Query 014917
Match_columns 416
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 01:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1196 Smc Chromosome segrega 91.5 7.5 0.00016 44.6 16.6 67 165-234 249-315 (1163)
2 PRK11637 AmiB activator; Provi 88.8 7.5 0.00016 39.5 12.5 15 309-323 56-70 (428)
3 PF10211 Ax_dynein_light: Axon 88.7 8.3 0.00018 36.0 11.8 79 320-398 101-187 (189)
4 TIGR00606 rad50 rad50. This fa 87.7 48 0.001 38.8 19.4 26 210-235 788-813 (1311)
5 PRK09039 hypothetical protein; 86.4 24 0.00052 35.7 14.3 57 347-406 138-194 (343)
6 PF09177 Syntaxin-6_N: Syntaxi 84.3 18 0.00038 30.0 10.3 89 301-398 6-97 (97)
7 KOG0161 Myosin class II heavy 83.3 16 0.00035 45.0 13.3 55 342-396 932-986 (1930)
8 COG3883 Uncharacterized protei 82.3 17 0.00037 36.4 11.0 154 212-387 50-217 (265)
9 PF03962 Mnd1: Mnd1 family; I 81.9 40 0.00087 31.6 12.8 106 293-407 62-174 (188)
10 smart00338 BRLZ basic region l 81.5 8.7 0.00019 29.5 7.0 45 323-367 14-61 (65)
11 TIGR02169 SMC_prok_A chromosom 81.4 54 0.0012 36.2 15.4 6 163-168 654-659 (1164)
12 PF11932 DUF3450: Protein of u 80.7 21 0.00046 33.9 10.8 70 336-405 46-115 (251)
13 PF06428 Sec2p: GDP/GTP exchan 80.3 8.6 0.00019 33.2 7.3 58 348-405 10-68 (100)
14 PRK11281 hypothetical protein; 80.2 28 0.0006 40.8 13.3 100 293-393 73-179 (1113)
15 PRK11637 AmiB activator; Provi 79.9 18 0.00039 36.9 10.6 80 311-390 44-126 (428)
16 COG1196 Smc Chromosome segrega 79.5 1.3E+02 0.0027 35.1 18.1 62 336-397 853-914 (1163)
17 PF10458 Val_tRNA-synt_C: Valy 79.4 4.4 9.5E-05 31.7 4.8 51 343-393 1-55 (66)
18 PF10146 zf-C4H2: Zinc finger- 78.9 26 0.00057 34.1 10.9 69 339-407 32-100 (230)
19 PHA02562 46 endonuclease subun 78.5 48 0.001 34.1 13.2 55 337-391 204-258 (562)
20 KOG1655 Protein involved in va 76.0 80 0.0017 31.2 13.1 129 204-399 18-151 (218)
21 TIGR02169 SMC_prok_A chromosom 75.2 94 0.002 34.4 15.0 12 355-366 877-888 (1164)
22 PF06008 Laminin_I: Laminin Do 72.8 91 0.002 29.8 18.0 61 164-234 12-72 (264)
23 PF14362 DUF4407: Domain of un 72.8 63 0.0014 31.3 11.7 26 352-377 188-213 (301)
24 TIGR02680 conserved hypothetic 71.5 2.3E+02 0.005 33.9 18.2 41 343-383 925-965 (1353)
25 PRK10884 SH3 domain-containing 70.6 47 0.001 31.8 10.1 41 337-377 123-163 (206)
26 PRK02224 chromosome segregatio 69.9 1.8E+02 0.0039 32.1 19.0 14 286-299 468-481 (880)
27 PF09744 Jnk-SapK_ap_N: JNK_SA 69.4 96 0.0021 28.8 12.3 84 323-406 66-153 (158)
28 PF08317 Spc7: Spc7 kinetochor 68.8 79 0.0017 31.5 11.7 52 139-205 59-111 (325)
29 PRK09039 hypothetical protein; 67.9 1.4E+02 0.003 30.4 13.3 43 344-386 156-199 (343)
30 KOG0996 Structural maintenance 67.8 1.9E+02 0.0041 35.0 15.7 227 177-408 779-1028(1293)
31 PF10168 Nup88: Nuclear pore c 67.1 70 0.0015 35.8 12.0 116 297-414 583-710 (717)
32 PF11068 YlqD: YlqD protein; 67.1 63 0.0014 29.1 9.7 60 339-398 20-84 (131)
33 KOG0980 Actin-binding protein 65.4 1.4E+02 0.003 35.0 13.9 38 205-244 372-409 (980)
34 PF04111 APG6: Autophagy prote 63.8 64 0.0014 32.4 10.0 31 337-367 55-85 (314)
35 PRK14127 cell division protein 63.4 13 0.00028 32.8 4.5 60 323-382 14-73 (109)
36 PF15188 CCDC-167: Coiled-coil 63.2 24 0.00052 30.0 5.9 58 344-405 3-60 (85)
37 PF05278 PEARLI-4: Arabidopsis 62.7 95 0.0021 31.4 10.9 55 346-404 207-261 (269)
38 TIGR03185 DNA_S_dndD DNA sulfu 62.3 1.2E+02 0.0025 33.0 12.2 45 337-381 207-251 (650)
39 PF04012 PspA_IM30: PspA/IM30 61.7 1.3E+02 0.0029 27.7 12.3 84 305-388 56-140 (221)
40 PRK00409 recombination and DNA 61.5 1.9E+02 0.0041 32.7 14.0 33 128-160 341-375 (782)
41 PF12718 Tropomyosin_1: Tropom 61.4 65 0.0014 29.0 8.7 37 343-379 32-68 (143)
42 PF12325 TMF_TATA_bd: TATA ele 61.0 82 0.0018 28.1 9.1 72 344-415 35-111 (120)
43 TIGR03752 conj_TIGR03752 integ 60.6 78 0.0017 34.3 10.4 87 284-376 53-139 (472)
44 PRK03918 chromosome segregatio 60.4 1.4E+02 0.0031 32.6 12.6 38 346-383 200-237 (880)
45 KOG0018 Structural maintenance 59.7 79 0.0017 37.5 10.9 35 171-206 264-298 (1141)
46 PF00170 bZIP_1: bZIP transcri 59.7 68 0.0015 24.6 7.4 52 311-365 5-59 (64)
47 PHA02562 46 endonuclease subun 59.2 2.2E+02 0.0048 29.4 22.0 94 292-385 298-404 (562)
48 PF09726 Macoilin: Transmembra 58.8 1.5E+02 0.0034 33.2 12.7 34 351-384 543-576 (697)
49 PRK03947 prefoldin subunit alp 57.8 1.3E+02 0.0027 26.2 10.3 92 289-381 9-136 (140)
50 PF13600 DUF4140: N-terminal d 57.6 24 0.00052 29.0 5.0 33 345-377 69-101 (104)
51 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.9 1.4E+02 0.0029 26.2 10.0 72 291-366 54-125 (132)
52 PRK00409 recombination and DNA 56.4 1.6E+02 0.0034 33.3 12.3 58 311-368 506-563 (782)
53 TIGR01069 mutS2 MutS2 family p 55.9 1E+02 0.0022 34.8 10.8 23 127-149 335-357 (771)
54 KOG0994 Extracellular matrix g 55.1 93 0.002 37.7 10.5 34 50-83 1449-1484(1758)
55 TIGR03185 DNA_S_dndD DNA sulfu 54.7 2E+02 0.0044 31.2 12.5 77 294-370 210-286 (650)
56 COG1579 Zn-ribbon protein, pos 54.3 2.3E+02 0.005 28.1 16.8 23 302-324 54-76 (239)
57 PRK02224 chromosome segregatio 54.0 3.4E+02 0.0075 30.0 19.6 20 143-162 142-161 (880)
58 PF04111 APG6: Autophagy prote 53.9 2.5E+02 0.0054 28.3 12.8 51 336-386 68-118 (314)
59 COG2433 Uncharacterized conser 53.2 1.2E+02 0.0025 34.2 10.5 76 339-416 429-511 (652)
60 KOG0963 Transcription factor/C 50.7 4.2E+02 0.0091 30.0 14.4 151 250-405 141-334 (629)
61 TIGR03752 conj_TIGR03752 integ 50.5 1.4E+02 0.003 32.5 10.3 63 305-369 75-139 (472)
62 KOG0976 Rho/Rac1-interacting s 49.7 3.1E+02 0.0068 32.4 13.2 117 278-394 276-403 (1265)
63 PF11932 DUF3450: Protein of u 49.6 2.4E+02 0.0052 26.9 13.2 96 293-399 21-116 (251)
64 PRK10929 putative mechanosensi 49.0 2.6E+02 0.0057 33.3 13.0 63 225-324 27-89 (1109)
65 TIGR01069 mutS2 MutS2 family p 48.9 2.5E+02 0.0054 31.7 12.4 19 143-161 325-343 (771)
66 PF07426 Dynactin_p22: Dynacti 48.4 54 0.0012 30.6 6.2 48 345-392 4-62 (174)
67 smart00787 Spc7 Spc7 kinetocho 48.3 2.9E+02 0.0063 28.1 11.7 38 156-201 64-102 (312)
68 PF05103 DivIVA: DivIVA protei 47.7 15 0.00033 30.8 2.4 53 323-375 9-61 (131)
69 PF13747 DUF4164: Domain of un 46.5 1.8E+02 0.0039 24.5 8.7 53 311-367 8-60 (89)
70 PF15186 TEX13: Testis-express 46.3 1.4E+02 0.003 28.2 8.4 109 277-386 18-143 (152)
71 TIGR01000 bacteriocin_acc bact 45.9 3.4E+02 0.0074 28.0 12.1 11 384-394 291-301 (457)
72 PF13805 Pil1: Eisosome compon 44.3 2.2E+02 0.0048 28.9 10.1 80 289-392 117-202 (271)
73 COG4026 Uncharacterized protei 44.1 1.7E+02 0.0038 29.6 9.3 62 343-404 139-203 (290)
74 PF05911 DUF869: Plant protein 44.0 5.6E+02 0.012 29.5 16.1 177 202-410 11-206 (769)
75 PRK04863 mukB cell division pr 44.0 6.6E+02 0.014 31.0 15.4 20 313-332 320-339 (1486)
76 KOG4302 Microtubule-associated 42.6 3.5E+02 0.0075 30.7 12.2 111 290-400 51-193 (660)
77 PRK04863 mukB cell division pr 42.5 5.7E+02 0.012 31.5 14.7 13 196-208 194-206 (1486)
78 PF04977 DivIC: Septum formati 42.0 1.2E+02 0.0025 23.2 6.3 32 334-365 19-50 (80)
79 cd00890 Prefoldin Prefoldin is 41.9 1E+02 0.0022 25.6 6.4 35 342-376 90-124 (129)
80 smart00787 Spc7 Spc7 kinetocho 41.4 4E+02 0.0087 27.1 15.1 57 346-402 225-281 (312)
81 PRK10884 SH3 domain-containing 41.1 2.3E+02 0.005 27.2 9.4 40 339-378 118-157 (206)
82 cd07596 BAR_SNX The Bin/Amphip 41.1 2.5E+02 0.0055 24.7 11.8 19 326-344 108-126 (218)
83 PF12777 MT: Microtubule-bindi 41.1 2.1E+02 0.0046 28.7 9.5 62 333-394 243-304 (344)
84 PF11471 Sugarporin_N: Maltopo 41.1 49 0.0011 26.3 4.1 28 351-378 30-57 (60)
85 PRK12704 phosphodiesterase; Pr 40.0 4.7E+02 0.01 28.3 12.4 43 321-366 92-134 (520)
86 KOG0288 WD40 repeat protein Ti 39.8 81 0.0018 34.0 6.6 57 350-406 3-59 (459)
87 COG4942 Membrane-bound metallo 39.7 4.8E+02 0.011 28.1 12.2 60 336-395 63-123 (420)
88 PF02996 Prefoldin: Prefoldin 39.7 86 0.0019 26.0 5.6 42 324-365 76-117 (120)
89 PF08614 ATG16: Autophagy prot 39.6 3.1E+02 0.0067 25.3 9.7 44 342-385 133-176 (194)
90 PF07106 TBPIP: Tat binding pr 39.6 99 0.0022 27.7 6.4 15 380-394 144-158 (169)
91 TIGR01005 eps_transp_fam exopo 39.3 2.3E+02 0.005 31.0 10.1 16 217-232 133-148 (754)
92 PF12777 MT: Microtubule-bindi 39.0 2.8E+02 0.006 27.9 10.0 79 298-380 24-102 (344)
93 KOG4001 Axonemal dynein light 38.8 3E+02 0.0066 27.6 9.9 55 323-377 169-223 (259)
94 TIGR00606 rad50 rad50. This fa 38.5 7.5E+02 0.016 29.4 18.0 21 380-400 947-967 (1311)
95 PRK03918 chromosome segregatio 38.4 5.8E+02 0.013 28.1 13.5 17 145-162 141-157 (880)
96 PF01920 Prefoldin_2: Prefoldi 38.2 97 0.0021 24.9 5.6 36 339-374 62-97 (106)
97 PF04871 Uso1_p115_C: Uso1 / p 38.0 3E+02 0.0065 24.7 10.1 14 397-410 79-92 (136)
98 TIGR02231 conserved hypothetic 37.9 3.7E+02 0.008 28.3 11.1 45 336-380 128-172 (525)
99 TIGR02680 conserved hypothetic 37.9 8E+02 0.017 29.6 19.0 40 365-404 352-391 (1353)
100 PF07106 TBPIP: Tat binding pr 37.7 1.7E+02 0.0037 26.2 7.5 31 343-373 83-113 (169)
101 PF13514 AAA_27: AAA domain 37.5 6E+02 0.013 29.6 13.4 51 313-365 902-952 (1111)
102 COG1730 GIM5 Predicted prefold 37.1 1.5E+02 0.0032 27.4 7.1 50 323-372 92-141 (145)
103 PF01920 Prefoldin_2: Prefoldi 36.7 1.5E+02 0.0034 23.7 6.5 28 343-370 73-100 (106)
104 PF08657 DASH_Spc34: DASH comp 36.4 1.2E+02 0.0025 30.2 6.8 69 291-359 178-259 (259)
105 TIGR02449 conserved hypothetic 35.9 2.4E+02 0.0053 23.0 7.4 49 347-395 1-49 (65)
106 PF14362 DUF4407: Domain of un 35.9 4.2E+02 0.0091 25.7 12.3 50 313-364 111-160 (301)
107 PF09304 Cortex-I_coil: Cortex 35.8 2E+02 0.0042 25.8 7.4 45 346-393 30-74 (107)
108 PRK10203 hypothetical protein; 35.7 2.4E+02 0.0052 25.5 8.0 72 326-397 44-119 (122)
109 PF06637 PV-1: PV-1 protein (P 35.2 4.2E+02 0.009 28.7 10.8 83 292-374 277-377 (442)
110 PRK01156 chromosome segregatio 34.9 6.9E+02 0.015 28.0 13.4 40 329-368 671-710 (895)
111 KOG0161 Myosin class II heavy 34.3 6.3E+02 0.014 32.2 13.5 67 332-398 1041-1107(1930)
112 TIGR01147 V_ATP_synt_G vacuola 34.1 1.4E+02 0.0031 26.4 6.3 55 293-354 28-87 (113)
113 PF04912 Dynamitin: Dynamitin 33.8 4.7E+02 0.01 26.7 10.8 53 216-270 96-148 (388)
114 KOG0709 CREB/ATF family transc 33.5 1.3E+02 0.0028 32.8 7.0 63 310-372 243-319 (472)
115 PF09726 Macoilin: Transmembra 33.2 5.9E+02 0.013 28.8 12.2 50 317-366 462-515 (697)
116 KOG4360 Uncharacterized coiled 32.9 3E+02 0.0066 30.7 9.6 77 292-372 222-301 (596)
117 PRK12704 phosphodiesterase; Pr 32.7 6.7E+02 0.015 27.2 13.8 14 387-400 153-166 (520)
118 PF04156 IncA: IncA protein; 32.0 3.8E+02 0.0082 24.1 14.5 66 341-406 125-190 (191)
119 PF12128 DUF3584: Protein of u 31.9 9.3E+02 0.02 28.5 15.2 19 365-383 683-701 (1201)
120 PTZ00419 valyl-tRNA synthetase 31.9 1.2E+02 0.0026 34.8 6.9 50 343-392 926-979 (995)
121 COG0525 ValS Valyl-tRNA synthe 31.5 81 0.0017 36.5 5.4 52 342-393 810-865 (877)
122 PF12128 DUF3584: Protein of u 31.4 9.4E+02 0.02 28.5 14.8 38 103-143 101-139 (1201)
123 PRK09343 prefoldin subunit bet 31.2 1.6E+02 0.0034 25.8 6.0 30 345-374 84-113 (121)
124 PF05700 BCAS2: Breast carcino 31.0 4.7E+02 0.01 24.9 11.6 54 228-282 76-130 (221)
125 PRK12705 hypothetical protein; 31.0 7.4E+02 0.016 27.1 16.5 13 387-399 141-153 (508)
126 COG4942 Membrane-bound metallo 31.0 7.1E+02 0.015 26.9 12.5 92 292-384 160-255 (420)
127 PF03670 UPF0184: Uncharacteri 30.7 2.1E+02 0.0045 24.6 6.5 44 346-389 26-73 (83)
128 TIGR00293 prefoldin, archaeal 30.4 1.7E+02 0.0036 24.8 6.0 40 337-376 84-123 (126)
129 TIGR01843 type_I_hlyD type I s 30.4 5.3E+02 0.011 25.2 12.7 40 342-381 140-179 (423)
130 PF05529 Bap31: B-cell recepto 30.4 2.7E+02 0.0059 25.4 7.8 27 155-181 12-41 (192)
131 PF06920 Ded_cyto: Dedicator o 30.3 19 0.00041 32.8 0.3 54 114-177 100-156 (178)
132 PF15290 Syntaphilin: Golgi-lo 30.3 4.5E+02 0.0097 27.4 9.8 63 333-400 76-143 (305)
133 TIGR03319 YmdA_YtgF conserved 30.3 7.3E+02 0.016 26.9 13.7 16 386-401 146-161 (514)
134 TIGR01005 eps_transp_fam exopo 29.8 2.3E+02 0.005 31.0 8.3 15 392-406 288-302 (754)
135 PRK14158 heat shock protein Gr 29.5 4.7E+02 0.01 25.2 9.4 40 343-382 44-83 (194)
136 PRK00106 hypothetical protein; 29.3 8.1E+02 0.017 27.0 13.8 38 332-369 115-152 (535)
137 cd04776 HTH_GnyR Helix-Turn-He 29.2 1.9E+02 0.0042 24.8 6.2 36 341-376 82-117 (118)
138 TIGR02231 conserved hypothetic 29.2 89 0.0019 32.8 5.0 31 347-377 72-102 (525)
139 PRK14155 heat shock protein Gr 29.1 1.7E+02 0.0037 28.3 6.4 43 341-383 15-57 (208)
140 KOG3119 Basic region leucine z 29.1 1.7E+02 0.0036 28.9 6.6 50 312-371 205-254 (269)
141 COG5509 Uncharacterized small 29.1 1.1E+02 0.0024 25.2 4.4 34 343-376 29-62 (65)
142 PF13747 DUF4164: Domain of un 28.7 3.6E+02 0.0077 22.7 9.9 38 342-379 42-79 (89)
143 PF15397 DUF4618: Domain of un 28.4 1.2E+02 0.0025 30.5 5.4 107 292-408 37-165 (258)
144 PF11126 Phage_DsbA: Transcrip 28.4 47 0.001 27.7 2.2 47 342-396 16-62 (69)
145 cd00890 Prefoldin Prefoldin is 28.1 2E+02 0.0044 23.8 6.1 39 325-363 87-125 (129)
146 KOG0977 Nuclear envelope prote 27.3 8.7E+02 0.019 27.1 12.0 30 296-325 95-124 (546)
147 PF03148 Tektin: Tektin family 27.3 6.6E+02 0.014 25.9 10.6 82 297-378 219-304 (384)
148 PF13809 Tubulin_2: Tubulin li 27.3 1.2E+02 0.0025 30.4 5.2 65 74-143 209-276 (345)
149 PF04799 Fzo_mitofusin: fzo-li 27.1 3.8E+02 0.0083 25.6 8.2 63 294-365 84-146 (171)
150 PF13600 DUF4140: N-terminal d 27.0 1.2E+02 0.0026 24.9 4.5 34 337-370 68-101 (104)
151 TIGR01843 type_I_hlyD type I s 26.7 6.1E+02 0.013 24.8 13.1 28 348-375 205-232 (423)
152 PF11853 DUF3373: Protein of u 26.6 64 0.0014 35.0 3.4 24 346-369 31-54 (489)
153 PF04156 IncA: IncA protein; 26.2 4.8E+02 0.01 23.4 10.1 41 342-382 105-145 (191)
154 PRK00106 hypothetical protein; 26.2 9.1E+02 0.02 26.6 13.5 55 336-390 98-152 (535)
155 PRK14151 heat shock protein Gr 26.1 3.1E+02 0.0068 25.8 7.5 42 342-383 23-64 (176)
156 PF07798 DUF1640: Protein of u 26.1 5.1E+02 0.011 23.7 14.0 29 346-374 73-101 (177)
157 PF07028 DUF1319: Protein of u 26.0 3E+02 0.0065 25.3 7.0 43 340-382 40-82 (126)
158 KOG1772 Vacuolar H+-ATPase V1 25.9 2.7E+02 0.0059 25.0 6.6 45 308-352 36-85 (108)
159 COG3883 Uncharacterized protei 25.9 6.1E+02 0.013 25.8 9.8 33 345-377 65-97 (265)
160 cd07666 BAR_SNX7 The Bin/Amphi 25.8 6.6E+02 0.014 24.9 10.0 23 353-375 177-199 (243)
161 PRK05729 valS valyl-tRNA synth 25.6 1.6E+02 0.0034 33.4 6.3 51 343-393 808-862 (874)
162 PF05667 DUF812: Protein of un 25.5 4.3E+02 0.0094 29.3 9.4 23 128-150 87-111 (594)
163 TIGR02338 gimC_beta prefoldin, 25.4 2E+02 0.0044 24.4 5.6 23 348-370 69-91 (110)
164 PF14265 DUF4355: Domain of un 25.4 4.2E+02 0.0092 22.5 8.2 37 333-370 37-73 (125)
165 PF12329 TMF_DNA_bd: TATA elem 25.3 3E+02 0.0065 22.4 6.3 36 342-377 36-71 (74)
166 PF09730 BicD: Microtubule-ass 25.2 2.8E+02 0.0062 31.6 8.1 66 337-402 255-321 (717)
167 PF11180 DUF2968: Protein of u 25.0 1.8E+02 0.0039 28.3 5.8 49 329-377 75-129 (192)
168 TIGR01010 BexC_CtrB_KpsE polys 25.0 6.9E+02 0.015 24.8 11.7 25 343-367 211-235 (362)
169 PRK14139 heat shock protein Gr 24.7 2.9E+02 0.0064 26.3 7.1 40 344-383 37-76 (185)
170 PF03194 LUC7: LUC7 N_terminus 24.3 6.5E+02 0.014 24.8 9.6 58 293-367 120-177 (254)
171 PLN02943 aminoacyl-tRNA ligase 24.1 1.5E+02 0.0034 34.0 6.0 51 343-393 886-940 (958)
172 TIGR00414 serS seryl-tRNA synt 24.1 2.5E+02 0.0053 29.3 7.0 68 311-378 36-108 (418)
173 PF07889 DUF1664: Protein of u 24.0 5.5E+02 0.012 23.3 9.2 64 336-403 58-121 (126)
174 TIGR03794 NHPM_micro_HlyD NHPM 23.9 7.7E+02 0.017 25.0 10.5 29 344-372 137-165 (421)
175 PF11855 DUF3375: Protein of u 23.8 3E+02 0.0065 29.2 7.7 37 151-187 23-61 (478)
176 PF02388 FemAB: FemAB family; 23.6 4E+02 0.0087 27.4 8.4 30 337-366 240-269 (406)
177 smart00544 MA3 Domain in DAP-5 23.6 3.6E+02 0.0078 22.0 6.6 77 125-209 32-109 (113)
178 cd09238 V_Alix_like_1 Protein- 23.6 6.4E+02 0.014 25.4 9.6 66 339-404 195-267 (339)
179 PRK14158 heat shock protein Gr 23.4 1.6E+02 0.0034 28.3 5.1 59 322-380 10-74 (194)
180 PRK13729 conjugal transfer pil 23.3 2.4E+02 0.0052 30.8 6.9 9 194-202 8-16 (475)
181 PF12323 HTH_OrfB_IS605: Helix 23.3 71 0.0015 23.0 2.2 27 148-178 11-37 (46)
182 PRK13455 F0F1 ATP synthase sub 23.2 5.8E+02 0.012 23.3 11.0 50 301-350 52-101 (184)
183 PRK14162 heat shock protein Gr 23.0 1.2E+02 0.0027 29.0 4.3 40 341-380 34-73 (194)
184 TIGR03007 pepcterm_ChnLen poly 23.0 3.7E+02 0.0081 27.7 8.0 27 343-369 201-227 (498)
185 PF03087 DUF241: Arabidopsis p 22.9 6.9E+02 0.015 24.0 16.0 38 341-378 193-230 (231)
186 PRK07739 flgK flagellar hook-a 22.7 4.1E+02 0.0088 28.3 8.4 63 335-397 160-222 (507)
187 PHA02599 dsbA double-stranded 22.6 73 0.0016 27.8 2.4 37 354-396 48-84 (91)
188 PF12325 TMF_TATA_bd: TATA ele 22.4 5.6E+02 0.012 22.9 9.0 12 344-355 49-60 (120)
189 PF08826 DMPK_coil: DMPK coile 22.4 1.6E+02 0.0035 23.7 4.2 28 333-360 33-60 (61)
190 PRK06665 flgK flagellar hook-a 22.4 3.8E+02 0.0082 29.5 8.3 34 339-372 164-197 (627)
191 PRK14154 heat shock protein Gr 22.3 3.9E+02 0.0084 26.1 7.5 40 343-382 56-95 (208)
192 PF04977 DivIC: Septum formati 22.0 3E+02 0.0064 21.0 5.5 28 343-370 21-48 (80)
193 cd00632 Prefoldin_beta Prefold 21.9 3E+02 0.0065 23.0 5.9 43 340-382 57-99 (105)
194 PHA02107 hypothetical protein 21.9 1.1E+02 0.0024 29.7 3.7 38 325-369 177-214 (216)
195 PLN02678 seryl-tRNA synthetase 21.8 5.4E+02 0.012 27.6 9.0 40 343-382 75-114 (448)
196 KOG2669 Regulator of nuclear m 21.8 9.3E+02 0.02 25.2 10.6 99 282-391 162-265 (325)
197 PF01025 GrpE: GrpE; InterPro 21.8 1E+02 0.0022 27.2 3.2 36 342-377 14-49 (165)
198 PF10018 Med4: Vitamin-D-recep 21.8 4.4E+02 0.0095 24.4 7.5 37 344-380 27-63 (188)
199 PRK13729 conjugal transfer pil 21.7 3E+02 0.0065 30.1 7.2 17 353-369 97-113 (475)
200 PRK05287 hypothetical protein; 21.7 8.2E+02 0.018 24.5 9.9 45 263-307 11-56 (250)
201 PF10883 DUF2681: Protein of u 21.6 3.4E+02 0.0073 23.4 6.1 35 347-381 31-65 (87)
202 TIGR01613 primase_Cterm phage/ 21.5 2E+02 0.0044 27.8 5.5 18 149-166 54-71 (304)
203 PF03836 RasGAP_C: RasGAP C-te 21.5 31 0.00067 30.5 0.0 85 315-401 8-92 (142)
204 PF03961 DUF342: Protein of un 21.4 5.9E+02 0.013 26.5 9.1 57 342-398 330-399 (451)
205 PRK00888 ftsB cell division pr 21.4 3.5E+02 0.0076 23.3 6.3 33 335-367 30-62 (105)
206 PF15070 GOLGA2L5: Putative go 21.3 6.1E+02 0.013 28.3 9.6 70 294-365 37-106 (617)
207 TIGR01837 PHA_granule_1 poly(h 21.3 1E+02 0.0023 26.9 3.2 30 337-366 83-116 (118)
208 PRK14156 heat shock protein Gr 21.2 3.4E+02 0.0075 25.7 6.7 40 343-382 31-70 (177)
209 PRK05683 flgK flagellar hook-a 21.1 9.2E+02 0.02 27.1 11.0 109 294-404 108-217 (676)
210 TIGR02338 gimC_beta prefoldin, 21.0 4E+02 0.0086 22.6 6.5 26 345-370 80-105 (110)
211 TIGR01000 bacteriocin_acc bact 21.0 3.9E+02 0.0085 27.6 7.7 19 20-38 71-89 (457)
212 PF02996 Prefoldin: Prefoldin 20.8 1.8E+02 0.004 24.0 4.4 38 342-379 73-110 (120)
213 PF05082 Rop-like: Rop-like; 20.7 1.4E+02 0.003 24.7 3.5 28 355-382 4-31 (66)
214 KOG4593 Mitotic checkpoint pro 20.7 1.3E+03 0.029 26.6 14.7 72 336-407 451-522 (716)
215 PF09304 Cortex-I_coil: Cortex 20.6 2.8E+02 0.006 24.9 5.6 33 345-377 36-68 (107)
216 PRK10361 DNA recombination pro 20.6 1.1E+03 0.025 25.7 15.5 61 347-407 68-136 (475)
217 KOG0250 DNA repair protein RAD 20.6 1.6E+03 0.034 27.3 14.3 48 344-391 370-418 (1074)
218 PRK10869 recombination and rep 20.4 1.1E+03 0.024 25.5 16.4 63 335-397 320-386 (553)
219 PF05529 Bap31: B-cell recepto 20.3 5.5E+02 0.012 23.4 7.8 10 344-353 159-168 (192)
220 KOG2391 Vacuolar sorting prote 20.3 6.9E+02 0.015 26.6 9.2 85 320-406 229-318 (365)
221 COG3937 Uncharacterized conser 20.1 97 0.0021 27.7 2.8 23 342-364 86-108 (108)
222 PLN02381 valyl-tRNA synthetase 20.1 2E+02 0.0044 33.6 6.0 30 343-372 994-1023(1066)
No 1
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.49 E-value=7.5 Score=44.62 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=44.1
Q ss_pred cCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHHHhhhhccccCCcchhchHHHHHHHhhhhhcC
Q 014917 165 AGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIK 234 (416)
Q Consensus 165 ~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ~AIsGLK~nAdi~RiD~Ea~~L~~kl~~~~ 234 (416)
....+-|..+...++...+.-..++.++--.++++..+ |.....++. .+..++.++..++.+++...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~--~~~~le~~~~~~~~~~~~~~ 315 (1163)
T COG1196 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKE--EIEELEGEISLLRERLEELE 315 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666655566666666 766666665 67777777777777776655
No 2
>PRK11637 AmiB activator; Provisional
Probab=88.82 E-value=7.5 Score=39.51 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=6.4
Q ss_pred hhHHHHHHhhhHhhh
Q 014917 309 TSKAEKRILENRSQK 323 (416)
Q Consensus 309 tskAEkRI~d~R~QK 323 (416)
....++.|.+...++
T Consensus 56 i~~~~~~i~~~~~~~ 70 (428)
T PRK11637 56 IAAKEKSVRQQQQQR 70 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 3
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=88.74 E-value=8.3 Score=35.96 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=50.7
Q ss_pred HhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh--------hHHHHHhHHHHHH
Q 014917 320 RSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN--------AKEEREQFDEANN 391 (416)
Q Consensus 320 R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~--------~rEERdqFdEAnn 391 (416)
..+-+.+..|=+.|.-+....-.++..+|..|++.+.+|+.++..+.........+... ..+|=+.+...|.
T Consensus 101 ~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 101 QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666555555556777788888888888888888777777666555443 3444455666666
Q ss_pred HHHHHHh
Q 014917 392 KILVYFK 398 (416)
Q Consensus 392 qIi~~Lk 398 (416)
|+-.+|+
T Consensus 181 ql~~~l~ 187 (189)
T PF10211_consen 181 QLKAQLE 187 (189)
T ss_pred HHHHHHh
Confidence 6666654
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.73 E-value=48 Score=38.79 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=18.8
Q ss_pred cccCCcchhchHHHHHHHhhhhhcCC
Q 014917 210 LKINADLPRIDAEARGLIGKLDKIKP 235 (416)
Q Consensus 210 LK~nAdi~RiD~Ea~~L~~kl~~~~~ 235 (416)
++.-.+|.|+..++..|+++|+....
T Consensus 788 ~~~v~~i~r~~~ei~~l~~qie~l~~ 813 (1311)
T TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAA 813 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888888888888887664
No 5
>PRK09039 hypothetical protein; Validated
Probab=86.38 E-value=24 Score=35.71 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=42.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDR 406 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr 406 (416)
+|..|..|.+.|++||..++..|.++..+. ++-+.|+++-...|-.+|..|..++.|
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~---~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRD---RESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899999999999999999999888 455566666666666666555555444
No 6
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=84.34 E-value=18 Score=29.99 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=64.8
Q ss_pred HHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH---
Q 014917 301 FSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR--- 377 (416)
Q Consensus 301 lsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~--- 377 (416)
..+-..+|..+++..+.........+- +..|...+-+||...|..++.+.++|+.-..-|... ..|.+
T Consensus 6 v~~ev~~sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~n----p~kF~l~~ 76 (97)
T PF09177_consen 6 VKDEVQSSLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKN----PSKFNLSE 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----HHHHT-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccccCCCH
Confidence 345566777777777777665555444 778899999999999999999999999988877655 33433
Q ss_pred hhHHHHHhHHHHHHHHHHHHh
Q 014917 378 NAKEEREQFDEANNKILVYFK 398 (416)
Q Consensus 378 ~~rEERdqFdEAnnqIi~~Lk 398 (416)
..-..|.+|-.+..+-|.++|
T Consensus 77 ~Ei~~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 77 EEISRRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 233467888888877777664
No 7
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.31 E-value=16 Score=45.01 Aligned_cols=55 Identities=33% Similarity=0.467 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVY 396 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~ 396 (416)
+++-.|+++|+++.+++|..+.|+....+++..+++++++|=.++|+.++....-
T Consensus 932 ~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 932 RKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455899999999999999999999999999999999999999988888766543
No 8
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.26 E-value=17 Score=36.42 Aligned_cols=154 Identities=19% Similarity=0.302 Sum_probs=94.6
Q ss_pred cCCcchhchHHHHHHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHH--HHHhhhhhhhhhhhhc---ccCCC
Q 014917 212 INADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQ--IQLCSKLEDLFLKKKS---LRNGD 286 (416)
Q Consensus 212 ~nAdi~RiD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaq--irlCS~lE~llLkkks---l~~Gd 286 (416)
+-.+|..||+.+.++.+|++..+.-- +++. .-++-|+.-+++ -||-+|=| +|++.- -.+|-
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i-------~~~~-----~eik~l~~eI~~~~~~I~~r~~--~l~~raRAmq~nG~ 115 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEI-------DQSK-----AEIKKLQKEIAELKENIVERQE--LLKKRARAMQVNGT 115 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCC
Confidence 35688899999999999888776322 1111 223333333332 22333222 122211 22343
Q ss_pred Ccc---------hhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHH
Q 014917 287 SPE---------QHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDE 357 (416)
Q Consensus 287 Spe---------~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~Lekqkde 357 (416)
+-. -....++++-. .+.+.++++-|+++--..+..|.- |..-+...-..|.+=+.+||.+.+.
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtA-----i~~iv~aDk~ile~qk~dk~~Le~---kq~~l~~~~e~l~al~~e~e~~~~~ 187 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTA-----ISVIVDADKKILEQQKEDKKSLEE---KQAALEDKLETLVALQNELETQLNS 187 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 01345666655 356789999999987666666653 3334444445666777788888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhHHHHHhHH
Q 014917 358 LEIALKKVNTSLVTTRARLRNAKEEREQFD 387 (416)
Q Consensus 358 LEAeLkkVn~sL~aA~aRl~~~rEERdqFd 387 (416)
|+.+....|..+.++.++...+.+|.....
T Consensus 188 L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 188 LNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888888888888888888888888876654
No 9
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.88 E-value=40 Score=31.55 Aligned_cols=106 Identities=28% Similarity=0.261 Sum_probs=65.5
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
+...+++.-.+.|-....+.+.+|.+...+-+++..-| +-+.-=.++..++..|+++..+|.++|++....=
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r-----~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D--- 133 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGR-----EESEEREELLEELEELKKELKELKKELEKYSEND--- 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 33445666666677778888888888877777774433 2334445678899999999999999998554321
Q ss_pred HHHHHhhHHHHHhHHHH-------HHHHHHHHhhhhhhhhHH
Q 014917 373 RARLRNAKEEREQFDEA-------NNKILVYFKSKMSCQDRL 407 (416)
Q Consensus 373 ~aRl~~~rEERdqFdEA-------nnqIi~~Lk~K~s~~dr~ 407 (416)
-.++...+++-..+-+| ---|..+++.|. ..|+.
T Consensus 134 p~~i~~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~-~~~~~ 174 (188)
T PF03962_consen 134 PEKIEKLKEEIKIAKEAANRWTDNIFSLKSYLKKKF-GMDEE 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc-CCCHH
Confidence 12333444443333333 334677777764 34443
No 10
>smart00338 BRLZ basic region leucin zipper.
Probab=81.47 E-value=8.7 Score=29.51 Aligned_cols=45 Identities=31% Similarity=0.404 Sum_probs=31.4
Q ss_pred hHHHhhhhhhhhhhhHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 323 KEEALHFRLAKCNEVCQLEKD---LTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKe---l~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
++-|..+|..|-..+..+|.+ |..|.+.|..+.+.|+.++..+..
T Consensus 14 R~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 14 REAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999988888764 345666666666666666555443
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=81.39 E-value=54 Score=36.20 Aligned_cols=6 Identities=33% Similarity=0.955 Sum_probs=3.3
Q ss_pred hhcCcH
Q 014917 163 CLAGGK 168 (416)
Q Consensus 163 CL~GGk 168 (416)
+++||.
T Consensus 654 ~~tgG~ 659 (1164)
T TIGR02169 654 AMTGGS 659 (1164)
T ss_pred CccCCC
Confidence 446663
No 12
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.70 E-value=21 Score=33.88 Aligned_cols=70 Identities=14% Similarity=0.306 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQD 405 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~d 405 (416)
+...--.++..||..|++|.+.|+...+++...+++.+..+....++-++.++...+|.-.+..-...++
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566677777777777777777777777777776666666667777666666665554444443
No 13
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=80.32 E-value=8.6 Score=33.23 Aligned_cols=58 Identities=24% Similarity=0.392 Sum_probs=49.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhhH-HHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 014917 348 IQELEKQKDELEIALKKVNTSL-VTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQD 405 (416)
Q Consensus 348 I~~LekqkdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~d 405 (416)
-..+++.++.++.||..+.++| ..|+--...+|.||..+..-+.+.-.-|+-+...++
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~ 68 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999 889999999999999999999988877776664443
No 14
>PRK11281 hypothetical protein; Provisional
Probab=80.22 E-value=28 Score=40.84 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=53.9
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhh---hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLA---KCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~---K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
++.++-+.=.+.|......|.+++-+...+.+ +++=... +.+.-.....++...+..++.+..+.+++|...|+.|
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le-~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELE-ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777777777766655 3331100 0111112223455555566666666666666666666
Q ss_pred HHHHHHHHhhH----HHHHhHHHHHHHH
Q 014917 370 VTTRARLRNAK----EEREQFDEANNKI 393 (416)
Q Consensus 370 ~aA~aRl~~~r----EERdqFdEAnnqI 393 (416)
..++.+...++ +-+.+-.|+++++
T Consensus 152 i~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 152 VSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 66555444333 3355666666654
No 15
>PRK11637 AmiB activator; Provisional
Probab=79.87 E-value=18 Score=36.88 Aligned_cols=80 Identities=8% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHHhhhHhhhHHHhhhhh---hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHH
Q 014917 311 KAEKRILENRSQKEEALHFRL---AKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFD 387 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv---~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFd 387 (416)
..++++-+.+.|.++..+-.- .+.+++...-+.+..+|..++.+.++++.+|+.++..++.....+..++++-++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333 22223333333445566666666666666666666666666666666665544444
Q ss_pred HHH
Q 014917 388 EAN 390 (416)
Q Consensus 388 EAn 390 (416)
+.-
T Consensus 124 ~~l 126 (428)
T PRK11637 124 RLL 126 (428)
T ss_pred HHH
Confidence 433
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.47 E-value=1.3e+02 Score=35.09 Aligned_cols=62 Identities=27% Similarity=0.346 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYF 397 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~L 397 (416)
++.....++..++.++++++.+|+..++......+....++.....++++..+.......++
T Consensus 853 ~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555555555555555555555555555544444444443
No 17
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=79.41 E-value=4.4 Score=31.71 Aligned_cols=51 Identities=27% Similarity=0.507 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHH----HHHHHHhhHHHHHhHHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVT----TRARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~a----A~aRl~~~rEERdqFdEAnnqI 393 (416)
++.+||..|+|+.+.++.++.+++..|+. +.|--.....+|+.+.+...+|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~ 55 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEEL 55 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998885 3444445566666666666554
No 18
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.85 E-value=26 Score=34.06 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhHH
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRL 407 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr~ 407 (416)
..-.|+..|+..|...|.....+|..+|.-+|.-..=++.++.||.+..+.-++...-+..=....|+.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577889999999999999999999999999999999999999998887776665544433444443
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.45 E-value=48 Score=34.11 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHH
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANN 391 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnn 391 (416)
+...++.....|..++++.++|..+.+.....++.....+.+.+.+.+-++++-+
T Consensus 204 i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~ 258 (562)
T PHA02562 204 IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALN 258 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 3344444455566666666666666666666666666666666655555554433
No 20
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.01 E-value=80 Score=31.16 Aligned_cols=129 Identities=20% Similarity=0.372 Sum_probs=96.0
Q ss_pred HhhhhccccCC-----cchhchHHHHHHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHHHHHhhhhhhhhhh
Q 014917 204 QGAIAGLKINA-----DLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLK 278 (416)
Q Consensus 204 Q~AIsGLK~nA-----di~RiD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaqirlCS~lE~llLk 278 (416)
|+||.++---+ -|.+||+|.+.++.+|..+..-+ +
T Consensus 18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gp----------a------------------------------ 57 (218)
T KOG1655|consen 18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGP----------A------------------------------ 57 (218)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCc----------c------------------------------
Confidence 45555543333 37899999999999999884322 1
Q ss_pred hhcccCCCCcchhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHH
Q 014917 279 KKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDEL 358 (416)
Q Consensus 279 kksl~~GdSpe~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeL 358 (416)
..+.|..-|+||- -|++.|+-++--.-++|-..-.|=..+.-|.--+=+..|.---.++
T Consensus 58 -----------q~~~KqrAlrVLk----------QKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~m 116 (218)
T KOG1655|consen 58 -----------QNALKQRALRVLK----------QKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEM 116 (218)
T ss_pred -----------hhHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224555566643 3788888777778889999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhh
Q 014917 359 EIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKS 399 (416)
Q Consensus 359 EAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~ 399 (416)
..+-|+|||. .+.+.+.|=.-.-+.++.|-+.|--
T Consensus 117 K~~ykkvnId------~IedlQDem~Dlmd~a~EiQE~Lgr 151 (218)
T KOG1655|consen 117 KKQYKKVNID------KIEDLQDEMEDLMDQADEIQEVLGR 151 (218)
T ss_pred HHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999996 5667777765555667778777753
No 21
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=75.22 E-value=94 Score=34.42 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHh
Q 014917 355 KDELEIALKKVN 366 (416)
Q Consensus 355 kdeLEAeLkkVn 366 (416)
.++++.++..++
T Consensus 877 ~~~l~~~l~~l~ 888 (1164)
T TIGR02169 877 LRDLESRLGDLK 888 (1164)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 22
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.76 E-value=91 Score=29.85 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=38.7
Q ss_pred hcCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHHHhhhhccccCCcchhchHHHHHHHhhhhhcC
Q 014917 164 LAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGAIAGLKINADLPRIDAEARGLIGKLDKIK 234 (416)
Q Consensus 164 L~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ~AIsGLK~nAdi~RiD~Ea~~L~~kl~~~~ 234 (416)
+||.-.....|.++|.|++.-|.+|.--+-. ..-.++.....+. .|+.++..|.++.+...
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~-~~~~~~~~e~~l~---------~L~~d~~~L~~k~~~~~ 72 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNP-QKQQLDPLEKELE---------SLEQDVENLQEKATKVS 72 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 5666667778889999999999998774332 2223333333333 44666666776666554
No 23
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=72.75 E-value=63 Score=31.31 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 352 EKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 352 ekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
..+.+..+++|..+...++++.+.+.
T Consensus 188 ~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 188 RAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444555555555444444443
No 24
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.51 E-value=2.3e+02 Score=33.93 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
+|..+|+.+..+.+++..++...+..+.+++.++..+.+++
T Consensus 925 el~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 925 EIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555555554444444444
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.57 E-value=47 Score=31.81 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
+.+.-.+...+|++|+.+.++|..||.+....+..+.+.+.
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455666666666666666666666555544443
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=69.87 E-value=1.8e+02 Score=32.07 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=7.7
Q ss_pred CCcchhhHhhhhHH
Q 014917 286 DSPEQHGVKVHKLK 299 (416)
Q Consensus 286 dSpe~ha~kVdKLK 299 (416)
+.++.|..+++++.
T Consensus 468 ~~~~~~~~~~~~~~ 481 (880)
T PRK02224 468 ETIEEDRERVEELE 481 (880)
T ss_pred hhHHHHHHHHHHHH
Confidence 44555666666553
No 27
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=69.42 E-value=96 Score=28.76 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=58.0
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH----hHHHHHHHHHHHHh
Q 014917 323 KEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEERE----QFDEANNKILVYFK 398 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERd----qFdEAnnqIi~~Lk 398 (416)
++.--..|-....++-+.|-..-.|...|..|.+.|+++-+++...+...........|.-. .|+..+.+-..-++
T Consensus 66 ~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~ 145 (158)
T PF09744_consen 66 YEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLR 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333456666778888899999999999999999999999999777665554443333222 36666666666666
Q ss_pred hhhhhhhH
Q 014917 399 SKMSCQDR 406 (416)
Q Consensus 399 ~K~s~~dr 406 (416)
+.+.-.||
T Consensus 146 ~~~e~ver 153 (158)
T PF09744_consen 146 KLKEHVER 153 (158)
T ss_pred HHHHHHHH
Confidence 65554444
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.75 E-value=79 Score=31.49 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=36.0
Q ss_pred hhhHhhccCCChhHHHHHHHHHH-hhhcCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHHHh
Q 014917 139 ITLSMILEAPDEEEVSLLLEIFG-LCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQG 205 (416)
Q Consensus 139 I~lSmileaP~eeEvsLLlEiFg-lCL~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ~ 205 (416)
.+..+....| ++|++. .| +-+-+.|.+-=..|..+..++..-.+.|.+--.+
T Consensus 59 ~~~A~~~~~P-------~Lely~~~c--------~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~ 111 (325)
T PF08317_consen 59 YVVAGYCTVP-------MLELYQFSC--------RELKKYISEGRQIFEEIEEETYESNPPLFREYYT 111 (325)
T ss_pred HHHHhccCCh-------HHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHc
Confidence 3344545555 577888 66 5556667777788999999998888888854333
No 29
>PRK09039 hypothetical protein; Validated
Probab=67.92 E-value=1.4e+02 Score=30.36 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH-HHhhHHHHHhH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRAR-LRNAKEEREQF 386 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aR-l~~~rEERdqF 386 (416)
|.++|..+|.+..+..+++..+...|+.|-++ ......=|.+|
T Consensus 156 le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 156 LEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455555555555555555555555555544 44444444444
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.84 E-value=1.9e+02 Score=34.97 Aligned_cols=227 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHhccccchhhccChHHHHHH------HHhhhhcccc-----CCcchhchHHHHHHHhhhhhcCCCCCCCccccc
Q 014917 177 SIQDLATVFSTYQDEVLVKREELLQY------AQGAIAGLKI-----NADLPRIDAEARGLIGKLDKIKPVQWPSDEVVD 245 (416)
Q Consensus 177 siqdLA~aFs~y~DEVlvkReELLq~------aQ~AIsGLK~-----nAdi~RiD~Ea~~L~~kl~~~~~~~~~~~~~~~ 245 (416)
+++++..+++.-.|..=+.++++.+. .-..|.-|++ -+++-|++.+...|.+.|-+..+.......+..
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~ 858 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKK 858 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Q ss_pred ccccchhhccHHHHHHHHHHH-----HHhhhhhhhhhhhhcccCCCCcchhhHhhhhHHHHHHHHhhhhhHHHHHHhhhH
Q 014917 246 KLSEETTTVSTEALKETLEQI-----QLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENR 320 (416)
Q Consensus 246 k~~~~~~~~~~ea~kealaqi-----rlCS~lE~llLkkksl~~GdSpe~ha~kVdKLKvlsESLanStskAEkRI~d~R 320 (416)
...+-- ..++.++.-+.++ - -.+.+.|==+=-.+.. -....|-.||+++.-=-+-|+.-+.+....|--+=
T Consensus 859 ~l~~~~--~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~-e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~ 934 (1293)
T KOG0996|consen 859 RLKELE--EQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGG-EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSD 934 (1293)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhc-hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q ss_pred hhhHHHhhhhhhhhhhhHHHHH---HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH----HhHHHHHHHH
Q 014917 321 SQKEEALHFRLAKCNEVCQLEK---DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER----EQFDEANNKI 393 (416)
Q Consensus 321 ~QKEeAl~fRv~K~~Ev~~~EK---el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER----dqFdEAnnqI 393 (416)
+--..+..-=-.=+.++..+|+ .|..+..+++....|++.++++...++-.+..-+..++.+= .+.++-.+..
T Consensus 935 ~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~r 1014 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAER 1014 (1293)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHhhhhhhhhHHH
Q 014917 394 LVYFKSKMSCQDRLL 408 (416)
Q Consensus 394 i~~Lk~K~s~~dr~~ 408 (416)
|. ++.|....++.+
T Consensus 1015 Id-~~~K~e~~~~~l 1028 (1293)
T KOG0996|consen 1015 ID-IENKLEAINGEL 1028 (1293)
T ss_pred cc-HHHHHHHHHHHH
No 31
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.12 E-value=70 Score=35.83 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=68.7
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhh--------hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 014917 297 KLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKC--------NEVCQLEKDLTVEIQELEKQKDELEIALKKVNTS 368 (416)
Q Consensus 297 KLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~--------~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~s 368 (416)
.++--.++|...+.+...||-+ -..|-+.|.-|+.+- -.++..|++...|+..+..+.+.|.+.+++++..
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~-a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEE-AKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444455433 345556666665532 4588999999999999999999999999999988
Q ss_pred HHHHHHHHHhhHHHH----HhHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 014917 369 LVTTRARLRNAKEER----EQFDEANNKILVYFKSKMSCQDRLLLVELKQ 414 (416)
Q Consensus 369 L~aA~aRl~~~rEER----dqFdEAnnqIi~~Lk~K~s~~dr~~~~~~~~ 414 (416)
++.-...+. .++.+ -.+.+...+.|...=+++++.=..++-++|.
T Consensus 662 ~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~ 710 (717)
T PF10168_consen 662 LDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKN 710 (717)
T ss_pred HHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887544333 22211 1334444444444444444444444444443
No 32
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=67.08 E-value=63 Score=29.13 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH----HHHHHH-HhhHHHHHhHHHHHHHHHHHHh
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLV----TTRARL-RNAKEEREQFDEANNKILVYFK 398 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~----aA~aRl-~~~rEERdqFdEAnnqIi~~Lk 398 (416)
.+.+++.+-|+.++.+-.+|+-|+|++-.... .....+ .....||..+.|.-+++.+.+.
T Consensus 20 ~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~ 84 (131)
T PF11068_consen 20 ELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLE 84 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888777654 344444 3566788888899999888775
No 33
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=65.38 E-value=1.4e+02 Score=34.99 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=23.5
Q ss_pred hhhhccccCCcchhchHHHHHHHhhhhhcCCCCCCCcccc
Q 014917 205 GAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVV 244 (416)
Q Consensus 205 ~AIsGLK~nAdi~RiD~Ea~~L~~kl~~~~~~~~~~~~~~ 244 (416)
++..--++-++=.|.|.| +|+.++.+..+.|.+-.+-+
T Consensus 372 ~~~~e~q~~~qe~~~e~e--qLr~elaql~a~r~q~eka~ 409 (980)
T KOG0980|consen 372 GELQEQQREAQENREEQE--QLRNELAQLLASRTQLEKAQ 409 (980)
T ss_pred HHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 333334455566666666 88888888877775544444
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=63.85 E-value=64 Score=32.40 Aligned_cols=31 Identities=35% Similarity=0.586 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
+..-|+++..|+..||+++++|++|++.+..
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555443
No 35
>PRK14127 cell division protein GpsB; Provisional
Probab=63.43 E-value=13 Score=32.75 Aligned_cols=60 Identities=15% Similarity=0.177 Sum_probs=53.3
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 323 KEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
|+=.-.||.-...||.+---+|..++..|.++..+|..++..++.+|.....++...++.
T Consensus 14 KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 14 KEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred CccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 343456899999999999999999999999999999999999999999999999876554
No 36
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=63.23 E-value=24 Score=30.04 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQD 405 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~d 405 (416)
|..||.++|....+....|..|+..|.... ..-|.|..+++=-+.|-.+|+..+.++-
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~e----Ls~e~R~~lE~E~~~l~~~l~~~E~eL~ 60 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRE----LSPEARRSLEKELNELKEKLENNEKELK 60 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccC----CChHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 567888888888888888888887765442 5677888888877888888887776654
No 37
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=62.74 E-value=95 Score=31.43 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=43.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
.|+..++...++.|++++.+...+.+.++||.++..+|... +..+..++.|+-+.
T Consensus 207 ~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l----~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 207 EELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRL----SKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 44555555666778999999999999999999999998764 45677888887664
No 38
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=62.34 E-value=1.2e+02 Score=32.97 Aligned_cols=45 Identities=13% Similarity=0.261 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKE 381 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rE 381 (416)
...-..++..+|..++.+.++++.++..+...+..+..++...++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666666666666665544
No 39
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=61.70 E-value=1.3e+02 Score=27.69 Aligned_cols=84 Identities=29% Similarity=0.314 Sum_probs=56.3
Q ss_pred HhhhhhHHHHHHhhhHhhhHHHhhh-hhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 305 LVNSTSKAEKRILENRSQKEEALHF-RLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 305 LanStskAEkRI~d~R~QKEeAl~f-Rv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
|..-...+++.|.+.-.|=+.||.- +..-..+.-.--+.+..++..|+.+.+.+..+..++..+|.....++..++.+|
T Consensus 56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555666543 334444444455667778888888888888888888888888888888888887
Q ss_pred HhHHH
Q 014917 384 EQFDE 388 (416)
Q Consensus 384 dqFdE 388 (416)
+.+-.
T Consensus 136 ~~l~a 140 (221)
T PF04012_consen 136 EELKA 140 (221)
T ss_pred HHHHH
Confidence 66543
No 40
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.48 E-value=1.9e+02 Score=32.71 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=17.8
Q ss_pred hhhhhhhhhhhhhhHhhccCCChh--HHHHHHHHH
Q 014917 128 DVFLFSQALEGITLSMILEAPDEE--EVSLLLEIF 160 (416)
Q Consensus 128 dVFL~SqALEgI~lSmileaP~ee--EvsLLlEiF 160 (416)
-|||.+=+|-.|..-+-+-.|..+ ++...-.||
T Consensus 341 Tt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~ 375 (782)
T PRK00409 341 TVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIF 375 (782)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCccccccceEE
Confidence 466666666666555555556542 444433443
No 41
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=61.36 E-value=65 Score=29.02 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhh
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNA 379 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~ 379 (416)
..-.||..|.++...||.+|.+++..|..+...+...
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3446777777777777777777777777766555544
No 42
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.98 E-value=82 Score=28.06 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhH---HHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhh--HHHHHHhhhc
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSL---VTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQD--RLLLVELKQM 415 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL---~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~d--r~~~~~~~~~ 415 (416)
+..|++.|+++||+|.+|+-+.-... .+...++...+.+=.....=.+..+.-|--|..+.+ |.=+..+|.|
T Consensus 35 l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 35 LQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34677778888888888776654444 333444444444444444445556666666655443 3335566655
No 43
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=60.61 E-value=78 Score=34.30 Aligned_cols=87 Identities=22% Similarity=0.299 Sum_probs=43.7
Q ss_pred CCCCcchhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014917 284 NGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALK 363 (416)
Q Consensus 284 ~GdSpe~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLk 363 (416)
.||.|. |.|+-|.-.+-.--.+.+.-+.+|+.+|+|=-..|-+-.+-=.+....|.+|=.++++++++|..++.
T Consensus 53 egDTP~------DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~ 126 (472)
T TIGR03752 53 EGDTPA------DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQ 126 (472)
T ss_pred CCCCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 467765 44444444444444455555555555555544443333333344444555555555555555555555
Q ss_pred HHhhhHHHHHHHH
Q 014917 364 KVNTSLVTTRARL 376 (416)
Q Consensus 364 kVn~sL~aA~aRl 376 (416)
+....|..-..||
T Consensus 127 ~~~~~l~~l~~~l 139 (472)
T TIGR03752 127 QLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444444
No 44
>PRK03918 chromosome segregation protein; Provisional
Probab=60.38 E-value=1.4e+02 Score=32.60 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
.+++.++++..+++.+++.+...+..+...+....+.+
T Consensus 200 ~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~ 237 (880)
T PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELK 237 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333333
No 45
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.69 E-value=79 Score=37.47 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHHhccccchhhccChHHHHHHHHhh
Q 014917 171 HSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQGA 206 (416)
Q Consensus 171 h~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ~A 206 (416)
|.-+...++-+-+-++ |+++-+.+|++|+++.+.+
T Consensus 264 ~~ki~re~~~~Dk~i~-~ke~~l~erp~li~~ke~~ 298 (1141)
T KOG0018|consen 264 RGKIRRELQKVDKKIS-EKEEKLAERPELIKVKENA 298 (1141)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhhhHHhhcchhh
Confidence 3445556665555554 6777888999999998876
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=59.69 E-value=68 Score=24.62 Aligned_cols=52 Identities=31% Similarity=0.382 Sum_probs=32.7
Q ss_pred HHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHH---HHHHHHHHHhHHHHHHHHHHH
Q 014917 311 KAEKRILENRSQKEEALHFRLAKCNEVCQLEKDL---TVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel---~~EI~~LekqkdeLEAeLkkV 365 (416)
+.++|..-|| +-|-.||..|-..+..+|..+ ..|...|.++.+.|..++..+
T Consensus 5 k~~~rr~rNR---~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 5 KRERRRERNR---EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 578899999999998887643 344455555544444444433
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.18 E-value=2.2e+02 Score=29.38 Aligned_cols=94 Identities=18% Similarity=0.105 Sum_probs=58.8
Q ss_pred hHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhh--hh-----------hhhhhHHHHHHHHHHHHHHHHhHHHH
Q 014917 292 GVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFR--LA-----------KCNEVCQLEKDLTVEIQELEKQKDEL 358 (416)
Q Consensus 292 a~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fR--v~-----------K~~Ev~~~EKel~~EI~~LekqkdeL 358 (416)
-.++..|......|..-....+..|.+...+.++..... .. .-.+...--+.|..||..|+.+..++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 456666766666777777777666664433333222211 11 11122333466778888888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHhhHHHHHh
Q 014917 359 EIALKKVNTSLVTTRARLRNAKEEREQ 385 (416)
Q Consensus 359 EAeLkkVn~sL~aA~aRl~~~rEERdq 385 (416)
+.+|+.++..|..+.........|++.
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777776666544
No 48
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=58.81 E-value=1.5e+02 Score=33.21 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.7
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH
Q 014917 351 LEKQKDELEIALKKVNTSLVTTRARLRNAKEERE 384 (416)
Q Consensus 351 LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERd 384 (416)
+..++.+||.|++++...|....-++.....|..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999988888888888887777764
No 49
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=57.85 E-value=1.3e+02 Score=26.16 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=61.7
Q ss_pred chhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhh----------h------------------------
Q 014917 289 EQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAK----------C------------------------ 334 (416)
Q Consensus 289 e~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K----------~------------------------ 334 (416)
+...+...+|+-.-+.|..+....+..|.++..=++ ++.+=-.+ +
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e-~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~ 87 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKE-TLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYS 87 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEE
Confidence 344566788888888999999999999999977774 34332211 1
Q ss_pred --hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 014917 335 --NEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKE 381 (416)
Q Consensus 335 --~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rE 381 (416)
-.+..+.+.+..-|..|+++.+.|+.+|.+++..++.-...+.....
T Consensus 88 vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 88 AEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 04556666666777777777777777777777776666666555443
No 50
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=57.57 E-value=24 Score=29.02 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
..++..|+.+.++|++++..++..++.+.+++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777777888888888888877777777654
No 51
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.89 E-value=1.4e+02 Score=26.19 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=49.6
Q ss_pred hhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 014917 291 HGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 291 ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn 366 (416)
|+.-+..|.-+.+-+. .....|.+.+...+.|-.--......-..-+..|..||..++++.++|..|=+-+-
T Consensus 54 Ha~~~~~L~~lr~e~~----~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 54 HAEDIKELQQLREELQ----ELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777655544 34556666666666666555556666677778888888888888888887754443
No 52
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.39 E-value=1.6e+02 Score=33.30 Aligned_cols=58 Identities=26% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 014917 311 KAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTS 368 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~s 368 (416)
.|+..+.+...+-++.+.==..+..++.+...++..+..++++.+.+|+.++++++..
T Consensus 506 ~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443344444555555555555566666666666555554443
No 53
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.92 E-value=1e+02 Score=34.76 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.2
Q ss_pred hhhhhhhhhhhhhhhHhhccCCC
Q 014917 127 RDVFLFSQALEGITLSMILEAPD 149 (416)
Q Consensus 127 rdVFL~SqALEgI~lSmileaP~ 149 (416)
-.+||..=++-.+..-+.+.-|.
T Consensus 335 KSTlLK~i~~~~l~aq~G~~Vpa 357 (771)
T TIGR01069 335 KTVTLKTLGLLALMFQSGIPIPA 357 (771)
T ss_pred chHHHHHHHHHHHHHHhCCCccC
Confidence 45566665655544444445553
No 54
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.12 E-value=93 Score=37.69 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhccc--hhHHHHHHHHHHHHHhhh
Q 014917 50 RQTAKRLEEVSVSCRG--IERVQLLRRWLVALKEVE 83 (416)
Q Consensus 50 k~T~kRLEeaAvs~rG--~ERvqlLRRWL~aLkeie 83 (416)
++-++|..+.|--+|+ ++-++.||--...++++.
T Consensus 1449 ~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1449 QQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666655554 345566666666666554
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.67 E-value=2e+02 Score=31.18 Aligned_cols=77 Identities=22% Similarity=0.146 Sum_probs=35.5
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 294 KVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 294 kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
+++.|..--..+.......+..+.....+.+++..=+..-..+....=.++..|...|++|+++++++++..+.++.
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443344444444444555555555555543222111111111124445555666666666666665555543
No 56
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.35 E-value=2.3e+02 Score=28.13 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=11.3
Q ss_pred HHHHhhhhhHHHHHHhhhHhhhH
Q 014917 302 SESLVNSTSKAEKRILENRSQKE 324 (416)
Q Consensus 302 sESLanStskAEkRI~d~R~QKE 324 (416)
-|.|-|..+.-|..|-+.|.|+.
T Consensus 54 ~e~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 54 LEDLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555443
No 57
>PRK02224 chromosome segregation protein; Provisional
Probab=53.95 E-value=3.4e+02 Score=29.98 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=12.1
Q ss_pred hhccCCChhHHHHHHHHHHh
Q 014917 143 MILEAPDEEEVSLLLEIFGL 162 (416)
Q Consensus 143 mileaP~eeEvsLLlEiFgl 162 (416)
.++..+..+=..++=++||+
T Consensus 142 ~~l~~~p~~R~~ii~~l~~l 161 (880)
T PRK02224 142 KLINATPSDRQDMIDDLLQL 161 (880)
T ss_pred HHHcCCHHHHHHHHHHHhCC
Confidence 34454445555667777776
No 58
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=53.94 E-value=2.5e+02 Score=28.32 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQF 386 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 386 (416)
++..-..++..||..|+.+.++|+.+-.+.....|.-...+....+||+.-
T Consensus 68 ~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl 118 (314)
T PF04111_consen 68 ELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSL 118 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445578889999999999998888888999998888888888887543
No 59
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.23 E-value=1.2e+02 Score=34.23 Aligned_cols=76 Identities=21% Similarity=0.348 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh-hHHHHHhHHHHHHHHHHHHhhhhhhhhH------HHHHH
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN-AKEEREQFDEANNKILVYFKSKMSCQDR------LLLVE 411 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~-~rEERdqFdEAnnqIi~~Lk~K~s~~dr------~~~~~ 411 (416)
..=+.+..|++.|+...++|.+++-++...|..+..+.+. .+..| --++-..=|..|..+-.+.++ +-|-+
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~r--ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~ 506 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDR--EIRARDRRIERLEKELEEKKKRVEELERKLAE 506 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999888877761 22222 222333334444443333322 23567
Q ss_pred hhhcC
Q 014917 412 LKQMW 416 (416)
Q Consensus 412 ~~~~~ 416 (416)
+++||
T Consensus 507 l~k~~ 511 (652)
T COG2433 507 LRKMR 511 (652)
T ss_pred HHHHH
Confidence 77776
No 60
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.70 E-value=4.2e+02 Score=30.01 Aligned_cols=151 Identities=25% Similarity=0.233 Sum_probs=93.4
Q ss_pred chhhccHHHHHHHHHH--HHHhhhhhhhhhhhhc-ccCCCCcchhhHhhhhHHHHHHHHhhhhhHHHHHHh-------hh
Q 014917 250 ETTTVSTEALKETLEQ--IQLCSKLEDLFLKKKS-LRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRIL-------EN 319 (416)
Q Consensus 250 ~~~~~~~ea~kealaq--irlCS~lE~llLkkks-l~~GdSpe~ha~kVdKLKvlsESLanStskAEkRI~-------d~ 319 (416)
.+-..++..+++.+.+ .++|-..+..++-+.. +-. -.+.+.-.|+.--..++.-...+|+.|. ++
T Consensus 141 k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q-----~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t 215 (629)
T KOG0963|consen 141 KTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQ-----EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDT 215 (629)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344678889999988 8899888743332222 111 1233333444444444444445555544 44
Q ss_pred HhhhHHHhhh----hhhhhhhhHHHHHHHH---HHHHHHHHhHHHHHHHHHHHhhhHHHH------------------HH
Q 014917 320 RSQKEEALHF----RLAKCNEVCQLEKDLT---VEIQELEKQKDELEIALKKVNTSLVTT------------------RA 374 (416)
Q Consensus 320 R~QKEeAl~f----Rv~K~~Ev~~~EKel~---~EI~~LekqkdeLEAeLkkVn~sL~aA------------------~a 374 (416)
..|..+.-+. =..|..||+-+=.+|. .=|-.||++...|.-||+++|.+...+ .+
T Consensus 216 ~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~ 295 (629)
T KOG0963|consen 216 QNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIA 295 (629)
T ss_pred hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHH
Confidence 4444443333 3357788887777764 357789999999999999999887766 12
Q ss_pred HHH--------hhHHHHHhHHHHHHHHHHHHhhhhhhhh
Q 014917 375 RLR--------NAKEEREQFDEANNKILVYFKSKMSCQD 405 (416)
Q Consensus 375 Rl~--------~~rEERdqFdEAnnqIi~~Lk~K~s~~d 405 (416)
+|. -.++||+-.-..-++....|++|-+++.
T Consensus 296 ~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~le 334 (629)
T KOG0963|consen 296 QLSNDIERLEASLVEEREKHKAQISALEKELKAKISELE 334 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3567777777777777777777776654
No 61
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.46 E-value=1.4e+02 Score=32.49 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=36.6
Q ss_pred HhhhhhHHHHHHhhh--HhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 305 LVNSTSKAEKRILEN--RSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 305 LanStskAEkRI~d~--R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
|..-.++-++...|| .+|+|..+..|+. +-|.....++..|+..|..++.+|...|..+...|
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~--~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQ--QAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444 2345666666664 34555666777777777777777776666666555
No 62
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=49.73 E-value=3.1e+02 Score=32.43 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=64.7
Q ss_pred hhhcccCCCCcchhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhh-hhhhhhh------hhHHHHHHHHHHHHH
Q 014917 278 KKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALH-FRLAKCN------EVCQLEKDLTVEIQE 350 (416)
Q Consensus 278 kkksl~~GdSpe~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~-fRv~K~~------Ev~~~EKel~~EI~~ 350 (416)
|-|...-||-....-.-|.-++---+.|-.+.+-|..+|.+.|.=-+.+-. .---|.. |..-.-+-+..-..+
T Consensus 276 k~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~e 355 (1265)
T KOG0976|consen 276 KAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNE 355 (1265)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 444455566666555556666666677778888888888766543332211 0000110 111111223444677
Q ss_pred HHHhHHHHHHHHHHHhhhHHHH---HHHHHhhHHHH-HhHHHHHHHHH
Q 014917 351 LEKQKDELEIALKKVNTSLVTT---RARLRNAKEER-EQFDEANNKIL 394 (416)
Q Consensus 351 LekqkdeLEAeLkkVn~sL~aA---~aRl~~~rEER-dqFdEAnnqIi 394 (416)
|||++|.++.-..++.-.+..- -.+|....+|| +|.|+--|.|.
T Consensus 356 LEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if 403 (1265)
T KOG0976|consen 356 LEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF 403 (1265)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888887665554444333 23455555566 57787777764
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.55 E-value=2.4e+02 Score=26.89 Aligned_cols=96 Identities=18% Similarity=0.284 Sum_probs=49.0
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
..+|.+.-............-++|.+--.||.+-+ +-=+.+..|+..|+.+.+.|+..+...+..+..-
T Consensus 21 ~~~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~-----------~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 21 ATLDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELL-----------AEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444444555555555555554444322 1122344555566666666666666666555555
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHhh
Q 014917 373 RARLRNAKEEREQFDEANNKILVYFKS 399 (416)
Q Consensus 373 ~aRl~~~rEERdqFdEAnnqIi~~Lk~ 399 (416)
..++.+..+-+.+-.----+++..|+.
T Consensus 90 ~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 90 EQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444444444444443
No 64
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.01 E-value=2.6e+02 Score=33.28 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=42.1
Q ss_pred HHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCcchhhHhhhhHHHHHHH
Q 014917 225 GLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSES 304 (416)
Q Consensus 225 ~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaqirlCS~lE~llLkkksl~~GdSpe~ha~kVdKLKvlsES 304 (416)
+++++|++.+.... ++..+.++.+.+++.-+ .+.++.+.-.+.
T Consensus 27 ~iq~~l~~~~~~~~-----------~~~k~~~~~l~~tl~~l--------------------------~~~~~~~~~~~~ 69 (1109)
T PRK10929 27 QITQELEQAKAAKT-----------PAQAEIVEALQSALNWL--------------------------EERKGSLERAKQ 69 (1109)
T ss_pred HHHHHHHHhhcCCC-----------hhhHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
Confidence 77888888654211 11234677777777632 466777777777
Q ss_pred HhhhhhHHHHHHhhhHhhhH
Q 014917 305 LVNSTSKAEKRILENRSQKE 324 (416)
Q Consensus 305 LanStskAEkRI~d~R~QKE 324 (416)
+......|.+.+.+.+.|.+
T Consensus 70 ~~~~i~~ap~~~~~~~~~l~ 89 (1109)
T PRK10929 70 YQQVIDNFPKLSAELRQQLN 89 (1109)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 88888888888887777655
No 65
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=48.89 E-value=2.5e+02 Score=31.74 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=8.4
Q ss_pred hhccCCChhHHHHHHHHHH
Q 014917 143 MILEAPDEEEVSLLLEIFG 161 (416)
Q Consensus 143 mileaP~eeEvsLLlEiFg 161 (416)
+++--||--=-|-|+-+.|
T Consensus 325 liItGpNg~GKSTlLK~i~ 343 (771)
T TIGR01069 325 LAITGPNTGGKTVTLKTLG 343 (771)
T ss_pred EEEECCCCCCchHHHHHHH
Confidence 3444455444444444444
No 66
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=48.38 E-value=54 Score=30.62 Aligned_cols=48 Identities=31% Similarity=0.428 Sum_probs=38.1
Q ss_pred HHHHHHHHHhHHHHHHHH-----------HHHhhhHHHHHHHHHhhHHHHHhHHHHHHH
Q 014917 345 TVEIQELEKQKDELEIAL-----------KKVNTSLVTTRARLRNAKEEREQFDEANNK 392 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeL-----------kkVn~sL~aA~aRl~~~rEERdqFdEAnnq 392 (416)
.++|..||+|.++||..+ .+|=.+|..++..|.++...|+.+.+.-..
T Consensus 4 ~~~l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~ 62 (174)
T PF07426_consen 4 MSALDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKR 62 (174)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 467899999999999998 234567888899999998888888765444
No 67
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.35 E-value=2.9e+02 Score=28.06 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=26.5
Q ss_pred HHHHHH-hhhcCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHH
Q 014917 156 LLEIFG-LCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQ 201 (416)
Q Consensus 156 LlEiFg-lCL~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq 201 (416)
++|++- -| +|+.+-|-.+ =..|..+..++.+--+.|.+
T Consensus 64 ~LElY~~sC----~EL~~~I~eg----r~~~~~~E~et~~~nPpLF~ 102 (312)
T smart00787 64 LLELYQFSC----KELKKYISEG----RDLFKEIEEETLINNPPLFK 102 (312)
T ss_pred HHHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHhhcCcHHHH
Confidence 688888 55 6666666555 44788888888876655654
No 68
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=47.69 E-value=15 Score=30.76 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=39.3
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 014917 323 KEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRAR 375 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aR 375 (416)
|+=...||+-...||..--..|..++..|.++.++|..++...+..|.....+
T Consensus 9 ~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 9 KEFKKSMRGYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp ----EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred CccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 34445678888999999999999999999999999999999999988887544
No 69
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.49 E-value=1.8e+02 Score=24.52 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 311 KAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
.|-+||...-...|.++.-|..+.+.. -++..||+.|...+..|..+|.+...
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~a 60 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEA 60 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 344444444445555666565555544 34445566666666666666655433
No 70
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=46.30 E-value=1.4e+02 Score=28.20 Aligned_cols=109 Identities=23% Similarity=0.248 Sum_probs=65.8
Q ss_pred hhhhcccCCCCcchhh--------HhhhhHHHHHH-HHhhhhhHHH----HHHhhh---HhhhHHHhhhhhhhhhhhHHH
Q 014917 277 LKKKSLRNGDSPEQHG--------VKVHKLKIFSE-SLVNSTSKAE----KRILEN---RSQKEEALHFRLAKCNEVCQL 340 (416)
Q Consensus 277 Lkkksl~~GdSpe~ha--------~kVdKLKvlsE-SLanStskAE----kRI~d~---R~QKEeAl~fRv~K~~Ev~~~ 340 (416)
+-.+-+.||-+|+.|- +-=|||+.+-+ |-.-++.|-= ..-+-. .+|.+ =...||....+--..
T Consensus 18 INee~~~n~~GpeFYl~~~S~sW~eVEdkLraIl~d~~Vp~~~K~ACaWsaLALgVR~A~RQ~q-~q~~rV~~Lqd~~~~ 96 (152)
T PF15186_consen 18 INEEMLRNGGGPEFYLENRSLSWEEVEDKLRAILEDSQVPREAKRACAWSALALGVRFAARQRQ-LQARRVQWLQDQAEE 96 (152)
T ss_pred HHHHHHhcCCCchHHHHhccCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3455678999999983 33578887532 2222221100 000111 22322 245666666554332
Q ss_pred -HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhH
Q 014917 341 -EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQF 386 (416)
Q Consensus 341 -EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 386 (416)
+-.--+=.++|.+-+++-|-|-|++-.+|-.+++.|..+..|||..
T Consensus 97 hksa~~aLas~L~~Lr~q~e~e~keaa~qL~~~~a~L~~v~~ERD~L 143 (152)
T PF15186_consen 97 HKSAAWALASELKRLREQREMERKEAAFQLQLTQAALQEVQKERDLL 143 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222334556667777888899999999999999999999999964
No 71
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=45.89 E-value=3.4e+02 Score=28.01 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=5.1
Q ss_pred HhHHHHHHHHH
Q 014917 384 EQFDEANNKIL 394 (416)
Q Consensus 384 dqFdEAnnqIi 394 (416)
++++++..++-
T Consensus 291 ~~l~~~~~~l~ 301 (457)
T TIGR01000 291 QEITDLNQKLL 301 (457)
T ss_pred HHHHHHHHHHH
Confidence 34555544443
No 72
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=44.32 E-value=2.2e+02 Score=28.86 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=50.0
Q ss_pred chhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH------hHHHHHHHH
Q 014917 289 EQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEK------QKDELEIAL 362 (416)
Q Consensus 289 e~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~Lek------qkdeLEAeL 362 (416)
..|++..|.-+. --.++-+.|..+...|.+|.. |..+|..|++ +...||.||
T Consensus 117 ~~~a~~~d~yR~----~LK~IR~~E~sl~p~R~~r~~------------------l~d~I~kLk~k~P~s~kl~~LeqEL 174 (271)
T PF13805_consen 117 DQYADRLDQYRI----HLKSIRNREESLQPSRDRRRK------------------LQDEIAKLKYKDPQSPKLVVLEQEL 174 (271)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH-TTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHhHH------------------HHHHHHHHHhcCCCChHHHHHHHHH
Confidence 345566665555 445667777777776666542 2334444432 446788888
Q ss_pred HHHhhhHHHHHHHHHhhHHHHHhHHHHHHH
Q 014917 363 KKVNTSLVTTRARLRNAKEEREQFDEANNK 392 (416)
Q Consensus 363 kkVn~sL~aA~aRl~~~rEERdqFdEAnnq 392 (416)
.+.......|.|.|.|.+ |..|-||-+-
T Consensus 175 vraEae~lvaEAqL~n~k--R~~lKEa~~~ 202 (271)
T PF13805_consen 175 VRAEAENLVAEAQLSNIK--RQKLKEAYSL 202 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhh--HHHHHHHHHH
Confidence 888888888888888876 4455555543
No 73
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.15 E-value=1.7e+02 Score=29.64 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHH---HHHHhhhhhhh
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKI---LVYFKSKMSCQ 404 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqI---i~~Lk~K~s~~ 404 (416)
++..-++++.+.+.+|-.+|......+++-+-||+..+-|..|.+|-.... +..|+++-+++
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 344445566666777777777777777777777777777777776655443 34566665554
No 74
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=43.98 E-value=5.6e+02 Score=29.53 Aligned_cols=177 Identities=25% Similarity=0.304 Sum_probs=89.5
Q ss_pred HHHhhhhccccCCcchhchHHHHHHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHHHHHhhh-----hhhhh
Q 014917 202 YAQGAIAGLKINADLPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSK-----LEDLF 276 (416)
Q Consensus 202 ~aQ~AIsGLK~nAdi~RiD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaqirlCS~-----lE~ll 276 (416)
.|+-||+|.- .-++|+..|++.|+...... ..-.+..+| .=.|||+.|-|+|.-.- +-+.+
T Consensus 11 vaeeav~gwe------kae~e~~~lk~~l~~~~~~~---~~~e~r~~h-----ld~aLkec~~qlr~~ree~eq~i~~~~ 76 (769)
T PF05911_consen 11 VAEEAVSGWE------KAEAEAASLKQQLEAATQQK---LALEDRVSH-----LDGALKECMRQLRQVREEQEQKIHEAV 76 (769)
T ss_pred HHHHHHhhHH------HHHHHHHHHHHHHHHHHHHh---HHHHHHhhh-----hhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4889999974 45899999999999865322 112222332 23599999999998653 22333
Q ss_pred hhhhcccCCCCcchhhHhhhhHH-HHHHHHhhh-----hhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 014917 277 LKKKSLRNGDSPEQHGVKVHKLK-IFSESLVNS-----TSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQE 350 (416)
Q Consensus 277 Lkkksl~~GdSpe~ha~kVdKLK-vlsESLanS-----tskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~ 350 (416)
.+|. ...+|.+ .|-.-|+.. .++||.--+.+-.|-.+-+...+.+ -=-..-+||..
T Consensus 77 ~~~s------------~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~------~~~~~e~~~~~ 138 (769)
T PF05911_consen 77 AKKS------------KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSE------EKSQAEAEIED 138 (769)
T ss_pred HHHh------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHH
Confidence 3331 2333444 222222221 1222322222222222222222222 22222334444
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH----hHHHHHHHHHHHHhh----hhhhhhHHHHH
Q 014917 351 LEKQKDELEIALKKVNTSLVTTRARLRNAKEERE----QFDEANNKILVYFKS----KMSCQDRLLLV 410 (416)
Q Consensus 351 LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERd----qFdEAnnqIi~~Lk~----K~s~~dr~~~~ 410 (416)
|..+.+-.|-|-.-+--.+-.-.--|.+-.+||+ .-|-|+.|=+...|. -..||-=|.||
T Consensus 139 l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 139 LMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333333333334445566778875 457788888777763 23466555555
No 75
>PRK04863 mukB cell division protein MukB; Provisional
Probab=43.96 E-value=6.6e+02 Score=31.00 Aligned_cols=20 Identities=5% Similarity=-0.135 Sum_probs=9.1
Q ss_pred HHHHhhhHhhhHHHhhhhhh
Q 014917 313 EKRILENRSQKEEALHFRLA 332 (416)
Q Consensus 313 EkRI~d~R~QKEeAl~fRv~ 332 (416)
+.++-.-..|++.|..|+.-
T Consensus 320 e~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 320 NEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544433
No 76
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.63 E-value=3.5e+02 Score=30.69 Aligned_cols=111 Identities=19% Similarity=0.094 Sum_probs=84.5
Q ss_pred hhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhh---hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 014917 290 QHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRL---AKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 290 ~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv---~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn 366 (416)
++..|||.....-.-|-++++.+|+.+.+-.++--+...|=. ..+.-+-+.+..|.--+.+|.+|+++=-+|++.|-
T Consensus 51 ~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 51 IYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888999999999999999888777766655 56666777777888888899999988888877743
Q ss_pred -----------------------------hhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhh
Q 014917 367 -----------------------------TSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400 (416)
Q Consensus 367 -----------------------------~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K 400 (416)
.+|+.=+.+|...++|+..=-+-.+.++..++.=
T Consensus 131 ~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l 193 (660)
T KOG4302|consen 131 HQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSL 193 (660)
T ss_pred HHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888888888766555555555555543
No 77
>PRK04863 mukB cell division protein MukB; Provisional
Probab=42.54 E-value=5.7e+02 Score=31.47 Aligned_cols=13 Identities=8% Similarity=0.327 Sum_probs=6.0
Q ss_pred hHHHHHHHHhhhh
Q 014917 196 REELLQYAQGAIA 208 (416)
Q Consensus 196 ReELLq~aQ~AIs 208 (416)
|+.+.+.-.++|.
T Consensus 194 R~kF~kLf~taiy 206 (1486)
T PRK04863 194 RSKFYRLIEASLY 206 (1486)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 78
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.03 E-value=1.2e+02 Score=23.23 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 334 CNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 334 ~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
......--.++..+|..++++.++|+.+++++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445567778888888888888888888
No 79
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.92 E-value=1e+02 Score=25.61 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
+-+..-|..|+++.+.|+.++++++..++.....+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555554444433
No 80
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.36 E-value=4e+02 Score=27.09 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhh
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMS 402 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s 402 (416)
.++..++.|..++++.++.++.+.......+..++-.+++...-+..=|.-||.+..
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 334444444444444444444443333333333333333322222223444554443
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.11 E-value=2.3e+02 Score=27.19 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN 378 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~ 378 (416)
+.-.++...+..++++..+|+.+.++++..|..++..+..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555666655555555555554443
No 82
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.08 E-value=2.5e+02 Score=24.70 Aligned_cols=19 Identities=32% Similarity=0.272 Sum_probs=8.0
Q ss_pred HhhhhhhhhhhhHHHHHHH
Q 014917 326 ALHFRLAKCNEVCQLEKDL 344 (416)
Q Consensus 326 Al~fRv~K~~Ev~~~EKel 344 (416)
++.+|..+-.+...+++.+
T Consensus 108 ~l~~R~~~~~~~~~~~~~l 126 (218)
T cd07596 108 TLDDRADALLTLQSLKKDL 126 (218)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 83
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.07 E-value=2.1e+02 Score=28.73 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHH
Q 014917 333 KCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKIL 394 (416)
Q Consensus 333 K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi 394 (416)
+..++...-.++..+.....+++..|+.+.+.+...|..|..=+.....|+..+.+..+++-
T Consensus 243 ~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 243 ELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 44555666666777778888888888888888888998888888888888876665544443
No 84
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=41.07 E-value=49 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014917 351 LEKQKDELEIALKKVNTSLVTTRARLRN 378 (416)
Q Consensus 351 LekqkdeLEAeLkkVn~sL~aA~aRl~~ 378 (416)
+|.|...||.+|...+..+.+|..|++.
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777666654
No 85
>PRK12704 phosphodiesterase; Provisional
Probab=40.05 E-value=4.7e+02 Score=28.35 Aligned_cols=43 Identities=33% Similarity=0.366 Sum_probs=20.6
Q ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 014917 321 SQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 321 ~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn 366 (416)
.|||+.|.- |.+.+...|++|...-..|++++++|+..-+++.
T Consensus 92 ~~Ree~Le~---r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~ 134 (520)
T PRK12704 92 LQKEENLDR---KLELLEKREEELEKKEKELEQKQQELEKKEEELE 134 (520)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 3444555555555544445544444444444333
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=39.80 E-value=81 Score=34.01 Aligned_cols=57 Identities=19% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 014917 350 ELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDR 406 (416)
Q Consensus 350 ~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr 406 (416)
.|..|+-++++.|.+.|..|++-..+-....++++.-..+...|..|+..||-++.|
T Consensus 3 ~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~ 59 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNR 59 (459)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666666666654
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.70 E-value=4.8e+02 Score=28.10 Aligned_cols=60 Identities=27% Similarity=0.259 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH-HhHHHHHHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER-EQFDEANNKILV 395 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER-dqFdEAnnqIi~ 395 (416)
.+..--|++..||..++.|.-+.++.|++++..+.....++...+.++ .|++--.-++-.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A 123 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAA 123 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667788899999999999999999999988888888766544 666655554443
No 88
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=39.68 E-value=86 Score=25.97 Aligned_cols=42 Identities=31% Similarity=0.448 Sum_probs=23.0
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 324 EEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 324 EeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
++|..|=-.|-++++..-..+..++..+..+...+++.+.++
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555444
No 89
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.65 E-value=3.1e+02 Score=25.33 Aligned_cols=44 Identities=30% Similarity=0.414 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHh
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQ 385 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdq 385 (416)
+.+..||.++++--+.|-+|+--+|+.++.+..++..+++|-++
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888888889999999999999999999999888543
No 90
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.56 E-value=99 Score=27.71 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=6.6
Q ss_pred HHHHHhHHHHHHHHH
Q 014917 380 KEEREQFDEANNKIL 394 (416)
Q Consensus 380 rEERdqFdEAnnqIi 394 (416)
-+|+...+.......
T Consensus 144 ~ee~~~~~~~~~~~~ 158 (169)
T PF07106_consen 144 PEEKEKLEKEYKKWR 158 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445544444444333
No 91
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.34 E-value=2.3e+02 Score=31.00 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=8.2
Q ss_pred hhchHHHHHHHhhhhh
Q 014917 217 PRIDAEARGLIGKLDK 232 (416)
Q Consensus 217 ~RiD~Ea~~L~~kl~~ 232 (416)
.++|.=+..|.+.|+-
T Consensus 133 ~~~~~~~~~l~~~L~V 148 (754)
T TIGR01005 133 PADERVLKKMREKLNV 148 (754)
T ss_pred chHHHHHHHHHhcceE
Confidence 3445445556555543
No 92
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.01 E-value=2.8e+02 Score=27.90 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 298 LKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 298 LKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
|...---|......+|+-+-..-.++++|-.-| ..+..-|+++..+-.+...++++-+++|.++...|.+|..-+.
T Consensus 24 L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~----~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~A~~al~ 99 (344)
T PF12777_consen 24 LEEKQPELEEKQKEAEELLEEIEKEQEEAEKKK----AIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEEAQEALK 99 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666677765544434444443222 2355566666666677788889999999999999999988887
Q ss_pred hhH
Q 014917 378 NAK 380 (416)
Q Consensus 378 ~~r 380 (416)
+..
T Consensus 100 ~l~ 102 (344)
T PF12777_consen 100 SLD 102 (344)
T ss_dssp CS-
T ss_pred hCC
Confidence 654
No 93
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=38.76 E-value=3e+02 Score=27.63 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=46.5
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 323 KEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
-|.+..|=++|+=-...---.+..|+..|+..+.+||-..+....++.++.-|-.
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~ 223 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSE 223 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4778899999987777666678899999999999999999999999888866543
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.54 E-value=7.5e+02 Score=29.44 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=13.2
Q ss_pred HHHHHhHHHHHHHHHHHHhhh
Q 014917 380 KEEREQFDEANNKILVYFKSK 400 (416)
Q Consensus 380 rEERdqFdEAnnqIi~~Lk~K 400 (416)
+..-++|...|.+|-.++...
T Consensus 947 ~~~~~~~~~~~~~i~~y~~~~ 967 (1311)
T TIGR00606 947 KEKVKNIHGYMKDIENKIQDG 967 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 333466777777777666544
No 95
>PRK03918 chromosome segregation protein; Provisional
Probab=38.40 E-value=5.8e+02 Score=28.10 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=9.2
Q ss_pred ccCCChhHHHHHHHHHHh
Q 014917 145 LEAPDEEEVSLLLEIFGL 162 (416)
Q Consensus 145 leaP~eeEvsLLlEiFgl 162 (416)
+..| .+=..+|-++||+
T Consensus 141 ~~~~-~~r~~~~~~~~~~ 157 (880)
T PRK03918 141 LESD-ESREKVVRQILGL 157 (880)
T ss_pred hcCc-HHHHHHHHHHhCC
Confidence 3455 3344566677764
No 96
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=38.20 E-value=97 Score=24.87 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHH
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRA 374 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~a 374 (416)
.+...|...+..+++..+.|+.+++.+...+.....
T Consensus 62 ~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 62 EAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 97
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=38.05 E-value=3e+02 Score=24.72 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=8.5
Q ss_pred HhhhhhhhhHHHHH
Q 014917 397 FKSKMSCQDRLLLV 410 (416)
Q Consensus 397 Lk~K~s~~dr~~~~ 410 (416)
++.-.++||=+|++
T Consensus 79 ~~~~q~EldDLL~l 92 (136)
T PF04871_consen 79 RKEAQSELDDLLVL 92 (136)
T ss_pred HHhhhhhHHHHHHH
Confidence 34556677776654
No 98
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.88 E-value=3.7e+02 Score=28.30 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAK 380 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~r 380 (416)
++.+.-.-+..++.++..++.+|+.++++++..|..++.+|....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555566667777777777777777777777766666655443
No 99
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=37.86 E-value=8e+02 Score=29.61 Aligned_cols=40 Identities=5% Similarity=0.050 Sum_probs=19.4
Q ss_pred HhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 365 VNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 365 Vn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
.-..+..++.++...+.+.+.....-.+....++.-..|+
T Consensus 352 ~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el 391 (1353)
T TIGR02680 352 ARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQL 391 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555555555544444343
No 100
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.74 E-value=1.7e+02 Score=26.24 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTR 373 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~ 373 (416)
+|..|+..|++....|+++|+.++..+....
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3444555555555555555555555554443
No 101
>PF13514 AAA_27: AAA domain
Probab=37.51 E-value=6e+02 Score=29.57 Aligned_cols=51 Identities=29% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 313 EKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 313 EkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
+.+|.+-..+.++...-+.....++..++.. ..+..+..++.+++++|...
T Consensus 902 ~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~--~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 902 EEELEELEEELEELQEERAELEQELEALEGD--DDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444332 23444555555555555443
No 102
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=1.5e+02 Score=27.41 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=39.8
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 323 KEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
.++|+.|=-.|-+++......+..+|..|..+..++++++.++-..-.++
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777788888888999999999999999999988876654443
No 103
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=36.73 E-value=1.5e+02 Score=23.70 Aligned_cols=28 Identities=43% Similarity=0.494 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
.+..+|..|+++...++.++++....|.
T Consensus 73 ~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 73 KLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544443
No 104
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=36.38 E-value=1.2e+02 Score=30.21 Aligned_cols=69 Identities=26% Similarity=0.312 Sum_probs=43.7
Q ss_pred hhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhh------h----HHHHHHH---HHHHHHHHHhHHH
Q 014917 291 HGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNE------V----CQLEKDL---TVEIQELEKQKDE 357 (416)
Q Consensus 291 ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~E------v----~~~EKel---~~EI~~Lekqkde 357 (416)
..+++..|.-==..|.+++..-|++|.+...|.+.=-...-..... . ..++..| ..||.+||.++.+
T Consensus 178 a~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~ 257 (259)
T PF08657_consen 178 AREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRE 257 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777777777899999999999999988876543333332210 0 1222222 2467777777776
Q ss_pred HH
Q 014917 358 LE 359 (416)
Q Consensus 358 LE 359 (416)
||
T Consensus 258 Lq 259 (259)
T PF08657_consen 258 LQ 259 (259)
T ss_pred cC
Confidence 64
No 105
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.94 E-value=2.4e+02 Score=23.04 Aligned_cols=49 Identities=29% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILV 395 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~ 395 (416)
|+..|+.+.|+|-..-.++..-=..-+.+....+.||+++-+=|.+-..
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQ 49 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888776544444433334456777888999998887765433
No 106
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.86 E-value=4.2e+02 Score=25.74 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=21.4
Q ss_pred HHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014917 313 EKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKK 364 (416)
Q Consensus 313 EkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkk 364 (416)
+++|.+++.++..+..--+.. +.....+++..+|..|+.+.+++++++.+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 160 (301)
T PF14362_consen 111 DQKLDEIRQEKQDAIQAQVQA--SFDAQIARLDAEIAALQAEIDQLEKEIDR 160 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333322222 33334444444444555554444444444
No 107
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.78 E-value=2e+02 Score=25.82 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=29.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHH
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqI 393 (416)
..+.+|-+|||+|++.+..++.+-++..-|+. |=..+.+++--++
T Consensus 30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~---eLqaki~ea~~~l 74 (107)
T PF09304_consen 30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIA---ELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 45778899999999888887777666655543 3334445544443
No 108
>PRK10203 hypothetical protein; Provisional
Probab=35.74 E-value=2.4e+02 Score=25.49 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=51.9
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHH---HHHHhhhHHHHHHHHHhhHHHHHhH-HHHHHHHHHHH
Q 014917 326 ALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIA---LKKVNTSLVTTRARLRNAKEEREQF-DEANNKILVYF 397 (416)
Q Consensus 326 Al~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAe---LkkVn~sL~aA~aRl~~~rEERdqF-dEAnnqIi~~L 397 (416)
...||+-|.+-+---|-++..||..|..-.+.++.+ -.++...|+.-..|+..+.+-|+-| .+=.++|...|
T Consensus 44 r~~~rilknag~lP~el~LrKE~~~l~~~l~~~~d~~~~~~~~~k~L~~l~lr~~~~~~~~~~~~~~Y~~ki~~kl 119 (122)
T PRK10203 44 RAGYRLLKNAGCLPPELEQRREAIQLLDLLKGIREDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLNKI 119 (122)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 345667777767667778888888888777777632 2367788888899999999999888 44555665554
No 109
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=35.19 E-value=4.2e+02 Score=28.74 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=54.1
Q ss_pred hHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhh-hhh------hhhhhHHHHHHH-----------HHHHHHHHH
Q 014917 292 GVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHF-RLA------KCNEVCQLEKDL-----------TVEIQELEK 353 (416)
Q Consensus 292 a~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~f-Rv~------K~~Ev~~~EKel-----------~~EI~~Lek 353 (416)
.-+-.|..+|+.+|-..+.-.=+--.|-++||.++-.- |.. =..|..+-|.-+ ..|-..|.|
T Consensus 277 ~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrk 356 (442)
T PF06637_consen 277 KIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRK 356 (442)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888888888777777777889999887543 111 111222222222 345678999
Q ss_pred hHHHHHHHHHHHhhhHHHHHH
Q 014917 354 QKDELEIALKKVNTSLVTTRA 374 (416)
Q Consensus 354 qkdeLEAeLkkVn~sL~aA~a 374 (416)
.||.|+.||..-...+.+...
T Consensus 357 erd~L~keLeekkreleql~~ 377 (442)
T PF06637_consen 357 ERDSLAKELEEKKRELEQLKM 377 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877766665543
No 110
>PRK01156 chromosome segregation protein; Provisional
Probab=34.95 E-value=6.9e+02 Score=27.96 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=17.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 014917 329 FRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTS 368 (416)
Q Consensus 329 fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~s 368 (416)
+-..+-+++...-+.+..++..|..+..+|+.+++.....
T Consensus 671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~ 710 (895)
T PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTR 710 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333334444444444444444444444444444444443
No 111
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.28 E-value=6.3e+02 Score=32.20 Aligned_cols=67 Identities=28% Similarity=0.351 Sum_probs=53.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHh
Q 014917 332 AKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFK 398 (416)
Q Consensus 332 ~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk 398 (416)
++...+.+-.+.....|..+..++.+|+.+|++....|.....++.+-..+..||-.--.+.-.+++
T Consensus 1041 k~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~ 1107 (1930)
T KOG0161|consen 1041 KAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIK 1107 (1930)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555778888999999999999999999999999999999888888888766666555444
No 112
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=34.11 E-value=1.4e+02 Score=26.44 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=36.4
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhh-----hhhhhhHHHHHHHHHHHHHHHHh
Q 014917 293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRL-----AKCNEVCQLEKDLTVEIQELEKQ 354 (416)
Q Consensus 293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv-----~K~~Ev~~~EKel~~EI~~Lekq 354 (416)
.|..|||- +=..|++-|-+.|.|||+-++=-+ ........++++...+|..+.+.
T Consensus 28 ~r~~RLKq-------AK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik~~ 87 (113)
T TIGR01147 28 RKTKRLKQ-------AKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIKKA 87 (113)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45666665 456788889999999988776433 33344556666666666666543
No 113
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=33.82 E-value=4.7e+02 Score=26.70 Aligned_cols=53 Identities=30% Similarity=0.361 Sum_probs=29.5
Q ss_pred chhchHHHHHHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHHHHHhh
Q 014917 216 LPRIDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCS 270 (416)
Q Consensus 216 i~RiD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaqirlCS 270 (416)
+.||=.|+.+|+.++..++.....+. ..+.+.......++.+++.|..+++=+
T Consensus 96 l~RL~~Ev~EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l~l~~ 148 (388)
T PF04912_consen 96 LQRLRREVEELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSLKLEE 148 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHhhccc
Confidence 66777888888888877764332221 112221111234667777777775433
No 114
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=33.48 E-value=1.3e+02 Score=32.75 Aligned_cols=63 Identities=38% Similarity=0.448 Sum_probs=43.8
Q ss_pred hHHHHHHhhh-H---hhhHHHhhhhhhhhhhhHHHHHHHH---HHHHHHHHhHHH-------HHHHHHHHhhhHHHH
Q 014917 310 SKAEKRILEN-R---SQKEEALHFRLAKCNEVCQLEKDLT---VEIQELEKQKDE-------LEIALKKVNTSLVTT 372 (416)
Q Consensus 310 skAEkRI~d~-R---~QKEeAl~fRv~K~~Ev~~~EKel~---~EI~~Lekqkde-------LEAeLkkVn~sL~aA 372 (416)
+|||.||+-. | +-|+.|+-=|-+|-.-+.++|.-+. +|=++|.||..+ |-+||+|..+.+.+-
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~ 319 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQV 319 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhc
Confidence 6888888765 3 3578888889888888888887553 455555555555 557888877766543
No 115
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.19 E-value=5.9e+02 Score=28.82 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=24.6
Q ss_pred hhhHhhhHHHhhhhhhhhhhhHHHHHHHH----HHHHHHHHhHHHHHHHHHHHh
Q 014917 317 LENRSQKEEALHFRLAKCNEVCQLEKDLT----VEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 317 ~d~R~QKEeAl~fRv~K~~Ev~~~EKel~----~EI~~LekqkdeLEAeLkkVn 366 (416)
+.+-+|+-|-|.-|+....--.+.||.-. .=+.+..++|..||+||...-
T Consensus 462 L~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 462 LSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444433333211 112334556667777776554
No 116
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=32.89 E-value=3e+02 Score=30.72 Aligned_cols=77 Identities=25% Similarity=0.242 Sum_probs=59.8
Q ss_pred hHhhhhHHHHHH---HHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 014917 292 GVKVHKLKIFSE---SLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTS 368 (416)
Q Consensus 292 a~kVdKLKvlsE---SLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~s 368 (416)
.+|++-|-+.-| .|-|-..++.+.|..+|-+||+ ++.-..+....-.++++|..+||-+-.|+++.|..-..-
T Consensus 222 ~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee----l~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeE 297 (596)
T KOG4360|consen 222 QSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE----LDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEE 297 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666554 4667778889999999999997 566778888889999999999999999988877766555
Q ss_pred HHHH
Q 014917 369 LVTT 372 (416)
Q Consensus 369 L~aA 372 (416)
|+-+
T Consensus 298 Lk~l 301 (596)
T KOG4360|consen 298 LKCL 301 (596)
T ss_pred HHhh
Confidence 5544
No 117
>PRK12704 phosphodiesterase; Provisional
Probab=32.70 E-value=6.7e+02 Score=27.18 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHhhh
Q 014917 387 DEANNKILVYFKSK 400 (416)
Q Consensus 387 dEAnnqIi~~Lk~K 400 (416)
+||-.+++..++.+
T Consensus 153 ~ea~~~l~~~~~~~ 166 (520)
T PRK12704 153 EEAKEILLEKVEEE 166 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777666554
No 118
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.95 E-value=3.8e+02 Score=24.06 Aligned_cols=66 Identities=14% Similarity=0.264 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 014917 341 EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDR 406 (416)
Q Consensus 341 EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr 406 (416)
.+....++..++....++..++..+...+...+.+..+-+++-.+-.+..+++..+++.-.+..+|
T Consensus 125 ~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 125 LKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555554455555555555555555556666666666666555554
No 119
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.94 E-value=9.3e+02 Score=28.55 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=7.4
Q ss_pred HhhhHHHHHHHHHhhHHHH
Q 014917 365 VNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 365 Vn~sL~aA~aRl~~~rEER 383 (416)
++.+++++..++....+|+
T Consensus 683 ~~~~l~~l~~~l~~~~~e~ 701 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQEL 701 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333343333333333333
No 120
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=31.90 E-value=1.2e+02 Score=34.77 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHH----HHHHHhhHHHHHhHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTT----RARLRNAKEEREQFDEANNK 392 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA----~aRl~~~rEERdqFdEAnnq 392 (416)
.+.+|+..|+|+.+.|+.|++++...|+.- .|--.....||+...+...+
T Consensus 926 d~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~ 979 (995)
T PTZ00419 926 DLKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEE 979 (995)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999988663 34444555566555554443
No 121
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.51 E-value=81 Score=36.52 Aligned_cols=52 Identities=27% Similarity=0.441 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHH----HHHHHHHhhHHHHHhHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLV----TTRARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~----aA~aRl~~~rEERdqFdEAnnqI 393 (416)
-.+..|+..|+|+.+.|+.|+++++..|+ -+.|--....+||+...+...++
T Consensus 810 id~~~e~~rl~k~~~k~~~e~~~~~~kl~ne~f~~kAp~~vv~~e~~~~~~~~~~~ 865 (877)
T COG0525 810 IDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKL 865 (877)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHhhcchhhhhcCCHHHHHHHHHHHHhHHHHH
Confidence 47789999999999999999999999999 44555566677777665555443
No 122
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.41 E-value=9.4e+02 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=19.7
Q ss_pred CCCCCCceEEEecCCCCC-CCCcchhhhhhhhhhhhhhhhHh
Q 014917 103 DSPKKPTVVYFVDPDSGG-GEPMNFRDVFLFSQALEGITLSM 143 (416)
Q Consensus 103 ~sp~~~~~vly~D~d~gg-GePmnFrdVFL~SqALEgI~lSm 143 (416)
++|-.+. ||+|++-|+ .-|+++.+++-.=... ||..|=
T Consensus 101 d~~y~~e--~fi~~~~~~~~~~~~~~e~~r~~~~~-gv~~S~ 139 (1201)
T PF12128_consen 101 DAPYQRE--LFIDENNGDLVQALSMWELIRELRRK-GVQVSR 139 (1201)
T ss_pred cCccchh--hcccccCccccccccHHHHHHHHHhC-CCeeec
Confidence 3444444 788877632 2367777665433332 444443
No 123
>PRK09343 prefoldin subunit beta; Provisional
Probab=31.25 E-value=1.6e+02 Score=25.81 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=24.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLVTTRA 374 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~aA~a 374 (416)
..+|..|+++.+.|+.++++...+|..+..
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999888888888877654
No 124
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=30.98 E-value=4.7e+02 Score=24.86 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=28.7
Q ss_pred hhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHH-HHHhhhhhhhhhhhhcc
Q 014917 228 GKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQ-IQLCSKLEDLFLKKKSL 282 (416)
Q Consensus 228 ~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaq-irlCS~lE~llLkkksl 282 (416)
+++..++.+|..-.....+.. .+..+--+++..+-++ -+.|.|++-|-|..+.-
T Consensus 76 ~~~~~lD~sRY~l~~p~~~~~-~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g 130 (221)
T PF05700_consen 76 EPMQGLDMSRYELPPPPSGKS-NDVEAWKEALDNAYAQLEHQRLRLENLELLSKYG 130 (221)
T ss_pred CCCCccCHHhcCCCCCCCCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556555543332222111 1112334566666666 67888998877776653
No 125
>PRK12705 hypothetical protein; Provisional
Probab=30.98 E-value=7.4e+02 Score=27.13 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhh
Q 014917 387 DEANNKILVYFKS 399 (416)
Q Consensus 387 dEAnnqIi~~Lk~ 399 (416)
+||..+++..++.
T Consensus 141 ~eak~~l~~~~~~ 153 (508)
T PRK12705 141 EQARKLLLKLLDA 153 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 126
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.97 E-value=7.1e+02 Score=26.91 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=49.3
Q ss_pred hHhhhhHHHHHHHHhhhhhHHHHHHhhhH----hhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 292 GVKVHKLKIFSESLVNSTSKAEKRILENR----SQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 292 a~kVdKLKvlsESLanStskAEkRI~d~R----~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
.+.+|.|+--...|+......+.---+++ .|+++--+. ..+-.|=-.+++.+-+++++.+++..+|-+.=..+..
T Consensus 160 ~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl-~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~ 238 (420)
T COG4942 160 AERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKL-AQLLEERKKTLAQLNSELSADQKKLEELRANESRLKN 238 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566666655556555444443333333 222211111 1233566678889999999999999988655444444
Q ss_pred hHHHHHHHHHhhHHHHH
Q 014917 368 SLVTTRARLRNAKEERE 384 (416)
Q Consensus 368 sL~aA~aRl~~~rEERd 384 (416)
.+..+.+..-.+||.|+
T Consensus 239 ~Ias~e~~aA~~re~~a 255 (420)
T COG4942 239 EIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444333334444444
No 127
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.71 E-value=2.1e+02 Score=24.59 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH----hhHHHHHhHHHH
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVTTRARLR----NAKEEREQFDEA 389 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~----~~rEERdqFdEA 389 (416)
.|+..+..+.|.|..-|-.+..+-..-+++|+ -.|+.|.+|.+-
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555555555554455544 346666666543
No 128
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.44 E-value=1.7e+02 Score=24.84 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
+.++.+-+...|..|+++.+.|+..+++++..+++-..++
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666666666666555544
No 129
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.38 E-value=5.3e+02 Score=25.23 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKE 381 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rE 381 (416)
..+.+++..++.+.+.++++++..+.++..+...+..+++
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~ 179 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISE 179 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666666666555555444
No 130
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=30.36 E-value=2.7e+02 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=18.2
Q ss_pred HHHHHHH---hhhcCcHHHHHHHHHhHHHH
Q 014917 155 LLLEIFG---LCLAGGKEVHSAVMSSIQDL 181 (416)
Q Consensus 155 LLlEiFg---lCL~GGkevh~Ai~ssiqdL 181 (416)
|.+||+- |||.....+.+.|++++...
T Consensus 12 L~~Ei~~~~lL~lPlp~~~R~~i~~~~~~~ 41 (192)
T PF05529_consen 12 LYAEIAVLLLLVLPLPSPIRRKIFKFLDKS 41 (192)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3445443 78888877888888777653
No 131
>PF06920 Ded_cyto: Dedicator of cytokinesis; InterPro: IPR010703 This family represents a conserved region of approximately 200 residues within a number of eukaryotic dedicator of cytokinesis (DOCK) proteins. These proteins are potential guanine nucleotide exchange factors that activate some small GTPases, such as Rac, by exchanging bound GDP for free GTP []. DOCK proteins are required during several cellular processes, such as cell motility and phagocytosis. For instance, DOCK2 is specifically expressed in haemopoietic cells, and plays a critical role in lymphocyte migration [].; GO: 0005085 guanyl-nucleotide exchange factor activity, 0005525 GTP binding, 0051020 GTPase binding; PDB: 2WMO_A 2WM9_A 2WMN_A 3VHL_A 3B13_A 2YIN_B.
Probab=30.32 E-value=19 Score=32.76 Aligned_cols=54 Identities=30% Similarity=0.400 Sum_probs=31.2
Q ss_pred ecCCCCCCCCcchhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHH---HHhhhcCcHHHHHHHHHh
Q 014917 114 VDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEI---FGLCLAGGKEVHSAVMSS 177 (416)
Q Consensus 114 ~D~d~ggGePmnFrdVFL~SqALEgI~lSmileaP~eeEvsLLlEi---FglCL~GGkevh~Ai~ss 177 (416)
+|+-+. |+|+.+.++||-..-+ .+-+.+-+..|-++ |--|+.=|-.+|..+++.
T Consensus 100 v~a~Vn-gG~~~y~~~Fl~~~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~L~~h~~~~~~ 156 (178)
T PF06920_consen 100 VDAAVN-GGPSKYAEAFLSPEYL---------HPEDKELVEKLKEAFIDQLIVLERALELHKKLCSP 156 (178)
T ss_dssp HS-SSS--TTHHHHHHHSSCHHC---------SHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--G
T ss_pred cccccc-CchHHHHHHHcCcccc---------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 566665 9999999999987655 22233444444333 334446667777777775
No 132
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=30.28 E-value=4.5e+02 Score=27.36 Aligned_cols=63 Identities=27% Similarity=0.307 Sum_probs=40.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhh
Q 014917 333 KCNEVCQLEKDLTVEIQELEKQK-----DELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSK 400 (416)
Q Consensus 333 K~~Ev~~~EKel~~EI~~Lekqk-----deLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K 400 (416)
|..|....-.+=-.||.+|..|. |=.|.|--+|+++|+ ||.||-|=.|.-..-.-+...|.-|
T Consensus 76 kLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLA-----LKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 76 KLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLA-----LKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhchh
Confidence 33333333344456788777765 446777888887775 7778888888776665666666555
No 133
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.27 E-value=7.3e+02 Score=26.87 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 014917 386 FDEANNKILVYFKSKM 401 (416)
Q Consensus 386 FdEAnnqIi~~Lk~K~ 401 (416)
-+||-.+++..++.+.
T Consensus 146 ~~eak~~l~~~~~~~~ 161 (514)
T TIGR03319 146 QEEAKEILLEEVEEEA 161 (514)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567777777776543
No 134
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.81 E-value=2.3e+02 Score=31.00 Aligned_cols=15 Identities=0% Similarity=0.113 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhhhhH
Q 014917 392 KILVYFKSKMSCQDR 406 (416)
Q Consensus 392 qIi~~Lk~K~s~~dr 406 (416)
.++..|+.+...+.+
T Consensus 288 ~~i~~L~~~l~~l~~ 302 (754)
T TIGR01005 288 DLIQRLRERQAELRA 302 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555544443
No 135
>PRK14158 heat shock protein GrpE; Provisional
Probab=29.49 E-value=4.7e+02 Score=25.16 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
++..+|..|+++.++|..++.+..+-....+-|...-+++
T Consensus 44 ~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~ 83 (194)
T PRK14158 44 ELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666555544443
No 136
>PRK00106 hypothetical protein; Provisional
Probab=29.31 E-value=8.1e+02 Score=27.04 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 332 AKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 332 ~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
.|..++...|++|...-..|+.++.+|+...++++...
T Consensus 115 kRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 115 RKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444433
No 137
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=29.20 E-value=1.9e+02 Score=24.82 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 341 EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 341 EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
-..+...++.|+.++.+|++-++.++..++...+||
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~~ 117 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDAAEERCRERL 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888888888888888887777776665
No 138
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.15 E-value=89 Score=32.76 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=18.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
+|.+|++|.++|++++.+++..+++..++++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655555555543
No 139
>PRK14155 heat shock protein GrpE; Provisional
Probab=29.14 E-value=1.7e+02 Score=28.32 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 341 EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 341 EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
+.++..+|..|+++.++|..++.+..+-+...+-|...-+++-
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888999999998888888888888777776655554
No 140
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=29.10 E-value=1.7e+02 Score=28.91 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=35.2
Q ss_pred HHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH
Q 014917 312 AEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVT 371 (416)
Q Consensus 312 AEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~a 371 (416)
|=+|-.+.|.||+ +|+...=.+|..|-..|..+.++|..||.++...+..
T Consensus 205 A~~kSR~~~k~~~----------~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 205 AVRKSRDKRKQKE----------DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355666666666 4555555677778888888999999988888766554
No 141
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.09 E-value=1.1e+02 Score=25.21 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
||..-|.-|+....-|+|||+|-..+-.+|.+=+
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLF 62 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEALF 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 4556677788888888999999888877776643
No 142
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.73 E-value=3.6e+02 Score=22.74 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhh
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNA 379 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~ 379 (416)
..|.+.-+.|..+.|..++++.++..-=.....||..+
T Consensus 42 ~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 42 QRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666665555544444454433
No 143
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.41 E-value=1.2e+02 Score=30.54 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=66.5
Q ss_pred hHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH
Q 014917 292 GVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVT 371 (416)
Q Consensus 292 a~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~a 371 (416)
+.+|.+|=.=-+-+.++++--|.+ |-.|.++| -.|+.+.|.....+++.|+.|.++|+|.+++.+..|+.
T Consensus 37 ~~~Vr~lLqqy~~~~~~i~~le~~---~~~~l~~a-------k~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 37 ALKVRKLLQQYDIYRTAIDILEYS---NHKQLQQA-------KAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---ChHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455655555455566666544432 22233333 24778888889999999999999999999998877765
Q ss_pred HH------------------HHHH----hhHHHHHhHHHHHHHHHHHHhhhhhhhhHHH
Q 014917 372 TR------------------ARLR----NAKEEREQFDEANNKILVYFKSKMSCQDRLL 408 (416)
Q Consensus 372 A~------------------aRl~----~~rEERdqFdEAnnqIi~~Lk~K~s~~dr~~ 408 (416)
-. -.+. .-+.|.|.+.+--..++..|-.|.-..-+.+
T Consensus 107 L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 107 LSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 31 1111 2345666666666666666665554443333
No 144
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=28.41 E-value=47 Score=27.65 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVY 396 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~ 396 (416)
.+...||.. +-|+||.-.=|.-|.-++-=| +-+|+||+++||.|+..
T Consensus 16 ~e~IKdik~--~AK~ElGv~gk~Fnkl~~lyH------k~~Re~fE~e~ee~~el 62 (69)
T PF11126_consen 16 NEMIKDIKD--RAKDELGVDGKMFNKLLKLYH------KQEREEFEAENEEVVEL 62 (69)
T ss_pred HHHHHHHHH--HHHHHcCCCHHHHHHHHHHHH------HhhHHHHHHHHHHHHHH
Confidence 344444443 346777777788887776544 45899999999999874
No 145
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.08 E-value=2e+02 Score=23.83 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=18.2
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 014917 325 EALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALK 363 (416)
Q Consensus 325 eAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLk 363 (416)
+|..|=-.|-..+...-+++..+|..+.++.++++.++.
T Consensus 87 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 87 EAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443444444444444445555555555555555443
No 146
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.33 E-value=8.7e+02 Score=27.09 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=14.7
Q ss_pred hhHHHHHHHHhhhhhHHHHHHhhhHhhhHH
Q 014917 296 HKLKIFSESLVNSTSKAEKRILENRSQKEE 325 (416)
Q Consensus 296 dKLKvlsESLanStskAEkRI~d~R~QKEe 325 (416)
-.++.+.+.-+..-+++|.-|.-.+-+-.+
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~e 124 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKE 124 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444555555666555544444333
No 147
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=27.30 E-value=6.6e+02 Score=25.92 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=59.6
Q ss_pred hHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 297 KLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEV----CQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 297 KLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev----~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
+=+.|.+.+.+....+=..+......=+.|+.-|+.-+.++ .---+.+..||..+|+....|+..+.....-|.-|
T Consensus 219 ~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkva 298 (384)
T PF03148_consen 219 SSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVA 298 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33445555555555555555566666677888887766543 34456788999999999999999999999999888
Q ss_pred HHHHHh
Q 014917 373 RARLRN 378 (416)
Q Consensus 373 ~aRl~~ 378 (416)
+-||.+
T Consensus 299 qTRL~~ 304 (384)
T PF03148_consen 299 QTRLEN 304 (384)
T ss_pred HHHHhh
Confidence 888864
No 148
>PF13809 Tubulin_2: Tubulin like
Probab=27.30 E-value=1.2e+02 Score=30.38 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=38.1
Q ss_pred HHHHHHHhhhhccCCCCC-CCCCccccCC--CCCCCCCceEEEecCCCCCCCCcchhhhhhhhhhhhhhhhHh
Q 014917 74 RWLVALKEVERCSTSPDN-NYLELDDQLN--SDSPKKPTVVYFVDPDSGGGEPMNFRDVFLFSQALEGITLSM 143 (416)
Q Consensus 74 RWL~aLkeier~s~~~~~-~~~~~~q~~~--~~sp~~~~~vly~D~d~ggGePmnFrdVFL~SqALEgI~lSm 143 (416)
.=+.+|+|++.+...... .......... ...|.|++.+|.+|++.++|.++ +=+++..+.|.-.+
T Consensus 209 NayAAL~EL~~~~~~~~~~~~~~~~~~~~~~~~~~~PFd~~ylv~~~n~~~~~~-----~~~~~~~~~ia~~i 276 (345)
T PF13809_consen 209 NAYAALKELDYLMDGQNRPEAQYDLYDVDEVEKRPAPFDRCYLVGNKNGNGSTL-----NSQDDIYEMIADFI 276 (345)
T ss_pred HHHHHHHHHHHHhCCCccccccccccccccccCCCCCCCeEEEeccCCCCCCcc-----CCHHHHHHHHHHHH
Confidence 337899999998866521 1111111111 34455788999999999866664 23344445554443
No 149
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.07 E-value=3.8e+02 Score=25.62 Aligned_cols=63 Identities=27% Similarity=0.391 Sum_probs=28.7
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 294 KVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 294 kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
..+||+.... +.++. -+|-.|.|=+--|. .=.+.|.+.++|+..||..|+++.+.||.-..+.
T Consensus 84 At~KLr~iv~-~tsan-------cs~QVqqeL~~tf~-rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~ 146 (171)
T PF04799_consen 84 ATEKLRLIVS-FTSAN-------CSHQVQQELSSTFA-RLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKS 146 (171)
T ss_dssp ----------------------------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcc-------hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568887542 22221 22344555444443 2357899999999999999999998887655443
No 150
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.03 E-value=1.2e+02 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
.+..-+++.++|..|+.++..+.++++-++..+.
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888888777654
No 151
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=26.71 E-value=6.1e+02 Score=24.79 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=11.5
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 014917 348 IQELEKQKDELEIALKKVNTSLVTTRAR 375 (416)
Q Consensus 348 I~~LekqkdeLEAeLkkVn~sL~aA~aR 375 (416)
+..++.+...++++|......++.+...
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333
No 152
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.59 E-value=64 Score=35.01 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 346 VEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
.+|++|+||.++|++|++..+..+
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHHhhccccccc
Confidence 356666666666666666544443
No 153
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.25 E-value=4.8e+02 Score=23.41 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
.++..++..++.....+..+++.+...+.+.....++..+|
T Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e 145 (191)
T PF04156_consen 105 QELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKE 145 (191)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555554444444444
No 154
>PRK00106 hypothetical protein; Provisional
Probab=26.24 E-value=9.1e+02 Score=26.64 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEAN 390 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAn 390 (416)
++.+.|..|...-..|+++.++|+.+-++++..-..-..+.....+-..++++..
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555444444444444444444444433
No 155
>PRK14151 heat shock protein GrpE; Provisional
Probab=26.14 E-value=3.1e+02 Score=25.75 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
.++.++|..|+++.++|...+.+..+.....+-|..+-+++-
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKA 64 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888877777777766555543
No 156
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.08 E-value=5.1e+02 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHH
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVTTRA 374 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~aA~a 374 (416)
.+++.|..+.+.|..++.+++..|+.--.
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554433
No 157
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=26.02 E-value=3e+02 Score=25.29 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 340 LEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 340 ~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
-.|.+..+|..+.+=..+.+++|+++..++..-...|++.|.+
T Consensus 40 ~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~ 82 (126)
T PF07028_consen 40 SQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777765
No 158
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=25.94 E-value=2.7e+02 Score=25.03 Aligned_cols=45 Identities=29% Similarity=0.322 Sum_probs=30.2
Q ss_pred hhhHHHHHHhhhHhhhHHHhhhhhhhh-----hhhHHHHHHHHHHHHHHH
Q 014917 308 STSKAEKRILENRSQKEEALHFRLAKC-----NEVCQLEKDLTVEIQELE 352 (416)
Q Consensus 308 StskAEkRI~d~R~QKEeAl~fRv~K~-----~Ev~~~EKel~~EI~~Le 352 (416)
+=..|++-|-+.|.|+|....--..+. +-....|++.-..|++|.
T Consensus 36 AKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~ki~~lk 85 (108)
T KOG1772|consen 36 AKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDKIAGLK 85 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 556789999999999999887655554 233344555555555554
No 159
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.92 E-value=6.1e+02 Score=25.76 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
..+|..++++.|++.+++|+.+..+.....|+.
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544443
No 160
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.81 E-value=6.6e+02 Score=24.88 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHhhhHHHHHHH
Q 014917 353 KQKDELEIALKKVNTSLVTTRAR 375 (416)
Q Consensus 353 kqkdeLEAeLkkVn~sL~aA~aR 375 (416)
.+|+++++++++.+.+...|...
T Consensus 177 ~dr~~~~~ev~~~e~kve~a~~~ 199 (243)
T cd07666 177 ADRDLLKEEIEKLEDKVECANNA 199 (243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555444
No 161
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=25.59 E-value=1.6e+02 Score=33.36 Aligned_cols=51 Identities=29% Similarity=0.464 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHH----HHHHHhhHHHHHhHHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTT----RARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA----~aRl~~~rEERdqFdEAnnqI 393 (416)
.+.+|++.|+|+.+.|+.+++++...|+.. .|--.....||....+...+|
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~ 862 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKL 862 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 367888889999999999998888888763 333344555565555555444
No 162
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.51 E-value=4.3e+02 Score=29.31 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=12.1
Q ss_pred hhhhhhhhhh--hhhhHhhccCCCh
Q 014917 128 DVFLFSQALE--GITLSMILEAPDE 150 (416)
Q Consensus 128 dVFL~SqALE--gI~lSmileaP~e 150 (416)
+-|||+..-+ .|..-.|=.-|.+
T Consensus 87 q~fLYp~e~~~R~ll~fLiekLP~~ 111 (594)
T PF05667_consen 87 QTFLYPNEKDLRRLLMFLIEKLPRE 111 (594)
T ss_pred hhhccCChHHHHHHHHHHHHHCCcc
Confidence 4577776543 3444444455644
No 163
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.43 E-value=2e+02 Score=24.37 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=9.6
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHH
Q 014917 348 IQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 348 I~~LekqkdeLEAeLkkVn~sL~ 370 (416)
+..|+++.+.++..++.++.++.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~ 91 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEE 91 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 164
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=25.38 E-value=4.2e+02 Score=22.49 Aligned_cols=37 Identities=32% Similarity=0.361 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 333 KCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 333 K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
|...++..|+ -..|+..++++.+++++++..-+....
T Consensus 37 ~~~k~~~~ek-~~~e~~~~~~el~~~~~e~~~~e~~~~ 73 (125)
T PF14265_consen 37 KLAKMSAEEK-AQEELEELEKELEELEAELARRELRSE 73 (125)
T ss_pred HHHhcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554 338889999999999999887655433
No 165
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.30 E-value=3e+02 Score=22.38 Aligned_cols=36 Identities=39% Similarity=0.553 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
|-|.+.+.++|++.++|-..+.++...+.....|++
T Consensus 36 KKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455555555555555555555555555554443
No 166
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.19 E-value=2.8e+02 Score=31.58 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=56.7
Q ss_pred hHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhh
Q 014917 337 VCQLEKDL-TVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMS 402 (416)
Q Consensus 337 v~~~EKel-~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s 402 (416)
|+-+=-|| ..||+.|++|.-+.|.|=.-+...|-.++.-|..++.+=..|.+-.+....||++-..
T Consensus 255 v~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 255 VSDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred cchhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444454 5799999999999999999999999999999999999999999999998888887655
No 167
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=24.99 E-value=1.8e+02 Score=28.26 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=31.1
Q ss_pred hhhhhhhhhHHHHHH------HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 329 FRLAKCNEVCQLEKD------LTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 329 fRv~K~~Ev~~~EKe------l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
+||-|+.....+|.- =+..++.-|-+|-.||||-......++...+|+.
T Consensus 75 WRViKt~d~~~AE~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~ 129 (192)
T PF11180_consen 75 WRVIKTQDEARAEAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARAN 129 (192)
T ss_pred eEeeecCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776666643 2456666666777777766666666666655554
No 168
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.95 E-value=6.9e+02 Score=24.82 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
....-|+.|+.|..+++++|..+..
T Consensus 211 ~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 211 AQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555678888888888888776643
No 169
>PRK14139 heat shock protein GrpE; Provisional
Probab=24.73 E-value=2.9e+02 Score=26.31 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
+..+|..|+++.++|...+.+..+-....+-|...-+++-
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~ 76 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA 76 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888888888887777776655554
No 170
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=24.34 E-value=6.5e+02 Score=24.79 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=44.8
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
.+..++..|.+.+..-..+||.... .++|.+..+ +..++..|...|++|++++++...
T Consensus 120 ~~~~~i~~l~~~I~~ll~~aE~LGe----------------eG~VdeA~~-~~~~~e~Lk~ek~~le~~~~~~~~ 177 (254)
T PF03194_consen 120 EKAEKIDELDEKIGELLKEAEELGE----------------EGDVDEAQK-LMEEVEKLKEEKEELEKELEEYRN 177 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3588899988888888888877654 456777774 578999999999999997655544
No 171
>PLN02943 aminoacyl-tRNA ligase
Probab=24.09 E-value=1.5e+02 Score=34.04 Aligned_cols=51 Identities=24% Similarity=0.381 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHH----HHHHHhhHHHHHhHHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTT----RARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA----~aRl~~~rEERdqFdEAnnqI 393 (416)
.+.+|+..|+|+.+.|+.|+.+++..|+.. .|--....+||+.-.+...+|
T Consensus 886 D~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l 940 (958)
T PLN02943 886 DISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKI 940 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999888863 333344444554444444333
No 172
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=24.07 E-value=2.5e+02 Score=29.31 Aligned_cols=68 Identities=24% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHhhhHhhhHHHhhhhhhhhhhh--HHHHH---HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014917 311 KAEKRILENRSQKEEALHFRLAKCNEV--CQLEK---DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN 378 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv~K~~Ev--~~~EK---el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~ 378 (416)
+.++|-+....+.-.+-...++|.=-. ...+. ++.+++..|.++..+||++++.+...++..-.++=|
T Consensus 36 d~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
No 173
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.00 E-value=5.5e+02 Score=23.29 Aligned_cols=64 Identities=13% Similarity=0.270 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhh
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSC 403 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~ 403 (416)
.++.+=|+|+.-|+.|..+.|+..+--+.....++..+.-+.+.+.+=+.+. ++|.-|..|...
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~----~~V~~Le~ki~~ 121 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ----QMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4556667888888888888888888888888888888888888877766553 556666666543
No 174
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.95 E-value=7.7e+02 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
+...|..++.+...+.+++++....++..
T Consensus 137 l~~~i~~~~~~l~~~~~~~~~~~~l~~~~ 165 (421)
T TIGR03794 137 LEETIGRLREELAALSREVGKQRGLLSRG 165 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555444444444444
No 175
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=23.84 E-value=3e+02 Score=29.19 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=21.6
Q ss_pred hHHHHHHHHHH--hhhcCcHHHHHHHHHhHHHHHHhccc
Q 014917 151 EEVSLLLEIFG--LCLAGGKEVHSAVMSSIQDLATVFST 187 (416)
Q Consensus 151 eEvsLLlEiFg--lCL~GGkevh~Ai~ssiqdLA~aFs~ 187 (416)
-=+++|-..|. ----...++|.++-+.+..|......
T Consensus 23 lvla~L~~~F~~~~~~v~~~~l~~~L~~~L~~l~~~~~~ 61 (478)
T PF11855_consen 23 LVLAFLQRVFDPNRREVPEEELHERLDDDLEELREQGGE 61 (478)
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHhccCc
Confidence 44566666664 22223456777777777777665554
No 176
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.64 E-value=4e+02 Score=27.40 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn 366 (416)
..+..+.+..+|..|+++.++|++.|.+-.
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~ 269 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNP 269 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455566777777777777777777665444
No 177
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.60 E-value=3.6e+02 Score=22.00 Aligned_cols=77 Identities=10% Similarity=0.125 Sum_probs=55.3
Q ss_pred chhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHH-hhhcCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHH
Q 014917 125 NFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFG-LCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYA 203 (416)
Q Consensus 125 nFrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFg-lCL~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~a 203 (416)
.|++-|.+ .++.+.++- ++.+......++. || ..|.--.+.+..++.++-+.+..+.-.++-..+-+-+|.
T Consensus 32 ~~~~~vv~------~~i~~~le~-~~~~~~~~~~Ll~~L~-~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~ 103 (113)
T smart00544 32 EQHHEVVK------VLLTCALEE-KRTYREMYSVLLSRLC-QANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFV 103 (113)
T ss_pred cchHHHHH------HHHHHHHcC-CccHHHHHHHHHHHHH-HcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHH
Confidence 46555543 344455554 4566666666666 66 567788889999999988888888887888888888887
Q ss_pred Hhhhhc
Q 014917 204 QGAIAG 209 (416)
Q Consensus 204 Q~AIsG 209 (416)
..+|..
T Consensus 104 a~~v~~ 109 (113)
T smart00544 104 ARLISD 109 (113)
T ss_pred HHHHHc
Confidence 777653
No 178
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=23.59 E-value=6.4e+02 Score=25.45 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhh------hHHHHHHHHHh-hHHHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNT------SLVTTRARLRN-AKEEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~------sL~aA~aRl~~-~rEERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
..-+++..++..|+++|..++.+||.... .|-.+.+.+.. -.+|-..||--.++|-..+....+.+
T Consensus 195 ~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~~DDI~~~ll~~~~~~e~lF~~eL~kf~~~~~~v~~~~~~Q~~ll 267 (339)
T cd09238 195 GTLRSNLEELEALGNERAGIEDMMKALKRNDNILAKVMATTGSYDALFKEELKKYDSVREAVSKNISSQDDLL 267 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44577888999999999999999965322 22222222332 45566778877777776666555433
No 179
>PRK14158 heat shock protein GrpE; Provisional
Probab=23.42 E-value=1.6e+02 Score=28.27 Aligned_cols=59 Identities=29% Similarity=0.199 Sum_probs=43.3
Q ss_pred hhHHHhhhhhhhhhhhHHH------HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 014917 322 QKEEALHFRLAKCNEVCQL------EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAK 380 (416)
Q Consensus 322 QKEeAl~fRv~K~~Ev~~~------EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~r 380 (416)
|--+||+-...|.-+.-+. .-+...++..|+.+.++|+++++.....+-.+.|-+.|.|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 10 QIAEALKAKAAKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred hhHHHHHHhhcccccccCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665543322 2335667889999999999999999999988888888765
No 180
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.27 E-value=2.4e+02 Score=30.76 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=4.0
Q ss_pred cChHHHHHH
Q 014917 194 VKREELLQY 202 (416)
Q Consensus 194 vkReELLq~ 202 (416)
+||-.+|=.
T Consensus 8 ~~rkQ~~~~ 16 (475)
T PRK13729 8 VKRKQYLWL 16 (475)
T ss_pred HHHHHHHHH
Confidence 444444444
No 181
>PF12323 HTH_OrfB_IS605: Helix-turn-helix domain; InterPro: IPR021027 This entry represents an N-terminal helix-turn-helix domain found in a variety of putative transposases [, , ]. It is usually associated with PF01385 from PFAM and PF07282 from PFAM.
Probab=23.26 E-value=71 Score=23.03 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHhhhcCcHHHHHHHHHhH
Q 014917 148 PDEEEVSLLLEIFGLCLAGGKEVHSAVMSSI 178 (416)
Q Consensus 148 P~eeEvsLLlEiFglCL~GGkevh~Ai~ssi 178 (416)
|+++....|.+.||.| --|.|..+.-.
T Consensus 11 Pt~~Q~~~L~~~~~~~----R~vyN~~L~~~ 37 (46)
T PF12323_consen 11 PTKEQEEKLERWFGAC----RFVYNWALAER 37 (46)
T ss_pred cCHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 8999999999999998 44555554433
No 182
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=23.18 E-value=5.8e+02 Score=23.26 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.2
Q ss_pred HHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 014917 301 FSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQE 350 (416)
Q Consensus 301 lsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~ 350 (416)
+..-|.+=-.+...-|-+....+++|......=...+....++-..=|..
T Consensus 52 v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~ 101 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAA 101 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666677777888877777777777777776666665
No 183
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.03 E-value=1.2e+02 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 014917 341 EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAK 380 (416)
Q Consensus 341 EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~r 380 (416)
+.+...|+..|+.+.++|+++++.....+-.+.|-+.|.|
T Consensus 34 ~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 34 DQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 184
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.98 E-value=3.7e+02 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
.+..+|+.++.+..++++++......+
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~ 227 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQR 227 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444333
No 185
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=22.92 E-value=6.9e+02 Score=24.05 Aligned_cols=38 Identities=34% Similarity=0.401 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014917 341 EKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN 378 (416)
Q Consensus 341 EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~ 378 (416)
.+.....+.+||.-.++||..|-+|-..|-.+++-|=|
T Consensus 193 ~~~~~~~Le~LE~~Ie~lE~glE~vFR~LIktRVSLLN 230 (231)
T PF03087_consen 193 VQNAQKRLEELEECIEELEEGLECVFRRLIKTRVSLLN 230 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45567788999999999999999999999888876654
No 186
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.66 E-value=4.1e+02 Score=28.31 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHH
Q 014917 335 NEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYF 397 (416)
Q Consensus 335 ~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~L 397 (416)
+++...+.++..+|...=.+.+.|-.+|.++|.++..+.+-=..+-+=+||=|.+=+++=..+
T Consensus 160 ~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~~~~~g~~~ndLlDqRD~ll~~LS~~v 222 (507)
T PRK07739 160 QSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAKVEPNGYLPNDLYDQRDLLLDELSKIV 222 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHhhc
Confidence 445566666666666666677777777777777776654432333344444444444443333
No 187
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=22.62 E-value=73 Score=27.81 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHH
Q 014917 354 QKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVY 396 (416)
Q Consensus 354 qkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~ 396 (416)
-|.||.-.=|--|.-++--+ +.+|+||++.|+.|+..
T Consensus 48 AK~E~GvdGK~Fnkl~klYH------kq~R~~fEae~~Ev~el 84 (91)
T PHA02599 48 AKTELGVDGKMFNKLFKLYH------KQEREQFEAENDEVVEL 84 (91)
T ss_pred HHHHhCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34555555555665554333 56899999999999875
No 188
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=22.45 E-value=5.6e+02 Score=22.87 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhH
Q 014917 344 LTVEIQELEKQK 355 (416)
Q Consensus 344 l~~EI~~Lekqk 355 (416)
+..||..|-+.-
T Consensus 49 l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 49 LREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 189
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=22.43 E-value=1.6e+02 Score=23.67 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=15.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 014917 333 KCNEVCQLEKDLTVEIQELEKQKDELEI 360 (416)
Q Consensus 333 K~~Ev~~~EKel~~EI~~LekqkdeLEA 360 (416)
|..|...--++|..||..|+++.+++.+
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444455666666666666665543
No 190
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.41 E-value=3.8e+02 Score=29.53 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
..+.++..+|..-=++.+.|-.++.++|.++..+
T Consensus 164 ~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~ 197 (627)
T PRK06665 164 RIRDMANDEIEITVEEINNILRNIADLNEQIVKS 197 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444444433
No 191
>PRK14154 heat shock protein GrpE; Provisional
Probab=22.32 E-value=3.9e+02 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
++..+|..|+++.++|...+.+..+-....+.|...-+++
T Consensus 56 ~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~ 95 (208)
T PRK14154 56 KLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKAD 95 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888888877777777776554444
No 192
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.05 E-value=3e+02 Score=21.00 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
.+..||..|+++.++|.++-.+++..+.
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555544443
No 193
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=21.93 E-value=3e+02 Score=23.02 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 340 LEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 340 ~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
++..+..=+..|+++++.++.++++++.++..-...+...+.+
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 194
>PHA02107 hypothetical protein
Probab=21.86 E-value=1.1e+02 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=29.0
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 325 EALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 325 eAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
-+++|-- .--+|+-.||.+|+.+|.|.|+-.|-+..++
T Consensus 177 G~~~F~S-------~Ri~EID~EI~~LQA~RKEiEDN~K~IKN~I 214 (216)
T PHA02107 177 GVFHFAS-------VRISEIDEEIKELQARRKEIEDNIKSIKNAI 214 (216)
T ss_pred HHhhhhh-------hhHhHHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666643 3346788999999999999999998765543
No 195
>PLN02678 seryl-tRNA synthetase
Probab=21.82 E-value=5.4e+02 Score=27.59 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
++.+|+..|-++..+||++++.+...+.....++=|.-.+
T Consensus 75 ~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~ 114 (448)
T PLN02678 75 ELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHD 114 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 5666777777777777777777777777766666554433
No 196
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=21.82 E-value=9.3e+02 Score=25.20 Aligned_cols=99 Identities=24% Similarity=0.267 Sum_probs=60.1
Q ss_pred ccCCCCcchhhHhhhhHHHHHHHH---hhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHH-HHHHHHHHHHhHHH
Q 014917 282 LRNGDSPEQHGVKVHKLKIFSESL---VNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKD-LTVEIQELEKQKDE 357 (416)
Q Consensus 282 l~~GdSpe~ha~kVdKLKvlsESL---anStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKe-l~~EI~~Lekqkde 357 (416)
.+.|..++...-.|+..+.+..-+ .++.++++.+|-..-.+. +|++.++|- +..=+..+-++.++
T Consensus 162 ~~~~~v~~~~~~~~~l~~a~~s~~~~~~k~~~~~~~~i~~~~~e~-----------~e~~~~~k~~~~~~~e~~~k~lee 230 (325)
T KOG2669|consen 162 SSLGEVHEKIDSSVELVRALQSLENAASKLDAVLEERIARLPQEV-----------EEVSSLEKITLNSLIESLAKHLEE 230 (325)
T ss_pred CCccccchhHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444443334555555544333 234456677766554444 455556654 55567778888899
Q ss_pred HHHHHHHHhhhHHHHHH-HHHhhHHHHHhHHHHHH
Q 014917 358 LEIALKKVNTSLVTTRA-RLRNAKEEREQFDEANN 391 (416)
Q Consensus 358 LEAeLkkVn~sL~aA~a-Rl~~~rEERdqFdEAnn 391 (416)
.+-.|++||..|.+=.. |...++..||.|.+...
T Consensus 231 ~~~lL~e~~~~L~s~~~~~~~~~~~l~d~l~~q~~ 265 (325)
T KOG2669|consen 231 EEMLLREVNPRLAAEEESRRQLVSMLRDALREQKE 265 (325)
T ss_pred HHHHHHHHHHHhcccchhhhhhHHHHHHHHhhhhc
Confidence 99999999988876422 56667777777766543
No 197
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.78 E-value=1e+02 Score=27.17 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
.++..+|..|+++.++|..++.+....+...+.|+.
T Consensus 14 ~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~ 49 (165)
T PF01025_consen 14 EELEEELEELEKEIEELKERLLRLQAEFENYRKRLE 49 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666776666666666665555554
No 198
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.75 E-value=4.4e+02 Score=24.39 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAK 380 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~r 380 (416)
+...|..|.+....|+.+++..-..|..++.-|..+-
T Consensus 27 ~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 27 NQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666665554
No 199
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.73 E-value=3e+02 Score=30.07 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHhhhH
Q 014917 353 KQKDELEIALKKVNTSL 369 (416)
Q Consensus 353 kqkdeLEAeLkkVn~sL 369 (416)
+++.++|+.|++.+..+
T Consensus 97 aq~~dle~KIkeLEaE~ 113 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDN 113 (475)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 55555555555444433
No 200
>PRK05287 hypothetical protein; Provisional
Probab=21.66 E-value=8.2e+02 Score=24.47 Aligned_cols=45 Identities=27% Similarity=0.281 Sum_probs=36.5
Q ss_pred HHH-HHHhhhhhhhhhhhhcccCCCCcchhhHhhhhHHHHHHHHhh
Q 014917 263 LEQ-IQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVN 307 (416)
Q Consensus 263 laq-irlCS~lE~llLkkksl~~GdSpe~ha~kVdKLKvlsESLan 307 (416)
|++ ||.+=|||-|+-+=....++|++..|-.-...|=.+-|-+.-
T Consensus 11 LNEriRt~LRLE~Lf~ql~~~~~~~~~~~h~~~~~~Lfelldv~~R 56 (250)
T PRK05287 11 LNEKIRTYLRLEFLFQQLTFNLAQDDPADHHVAFRTLFELLDVLER 56 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhh
Confidence 455 999999999999999999999999998777777665554443
No 201
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.61 E-value=3.4e+02 Score=23.36 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=27.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRARLRNAKE 381 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rE 381 (416)
|+..|.++...|..|-+.+++.+..+..|=+|...
T Consensus 31 ~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~ 65 (87)
T PF10883_consen 31 QNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEEN 65 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 38888888888888888888888888777766433
No 202
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=21.46 E-value=2e+02 Score=27.82 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHhhhcC
Q 014917 149 DEEEVSLLLEIFGLCLAG 166 (416)
Q Consensus 149 ~eeEvsLLlEiFglCL~G 166 (416)
+++-+.+|.|+||.||.|
T Consensus 54 d~~~~~~l~~~lg~~L~~ 71 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTG 71 (304)
T ss_pred CHHHHHHHHHHHhHHhcC
Confidence 445699999999999999
No 203
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=21.45 E-value=31 Score=30.54 Aligned_cols=85 Identities=20% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHH
Q 014917 315 RILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKIL 394 (416)
Q Consensus 315 RI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi 394 (416)
+|+++-.+.|.+= .++..|--..+-.+|+.+|......+..-..||+.+...++.-...-...++.-+++++--++++
T Consensus 8 ~~l~~l~~LE~~G--~v~~~n~yQ~lln~IA~dI~~~~~~r~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi~~~l 85 (142)
T PF03836_consen 8 KILENLKELESLG--IVSRSNNYQDLLNDIAKDIRNKRRYREQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYIKNCL 85 (142)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHCC--CCCCcccHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544444332 36667888889999999999999999999999999999999988888888999999999888888
Q ss_pred HHHhhhh
Q 014917 395 VYFKSKM 401 (416)
Q Consensus 395 ~~Lk~K~ 401 (416)
..+..+-
T Consensus 86 ~~~~~~~ 92 (142)
T PF03836_consen 86 SNLQSKK 92 (142)
T ss_dssp -------
T ss_pred HHhccCC
Confidence 8887764
No 204
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=21.44 E-value=5.9e+02 Score=26.48 Aligned_cols=57 Identities=25% Similarity=0.443 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHH-------------HHHHHHHhhHHHHHhHHHHHHHHHHHHh
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLV-------------TTRARLRNAKEEREQFDEANNKILVYFK 398 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~-------------aA~aRl~~~rEERdqFdEAnnqIi~~Lk 398 (416)
.++..++..|+++..++..+|.+++..|. .....++..++.+.++.+.-+++-..++
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555444444444432 2234555556666666555555555554
No 205
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.35 E-value=3.5e+02 Score=23.29 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 335 NEVCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 335 ~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
.++.+--.++..|++.|+.+.++|+.|++.++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444556667777888888888888887766
No 206
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=21.32 E-value=6.1e+02 Score=28.30 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 294 KVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 294 kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
.|.+|+-=-+...+-...-|..|.+-+.|-.+... ..=....++.|..+.+|+..|.+.++.|+.+|...
T Consensus 37 ev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~--~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaq 106 (617)
T PF15070_consen 37 EVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP--PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQ 106 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443334444444555555554444333331 11123567888999999999999999999888653
No 207
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.26 E-value=1e+02 Score=26.87 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=22.8
Q ss_pred hHHHHHHHH----HHHHHHHHhHHHHHHHHHHHh
Q 014917 337 VCQLEKDLT----VEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 337 v~~~EKel~----~EI~~LekqkdeLEAeLkkVn 366 (416)
|..+-..+. .||..|+.+.|+|+++|.++.
T Consensus 83 v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 83 VEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 799999999999999998764
No 208
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.19 E-value=3.4e+02 Score=25.69 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
++..+|..|+++.++|...+.+..+-....+-|..+-+++
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777666666666666666555544443
No 209
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=21.12 E-value=9.2e+02 Score=27.14 Aligned_cols=109 Identities=11% Similarity=0.160 Sum_probs=68.6
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhh-hhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 294 KVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRL-AKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 294 kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv-~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
.++.+----..|++.-+..-.|-.= ..+-++|.-|. .-.+.+...++++-.+|...=.+.+.|-.++.++|.++..+
T Consensus 108 ~L~~Ff~alq~la~~P~s~aaRq~v--l~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 108 ALQRFFTALQTAAANPTDTAARQLL--LTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4454444444455544333333211 22333343333 33567889999999999999999999999999999999876
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 373 RARLRNAKEEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 373 ~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
.+.=...-+=+||=|..=+++=..+..+..++
T Consensus 186 ~~~G~~~NdLlDqRD~Ll~eLS~~v~i~v~~~ 217 (676)
T PRK05683 186 SASGATPNDLLDARDEAVRQLNELVGVTVVER 217 (676)
T ss_pred hcCCCCchHhHHHHHHHHHHHHhhcCeEEEEc
Confidence 55433445566666666666666655555544
No 210
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.00 E-value=4e+02 Score=22.60 Aligned_cols=26 Identities=19% Similarity=0.459 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
...|..|+++.+.|+.+++.+..+|.
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 211
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.97 E-value=3.9e+02 Score=27.59 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=10.9
Q ss_pred hhHHhhhchhhhhhhhhhh
Q 014917 20 DTVVQTAGNAVTEGAKIIT 38 (416)
Q Consensus 20 dsVv~hAGqAva~GAkii~ 38 (416)
..|..+-|+.|..|.-|+.
T Consensus 71 ~~i~V~eG~~V~~G~~L~~ 89 (457)
T TIGR01000 71 KENYLKENKFVKKGDLLVV 89 (457)
T ss_pred EEEEcCCCCEecCCCEEEE
Confidence 3333345777777766553
No 212
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.77 E-value=1.8e+02 Score=24.04 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhh
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNA 379 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~ 379 (416)
+-+..=+.-++++.+.|+.++++++..+.....++...
T Consensus 73 ~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 73 MSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQL 110 (120)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555555555555444443
No 213
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=20.73 E-value=1.4e+02 Score=24.66 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 355 KDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 355 kdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
.++|++++||.|+.-.++.+.||-.-|+
T Consensus 4 ~~eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688999999999999999999965554
No 214
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.69 E-value=1.3e+03 Score=26.62 Aligned_cols=72 Identities=26% Similarity=0.272 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRL 407 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr~ 407 (416)
|++.-=-+...+|.+-.+..+.|+-++|..++.|....--+.-.|+|++--++--.+..--+..=+-+-||+
T Consensus 451 e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rL 522 (716)
T KOG4593|consen 451 EMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRL 522 (716)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444446678899999999999999999999999999999999999999876443333333333333344443
No 215
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.65 E-value=2.8e+02 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
..+=.+|+..-+.|.+|..-++.-++.-++.+.
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444433
No 216
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.57 E-value=1.1e+03 Score=25.70 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=33.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHH-------HHHHhhHHH-HHhHHHHHHHHHHHHhhhhhhhhHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTR-------ARLRNAKEE-REQFDEANNKILVYFKSKMSCQDRL 407 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~-------aRl~~~rEE-RdqFdEAnnqIi~~Lk~K~s~~dr~ 407 (416)
++..+..+..++++++..+.+.+.+.+ +.|.+++++ ..||..-.|+|+.+=..|-+++.+-
T Consensus 68 ~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~ 136 (475)
T PRK10361 68 EVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQ 136 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555554444332 223333332 3788888888887766666665554
No 217
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.56 E-value=1.6e+03 Score=27.32 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHHHHHHHH-HHHhhhHHHHHHHHHhhHHHHHhHHHHHH
Q 014917 344 LTVEIQELEKQKDELEIAL-KKVNTSLVTTRARLRNAKEEREQFDEANN 391 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeL-kkVn~sL~aA~aRl~~~rEERdqFdEAnn 391 (416)
+..++..|+||...+++++ +.++..+....-.+.....|.+.|.+-+|
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~ 418 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQIN 418 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777 66777777777777777777777777333
No 218
>PRK10869 recombination and repair protein; Provisional
Probab=20.38 E-value=1.1e+03 Score=25.52 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHH---HHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH-HhHHHHHHHHHHHH
Q 014917 335 NEVCQLEKDLTVEIQEL---EKQKDELEIALKKVNTSLVTTRARLRNAKEER-EQFDEANNKILVYF 397 (416)
Q Consensus 335 ~Ev~~~EKel~~EI~~L---ekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER-dqFdEAnnqIi~~L 397 (416)
.++-..-+++..|++.| +....+|+++++++...+..+...|+..|.+- ..|.++-++.+..|
T Consensus 320 ~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L 386 (553)
T PRK10869 320 EELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHEL 386 (553)
T ss_pred HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444555555443 34566677777777777777777777666542 34554444444333
No 219
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.30 E-value=5.5e+02 Score=23.42 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 014917 344 LTVEIQELEK 353 (416)
Q Consensus 344 l~~EI~~Lek 353 (416)
...||..|++
T Consensus 159 ~~~ei~~lk~ 168 (192)
T PF05529_consen 159 LSEEIEKLKK 168 (192)
T ss_pred hHHHHHHHHH
Confidence 3334433333
No 220
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.26 E-value=6.9e+02 Score=26.63 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=55.5
Q ss_pred HhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhH-----HHHHhHHHHHHHHH
Q 014917 320 RSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAK-----EEREQFDEANNKIL 394 (416)
Q Consensus 320 R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~r-----EERdqFdEAnnqIi 394 (416)
|.|+|-+-.-| -..|+...-++|.+|+..||.|.-.|.....-++++...|...+.|+. |-++-=+--..||+
T Consensus 229 ~~~aeq~slkR--t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l 306 (365)
T KOG2391|consen 229 RLQAEQESLKR--TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQIL 306 (365)
T ss_pred HHHHHHHHHHh--hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHH
Confidence 44555433333 356788888889999999999999998888888888888877777621 11111112246777
Q ss_pred HHHhhhhhhhhH
Q 014917 395 VYFKSKMSCQDR 406 (416)
Q Consensus 395 ~~Lk~K~s~~dr 406 (416)
..+.----|.|-
T Consensus 307 ~~~A~d~aieD~ 318 (365)
T KOG2391|consen 307 ECYALDLAIEDA 318 (365)
T ss_pred HhhhhhhHHHHH
Confidence 666655555553
No 221
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=20.13 E-value=97 Score=27.75 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKK 364 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkk 364 (416)
-++..+|..|+.|...||.++++
T Consensus 86 ~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 86 DELTERVDALERQVADLENKLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 35778899999999999998873
No 222
>PLN02381 valyl-tRNA synthetase
Probab=20.11 E-value=2e+02 Score=33.63 Aligned_cols=30 Identities=17% Similarity=0.385 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
.+.+|+..|+|+.+.|+.++.++...|+..
T Consensus 994 D~~~E~~rL~K~l~klekei~~~~~kLsN~ 1023 (1066)
T PLN02381 994 NAEAELEKLRNKMDEIQKQQEKLEKKMNAS 1023 (1066)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 367889999999999999999998888764
Done!