Query 014917
Match_columns 416
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 03:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 91.9 7.6 0.00026 35.7 16.4 19 215-233 12-30 (256)
2 2eqb_B RAB guanine nucleotide 88.8 2 7E-05 36.1 8.5 29 347-375 13-41 (97)
3 2bnx_A Diaphanous protein homo 86.7 3.5 0.00012 40.2 10.0 56 126-183 92-149 (386)
4 1ic2_A Tropomyosin alpha chain 85.2 4.3 0.00015 31.9 8.1 40 343-382 38-77 (81)
5 2ocy_A RAB guanine nucleotide 78.4 28 0.00096 31.1 11.7 64 352-415 78-144 (154)
6 3oja_B Anopheles plasmodium-re 78.2 17 0.0006 35.7 11.3 65 342-406 519-583 (597)
7 2dfs_A Myosin-5A; myosin-V, in 77.7 8.2 0.00028 42.8 9.7 49 111-161 659-712 (1080)
8 3vkg_A Dynein heavy chain, cyt 74.5 26 0.0009 43.5 13.5 92 298-393 1943-2058(3245)
9 3u1c_A Tropomyosin alpha-1 cha 74.3 34 0.0012 27.9 11.8 37 343-379 41-77 (101)
10 3oja_B Anopheles plasmodium-re 72.9 25 0.00086 34.5 10.9 45 342-386 533-577 (597)
11 3ghg_C Fibrinogen gamma chain; 70.0 24 0.00081 35.8 10.1 85 294-378 39-123 (411)
12 3u59_A Tropomyosin beta chain; 69.3 44 0.0015 27.0 11.4 41 343-383 41-81 (101)
13 2ocy_A RAB guanine nucleotide 68.6 65 0.0022 28.8 15.3 41 347-396 66-106 (154)
14 1jnm_A Proto-oncogene C-JUN; B 68.3 15 0.00051 27.5 6.3 48 311-365 1-48 (62)
15 1i84_S Smooth muscle myosin he 68.0 22 0.00074 39.4 10.1 18 310-327 881-898 (1184)
16 2p22_A Suppressor protein STP2 67.5 38 0.0013 30.7 10.0 79 286-367 5-84 (174)
17 3vkg_A Dynein heavy chain, cyt 66.8 2.6E+02 0.009 35.1 20.9 60 335-394 2038-2097(3245)
18 3mq9_A Bone marrow stromal ant 65.0 47 0.0016 32.0 10.8 28 109-136 126-153 (471)
19 2wuj_A Septum site-determining 64.1 6.9 0.00024 29.2 3.8 43 327-369 15-57 (57)
20 2f31_A Diaphanous protein homo 62.4 8.1 0.00028 34.8 4.6 55 126-182 88-144 (233)
21 1ci6_A Transcription factor AT 61.1 29 0.001 26.2 6.8 41 321-365 9-49 (63)
22 3na7_A HP0958; flagellar bioge 60.5 1E+02 0.0035 28.2 15.6 32 331-366 86-117 (256)
23 3q8t_A Beclin-1; autophagy, AT 60.1 69 0.0024 26.1 9.5 32 336-367 15-46 (96)
24 1dh3_A Transcription factor CR 58.7 26 0.00088 26.0 6.0 48 313-367 3-50 (55)
25 1t2k_D Cyclic-AMP-dependent tr 56.4 41 0.0014 24.9 6.8 44 323-366 10-56 (61)
26 2e7s_A RAB guanine nucleotide 53.8 68 0.0023 28.2 8.8 64 351-414 65-131 (135)
27 4etp_A Kinesin-like protein KA 51.3 43 0.0015 33.1 8.0 49 343-394 7-55 (403)
28 3m0a_A TNF receptor-associated 49.8 77 0.0026 23.5 7.7 63 344-410 3-65 (66)
29 1t3j_A Mitofusin 1; coiled coi 49.0 83 0.0029 26.3 8.2 34 333-366 41-74 (96)
30 3oja_A Leucine-rich immune mol 48.9 1.8E+02 0.006 28.1 11.8 47 337-383 433-479 (487)
31 2e7s_A RAB guanine nucleotide 48.9 22 0.00074 31.4 4.9 44 344-396 51-94 (135)
32 3m0d_C TNF receptor-associated 46.5 80 0.0027 23.9 7.2 18 391-408 47-64 (65)
33 2v71_A Nuclear distribution pr 46.1 1.4E+02 0.0048 27.4 10.0 44 338-381 41-84 (189)
34 4dci_A Uncharacterized protein 44.3 1.5E+02 0.0052 26.2 9.7 60 339-398 29-101 (150)
35 2k48_A Nucleoprotein; viral pr 44.1 85 0.0029 26.9 7.6 53 356-408 38-98 (107)
36 1i84_S Smooth muscle myosin he 43.9 1.2E+02 0.004 33.6 10.8 7 137-143 507-513 (1184)
37 3q8t_A Beclin-1; autophagy, AT 42.2 96 0.0033 25.2 7.5 57 336-392 29-89 (96)
38 3hnw_A Uncharacterized protein 41.7 1.6E+02 0.0056 25.3 9.3 35 348-382 77-111 (138)
39 3eg5_B Protein diaphanous homo 39.8 35 0.0012 33.3 5.3 56 126-183 154-211 (383)
40 3ghg_A Fibrinogen alpha chain; 39.7 2.3E+02 0.0079 30.1 11.5 90 293-390 64-154 (562)
41 2yy0_A C-MYC-binding protein; 39.5 34 0.0012 25.5 4.0 27 344-370 24-50 (53)
42 2lw1_A ABC transporter ATP-bin 38.7 87 0.003 24.6 6.6 21 344-364 27-47 (89)
43 2ic6_A Nucleocapsid protein; h 38.1 1.4E+02 0.0047 24.3 7.6 54 355-408 7-68 (78)
44 2ion_A PDCD4, programmed cell 37.9 50 0.0017 28.5 5.5 83 125-213 39-121 (152)
45 2ic9_A Nucleocapsid protein; h 37.7 1.3E+02 0.0043 25.4 7.6 54 355-408 7-68 (96)
46 2yin_A DOCK2, dedicator of cyt 35.9 15 0.00052 36.6 2.1 55 114-177 349-407 (436)
47 1zme_C Proline utilization tra 35.7 27 0.00093 25.2 3.0 23 348-370 46-68 (70)
48 1gd2_E Transcription factor PA 35.5 43 0.0015 26.3 4.2 29 313-344 10-38 (70)
49 3viq_B Mating-type switching p 35.1 29 0.001 28.5 3.3 28 343-370 5-32 (85)
50 4fi5_A Nucleoprotein; structur 34.0 1.5E+02 0.0051 25.6 7.6 54 355-408 24-85 (113)
51 2nsz_A Programmed cell death p 33.3 69 0.0024 26.6 5.4 84 125-214 37-120 (129)
52 3eir_A Putative ATP/GTP bindin 32.9 27 0.00091 33.7 3.1 53 110-163 179-241 (281)
53 3mq9_A Bone marrow stromal ant 32.5 68 0.0023 30.9 6.0 64 309-379 406-469 (471)
54 3plt_A Sphingolipid long chain 32.3 2.8E+02 0.0095 26.3 9.9 48 344-393 116-169 (234)
55 2zqm_A Prefoldin beta subunit 32.3 95 0.0032 24.5 5.9 26 345-370 83-108 (117)
56 2lw1_A ABC transporter ATP-bin 32.2 1.3E+02 0.0045 23.6 6.7 26 346-371 22-47 (89)
57 2z5i_A TM, general control pro 31.8 83 0.0029 23.3 5.0 21 347-367 13-33 (52)
58 2wt7_B Transcription factor MA 31.6 1.5E+02 0.0051 24.4 7.0 49 324-376 37-85 (90)
59 2wt7_A Proto-oncogene protein 31.6 1.6E+02 0.0055 21.9 7.9 36 323-362 11-46 (63)
60 4gyt_A Uncharacterized protein 31.1 1.2E+02 0.004 26.7 6.8 144 136-291 33-194 (194)
61 3cve_A Homer protein homolog 1 31.0 2E+02 0.0068 22.8 8.0 53 345-404 6-58 (72)
62 1fxk_A Prefoldin; archaeal pro 30.6 89 0.003 24.4 5.4 25 345-369 78-102 (107)
63 2zqm_A Prefoldin beta subunit 30.4 1.5E+02 0.0051 23.4 6.8 42 336-377 67-108 (117)
64 3cvf_A Homer-3, homer protein 30.3 1.2E+02 0.0042 24.4 6.2 36 369-404 29-64 (79)
65 4dnd_A Syntaxin-10, SYN10; str 28.9 2.7E+02 0.0092 23.7 9.7 94 302-402 33-129 (130)
66 1m1j_B Fibrinogen beta chain; 28.9 4.9E+02 0.017 26.7 14.5 23 294-316 101-123 (464)
67 3tnu_B Keratin, type II cytosk 28.7 1.6E+02 0.0056 24.4 7.0 29 342-370 46-74 (129)
68 3qne_A Seryl-tRNA synthetase, 28.5 1.9E+02 0.0065 29.7 8.7 33 343-375 75-107 (485)
69 2dgc_A Protein (GCN4); basic d 28.4 1.2E+02 0.0043 22.9 5.6 43 322-368 17-59 (63)
70 2gd5_A Charged multivesicular 27.9 2.8E+02 0.0096 24.1 8.7 37 336-372 11-47 (179)
71 2eqb_B RAB guanine nucleotide 27.8 2.7E+02 0.0092 23.3 12.4 49 352-400 46-95 (97)
72 1m1j_B Fibrinogen beta chain; 27.6 4E+02 0.014 27.3 10.9 44 334-377 116-159 (464)
73 2efr_A General control protein 26.8 3.4E+02 0.011 24.1 10.7 48 347-394 99-150 (155)
74 3mv2_A Coatomer subunit alpha; 26.2 29 0.001 34.2 2.2 55 6-60 20-74 (325)
75 1xaw_A Occludin; coiled-coil, 25.9 3.4E+02 0.012 23.9 8.7 64 342-406 62-137 (140)
76 3mq7_A Bone marrow stromal ant 25.2 2.3E+02 0.0077 24.8 7.3 39 344-382 62-100 (121)
77 1fxk_A Prefoldin; archaeal pro 24.8 2E+02 0.0069 22.3 6.5 41 336-376 62-102 (107)
78 1f5n_A Interferon-induced guan 24.6 3.8E+02 0.013 27.9 10.2 18 379-396 535-552 (592)
79 3mov_A Lamin-B1; LMNB1, B-type 24.2 1.5E+02 0.0052 24.1 5.8 34 335-368 26-59 (95)
80 3tnu_A Keratin, type I cytoske 24.2 2.8E+02 0.0097 23.1 7.7 29 342-370 48-76 (131)
81 3u06_A Protein claret segregat 24.0 1.8E+02 0.006 29.0 7.3 43 343-385 7-49 (412)
82 3fpp_A Macrolide-specific effl 23.9 1.3E+02 0.0043 27.4 5.9 7 294-300 52-58 (341)
83 1gax_A Valrs, valyl-tRNA synth 23.6 1.2E+02 0.004 33.0 6.4 50 343-392 797-850 (862)
84 3gp4_A Transcriptional regulat 22.4 3.4E+02 0.012 22.7 8.5 43 344-386 86-128 (142)
85 4e61_A Protein BIM1; EB1-like 22.2 1.9E+02 0.0065 24.5 6.2 13 373-385 31-43 (106)
86 1nlw_A MAD protein, MAX dimeri 22.0 1E+02 0.0035 24.2 4.2 29 336-364 51-79 (80)
87 3efy_A CIF (cell cycle inhibit 21.9 48 0.0016 30.7 2.6 38 103-143 76-115 (195)
88 1j1d_B Troponin T, TNT; THIN f 21.6 3.6E+02 0.012 22.6 8.3 62 314-378 27-88 (106)
89 3m9b_A Proteasome-associated A 21.6 93 0.0032 29.8 4.6 36 350-385 58-93 (251)
90 1deq_A Fibrinogen (alpha chain 21.5 4E+02 0.014 27.1 9.3 100 301-404 54-153 (390)
91 4fbj_A CIF, hypothetical prote 21.1 96 0.0033 29.8 4.6 54 108-162 146-209 (261)
92 1mji_A 50S ribosomal protein L 21.0 42 0.0014 30.5 2.0 79 61-163 92-179 (182)
93 3qh9_A Liprin-beta-2; coiled-c 20.2 2.5E+02 0.0085 23.0 6.2 43 327-369 31-77 (81)
94 1nkp_B MAX protein, MYC proto- 20.1 1.3E+02 0.0045 23.1 4.5 23 343-365 58-80 (83)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.88 E-value=7.6 Score=35.66 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=11.5
Q ss_pred cchhchHHHHHHHhhhhhc
Q 014917 215 DLPRIDAEARGLIGKLDKI 233 (416)
Q Consensus 215 di~RiD~Ea~~L~~kl~~~ 233 (416)
++..||.++..|..++...
T Consensus 12 ~LQ~lD~~i~~l~~~~~~l 30 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREK 30 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3455676666666666554
No 2
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.83 E-value=2 Score=36.05 Aligned_cols=29 Identities=7% Similarity=0.245 Sum_probs=11.8
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRAR 375 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aR 375 (416)
+|..|+.+....+++++++...|...+.+
T Consensus 13 ~l~~le~~~~~~~~e~~~L~~~l~eE~~~ 41 (97)
T 2eqb_B 13 DYNTLKRELSDRDDEVKRLREDIAKENEL 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333333
No 3
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=86.67 E-value=3.5 Score=40.23 Aligned_cols=56 Identities=9% Similarity=0.217 Sum_probs=43.3
Q ss_pred hhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHH-hhhcCcHH-HHHHHHHhHHHHHH
Q 014917 126 FRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFG-LCLAGGKE-VHSAVMSSIQDLAT 183 (416)
Q Consensus 126 FrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFg-lCL~GGke-vh~Ai~ssiqdLA~ 183 (416)
+..|+-+..++-.|+.| +-+|+..-+.+.+|+++ +|+.++.+ +|..|++++...+.
T Consensus 92 l~~vl~~~~~i~~l~~s--L~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 92 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHSSSHHHHHHHT--CCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH--hCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 55677777777666666 56888888888999887 99987644 79999999988653
No 4
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.16 E-value=4.3 Score=31.87 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
..-.||..|.++.-.||.+|-+++..|..|...|..+..-
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999999999999999999999999998876543
No 5
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.43 E-value=28 Score=31.13 Aligned_cols=64 Identities=22% Similarity=0.342 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHHHhhhH-HHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhHH--HHHHhhhc
Q 014917 352 EKQKDELEIALKKVNTSL-VTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRL--LLVELKQM 415 (416)
Q Consensus 352 ekqkdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr~--~~~~~~~~ 415 (416)
|+++..++.||-.+.++| ..|+--...+|-+|..++.=|.+...-|+-|+.-++.+ -|.+||++
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666776666665 56777777889999999999999999999888877765 35566653
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.19 E-value=17 Score=35.68 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDR 406 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr 406 (416)
..+..+.+.++++.+++.++++++..+...-..++...++.....-+-++++..-+|..+.+.++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 519 AFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344445555555555555655555555555555555544444444455555556665555543
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.67 E-value=8.2 Score=42.84 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=25.5
Q ss_pred EEEecCCCCCCCCcchhhhhhhhh-----hhhhhhhHhhccCCChhHHHHHHHHHH
Q 014917 111 VYFVDPDSGGGEPMNFRDVFLFSQ-----ALEGITLSMILEAPDEEEVSLLLEIFG 161 (416)
Q Consensus 111 vly~D~d~ggGePmnFrdVFL~Sq-----ALEgI~lSmileaP~eeEvsLLlEiFg 161 (416)
|--+=|... -.|..|-......| -||+|-++- ...|.----.-.+.-|+
T Consensus 659 VRCIkPN~~-k~p~~fd~~~V~~QLr~~GvlE~iri~r-~Gyp~R~~~~eF~~RY~ 712 (1080)
T 2dfs_A 659 VRCIKPNDF-KFPFTFDEKRAVQQLRACGVLETIRISA-AGFPSRWTYQEFFSRYR 712 (1080)
T ss_dssp EEEECCCSS-CCTTCCCHHHHHHHHHTTTHHHHHHHHT-TSCCEEEEHHHHHHHHT
T ss_pred EEEecCCCC-CCchhcCHHhhHHHHhhcccHHHHhHHh-cCCCchhhHHHHHHHHH
Confidence 333566665 67888876665544 467665432 23343333333444444
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.47 E-value=26 Score=43.48 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhH--------------------HH
Q 014917 298 LKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQK--------------------DE 357 (416)
Q Consensus 298 LKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~Lekqk--------------------de 357 (416)
|.++..-|...+.+||+-+..--.++++|=. |-.+|.+.|+++..+-.+.+++| .+
T Consensus 1943 L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~----~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ 2018 (3245)
T 3vkg_A 1943 LAQKNRELDVKNEQANQKLKQMVQDQQAAEI----KQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQ 2018 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Confidence 3344445677777777766665555555532 22334444444443333333333 34
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhHH----HHHhHHHHHHHH
Q 014917 358 LEIALKKVNTSLVTTRARLRNAKE----EREQFDEANNKI 393 (416)
Q Consensus 358 LEAeLkkVn~sL~aA~aRl~~~rE----ERdqFdEAnnqI 393 (416)
+|++|++.+..|+++++.|....+ =+++|+++..+.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555543332 246677766554
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.33 E-value=34 Score=27.90 Aligned_cols=37 Identities=30% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhh
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNA 379 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~ 379 (416)
.+-.||..|.++...||.+|-+++..|..|...|..+
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999998888766
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.87 E-value=25 Score=34.55 Aligned_cols=45 Identities=18% Similarity=0.210 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQF 386 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 386 (416)
.+...++..++++++++|.++++....+....-...+++.|-.|.
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555544444444444444444333
No 11
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=70.04 E-value=24 Score=35.83 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=56.2
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHH
Q 014917 294 KVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTR 373 (416)
Q Consensus 294 kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~ 373 (416)
.|+-|+..-++++|+|+.|+..|..-..--..+.+-+-...+-+.+.=|....|+..+|......+.++..+...++...
T Consensus 39 ~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 118 (411)
T 3ghg_C 39 DLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNN 118 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57789999999999999999988765432222222222223445555566788888888877777777776666665555
Q ss_pred HHHHh
Q 014917 374 ARLRN 378 (416)
Q Consensus 374 aRl~~ 378 (416)
.++.+
T Consensus 119 ~~i~~ 123 (411)
T 3ghg_C 119 QKIVN 123 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 12
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.27 E-value=44 Score=27.02 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
.+..||..|.++.-.||.++.+++..|..+...|..+..-+
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~ 81 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678999999999999999999999999998887764444
No 13
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.61 E-value=65 Score=28.78 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVY 396 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~ 396 (416)
++..=.++|.+.|.++++++.-|..-.|- -|+|||+-+...
T Consensus 66 ~l~~E~~~R~~aE~~~~~ie~ElEeLTas---------LFeEAN~MVa~a 106 (154)
T 2ocy_A 66 DIAKENELRTKAEEEADKLNKEVEDLTAS---------LFDEANNMVADA 106 (154)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 33333344444444444444444333332 499999876654
No 14
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=68.33 E-value=15 Score=27.48 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=30.3
Q ss_pred HHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 311 KAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
|.|+|..-| ++-|..+|-.|-..+..+|.+ +..|+.+.++|..++..+
T Consensus 1 K~errr~rN---r~AA~k~R~rKk~~~~~Le~~----v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 1 KAERKRMRN---RIAASKSRKRKLERIARLEEK----VKTLKAQNSELASTANML 48 (62)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHh---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 345555555 467899999999888877754 334555555555544443
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=67.97 E-value=22 Score=39.36 Aligned_cols=18 Identities=11% Similarity=0.027 Sum_probs=8.2
Q ss_pred hHHHHHHhhhHhhhHHHh
Q 014917 310 SKAEKRILENRSQKEEAL 327 (416)
Q Consensus 310 skAEkRI~d~R~QKEeAl 327 (416)
...+.++...+.+++++.
T Consensus 881 ~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 881 KELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 16
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=67.48 E-value=38 Score=30.71 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCcchhhHhhhhHHHHHHHHhhhhhHHHH-HHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014917 286 DSPEQHGVKVHKLKIFSESLVNSTSKAEK-RILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKK 364 (416)
Q Consensus 286 dSpe~ha~kVdKLKvlsESLanStskAEk-RI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkk 364 (416)
=||..|-+.++||+-+-.+|..-+..-.+ .|..+-.+-+.+|.=| ..+++.....|..++..|++++..|+.++..
T Consensus 5 ~~~~~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~---~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~ 81 (174)
T 2p22_A 5 ISPTNHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARF---HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDV 81 (174)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999998866666554443222 3444555555665533 3566677777888888888888888888777
Q ss_pred Hhh
Q 014917 365 VNT 367 (416)
Q Consensus 365 Vn~ 367 (416)
+..
T Consensus 82 l~~ 84 (174)
T 2p22_A 82 LTA 84 (174)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 17
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.82 E-value=2.6e+02 Score=35.12 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHH
Q 014917 335 NEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKIL 394 (416)
Q Consensus 335 ~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi 394 (416)
.++.+.-.++.++.+.+-++++.|+++...+..+|..|..=+...-.|+....+..+++-
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 444444455667777777788889999999999999999888888888887777665543
No 18
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.00 E-value=47 Score=31.97 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=21.4
Q ss_pred ceEEEecCCCCCCCCcchhhhhhhhhhh
Q 014917 109 TVVYFVDPDSGGGEPMNFRDVFLFSQAL 136 (416)
Q Consensus 109 ~~vly~D~d~ggGePmnFrdVFL~SqAL 136 (416)
..++||+.|.---.|-|+-|++=..++|
T Consensus 126 ~~~l~YNkdl~~~~P~Twdel~~~a~~l 153 (471)
T 3mq9_A 126 ALSLIYNKDLLPNPPKTWEEIPALDKEL 153 (471)
T ss_dssp ECEEEEETTTCSSCCSBGGGHHHHHHHH
T ss_pred ceEEEEEhHHhcCCCCCHHHHHHHHHHH
Confidence 3678899988645688988888777766
No 19
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=64.07 E-value=6.9 Score=29.22 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=35.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 327 LHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 327 l~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
..||+-...||..---+|..++..|.++..+|+.+++..+.+|
T Consensus 15 ~~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 15 KSFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp EETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3688889999999999999999999999999999998877653
No 20
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=62.40 E-value=8.1 Score=34.75 Aligned_cols=55 Identities=9% Similarity=0.194 Sum_probs=44.5
Q ss_pred hhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHH-hhhcCcHHH-HHHHHHhHHHHH
Q 014917 126 FRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFG-LCLAGGKEV-HSAVMSSIQDLA 182 (416)
Q Consensus 126 FrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFg-lCL~GGkev-h~Ai~ssiqdLA 182 (416)
+..|+-+.+++..|+.| +-+|+..-+.+.+|+++ +|+.+|.+- |..+++++...+
T Consensus 88 ~~~vl~~~~~i~~l~~~--L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~ 144 (233)
T 2f31_A 88 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERA 144 (233)
T ss_dssp HHHHHTSSSHHHHHHTT--CCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHH--hCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 55677777788766666 46889998999999988 999987665 999999998764
No 21
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.07 E-value=29 Score=26.22 Aligned_cols=41 Identities=29% Similarity=0.346 Sum_probs=25.8
Q ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014917 321 SQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 321 ~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkV 365 (416)
+-+.-|..||..|-.+...+|. +...|+++.++|++++..+
T Consensus 9 rNr~AA~R~R~KKk~~~~~le~----~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 9 QNKTAATRYRQKKRAEQEALTG----ECKELEKKNEALKERADSL 49 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3456789999999888776664 3344555555555544433
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=60.53 E-value=1e+02 Score=28.16 Aligned_cols=32 Identities=6% Similarity=0.162 Sum_probs=14.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 014917 331 LAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 331 v~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn 366 (416)
|+...|...+.+|+ ..++++...||.++..+.
T Consensus 86 v~~~kE~~aL~kEi----e~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 86 IKSERELRSLNIEE----DIAKERSNQANREIENLQ 117 (256)
T ss_dssp CSSSSHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 44555666655554 333344444443333333
No 23
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.05 E-value=69 Score=26.07 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
.+..-|.++..|+..|++.++.|.++|+.+..
T Consensus 15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~ 46 (96)
T 3q8t_A 15 ELALEEERLIQELEDVEKNRKVVAENLEKVQA 46 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455556666666666666666665555443
No 24
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.69 E-value=26 Score=26.05 Aligned_cols=48 Identities=35% Similarity=0.369 Sum_probs=34.5
Q ss_pred HHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 014917 313 EKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 313 EkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~ 367 (416)
.+|++.|| |.|...|..|-.-+.++|..+ ..|+++-..|..++..+..
T Consensus 3 ~rR~~~NR---esA~rSR~RKk~~~~~LE~~v----~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 3 EVRLMKNR---EAARESRRKKKEYVKSLENRV----AVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 46677776 789999999988887777653 4577776677666666544
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.39 E-value=41 Score=24.91 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=29.9
Q ss_pred hHHHhhhhhhhhhhhHHHHHH---HHHHHHHHHHhHHHHHHHHHHHh
Q 014917 323 KEEALHFRLAKCNEVCQLEKD---LTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKe---l~~EI~~LekqkdeLEAeLkkVn 366 (416)
++-|..+|-.|-..+..+|.+ +..|...|..+...|..|+..+-
T Consensus 10 r~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 10 RAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999998888777764 45566666666666666655543
No 26
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.79 E-value=68 Score=28.23 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=42.0
Q ss_pred HHHhHHHHHHHHHHHhhhH-HHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhHHH--HHHhhh
Q 014917 351 LEKQKDELEIALKKVNTSL-VTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLL--LVELKQ 414 (416)
Q Consensus 351 LekqkdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr~~--~~~~~~ 414 (416)
.|+++..++.||-.+.++| ..|+--..++|-+|..++.=|.+...-|+-|+.-++++- |.+||+
T Consensus 65 aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 65 AEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777665 567777788889999999999998888888887777642 455554
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.31 E-value=43 Score=33.10 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKIL 394 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi 394 (416)
++..||..|++++.+|+.++++....+.....++.....+|.+. .|+|.
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l---~n~~~ 55 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL---HNELQ 55 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 46678888888888888888888888888888888777777665 45544
No 28
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=49.76 E-value=77 Score=23.50 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQDRLLLV 410 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~dr~~~~ 410 (416)
+..++..|+.....+|- +-..++....++..+=+.-++.-...-.+|..|++|+..+||.+=+
T Consensus 3 ~~~~~~~le~k~~~~e~----iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~l~~ 65 (66)
T 3m0a_A 3 LLQRCESLEKKTATFEN----IVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHcc
Confidence 33444455555544443 2233555555655555544444444578999999999999998644
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.04 E-value=83 Score=26.29 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 014917 333 KCNEVCQLEKDLTVEIQELEKQKDELEIALKKVN 366 (416)
Q Consensus 333 K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn 366 (416)
=.+.|.++..++..||..|+++.+.||.-..+..
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3578999999999999999999999887554443
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.93 E-value=1.8e+02 Score=28.14 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHH
Q 014917 337 VCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEER 383 (416)
Q Consensus 337 v~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEER 383 (416)
+...++....||+.|+++++.|+.++-++...+..|.+.++.+....
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVRE 479 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHH
Confidence 55667788899999999999999999999999999999999887543
No 31
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.90 E-value=22 Score=31.36 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVY 396 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~ 396 (416)
|..++..-.++|.+.|.+.++++.-|..-.|-| |+|||+-+...
T Consensus 51 L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL---------FeEAN~MVa~a 94 (135)
T 2e7s_A 51 LREDIAKENELRTKAEEEADKLNKEVEDLTASL---------FDEANNLVADA 94 (135)
T ss_dssp HHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH---------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 444455555577777777777777776665544 99999877553
No 32
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=46.46 E-value=80 Score=23.91 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhhhHHH
Q 014917 391 NKILVYFKSKMSCQDRLL 408 (416)
Q Consensus 391 nqIi~~Lk~K~s~~dr~~ 408 (416)
-++|.+|+.|++.+|+.|
T Consensus 47 ~~~Ie~Le~kv~~l~~~l 64 (65)
T 3m0d_C 47 RERILSLEQRVVELQQTL 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 779999999999999854
No 33
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=46.13 E-value=1.4e+02 Score=27.38 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHH
Q 014917 338 CQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKE 381 (416)
Q Consensus 338 ~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rE 381 (416)
.++|.|+-.||..++|+--+|...+.++..-+..++.++....-
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888999999998888888888777777777666655543
No 34
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=44.32 E-value=1.5e+02 Score=26.23 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH---------HH---HHH-HhhHHHHHhHHHHHHHHHHHHh
Q 014917 339 QLEKDLTVEIQELEKQKDELEIALKKVNTSLVT---------TR---ARL-RNAKEEREQFDEANNKILVYFK 398 (416)
Q Consensus 339 ~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~a---------A~---aRl-~~~rEERdqFdEAnnqIi~~Lk 398 (416)
.+.+++.+-|..++.+..+||-|+|++-..... +. ..+ .....||..+.|.-+++.+.|.
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777665332221 11 112 3456788889999999988775
No 35
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.08 E-value=85 Score=26.89 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhHHHHHh-HHHHH-------HHHHHHHhhhhhhhhHHH
Q 014917 356 DELEIALKKVNTSLVTTRARLRNAKEEREQ-FDEAN-------NKILVYFKSKMSCQDRLL 408 (416)
Q Consensus 356 deLEAeLkkVn~sL~aA~aRl~~~rEERdq-FdEAn-------nqIi~~Lk~K~s~~dr~~ 408 (416)
.+|+.|++.-+.+|..|+-+|+.+.+.=++ =|+-| ...|.+|..|..++-|.+
T Consensus 38 eeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 38 QELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888899999988876642211 03333 456788899988887765
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.92 E-value=1.2e+02 Score=33.65 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.5
Q ss_pred hhhhhHh
Q 014917 137 EGITLSM 143 (416)
Q Consensus 137 EgI~lSm 143 (416)
|||..+.
T Consensus 507 Egi~~~~ 513 (1184)
T 1i84_S 507 EGIEWNF 513 (1184)
T ss_dssp HTCSCCC
T ss_pred cCCCccc
Confidence 5555444
No 37
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.24 E-value=96 Score=25.20 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHH----hHHHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEERE----QFDEANNK 392 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERd----qFdEAnnq 392 (416)
++..-+.+|..||..++.+...|..+=.+-+...|.-+..+-....|++ ||+-+.+|
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~q 89 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQ 89 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677788888888888888777778888887777777777774 44444444
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.74 E-value=1.6e+02 Score=25.28 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=17.4
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 348 IQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 348 I~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
+..|+.+.++++.|+..+.-.|.+++.++..++.|
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e 111 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555555555444
No 39
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=39.76 E-value=35 Score=33.27 Aligned_cols=56 Identities=9% Similarity=0.217 Sum_probs=45.5
Q ss_pred hhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHH-hhhcCcHH-HHHHHHHhHHHHHH
Q 014917 126 FRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFG-LCLAGGKE-VHSAVMSSIQDLAT 183 (416)
Q Consensus 126 FrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFg-lCL~GGke-vh~Ai~ssiqdLA~ 183 (416)
+..|+-+.+.+..|+.+ +-+|+..-+.+.+|+++ +|+..+.+ =|..+++++...+.
T Consensus 154 ~~~vl~~~~~i~~l~~~--L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 154 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp HHHHHTCSSHHHHHHHT--CCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH--hCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 56677778888877777 57888888899999998 99988644 49999999988765
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.71 E-value=2.3e+02 Score=30.07 Aligned_cols=90 Identities=10% Similarity=0.075 Sum_probs=62.6
Q ss_pred HhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhHHH
Q 014917 293 VKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQ-ELEKQKDELEIALKKVNTSLVT 371 (416)
Q Consensus 293 ~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~-~LekqkdeLEAeLkkVn~sL~a 371 (416)
..|+|||-.-+.+..+..+++.-+ .++-+.|.=|.+..++.. ....||+ +|+++...|+.++.-+=..|.+
T Consensus 64 krINELKnqLEdlsKnsKdseqy~----k~~~E~Lr~rq~q~~dNd----NtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 64 NRINKLKNSLFEYQKNNKDSHSLT----TNIMEILRGDFSSANNRD----NTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHH----HHHHHTTSSHHHHHHHHH----HHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchhHHHHH----HHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999876 455555555554444322 2566777 7888888888877666666666
Q ss_pred HHHHHHhhHHHHHhHHHHH
Q 014917 372 TRARLRNAKEEREQFDEAN 390 (416)
Q Consensus 372 A~aRl~~~rEERdqFdEAn 390 (416)
-+..|.+.+.+=.+.+-+-
T Consensus 136 LQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777776666655555443
No 41
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.52 E-value=34 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
|..|.++|..+.++|.++++...+.|+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667777777777777766666554
No 42
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.74 E-value=87 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 014917 344 LTVEIQELEKQKDELEIALKK 364 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkk 364 (416)
|-.+|..||.+..+|+++|..
T Consensus 27 le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 334555566666666665543
No 43
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=38.08 E-value=1.4e+02 Score=24.29 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHh-HHHHH-------HHHHHHHhhhhhhhhHHH
Q 014917 355 KDELEIALKKVNTSLVTTRARLRNAKEEREQ-FDEAN-------NKILVYFKSKMSCQDRLL 408 (416)
Q Consensus 355 kdeLEAeLkkVn~sL~aA~aRl~~~rEERdq-FdEAn-------nqIi~~Lk~K~s~~dr~~ 408 (416)
..+|+.+++.-..+|..|+-+|+.+.+.=++ =|+-| ...|.+|..|..++-|.+
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrql 68 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKREL 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999876642211 13444 346788888888877654
No 44
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.95 E-value=50 Score=28.46 Aligned_cols=83 Identities=11% Similarity=0.198 Sum_probs=48.6
Q ss_pred chhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHHhhhcCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHHH
Q 014917 125 NFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQ 204 (416)
Q Consensus 125 nFrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFglCL~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ 204 (416)
.|++.|.+ ..++|.||..++.++.+++.++--|..+|-==.+.+..++..+........=.|+--.+=|-+|..
T Consensus 39 ~f~~e~V~------~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 39 HFHHELVY------EAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp GGHHHHHH------HHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred cchHHHHH------HHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccCccchHHHHHHHHH
Confidence 78887776 456777898777777777777764444443222333333333333333333236666777778877
Q ss_pred hhhhccccC
Q 014917 205 GAIAGLKIN 213 (416)
Q Consensus 205 ~AIsGLK~n 213 (416)
.||..-=++
T Consensus 113 ~ai~~g~l~ 121 (152)
T 2ion_A 113 ECFQAGIIS 121 (152)
T ss_dssp HHHHTTCSC
T ss_pred HHHHCCCCC
Confidence 777654444
No 45
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=37.75 E-value=1.3e+02 Score=25.35 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHh-HHHHH-------HHHHHHHhhhhhhhhHHH
Q 014917 355 KDELEIALKKVNTSLVTTRARLRNAKEEREQ-FDEAN-------NKILVYFKSKMSCQDRLL 408 (416)
Q Consensus 355 kdeLEAeLkkVn~sL~aA~aRl~~~rEERdq-FdEAn-------nqIi~~Lk~K~s~~dr~~ 408 (416)
..+|+.+++....+|..|+-+|+.+.+.=++ =|+-| ...|.+|..|..++-|.+
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~l 68 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKREL 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999999999999999877642211 03333 456788999988887765
No 46
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=35.94 E-value=15 Score=36.58 Aligned_cols=55 Identities=20% Similarity=0.458 Sum_probs=36.5
Q ss_pred ecCCCCCCCCcchhhhhhhhhhhhhhhhHhhccCCC-hhHHHHHHHHHH---hhhcCcHHHHHHHHHh
Q 014917 114 VDPDSGGGEPMNFRDVFLFSQALEGITLSMILEAPD-EEEVSLLLEIFG---LCLAGGKEVHSAVMSS 177 (416)
Q Consensus 114 ~D~d~ggGePmnFrdVFL~SqALEgI~lSmileaP~-eeEvsLLlEiFg---lCL~GGkevh~Ai~ss 177 (416)
+|+-+. |+|+.++++||-.. ++-.-|. .+.+..|-++|- -+|.-|-++|..++..
T Consensus 349 V~~~Vn-gG~~~y~~~Fl~~~--------~~~~~p~~~~~v~~Lk~~~~~~~~~l~~~L~lh~~li~~ 407 (436)
T 2yin_A 349 VDPAVM-GGFAKYEKAFFTEE--------YVRDHPEDQDKLTHLKDLIAWQIPFLGAGIKIHEKRVSD 407 (436)
T ss_dssp HCCSSS-CCTHHHHHHHCSHH--------HHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred cccccc-ccHHHHHHHhcCch--------hhhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 788887 88999999999543 2334564 467888877765 2335555566555543
No 47
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.74 E-value=27 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHH
Q 014917 348 IQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 348 I~~LekqkdeLEAeLkkVn~sL~ 370 (416)
|..|+.+.+.||.+|..+...|.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888877766543
No 48
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.50 E-value=43 Score=26.26 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=18.5
Q ss_pred HHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHH
Q 014917 313 EKRILENRSQKEEALHFRLAKCNEVCQLEKDL 344 (416)
Q Consensus 313 EkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel 344 (416)
++|-.-||. -.-.||..|..-+..+|..|
T Consensus 10 ~kR~~qNR~---AQRafReRK~~~i~~LE~~v 38 (70)
T 1gd2_E 10 SKRKAQNRA---AQRAFRKRKEDHLKALETQV 38 (70)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455555542 33479999988777666543
No 49
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.14 E-value=29 Score=28.47 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
.|.++|+.|+.|+++|++++......|+
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667778888888888877777655443
No 50
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.02 E-value=1.5e+02 Score=25.62 Aligned_cols=54 Identities=28% Similarity=0.406 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhHHHHHh-HHHHH-------HHHHHHHhhhhhhhhHHH
Q 014917 355 KDELEIALKKVNTSLVTTRARLRNAKEEREQ-FDEAN-------NKILVYFKSKMSCQDRLL 408 (416)
Q Consensus 355 kdeLEAeLkkVn~sL~aA~aRl~~~rEERdq-FdEAn-------nqIi~~Lk~K~s~~dr~~ 408 (416)
..+|+.|+..-+.+|..|+-+|+.+.+.=++ =|+-| ...|..|..|..++-|.+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqL 85 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQL 85 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999877642211 03333 456788888888887765
No 51
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.30 E-value=69 Score=26.60 Aligned_cols=84 Identities=11% Similarity=0.194 Sum_probs=48.7
Q ss_pred chhhhhhhhhhhhhhhhHhhccCCChhHHHHHHHHHHhhhcCcHHHHHHHHHhHHHHHHhccccchhhccChHHHHHHHH
Q 014917 125 NFRDVFLFSQALEGITLSMILEAPDEEEVSLLLEIFGLCLAGGKEVHSAVMSSIQDLATVFSTYQDEVLVKREELLQYAQ 204 (416)
Q Consensus 125 nFrdVFL~SqALEgI~lSmileaP~eeEvsLLlEiFglCL~GGkevh~Ai~ssiqdLA~aFs~y~DEVlvkReELLq~aQ 204 (416)
.|++.|.+ ..++|.||..++.++.++..++--|..+|-==.+.+..+++.+........=.|+--.+-|-+|..
T Consensus 37 ~f~~e~V~------~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~ 110 (129)
T 2nsz_A 37 HFHHELVY------EAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 110 (129)
T ss_dssp GGHHHHHH------HHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred ccHHHHHH------HHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhcCccchHHHHHHHHH
Confidence 67777776 456677898877777777777764444443223333333333333333333236666777778877
Q ss_pred hhhhccccCC
Q 014917 205 GAIAGLKINA 214 (416)
Q Consensus 205 ~AIsGLK~nA 214 (416)
.||..-=++.
T Consensus 111 ~ai~~g~l~~ 120 (129)
T 2nsz_A 111 ECFQAGIISK 120 (129)
T ss_dssp HHHHTTCSCH
T ss_pred HHHHCCCCCH
Confidence 7776644443
No 52
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=32.92 E-value=27 Score=33.70 Aligned_cols=53 Identities=23% Similarity=0.511 Sum_probs=40.2
Q ss_pred eEEEecCCCCCCC--CcchhhhhhhhhhhhhhhhHhhc--------cCCChhHHHHHHHHHHhh
Q 014917 110 VVYFVDPDSGGGE--PMNFRDVFLFSQALEGITLSMIL--------EAPDEEEVSLLLEIFGLC 163 (416)
Q Consensus 110 ~vly~D~d~ggGe--PmnFrdVFL~SqALEgI~lSmil--------eaP~eeEvsLLlEiFglC 163 (416)
.-|.|-+|.|+|. |+-|-| ++.|++.+.|.|-=|. --|++|...||.|||-+-
T Consensus 179 ~ayiYQSDLG~Galp~lr~eD-Wmt~rg~~pIsLd~l~~lls~ef~~l~dd~q~~lia~il~i~ 241 (281)
T 3eir_A 179 TAYIIQSDLGGGALPAVRVED-WISRRGSDPVSLDELNQLLSKDFSKMPDDVQTRLLASILQID 241 (281)
T ss_dssp CBEEECCBCCSSSSCCBCHHH-HHHHHTTCCBCHHHHHHHTSGGGGGSCHHHHHHHHHHHHCTT
T ss_pred ceEEEecccCCCcCcceeHHH-HHhhcCCCcccHHHHHHHHHHHhhhCCHHHHHHHHHHHHhhc
Confidence 3488999999775 788877 6889999988775432 247778888888888653
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.52 E-value=68 Score=30.89 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=38.8
Q ss_pred hhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhh
Q 014917 309 TSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNA 379 (416)
Q Consensus 309 tskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~ 379 (416)
.+.+++-..+.|.|---+ .| -|-.+-.-|-.+.+.-+|+..|||+|.++.|.+|..++|.++..
T Consensus 406 ~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATA--NH-----TVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhc--ch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554332 11 12233333444555556888999999999999988888776543
No 54
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=32.31 E-value=2.8e+02 Score=26.31 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=32.1
Q ss_pred HHHHHHHHH------HhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHH
Q 014917 344 LTVEIQELE------KQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 344 l~~EI~~Le------kqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqI 393 (416)
|..+|..|+ ++...||.||-........|.|.|.|.+ |..|-||-+--
T Consensus 116 l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k--R~~lKEa~~~~ 169 (234)
T 3plt_A 116 ITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNIT--REKLKAAYSYM 169 (234)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhH--HHHHHHHHHHH
Confidence 455555555 3456788888887777788888888876 45566665433
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.30 E-value=95 Score=24.52 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
..+|..|+++.+.++.++++....|.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544444444443
No 56
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.16 E-value=1.3e+02 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHH
Q 014917 346 VEIQELEKQKDELEIALKKVNTSLVT 371 (416)
Q Consensus 346 ~EI~~LekqkdeLEAeLkkVn~sL~a 371 (416)
-|+..|+.+.+.||++++.++..|+.
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999875
No 57
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=31.79 E-value=83 Score=23.25 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHHHHhh
Q 014917 347 EIQELEKQKDELEIALKKVNT 367 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~ 367 (416)
-++.|||..|.||++|..-.-
T Consensus 13 sV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 356899999999998865433
No 58
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.64 E-value=1.5e+02 Score=24.41 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=33.3
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 324 EEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 324 EeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
--|.+-|..|-.+...+|.+ ...|..+++.|..|+..+...+.+-..++
T Consensus 37 gyAq~CR~Kr~~q~~~LE~e----~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 37 GYAQSCRYKRVQQKHHLENE----KTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999998887755 44556666666666666665555544443
No 59
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=31.63 E-value=1.6e+02 Score=21.94 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=21.6
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 014917 323 KEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIAL 362 (416)
Q Consensus 323 KEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeL 362 (416)
++-|..-|-.|-..+..+|.++ ..|+++..+|..++
T Consensus 11 R~AA~rcR~rKk~~~~~Le~~v----~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 11 KMAAAKCRNRRRELTDTLQAET----DQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4678888888877776665443 34444444444444
No 60
>4gyt_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, predicted legionella effector; 2.05A {Legionella pneumophila subsp}
Probab=31.10 E-value=1.2e+02 Score=26.68 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=78.2
Q ss_pred hhhhhhHhhccCCChhHHHHHHHHHHhhhcCcH----------HHHHHHHHhHHHHHHhcccc--chhh-ccChHH-HHH
Q 014917 136 LEGITLSMILEAPDEEEVSLLLEIFGLCLAGGK----------EVHSAVMSSIQDLATVFSTY--QDEV-LVKREE-LLQ 201 (416)
Q Consensus 136 LEgI~lSmileaP~eeEvsLLlEiFglCL~GGk----------evh~Ai~ssiqdLA~aFs~y--~DEV-lvkReE-LLq 201 (416)
|-|+..+|+--+-....-..|..+|+. .|.. ++++.+...+.|---.|..+ .|+. +.-|-+ |-+
T Consensus 33 lHG~L~Gll~gg~~~~~~~wl~~l~~~--~~~~~~~~~~~~l~~l~~~~~~~L~d~~~~f~plLP~dd~~l~eR~~aL~~ 110 (194)
T 4gyt_A 33 LHGIMCGYLCAGADSQGEAYIRALLNN--KKDEQSRNALLSMFSVFSISQQQMNNFDFEFEMLLPDDDESLVTRAQAFSE 110 (194)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTTT--CCSHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhc--CCccccHHHHHHHHHHHHHHHHHHhcCCcccccCCCCcccchHHHHHHHHH
Confidence 678888886544344555666666663 1221 22233333333333344443 2333 445544 567
Q ss_pred HHHhhhhccccCC-cchh-chHHHHHHHhhhhhcCCCCCCCcccccccccchhhccHHHHHHHHHHHHHhhhh--hhhhh
Q 014917 202 YAQGAIAGLKINA-DLPR-IDAEARGLIGKLDKIKPVQWPSDEVVDKLSEETTTVSTEALKETLEQIQLCSKL--EDLFL 277 (416)
Q Consensus 202 ~aQ~AIsGLK~nA-di~R-iD~Ea~~L~~kl~~~~~~~~~~~~~~~k~~~~~~~~~~ea~kealaqirlCS~l--E~llL 277 (416)
.+|+=+.|+-..- +... ++.|..++-+-|..+.........+. ...-.+|.|.+.-||+|--+ +++..
T Consensus 111 Wc~GFL~G~gl~~~~~~~~~~~e~~E~l~dl~~Ia~l~~d~~dd~--------ee~E~~~~El~EyvR~aal~~~~e~~~ 182 (194)
T 4gyt_A 111 WCEGFTQGLTIAGVGMEQFYEEESQDALQHLMEFAELDCESLEVG--------EEDERALMEVSEYTRMAVLRLHSDLVL 182 (194)
T ss_dssp HHHHHHHHHHHTTCCGGGCSCHHHHHHHHHHHHHTTCCTTTCCSS--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHhccCcccCcC--------cccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7999999997653 3333 68888888888888865442111111 12456888888889999887 77765
Q ss_pred hhhcccCCCCcchh
Q 014917 278 KKKSLRNGDSPEQH 291 (416)
Q Consensus 278 kkksl~~GdSpe~h 291 (416)
++.. .+++|-+|
T Consensus 183 ~~~~--~~~~~tlH 194 (194)
T 4gyt_A 183 HERE--LGDSGTTH 194 (194)
T ss_dssp CC------------
T ss_pred CccC--CCCCCCCC
Confidence 5433 35677776
No 61
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.96 E-value=2e+02 Score=22.84 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
..=++.+|.+-.+||.++.- ...+|...+.+|+++...-.+++.-|-.|.-++
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~-------le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL 58 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSE-------MEQRLEKSQSEQDAFRSNLKTLLEILDGKIFEL 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33445555555555554444 444555677888888777778888887776553
No 62
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.56 E-value=89 Score=24.36 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=13.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 345 TVEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 345 ~~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
..+|..|+++.+.++.++++....|
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555554444
No 63
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.35 E-value=1.5e+02 Score=23.35 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
.+..+...|...+..+++..+.|+.+++.+...++.....|.
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666666555554443
No 64
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.27 E-value=1.2e+02 Score=24.40 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=24.1
Q ss_pred HHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 369 LVTTRARLRNAKEEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 369 L~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
+.....+|..++.+|+++...-.+++.-|-.|.-++
T Consensus 29 v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 29 LRAMERSLEEARAERERARAEVGRAAQLLDVSLFEL 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444555677778888777777777777776543
No 65
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.94 E-value=2.7e+02 Score=23.70 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=59.1
Q ss_pred HHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH---h
Q 014917 302 SESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR---N 378 (416)
Q Consensus 302 sESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~---~ 378 (416)
.+-..+|..+++..+....+-..++-.. ...|...+=+||...|..++.+.++|+.-..-|..- -.|.. .
T Consensus 33 k~EVq~sl~~l~~l~~~w~~l~~~~~~~---s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n----p~kF~l~~~ 105 (130)
T 4dnd_A 33 RGEVQKAVNTARGLYQRWCELLQESAAV---GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN----PGKFKLPAG 105 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----HHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----HHhcCCCHH
Confidence 3344555666666555443322222211 135788888999999999999999999887766532 22322 2
Q ss_pred hHHHHHhHHHHHHHHHHHHhhhhh
Q 014917 379 AKEEREQFDEANNKILVYFKSKMS 402 (416)
Q Consensus 379 ~rEERdqFdEAnnqIi~~Lk~K~s 402 (416)
.-..|.+|-.+..+-|..+|..++
T Consensus 106 Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 106 DLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 246789999999888888887654
No 66
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.88 E-value=4.9e+02 Score=26.71 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHhhhhhHHHHHH
Q 014917 294 KVHKLKIFSESLVNSTSKAEKRI 316 (416)
Q Consensus 294 kVdKLKvlsESLanStskAEkRI 316 (416)
.++-|+-.-++|+|+|+.+...|
T Consensus 101 ~LqeLe~~l~~lsn~Ts~~~~~i 123 (464)
T 1m1j_B 101 VLRDLKDRVAKFSDTSTTMYQYV 123 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 36667777788888888766654
No 67
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.74 E-value=1.6e+02 Score=24.44 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
-.|..||+.|..++..||+.|..+.....
T Consensus 46 q~L~~el~~l~~~~~~LE~~l~e~e~~~~ 74 (129)
T 3tnu_B 46 QRLRAEIDNVKKQCANLQNAIADAEQRGE 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888776655443
No 68
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.54 E-value=1.9e+02 Score=29.72 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRAR 375 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aR 375 (416)
++.+|...|..+..+||++++.+...+...-.+
T Consensus 75 ~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 75 DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667777777777777777776666654433
No 69
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=28.37 E-value=1.2e+02 Score=22.87 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=30.1
Q ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 014917 322 QKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTS 368 (416)
Q Consensus 322 QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~s 368 (416)
-.+-|-.+|-.|-..+..+|. ++..|+.+..+|++++..+...
T Consensus 17 NreAArrsR~RK~~~~~~Le~----~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 17 NTEAARRSRARKLQRMKQLED----KVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999888776664 4455677777777766655443
No 70
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=27.92 E-value=2.8e+02 Score=24.06 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTT 372 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA 372 (416)
-+...-..|...+..|++++..|+.+-|++...+..|
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka 47 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDA 47 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566777777788888888888877776666444
No 71
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.76 E-value=2.7e+02 Score=23.30 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=29.3
Q ss_pred HHhHHHHHHHHHHHhhhH-HHHHHHHHhhHHHHHhHHHHHHHHHHHHhhh
Q 014917 352 EKQKDELEIALKKVNTSL-VTTRARLRNAKEEREQFDEANNKILVYFKSK 400 (416)
Q Consensus 352 ekqkdeLEAeLkkVn~sL-~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K 400 (416)
|+++..++.||-.+.++| ..|+--...+|-+|..++.=|.+...-|+-|
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555554 3455556666777777777777766666554
No 72
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.61 E-value=4e+02 Score=27.34 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=26.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHH
Q 014917 334 CNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLR 377 (416)
Q Consensus 334 ~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~ 377 (416)
+++.-+..+.|...+...|+|+-+++..+++.+..|..-.+.++
T Consensus 116 Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 116 STTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666666666655555444
No 73
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=26.79 E-value=3.4e+02 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH----HHhHHHHHHHHH
Q 014917 347 EIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE----REQFDEANNKIL 394 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE----RdqFdEAnnqIi 394 (416)
.+..||+..|.||.+|..-.........-|.+|--+ -..|++-||.|-
T Consensus 99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 355788888888887776555555555555544433 356777777653
No 74
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.22 E-value=29 Score=34.19 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=45.4
Q ss_pred CCCcchhhhhhhhhhhHHhhhchhhhhhhhhhhccccccccccHHHHHHHHHHhh
Q 014917 6 GGRNNLTRTVRSYADTVVQTAGNAVTEGAKIITDRIGARNFNNFRQTAKRLEEVS 60 (416)
Q Consensus 6 gg~~~ltRtV~~yadsVv~hAGqAva~GAkii~drig~rn~kS~k~T~kRLEeaA 60 (416)
||-+-...-++|+.-++.|-|.++.-...++|++.||.-|+.-+|.-...+=.++
T Consensus 20 ~~~~~~~~W~~nS~laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s 74 (325)
T 3mv2_A 20 GPHMETAIWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGC 74 (325)
T ss_dssp -CCHHHHHHHHHCCSHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHT
T ss_pred CCCcHHHHHHHcCCcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHH
Confidence 5666677889999999999999999999999999999999998887655444333
No 75
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=25.86 E-value=3.4e+02 Score=23.90 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhh------HHHHHHHHHh------hHHHHHhHHHHHHHHHHHHhhhhhhhhH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTS------LVTTRARLRN------AKEEREQFDEANNKILVYFKSKMSCQDR 406 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~s------L~aA~aRl~~------~rEERdqFdEAnnqIi~~Lk~K~s~~dr 406 (416)
|+|-+||...-++-.+|+++|..+-.- +..-=.|++. -+|++..|+--.|. +.|+|..++.-|.
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~K-LsHIK~lI~~YD~ 137 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSK-LSHIKKMVGDYDR 137 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhhc
Confidence 678899999999999999998874210 1111223332 36677777654443 4667766666554
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.16 E-value=2.3e+02 Score=24.76 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEE 382 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEE 382 (416)
|..|-+.-+++..+|+.|++.+|-.|-.|.+.+...|-+
T Consensus 62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444446778888888888888888887766655443
No 77
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.77 E-value=2e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
.+..+...|...+..+++..+.|+.+++.+...++.....|
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666555544
No 78
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=24.58 E-value=3.8e+02 Score=27.89 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=10.9
Q ss_pred hHHHHHhHHHHHHHHHHH
Q 014917 379 AKEEREQFDEANNKILVY 396 (416)
Q Consensus 379 ~rEERdqFdEAnnqIi~~ 396 (416)
..+||.++-+=.+.++.|
T Consensus 535 me~~~~~~~~e~~~~~~~ 552 (592)
T 1f5n_A 535 MENDRVQLLKEQERTLAL 552 (592)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566777766555555543
No 79
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=24.23 E-value=1.5e+02 Score=24.12 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 014917 335 NEVCQLEKDLTVEIQELEKQKDELEIALKKVNTS 368 (416)
Q Consensus 335 ~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~s 368 (416)
+.+..+|.....+++.++.....||++|.++...
T Consensus 26 ~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 26 ERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666654443
No 80
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.16 E-value=2.8e+02 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Q 014917 342 KDLTVEIQELEKQKDELEIALKKVNTSLV 370 (416)
Q Consensus 342 Kel~~EI~~LekqkdeLEAeLkkVn~sL~ 370 (416)
-.|..||+.|..++..||+.|..+.....
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGRYC 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35666777788888888777766655443
No 81
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.00 E-value=1.8e+02 Score=28.99 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHh
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQ 385 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdq 385 (416)
+|..|+.+|.+++.+|+.+.++....+......|....-+|.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~ 49 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 49 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666555445443
No 82
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.86 E-value=1.3e+02 Score=27.42 Aligned_cols=7 Identities=43% Similarity=0.510 Sum_probs=3.0
Q ss_pred hhhhHHH
Q 014917 294 KVHKLKI 300 (416)
Q Consensus 294 kVdKLKv 300 (416)
.|.|..+
T Consensus 52 ~V~kG~~ 58 (341)
T 3fpp_A 52 KVKKDQL 58 (341)
T ss_dssp EECTTCE
T ss_pred EECCCCE
Confidence 3444444
No 83
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=23.60 E-value=1.2e+02 Score=32.95 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhHHHH----HHHHHhhHHHHHhHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKVNTSLVTT----RARLRNAKEEREQFDEANNK 392 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkVn~sL~aA----~aRl~~~rEERdqFdEAnnq 392 (416)
++.+|+..|+|+...++.++++++.+|+.. .|--....+||+...++..+
T Consensus 797 d~~~~~~rl~k~~~~~~~~~~~~~~~l~~~~f~~~ap~~~~~~~~~~~~~~~~~ 850 (862)
T 1gax_A 797 DVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQ 850 (862)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSSSCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998888762 22222344455555554444
No 84
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.37 E-value=3.4e+02 Score=22.68 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQF 386 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqF 386 (416)
+...+..|+.+..+|+..++.++..++.-...+....++.-+|
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555555555555555555555555444444444444444
No 85
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=22.16 E-value=1.9e+02 Score=24.54 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=6.3
Q ss_pred HHHHHhhHHHHHh
Q 014917 373 RARLRNAKEEREQ 385 (416)
Q Consensus 373 ~aRl~~~rEERdq 385 (416)
...+..+..|||.
T Consensus 31 k~~ve~lEkERDF 43 (106)
T 4e61_A 31 KGTVSTLEIEREF 43 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333445566663
No 86
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.03 E-value=1e+02 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014917 336 EVCQLEKDLTVEIQELEKQKDELEIALKK 364 (416)
Q Consensus 336 Ev~~~EKel~~EI~~LekqkdeLEAeLkk 364 (416)
.+...+..+..|+..|..+..+|.++|.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 51 KLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556677888888888888888888764
No 87
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=21.88 E-value=48 Score=30.67 Aligned_cols=38 Identities=26% Similarity=0.540 Sum_probs=28.0
Q ss_pred CCCCCCceEEEecCCCCCCC--CcchhhhhhhhhhhhhhhhHh
Q 014917 103 DSPKKPTVVYFVDPDSGGGE--PMNFRDVFLFSQALEGITLSM 143 (416)
Q Consensus 103 ~sp~~~~~vly~D~d~ggGe--PmnFrdVFL~SqALEgI~lSm 143 (416)
|+|.++. |.|-+|.|+|. |+-|-| ++.|++.+.|.|-=
T Consensus 76 ~n~~r~a--yiyQSDLG~galp~lr~eD-Wm~~rg~~pisld~ 115 (195)
T 3efy_A 76 ENSCRPA--FLYQSDLGEGVTRKLRFED-WMTHKALTPILLDD 115 (195)
T ss_dssp CSTTCEE--EEECCBCSSSSSCCBCHHH-HHTTGGGSCEEHHH
T ss_pred CCCCcce--EEEecccCCccccceeHHH-HHhhcCCCCccHHH
Confidence 3444444 88999999665 778877 67899988887643
No 88
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.59 E-value=3.6e+02 Score=22.59 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=43.7
Q ss_pred HHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014917 314 KRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRN 378 (416)
Q Consensus 314 kRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~ 378 (416)
++|+.-|.. .|+.=---.+++.+.=+||-.=|..||..|.+||..+++-.--++.-+.|...
T Consensus 27 kkiLaER~k---pL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (106)
T 1j1d_B 27 KKILAERRK---VLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIND 88 (106)
T ss_dssp HHHHHHHHH---HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 455555552 34333333466777778888889999999999999998887777766666543
No 89
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.56 E-value=93 Score=29.85 Aligned_cols=36 Identities=28% Similarity=0.356 Sum_probs=17.4
Q ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHh
Q 014917 350 ELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQ 385 (416)
Q Consensus 350 ~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdq 385 (416)
+|++|.+.|.++..++-..|+.++..+...++|=++
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555555555555444
No 90
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.50 E-value=4e+02 Score=27.14 Aligned_cols=100 Identities=14% Similarity=0.032 Sum_probs=54.2
Q ss_pred HHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhH
Q 014917 301 FSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAK 380 (416)
Q Consensus 301 lsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~r 380 (416)
|-..|....-+...||-+-+....+ =-....++...=+.+..-+.+-.+|..+.+.-..+|+..|..=..-|+.+=
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~----~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V 129 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFN----YQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKV 129 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666655544332 223445566666677777777777777777777777777766555555433
Q ss_pred HHHHhHHHHHHHHHHHHhhhhhhh
Q 014917 381 EEREQFDEANNKILVYFKSKMSCQ 404 (416)
Q Consensus 381 EERdqFdEAnnqIi~~Lk~K~s~~ 404 (416)
.+--+=-..-..+|.++..|+.-+
T Consensus 130 ~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 130 IEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 222221112223444455554443
No 91
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=21.15 E-value=96 Score=29.83 Aligned_cols=54 Identities=28% Similarity=0.526 Sum_probs=39.6
Q ss_pred CceEEEecCCCCCCC--CcchhhhhhhhhhhhhhhhHhhcc--------CCChhHHHHHHHHHHh
Q 014917 108 PTVVYFVDPDSGGGE--PMNFRDVFLFSQALEGITLSMILE--------APDEEEVSLLLEIFGL 162 (416)
Q Consensus 108 ~~~vly~D~d~ggGe--PmnFrdVFL~SqALEgI~lSmile--------aP~eeEvsLLlEiFgl 162 (416)
+..-|.|-+|.|||. |+-|-| ++.|+|.+.|.|-=|.. -|+++...++-++|-+
T Consensus 146 ~r~ayiyQSDLG~Galp~lr~eD-Wm~~rg~~pIsLd~l~~~ls~~F~~ms~d~~~~lIA~ifdI 209 (261)
T 4fbj_A 146 ETVGYIYQSDLGQGALPPLKIAD-WLNSRGKDAVSLNKLKKLLSREFNLLSDDEKRALISETLDI 209 (261)
T ss_dssp CCEEEEECCBCSCSSSCCBCHHH-HHHHGGGSEEEHHHHHHHHSGGGGGSCHHHHHHHHHHHHCT
T ss_pred CcceEEEecccCCCCCcceeHHH-HHhhcCCCCccHHHHHHHHHHhhccCCchHHHHHHHHHHcc
Confidence 445688999999776 788877 68899999887754332 4666677777777754
No 92
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ...
Probab=20.98 E-value=42 Score=30.51 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=54.6
Q ss_pred hhccchhHHHHHHHHHHH----HHhhhhccCCC-CCCC----CCccccCCCCCCCCCceEEEecCCCCCCCCcchhhhhh
Q 014917 61 VSCRGIERVQLLRRWLVA----LKEVERCSTSP-DNNY----LELDDQLNSDSPKKPTVVYFVDPDSGGGEPMNFRDVFL 131 (416)
Q Consensus 61 vs~rG~ERvqlLRRWL~a----Lkeier~s~~~-~~~~----~~~~q~~~~~sp~~~~~vly~D~d~ggGePmnFrdVFL 131 (416)
|..||+.=...|-|++.+ +++.+-++..+ ++.. +-.++.. -| -. -||+-.+
T Consensus 92 VTLRg~~my~FL~rll~v~lPrirdf~Gl~~~sfd~~GN~sfGi~e~~~---FP---Ei--~yD~~~~------------ 151 (182)
T 1mji_A 92 VTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLI---FP---EI--TYDMVDA------------ 151 (182)
T ss_dssp EEECHHHHHHHHHHHHHTTTTTCSSCCCBCTTCBCSSSEEEEEECSCEE---CS---SC--EECCTTT------------
T ss_pred EEEccHHHHHHHHHHHHHhccccccccccCccccCCCceEEEecchhhc---CC---cc--cccccCC------------
Confidence 778999889999999987 48887777666 3221 1111111 11 21 2888664
Q ss_pred hhhhhhhhhhHhhccCCChhHHHHHHHHHHhh
Q 014917 132 FSQALEGITLSMILEAPDEEEVSLLLEIFGLC 163 (416)
Q Consensus 132 ~SqALEgI~lSmileaP~eeEvsLLlEiFglC 163 (416)
+-|+-......|.+++|..+|+.-||+=
T Consensus 152 ----i~GmdItivtta~td~ea~~LL~~~g~P 179 (182)
T 1mji_A 152 ----LRGMDIAVVTTAETDEEARALLELLGFP 179 (182)
T ss_dssp ----SCCEEEEEEESCSSHHHHHHHHHHHTCC
T ss_pred ----ccCceEEEEeccCCHHHHHHHHHHcCCc
Confidence 4566666788999999999999999963
No 93
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.23 E-value=2.5e+02 Score=22.99 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=28.7
Q ss_pred hhhhhhh-hhhhHHHHHHHH---HHHHHHHHhHHHHHHHHHHHhhhH
Q 014917 327 LHFRLAK-CNEVCQLEKDLT---VEIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 327 l~fRv~K-~~Ev~~~EKel~---~EI~~LekqkdeLEAeLkkVn~sL 369 (416)
|.|||+- .||-.+-||.|. +||+.|+.|...=+++++.+...|
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555543 455556666554 688888888888888887776655
No 94
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.10 E-value=1.3e+02 Score=23.10 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 014917 343 DLTVEIQELEKQKDELEIALKKV 365 (416)
Q Consensus 343 el~~EI~~LekqkdeLEAeLkkV 365 (416)
++..|+..|..+..+|+++|...
T Consensus 58 ~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 58 THQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666777777777666543
Done!