN~~I~~~Mkv~~~dkksV~ 380 (416)
|..|++.||.||.++. +.|.-.|. | .|.|.++.. .+.|||++|.-+ ..++++|+.|+++|.+.......-.
T Consensus 3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~-~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~ 81 (115)
T 1egx_A 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPT-ANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQ 81 (115)
T ss_dssp SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETT-TTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEE
T ss_pred ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCC-CCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceE
Confidence 6789999999999963 56999987 4 489988864 789999999977 7889999999999999987777777
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 381 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 381 ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
|.. + -..|-|-|.++++|..|.++|+
T Consensus 82 w~~-----~----~~~~GLnF~se~eA~~F~~~v~ 107 (115)
T 1egx_A 82 WRD-----A----RQVWGLNFGSKEDAAQFAAGMA 107 (115)
T ss_dssp EES-----S----SCEEEEEESSHHHHHHHHHHHH
T ss_pred Eec-----C----CEEEEEecCCHHHHHHHHHHHH
Confidence 762 1 2789999999999999998874
No 17
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=98.63 E-value=2.9e-07 Score=78.54 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=82.7
Q ss_pred cceeEEEEeeeEEEecc--CCccccc--eeE--EEEEeecCCCCceEEEEEecccceEEeccccCCCceecccCCccEEE
Q 014916 308 NEKVVFSADSVLFEFLD--GSWKERG--KGE--LKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 381 (416)
Q Consensus 308 nEevLFs~RaKLF~f~d--~eWKERG--vG~--LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~f 381 (416)
.|..|++.||.||.++. +.|.-.| -|. |.|.++.. .+.|||+.|.-+..++++|+.|+++|.+.......-.|
T Consensus 2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~-~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w 80 (112)
T 1evh_A 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTG-NNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQW 80 (112)
T ss_dssp CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETT-TTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEE
T ss_pred CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECC-CCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeE
Confidence 37899999999999974 6899988 344 88888764 68899999987788999999999999999877777777
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 382 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 382 t~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.. + -..|-|-|.++++|..|.++|+
T Consensus 81 ~~-----~----~~~~GLnF~se~eA~~F~~~v~ 105 (112)
T 1evh_A 81 RD-----A----RQVYGLNFGSKEDANVFASAMM 105 (112)
T ss_dssp EC-----S----SCEEEEEESSHHHHHHHHHHHH
T ss_pred ec-----C----CEEEEEecCCHHHHHHHHHHHH
Confidence 63 1 2689999999999999998874
No 18
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=98.43 E-value=1.1e-06 Score=75.76 Aligned_cols=98 Identities=14% Similarity=0.207 Sum_probs=76.8
Q ss_pred ceeEEEEeeeEEEecc--CCccccceeE---EEEEeec----CCCCceEEEEEecccceEEeccccCCCceecccCCccE
Q 014916 309 EKVVFSADSVLFEFLD--GSWKERGKGE---LKVNVST----NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGI 379 (416)
Q Consensus 309 EevLFs~RaKLF~f~d--~eWKERGvG~---LKInk~k----edt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV 379 (416)
|..|+++||.||.+++ +.|.-.|.|- +.|...+ ...+.|||+.|+-+..+|++|+.|+++|.+.......-
T Consensus 3 ~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh 82 (118)
T 1xod_A 3 DDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTFH 82 (118)
T ss_dssp --CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTEE
T ss_pred CccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcce
Confidence 6789999999999974 7899987666 4555442 12578999999977789999999999999998777777
Q ss_pred EEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 380 TFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 380 ~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.|..- -..|-|-|.++++|..|.++|+
T Consensus 83 ~w~~~---------~~~~GL~F~se~eA~~F~~~v~ 109 (118)
T 1xod_A 83 HWRIG---------DKKFGLTFQSPADARAFDRGIR 109 (118)
T ss_dssp EEEET---------TEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEeC---------CEEEEEecCCHHHHHHHHHHHH
Confidence 77631 2669999999999999998874
No 19
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.35 E-value=3.2e-06 Score=73.79 Aligned_cols=100 Identities=15% Similarity=0.228 Sum_probs=81.8
Q ss_pred ccceeEEEEeeeEEEecc--CCccccceeE---EEEEeec----CCCCceEEEEEecccceEEeccccCCCceecccCCc
Q 014916 307 ENEKVVFSADSVLFEFLD--GSWKERGKGE---LKVNVST----NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKK 377 (416)
Q Consensus 307 EnEevLFs~RaKLF~f~d--~eWKERGvG~---LKInk~k----edt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkk 377 (416)
+.|..|++.||.||.+++ +.|.-.|.|- +.|...+ ...+.|||+.|+-+-.++++|..|+++|.+......
T Consensus 10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~ 89 (126)
T 2jp2_A 10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPT 89 (126)
T ss_dssp SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETT
T ss_pred CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCc
Confidence 457899999999999974 6899988776 4455443 126789999999777899999999999999987777
Q ss_pred cEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 378 GITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 378 sV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.-.|... -..|-|-|.++++|..|.++|+
T Consensus 90 FH~w~~~---------~~~~GLnF~se~eA~~F~~~v~ 118 (126)
T 2jp2_A 90 FHHWKVD---------NRKFGLTFQSPADARAFDRGVR 118 (126)
T ss_dssp EEEEECS---------SSEEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEcC---------CEEEEEecCCHHHHHHHHHHHH
Confidence 7777631 1569999999999999998874
No 20
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=97.52 E-value=0.00089 Score=58.93 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=74.4
Q ss_pred eEEEEeeeEEEecc--CCccccc---eeEEEEEeec--C--CCCceEEEEEecccceEEeccccCCCceecccCCccEEE
Q 014916 311 VVFSADSVLFEFLD--GSWKERG---KGELKVNVST--N--ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 381 (416)
Q Consensus 311 vLFs~RaKLF~f~d--~eWKERG---vG~LKInk~k--e--dt~K~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~f 381 (416)
..|++||.+|.+++ +.|.-.| +-.+.|.+.. . +.+-|||+=|+-+-.+||||..|.++|+|.+.....=.|
T Consensus 12 ~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHqW 91 (130)
T 3syx_A 12 SYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHHW 91 (130)
T ss_dssp EEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEEE
T ss_pred eeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEecccccccc
Confidence 57899999999985 6799875 3355565542 1 135799999977667899999999999999887777677
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHh
Q 014916 382 ACINSATEGKSGLSTFALKFRDASIVEEFQTAV 414 (416)
Q Consensus 382 t~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaI 414 (416)
..- -+.|=|.|.++++|..|.+.|
T Consensus 92 rd~---------~~~yGL~F~S~~dA~~F~~~~ 115 (130)
T 3syx_A 92 KID---------DKKFGLTFQSPADARAFDRGI 115 (130)
T ss_dssp EET---------TEEEEEEESSHHHHHHHHHHH
T ss_pred ccc---------CeEeecccCCHHHHHHHHHHH
Confidence 521 266999999999999997655
No 21
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=96.58 E-value=0.026 Score=50.73 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=73.0
Q ss_pred eeEEEEeeeEEEecc-CCccccceeEEEEEeecCCCCc--eEEEEEecccceEEeccccCCCceecccCCccEEEEeecc
Q 014916 310 KVVFSADSVLFEFLD-GSWKERGKGELKVNVSTNATGR--ARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386 (416)
Q Consensus 310 evLFs~RaKLF~f~d-~eWKERGvG~LKInk~kedt~K--~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~ 386 (416)
.+|...=|.||.-.. +.|.-++.|.|-|.+... ... .||+-+.. .+++.++-|+.+|.+.........|..
T Consensus 41 ~~lataVaqLy~a~~~~~W~~~~~Gal~~VkD~~-~rsyf~RlvDl~~--~~viweqELY~~f~Y~~~r~~FHtFe~--- 114 (152)
T 1mke_A 41 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNP-QRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTFAG--- 114 (152)
T ss_dssp EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETT-TTEEEEEEECSSS--CSEEEEEECCSSCCCBCSSSSEEEEEC---
T ss_pred cEEEEeeEEEEEECCCCceEecCceEEEEEEECC-CCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEEec---
Confidence 467777788998864 689999999999987753 223 38888864 589999999999999765454445432
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 387 ATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+ -.++-|.|-+.++|..|+++|.
T Consensus 115 --d----~c~~GLnFade~EA~~F~~~V~ 137 (152)
T 1mke_A 115 --D----TCQVALNFANEEEAKKFRKAVT 137 (152)
T ss_dssp --S----SSEEEEEESSHHHHHHHHHHHH
T ss_pred --C----CcEEEEeeCCHHHHHHHHHHHH
Confidence 2 2679999999999999999874
No 22
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=96.31 E-value=0.02 Score=52.17 Aligned_cols=94 Identities=19% Similarity=0.216 Sum_probs=73.1
Q ss_pred eeEEEEeeeEEEecc-CCccccceeEEEEEeecCCCCc--eEEEEEecccceEEeccccCCCceecccCCccEEEEeecc
Q 014916 310 KVVFSADSVLFEFLD-GSWKERGKGELKVNVSTNATGR--ARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386 (416)
Q Consensus 310 evLFs~RaKLF~f~d-~eWKERGvG~LKInk~kedt~K--~RLVMR~Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~ 386 (416)
.+|...=|.||.-.. +.|.-.+.|.|-|.+... ... .|||-+.. .+|+.++-|+.+|.+.........|-.
T Consensus 58 ~~lataVaqLy~a~~~~~W~~~~~Gal~~vkD~~-~rsyf~RlvDl~~--~~vvweqELY~~f~Y~~~r~~FHtFe~--- 131 (169)
T 2ifs_A 58 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNP-QRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTFAG--- 131 (169)
T ss_dssp EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETT-TTEEEEEEEETTT--CCCCEEEECCSSCCCBCCCSSEEEEEC---
T ss_pred eEEEEEEEEEEEECCCCeeEecCceEEEEEEECC-CCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEeec---
Confidence 367777788998864 689999999999987753 223 39998874 589999999999999765454445532
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 387 ATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
+ -.++-|.|-+.++|..|+++|.
T Consensus 132 --d----~c~~GLnFade~EA~~F~~~V~ 154 (169)
T 2ifs_A 132 --D----TCQVALNFANEEEAKKFRKAVT 154 (169)
T ss_dssp --S----SSEEEEECSCHHHHHHHHHHHH
T ss_pred --C----CcEEEEeeCCHHHHHHHHHHHH
Confidence 2 2679999999999999999874
No 23
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=84.10 E-value=5.8 Score=34.30 Aligned_cols=50 Identities=6% Similarity=0.120 Sum_probs=40.8
Q ss_pred ceEEeccccCCCceecccCCccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 357 YRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 357 ~KVlLN~~I~~~Mkv~~~dkksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
...++=..|.++..+.++++++.+|+.- ....||||.+..+...|+..|+
T Consensus 54 ~~~l~ef~V~~~TEc~rVGk~S~litlg---------~~slLl~Fas~~d~~~F~~~l~ 103 (117)
T 2oqb_A 54 DVCVFKCSVSRETECSRVGRQSFIITLG---------CNSVLIQFATPHDFCSFYNILK 103 (117)
T ss_dssp CCEEEEEEEETTSEEEEETTTEEEEEET---------TEEEEEECSSHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCccceeecCeEEEEEEC---------CcEEEEEeCCHHHHHHHHHHHH
Confidence 4455556778889999999999988752 3679999999999999999875
No 24
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=73.35 E-value=45 Score=28.91 Aligned_cols=94 Identities=10% Similarity=0.184 Sum_probs=63.6
Q ss_pred eeEEEE-eeeEEEecc--CCccccce-eEEEEEeecCCCCceEEEEEec-ccceEEeccccCCCceecccCCccEEEEee
Q 014916 310 KVVFSA-DSVLFEFLD--GSWKERGK-GELKVNVSTNATGRARLLMRAR-GNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 310 evLFs~-RaKLF~f~d--~eWKERGv-G~LKInk~kedt~K~RLVMR~D-gt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
++|+.. .|.||.|+. ++|...|+ |.|.|-+... .-+++|++=+. +..-+++ .|.++|.+... +..|++-.-
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~-~P~~~~ivLNR~~~~n~~~--~l~~~~~~e~~-~~~li~r~~ 105 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNA-EPFHSIFINNRLNTTSFVE--PITGSLELQSQ-PPFLLYRNE 105 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSS-SSSEEEEEEETTTTEEEEE--ECCSSCEEEEE-TTEEEEEEG
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccC-CCceEEEEEcCCCCcceeE--EcCCCcEEEee-CCEEEEECC
Confidence 445544 689999974 68988887 8888876543 45676655444 3334554 47788888865 455655321
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.-..|-|=|-+.++.+.+.+.|+
T Consensus 106 --------~~~I~GiWf~~~~d~~~i~~~l~ 128 (134)
T 2lyd_A 106 --------RSRIRGFWFYNSEECDRISGLVN 128 (134)
T ss_dssp --------GGEEEEEEESSHHHHHHHHHHHH
T ss_pred --------CCcEEEEEecChHHHHHHHHHHH
Confidence 13579999999999888877664
No 25
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=70.98 E-value=50 Score=28.41 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=60.5
Q ss_pred eeEEE-EeeeEEEec--cCCccccce-eEEEEEeecCCCCceEEEEEe-cccceEEeccccCCCceecccCCccEEEEee
Q 014916 310 KVVFS-ADSVLFEFL--DGSWKERGK-GELKVNVSTNATGRARLLMRA-RGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (416)
Q Consensus 310 evLFs-~RaKLF~f~--d~eWKERGv-G~LKInk~kedt~K~RLVMR~-Dgt~KVlLN~~I~~~Mkv~~~dkksV~ft~v 384 (416)
++|.. ..|-||.|+ .++|...|+ |.|.|-+.. .-+++|++=+ .+.-.++++ |.++|.++.. +..+.+-.-
T Consensus 25 ~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~--~P~~~~iVlNR~~~~n~~~~--i~~~~~~e~~-~~~l~~r~~ 99 (127)
T 2qkl_A 25 SIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ--RARVGYVILNRNSPENLYLF--INHPSNVHLV-DRYLIHRTE 99 (127)
T ss_dssp EEEEEEEEEEEECC------CCEEEEEEEEEEEEET--TCCEEEEEEESSSSCCEEEE--ECSGGGEEEE-TTEEEEEET
T ss_pred HHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc--CCceEEEEEcCCCCcCeeEe--cCCCceEEEe-CCEEEEEcC
Confidence 34444 468999998 579999997 888887654 3456554443 344445544 6778888865 456655431
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 385 n~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.-..|-|=|-+.++.+...+.|+
T Consensus 100 --------~~~i~GiWf~~~~d~~~i~~~l~ 122 (127)
T 2qkl_A 100 --------NQHVVGLWMFDPNDMSRIFNIVK 122 (127)
T ss_dssp --------TTEEEEEEESSTHHHHHHHHHHH
T ss_pred --------CCcEEEEEEEchHHHHHHHHHHH
Confidence 13689999999999998888775
No 26
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport factor, repeat, protein transport; 2.80A {Saccharomyces cerevisiae}
Probab=67.13 E-value=4.7 Score=34.90 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=23.6
Q ss_pred CCCCcccccccCccccccccccCCCcccceeeecCCCCCCCC-CCCCCCcccccc
Q 014916 217 DSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSA-SNSTSASVFGQV 270 (416)
Q Consensus 217 ~~~~~fSF~~~ss~~~aFtg~a~tg~SsssFsFG~~~~~~s~-~~t~s~~~FG~~ 270 (416)
.+.|.||||...... . ...-+.+.|+||........ ....++.+||..
T Consensus 34 ~~kPaFSFG~k~~~~----k--~~~~sKPaFSFGs~~~~~~~~~~~kp~FSFGak 82 (119)
T 1o6o_D 34 VSKPAFSFGAKANEK----K--ESDESKSAFSFGSKPTGKEEGDGAKAAISFGAK 82 (119)
T ss_pred cCCcccccCCCCCcc----c--cccCCCcccccccCCCccccccCCCCccccccC
Confidence 467778887753221 0 11223466888876543221 122234666653
No 27
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport factor, repeat, protein transport; 2.80A {Saccharomyces cerevisiae}
Probab=64.39 E-value=9.3 Score=33.05 Aligned_cols=59 Identities=25% Similarity=0.378 Sum_probs=29.1
Q ss_pred CCCcccccccCccccccccccCCCcccceeeecCCCCCCCC-CCCCCCcccccccCC--------CccccCCCC
Q 014916 218 SSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSA-SNSTSASVFGQVNNG--------NSSLFNTPA 282 (416)
Q Consensus 218 ~~~~fSF~~~ss~~~aFtg~a~tg~SsssFsFG~~~~~~s~-~~t~s~~~FG~~s~g--------~s~~FG~~~ 282 (416)
..|.||||...... . ..-...+.|+||........ ...-+...||..... ..|.||+..
T Consensus 16 sKPaFSFG~~~~~~----k--~~~~~kPaFSFG~k~~~~k~~~~sKPaFSFGs~~~~~~~~~~~kp~FSFGak~ 83 (119)
T 1o6o_D 16 SKPAFSFGAKPDEK----K--NDEVSKPAFSFGAKANEKKESDESKSAFSFGSKPTGKEEGDGAKAAISFGAKP 83 (119)
T ss_pred CCCcccccCCCCcc----c--ccccCCcccccCCCCCccccccCCCcccccccCCCccccccCCCCccccccCC
Confidence 34688888855311 0 01123477999877432211 112234667763322 225577654
No 28
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=36.44 E-value=86 Score=27.53 Aligned_cols=102 Identities=16% Similarity=0.290 Sum_probs=69.6
Q ss_pred ccceeEEEEe-eeEEEecc---------CCccc---cceeEEEEEeecCCCCceEEEEEecccceEEecccc--CCCcee
Q 014916 307 ENEKVVFSAD-SVLFEFLD---------GSWKE---RGKGELKVNVSTNATGRARLLMRARGNYRLILNASL--YPDMKL 371 (416)
Q Consensus 307 EnEevLFs~R-aKLF~f~d---------~eWKE---RGvG~LKInk~kedt~K~RLVMR~Dgt~KVlLN~~I--~~~Mkv 371 (416)
+=|.+||.++ |.+|+.-. ..|.. .=.|-|||.... .++-|.+-...++.|..+++| +++..+
T Consensus 6 ~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~g---~~~~I~LeD~~tGeLFA~cPv~~~~~~~V 82 (133)
T 1tqz_A 6 EYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKG---KIAYIKLEDKVSGELFAQAPVEQYPGIAV 82 (133)
T ss_dssp CCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECCS---SSEEEEEECSSCCSSCEEEEECSSCCCCE
T ss_pred ceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEeC---CEEEEEEEeCCCCcEEEeCcccCCCCcce
Confidence 4467788775 67887641 35653 467889998764 467777777778889999998 666777
Q ss_pred cccC--CccEEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHhh
Q 014916 372 TNMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVA 415 (416)
Q Consensus 372 ~~~d--kksV~ft~vn~~sEgk~kl~tylLRFKtaE~AdeFkkaIE 415 (416)
.+.- .++..+-..+ +.+.-...=|-|.+-.+|=+|.-+|.
T Consensus 83 E~v~DSSRYFVlRv~d----~~gr~AfiGiGF~eR~dAFDF~vaLq 124 (133)
T 1tqz_A 83 ETVTDSSRYFVIRIQD----GTGRSAFIGIGFTDRGDAFDFNVSLQ 124 (133)
T ss_dssp EECTTCCSCEEEEEEE----TTTEEEEEEEECSCHHHHHHHHHHHH
T ss_pred EEeecCcCeEEEEEEC----CCCcEEEEeeeecccccccchHHHHH
Confidence 7652 4554444333 23455667788988888888887763
No 29
>1q67_A Decapping protein involved in mRNA degradation- DCP1P; beta sandwich, transcription; 2.30A {Saccharomyces cerevisiae} SCOP: b.55.1.7
Probab=22.69 E-value=5e+02 Score=24.65 Aligned_cols=31 Identities=16% Similarity=0.482 Sum_probs=23.3
Q ss_pred eeEEE-EeeeEEEecc--CCccccc-eeEEEEEee
Q 014916 310 KVVFS-ADSVLFEFLD--GSWKERG-KGELKVNVS 340 (416)
Q Consensus 310 evLFs-~RaKLF~f~d--~eWKERG-vG~LKInk~ 340 (416)
.+||. ..|-||.|+. .+|...+ -|.|.|-..
T Consensus 36 qIL~~t~hasvYkfd~~~~eW~K~~~eG~LfIy~R 70 (231)
T 1q67_A 36 QLLFHTPHASLYKWDFKKDEWNKLEYQGVLAIYLR 70 (231)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEE
T ss_pred HHHhcCCeEEEEEecCCCCceEecCcEEEEEEEEe
Confidence 45554 4789999984 6999998 488888654
No 30
>1f59_C NSP1P, FXFG nucleoporin repeats; protein-protein complex, transport protein receptor; 2.80A {Saccharomyces cerevisiae} SCOP: j.70.1.1
Probab=22.01 E-value=46 Score=21.62 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=6.8
Q ss_pred CCCcccccccCc
Q 014916 218 SSQLSSFGQLSS 229 (416)
Q Consensus 218 ~~~~fSF~~~ss 229 (416)
+.|-|||+....
T Consensus 4 skpafsfg~~~~ 15 (28)
T 1f59_C 4 SKPAFSFGXXXX 15 (28)
T ss_dssp CCCCCCSSSCCC
T ss_pred CCcccccccccc
Confidence 456666665433
Done!