Query 014917
Match_columns 416
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 03:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014917.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014917hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ivsa1 a.2.7.3 (A:797-862) Va 62.9 6.5 0.00047 27.8 5.3 50 344-393 2-55 (66)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 30.4 39 0.0028 25.7 5.4 20 215-234 2-21 (133)
3 d1qvra2 c.37.1.20 (A:149-535) 30.2 1.8E+02 0.013 26.1 10.9 121 260-389 210-332 (387)
4 d2oeza1 e.68.1.1 (A:1-245) Unc 29.3 1.5E+02 0.011 25.5 9.7 49 265-313 13-61 (245)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 26.0 98 0.0071 22.9 6.9 66 311-376 33-102 (107)
6 d2ap3a1 a.24.27.1 (A:12-196) H 25.5 1E+02 0.0076 21.6 8.0 7 348-354 132-138 (185)
7 d1seta1 a.2.7.1 (A:1-110) Sery 24.0 1.2E+02 0.0089 22.3 7.2 53 317-371 44-96 (110)
8 d1lrza1 a.2.7.4 (A:245-309) Me 22.5 37 0.0027 24.5 3.6 24 348-371 5-28 (65)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 21.1 67 0.0049 23.9 5.1 23 347-369 80-102 (107)
10 d1lvfa_ a.47.2.1 (A:) Syntaxin 18.5 1.8E+02 0.013 21.6 8.6 61 334-403 37-105 (106)
No 1
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=62.90 E-value=6.5 Score=27.76 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHH----HHHHHhhHHHHHhHHHHHHHH
Q 014917 344 LTVEIQELEKQKDELEIALKKVNTSLVTT----RARLRNAKEEREQFDEANNKI 393 (416)
Q Consensus 344 l~~EI~~LekqkdeLEAeLkkVn~sL~aA----~aRl~~~rEERdqFdEAnnqI 393 (416)
+.+|+..|+|+.+.++.++.+++..|+.- .|=-....++|++..+...+|
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~ 55 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQA 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999998888743 122223344555555444443
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=30.40 E-value=39 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=10.0
Q ss_pred cchhchHHHHHHHhhhhhcC
Q 014917 215 DLPRIDAEARGLIGKLDKIK 234 (416)
Q Consensus 215 di~RiD~Ea~~L~~kl~~~~ 234 (416)
++..|-.....|++.|+...
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~ 21 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQ 21 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444
No 3
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=30.20 E-value=1.8e+02 Score=26.12 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHH-HHHhhhh-hhhhhhhhcccCCCCcchhhHhhhhHHHHHHHHhhhhhHHHHHHhhhHhhhHHHhhhhhhhhhhh
Q 014917 260 KETLEQ-IQLCSKL-EDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAEKRILENRSQKEEALHFRLAKCNEV 337 (416)
Q Consensus 260 kealaq-irlCS~l-E~llLkkksl~~GdSpe~ha~kVdKLKvlsESLanStskAEkRI~d~R~QKEeAl~fRv~K~~Ev 337 (416)
.+|+.. ++||+|. -...++-|.+.- --+..-+.|.-..|-=......+++|.....+++-..+ .+..+.
T Consensus 210 ~~ai~~~v~ls~ryi~~r~~PdKAidl------ld~a~a~~~i~~~s~P~el~~ler~I~qLe~E~~aL~k---e~d~~s 280 (387)
T d1qvra2 210 DSAIIAAATLSHRYITERRLPDKAIDL------IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKK---EKDPDS 280 (387)
T ss_dssp HHHHHHHHHHHHHHCCSSCTHHHHHHH------HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSS---CSSHHH
T ss_pred HHHHHHHHHhcccccccccChhhHHHH------HHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHh---ccchHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHhHHHH
Q 014917 338 CQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARLRNAKEEREQFDEA 389 (416)
Q Consensus 338 ~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEA 389 (416)
..--+++..||..|+.+.+.|+++.+.....+..-+.--.....-|.+.+.|
T Consensus 281 ~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 281 QERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 4
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=29.29 E-value=1.5e+02 Score=25.55 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=39.2
Q ss_pred HHHHhhhhhhhhhhhhcccCCCCcchhhHhhhhHHHHHHHHhhhhhHHH
Q 014917 265 QIQLCSKLEDLFLKKKSLRNGDSPEQHGVKVHKLKIFSESLVNSTSKAE 313 (416)
Q Consensus 265 qirlCS~lE~llLkkksl~~GdSpe~ha~kVdKLKvlsESLanStskAE 313 (416)
.||.|=|+|.|+-+=....+++++-.|......|=.+-|-+.-+=-|.|
T Consensus 13 riR~~LRLE~Lf~~~~~~~~~~~~~~~~~al~~Lfei~e~~~R~DlK~e 61 (245)
T d2oeza1 13 KTRIYLRVESLLRQAHLASGFADNHQYQLFFRALFDMVEIFEQIQLKSE 61 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3999999999999988888999999998888777776666655555544
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.96 E-value=98 Score=22.91 Aligned_cols=66 Identities=14% Similarity=0.213 Sum_probs=33.3
Q ss_pred HHHHHHhhhHhhhHHHhhhhhhh----hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Q 014917 311 KAEKRILENRSQKEEALHFRLAK----CNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVTTRARL 376 (416)
Q Consensus 311 kAEkRI~d~R~QKEeAl~fRv~K----~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~aA~aRl 376 (416)
.++..+-+-....+++-.||..= ...+..+-.+|...+..|+.+.+.|+.+++.++..++.....+
T Consensus 33 E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 33 ETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444555321 1245666666666666666666556555555555555544443
No 6
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=25.51 E-value=1e+02 Score=21.58 Aligned_cols=7 Identities=29% Similarity=0.017 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 014917 348 IQELEKQ 354 (416)
Q Consensus 348 I~~Lekq 354 (416)
+..+...
T Consensus 132 ~~~~~~~ 138 (185)
T d2ap3a1 132 EKTLFKY 138 (185)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.00 E-value=1.2e+02 Score=22.27 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhHhhhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH
Q 014917 317 LENRSQKEEALHFRLAKCNEVCQLEKDLTVEIQELEKQKDELEIALKKVNTSLVT 371 (416)
Q Consensus 317 ~d~R~QKEeAl~fRv~K~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn~sL~a 371 (416)
++.-+.+.-.++-.+.|.. .+--.++.+|+..|-.+..+||++++.+...+..
T Consensus 44 ~e~l~~~rN~~sk~i~k~~--~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 44 LQEVQTERNQVAKRVPKAP--PEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHGGGCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 8
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=22.55 E-value=37 Score=24.52 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=17.3
Q ss_pred HHHHHHhHHHHHHHHHHHhhhHHH
Q 014917 348 IQELEKQKDELEIALKKVNTSLVT 371 (416)
Q Consensus 348 I~~LekqkdeLEAeLkkVn~sL~a 371 (416)
|..|+...+.|+++|.+++..|..
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~lek 28 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEK 28 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777776653
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.07 E-value=67 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhH
Q 014917 347 EIQELEKQKDELEIALKKVNTSL 369 (416)
Q Consensus 347 EI~~LekqkdeLEAeLkkVn~sL 369 (416)
+|..|++|...|+.++..+..++
T Consensus 80 ~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 80 REKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 10
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.48 E-value=1.8e+02 Score=21.65 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--------hhHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhhhhh
Q 014917 334 CNEVCQLEKDLTVEIQELEKQKDELEIALKKVN--------TSLVTTRARLRNAKEEREQFDEANNKILVYFKSKMSC 403 (416)
Q Consensus 334 ~~Ev~~~EKel~~EI~~LekqkdeLEAeLkkVn--------~sL~aA~aRl~~~rEERdqFdEAnnqIi~~Lk~K~s~ 403 (416)
..|+..+-+||...+..++.|.++|+.-..-|. .. ..-..|.+|-.+..+-|.+.|.+++.
T Consensus 37 ~~e~~~~~~eL~~~l~siewdL~dLe~av~~ve~np~kf~l~~---------~ei~~Rr~fi~~~~~~I~~~~~~l~~ 105 (106)
T d1lvfa_ 37 REEIDWTTNELRNNLRSIEWDLEDLDETISIVEANPRKFNLDA---------TELSIRKAFITSTRQIVRDMKDQMSA 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGGTCCH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCHHhcCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHhc
Done!